Psyllid ID: psy4398
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 306 | 2.2.26 [Sep-21-2011] | |||||||
| Q9NX74 | 493 | tRNA-dihydrouridine(20) s | yes | N/A | 0.705 | 0.438 | 0.576 | 4e-69 | |
| Q9D7B1 | 493 | tRNA-dihydrouridine(20) s | yes | N/A | 0.705 | 0.438 | 0.571 | 1e-67 | |
| O74731 | 479 | tRNA-dihydrouridine(20) s | yes | N/A | 0.683 | 0.436 | 0.461 | 2e-46 | |
| P53720 | 384 | tRNA-dihydrouridine(20) s | yes | N/A | 0.696 | 0.554 | 0.451 | 2e-44 | |
| O95620 | 317 | tRNA-dihydrouridine(20a/2 | no | N/A | 0.647 | 0.624 | 0.324 | 3e-22 | |
| P44965 | 330 | tRNA-dihydrouridine synth | yes | N/A | 0.647 | 0.6 | 0.337 | 6e-22 | |
| Q87KU1 | 322 | tRNA-dihydrouridine synth | yes | N/A | 0.679 | 0.645 | 0.314 | 8e-22 | |
| Q32M08 | 324 | tRNA-dihydrouridine(20a/2 | no | N/A | 0.647 | 0.611 | 0.319 | 1e-21 | |
| P0ABT5 | 321 | tRNA-dihydrouridine synth | N/A | N/A | 0.656 | 0.626 | 0.330 | 1e-21 | |
| P0ABT6 | 321 | tRNA-dihydrouridine synth | yes | N/A | 0.656 | 0.626 | 0.330 | 1e-21 |
| >sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS2L PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 261 bits (667), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPKQ+S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+I+ + L IPVIANGGS +
Sbjct: 183 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHD 219
|
Dihydrouridine synthase. Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: - |
| >sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus2l PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+++++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT+ L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+IR + + L IPVIANGGS +
Sbjct: 183 HGRNRDERPQHPVSCEVIRAIAETLSIPVIANGGSHD 219
|
Dihydrouridine synthase. Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|O74731|DUS2_SCHPO tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 137/219 (62%), Gaps = 10/219 (4%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK---TERKVNDLLNTID 83
+NYSNK+ LAPMVR+ LP RLLAL YGA+LV+ E+VD L+ ER VND +N ID
Sbjct: 4 LNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCID 63
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT 143
FV P V+FR P E N++I Q+G+A PE A+EAAK V +DVA ID+N GCPK FS+
Sbjct: 64 FVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVH 123
Query: 144 GGMGAALLSTPDIACNILTTLISNLSIP----VSCKIRVFHNEADTIALCKRLEACGIIA 199
GMGA LL D +IL L++ + P +SCKIR+ + DT+ L +R+ G+ A
Sbjct: 124 AGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRA 183
Query: 200 IGVHGRTKAER---PRHRNRIEMIRTLTQHLKIPVIANG 235
I VH RT R P R+ + I + ++ + ++ NG
Sbjct: 184 ITVHCRTTPMRNTEPADRSYLSEIVGVCRNKDVSILVNG 222
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 9 EC: 1 |
| >sp|P53720|DUS2_YEAST tRNA-dihydrouridine(20) synthase [NAD(P)+] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 140/226 (61%), Gaps = 13/226 (5%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y+ K++LAPMVR LP RL+AL +GADLV+S E++D KL++ RK N L T+D+V
Sbjct: 2 VTYAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVV 61
Query: 87 PLD-----GSVVFRTCPR-EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQF 140
P ++VFRT P+ E +K+I QIG+A P A +AA KV +DV+ IDIN GCPK F
Sbjct: 62 PSKVQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHF 121
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRVFHNEADTIALCKRLEACG 196
S+ GMG+ALL TPD C IL L+ N+ S P+S KIR+ + DT+ L KRL A G
Sbjct: 122 SIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATG 181
Query: 197 IIAIGVHGRTKAERPRHR---NRIEMIRTLTQHLKIPVIANGGSKE 239
I + VH R R R + + I I + Q + +I NG ++
Sbjct: 182 ITNLTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGAIRD 227
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U20 in cytoplasmic tRNAs. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 9 EC: 1 |
| >sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ +V VK+ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA+ V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + T+ LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I++I+ +++ IPVIANG + + + V+ +
Sbjct: 194 HQPVHYDSIKIIK---ENMSIPVIANGDIRSLKEAENVWRIT 232
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|P44965|DUSB_HAEIN tRNA-dihydrouridine synthase B OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTIDFVDPLD 89
N+++LAPM + PFR L YGA L +SE + + ++ TE+ L ++ D L+
Sbjct: 10 NRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GLN 67
Query: 90 GSVVFRTCPREKNKIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+QI +DP E A AA VE+ IDINMGCP + G+
Sbjct: 68 A---------------VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD--TIALCKRLEACGIIAIGVHGRT 206
ALL PD+ IL ++S +++PV+ KIR ++++ + + K E CGI A+ VHGRT
Sbjct: 113 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGG 245
+A + I+ + Q + IPVIANG +K +++Y G
Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTG 217
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q87KU1|DUSB_VIBPA tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=dusB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEEL-VDHKLVKTERKVNDLLNTID 83
N N +I+APM + PFR L L YGA + SE + + KL KT + +++
Sbjct: 4 GNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWKTSKSKQRMVH--- 60
Query: 84 FVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSL 142
+G R+ +QI +DP+ +AA+ VE+ IDINMGCP +
Sbjct: 61 -----EGESGIRS---------VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVN 106
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAI 200
G+ALL P I IL +++ + +PV+ K R + + + + K E CGI A+
Sbjct: 107 KKLAGSALLQYPTIIEEILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQAL 166
Query: 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+HGRTKA + + I+ + + + IPVIANG +K +++Y G +L
Sbjct: 167 ALHGRTKACMYKGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADAL 221
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Vibrio parahaemolyticus (taxid: 670) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus4l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93
+ APMVR + L FR L Y DL Y+ ++ V++ K D T + D
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRS-IKARDSEFTTNQGD------- 81
Query: 94 FRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST 153
CP +I+Q D +AA V IDIN GCP+++++ G GA L++
Sbjct: 82 ---CP-----LIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINK 133
Query: 154 PDIACNILTTLISNLSIP---VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER 210
P++ +++ + + + P VS KIR+ + A TI LC++ EA G+ I VHGRT ER
Sbjct: 134 PELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEER 193
Query: 211 --PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250
P H + I+MI+ +++ IP++ANG + + + V+ +
Sbjct: 194 HQPVHYDAIKMIK---ENVSIPIVANGDIRSLKEAENVWQMT 232
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|P0ABT5|DUSB_ECOLI tRNA-dihydrouridine synthase B OS=Escherichia coli (strain K12) GN=dusB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Escherichia coli (strain K12) (taxid: 83333) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|P0ABT6|DUSB_ECOL6 tRNA-dihydrouridine synthase B OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dusB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90
N++I APM + PFR L + GA L SE + + V K + ID
Sbjct: 10 NRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------- 62
Query: 91 SVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAA 149
E +QI +DP+ +AA+ VE IDINMGCP + G+A
Sbjct: 63 ---------EPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSA 113
Query: 150 LLSTPDIACNILTTLISNLSIPVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGR 205
LL PD+ +ILT +++ + +PV+ KIR H + IA + E CGI A+ +HGR
Sbjct: 114 LLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIA--QLAEDCGIQALTIHGR 171
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
T+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 172 TRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 306 | ||||||
| 383849955 | 467 | PREDICTED: tRNA-dihydrouridine(20) synth | 0.725 | 0.475 | 0.618 | 3e-78 | |
| 193690494 | 456 | PREDICTED: tRNA-dihydrouridine synthase | 0.676 | 0.453 | 0.655 | 4e-78 | |
| 328787042 | 460 | PREDICTED: tRNA-dihydrouridine synthase | 0.751 | 0.5 | 0.601 | 6e-78 | |
| 380016047 | 460 | PREDICTED: tRNA-dihydrouridine(20) synth | 0.751 | 0.5 | 0.597 | 2e-77 | |
| 340720499 | 450 | PREDICTED: tRNA-dihydrouridine synthase | 0.725 | 0.493 | 0.614 | 6e-77 | |
| 350412745 | 467 | PREDICTED: tRNA-dihydrouridine synthase | 0.725 | 0.475 | 0.614 | 7e-77 | |
| 91082415 | 455 | PREDICTED: similar to tRNA-dihydrouridin | 0.738 | 0.496 | 0.587 | 3e-76 | |
| 307169925 | 467 | tRNA-dihydrouridine synthase 2-like [Cam | 0.735 | 0.481 | 0.574 | 8e-75 | |
| 321458641 | 459 | hypothetical protein DAPPUDRAFT_300841 [ | 0.741 | 0.494 | 0.574 | 3e-74 | |
| 241615739 | 449 | tRNA-dihydrouridine synthase, putative [ | 0.735 | 0.501 | 0.597 | 1e-73 |
| >gi|383849955|ref|XP_003700598.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 138/223 (61%), Positives = 174/223 (78%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+NY NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+VND+L TID++D
Sbjct: 14 LNYENKLILAPMVRIGTLPMRLLALDYGADIVYTEELIDWKLLRSFRRVNDVLGTIDYID 73
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
DG+V FRTCPRE++ ++LQIGT D RAL+ AK +E DVA ID+NMGCPK FSL G M
Sbjct: 74 KTDGTVTFRTCPRERDHVVLQIGTCDAARALKVAKMIEQDVAGIDLNMGCPKLFSLVGKM 133
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL P+ A NIL TL+ NLSIPV+CKIRV + DT+ LC+ L + GI AI VHGRT
Sbjct: 134 GAALLQEPETATNILKTLVDNLSIPVTCKIRVLPDLNDTLELCELLASTGISAIAVHGRT 193
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
ERP+H NR E++R +++ L IPVIANGGSKEI + +F
Sbjct: 194 VEERPQHANRNEVLREISKKLSIPVIANGGSKEIQKHSDIFKF 236
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: |
| >gi|193690494|ref|XP_001952087.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 139/212 (65%), Positives = 170/212 (80%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y NKIILAPMVR+NTLP RLLALDYGAD+VY+EEL+DH+L++ RKVN+ L ++DF+D
Sbjct: 12 YDNKIILAPMVRINTLPMRLLALDYGADIVYTEELIDHRLIRCYRKVNETLESVDFIDKS 71
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
D +VVFRTC REK+ ++LQIGT+DPERA +AA+ VE DVA IDINMGCPK FSL GGMGA
Sbjct: 72 DATVVFRTCSREKHNVVLQIGTSDPERAAKAAQVVEQDVAGIDINMGCPKDFSLKGGMGA 131
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALL PD AC IL+ ++S + IPV+CKIRV + DT+ALCK+L A G+ AI VHGRT
Sbjct: 132 ALLFHPDKACAILSAVVSAVKIPVTCKIRVLQDIDDTVALCKKLAATGVAAICVHGRTIN 191
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240
ERP H NR I+ +++ L IPVIANGGSKEI
Sbjct: 192 ERPMHSNRNHFIKAISEALDIPVIANGGSKEI 223
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328787042|ref|XP_393745.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 139/231 (60%), Positives = 175/231 (75%)
Query: 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL 78
M + +NY NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+ ND+
Sbjct: 1 MIKMERKRLNYENKLILAPMVRIGTLPMRLLALDYGADVVYTEELIDWKLLRSFRRENDV 60
Query: 79 LNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
L TID++D DG+V FRTCP+EK+K++LQIGT D RAL+ AK VE DVA ID+NMGCPK
Sbjct: 61 LGTIDYIDKTDGTVTFRTCPKEKDKVVLQIGTCDAARALKVAKMVEQDVAGIDLNMGCPK 120
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198
FSL G MGAALL P+ A NIL TL+ NL+IPV+CKIRV + TI LC+ L++ GI
Sbjct: 121 LFSLIGKMGAALLKEPETATNILKTLVDNLNIPVTCKIRVLPDIDKTIELCELLQSTGIA 180
Query: 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
AI VHGRT ERP+H NR E+++ ++ L IPVIANGGSKEI Y +F
Sbjct: 181 AIAVHGRTVHERPQHMNRNEVLKKISNRLSIPVIANGGSKEIQKYSDIFKF 231
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380016047|ref|XP_003692004.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/231 (59%), Positives = 175/231 (75%)
Query: 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL 78
M + ++Y NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+ ND+
Sbjct: 1 MIKMERKRLSYENKLILAPMVRIGTLPMRLLALDYGADVVYTEELIDWKLLRSFRRENDV 60
Query: 79 LNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
L TID++D DG+V FRTCP+EK+K++LQIGT D RAL+ AK VE DVA ID+NMGCPK
Sbjct: 61 LGTIDYIDKTDGTVTFRTCPKEKDKVVLQIGTCDAARALKVAKMVEQDVAGIDLNMGCPK 120
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198
FSL G MGAALL P+ A NIL TL+ NL+IPV+CKIRV + TI LC+ L++ GI
Sbjct: 121 LFSLIGKMGAALLKEPETATNILKTLVDNLNIPVTCKIRVLPDIDKTIELCELLQSTGIA 180
Query: 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
AI VHGRT ERP+H NR E+++ ++ L IPVIANGGSKEI Y +F
Sbjct: 181 AIAVHGRTVHERPQHMNRNEVLKKISDRLSIPVIANGGSKEIQKYSDIFKF 231
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: |
| >gi|340720499|ref|XP_003398674.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 137/223 (61%), Positives = 173/223 (77%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+NY NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+ ND+L TID++D
Sbjct: 14 LNYENKLILAPMVRIGTLPMRLLALDYGADIVYTEELIDWKLLRSFRRENDVLGTIDYID 73
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
DG+V FRTC +E+NK++LQIGT D RAL+ AK VE DVA ID+NMGCPK FSL G M
Sbjct: 74 KTDGTVTFRTCLKERNKVVLQIGTCDATRALKVAKMVEQDVAGIDLNMGCPKLFSLVGKM 133
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL P+IA NIL TL+ NLSIPV+CKIRV + T+ LC+ L++ GI AI VHGRT
Sbjct: 134 GAALLKEPEIATNILKTLVDNLSIPVTCKIRVLPDLDKTLELCELLQSTGISAIAVHGRT 193
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
ERP+H NR ++++ ++ L IPVIANGGSKEI Y +F
Sbjct: 194 VNERPQHMNRNDVLKKISDRLAIPVIANGGSKEIQKYSDIFKF 236
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350412745|ref|XP_003489746.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 137/223 (61%), Positives = 173/223 (77%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+NY NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+ ND+L TID++D
Sbjct: 14 LNYENKLILAPMVRIGTLPMRLLALDYGADIVYTEELIDWKLLRSFRRENDVLGTIDYID 73
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
DG+V FRTC +E+NK++LQIGT D RAL+ AK VE DVA ID+NMGCPK FSL G M
Sbjct: 74 KTDGTVTFRTCLKERNKVVLQIGTCDATRALKVAKMVEQDVAGIDLNMGCPKLFSLVGKM 133
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL P+IA NIL TL+ NLSIPV+CKIRV + T+ LC+ L++ GI AI VHGRT
Sbjct: 134 GAALLKEPEIATNILKTLVDNLSIPVTCKIRVLPDLDKTLELCELLQSTGISAIAVHGRT 193
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249
ERP+H NR ++++ ++ L IPVIANGGSKEI Y +F
Sbjct: 194 VNERPQHMNRNDVLKKISDRLAIPVIANGGSKEIQKYSDIFKF 236
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91082415|ref|XP_970120.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Tribolium castaneum] gi|270007514|gb|EFA03962.1| hypothetical protein TcasGA2_TC014107 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 134/228 (58%), Positives = 178/228 (78%), Gaps = 2/228 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
+ Y NKIILAPMVR+ TLP RLL+LD+GAD+VY+EEL+D K +K+ R+ ND+L T+D++D
Sbjct: 8 LTYDNKIILAPMVRVGTLPMRLLSLDHGADIVYTEELIDWKFLKSIRRENDVLGTVDYLD 67
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
DG+VVFRTCPREKN++++Q+GT DP+RAL+ AK +E+DVA IDINMGCPK+FSL GGM
Sbjct: 68 KSDGTVVFRTCPREKNRVVVQLGTCDPQRALKVAKMIENDVAGIDINMGCPKEFSLKGGM 127
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL P+ A +IL+TL N+ IP++CKIRVF + +T+ L K L + GI AI +HGRT
Sbjct: 128 GAALLKQPEKAKSILSTLTQNVKIPITCKIRVFESAEETLDLVKELVSTGISAIAIHGRT 187
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNCA 252
KAERP+H NR I+ + +++ IPV+ANGGSKEI Y + F C
Sbjct: 188 KAERPQHPNRNATIKFIAENVSIPVVANGGSKEIEKYQDIIKFKEECG 235
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307169925|gb|EFN62434.1| tRNA-dihydrouridine synthase 2-like [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 131/228 (57%), Positives = 175/228 (76%)
Query: 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLL 79
A + +NY NK+ILAPMVR+ TLP RLLALDYGAD+VY+EEL+D KL+++ R+ ND+L
Sbjct: 6 APVTRTRLNYDNKLILAPMVRIGTLPMRLLALDYGADIVYTEELIDRKLLRSIRRENDVL 65
Query: 80 NTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQ 139
+TID++D DG+VVFRTCPRE+ ++LQIGT+DP RA E A+ VE DVA ID+NMGCPK+
Sbjct: 66 STIDYIDKTDGTVVFRTCPREREHVVLQIGTSDPLRAAEVARMVEKDVAGIDVNMGCPKK 125
Query: 140 FSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIA 199
FS+ GGMGA+LLS P A NIL +I ++IPV+CKIRV + +T+ LC L + GI A
Sbjct: 126 FSILGGMGASLLSDPRKATNILRKMIETVTIPVTCKIRVLFSLEETLQLCDTLASTGIEA 185
Query: 200 IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247
I +HGRT ERP+H NR ++++ ++ L IPVIANGGSK+I + +F
Sbjct: 186 IAIHGRTIEERPQHPNRNQVLKQISDRLSIPVIANGGSKDIQQHSDIF 233
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321458641|gb|EFX69706.1| hypothetical protein DAPPUDRAFT_300841 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 131/228 (57%), Positives = 173/228 (75%)
Query: 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDF 84
+ +NY +KIILAPMVRM TLP RLLAL YGAD+VY+EE+VD K+V+T+R VN++L T+DF
Sbjct: 2 SRLNYVDKIILAPMVRMGTLPLRLLALRYGADIVYTEEIVDKKMVRTKRVVNEILGTVDF 61
Query: 85 VDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTG 144
+D DGSVVFRTC E ++++ Q+GT+D E AL AK VE DVA D+NMGCPK+FS+ G
Sbjct: 62 IDEFDGSVVFRTCNEESSRVVFQVGTSDAELALNVAKLVEKDVAGFDVNMGCPKEFSIKG 121
Query: 145 GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204
GMGAALL P+ +ILT L+SN SIP++CK+R+ +TI+L ++ CG+ A+ VHG
Sbjct: 122 GMGAALLKQPEKVKDILTNLVSNTSIPITCKMRLLPTIEETISLANIIQNCGVAAVAVHG 181
Query: 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
RTK ERP+H N E I+T+ ++LKIPVIANGGSKEI Y + + A
Sbjct: 182 RTKEERPQHPNNNEAIKTIVENLKIPVIANGGSKEIETYEQILRFHKA 229
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|241615739|ref|XP_002406800.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis] gi|215500870|gb|EEC10364.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis] | Back alignment and taxonomy information |
|---|
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/226 (59%), Positives = 170/226 (75%), Gaps = 1/226 (0%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
I+Y NK+ILAPMVR+ TLP RLLAL YGADLVYSEEL+D++L+K +R N +L T+D++D
Sbjct: 5 IDYKNKVILAPMVRIGTLPMRLLALHYGADLVYSEELIDYRLLKCQRLENQVLGTVDYID 64
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
D +VFRTC +E+ K ILQIGT PERA++ AK VE DVA ID+NMGCPK+FSL GGM
Sbjct: 65 D-DHQIVFRTCEKERGKNILQIGTCSPERAVQVAKLVEKDVAGIDVNMGCPKEFSLKGGM 123
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ D ILT L+ + ++PV+CKIRV DT+AL K +E+ G+ A+GVHGRT
Sbjct: 124 GAALLTQLDKVKAILTALVQSTTLPVTCKIRVLDRLEDTLALGKLIESTGVKALGVHGRT 183
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252
K ERP+H+NR I+ L +HL IPVIANGGS EIVDY + A
Sbjct: 184 KEERPQHKNRNATIKALAEHLTIPVIANGGSSEIVDYEDIERFRVA 229
|
Source: Ixodes scapularis Species: Ixodes scapularis Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 306 | ||||||
| UNIPROTKB|Q9NX74 | 493 | DUS2L "tRNA-dihydrouridine(20) | 0.728 | 0.452 | 0.564 | 5.3e-73 | |
| RGD|1305612 | 493 | Dus2l "dihydrouridine synthase | 0.705 | 0.438 | 0.571 | 1.6e-71 | |
| MGI|MGI:1913619 | 493 | Dus2l "dihydrouridine synthase | 0.705 | 0.438 | 0.571 | 5.3e-71 | |
| UNIPROTKB|Q0VC60 | 493 | DUS2L "Uncharacterized protein | 0.705 | 0.438 | 0.576 | 1.8e-70 | |
| UNIPROTKB|I3LES5 | 493 | DUS2L "Uncharacterized protein | 0.705 | 0.438 | 0.571 | 2.9e-70 | |
| UNIPROTKB|E2RKU2 | 493 | DUS2L "Uncharacterized protein | 0.686 | 0.425 | 0.568 | 3.3e-69 | |
| ZFIN|ZDB-GENE-100922-233 | 504 | dus2l "dihydrouridine synthase | 0.722 | 0.438 | 0.569 | 8.7e-69 | |
| UNIPROTKB|E1C4F6 | 493 | DUS2L "Uncharacterized protein | 0.709 | 0.440 | 0.554 | 1.6e-67 | |
| FB|FBgn0030554 | 473 | CG1434 [Drosophila melanogaste | 0.735 | 0.475 | 0.546 | 9.7e-64 | |
| UNIPROTKB|J3QLD5 | 208 | DUS2L "tRNA-dihydrouridine(20) | 0.666 | 0.980 | 0.565 | 1.5e-58 |
| UNIPROTKB|Q9NX74 DUS2L "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 127/225 (56%), Positives = 166/225 (73%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPKQ+S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE-IVDYGGV 246
HGR + ERP+H E+I+ + L IPVIANGGS + I Y +
Sbjct: 183 HGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDI 227
|
|
| RGD|1305612 Dus2l "dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 124/217 (57%), Positives = 162/217 (74%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCRRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+++++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT+ L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+IR + + L IPVIANGGS +
Sbjct: 183 HGRNRDERPQHPVSCEVIRAIAETLSIPVIANGGSHD 219
|
|
| MGI|MGI:1913619 Dus2l "dihydrouridine synthase 2-like (SMM1, S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
Identities = 124/217 (57%), Positives = 163/217 (75%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+++++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT+ L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E+IR + + L IPVIANGGS +
Sbjct: 183 HGRNRDERPQHPVSCEVIRAIAETLSIPVIANGGSHD 219
|
|
| UNIPROTKB|Q0VC60 DUS2L "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 125/217 (57%), Positives = 162/217 (74%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EELVD K+++ +R VN+ L+T+
Sbjct: 4 NNLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELVDLKMLQCKRVVNEALSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE++K++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQSKVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E I+ + + L IPVIANGGS +
Sbjct: 183 HGRKREERPQHPVSCEAIKAIAETLSIPVIANGGSHD 219
|
|
| UNIPROTKB|I3LES5 DUS2L "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 124/217 (57%), Positives = 162/217 (74%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN+ L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEALSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+++++ Q+GT+D ERAL AK VE+DVA ID+NMGCPK++S
Sbjct: 64 DFVAP-DDRVVFRTCEREQSRVVFQMGTSDAERALAVAKLVENDVAGIDVNMGCPKEYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRLLPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
HGR + ERP+H E I+ + + L IPVIANGGS +
Sbjct: 183 HGRKREERPQHPVSCEAIKAIAETLSIPVIANGGSHD 219
|
|
| UNIPROTKB|E2RKU2 DUS2L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 120/211 (56%), Positives = 161/211 (76%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+DFV P
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAP- 68
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
D VVFRTC RE+++++ Q+GT+D +RAL AK VE+DVA ID+NMGCPK++S GGMGA
Sbjct: 69 DERVVFRTCEREQSRVVFQMGTSDADRALAVAKLVENDVAGIDVNMGCPKEYSTKGGMGA 128
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA 208
ALLS PD IL+TL+ + PV+CKIR+ + DT++L KR+E GI A+ VHGR +
Sbjct: 129 ALLSDPDKIEKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAVTVHGRKRE 188
Query: 209 ERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239
ERP+H E I+ + + + IPVIANGGS +
Sbjct: 189 ERPQHPVSCEAIKAIAETVSIPVIANGGSHD 219
|
|
| ZFIN|ZDB-GENE-100922-233 dus2l "dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 127/223 (56%), Positives = 161/223 (72%)
Query: 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL 78
MAN + + K ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+ + ER ND+
Sbjct: 6 MANT-VGRLCFRQKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMAQCERVENDV 64
Query: 79 LNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPK 138
L TIDFV P D V+FRTC +E +++ Q+GTADPERAL AK VE+DVAA+D+NMGCPK
Sbjct: 65 LQTIDFVAP-DERVMFRTCSKESGRVVFQMGTADPERALAVAKLVENDVAAVDVNMGCPK 123
Query: 139 QFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198
++S GGMG+ALLS P+ ILTTL+ +S PV+CKIR+ DT+ L KR+E G+
Sbjct: 124 EYSTKGGMGSALLSDPEKIEAILTTLVKGISKPVTCKIRILSTIEDTVNLVKRIEKTGVA 183
Query: 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241
AI VHGR K ERPRH + I+ + Q + +PVIANGGS +IV
Sbjct: 184 AIAVHGRMKDERPRHPVHCDYIQAVAQSVSVPVIANGGSSDIV 226
|
|
| UNIPROTKB|E1C4F6 DUS2L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 123/222 (55%), Positives = 163/222 (73%)
Query: 29 YSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88
+ K ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L T+DFV P
Sbjct: 9 FRGKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMMQCKRVVNEILETVDFVAPN 68
Query: 89 DGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGA 148
+ VVFRTC RE++++I Q+G+AD RAL AK VE DVA IDINMGCPK++S GGMGA
Sbjct: 69 E-RVVFRTCERERHRVIFQMGSADAGRALAVAKLVESDVAGIDINMGCPKEYSTKGGMGA 127
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT-- 206
ALLS PD +ILTTL+ + PV+CKIR+ + DT+ L KR+E GI AI VHGR
Sbjct: 128 ALLSDPDKIESILTTLVKGICKPVTCKIRILPSVEDTVDLVKRIEKTGIAAIAVHGRLER 187
Query: 207 -KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV-DYGGV 246
K ERP+H ++I+ +++ + IPVIANGGS + + +YG +
Sbjct: 188 KKEERPQHPVHCDVIKAISEAVSIPVIANGGSHDFIKEYGDI 229
|
|
| FB|FBgn0030554 CG1434 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 124/227 (54%), Positives = 169/227 (74%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++Y NK+ILAPMVR+ TLP RLLAL+ GAD+VY+EELVD KL+K+ R+ N L T+DFVD
Sbjct: 20 LDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDIKLIKSIRRPNPALGTVDFVD 79
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM 146
P DG++VFRTC +E ++++LQ+GT+D RAL K ++ D++ +DINMGCPK+FS+ GGM
Sbjct: 80 PSDGTIVFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGM 139
Query: 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT 206
GAALL+ PD A +IL TL S L IPV+CKIR+ + TI L ++L A GI AIG+H RT
Sbjct: 140 GAALLADPDKAAHILRTLCSGLDIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIHART 199
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV--FSLNC 251
+ ERP+H E++R + Q + IP+IANGGSK + Y + F + C
Sbjct: 200 RDERPQHPAHPEVLRAVAQAVDIPIIANGGSKNMHCYDDLRKFQMEC 246
|
|
| UNIPROTKB|J3QLD5 DUS2L "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 116/205 (56%), Positives = 153/205 (74%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI 82
N ++ Y NK+ILAPMVR+ TLP RLLALDYGAD+VY EEL+D K+++ +R VN++L+T+
Sbjct: 4 NSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTV 63
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSL 142
DFV P D VVFRTC RE+N+++ Q+GT+D ERAL A+ VE+DVA ID+NMGCPKQ+S
Sbjct: 64 DFVAP-DDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYST 122
Query: 143 TGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202
GGMGAALLS PD IL+TL+ PV+CKIR+ + DT++L KR+E GI AI V
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAV 182
Query: 203 HGRTKAERPRHRNRIEMIRTLTQHL 227
HGR + ERP+H E+I+ + L
Sbjct: 183 HGRKREERPQHPVSCEVIKAIADTL 207
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9HUW1 | DUSB_PSEAE | 1, ., -, ., -, ., - | 0.3144 | 0.6601 | 0.6084 | yes | N/A |
| Q7VNP2 | DUSB_HAEDU | 1, ., -, ., -, ., - | 0.3004 | 0.6732 | 0.6437 | yes | N/A |
| Q9KV66 | DUSB_VIBCH | 1, ., -, ., -, ., - | 0.3063 | 0.6797 | 0.6459 | yes | N/A |
| Q9D7B1 | DUS2L_MOUSE | 1, ., 3, ., 1, ., - | 0.5714 | 0.7058 | 0.4381 | yes | N/A |
| O52536 | DUSB_KLEPN | 1, ., -, ., -, ., - | 0.3114 | 0.6633 | 0.6323 | yes | N/A |
| O52539 | DUSB_ERWCA | 1, ., -, ., -, ., - | 0.3106 | 0.6797 | 0.6479 | yes | N/A |
| Q8ZAX7 | DUSB_YERPE | 1, ., -, ., -, ., - | 0.3034 | 0.6830 | 0.6510 | yes | N/A |
| Q9NX74 | DUS2L_HUMAN | 1, ., 3, ., 1, ., - | 0.5760 | 0.7058 | 0.4381 | yes | N/A |
| Q8EJR8 | DUSB_SHEON | 1, ., -, ., -, ., - | 0.3157 | 0.6633 | 0.6304 | yes | N/A |
| Q8CWL2 | DUSB_VIBVU | 1, ., -, ., -, ., - | 0.3276 | 0.6797 | 0.6459 | yes | N/A |
| P0A2R6 | DUSB_SALTY | 1, ., -, ., -, ., - | 0.3070 | 0.6633 | 0.6323 | yes | N/A |
| Q87KU1 | DUSB_VIBPA | 1, ., -, ., -, ., - | 0.3148 | 0.6797 | 0.6459 | yes | N/A |
| P0ABT6 | DUSB_ECOL6 | 1, ., -, ., -, ., - | 0.3304 | 0.6568 | 0.6261 | yes | N/A |
| Q83PZ5 | DUSB_SHIFL | 1, ., -, ., -, ., - | 0.3260 | 0.6568 | 0.6261 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 306 | |||
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 7e-70 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 3e-48 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 2e-45 | |
| TIGR00737 | 319 | TIGR00737, nifR3_yhdG, putative TIM-barrel protein | 2e-36 | |
| PRK10415 | 321 | PRK10415, PRK10415, tRNA-dihydrouridine synthase B | 9e-26 | |
| PRK10550 | 312 | PRK10550, PRK10550, tRNA-dihydrouridine synthase C | 8e-11 | |
| TIGR00742 | 318 | TIGR00742, yjbN, tRNA dihydrouridine synthase A | 4e-10 | |
| cd02810 | 289 | cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogena | 1e-04 | |
| cd02911 | 233 | cd02911, arch_FMN, Archeal FMN-binding domain | 1e-04 | |
| cd02803 | 327 | cd02803, OYE_like_FMN_family, Old yellow enzyme (O | 2e-04 | |
| PRK11815 | 333 | PRK11815, PRK11815, tRNA-dihydrouridine synthase A | 5e-04 | |
| pfam01180 | 290 | pfam01180, DHO_dh, Dihydroorotate dehydrogenase | 0.003 | |
| TIGR01037 | 300 | TIGR01037, pyrD_sub1_fam, dihydroorotate dehydroge | 0.003 | |
| pfam00035 | 66 | pfam00035, dsrm, Double-stranded RNA binding motif | 0.004 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 7e-70
Identities = 85/214 (39%), Positives = 116/214 (54%), Gaps = 18/214 (8%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+ILAPMV + LPFRLL YGADLVY+E + L++ RK LL
Sbjct: 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLL------------ 48
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAAL 150
T E+ +I+Q+G +DPE EAAK V E ID+NMGCP GG GAAL
Sbjct: 49 ----TRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAAL 104
Query: 151 LSTPDIACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRLEACGIIAIGVHGRTKAE 209
L P++ I+ + + IPV+ KIR+ + +E +T+ L K LE G A+ VHGRT+ +
Sbjct: 105 LKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQ 164
Query: 210 RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
R + I + + + IPVIANG + D
Sbjct: 165 RYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDA 198
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 3e-48
Identities = 71/209 (33%), Positives = 107/209 (51%), Gaps = 20/209 (9%)
Query: 34 ILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92
+LAPM + LPFR L +YGA DLV +E + ++ E++ +L
Sbjct: 1 LLAPMAGVTDLPFRRLVREYGAGDLVVTEMVTAKAQLRPEKQRELML------------- 47
Query: 93 VFRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALL 151
E + +Q+G +DP EAAK V + IDINMGCP + GG GAALL
Sbjct: 48 ---PELEEPTPLAVQLGGSDPALLAEAAKLVADLGADIIDINMGCPAKKVTRGGAGAALL 104
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGVHGRTKAE 209
PD+ I+ ++ + IPV+ KIR+ + + + + +R+E G A+ VHGRT+A+
Sbjct: 105 RDPDLVAQIVKAVVKAVDIPVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHGRTRAQ 164
Query: 210 RPRHRNRIEMIRTLTQHLKIPVIANGGSK 238
+ I+ + Q + IPVIANG
Sbjct: 165 NYEGPADWDAIKQVKQAVSIPVIANGDIT 193
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 2e-45
Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 28/242 (11%)
Query: 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNT 81
I N++ILAPM + LPFR LA + GA DL+Y+E + L+ +K LL+
Sbjct: 3 KIGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDE 62
Query: 82 IDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQF 140
++ E+ + +Q+G +DPE EAAK E ID+N GCP
Sbjct: 63 LE----------------EERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPK 106
Query: 141 SLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIA--LCKRLEACGI 197
+ GG GAALL P++ I+ ++ + IPV+ KIR+ ++ D +A + + LE G
Sbjct: 107 VVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGA 166
Query: 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGG------SKEIVDYGGVFSLN 250
A+ VHGRT+A+ + I+ L + + IPVIANG +KE+++Y G +
Sbjct: 167 DALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVM 226
Query: 251 CA 252
Sbjct: 227 IG 228
|
Length = 323 |
| >gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-36
Identities = 72/218 (33%), Positives = 106/218 (48%), Gaps = 29/218 (13%)
Query: 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNT---I 82
NI ++++LAPM + PFR L +YGA L E +V +E V D T +
Sbjct: 3 NIQLKSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCE------MVSSEAIVYDSQRTMRLL 56
Query: 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAA-IDINMGCPKQFS 141
D + ++ I +Q+ +DP+ EAAK E A IDINMGCP
Sbjct: 57 DIAE-------------DETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKI 103
Query: 142 LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV----FHNEADTIALCKRLEACGI 197
G G+ALL PD+ I+ ++ + IPV+ KIR+ H A A + E G
Sbjct: 104 TKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAA--RIAEDAGA 161
Query: 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
A+ +HGRT+A+ ++I + Q ++IPVI NG
Sbjct: 162 QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNG 199
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319 |
| >gnl|CDD|182440 PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 9e-26
Identities = 73/229 (31%), Positives = 111/229 (48%), Gaps = 25/229 (10%)
Query: 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
N++I APM + PFR L + GA L SE + + V K L + +P
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR--LRMVHIDEPGI 66
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGA 148
+V QI +DP+ +AA+ VE IDINMGCP + G+
Sbjct: 67 RTV--------------QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGS 112
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRT 206
ALL PD+ +ILT +++ + +PV+ KIR + + + + E CGI A+ +HGRT
Sbjct: 113 ALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT 172
Query: 207 KAERPRHRNRIEMIRTLTQHLKIPVIANGG------SKEIVDYGGVFSL 249
+A + IR + Q + IPVIANG ++ ++DY G +L
Sbjct: 173 RACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221
|
Length = 321 |
| >gnl|CDD|236713 PRK10550, PRK10550, tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 8e-11
Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 45/231 (19%)
Query: 32 KIILAPMVR-MNTLPFRLLALDYGADLVYSEELVDHKLVKTE--RKVNDLLNTIDFVDPL 88
+++LAPM +++L LL E+ D+ L TE R V+ LL F
Sbjct: 2 RVLLAPMEGVLDSLVRELLT-----------EVNDYDLCITEFLRVVDQLLPVKVF---- 46
Query: 89 DGSVVFRTCPREKNK--------IILQIGTADPERALE-AAKKVEHDVAAIDINMGCPKQ 139
R CP N + +Q+ P+ E AA+ VE +D+N GCP +
Sbjct: 47 -----HRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSK 101
Query: 140 FSLTGGMGAALLSTPDI----ACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRLEA 194
G GA LL P++ A + + ++L PV+ K+R+ + + + ++
Sbjct: 102 TVNGSGGGATLLKDPELIYQGAKAMREAVPAHL--PVTVKVRLGWDSGERKFEIADAVQQ 159
Query: 195 CGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243
G + VHGRTK + R H N + I + Q L IPVIANG EI D+
Sbjct: 160 AGATELVVHGRTKEDGYRAEHIN-WQAIGEIRQRLTIPVIANG---EIWDW 206
|
Length = 312 |
| >gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 4e-10
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 31 NKIILAPMVRMNTLPFR-LLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89
+ +APM+ FR L L L+Y+E + ++ ++K D+L P
Sbjct: 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILK----FSP-- 52
Query: 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGA 148
E++ + LQ+G +DP + AK E I++N+GCP G GA
Sbjct: 53 ----------EESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGA 102
Query: 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV 178
L+ D+ + + + ++IPV+ K R+
Sbjct: 103 CLMGNADLVADCVKAMQEAVNIPVTVKHRI 132
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). It represents a distinct subset by a set of shared unique motifs, a conserved pattern of insertions/deletions relative to other nifR3 homologs, and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria, a spirochete, a cyanobacterium, and Deinococcus radiodurans. NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Protein synthesis, tRNA and rRNA base modification]. Length = 318 |
| >gnl|CDD|239204 cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 28/156 (17%)
Query: 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILT 162
+I +G + E +E A+K+E A+++N+ CP GG G L P+ N+L
Sbjct: 101 LIASVGGSSKEDYVELARKIERAGAKALELNLSCPN----VGG-GRQLGQDPEAVANLLK 155
Query: 163 TLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNR------ 216
+ + + IP+ K+ + + D + L K E G + +
Sbjct: 156 AVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKR 215
Query: 217 --------------IEMIRTLTQHLK--IPVIANGG 236
+ + L L+ IP+I GG
Sbjct: 216 GTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGG 251
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. Length = 289 |
| >gnl|CDD|239237 cd02911, arch_FMN, Archeal FMN-binding domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 111 ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI 170
+ E L AA V + A ++IN C + + G G ALL P+ + + +
Sbjct: 82 SSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKA-LKETGV 140
Query: 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIP 230
PVS KIR + D L + +E G I V A P + ++ IR ++ L I
Sbjct: 141 PVSVKIRAGV-DVDDEELARLIEKAGADIIHV----DAMDPGNHADLKKIRDISTELFI- 194
Query: 231 VIANGG------SKEIVDYG 244
I N +KE+ YG
Sbjct: 195 -IGNNSVTTIESAKEMFSYG 213
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. Length = 233 |
| >gnl|CDD|239201 cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 170 IPVSCKIRVFH------NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNR------- 216
PV ++ + I + K LE G+ A+ V G + P
Sbjct: 209 FPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGY 268
Query: 217 -IEMIRTLTQHLKIPVIANGG 236
+E+ + + +KIPVIA GG
Sbjct: 269 FLELAEKIKKAVKIPVIAVGG 289
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. Length = 327 |
| >gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 5e-04
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 104 IILQIGTADPERALEAAKKVE---HDVAAIDINMGCPK---QFSLTGGMGAALLSTPDIA 157
+ LQ+G +DP EAAK E +D I++N+GCP Q G GA L++ P++
Sbjct: 67 VALQLGGSDPADLAEAAKLAEDWGYD--EINLNVGCPSDRVQ---NGRFGACLMAEPELV 121
Query: 158 CNILTTLISNLSIPVSCKIR 177
+ + + +SIPV+ K R
Sbjct: 122 ADCVKAMKDAVSIPVTVKHR 141
|
Length = 333 |
| >gnl|CDD|216348 pfam01180, DHO_dh, Dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 45/194 (23%), Positives = 72/194 (37%), Gaps = 36/194 (18%)
Query: 73 RKVNDLLNTIDFVDPLDGSVVFRTCPREKNK-----IILQIGTADPERALEAAKKVEHDV 127
R +LN + +P +V+ R K IIL + E +E A+K+
Sbjct: 60 RLPEGVLNAMGLNNPGLDAVLEELLKRRKEYPRPLGIILSKAGSTVEDYVEVARKIGPFA 119
Query: 128 AAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI--RVFHNEADT 185
+++N+ CP T G AL + P++A +L + +PV K+ +
Sbjct: 120 DYLELNVSCPN----TPG-LRALQTDPELAAILLKVVKEVSKVPVLVKLAPDLTDIVIID 174
Query: 186 IALCKRLEACGIIAIGVHGRT--------KAERPRHRNR-------------IEMIRTLT 224
IA G+ I T K E P N +++IR L
Sbjct: 175 IAD-VAAGEDGLTGINATNTTVRGMRIDLKTESPILANGTGGLSGPAIKPIALKVIRELY 233
Query: 225 QHLK--IPVIANGG 236
Q + IP+I GG
Sbjct: 234 QRVGPEIPIIGVGG 247
|
Length = 290 |
| >gnl|CDD|130109 TIGR01037, pyrD_sub1_fam, dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 29/156 (18%)
Query: 104 IILQIGTADPERALEAAKKVEHD---VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNI 160
+I + + E E A+K+E V A ++N+ CP G G A+ P+++ ++
Sbjct: 93 LIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPH----VKGGGIAIGQDPELSADV 148
Query: 161 LTTLISNLSIPVSCKIRVFHNEADTIALCKRLE---ACGIIAI----GVHGRTKAERPRH 213
+ + +PV K+ N D + K E A G+ I G+ K +P
Sbjct: 149 VKAVKDKTDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPIL 206
Query: 214 RNR-------------IEMIRTLTQHLKIPVIANGG 236
N+ + M+ + + + IP+I GG
Sbjct: 207 ANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGG 242
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. Length = 300 |
| >gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Score = 35.0 bits (81), Expect = 0.004
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 264 PKTILYAHCKYKRFEVPKYETVQ----YEKLFRSLVTVNGKQYTS 304
PK++L C+ K + P + + F VTVNGK+Y +
Sbjct: 1 PKSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGT 45
|
Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 306 | |||
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 100.0 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 100.0 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 100.0 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 100.0 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 100.0 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 100.0 | |
| KOG2335|consensus | 358 | 100.0 | ||
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 100.0 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 100.0 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 100.0 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 100.0 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 100.0 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 100.0 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 100.0 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 100.0 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 100.0 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 100.0 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 100.0 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 100.0 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 100.0 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 100.0 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 100.0 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 100.0 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 100.0 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 100.0 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 100.0 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 100.0 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 100.0 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 100.0 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 100.0 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 100.0 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 100.0 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 100.0 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 100.0 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 100.0 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.97 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.97 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.97 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 99.97 | |
| KOG2334|consensus | 477 | 99.97 | ||
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.97 | |
| KOG2333|consensus | 614 | 99.96 | ||
| KOG1436|consensus | 398 | 99.92 | ||
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.88 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.85 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.81 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.8 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.76 | |
| KOG1799|consensus | 471 | 99.68 | ||
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.63 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.57 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 99.56 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.54 | |
| KOG0134|consensus | 400 | 99.53 | ||
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.51 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.48 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.48 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 99.48 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 99.46 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 99.44 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.43 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.4 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 99.4 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.35 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.35 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.35 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.35 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.35 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 99.34 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.33 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 99.32 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 99.32 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 99.3 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.28 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 99.28 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.25 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.2 | |
| PLN02535 | 364 | glycolate oxidase | 99.19 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 99.19 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.15 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 99.13 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 99.11 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.09 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.09 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.04 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 99.04 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 99.04 | |
| PLN02979 | 366 | glycolate oxidase | 99.02 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 99.01 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 98.99 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.97 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 98.96 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 98.95 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 98.94 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.92 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 98.91 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.9 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.84 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.83 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 98.82 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 98.82 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.8 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 98.8 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 98.78 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.76 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 98.76 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 98.75 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 98.73 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 98.71 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.69 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.65 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.64 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.63 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 98.58 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.53 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.52 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.5 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.49 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.49 | |
| KOG0538|consensus | 363 | 98.43 | ||
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.43 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.41 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.39 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.38 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 98.34 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.33 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 98.32 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.29 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 98.29 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 98.29 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 98.28 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.27 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.25 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.24 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 98.24 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 98.24 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.23 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.22 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 98.18 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.13 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 98.12 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 98.11 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 98.11 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.11 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 98.1 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 98.08 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.06 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 98.05 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 98.05 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 98.03 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.02 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.01 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.0 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.99 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 97.98 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 97.97 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 97.97 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 97.97 | |
| PLN02591 | 250 | tryptophan synthase | 97.97 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 97.94 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 97.94 | |
| KOG0623|consensus | 541 | 97.93 | ||
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 97.93 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 97.91 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 97.88 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.87 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.87 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.86 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 97.86 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 97.83 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.82 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.82 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.82 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 97.81 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 97.81 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 97.81 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 97.8 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 97.79 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 97.79 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.79 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.76 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.75 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 97.74 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 97.74 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 97.74 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 97.74 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.74 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.71 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 97.7 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 97.66 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 97.66 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.66 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 97.65 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 97.65 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 97.63 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.62 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 97.59 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 97.57 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.56 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 97.55 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 97.53 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 97.52 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 97.52 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 97.5 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.49 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 97.46 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 97.45 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 97.44 | |
| KOG2550|consensus | 503 | 97.42 | ||
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 97.42 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 97.41 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 97.4 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 97.39 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.37 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 97.36 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 97.34 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.33 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 97.3 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.24 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 97.22 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 97.2 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.2 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 97.2 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 97.19 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 97.19 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.18 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.17 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 97.16 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.16 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 97.15 | |
| PRK08005 | 210 | epimerase; Validated | 97.13 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.12 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 97.11 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 97.08 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 97.07 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 97.07 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 97.06 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.04 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 96.99 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 96.98 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 96.97 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.96 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 96.93 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 96.91 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 96.89 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 96.88 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 96.86 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 96.86 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 96.85 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 96.85 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 96.83 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 96.82 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 96.82 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 96.8 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 96.8 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 96.77 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 96.75 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 96.74 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.73 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 96.72 | |
| PRK06852 | 304 | aldolase; Validated | 96.69 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.69 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 96.68 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 96.68 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 96.68 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.67 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 96.65 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 96.58 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 96.58 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 96.57 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 96.56 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 96.49 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 96.48 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 96.42 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 96.42 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 96.4 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 96.39 | |
| PRK09197 | 350 | fructose-bisphosphate aldolase; Provisional | 96.39 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 96.35 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 96.35 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 96.35 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 96.32 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 96.29 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 96.28 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 96.28 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 96.26 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 96.26 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 96.26 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 96.21 | |
| KOG1606|consensus | 296 | 96.2 | ||
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 96.18 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 96.17 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 96.13 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 96.12 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 96.12 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 96.11 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 96.11 | |
| cd00453 | 340 | FTBP_aldolase_II Fructose/tagarose-bisphosphate al | 96.1 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 96.08 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 96.05 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 96.01 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 95.98 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 95.96 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 95.9 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 95.9 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 95.9 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 95.89 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.84 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 95.83 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 95.8 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 95.79 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 95.73 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 95.73 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.72 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 95.69 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 95.68 | |
| PRK14057 | 254 | epimerase; Provisional | 95.64 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 95.6 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.6 | |
| COG0413 | 268 | PanB Ketopantoate hydroxymethyltransferase [Coenzy | 95.59 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 95.58 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 95.54 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 95.51 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.47 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 95.47 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 95.46 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.46 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 95.43 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 95.39 | |
| TIGR01520 | 357 | FruBisAldo_II_A fructose-bisphosphate aldolase, cl | 95.35 | |
| PF01487 | 224 | DHquinase_I: Type I 3-dehydroquinase; InterPro: IP | 95.33 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 95.29 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 95.26 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 95.25 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 95.2 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 95.19 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 95.14 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 95.13 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 95.09 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 94.98 | |
| cd00946 | 345 | FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis | 94.97 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 94.92 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.91 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 94.91 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 94.88 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 94.81 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 94.74 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 94.74 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.66 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 94.66 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 94.65 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 94.61 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 94.58 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 94.58 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 94.56 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 94.56 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 94.53 | |
| PRK02412 | 253 | aroD 3-dehydroquinate dehydratase; Provisional | 94.53 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 94.49 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 94.46 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 94.43 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 94.34 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 94.32 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 94.31 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 94.28 | |
| KOG2334|consensus | 477 | 94.25 | ||
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 94.24 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 94.2 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 94.17 | |
| PLN02979 | 366 | glycolate oxidase | 94.13 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 94.1 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.08 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 94.07 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 93.98 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 93.97 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 93.86 | |
| PLN02535 | 364 | glycolate oxidase | 93.85 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 93.84 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 93.83 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 93.81 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 93.78 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 93.76 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 93.73 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 93.65 | |
| PRK12399 | 324 | tagatose 1,6-diphosphate aldolase; Reviewed | 93.61 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 93.6 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 93.54 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 93.51 | |
| PRK04452 | 319 | acetyl-CoA decarbonylase/synthase complex subunit | 93.5 | |
| cd08207 | 406 | RLP_NonPhot Ribulose bisphosphate carboxylase like | 93.49 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 93.46 | |
| TIGR01232 | 325 | lacD tagatose 1,6-diphosphate aldolase. This famil | 93.41 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 93.4 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 93.39 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 93.33 | |
| cd00502 | 225 | DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat | 93.32 | |
| COG3684 | 306 | LacD Tagatose-1,6-bisphosphate aldolase [Carbohydr | 93.31 | |
| PRK04161 | 329 | tagatose 1,6-diphosphate aldolase; Reviewed | 93.26 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 93.2 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 93.2 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 93.1 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 93.01 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 92.99 | |
| cd08209 | 391 | RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent | 92.85 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 92.85 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 92.84 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 92.82 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 92.8 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 92.79 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 92.48 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 92.4 | |
| PRK01261 | 229 | aroD 3-dehydroquinate dehydratase; Provisional | 92.39 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 92.37 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 92.34 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 92.25 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 92.18 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 92.17 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 92.11 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 92.07 | |
| PLN03033 | 290 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 92.02 | |
| cd08208 | 424 | RLP_Photo Ribulose bisphosphate carboxylase like p | 91.98 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 91.93 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 91.9 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 91.89 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 91.88 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 91.87 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 91.85 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 91.59 | |
| PF01188 | 67 | MR_MLE: Mandelate racemase / muconate lactonizing | 91.58 | |
| PRK07534 | 336 | methionine synthase I; Validated | 91.58 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 91.56 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 91.54 | |
| cd08148 | 366 | RuBisCO_large Ribulose bisphosphate carboxylase la | 91.43 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 91.35 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 91.33 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 91.33 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 91.3 | |
| KOG3111|consensus | 224 | 91.25 | ||
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 91.21 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 91.0 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 90.98 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 90.93 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 90.83 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 90.65 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 90.61 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 90.55 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 90.5 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 90.48 | |
| KOG4013|consensus | 255 | 90.48 | ||
| PRK09549 | 407 | mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate eno | 90.38 | |
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 90.37 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 90.36 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 90.35 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 90.34 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 90.24 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 90.21 | |
| TIGR03326 | 412 | rubisco_III ribulose bisphosphate carboxylase, typ | 90.2 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 90.17 | |
| TIGR03332 | 407 | salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosp | 90.08 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 90.07 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 90.05 | |
| cd08213 | 412 | RuBisCO_large_III Ribulose bisphosphate carboxylas | 90.04 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 90.01 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 89.96 | |
| cd06543 | 294 | GH18_PF-ChiA-like PF-ChiA is an uncharacterized ch | 89.87 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 89.86 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 89.86 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 89.85 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 89.76 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 89.73 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 89.72 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 89.66 | |
| cd08206 | 414 | RuBisCO_large_I_II_III Ribulose bisphosphate carbo | 89.62 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 89.55 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 89.51 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 89.47 | |
| TIGR01093 | 228 | aroD 3-dehydroquinate dehydratase, type I. Type II | 89.44 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 89.4 | |
| PF00215 | 226 | OMPdecase: Orotidine 5'-phosphate decarboxylase / | 89.3 | |
| KOG4175|consensus | 268 | 89.3 | ||
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 89.29 | |
| PRK08645 | 612 | bifunctional homocysteine S-methyltransferase/5,10 | 89.26 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 89.22 | |
| PRK04208 | 468 | rbcL ribulose bisophosphate carboxylase; Reviewed | 89.21 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 89.21 | |
| CHL00040 | 475 | rbcL ribulose-1,5-bisphosphate carboxylase/oxygena | 89.1 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 89.1 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 89.01 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 88.93 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 88.89 | |
| PRK15129 | 321 | L-Ala-D/L-Glu epimerase; Provisional | 88.89 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 88.88 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 88.76 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 88.65 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 88.64 | |
| PF03599 | 386 | CdhD: CO dehydrogenase/acetyl-CoA synthase delta s | 88.62 |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=346.57 Aligned_cols=226 Identities=35% Similarity=0.550 Sum_probs=205.4
Q ss_pred ccccccccCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCC
Q psy4398 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPRE 100 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (306)
.+++.+.++|++++|||.++||.+||.+++++|+ ++++|||+++....+..+.....+.. . +.
T Consensus 2 ~~~~~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~---------------~-~~ 65 (323)
T COG0042 2 LKIGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDE---------------L-EE 65 (323)
T ss_pred CccccccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCc---------------C-CC
Confidence 4678899999999999999999999999999898 99999999999887655433222111 0 24
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEecc
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~ 178 (306)
+.|+++||+|++|+.++++|+.+++ |+|+||||+|||++++.+.++|+.|+++|+++.+++++++++++ +||+||+|+
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 5789999999999999999999876 99999999999999999999999999999999999999999995 999999999
Q ss_pred CCChHH--HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHh----hh
Q psy4398 179 FHNEAD--TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSL----NC 251 (306)
Q Consensus 179 g~~~~~--~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~----~v 251 (306)
||+..+ ..++++.++++|++.|+||+|++.+.|.+|++|++++++++.++ +|||+||+|.|.+++.++++. +|
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgV 225 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGV 225 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEE
Confidence 998776 88999999999999999999999999999999999999999998 999999999999999999996 67
Q ss_pred hhccccCCCCCc
Q psy4398 252 AFLRNHYPVEKL 263 (306)
Q Consensus 252 ~vGrall~~p~~ 263 (306)
|+||+.|.||++
T Consensus 226 MigRga~~nP~l 237 (323)
T COG0042 226 MIGRGALGNPWL 237 (323)
T ss_pred EEcHHHccCCcH
Confidence 999999999954
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=338.71 Aligned_cols=261 Identities=27% Similarity=0.364 Sum_probs=214.2
Q ss_pred cccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCC
Q psy4398 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKN 102 (306)
Q Consensus 23 ~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 102 (306)
++++++++||+++|||.++||.+||.+++++|+|+++|||+++++...........+ ...+...
T Consensus 2 ~i~~~~~~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~----------------~~~~~~~ 65 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM----------------VHIDEPG 65 (321)
T ss_pred ccCCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHh----------------ccCccCC
Confidence 578999999999999999999999999999999999999999876532211111110 0112346
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
|+++||+|+++++++++|+++++ |+|+||||+|||++++.+.++|+.++++|+++.++++++++++++||++|+|.||+
T Consensus 66 ~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~ 145 (321)
T PRK10415 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA 145 (321)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc
Confidence 89999999999999999998764 99999999999999988999999999999999999999999999999999999886
Q ss_pred hH--HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhcc
Q psy4398 182 EA--DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLR 255 (306)
Q Consensus 182 ~~--~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGr 255 (306)
.+ +..++++.++++|+|+|++|+|+..+.+.++.+|++++++++.+++|||+||||.|+++++++++. +|++||
T Consensus 146 ~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR 225 (321)
T PRK10415 146 PEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGR 225 (321)
T ss_pred CCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEECh
Confidence 54 588999999999999999999999888988889999999999999999999999999999999974 569999
Q ss_pred ccCCCCCchHHHHHHHHHhcC-CCCCcceehh--hccceeeEEEEcCc
Q psy4398 256 NHYPVEKLPKTILYAHCKYKR-FEVPKYETVQ--YEKLFRSLVTVNGK 300 (306)
Q Consensus 256 all~~p~~~~~~l~~~~~~~g-~~~~~~~~~~--~~~~~~~~~~~~~~ 300 (306)
+++.||++-.. ++++++.-. ++.+.+.+.. +.++++.+.++-|+
T Consensus 226 ~~l~nP~if~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (321)
T PRK10415 226 AAQGRPWIFRE-IQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGP 272 (321)
T ss_pred HhhcCChHHHH-HHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh
Confidence 99999954432 345554322 2233344432 55555555554443
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=327.77 Aligned_cols=224 Identities=22% Similarity=0.322 Sum_probs=191.1
Q ss_pred ceEEccCCCCCCHHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEecC
Q psy4398 32 KIILAPMVRMNTLPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGT 110 (306)
Q Consensus 32 ~i~lAPm~~~t~~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g 110 (306)
|+++|||.|+||.+||.+++++| +++++|||++++...........+... ..+. .....+.|+++||+|
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~--~~~~--------~~~~~e~p~~vQl~g 71 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPE--LHNA--------SRTPSGTLVRIQLLG 71 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHH--hccc--------CCCCCCCcEEEEecc
Confidence 79999999999999999998888 899999999987655332211100000 0000 011246799999999
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCCh-HHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNE-ADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~-~~~~ 186 (306)
++|++|+++|+++++ |+|+||||+|||++.+.+.+.|++++++++++.++++++++++ ++||+||+|.|++. ++..
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~ 151 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKF 151 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHH
Confidence 999999999998875 9999999999999999999999999999999999999999988 49999999998754 4588
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVE 261 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p 261 (306)
++++.++++|+|.|+||+|+..+.|.+++ +|+.++++++++++|||+||||.|+++++++++. ++++||+++.||
T Consensus 152 ~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP 231 (312)
T PRK10550 152 EIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIP 231 (312)
T ss_pred HHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCc
Confidence 99999999999999999999999998874 8999999999999999999999999999999964 679999999999
Q ss_pred CchH
Q psy4398 262 KLPK 265 (306)
Q Consensus 262 ~~~~ 265 (306)
++.+
T Consensus 232 ~lf~ 235 (312)
T PRK10550 232 NLSR 235 (312)
T ss_pred HHHH
Confidence 5544
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=324.70 Aligned_cols=236 Identities=29% Similarity=0.444 Sum_probs=200.7
Q ss_pred ccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCc
Q psy4398 24 QANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNK 103 (306)
Q Consensus 24 ~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p 103 (306)
++++.++||+++|||.++|+.+||.+++++|+++++|||++++.+....+.....+ .. +..+.|
T Consensus 1 ~~~~~~~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~---------------~~-~~~~~p 64 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLL---------------DI-AEDETP 64 (319)
T ss_pred CCCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHh---------------hc-CCccce
Confidence 47889999999999999999999999999999999999999887654332221111 11 124679
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
+++||+|+++++|+++|+++++ |||+||||+|||+..+.+.++|+.++++++++.++++++++.+++||+||+|.|++.
T Consensus 65 ~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~ 144 (319)
T TIGR00737 65 ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD 144 (319)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC
Confidence 9999999999999999999975 999999999999766555666666899999999999999999999999999988753
Q ss_pred --HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccc
Q psy4398 183 --ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRN 256 (306)
Q Consensus 183 --~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGra 256 (306)
.+..++++.++++|+|+|++|+|+..+.+.++.+|++++++++.+++|||+||||.|+++++++++. ++++||+
T Consensus 145 ~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 145 AHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred CcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChh
Confidence 3478999999999999999999998888888889999999999999999999999999999999964 5699999
Q ss_pred cCCCCCchHHHHHHHHHhcC
Q psy4398 257 HYPVEKLPKTILYAHCKYKR 276 (306)
Q Consensus 257 ll~~p~~~~~~l~~~~~~~g 276 (306)
++.||++... +.+++....
T Consensus 225 ~l~~P~l~~~-~~~~~~~~~ 243 (319)
T TIGR00737 225 ALGNPWLFRQ-IEQYLTTGK 243 (319)
T ss_pred hhhCChHHHH-HHHHHhCCC
Confidence 9999965433 345555433
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=322.06 Aligned_cols=216 Identities=23% Similarity=0.366 Sum_probs=188.4
Q ss_pred CceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec
Q psy4398 31 NKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG 109 (306)
Q Consensus 31 n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~ 109 (306)
+|+++|||.++||.+||.+++++|+ +++||||++++.+...... .+ .... +.+.|+++||+
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~---------------l~~~-~~e~p~~vQl~ 62 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DI---------------LKFS-PEESPVALQLG 62 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HH---------------cccC-CCCCcEEEEEc
Confidence 5899999999999999999999997 9999999999876643222 11 1112 24679999999
Q ss_pred CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh----HH
Q psy4398 110 TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE----AD 184 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~----~~ 184 (306)
|+++++|+++|+.+++ |+|+||||+|||++++++++||++++++|+++.++++++++++++||+||+|+|++. ++
T Consensus 63 g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~ 142 (318)
T TIGR00742 63 GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEF 142 (318)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHH
Confidence 9999999999999975 999999999999999999999999999999999999999999999999999998753 46
Q ss_pred HHHHHHHHHHcCCcEEEEcccCC-CCCCC-------CCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHH--hhhhh
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTK-AERPR-------HRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFS--LNCAF 253 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~-~~~~~-------~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~--~~v~v 253 (306)
+.++++.++++|++.|++|+|+. .+.++ +|.+|++++++++.+ ++|||+||||.|.+|+++.++ .++|+
T Consensus 143 ~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~g~dgVMi 222 (318)
T TIGR00742 143 LCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMV 222 (318)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHhCCCEEEE
Confidence 78999999999999999999986 34443 345899999999998 899999999999999999986 36799
Q ss_pred ccccCCCCCch
Q psy4398 254 LRNHYPVEKLP 264 (306)
Q Consensus 254 Grall~~p~~~ 264 (306)
||+++.||++-
T Consensus 223 gRgal~nP~if 233 (318)
T TIGR00742 223 GREAYENPYLL 233 (318)
T ss_pred CHHHHhCCHHH
Confidence 99999999443
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=326.72 Aligned_cols=214 Identities=36% Similarity=0.547 Sum_probs=168.5
Q ss_pred EEccCCCCCCHHHHHHHHHcCCC-EEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEecCCC
Q psy4398 34 ILAPMVRMNTLPFRLLALDYGAD-LVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTAD 112 (306)
Q Consensus 34 ~lAPm~~~t~~~~r~~~~~~G~g-~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g~~ 112 (306)
++|||.++|+.+||.+++++|+. +++|||+++..+.+........+.. . +.+.|+++||+|++
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~---------------~-~~~~p~~~Ql~g~~ 64 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPF---------------L-PNERPLIVQLFGND 64 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-G---------------C-C-T-TEEEEEE-S-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccc---------------c-ccccceeEEEeecc
Confidence 68999999999999999999986 9999999988776554433222211 1 23469999999999
Q ss_pred HHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC--hHHHHHHH
Q psy4398 113 PERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALC 189 (306)
Q Consensus 113 ~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~--~~~~~~~a 189 (306)
++.++++|+++.+ |+|+||||||||.+.+.+.++|++|+++|+.+.++++++++.+++||+||+|.|++ .+++.+++
T Consensus 65 ~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~ 144 (309)
T PF01207_consen 65 PEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFA 144 (309)
T ss_dssp HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHH
T ss_pred HHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHH
Confidence 9999999999987 99999999999999999999999999999999999999999999999999999987 67799999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCCCc
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVEKL 263 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p~~ 263 (306)
+.++++|+++|+||+|++.+.|.++++|+.++++++.+++|||+||||.|.+++++.++. ++|+||+++.||++
T Consensus 145 ~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~l 222 (309)
T PF01207_consen 145 RILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWL 222 (309)
T ss_dssp HHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCH
T ss_pred HHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHH
Confidence 999999999999999999999999999999999999999999999999999999999985 67999999999943
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >KOG2335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=316.18 Aligned_cols=214 Identities=33% Similarity=0.554 Sum_probs=194.9
Q ss_pred EEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEecCCCH
Q psy4398 34 ILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADP 113 (306)
Q Consensus 34 ~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g~~~ 113 (306)
++|||.++|+.+||.+++++|+.++||||+.++...+.....+.. +.++ +++.|+|+|++++++
T Consensus 22 i~APMvd~S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~---------------~st~-~~D~PLIvQf~~ndp 85 (358)
T KOG2335|consen 22 IVAPMVDYSELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSE---------------LSTS-PEDRPLIVQFGGNDP 85 (358)
T ss_pred ccCCcccccHHHHHHHHHHhCCceEechHHHHHHHhcCccchhhh---------------cccC-CCCCceEEEEcCCCH
Confidence 899999999999999999999999999999888776543322221 2223 367899999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHH
Q psy4398 114 ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLE 193 (306)
Q Consensus 114 ~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~ 193 (306)
+.+.+||++++..+|+|+||||||+..+.+++||+.|+.+++++.++++++++.++.||++|||++.+.++++++|+.++
T Consensus 86 ~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e 165 (358)
T KOG2335|consen 86 ENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLE 165 (358)
T ss_pred HHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEcccCCCCCC--CCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHh----hhhhccccCCCC-Cc
Q psy4398 194 ACGIIAIGVHGRTKAERP--RHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVE-KL 263 (306)
Q Consensus 194 ~~G~d~i~v~~~~~~~~~--~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p-~~ 263 (306)
++|++.++||||++.++. .+|++|+.++.|++.+. +|||+||+|.+.+|+...+++ |||.||++|.|| .+
T Consensus 166 ~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F 243 (358)
T KOG2335|consen 166 DAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALF 243 (358)
T ss_pred hCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhh
Confidence 999999999999987664 78999999999999996 999999999999999999985 779999999999 44
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=317.66 Aligned_cols=220 Identities=23% Similarity=0.340 Sum_probs=190.4
Q ss_pred cCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEE
Q psy4398 29 YSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQ 107 (306)
Q Consensus 29 l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivq 107 (306)
.++|+++|||.++||.+||.+++++|+ ++++|||++++.+.+... ..++ .. .+.+.|+++|
T Consensus 9 ~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~--~~~l---------------~~-~~~e~p~~vQ 70 (333)
T PRK11815 9 PSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDR--ERLL---------------AF-DPEEHPVALQ 70 (333)
T ss_pred CCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccCH--HHHh---------------cc-CCCCCcEEEE
Confidence 578999999999999999999999996 999999999887655331 1111 11 1246799999
Q ss_pred ecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC----h
Q psy4398 108 IGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN----E 182 (306)
Q Consensus 108 l~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~----~ 182 (306)
|+|+++++|+++|+++++ |+|+||||+|||++++++++||++++++++++.++++++++++++||+||+|.|++ .
T Consensus 71 l~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~ 150 (333)
T PRK11815 71 LGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSY 150 (333)
T ss_pred EeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCH
Confidence 999999999999999986 99999999999999999999999999999999999999999999999999998754 2
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC-CCCC-------CCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh--hh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK-AERP-------RHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL--NC 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~-~~~~-------~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~--~v 251 (306)
++..++++.++++|+|+|++|+|+. .+.+ .+|.+|++++++++.+ ++|||+||||+|+++++++++. +|
T Consensus 151 ~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~aDgV 230 (333)
T PRK11815 151 EFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGV 230 (333)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhcCCEE
Confidence 4578999999999999999999874 2223 2567899999999986 9999999999999999999973 77
Q ss_pred hhccccCCCCCchHH
Q psy4398 252 AFLRNHYPVEKLPKT 266 (306)
Q Consensus 252 ~vGrall~~p~~~~~ 266 (306)
++||+++.||++.+.
T Consensus 231 mIGRa~l~nP~~~~~ 245 (333)
T PRK11815 231 MIGRAAYHNPYLLAE 245 (333)
T ss_pred EEcHHHHhCCHHHHH
Confidence 999999999965554
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=294.79 Aligned_cols=219 Identities=39% Similarity=0.587 Sum_probs=194.7
Q ss_pred ceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEecCC
Q psy4398 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTA 111 (306)
Q Consensus 32 ~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g~ 111 (306)
++++|||.++|+.+||.+++++|+++++|||+.++.+....+.....+ . ..+.+.|+++||+|+
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~p~~~qi~g~ 64 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLL---------------T-RNPEERPLIVQLGGS 64 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhh---------------c-cCccCCCEEEEEcCC
Confidence 589999999999999999999999999999999887765544321111 0 123568999999999
Q ss_pred CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChH-HHHHHH
Q psy4398 112 DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA-DTIALC 189 (306)
Q Consensus 112 ~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~-~~~~~a 189 (306)
++++|.++|+++++ |||+||||+|||++|.++++||++++++++++.++++++++.++.|++||+|.+++.+ +..+++
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~ 144 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELA 144 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHH
Confidence 99999999999986 9999999999999999999999999999999999999999999999999999988775 899999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCCCchH
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVEKLPK 265 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p~~~~ 265 (306)
+.++++|+|+|++|+++..+.+.++.+|++++++++.+++||+++|||.|.+++.++++. ++++||+++.||++.+
T Consensus 145 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~ 224 (231)
T cd02801 145 KALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFR 224 (231)
T ss_pred HHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHH
Confidence 999999999999999987665666779999999999999999999999999999999986 3599999999996665
Q ss_pred H
Q psy4398 266 T 266 (306)
Q Consensus 266 ~ 266 (306)
.
T Consensus 225 ~ 225 (231)
T cd02801 225 E 225 (231)
T ss_pred h
Confidence 4
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=302.01 Aligned_cols=250 Identities=19% Similarity=0.224 Sum_probs=204.4
Q ss_pred ccccccccccCCceEEccC-CCCCCHHHHHHHHHcCCCEEEecceechhhhhh-----hhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPM-VRMNTLPFRLLALDYGADLVYSEELVDHKLVKT-----ERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm-~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
|+++++|++|+|||++||+ .+.++..++.++ +.|+|+++|++++.++.... .+...+++|+.++.+++....+
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~~~~~~~~~~-~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~ 79 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGSGVESLRRID-RSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFL 79 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCCCHHHHHHHH-HcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHH
Confidence 4678999999999999996 578888888876 56999999999998765311 1122357788888876543321
Q ss_pred ---eecCCCCCCceEEEecCCCHHHHHHHHHHHhc---CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 94 ---FRTCPREKNKIILQIGTADPERALEAAKKVEH---DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 94 ---~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~---g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
....++.+.|+++||+|.++++|.++++.+++ ++|+||||+|||+.+ ++|..++++++++.++++++++.
T Consensus 80 ~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~ 155 (300)
T TIGR01037 80 EELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDK 155 (300)
T ss_pred HHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHh
Confidence 11223446799999999999999999999873 499999999999964 47888999999999999999999
Q ss_pred ccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC----------------CCCCCCCC----cHHHHHHHHhhC
Q psy4398 168 LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK----------------AERPRHRN----RIEMIRTLTQHL 227 (306)
Q Consensus 168 ~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~----------------~~~~~~p~----~~~~v~~i~~~~ 227 (306)
+++||+||++ ++.++..++++.++++|+|+|++|++.. .+.++++. .+++++++++.+
T Consensus 156 ~~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 233 (300)
T TIGR01037 156 TDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV 233 (300)
T ss_pred cCCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC
Confidence 9999999999 6677899999999999999999975321 12344443 358899999999
Q ss_pred CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCchH-H--HHHHHHHhcC
Q psy4398 228 KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPK-T--ILYAHCKYKR 276 (306)
Q Consensus 228 ~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~-~--~l~~~~~~~g 276 (306)
++|||++|||.|.+++.++++.| +++||+++.+|.+.+ + +|++||+++|
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g 288 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEG 288 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999864 599999999995544 3 9999999999
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=294.52 Aligned_cols=260 Identities=17% Similarity=0.179 Sum_probs=211.4
Q ss_pred cccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhh-----hhhhcccccccccCCCCCceeee
Q psy4398 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE-----RKVNDLLNTIDFVDPLDGSVVFR 95 (306)
Q Consensus 21 ~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~ 95 (306)
++++.|++|+|||++|++...++..++.++..+|+|+++|++++.++..... +...+++|++++.|++....+.+
T Consensus 1 ~~~~~G~~~~nP~~~aag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~ 80 (296)
T cd04740 1 SVELAGLRLKNPVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEE 80 (296)
T ss_pred CeEECCEEcCCCCEECCCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHH
Confidence 3678999999999999988767778888876666999999999987654211 12246778888888764332222
Q ss_pred ---cCCCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 96 ---TCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 96 ---~~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
..++.+.|+++||.+.++++|.++|+++++ |+|+||||++||+.+. .|..+.++++++.++++++++.+++|
T Consensus 81 ~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~----~g~~~~~~~~~~~eiv~~vr~~~~~P 156 (296)
T cd04740 81 LLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKG----GGMAFGTDPEAVAEIVKAVKKATDVP 156 (296)
T ss_pred HHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCC----CcccccCCHHHHHHHHHHHHhccCCC
Confidence 223356899999999999999999999976 8999999999999643 36778899999999999999999999
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC---------C-------CCCCCC----CcHHHHHHHHhhCCCcE
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK---------A-------ERPRHR----NRIEMIRTLTQHLKIPV 231 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------~-------~~~~~p----~~~~~v~~i~~~~~ipv 231 (306)
|+||++ ++.++..++++.++++|+|+|++++++. . +.++++ ..+++++++++.+++||
T Consensus 157 v~vKl~--~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipi 234 (296)
T cd04740 157 VIVKLT--PNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPI 234 (296)
T ss_pred EEEEeC--CCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCE
Confidence 999999 6667899999999999999999854321 0 223333 35789999999999999
Q ss_pred EEecCCCCHHHHHHHHHhh---hhhccccCCCCCchH-H--HHHHHHHhcCCCCCcceehhhccceeeEEEEcCc
Q psy4398 232 IANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPK-T--ILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGK 300 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~-~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (306)
|++|||.|.+++.++++.| +++||+++.||.+.+ + ++++||+++| |+|+.+++|+
T Consensus 235 i~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g--------------~~~~~~~~g~ 295 (296)
T cd04740 235 IGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEG--------------IKSIEELVGL 295 (296)
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcC--------------CCCHHHHhCc
Confidence 9999999999999999875 499999999995544 3 9999999999 7788777774
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=292.58 Aligned_cols=252 Identities=17% Similarity=0.190 Sum_probs=202.9
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhh-----hhhhcccccccccCCCCCceee
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE-----RKVNDLLNTIDFVDPLDGSVVF 94 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~ 94 (306)
|++++.|++|+|||++|+++-..+..+.......|+|++++++++.++..... +...+++|++++.|+|....+.
T Consensus 2 l~~~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~ 81 (301)
T PRK07259 2 LSVELPGLKLKNPVMPASGTFGFGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIE 81 (301)
T ss_pred CceEECCEECCCCcEECCcCCCCCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHH
Confidence 57889999999999999975444445555455899999999999977653111 1235678888888887543322
Q ss_pred ec---CCCCCCceEEEecCCCHHHHHHHHHHHhc-C-CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc
Q psy4398 95 RT---CPREKNKIILQIGTADPERALEAAKKVEH-D-VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS 169 (306)
Q Consensus 95 ~~---~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g-~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~ 169 (306)
+. .++.+.|+++||+|+++++|.++|+++++ | +|+||||++||+. ..+ |..+.++++++.++++++++.++
T Consensus 82 ~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~---~~g-g~~~~~~~~~~~eiv~~vr~~~~ 157 (301)
T PRK07259 82 EELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNV---KHG-GMAFGTDPELAYEVVKAVKEVVK 157 (301)
T ss_pred HHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCC---CCC-ccccccCHHHHHHHHHHHHHhcC
Confidence 22 22346899999999999999999999986 7 9999999999994 222 66788999999999999999999
Q ss_pred ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC----------------CCCCC----CCcHHHHHHHHhhCCC
Q psy4398 170 IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA----------------ERPRH----RNRIEMIRTLTQHLKI 229 (306)
Q Consensus 170 ~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~----------------~~~~~----p~~~~~v~~i~~~~~i 229 (306)
+||+||++ ++.++..++++.++++|+|+|++++++.. +.+++ |..+++++++++.+++
T Consensus 158 ~pv~vKl~--~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~i 235 (301)
T PRK07259 158 VPVIVKLT--PNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDI 235 (301)
T ss_pred CCEEEEcC--CCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCC
Confidence 99999999 66678999999999999999997543211 12222 3478999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCchH-H--HHHHHHHhcCC
Q psy4398 230 PVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPK-T--ILYAHCKYKRF 277 (306)
Q Consensus 230 pvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~-~--~l~~~~~~~g~ 277 (306)
|||++|||.|.+++.++++.| +++||+++.||.+.+ + ++++||+++||
T Consensus 236 pvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 236 PIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999875 599999999995554 3 99999999993
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=281.81 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=198.4
Q ss_pred ccccccccccCCceEEccCCCC---------CCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM---------NTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~---------t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (306)
.|++|+++++||||++|||... |+.....+. +++|+|+++||.+.+.+.....+...++ .+..++.
T Consensus 5 ~P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~-~~d~~i~-- 81 (337)
T PRK13523 5 SPYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGI-WDDEHIE-- 81 (337)
T ss_pred CCeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceec-CCHHHHH--
Confidence 5789999999999999999632 222333332 3678999999988776533221111112 2222222
Q ss_pred CCceeeecCCCCCCceEEEecCCC-----------------------------------HHHHHHHHHHHhc-CCCEEEE
Q psy4398 89 DGSVVFRTCPREKNKIILQIGTAD-----------------------------------PERALEAAKKVEH-DVAAIDI 132 (306)
Q Consensus 89 ~~~~~~~~~~~~~~p~ivql~g~~-----------------------------------~~~~~~aa~~~~~-g~d~vel 132 (306)
.++.+.+.+|++|.++++||++.+ .++|+++|+++++ |||+|||
T Consensus 82 ~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVei 161 (337)
T PRK13523 82 GLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEI 161 (337)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 156678888889999999996521 2579999999975 9999999
Q ss_pred ccC---------CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------CCChHHHHHHHHHHHHcCC
Q psy4398 133 NMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------FHNEADTIALCKRLEACGI 197 (306)
Q Consensus 133 n~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------g~~~~~~~~~a~~l~~~G~ 197 (306)
|++ ||..|.|+|+||+++++|.+++.||+++||++++.||.+|++. |.+.++..++++.|++.|+
T Consensus 162 h~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gv 241 (337)
T PRK13523 162 HGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGV 241 (337)
T ss_pred ccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCC
Confidence 998 8999999999999999999999999999999999999999997 4578889999999999999
Q ss_pred cEEEEcccCCC----CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCCCchHHHHH
Q psy4398 198 IAIGVHGRTKA----ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVEKLPKTILY 269 (306)
Q Consensus 198 d~i~v~~~~~~----~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p~~~~~~l~ 269 (306)
|+|+|++++.. ..+.+ .++++++++++.+++||+++|+|.|+++++++++. +|++||++++||+++++..+
T Consensus 242 D~i~vs~g~~~~~~~~~~~~-~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~ 320 (337)
T PRK13523 242 DLIDVSSGAVVPARIDVYPG-YQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAK 320 (337)
T ss_pred CEEEeCCCCCCCCCCCCCcc-ccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHH
Confidence 99999987632 11222 36889999999999999999999999999999986 56999999999999887544
Q ss_pred HHHH
Q psy4398 270 AHCK 273 (306)
Q Consensus 270 ~~~~ 273 (306)
.+-.
T Consensus 321 ~~~~ 324 (337)
T PRK13523 321 ELGF 324 (337)
T ss_pred HcCC
Confidence 4433
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=281.57 Aligned_cols=259 Identities=12% Similarity=0.124 Sum_probs=197.8
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|++++++++||||++|||.. +|+...+.+. .++|+|+++||.+.+.+.........++ .+..++.. +
T Consensus 3 ~P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l-~~d~~i~~--~ 79 (343)
T cd04734 3 SPLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNA-SDDEIIPG--F 79 (343)
T ss_pred CCeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCcccc-CCHHHHHH--H
Confidence 578999999999999999962 3444444443 3578999999999876543222211122 22233322 5
Q ss_pred ceeeecCCCCCCceEEEecCCC--------------------------------------HHHHHHHHHHHhc-CCCEEE
Q psy4398 91 SVVFRTCPREKNKIILQIGTAD--------------------------------------PERALEAAKKVEH-DVAAID 131 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~~--------------------------------------~~~~~~aa~~~~~-g~d~ve 131 (306)
+.+.+.+|+++.++++||++.. .++|++||+++++ |||+||
T Consensus 80 ~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVe 159 (343)
T cd04734 80 RRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVE 159 (343)
T ss_pred HHHHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 6678888889999999997421 2579999999875 999999
Q ss_pred EccC---------CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC--------CChHHHHHHHHHHHH
Q psy4398 132 INMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF--------HNEADTIALCKRLEA 194 (306)
Q Consensus 132 ln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g--------~~~~~~~~~a~~l~~ 194 (306)
||++ ||..|.|+|+||+++++|.+++.||++++|++++.++.||+|++ .+.+++.++++.|++
T Consensus 160 ih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~ 239 (343)
T cd04734 160 LQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAA 239 (343)
T ss_pred EccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHh
Confidence 9994 89999999999999999999999999999999987777777764 346789999999999
Q ss_pred cC-CcEEEEcccCCCCC----------C-CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccC
Q psy4398 195 CG-IIAIGVHGRTKAER----------P-RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHY 258 (306)
Q Consensus 195 ~G-~d~i~v~~~~~~~~----------~-~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall 258 (306)
+| +|+|+|+.+..... + ....+++.++++++.+++|||++|+|.|+++++++++. ++++||+++
T Consensus 240 ~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~l 319 (343)
T cd04734 240 EGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHI 319 (343)
T ss_pred cCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhH
Confidence 98 89999975432211 1 12236889999999999999999999999999999985 569999999
Q ss_pred CCCCchHHHHHHHHHhcCCC-CCcceeh
Q psy4398 259 PVEKLPKTILYAHCKYKRFE-VPKYETV 285 (306)
Q Consensus 259 ~~p~~~~~~l~~~~~~~g~~-~~~~~~~ 285 (306)
.||+|+++.. +.+.-+ .+|..|+
T Consensus 320 adP~l~~k~~----~g~~~~i~~C~~C~ 343 (343)
T cd04734 320 ADPHLVAKAR----EGREDDIRPCIGCN 343 (343)
T ss_pred hCccHHHHHH----cCCccCcCcCcCCC
Confidence 9998886532 222212 4577664
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=279.42 Aligned_cols=260 Identities=18% Similarity=0.188 Sum_probs=204.3
Q ss_pred ccccccccccCCceEEccCCCC--------CCHHHHHHHH--HcCCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM--------NTLPFRLLAL--DYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--------t~~~~r~~~~--~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
.|+++++++|+|||+||||+.. |+.....+.+ ++|+|+++||++.+.+.........++++. ..+..
T Consensus 8 ~P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d-~~i~~-- 84 (363)
T COG1902 8 EPLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSD-AQIPG-- 84 (363)
T ss_pred CCeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCCh-hHhHH--
Confidence 6779999999999999999942 3344444432 567999999988777655433333344333 22333
Q ss_pred CceeeecCCCCCCceEEEecCCC----------------------------------------HHHHHHHHHHHhc-CCC
Q psy4398 90 GSVVFRTCPREKNKIILQIGTAD----------------------------------------PERALEAAKKVEH-DVA 128 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~~----------------------------------------~~~~~~aa~~~~~-g~d 128 (306)
++.+.+++|++|.++++||+|.. .++|++||+++++ |||
T Consensus 85 ~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFD 164 (363)
T COG1902 85 LKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFD 164 (363)
T ss_pred HHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 67788889999999999997542 1579999999975 999
Q ss_pred EEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc-------CCChHHHHHHHH
Q psy4398 129 AIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV-------FHNEADTIALCK 190 (306)
Q Consensus 129 ~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~-------g~~~~~~~~~a~ 190 (306)
+||||.+ +|.+|.|+|.||++++||.+++.||+++||++++ .||.+|++. |++.++..++++
T Consensus 165 gVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~ 244 (363)
T COG1902 165 GVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAK 244 (363)
T ss_pred EEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHH
Confidence 9999865 8999999999999999999999999999999995 589999997 345678999999
Q ss_pred HHHHcC-CcEEEEcccCCC--CCC--C-CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhccccCCC
Q psy4398 191 RLEACG-IIAIGVHGRTKA--ERP--R-HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNHYPV 260 (306)
Q Consensus 191 ~l~~~G-~d~i~v~~~~~~--~~~--~-~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGrall~~ 260 (306)
.|++.| +|+|+++..... +.. . ..........+++.+++|+|++|+|+|++.++++++.+ |.+||++++|
T Consensus 245 ~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 245 ALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLAD 324 (363)
T ss_pred HHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcC
Confidence 999999 799999765432 111 1 11244667789999999999999999999999999974 5999999999
Q ss_pred CCchHHHHHHHHHhcC-CCCCcceehh
Q psy4398 261 EKLPKTILYAHCKYKR-FEVPKYETVQ 286 (306)
Q Consensus 261 p~~~~~~l~~~~~~~g-~~~~~~~~~~ 286 (306)
|+|+++. .+.++ ...+|+.|++
T Consensus 325 P~~~~k~----~~g~~~~~~~~~~~~~ 347 (363)
T COG1902 325 PDLVLKA----AEGRELEIRPCIYCNQ 347 (363)
T ss_pred ccHHHHH----HcCCCccccccccccc
Confidence 9988763 22222 2378999987
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=275.74 Aligned_cols=257 Identities=14% Similarity=0.117 Sum_probs=200.0
Q ss_pred ccccccccccCCceEEccCCCCCC-HHHHHHHHHcCCCEEEecceechhhhh----hh---------hhhhccccccccc
Q psy4398 20 ANANQANINYSNKIILAPMVRMNT-LPFRLLALDYGADLVYSEELVDHKLVK----TE---------RKVNDLLNTIDFV 85 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~-~~~r~~~~~~G~g~~~te~~~~~~~~~----~~---------~~~~~~l~~~~~~ 85 (306)
|++++.|++|+|||++|+.+-... ..++. ....|+|.++|++++.++... .. ....+++|++++.
T Consensus 2 L~v~~~Gl~l~nPv~~ASg~~~~~~e~~~~-~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~ 80 (325)
T cd04739 2 LSTTYLGLSLKNPLVASASPLSRNLDNIRR-LEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRY 80 (325)
T ss_pred ceEEECCEecCCCCEeCCcCCCCCHHHHHH-HHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccccccccc
Confidence 578899999999999998775344 44555 558999999999998775211 10 1145788999999
Q ss_pred CCCCCceeeec---CCCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHH
Q psy4398 86 DPLDGSVVFRT---CPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL 161 (306)
Q Consensus 86 ~~~~~~~~~~~---~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv 161 (306)
|+|....+.+. .+..+.|+++||+|.++++|.++++.+++ |+|+||||++||+. ..+.+|..+ ++.+.+++
T Consensus 81 n~g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~--~~~~~g~~~---~~~~~eiv 155 (325)
T cd04739 81 NLGPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPT--DPDISGAEV---EQRYLDIL 155 (325)
T ss_pred CcCHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC--CCCcccchH---HHHHHHHH
Confidence 98764432221 12236799999999999999999999875 99999999999653 234455543 46789999
Q ss_pred HHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------CCCCC----CCcHHHHHHHH
Q psy4398 162 TTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------ERPRH----RNRIEMIRTLT 224 (306)
Q Consensus 162 ~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~~~~~----p~~~~~v~~i~ 224 (306)
+++++.+++||+||++ ++.++..++++.++++|+|+|+++++... +.+++ |..++++++++
T Consensus 156 ~~v~~~~~iPv~vKl~--p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~ 233 (325)
T cd04739 156 RAVKSAVTIPVAVKLS--PFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILS 233 (325)
T ss_pred HHHHhccCCCEEEEcC--CCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHH
Confidence 9999999999999999 66668999999999999999999887521 11223 23578999999
Q ss_pred hhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC-CC-CchHH--HHHHHHHhcCCC-CCccee
Q psy4398 225 QHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP-VE-KLPKT--ILYAHCKYKRFE-VPKYET 284 (306)
Q Consensus 225 ~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~-~p-~~~~~--~l~~~~~~~g~~-~~~~~~ 284 (306)
+.+++|||++|||.|.+|+.+.+..|+ |+||+++. +| ...++ +|++||+++||+ ..++.+
T Consensus 234 ~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~~i~e~~G 301 (325)
T cd04739 234 GRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYESVQQLRG 301 (325)
T ss_pred cccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCCCHHHHhc
Confidence 999999999999999999999998754 99999977 79 55555 999999999954 333333
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=276.19 Aligned_cols=256 Identities=16% Similarity=0.132 Sum_probs=204.5
Q ss_pred eeeccc-ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh--hh-----hhhccccccccc
Q psy4398 14 FYVLDM-ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT--ER-----KVNDLLNTIDFV 85 (306)
Q Consensus 14 ~~~~~~-~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~--~~-----~~~~~l~~~~~~ 85 (306)
|+..++ ++++++|++|+|||++|++...+...++.+ ...|+|.++|++++.++.... .+ ...+++|++++.
T Consensus 42 ~~~~~~~L~~~~~Gl~l~nPi~~AsG~~~~~~~~~~~-~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~ 120 (344)
T PRK05286 42 LTYTDPRLPVTVMGLTFPNPVGLAAGFDKNGEAIDAL-GALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFN 120 (344)
T ss_pred cCCCCCCCceEECCEECCCCCEECCCCCCChHHHHHH-HHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCC
Confidence 344455 899999999999999999987666556664 489999999999997644311 11 124788999999
Q ss_pred CCCCCceeeecCCC-CCCceEEEecCC-------CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHH
Q psy4398 86 DPLDGSVVFRTCPR-EKNKIILQIGTA-------DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157 (306)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~p~ivql~g~-------~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~ 157 (306)
|+|....+.+..+. .+.|+++||+++ ..++|++.++.+.+++|+||||++||+.. |....++++.+
T Consensus 121 n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~------g~~~~~~~~~~ 194 (344)
T PRK05286 121 NDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP------GLRDLQYGEAL 194 (344)
T ss_pred CHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC------CcccccCHHHH
Confidence 88754433222111 467999999875 57899999998887899999999999953 23347899999
Q ss_pred HHHHHHHHhccc-----ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------CCCCCC----C
Q psy4398 158 CNILTTLISNLS-----IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------ERPRHR----N 215 (306)
Q Consensus 158 ~eiv~~v~~~~~-----~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~~~~~p----~ 215 (306)
.++++++++.++ +||+||++.+.+.++..++++.++++|+|+|++++++.+ +.++++ .
T Consensus 195 ~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~ 274 (344)
T PRK05286 195 DELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFER 274 (344)
T ss_pred HHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHH
Confidence 999999999987 999999997666678999999999999999999987531 234443 3
Q ss_pred cHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCch-HH--HHHHHHHhcC
Q psy4398 216 RIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLP-KT--ILYAHCKYKR 276 (306)
Q Consensus 216 ~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~-~~--~l~~~~~~~g 276 (306)
.|++++++++.+ ++|||++|||.|.+|+.+.+..| ||+||+++. ||.+. ++ +|++||+++|
T Consensus 275 ~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 275 STEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 788999999999 89999999999999999999874 599999976 69554 44 9999999986
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=281.82 Aligned_cols=260 Identities=18% Similarity=0.168 Sum_probs=200.7
Q ss_pred ccccccccccCCceEEccCCCCCC-HHHHHHHHHcCCCEEEecceechhhhhh--hh---hhhcccccccccCCCCCc--
Q psy4398 20 ANANQANINYSNKIILAPMVRMNT-LPFRLLALDYGADLVYSEELVDHKLVKT--ER---KVNDLLNTIDFVDPLDGS-- 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~-~~~r~~~~~~G~g~~~te~~~~~~~~~~--~~---~~~~~l~~~~~~~~~~~~-- 91 (306)
|++++.|++|+|||++|+++-... ...+.+. +.|+|.+++++++ .+.... .+ ...+..+.+++.|++...
T Consensus 4 L~~~~~Gl~l~nPv~~aag~~~~~~~~~~~~~-~~g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~ 81 (420)
T PRK08318 4 LSITFCGIKSPNPFWLASAPPTNKYYNVARAF-EAGWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDR 81 (420)
T ss_pred ceEEECCEecCCCcEeCCcCCCCCHHHHHHHH-HhCCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCccccccc
Confidence 678999999999999999974333 3345544 5799999999998 222211 11 112334556677764311
Q ss_pred ----e---eeecCCC-CCCceEEEecCC-CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHH
Q psy4398 92 ----V---VFRTCPR-EKNKIILQIGTA-DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL 161 (306)
Q Consensus 92 ----~---~~~~~~~-~~~p~ivql~g~-~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv 161 (306)
. +.+..+. .+.|+++||+|. ++++|.++++.+++ |+|+||||++||++ ....+.|+.++++++.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~-~~~~~~g~~~~~~~~~~~~i~ 160 (420)
T PRK08318 82 PLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHG-MSERGMGSAVGQVPELVEMYT 160 (420)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-ccccCCcccccCCHHHHHHHH
Confidence 0 1111111 247899999998 99999999999876 99999999999994 344568899999999999999
Q ss_pred HHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEE---------------------cccCCCCCCCCCC----c
Q psy4398 162 TTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV---------------------HGRTKAERPRHRN----R 216 (306)
Q Consensus 162 ~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v---------------------~~~~~~~~~~~p~----~ 216 (306)
+++++.+.+||+||++ ++.++..++++.++++|+|+|++ |+++..+.+++++ .
T Consensus 161 ~~v~~~~~~Pv~vKl~--p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~ 238 (420)
T PRK08318 161 RWVKRGSRLPVIVKLT--PNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIA 238 (420)
T ss_pred HHHHhccCCcEEEEcC--CCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHH
Confidence 9999999999999999 67777899999999999999994 2333445667765 5
Q ss_pred HHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CC-CchHH--HHHHHHHhcCCC-CCccee
Q psy4398 217 IEMIRTLTQHL---KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VE-KLPKT--ILYAHCKYKRFE-VPKYET 284 (306)
Q Consensus 217 ~~~v~~i~~~~---~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p-~~~~~--~l~~~~~~~g~~-~~~~~~ 284 (306)
|++++++++++ ++|||++|||.|.+|+.+.+..| ||+||+++. +| ...++ +|++||+++|++ ...+.+
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~~si~e~iG 317 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGFASLEDMVG 317 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcCcchHHHHhc
Confidence 99999999987 79999999999999999999875 599999877 78 44444 999999999965 444443
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=273.56 Aligned_cols=244 Identities=16% Similarity=0.181 Sum_probs=193.4
Q ss_pred ccccccc-cccCCceEEccCCC--------CCCHHHHHHH--HHcCCCEEEecceechhhhhhhh---hhhccccccccc
Q psy4398 20 ANANQAN-INYSNKIILAPMVR--------MNTLPFRLLA--LDYGADLVYSEELVDHKLVKTER---KVNDLLNTIDFV 85 (306)
Q Consensus 20 ~~~~~~~-l~l~n~i~lAPm~~--------~t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~---~~~~~l~~~~~~ 85 (306)
.|++|++ ++|||||++|||.. +|+.....+. +++|+|+++||.+.+.+.....+ ...++ .+.+++
T Consensus 3 ~P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~-~~d~~i 81 (338)
T cd04733 3 QPLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVL-ESGEDL 81 (338)
T ss_pred CCeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCccc-CCHHHH
Confidence 5789994 99999999999973 2334444443 25789999999887765432222 11122 222233
Q ss_pred CCCCCceeeecCCCCCCceEEEecCCC-----------------------------------------HHHHHHHHHHHh
Q psy4398 86 DPLDGSVVFRTCPREKNKIILQIGTAD-----------------------------------------PERALEAAKKVE 124 (306)
Q Consensus 86 ~~~~~~~~~~~~~~~~~p~ivql~g~~-----------------------------------------~~~~~~aa~~~~ 124 (306)
.. ++.+.+.+|+.|.++++||++.. .++|++||++++
T Consensus 82 ~~--~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~ 159 (338)
T cd04733 82 EA--FREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQ 159 (338)
T ss_pred HH--HHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 22 56678888889999999986510 257999999997
Q ss_pred c-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEec------cCCChHHHH
Q psy4398 125 H-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIR------VFHNEADTI 186 (306)
Q Consensus 125 ~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir------~g~~~~~~~ 186 (306)
+ |||+||||++| |..|.|+|+||+++++|++++.|++++||++++ +||.+|++ .|++.++..
T Consensus 160 ~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~ 239 (338)
T cd04733 160 EAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDAL 239 (338)
T ss_pred HcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHH
Confidence 5 99999999996 999999999999999999999999999999994 79999998 368888999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCC-----------CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hh
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPR-----------HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NC 251 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~-----------~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v 251 (306)
++++.|++.|+|+|+||+++..+... ....++++++|++++++||+++|+|.++++++++++. +|
T Consensus 240 ~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V 319 (338)
T cd04733 240 EVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGI 319 (338)
T ss_pred HHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 99999999999999999886433221 1123678889999999999999999999999999986 46
Q ss_pred hhccccCCCCCchHH
Q psy4398 252 AFLRNHYPVEKLPKT 266 (306)
Q Consensus 252 ~vGrall~~p~~~~~ 266 (306)
++||++++||+++++
T Consensus 320 ~lgR~~iadP~~~~k 334 (338)
T cd04733 320 GLARPLALEPDLPNK 334 (338)
T ss_pred eeChHhhhCccHHHH
Confidence 999999999988765
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=265.16 Aligned_cols=260 Identities=20% Similarity=0.211 Sum_probs=209.6
Q ss_pred ccccccccccCCceEEccCCCC-CCHHHHHHHHHcCCCEEEecceechhhhhh-----hh--hhhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVRM-NTLPFRLLALDYGADLVYSEELVDHKLVKT-----ER--KVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~-t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~~~~ 91 (306)
+++++.|++|+||+++|++++. +...++.+. ..|+|.+++++++.++.... .+ ...+++|.+++.|+|...
T Consensus 2 l~~~~~Gl~f~NPl~lAaG~~~~~~~~~~~~~-~~g~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~ 80 (310)
T COG0167 2 LSTEILGLKFPNPLGLAAGFDGKNGEELDALA-ALGFGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADA 80 (310)
T ss_pred CceeecceecCCCCeEcccCCccCHHHHHHHH-hcCCceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHH
Confidence 5678999999999999999986 445566655 55699999999998764321 11 226789999999998755
Q ss_pred eeee---cCCC---CCCceEEEecCCCHHHHHHHHHHHhc-C-CCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 92 VVFR---TCPR---EKNKIILQIGTADPERALEAAKKVEH-D-VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 92 ~~~~---~~~~---~~~p~ivql~g~~~~~~~~aa~~~~~-g-~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
.+.+ ...+ .+.+++.+..+...++|.+.+..++. + +|+||||++|||. + + |..+.++++.+.+++++
T Consensus 81 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt---~-g-~~~l~~~~e~l~~l~~~ 155 (310)
T COG0167 81 FLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNT---P-G-GRALGQDPELLEKLLEA 155 (310)
T ss_pred HHHHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCC---C-C-hhhhccCHHHHHHHHHH
Confidence 4332 1111 34568888888899999999998875 6 8999999999994 2 2 77888899999999999
Q ss_pred HHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC-----------------CCCCCC----CCcHHHHHH
Q psy4398 164 LISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK-----------------AERPRH----RNRIEMIRT 222 (306)
Q Consensus 164 v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~-----------------~~~~~~----p~~~~~v~~ 222 (306)
+++...+||.||++ |+.++..++|+.++++|+|+|++...+. .+.+++ |..++++++
T Consensus 156 vk~~~~~Pv~vKl~--P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~ 233 (310)
T COG0167 156 VKAATKVPVFVKLA--PNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAE 233 (310)
T ss_pred HHhcccCceEEEeC--CCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHH
Confidence 99999999999999 7889999999999999999999765221 123333 457899999
Q ss_pred HHhhCC--CcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CC-CchHH--HHHHHHHhcCCCCCcceehhhccceee
Q psy4398 223 LTQHLK--IPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VE-KLPKT--ILYAHCKYKRFEVPKYETVQYEKLFRS 293 (306)
Q Consensus 223 i~~~~~--ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p-~~~~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~ 293 (306)
++++++ +|||++|||.|.+|+.+.+.+| +|+|++++. +| .+.++ +|.+||+++| |+|
T Consensus 234 l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g--------------~~s 299 (310)
T COG0167 234 LYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKG--------------FES 299 (310)
T ss_pred HHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcC--------------CCC
Confidence 999986 9999999999999999999875 499999865 59 55555 9999999999 888
Q ss_pred EEEEcCcc
Q psy4398 294 LVTVNGKQ 301 (306)
Q Consensus 294 ~~~~~~~~ 301 (306)
+++++|.-
T Consensus 300 i~d~iG~~ 307 (310)
T COG0167 300 IQDIIGSA 307 (310)
T ss_pred HHHHhchh
Confidence 88887753
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=254.47 Aligned_cols=215 Identities=23% Similarity=0.300 Sum_probs=167.8
Q ss_pred ceEEccCCCCCCHHHHH-HHHHcCCCEE------Eecceechhhhhhhhhhhcccccc--cccCCCCCceeeecCCCCCC
Q psy4398 32 KIILAPMVRMNTLPFRL-LALDYGADLV------YSEELVDHKLVKTERKVNDLLNTI--DFVDPLDGSVVFRTCPREKN 102 (306)
Q Consensus 32 ~i~lAPm~~~t~~~~r~-~~~~~G~g~~------~te~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~ 102 (306)
||++|||.+.||.+||. ++..+|++++ .+++..+..+....+.. ++.+. .++ +......++.+.
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~e--f~~~~~~~~~-----~~~~~~~~~~~~ 73 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKE--FLPDDPLEFI-----EGEIKALKDSNV 73 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCcc--ccccchHHHH-----HHHHHHhhccCC
Confidence 78999999999999999 4555565444 22333232333222211 11110 011 011112233467
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
|+++||.|++++++.++++.+++++|+||||+|||++.+.+.++|+.++++|+.+.++++++++ .++||+||+|.+++
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~- 151 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD- 151 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC-
Confidence 9999999999999999999998777999999999999988999999999999999999999998 59999999999887
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
++..++++.++++|+|.||++.+... .+.+|+.+++++ +++|||+||||.|.++++++++.| ||+||+ .
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~g----~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~--~ 223 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDPG----NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVARA--S 223 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCCC----CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC--C
Confidence 78999999999999999988654321 356899998887 789999999999999999999875 599999 8
Q ss_pred CCCc
Q psy4398 260 VEKL 263 (306)
Q Consensus 260 ~p~~ 263 (306)
+|++
T Consensus 224 ~p~~ 227 (233)
T cd02911 224 LPEN 227 (233)
T ss_pred CchH
Confidence 8843
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=262.55 Aligned_cols=241 Identities=18% Similarity=0.173 Sum_probs=190.5
Q ss_pred ccccccccccCCceEEccCC-CCCCHHHHHHHHHcCCCEEEecceech-hhhh--hhh---hhhcccccccccCCC----
Q psy4398 20 ANANQANINYSNKIILAPMV-RMNTLPFRLLALDYGADLVYSEELVDH-KLVK--TER---KVNDLLNTIDFVDPL---- 88 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~-~~t~~~~r~~~~~~G~g~~~te~~~~~-~~~~--~~~---~~~~~l~~~~~~~~~---- 88 (306)
+++++.|++|+|||++|+++ +.+...++.+. ..|+|++++++++.+ +... ..+ ...+..|.++|.|.+
T Consensus 2 l~~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~-~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~ 80 (299)
T cd02940 2 LSVTFCGIKFPNPFGLASAPPTTSYPMIRRAF-EAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISE 80 (299)
T ss_pred CceEECCEEcCCCCEeCCcCCCCCHHHHHHHH-HhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccc
Confidence 57889999999999999987 34445566655 569999999999988 4332 111 123445677777743
Q ss_pred --CCce---eeecCCCC-CCceEEEecCC-CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHH
Q psy4398 89 --DGSV---VFRTCPRE-KNKIILQIGTA-DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNI 160 (306)
Q Consensus 89 --~~~~---~~~~~~~~-~~p~ivql~g~-~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~ei 160 (306)
.... +.+..... +.|+++|++|. ++++|.++++++++ |+|+||||++||+. ....++|+.++++++.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~-~~~~~~G~~l~~~~~~~~~i 159 (299)
T cd02940 81 KPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG-MPERGMGAAVGQDPELVEEI 159 (299)
T ss_pred cCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCCchhhccCHHHHHHH
Confidence 1111 11111112 57999999998 99999999999975 99999999999997 34567899999999999999
Q ss_pred HHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc---------------------ccCCCCCCCCCCc---
Q psy4398 161 LTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH---------------------GRTKAERPRHRNR--- 216 (306)
Q Consensus 161 v~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~---------------------~~~~~~~~~~p~~--- 216 (306)
++++++.+++||+||++ ++.++..++++.++++|+|+|+++ +++..+.+++++.
T Consensus 160 v~~v~~~~~~Pv~vKl~--~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~ 237 (299)
T cd02940 160 CRWVREAVKIPVIAKLT--PNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPI 237 (299)
T ss_pred HHHHHHhcCCCeEEECC--CCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchH
Confidence 99999999999999999 666789999999999999999853 3444556776655
Q ss_pred -HHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCch
Q psy4398 217 -IEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLP 264 (306)
Q Consensus 217 -~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~ 264 (306)
|++++++++++ ++|||++|||.|.+|+.+.+..| ||+||+++. +|...
T Consensus 238 ~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~ 292 (299)
T cd02940 238 ALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIV 292 (299)
T ss_pred HHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHH
Confidence 89999999999 89999999999999999999875 599999866 88443
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=275.02 Aligned_cols=265 Identities=15% Similarity=0.155 Sum_probs=200.9
Q ss_pred ccccccccccCCceEEccCCC--C-------CCHHHHHHH--HHcCCCEEEecceechhhhhhh--hhhhc-cccccccc
Q psy4398 20 ANANQANINYSNKIILAPMVR--M-------NTLPFRLLA--LDYGADLVYSEELVDHKLVKTE--RKVND-LLNTIDFV 85 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~--~-------t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~--~~~~~-~l~~~~~~ 85 (306)
.|+++++++||||+++|||.. . |+.....+. +++|+|+++||.+.+.+..... ..... .++..+.+
T Consensus 3 ~P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i 82 (382)
T cd02931 3 EPIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFI 82 (382)
T ss_pred CCeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHHh
Confidence 578999999999999999962 2 223333332 3578999999988776532111 01101 12222222
Q ss_pred CCCCCceeeecCCCCCCceEEEecCC-C----------------------------------------HHHHHHHHHHHh
Q psy4398 86 DPLDGSVVFRTCPREKNKIILQIGTA-D----------------------------------------PERALEAAKKVE 124 (306)
Q Consensus 86 ~~~~~~~~~~~~~~~~~p~ivql~g~-~----------------------------------------~~~~~~aa~~~~ 124 (306)
. .++.+.+++|++|.++++||++. . .++|+++|++++
T Consensus 83 ~--~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~ 160 (382)
T cd02931 83 R--TAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAK 160 (382)
T ss_pred H--HHHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 2 15678888888999999999642 0 156999999997
Q ss_pred c-CCCEEEEcc---C-------CCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc-------------
Q psy4398 125 H-DVAAIDINM---G-------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV------------- 178 (306)
Q Consensus 125 ~-g~d~veln~---g-------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~------------- 178 (306)
+ |||+||||+ | +|..|.|+|+||+++++|++++.||+++||+++ ++||.+|++.
T Consensus 161 ~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~ 240 (382)
T cd02931 161 EAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALP 240 (382)
T ss_pred HcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccccccc
Confidence 5 999999998 5 488999999999999999999999999999998 5799999984
Q ss_pred -------CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC-------CC-CCcHHHHHHHHhhCCCcEEEecCCCCHHHH
Q psy4398 179 -------FHNEADTIALCKRLEACGIIAIGVHGRTKAERP-------RH-RNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243 (306)
Q Consensus 179 -------g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~-------~~-p~~~~~v~~i~~~~~ipvia~GGI~s~~~~ 243 (306)
|++.++..++++.++++|+|+|++|+++....+ .+ ...+++++++++.+++|||++|+|++++++
T Consensus 241 ~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~ 320 (382)
T cd02931 241 GEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELA 320 (382)
T ss_pred ccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHH
Confidence 345678999999999999999999987643211 11 123678899999999999999999999999
Q ss_pred HHHHHh----hhhhccccCCCCCchHHHHHHHHHhcCCC-CCcceehh--hccc
Q psy4398 244 GGVFSL----NCAFLRNHYPVEKLPKTILYAHCKYKRFE-VPKYETVQ--YEKL 290 (306)
Q Consensus 244 ~~~l~~----~v~vGrall~~p~~~~~~l~~~~~~~g~~-~~~~~~~~--~~~~ 290 (306)
+++++. +|++||+++.||+++++. .+.+.-+ .+|+.|++ +.+.
T Consensus 321 ~~~l~~g~~D~V~~gR~~ladP~l~~k~----~~g~~~~i~~Ci~Cn~~C~~~~ 370 (382)
T cd02931 321 SEAINEGIADMISLGRPLLADPDVVNKI----RRGRFKNIRPCISCHDGCLGRM 370 (382)
T ss_pred HHHHHcCCCCeeeechHhHhCccHHHHH----HcCCcccCcCChhhHHHHhhHh
Confidence 999985 569999999999888663 2233222 67999986 5544
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=271.11 Aligned_cols=263 Identities=14% Similarity=0.101 Sum_probs=197.3
Q ss_pred ccccccc-cccCCceEEccCCC--------CCCHHHHHHHHHc-CCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 20 ANANQAN-INYSNKIILAPMVR--------MNTLPFRLLALDY-GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~-l~l~n~i~lAPm~~--------~t~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
.|+++++ ++|||||++|||.. +|+.....+.+++ |+|+++||.+.+.+.........+ +.+..++..
T Consensus 3 ~P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~-~~~d~~i~~-- 79 (353)
T cd04735 3 EPFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFS-ADDDSDIPG-- 79 (353)
T ss_pred CCEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCce-ecChhhhHH--
Confidence 4789998 99999999999972 2344444443322 599999999887654322211112 223333332
Q ss_pred CceeeecCCCCCCceEEEecCCC----------------------------------------HHHHHHHHHHHhc-CCC
Q psy4398 90 GSVVFRTCPREKNKIILQIGTAD----------------------------------------PERALEAAKKVEH-DVA 128 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~~----------------------------------------~~~~~~aa~~~~~-g~d 128 (306)
++.+.+.+|++|.++++||++.+ .++|+++|+++++ |||
T Consensus 80 ~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfD 159 (353)
T cd04735 80 LRKLAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFD 159 (353)
T ss_pred HHHHHHHHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 67788888889999999996421 2579999999975 999
Q ss_pred EEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc----ccEEEEecc--------CCChHHHHH
Q psy4398 129 AIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS----IPVSCKIRV--------FHNEADTIA 187 (306)
Q Consensus 129 ~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~----~pv~vKir~--------g~~~~~~~~ 187 (306)
+||||++ ||..|.|+|+||+++++|.+++.||+++||++++ .++.|++|+ |.+.++..+
T Consensus 160 gVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~ 239 (353)
T cd04735 160 GVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLA 239 (353)
T ss_pred EEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHH
Confidence 9999975 7999999999999999999999999999999986 444444444 235678999
Q ss_pred HHHHHHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
+++.|+++|+|+|++++..... ....+..++.++.+++.+ ++|||++|||+|+++++++++. ++++||++++|
T Consensus 240 i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liad 319 (353)
T cd04735 240 LVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVD 319 (353)
T ss_pred HHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhC
Confidence 9999999999999998754322 122233567778888887 8999999999999999999986 56999999999
Q ss_pred CCchHHHHHHHHHhcCCC-CCcceehhhcc
Q psy4398 261 EKLPKTILYAHCKYKRFE-VPKYETVQYEK 289 (306)
Q Consensus 261 p~~~~~~l~~~~~~~g~~-~~~~~~~~~~~ 289 (306)
|++++.. .+.+..+ ..|+.+.+|..
T Consensus 320 Pdl~~k~----~~G~~~~ir~ci~~~~~~~ 345 (353)
T cd04735 320 PDWVEKI----KEGREDEINLEIDPDDLEE 345 (353)
T ss_pred ccHHHHH----HcCChhhhhhcCCHHHHHh
Confidence 9888653 2222233 57888877653
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=269.80 Aligned_cols=244 Identities=19% Similarity=0.237 Sum_probs=195.8
Q ss_pred ccccccccccCCceEEccCCC--------CCCHHHHHHHH--HcCCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR--------MNTLPFRLLAL--DYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~--------~t~~~~r~~~~--~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
.|+++++++|+|||++|||+. +|+...+.+.+ ++|+|+++||.+.+.+.....+...++++ ...+..
T Consensus 2 ~p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~-~~~~~~-- 78 (327)
T cd02803 2 SPIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYD-DEQIPG-- 78 (327)
T ss_pred CCcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCC-HHHHHH--
Confidence 478999999999999999983 23344444432 56899999999987765433222223322 223322
Q ss_pred CceeeecCCCCCCceEEEecCCC--------------------------------------HHHHHHHHHHHhc-CCCEE
Q psy4398 90 GSVVFRTCPREKNKIILQIGTAD--------------------------------------PERALEAAKKVEH-DVAAI 130 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~~--------------------------------------~~~~~~aa~~~~~-g~d~v 130 (306)
++.+.+.+|+.+.++++||++.+ .++|+++|+++++ |||+|
T Consensus 79 ~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgv 158 (327)
T cd02803 79 LRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGV 158 (327)
T ss_pred HHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 66778888888999999996421 2679999998875 99999
Q ss_pred EEccC---------CCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccC------CChHHHHHHHHHHH
Q psy4398 131 DINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVF------HNEADTIALCKRLE 193 (306)
Q Consensus 131 eln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g------~~~~~~~~~a~~l~ 193 (306)
|||++ ||..|.++|+||+++++|++++.|+++++|+.+ ++||.+|++.. ++.++..++++.++
T Consensus 159 eih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~ 238 (327)
T cd02803 159 EIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALE 238 (327)
T ss_pred EEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHH
Confidence 99988 788899999999999999999999999999998 68999999952 46788999999999
Q ss_pred HcCCcEEEEcccCCCCCCC--------CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCC
Q psy4398 194 ACGIIAIGVHGRTKAERPR--------HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVE 261 (306)
Q Consensus 194 ~~G~d~i~v~~~~~~~~~~--------~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p 261 (306)
+.|+|+|+++++....... .+.++++++++++.+++||+++|||.+.++++++++. ++++||+++.||
T Consensus 239 ~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP 318 (327)
T cd02803 239 EAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADP 318 (327)
T ss_pred HcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCc
Confidence 9999999999876543221 2457889999999999999999999999999999987 359999999999
Q ss_pred CchHH
Q psy4398 262 KLPKT 266 (306)
Q Consensus 262 ~~~~~ 266 (306)
++++.
T Consensus 319 ~l~~k 323 (327)
T cd02803 319 DLPNK 323 (327)
T ss_pred cHHHH
Confidence 88765
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=270.08 Aligned_cols=265 Identities=15% Similarity=0.101 Sum_probs=198.4
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|+++++++|||||++|||.. .|+...+.+. +++|+|+++||.+.+.+.........+ +.+..++.. +
T Consensus 3 ~P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~-~~~~~~i~~--~ 79 (353)
T cd02930 3 SPLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPV-LNSPRQAAG--H 79 (353)
T ss_pred CCeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcc-cCCHHHHHH--H
Confidence 478999999999999999972 2333344433 257899999998877654222221112 223333322 5
Q ss_pred ceeeecCCCCCCceEEEecCCC----------------------------------HHHHHHHHHHHhc-CCCEEEEccC
Q psy4398 91 SVVFRTCPREKNKIILQIGTAD----------------------------------PERALEAAKKVEH-DVAAIDINMG 135 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~~----------------------------------~~~~~~aa~~~~~-g~d~veln~g 135 (306)
+.+.+.+|+.|.++++||++.+ .++|+++|+++++ |||+||||.+
T Consensus 80 ~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~a 159 (353)
T cd02930 80 RLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGS 159 (353)
T ss_pred HHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 6678888889999999996421 2679999999874 9999999875
Q ss_pred ---------CCccccccCCccccccCChHHHHHHHHHHHhccccc--EEEEecc------CCChHHHHHHHHHHHHcCCc
Q psy4398 136 ---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP--VSCKIRV------FHNEADTIALCKRLEACGII 198 (306)
Q Consensus 136 ---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p--v~vKir~------g~~~~~~~~~a~~l~~~G~d 198 (306)
||..|.|+|+||+++++|++++.++++++|+.++.+ |.+|++. |++.+++.++++.|+++|+|
T Consensus 160 hGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d 239 (353)
T cd02930 160 EGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGAD 239 (353)
T ss_pred cchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999999999999999654 5555553 24677899999999999999
Q ss_pred EEEEcccCCCC------CCCCC-CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCCCchHHH
Q psy4398 199 AIGVHGRTKAE------RPRHR-NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVEKLPKTI 267 (306)
Q Consensus 199 ~i~v~~~~~~~------~~~~p-~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p~~~~~~ 267 (306)
+|+++....+. .+.++ ..++.++++++.+++||+++|++.++++++++++. ++++||++++||+++++.
T Consensus 240 ~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~ 319 (353)
T cd02930 240 ILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKA 319 (353)
T ss_pred EEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHH
Confidence 99996432111 11111 23566789999999999999999999999999986 569999999999888764
Q ss_pred HHHHHHhcCCC-CCcceehh--hccce
Q psy4398 268 LYAHCKYKRFE-VPKYETVQ--YEKLF 291 (306)
Q Consensus 268 l~~~~~~~g~~-~~~~~~~~--~~~~~ 291 (306)
.+. +.-+ ..|+.|++ +.+.+
T Consensus 320 ~~g----~~~~i~~Ci~cn~~C~~~~~ 342 (353)
T cd02930 320 AAG----RADEINTCIACNQACLDHIF 342 (353)
T ss_pred HhC----CcccCcCchhhHHHHHHHhc
Confidence 333 2222 57999987 55544
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=266.84 Aligned_cols=256 Identities=15% Similarity=0.122 Sum_probs=196.8
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechh-hh-h-hhh---hhhccc-----ccccccCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHK-LV-K-TER---KVNDLL-----NTIDFVDPL 88 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~-~~-~-~~~---~~~~~l-----~~~~~~~~~ 88 (306)
|++++.|++|+|||++|+.+..++..+...+...|+|.++|++++.++ .. . ..+ ...+++ +.+++.|++
T Consensus 11 Lst~~~Gl~l~NP~i~ASgp~t~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl~N~~ 90 (385)
T PLN02495 11 LSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQNIE 90 (385)
T ss_pred ceEEECCEEcCCCcEeCCccCCCCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCcccccccccccccccCcc
Confidence 789999999999999999997666666444446799999999998654 21 1 112 123444 567777773
Q ss_pred ------CCceee--ecC-CCC-CCceEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHH
Q psy4398 89 ------DGSVVF--RTC-PRE-KNKIILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDI 156 (306)
Q Consensus 89 ------~~~~~~--~~~-~~~-~~p~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~ 156 (306)
....+. ... ++. +.|+|+||.+ .++++|.+.++++++ |+|+||||++|||....+ +.|..+.++++.
T Consensus 91 ~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r-~~g~~~gq~~e~ 169 (385)
T PLN02495 91 LISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPER-KMGAAVGQDCDL 169 (385)
T ss_pred cccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcC-ccchhhccCHHH
Confidence 211111 112 223 4699999966 899999999999986 899999999999964333 357889999999
Q ss_pred HHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC---------------------CCCCCC--
Q psy4398 157 ACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK---------------------AERPRH-- 213 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------------------~~~~~~-- 213 (306)
+.++++++++.+.+||+||++ ++.++..++++.++++|+|+|++..+.. .+.+++
T Consensus 170 ~~~i~~~Vk~~~~iPv~vKLs--Pn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~a 247 (385)
T PLN02495 170 LEEVCGWINAKATVPVWAKMT--PNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKA 247 (385)
T ss_pred HHHHHHHHHHhhcCceEEEeC--CChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchh
Confidence 999999999999999999999 7888899999999999999999754321 011232
Q ss_pred --CCcHHHHHHHHhhC------CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC-C-CchHH--HHHHHHHhcCCC
Q psy4398 214 --RNRIEMIRTLTQHL------KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV-E-KLPKT--ILYAHCKYKRFE 278 (306)
Q Consensus 214 --p~~~~~v~~i~~~~------~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~-p-~~~~~--~l~~~~~~~g~~ 278 (306)
|..+..++++++.+ ++|||++|||.|.+|+.+.+.+|+ |++++++.+ | ...++ +|++||+++||+
T Consensus 248 lkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~~~G~~ 327 (385)
T PLN02495 248 VRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMKKHNFS 327 (385)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHHHcCCC
Confidence 23566677787776 499999999999999999998864 999998765 8 44444 999999999943
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=264.88 Aligned_cols=251 Identities=14% Similarity=0.107 Sum_probs=195.9
Q ss_pred ccccccccccCCceEEccCCCCCCHH-HHHHHHHcCCCEEEecceechhhhh--------------hhhhhhcccccccc
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLP-FRLLALDYGADLVYSEELVDHKLVK--------------TERKVNDLLNTIDF 84 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~-~r~~~~~~G~g~~~te~~~~~~~~~--------------~~~~~~~~l~~~~~ 84 (306)
|+++++|++|+|||++|+.+-..+.. ++. +...|+|.++|++++.++... ......+++|++++
T Consensus 3 l~~~~~Gl~l~nPv~~asg~~~~~~~~~~~-~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~gl 81 (334)
T PRK07565 3 LSTTYLGLTLRNPLVASASPLSESVDNVKR-LEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYFPEPAK 81 (334)
T ss_pred ceEEECCEecCCCCEecCcCCCCCHHHHHH-HHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhhhhhhc
Confidence 67899999999999999999644444 454 558999999999998654421 01122367889999
Q ss_pred cCCCCCceeee--cC-CCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHH
Q psy4398 85 VDPLDGSVVFR--TC-PREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNI 160 (306)
Q Consensus 85 ~~~~~~~~~~~--~~-~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~ei 160 (306)
.|+|...++.. .. .+.+.|+++||++.++++|.++++.+++ |+|+||||++||+.. .+..|.. .++.+.++
T Consensus 82 ~n~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~--~~~~g~~---~~~~~~ei 156 (334)
T PRK07565 82 FYVGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTD--PDISGAE---VEQRYLDI 156 (334)
T ss_pred cCcCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC--CCCcccc---HHHHHHHH
Confidence 99876433221 12 2335799999999999999999998875 999999999997753 2333432 34567899
Q ss_pred HHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------CCCCCC----CcHHHHHHH
Q psy4398 161 LTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------ERPRHR----NRIEMIRTL 223 (306)
Q Consensus 161 v~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~~~~~p----~~~~~v~~i 223 (306)
++++++.+++||+||++ ++.++..++++.++++|+|+|+++++... ..++++ ..+++++++
T Consensus 157 l~~v~~~~~iPV~vKl~--p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~ 234 (334)
T PRK07565 157 LRAVKSAVSIPVAVKLS--PYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAIL 234 (334)
T ss_pred HHHHHhccCCcEEEEeC--CCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHH
Confidence 99999999999999999 55567899999999999999999887521 112332 357889999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CC-CchHH--HHHHHHHhcCCC
Q psy4398 224 TQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VE-KLPKT--ILYAHCKYKRFE 278 (306)
Q Consensus 224 ~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p-~~~~~--~l~~~~~~~g~~ 278 (306)
++.+++|||++|||.|.+|+.+.+..| ||+||+++. +| ...++ +|++||+++||+
T Consensus 235 ~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~~g~~ 296 (334)
T PRK07565 235 SGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGLEDWMERHGYE 296 (334)
T ss_pred HhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999875 499999987 68 44444 999999999954
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=266.84 Aligned_cols=247 Identities=13% Similarity=0.111 Sum_probs=191.4
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHH--HHcCCCEEEecceechhhhhhh-hhhhcccccccccCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLA--LDYGADLVYSEELVDHKLVKTE-RKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 89 (306)
.|++++++++||||+++||.. +|+..+..+. +++|+|+++||.+.+.+..... ....+ +.+.+++..
T Consensus 3 ~Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~-~~~d~~i~~-- 79 (361)
T cd04747 3 TPFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPR-FHGEDALAG-- 79 (361)
T ss_pred CCeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCc-cCCHHHHHH--
Confidence 478999999999999999972 2444444442 2578999999988775321111 11112 222223322
Q ss_pred CceeeecCCCCCCceEEEecCCC----------------------------------------HHHHHHHHHHHhc-CCC
Q psy4398 90 GSVVFRTCPREKNKIILQIGTAD----------------------------------------PERALEAAKKVEH-DVA 128 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~~----------------------------------------~~~~~~aa~~~~~-g~d 128 (306)
++.+.+.+|+.|.++++||++.+ .++|+++|+++++ |||
T Consensus 80 ~~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfD 159 (361)
T cd04747 80 WKKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFD 159 (361)
T ss_pred HHHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 56678888888999999995411 1479999999975 999
Q ss_pred EEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc----------CCChHHHHH
Q psy4398 129 AIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV----------FHNEADTIA 187 (306)
Q Consensus 129 ~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~----------g~~~~~~~~ 187 (306)
+||||++| |..|.|+|+||+++++|.+++.||+++||++++ +||.+|++. |.+.+++.+
T Consensus 160 gVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~ 239 (361)
T cd04747 160 GIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEA 239 (361)
T ss_pred EEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHH
Confidence 99999998 999999999999999999999999999999984 799999994 245677899
Q ss_pred HHHHHHHcCCcEEEEcccCC-CCCCCCCCcHHHHHHHHhhCCCcEEEecCC------------------CCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTK-AERPRHRNRIEMIRTLTQHLKIPVIANGGS------------------KEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~-~~~~~~p~~~~~v~~i~~~~~ipvia~GGI------------------~s~~~~~~~l~ 248 (306)
+++.+++.|+|+|+++.... ...+.+ .++++..++++.+++||+++|+| +|+++++++++
T Consensus 240 ~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 318 (361)
T cd04747 240 LLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLE 318 (361)
T ss_pred HHHHHHHcCCCEEEecCCCccCCCcCc-cchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHH
Confidence 99999999999999976531 222322 36778889999999999999999 59999999998
Q ss_pred h----hhhhccccCCCCCchHHHHHH
Q psy4398 249 L----NCAFLRNHYPVEKLPKTILYA 270 (306)
Q Consensus 249 ~----~v~vGrall~~p~~~~~~l~~ 270 (306)
. ++++||++++||+++++..+.
T Consensus 319 ~g~~D~V~~gR~~iadP~~~~k~~~g 344 (361)
T cd04747 319 RGEFDLVAVGRALLSDPAWVAKVREG 344 (361)
T ss_pred CCCCCeehhhHHHHhCcHHHHHHHcC
Confidence 6 569999999999888764433
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=259.11 Aligned_cols=261 Identities=13% Similarity=0.102 Sum_probs=198.9
Q ss_pred ccccccccccCCceEEccCCCC-CCHHHHHHHHHcCCCEEEecceechhhhhh-----hhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRM-NTLPFRLLALDYGADLVYSEELVDHKLVKT-----ERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~-t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
|+++++|++|+|||++|+++.. +...++. ....|+|.++|++++.++.... .+...+++|++++.|+|....+
T Consensus 2 L~~~~~Gl~l~NPv~~AsG~~~~~~e~~~~-~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~ 80 (310)
T PRK02506 2 TSTQIAGFKFDNCLMNAAGVYCMTKEELEE-VEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYL 80 (310)
T ss_pred CceEECCEECCCCCEeCCCCCCCCHHHHHH-HHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHH
Confidence 5788999999999999999974 4445665 4489999999999998764311 1123568899999998764332
Q ss_pred eec--CCC--CCCceEEEecCCCHHHHHHHHHHHhc-C-CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 94 FRT--CPR--EKNKIILQIGTADPERALEAAKKVEH-D-VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 94 ~~~--~~~--~~~p~ivql~g~~~~~~~~aa~~~~~-g-~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
.+. ..+ .+.|+|+||.|.++++|.+.++.+++ | +|+||||++|||.. .+..+..+++.+.++++++++.
T Consensus 81 ~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~-----~~~~~g~d~~~~~~i~~~v~~~ 155 (310)
T PRK02506 81 DYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP-----GKPQIAYDFETTEQILEEVFTY 155 (310)
T ss_pred HHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-----CccccccCHHHHHHHHHHHHHh
Confidence 221 112 25799999999999999999999875 6 99999999999941 1445667899999999999999
Q ss_pred ccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEccc-------------CC------CCCCCC----CCcHHHHHHHH
Q psy4398 168 LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR-------------TK------AERPRH----RNRIEMIRTLT 224 (306)
Q Consensus 168 ~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~-------------~~------~~~~~~----p~~~~~v~~i~ 224 (306)
+.+||+||++...+..+..+.+..+.+.|+++|+...+ .. .+++++ |..++++++++
T Consensus 156 ~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~ 235 (310)
T PRK02506 156 FTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFY 235 (310)
T ss_pred cCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHH
Confidence 99999999995444444445555555667777654321 00 122233 34688999999
Q ss_pred hhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CC-CchHH--HHHHHHHhcCCCCCcceehhhccceeeEE
Q psy4398 225 QHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VE-KLPKT--ILYAHCKYKRFEVPKYETVQYEKLFRSLV 295 (306)
Q Consensus 225 ~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p-~~~~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 295 (306)
+.+ ++|||++|||.|.+|+.+.+.+| ||++++++. +| ...++ +|++||+++| |++++
T Consensus 236 ~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g--------------~~si~ 301 (310)
T PRK02506 236 QRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIMAEKG--------------YQSLE 301 (310)
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHHHHhC--------------CCCHH
Confidence 998 69999999999999999999875 499999876 89 55555 9999999999 77887
Q ss_pred EEcCc
Q psy4398 296 TVNGK 300 (306)
Q Consensus 296 ~~~~~ 300 (306)
+++|+
T Consensus 302 e~~G~ 306 (310)
T PRK02506 302 DFRGK 306 (310)
T ss_pred HHhCh
Confidence 77774
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=264.52 Aligned_cols=266 Identities=12% Similarity=0.024 Sum_probs=196.4
Q ss_pred ccccccccccCCceEEccCCCC----CCHHHHH-H--HHHcCCCEEEecceechhhhhhhhh-hhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVRM----NTLPFRL-L--ALDYGADLVYSEELVDHKLVKTERK-VNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~----t~~~~r~-~--~~~~G~g~~~te~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 91 (306)
.|+++++++|||||++|||+.. ++..+.. + .+++|+|+++||.+.+.+....... ..+++ +...+.. ++
T Consensus 10 ~P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~-~d~~i~~--~~ 86 (370)
T cd02929 10 EPIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLW-DDGDIRN--LA 86 (370)
T ss_pred CCccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcC-CHHHHHH--HH
Confidence 6889999999999999999732 2222222 2 2357899999998887654322211 12222 2223322 56
Q ss_pred eeeecCCCCCCceEEEecCCC-----------------------------------------HHHHHHHHHHHhc-CCCE
Q psy4398 92 VVFRTCPREKNKIILQIGTAD-----------------------------------------PERALEAAKKVEH-DVAA 129 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~-----------------------------------------~~~~~~aa~~~~~-g~d~ 129 (306)
.+.+.+|++|.++++||++.+ .++|++||+++++ |||+
T Consensus 87 ~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~aGfDg 166 (370)
T cd02929 87 AMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRARDAGFDI 166 (370)
T ss_pred HHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 677888888999999985310 2579999999975 9999
Q ss_pred EEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhccccc--EEEEecc--------CCChHHHHHHHH
Q psy4398 130 IDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP--VSCKIRV--------FHNEADTIALCK 190 (306)
Q Consensus 130 veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p--v~vKir~--------g~~~~~~~~~a~ 190 (306)
||||++| |..|.|+|+||+++++|.+++.|++++||++++.+ |.+|++. +++.+++.++++
T Consensus 167 VEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~ 246 (370)
T cd02929 167 VYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVE 246 (370)
T ss_pred EEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHH
Confidence 9999998 99999999999999999999999999999999654 5555543 134677889999
Q ss_pred HHHHcCCcEEEEcccCCCC-----C-CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCC
Q psy4398 191 RLEACGIIAIGVHGRTKAE-----R-PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPV 260 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~~~~-----~-~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~ 260 (306)
.+++. +|++.++...... . +.....+++++++++.+++|||++|+|+++++++++++. ++++||++++|
T Consensus 247 ~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~lad 325 (370)
T cd02929 247 MLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIAD 325 (370)
T ss_pred HHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhC
Confidence 99876 8999987643211 1 112235788899999999999999999999999999986 56999999999
Q ss_pred CCchHHHHHHHHHhcCCCCCcceehh-hcccee
Q psy4398 261 EKLPKTILYAHCKYKRFEVPKYETVQ-YEKLFR 292 (306)
Q Consensus 261 p~~~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~ 292 (306)
|+++++..+.-.+ --.+|+.|++ +.+.++
T Consensus 326 P~l~~k~~~g~~~---~i~~Ci~Cn~C~~~~~~ 355 (370)
T cd02929 326 PFLPKKIREGRID---DIRECIGCNICISGDEG 355 (370)
T ss_pred chHHHHHHcCCcc---ccccCCchhhhhccccC
Confidence 9888763222111 1257999998 666543
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=262.45 Aligned_cols=244 Identities=17% Similarity=0.165 Sum_probs=191.2
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|+++++++|||||++|||+. +|+..+..+. +++|+|+++||.+.+.+.....+...++ .+..++.. +
T Consensus 3 ~P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~-~~d~~~~~--~ 79 (336)
T cd02932 3 TPLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGL-WNDEQIEA--L 79 (336)
T ss_pred CCeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceee-cCHHHHHH--H
Confidence 578999999999999999973 2333344332 3578999999998876543222221122 22222222 5
Q ss_pred ceeeecCCCCCCceEEEecCC---------------------------------------------------CHHHHHHH
Q psy4398 91 SVVFRTCPREKNKIILQIGTA---------------------------------------------------DPERALEA 119 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~---------------------------------------------------~~~~~~~a 119 (306)
+.+.+.+|+.|.++++||++. -.++|+++
T Consensus 80 ~~l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~a 159 (336)
T cd02932 80 KRIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAA 159 (336)
T ss_pred HHHHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 667778888888999998431 02579999
Q ss_pred HHHHhc-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc------CCC
Q psy4398 120 AKKVEH-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV------FHN 181 (306)
Q Consensus 120 a~~~~~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~------g~~ 181 (306)
|+++++ |||+||||++| |..|.++|+||+++++|++++.|+++++|+.+ ++||.+|++. |++
T Consensus 160 A~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~ 239 (336)
T cd02932 160 ARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWD 239 (336)
T ss_pred HHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCC
Confidence 998875 99999999886 88899999999999999999999999999999 6899999993 567
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCC--CCCC-C-CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhh
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTK--AERP-R-HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAF 253 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~--~~~~-~-~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~v 253 (306)
.+++.++++.+++.|+|+|+++.... ...+ . ...+++.++++++.+++||+++|+|.++++++++++. ++++
T Consensus 240 ~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 240 LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 88899999999999999999985432 2111 1 2345788899999999999999999999999999986 4599
Q ss_pred ccccCCCCCchHH
Q psy4398 254 LRNHYPVEKLPKT 266 (306)
Q Consensus 254 Grall~~p~~~~~ 266 (306)
||++++||.++.+
T Consensus 320 gR~~i~dP~~~~k 332 (336)
T cd02932 320 GRELLRNPYWPLH 332 (336)
T ss_pred hHHHHhCccHHHH
Confidence 9999999988765
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=260.56 Aligned_cols=240 Identities=18% Similarity=0.186 Sum_probs=188.0
Q ss_pred ccccccccccCCceEEccCCC--------CCCHHHHHHHHH-cCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR--------MNTLPFRLLALD-YGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~--------~t~~~~r~~~~~-~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|++|++++|||||++|||.. +|+...+.+.++ .| |+++||.+.+.+.....+...+ +.+...+.. +
T Consensus 4 ~P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~-l~~d~~i~~--l 79 (338)
T cd02933 4 SPLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPG-IYTDEQVEG--W 79 (338)
T ss_pred CCceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCc-cCCHHHHHH--H
Confidence 578999999999999999972 133344444333 35 9999999887654322111111 222222221 5
Q ss_pred ceeeecCCCCCCceEEEecCC----------------------------------C---------------HHHHHHHHH
Q psy4398 91 SVVFRTCPREKNKIILQIGTA----------------------------------D---------------PERALEAAK 121 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~----------------------------------~---------------~~~~~~aa~ 121 (306)
+.+.+.+|+++.++++||.+. . .++|+++|+
T Consensus 80 r~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 159 (338)
T cd02933 80 KKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAAR 159 (338)
T ss_pred HHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 667778888899999998541 0 256999999
Q ss_pred HHhc-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhcccc-cEEEEeccC---------CC
Q psy4398 122 KVEH-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLSI-PVSCKIRVF---------HN 181 (306)
Q Consensus 122 ~~~~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~g---------~~ 181 (306)
++++ |||+||||++| |..|.|+|+||+++++|.+++.|++++||++++. +|.+|++.. .+
T Consensus 160 ~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~ 239 (338)
T cd02933 160 NAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDP 239 (338)
T ss_pred HHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCC
Confidence 9975 99999999998 9999999999999999999999999999999865 899999852 25
Q ss_pred hHHHHHHHHHHHHcCCcEEEEc-ccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccc
Q psy4398 182 EADTIALCKRLEACGIIAIGVH-GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRN 256 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~-~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGra 256 (306)
.++..++++.|++.|+|+|+++ ++..... ...++++++++++.+++|||++|||+ +++++++++. +|++||+
T Consensus 240 ~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~--~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~ 316 (338)
T cd02933 240 EATFSYLAKELNKRGLAYLHLVEPRVAGNP--EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRP 316 (338)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCCCcc--cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHh
Confidence 6788999999999999999995 4333222 45688999999999999999999997 9999999986 5699999
Q ss_pred cCCCCCchHH
Q psy4398 257 HYPVEKLPKT 266 (306)
Q Consensus 257 ll~~p~~~~~ 266 (306)
+++||+|+++
T Consensus 317 ~ladP~~~~k 326 (338)
T cd02933 317 FIANPDLVER 326 (338)
T ss_pred hhhCcCHHHH
Confidence 9999988876
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=254.17 Aligned_cols=240 Identities=18% Similarity=0.210 Sum_probs=192.5
Q ss_pred ccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhh--h---h---------hhcccccccccCC
Q psy4398 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE--R---K---------VNDLLNTIDFVDP 87 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~--~---~---------~~~~l~~~~~~~~ 87 (306)
+++.|++|+|||++|++....+..+.......|+|+++|++++.++..... + . ..+++|++++.+.
T Consensus 1 ~~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~ 80 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNL 80 (289)
T ss_pred CeECCEECCCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCc
Confidence 357899999999999999866766666555899999999999977543211 1 1 2467788888777
Q ss_pred CCCceee---ecCCC-CCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHH
Q psy4398 88 LDGSVVF---RTCPR-EKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILT 162 (306)
Q Consensus 88 ~~~~~~~---~~~~~-~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~ 162 (306)
+...... ...+. .+.|+++||.+.++++|.++++.+++ |+|+||||++||+.+. +..++++++.+.++++
T Consensus 81 g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~ 155 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLK 155 (289)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHH
Confidence 5432211 12222 46899999999999999999999876 8999999999999543 3447889999999999
Q ss_pred HHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC----------------CCCCC----CCcHHHHHH
Q psy4398 163 TLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA----------------ERPRH----RNRIEMIRT 222 (306)
Q Consensus 163 ~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~----------------~~~~~----p~~~~~v~~ 222 (306)
++++.+++||++|++.+.+.++..++++.++++|+|+|+++++... +.+++ +..++++++
T Consensus 156 ~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~ 235 (289)
T cd02810 156 AVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVAR 235 (289)
T ss_pred HHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHH
Confidence 9999999999999998777778999999999999999999876421 11122 235889999
Q ss_pred HHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCC-CCchHH
Q psy4398 223 LTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPV-EKLPKT 266 (306)
Q Consensus 223 i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~-p~~~~~ 266 (306)
+++.+ ++|||++|||.|.+++.++++.| +++||+++.| |.+.+.
T Consensus 236 i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~ 285 (289)
T cd02810 236 LAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRK 285 (289)
T ss_pred HHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHH
Confidence 99999 89999999999999999999875 5999999998 966554
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=251.19 Aligned_cols=244 Identities=15% Similarity=0.067 Sum_probs=190.0
Q ss_pred ccccccccCCceEEccCC-CCCCHHHHHHHHHcCCCEEEecceechhhhhh-----hhhhhcccccccccCCCCCceeee
Q psy4398 22 ANQANINYSNKIILAPMV-RMNTLPFRLLALDYGADLVYSEELVDHKLVKT-----ERKVNDLLNTIDFVDPLDGSVVFR 95 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~-~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~ 95 (306)
+++.|++|+|||++|+++ +.+...++.+. ..|+|.++|++++.++.... .+...+++|++++.|+|....+.+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~~~~e~~~~~~-~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~ 79 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWCTTLEDLLELA-ASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEY 79 (294)
T ss_pred CccCCeeCCCCCEECCCCCCCCHHHHHHHH-HcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHH
Confidence 357899999999999999 45555566655 58999999999998765321 122456789999999876443222
Q ss_pred c--C----CCCCCceEEEecCCCHHHHHHHHHHHhc----CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH
Q psy4398 96 T--C----PREKNKIILQIGTADPERALEAAKKVEH----DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI 165 (306)
Q Consensus 96 ~--~----~~~~~p~ivql~g~~~~~~~~aa~~~~~----g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~ 165 (306)
. . ++.+.|+++||+|. +++|.++++.+++ ++|+||||++||+.. + +..+..+++.+.+++++++
T Consensus 80 i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~----~-~~~~~~~~~~~~~i~~~v~ 153 (294)
T cd04741 80 IRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP----G-KPPPAYDFDATLEYLTAVK 153 (294)
T ss_pred HHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC----C-cccccCCHHHHHHHHHHHH
Confidence 1 1 12467999999999 9999999998864 699999999999941 1 2356679999999999999
Q ss_pred hcccccEEEEeccCCChHHHHHHHHHHHHc--CCcEEEEcccC-----------C-----C---CCCCC----CCcHHHH
Q psy4398 166 SNLSIPVSCKIRVFHNEADTIALCKRLEAC--GIIAIGVHGRT-----------K-----A---ERPRH----RNRIEMI 220 (306)
Q Consensus 166 ~~~~~pv~vKir~g~~~~~~~~~a~~l~~~--G~d~i~v~~~~-----------~-----~---~~~~~----p~~~~~v 220 (306)
+.+.+||+||++.+++.++..++|+.+.+. |+|+|+++.+. . . +.+++ |..++++
T Consensus 154 ~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v 233 (294)
T cd04741 154 AAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNV 233 (294)
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHH
Confidence 999999999999877777888999999998 99999953221 1 1 12232 2357888
Q ss_pred HHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccC-CCC-CchHH--HHHHHH
Q psy4398 221 RTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHY-PVE-KLPKT--ILYAHC 272 (306)
Q Consensus 221 ~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall-~~p-~~~~~--~l~~~~ 272 (306)
+++++.+ ++|||++|||.|.+|+.+.+.+| ||+||+++ .|| .+.++ +|++|+
T Consensus 234 ~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~~ 294 (294)
T cd04741 234 RTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKELEDIW 294 (294)
T ss_pred HHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHHHHHhhC
Confidence 9999999 49999999999999999999875 49999998 599 44444 888875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=283.10 Aligned_cols=264 Identities=14% Similarity=0.153 Sum_probs=204.9
Q ss_pred ccccccccccCCceEEccCCCC-------CCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM-------NTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~-------t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|++|++++|||||+++||+.+ |+.+...+. +++|+|+++||.+.+.+.....+...++++ .+.+.. +
T Consensus 401 ~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~-d~~i~~--~ 477 (765)
T PRK08255 401 TPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYN-DEQEAA--W 477 (765)
T ss_pred CccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCC-HHHHHH--H
Confidence 7899999999999999999742 334444432 257899999999887654332222223322 223332 5
Q ss_pred ceeeecCCCC-CCceEEEecCC-------------------------------------C------------HHHHHHHH
Q psy4398 91 SVVFRTCPRE-KNKIILQIGTA-------------------------------------D------------PERALEAA 120 (306)
Q Consensus 91 ~~~~~~~~~~-~~p~ivql~g~-------------------------------------~------------~~~~~~aa 120 (306)
+.+.+.+|++ +.++++||++. . .++|+++|
T Consensus 478 ~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA 557 (765)
T PRK08255 478 KRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAA 557 (765)
T ss_pred HHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 6677888877 58899998430 0 25799999
Q ss_pred HHHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc------CCCh
Q psy4398 121 KKVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV------FHNE 182 (306)
Q Consensus 121 ~~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~------g~~~ 182 (306)
+++++ |||+||||++ ||..|.++|+||+++++|.+++.||+++||+.+ ++||.+|++. |++.
T Consensus 558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~ 637 (765)
T PRK08255 558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTP 637 (765)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCH
Confidence 98875 9999999999 999999999999999999999999999999998 4799999996 4567
Q ss_pred HHHHHHHHHHHHcCCcEEEEccc-CCCCC---CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhc
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGR-TKAER---PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFL 254 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~-~~~~~---~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vG 254 (306)
+++.++++.|+++|+|+|+||.. ..... +......++.+++++.+++|||++|+|+++++++++++. ++++|
T Consensus 638 ~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~g 717 (765)
T PRK08255 638 DDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALA 717 (765)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEc
Confidence 88999999999999999999853 32111 111234677899999999999999999999999999986 56999
Q ss_pred cccCCCCCchHHHHHHHHHh-cCCCCCcceehh
Q psy4398 255 RNHYPVEKLPKTILYAHCKY-KRFEVPKYETVQ 286 (306)
Q Consensus 255 rall~~p~~~~~~l~~~~~~-~g~~~~~~~~~~ 286 (306)
|++++||.|+.....++-.+ ..++.-|..||+
T Consensus 718 R~~l~dP~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (765)
T PRK08255 718 RPHLADPAWTLHEAAEIGYRDVAWPKQYLAGKR 750 (765)
T ss_pred HHHHhCccHHHHHHHHcCCCCCCCchhhhhhhc
Confidence 99999998887766665443 445566777877
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=265.67 Aligned_cols=247 Identities=18% Similarity=0.196 Sum_probs=180.3
Q ss_pred ccccccccccCCceEEccCCCC--------CC-HHHHHH--HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM--------NT-LPFRLL--ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--------t~-~~~r~~--~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (306)
.|++|++++|||||++|||+.. ++ .....+ .+++|+|+++||.+.+.+.........++ .+..++..
T Consensus 4 ~P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i-~~d~~i~~- 81 (341)
T PF00724_consen 4 SPLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGI-WDDEQIPG- 81 (341)
T ss_dssp S-EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBS-SSHHHHHH-
T ss_pred CCeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchh-chhhHHHH-
Confidence 5779999999999999999832 22 222222 23789999999999887654432222222 23333332
Q ss_pred CCceeeecCCCCCCceEEEecCCC-------------------------------------------HHHHHHHHHHHhc
Q psy4398 89 DGSVVFRTCPREKNKIILQIGTAD-------------------------------------------PERALEAAKKVEH 125 (306)
Q Consensus 89 ~~~~~~~~~~~~~~p~ivql~g~~-------------------------------------------~~~~~~aa~~~~~ 125 (306)
++.+.+.+|++|.++++||++.+ .++|++||+++++
T Consensus 82 -~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~ 160 (341)
T PF00724_consen 82 -LKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKE 160 (341)
T ss_dssp -HHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 66788888889999999996421 2579999999975
Q ss_pred -CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc------CCChHHHHH
Q psy4398 126 -DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV------FHNEADTIA 187 (306)
Q Consensus 126 -g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~------g~~~~~~~~ 187 (306)
|||+||||.+ +|..|.|+|+||++++||.+++.||+++||+.+ +.||.+|++. |.+.++..+
T Consensus 161 AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~ 240 (341)
T PF00724_consen 161 AGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIE 240 (341)
T ss_dssp TT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHH
T ss_pred hccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHH
Confidence 9999999976 799999999999999999999999999999998 5788999997 223467888
Q ss_pred HHHHHHHcCCcEEEEcccC------C--CC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhh
Q psy4398 188 LCKRLEACGIIAIGVHGRT------K--AE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAF 253 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~------~--~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~v 253 (306)
+++.+++.|+|.+.++... . .. .......++.+..+++.+++|||++|||++++.++++++. ++.+
T Consensus 241 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 241 IAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAM 320 (341)
T ss_dssp HHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeec
Confidence 9999999999988754211 0 11 1111235678899999999999999999999999999986 4699
Q ss_pred ccccCCCCCchHHHHH
Q psy4398 254 LRNHYPVEKLPKTILY 269 (306)
Q Consensus 254 Grall~~p~~~~~~l~ 269 (306)
||++++||.|+++..+
T Consensus 321 gR~~ladPd~~~k~~~ 336 (341)
T PF00724_consen 321 GRPLLADPDLPNKARE 336 (341)
T ss_dssp SHHHHH-TTHHHHHHH
T ss_pred cHHHHhCchHHHHHHc
Confidence 9999999999987433
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=252.80 Aligned_cols=240 Identities=17% Similarity=0.152 Sum_probs=191.1
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh--hh-----hhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT--ER-----KVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~--~~-----~~~~~l~~~~~~~~~~~~~ 92 (306)
+++++.|++|+|||++|++...+...++.+. +.|+|++++++++.++.... .+ ...+++|++++.|+|....
T Consensus 39 L~~~~~Gl~l~nPi~~AsG~~~~~~~~~~~~-~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~ 117 (327)
T cd04738 39 LEVEVFGLTFPNPVGLAAGFDKNAEAIDALL-ALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAV 117 (327)
T ss_pred cceEECCEECCCCCEeCcCCCCCHHHHHHHH-HCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHH
Confidence 9999999999999999999875555566655 89999999999987643311 11 1247889999988875433
Q ss_pred eeecC--CCCCCceEEEecCCC-------HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 93 VFRTC--PREKNKIILQIGTAD-------PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 93 ~~~~~--~~~~~p~ivql~g~~-------~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
+.+.. ...+.|+++||++++ .++|+++++.+..++|+||||++||+.. |....++++.+.+++++
T Consensus 118 ~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~------g~~~~~~~~~~~~iv~a 191 (327)
T cd04738 118 AKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP------GLRDLQGKEALRELLTA 191 (327)
T ss_pred HHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------ccccccCHHHHHHHHHH
Confidence 22211 114689999999886 6888888888877899999999999942 33447899999999999
Q ss_pred HHhccc-----ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------CCCCCC----CcHHHHH
Q psy4398 164 LISNLS-----IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------ERPRHR----NRIEMIR 221 (306)
Q Consensus 164 v~~~~~-----~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~~~~~p----~~~~~v~ 221 (306)
+++.+. +||+||++.+++.++..++++.++++|+|+|++++++.. +.++++ ..+++++
T Consensus 192 v~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~ 271 (327)
T cd04738 192 VKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLR 271 (327)
T ss_pred HHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHH
Confidence 999886 999999997666668999999999999999999886531 234443 3489999
Q ss_pred HHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCchHH
Q psy4398 222 TLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLPKT 266 (306)
Q Consensus 222 ~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~~~ 266 (306)
++++.+ ++|||++|||.|.+|+.+++..| ||+||+++. ||.+.+.
T Consensus 272 ~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~ 322 (327)
T cd04738 272 ELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKR 322 (327)
T ss_pred HHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHH
Confidence 999999 79999999999999999999864 599999866 6955543
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=255.00 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=187.9
Q ss_pred ccccccccccCCceEEccCCCC---------CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM---------NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~---------t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|+++++++|||||++|||... |+...+.+.+++|+|+++||.+.+.+.....+...+++ +...+.. +
T Consensus 5 ~P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rAg~GLIi~e~~~v~~~~~~~~~~~~l~-~d~~i~~--~ 81 (362)
T PRK10605 5 SPLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEATQISAQAKGYAGAPGLH-SPEQIAA--W 81 (362)
T ss_pred CCeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHhCCCEEEECceeeCcccccCCCCCccc-CHHHHHH--H
Confidence 6789999999999999999731 23345555666799999999988765432222211222 2222222 5
Q ss_pred ceeeecCCCCCCceEEEecCCC------------------------------------------------------HHHH
Q psy4398 91 SVVFRTCPREKNKIILQIGTAD------------------------------------------------------PERA 116 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~~------------------------------------------------------~~~~ 116 (306)
+.+.+.+|++|.++++||++.+ .++|
T Consensus 82 ~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f 161 (362)
T PRK10605 82 KKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDF 161 (362)
T ss_pred HHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHH
Confidence 6677888888999999985410 1569
Q ss_pred HHHHHHHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEecc-------
Q psy4398 117 LEAAKKVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRV------- 178 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~------- 178 (306)
++||+++++ |||+||||++ +|..|.|+|+||++++||.+++.||+++||++++ ..|.+|++.
T Consensus 162 ~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~ 241 (362)
T PRK10605 162 RQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNV 241 (362)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccC
Confidence 999999975 9999999976 7999999999999999999999999999999984 258888864
Q ss_pred --CCChHH-HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hh
Q psy4398 179 --FHNEAD-TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NC 251 (306)
Q Consensus 179 --g~~~~~-~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v 251 (306)
|.+.++ ..++++.|++.|+|+|+++....... .+....+.++|++.+++||+++|++ |++.++++++. +|
T Consensus 242 ~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~--~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V 318 (362)
T PRK10605 242 DNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG--EPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAV 318 (362)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC--ccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEE
Confidence 345567 79999999999999999986422111 1334567799999999999999996 89999999986 45
Q ss_pred hhccccCCCCCchHHH
Q psy4398 252 AFLRNHYPVEKLPKTI 267 (306)
Q Consensus 252 ~vGrall~~p~~~~~~ 267 (306)
.+||++++||.|+++.
T Consensus 319 ~~gR~~iadPd~~~k~ 334 (362)
T PRK10605 319 AFGRDYIANPDLVARL 334 (362)
T ss_pred EECHHhhhCccHHHHH
Confidence 9999999999888764
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=232.66 Aligned_cols=212 Identities=17% Similarity=0.195 Sum_probs=170.0
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEecceechhhh--------hhhhhhhccccc---ccccCCCCCceeeecCCCCCCceEE
Q psy4398 38 MVRMNTLPFRLLALDYGADLVYSEELVDHKLV--------KTERKVNDLLNT---IDFVDPLDGSVVFRTCPREKNKIIL 106 (306)
Q Consensus 38 m~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~--------~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~p~iv 106 (306)
|.|.||..|..-... .+|+++-...+.+... ...|. .-+++. ..|++ + ....++ ...|+++
T Consensus 1 mag~~d~~~~~~~~~-~~~~~~lgg~~~d~~t~~a~~~~~~rgr~-ef~~~~e~~~~~i~----~-e~~~~~-~~~~viv 72 (231)
T TIGR00736 1 MAGITDAEFCRKFKD-LFAIVTLGGYNADRATYKASRDIEKRGRK-EFSFNLEEFNSYII----E-QIKKAE-SRALVSV 72 (231)
T ss_pred CCCcchHHHHHhcCc-CcCEEEECCccCCHHHHHHHHHHHHcCCc-ccCcCcccHHHHHH----H-HHHHHh-hcCCEEE
Confidence 788999998775422 4889988888755432 11111 112221 11111 1 112222 4569999
Q ss_pred EecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHH
Q psy4398 107 QIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 107 ql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~ 186 (306)
|+.+.+++++.++++.+++++|+||||+|||++++.+.++|++++++|+.+.++++++++ .++||+||+|++++..+..
T Consensus 73 nv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~ 151 (231)
T TIGR00736 73 NVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDEL 151 (231)
T ss_pred EEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHH
Confidence 999999999999999999899999999999999999999999999999999999999994 5899999999887667789
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
++++.++++|+|+|+||.+.... ++++|++++++++.++ +|||+||||.|.+|+.++++.| ||+||+++.+-
T Consensus 152 ~~a~~l~~aGad~i~Vd~~~~g~---~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~~ 227 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVDAMYPGK---PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKGN 227 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCCCCC---chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccCC
Confidence 99999999999999998654322 2268999999999995 9999999999999999999874 59999999764
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=250.61 Aligned_cols=250 Identities=16% Similarity=0.117 Sum_probs=197.2
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhh-------hhhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK-------TERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
+++++.|++|+|||.+|++.+.+...++.+. ..|+|++.++++++.+... ......+++|+++|.|+|....
T Consensus 74 L~~~~~Gl~f~NPvglAAG~dkn~~~~~~l~-~lGfG~vevgTVT~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~ 152 (409)
T PLN02826 74 LGVEVWGRTFSNPIGLAAGFDKNAEAVEGLL-GLGFGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAV 152 (409)
T ss_pred cceEECCEECCCCCEECcccCCCHHHHHHHH-hcCCCeEEeCCccCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHH
Confidence 8999999999999999999998877777766 5699999999999765431 1122367899999999975432
Q ss_pred eeec---CCC----------------------CCCceEEEecCC-----CHHHHHHHHHHHhcCCCEEEEccCCCccccc
Q psy4398 93 VFRT---CPR----------------------EKNKIILQIGTA-----DPERALEAAKKVEHDVAAIDINMGCPKQFSL 142 (306)
Q Consensus 93 ~~~~---~~~----------------------~~~p~ivql~g~-----~~~~~~~aa~~~~~g~d~veln~gcP~~~~~ 142 (306)
..+. .++ ...|+++||+++ ..++|.+.++.+...+|+||||++|||+.
T Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtp-- 230 (409)
T PLN02826 153 AKRLGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTP-- 230 (409)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccCceEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCC--
Confidence 1111 000 123899999777 57899999998888899999999999951
Q ss_pred cCCccccccCChHHHHHHHHHHHhc---------ccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC------
Q psy4398 143 TGGMGAALLSTPDIACNILTTLISN---------LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK------ 207 (306)
Q Consensus 143 ~~~~G~~l~~~~~~~~eiv~~v~~~---------~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~------ 207 (306)
|...+++++.+.++++++++. ..+||+||++...+.++..++|+.+.++|+|+|+++..+.
T Consensus 231 ----glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl 306 (409)
T PLN02826 231 ----GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSV 306 (409)
T ss_pred ----CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccch
Confidence 335567888999999988643 3689999999555556899999999999999999876431
Q ss_pred --------CCCCCCC----CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC-CC-CchHH--
Q psy4398 208 --------AERPRHR----NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP-VE-KLPKT-- 266 (306)
Q Consensus 208 --------~~~~~~p----~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~-~p-~~~~~-- 266 (306)
.++++++ ..+++++++++.+ ++|||++|||.|.+|+.+.+.+|+ |++|+++. +| ...++
T Consensus 307 ~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~ 386 (409)
T PLN02826 307 LGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKA 386 (409)
T ss_pred hcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHH
Confidence 1234443 3688999999998 799999999999999999998865 99999854 79 44444
Q ss_pred HHHHHHHhcC
Q psy4398 267 ILYAHCKYKR 276 (306)
Q Consensus 267 ~l~~~~~~~g 276 (306)
+|.+||+++|
T Consensus 387 eL~~~l~~~G 396 (409)
T PLN02826 387 ELAACLERDG 396 (409)
T ss_pred HHHHHHHHcC
Confidence 9999999999
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=238.19 Aligned_cols=243 Identities=19% Similarity=0.186 Sum_probs=191.3
Q ss_pred cccccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh--hh-----hhhcccccccccCCCC
Q psy4398 17 LDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT--ER-----KVNDLLNTIDFVDPLD 89 (306)
Q Consensus 17 ~~~~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~--~~-----~~~~~l~~~~~~~~~~ 89 (306)
.+.++++++|++|+|||++|++.+.+....+.+. ..|+|.+++++++.++.... .+ ...+++|++++.|+|.
T Consensus 43 ~~~L~~~~~Gl~l~NPi~lAsG~~~~~~~~~~~~-~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~ 121 (335)
T TIGR01036 43 SDPLEVTVLGLKFPNPLGLAAGFDKDGEAIDALG-AMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGA 121 (335)
T ss_pred CCCCcEEECCEECCCCcEeCCccCCCHHHHHHHH-hcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhH
Confidence 4448999999999999999999876666666655 67999999999997653311 11 2257889999999876
Q ss_pred CceeeecC-CCCCCceEEEecCC-------CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHH
Q psy4398 90 GSVVFRTC-PREKNKIILQIGTA-------DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL 161 (306)
Q Consensus 90 ~~~~~~~~-~~~~~p~ivql~g~-------~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv 161 (306)
...+.+.. .+.+.|++++++++ ..++|++.++.+.+.+|+||||++|||.. |....++++.+.+++
T Consensus 122 ~~~l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~------~~~~~~~~~~~~~i~ 195 (335)
T TIGR01036 122 DVLVERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP------GLRDLQYKAELRDLL 195 (335)
T ss_pred HHHHHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC------CcccccCHHHHHHHH
Confidence 54333222 23467999999766 47899999998877899999999999951 345568899999999
Q ss_pred HHHHhccc-------ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC-------------CCCCCCC----CcH
Q psy4398 162 TTLISNLS-------IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK-------------AERPRHR----NRI 217 (306)
Q Consensus 162 ~~v~~~~~-------~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~-------------~~~~~~p----~~~ 217 (306)
+++++.+. +||+||++...+.++..++++.++++|+|+|++..... .+.++++ ..+
T Consensus 196 ~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al 275 (335)
T TIGR01036 196 TAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKST 275 (335)
T ss_pred HHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHH
Confidence 99998876 99999999555555899999999999999999865432 1233443 367
Q ss_pred HHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCchHH
Q psy4398 218 EMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLPKT 266 (306)
Q Consensus 218 ~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~~~ 266 (306)
++++++++.+ ++|||++|||.+.+|+.+.+.+| ||+||+++. +|.+.+.
T Consensus 276 ~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~ 330 (335)
T TIGR01036 276 EIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKE 330 (335)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHH
Confidence 8999999988 69999999999999999999875 499999866 7966554
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=244.21 Aligned_cols=243 Identities=15% Similarity=0.114 Sum_probs=178.8
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHHH--HcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLAL--DYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~~--~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|+++++++|||||++|||+. +|+.....+.+ ++| |+++||.+.+.+.........+++ +..++.. +
T Consensus 14 ~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g~~~~~~~gi~-~d~~i~~--~ 89 (391)
T PLN02411 14 SPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTAPGFPHVPGIY-SDEQVEA--W 89 (391)
T ss_pred CCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcccCcCCCCCccC-CHHHHHH--H
Confidence 677999999999999999973 23344333332 356 999999988765432222212222 2222222 5
Q ss_pred ceeeecCCCCCCceEEEecCC----------------------------------------C------------HHHHHH
Q psy4398 91 SVVFRTCPREKNKIILQIGTA----------------------------------------D------------PERALE 118 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~----------------------------------------~------------~~~~~~ 118 (306)
+.+.+.+|++|.++++||++. . .++|++
T Consensus 90 ~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~ 169 (391)
T PLN02411 90 KKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQ 169 (391)
T ss_pred HHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHH
Confidence 667778888888888898420 0 256999
Q ss_pred HHHHHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccC--------
Q psy4398 119 AAKKVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVF-------- 179 (306)
Q Consensus 119 aa~~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g-------- 179 (306)
||+++++ |||+||||.+ +|..|.|+|+||++++||.+++.||+++||++++ ..|.+|++..
T Consensus 170 AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~ 249 (391)
T PLN02411 170 AALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATD 249 (391)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCC
Confidence 9999974 9999999976 7999999999999999999999999999999995 2488888841
Q ss_pred -CChHHHHHHHHHHHHc------CCcEEEEcccCCCCC------CCCCC--cHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q psy4398 180 -HNEADTIALCKRLEAC------GIIAIGVHGRTKAER------PRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVDYG 244 (306)
Q Consensus 180 -~~~~~~~~~a~~l~~~------G~d~i~v~~~~~~~~------~~~p~--~~~~v~~i~~~~~ipvia~GGI~s~~~~~ 244 (306)
...++..++++.+++. |+|+|+++....... ...+. ...+.+++++.+++|||++|+| +.+.++
T Consensus 250 ~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~~~a~ 328 (391)
T PLN02411 250 SDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TRELGM 328 (391)
T ss_pred CcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-CHHHHH
Confidence 1134567788888763 599999986532110 01111 2356789999999999999999 579999
Q ss_pred HHHHh----hhhhccccCCCCCchHHH
Q psy4398 245 GVFSL----NCAFLRNHYPVEKLPKTI 267 (306)
Q Consensus 245 ~~l~~----~v~vGrall~~p~~~~~~ 267 (306)
++++. +|.+||++++||+|+++.
T Consensus 329 ~~l~~g~aDlV~~gR~~iadPdl~~k~ 355 (391)
T PLN02411 329 QAVQQGDADLVSYGRLFISNPDLVLRF 355 (391)
T ss_pred HHHHcCCCCEEEECHHHHhCccHHHHH
Confidence 99986 459999999999998763
|
|
| >KOG2334|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=230.49 Aligned_cols=243 Identities=51% Similarity=0.821 Sum_probs=222.4
Q ss_pred cccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCC
Q psy4398 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKN 102 (306)
Q Consensus 23 ~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 102 (306)
++..+.+.|.+++|||...+..++|.++-++|+++++||-+....+....+..+..+++++|.+|......++.++.+..
T Consensus 3 ~~~~l~y~nk~iLApMvr~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~ 82 (477)
T KOG2334|consen 3 KISSLFYRNKLILAPMVRAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENS 82 (477)
T ss_pred chhhhhhcCcEeeehHHHhccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcC
Confidence 45667889999999999999999999999999999999999888888888877888999999999777788999988888
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
.++.|++.++++-..++|+.+.....++++|+|||..+-...+.|+.++.+++.+..|+..+.+...+|+++|+|.-++.
T Consensus 83 rlilQ~gT~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~ 162 (477)
T KOG2334|consen 83 RLILQIGTASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSK 162 (477)
T ss_pred eEEEEecCCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCCc
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHh-------hhhhc
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSL-------NCAFL 254 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~-------~v~vG 254 (306)
+++.++.+.+.+.|+.+|.+|+|+.+++...|..-++++.+.+.+. +|||+|||+.+++.+.++... ++++.
T Consensus 163 edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiA 242 (477)
T KOG2334|consen 163 EDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIA 242 (477)
T ss_pred ccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhh
Confidence 9999999999999999999999999999999999999999999996 999999999997777666543 67999
Q ss_pred cccCCCC-CchH
Q psy4398 255 RNHYPVE-KLPK 265 (306)
Q Consensus 255 rall~~p-~~~~ 265 (306)
|+..+|| .+.+
T Consensus 243 R~A~~n~SiF~~ 254 (477)
T KOG2334|consen 243 RAAESNPSIFRE 254 (477)
T ss_pred HhhhcCCceeee
Confidence 9999999 5543
|
|
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=239.73 Aligned_cols=248 Identities=20% Similarity=0.217 Sum_probs=178.9
Q ss_pred cccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh--h---hhhh--cccccccccCCCCCc
Q psy4398 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT--E---RKVN--DLLNTIDFVDPLDGS 91 (306)
Q Consensus 19 ~~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~--~---~~~~--~~l~~~~~~~~~~~~ 91 (306)
+|+++++|++|+|||++|++...+...++.+. +.|+|+++|++++.++.... . +... .++|++++.|+|...
T Consensus 1 ~L~~~~~Gl~l~nPi~~asG~~~~~~~~~~~~-~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~ 79 (295)
T PF01180_consen 1 MLSTNFCGLTLKNPIGLASGLDKNGEEIKRLF-DAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEY 79 (295)
T ss_dssp GG-EEETTEEESSSEEE-TTSSTSSHHHHHHH-HHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHH
T ss_pred CccEEECCEEcCCCcEECCcCCCCchhhhhhh-cCCccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHH
Confidence 47899999999999999999876666666655 67899999999997765311 1 1223 378888888876533
Q ss_pred eeee---cC---C-CCCCceEEEecCCC---HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHH
Q psy4398 92 VVFR---TC---P-REKNKIILQIGTAD---PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL 161 (306)
Q Consensus 92 ~~~~---~~---~-~~~~p~ivql~g~~---~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv 161 (306)
...+ .. . ....|+++++.+.+ .++|.+.++.+++|+|++|||++||+.. .+..+.++++...+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~ 154 (295)
T PF01180_consen 80 YLERLRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-----GGRPFGQDPELVAEIV 154 (295)
T ss_dssp HHHHHHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHH
T ss_pred HHHHHHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-----CccccccCHHHHHHHH
Confidence 2111 11 1 13579999999999 9999999999989999999999999953 3445677889999999
Q ss_pred HHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC-----------------CCCCCC----CCcHHHH
Q psy4398 162 TTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK-----------------AERPRH----RNRIEMI 220 (306)
Q Consensus 162 ~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~-----------------~~~~~~----p~~~~~v 220 (306)
+.+++..++||+||++...+.......+..+.+.|+++|++..+.. .+.+++ |..++++
T Consensus 155 ~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V 234 (295)
T PF01180_consen 155 RAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWV 234 (295)
T ss_dssp HHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHH
T ss_pred HHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHH
Confidence 9999988999999999533434456677777789999999543210 011233 3468999
Q ss_pred HHHHhhCC--CcEEEecCCCCHHHHHHHHHhhh---hhcccc-CCCC-CchHH--HHHHHH
Q psy4398 221 RTLTQHLK--IPVIANGGSKEIVDYGGVFSLNC---AFLRNH-YPVE-KLPKT--ILYAHC 272 (306)
Q Consensus 221 ~~i~~~~~--ipvia~GGI~s~~~~~~~l~~~v---~vGral-l~~p-~~~~~--~l~~~~ 272 (306)
+++++.++ +|||++|||.|.+|+.+.+.+|+ |+++++ +.|| ...++ +|++||
T Consensus 235 ~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~~~l 295 (295)
T PF01180_consen 235 RELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINRELEEWL 295 (295)
T ss_dssp HHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHHHHHH
T ss_pred HHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHHHhhC
Confidence 99999997 99999999999999999998865 999999 6799 44554 999997
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >KOG2333|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-29 Score=231.41 Aligned_cols=231 Identities=26% Similarity=0.398 Sum_probs=196.4
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPR 99 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 99 (306)
-|....-+.++.+++|||++.+.+.+||++|.++||+..+.||....++..+....+.+ .+.+..
T Consensus 254 ~p~eKk~lD~r~K~~LaPLTTvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWAL---------------lkRH~s 318 (614)
T KOG2333|consen 254 RPQEKKLLDFRDKKYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWAL---------------LKRHQS 318 (614)
T ss_pred ChhcccccccccceeeccccccCCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhh---------------hhhcCc
Confidence 56667778899999999999999999999999999999999998777766543332222 223333
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhc--CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEe
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKI 176 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~--g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKi 176 (306)
++ .++|||.|+.++...++|+.+.+ ..|.|+||+|||-.-+.+.+.|++|+++|..+.+++++.....+ +|++||+
T Consensus 319 Ed-iFGVQlag~~pdt~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKi 397 (614)
T KOG2333|consen 319 ED-IFGVQLAGSKPDTAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKI 397 (614)
T ss_pred cc-ceeeEeccCChHHHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEE
Confidence 34 79999999999999999997764 68999999999998888899999999999999999999988774 6999999
Q ss_pred ccCCCh--HHHHHHHHHHH-HcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-C-CcEEEecCCCCHHHHHHHHHh--
Q psy4398 177 RVFHNE--ADTIALCKRLE-ACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-K-IPVIANGGSKEIVDYGGVFSL-- 249 (306)
Q Consensus 177 r~g~~~--~~~~~~a~~l~-~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~-ipvia~GGI~s~~~~~~~l~~-- 249 (306)
|.|... .-+.+++..+. +.|++++++|||+++++|...++|+++.++.+.. . +|+|+||+|.|-+|+.+-+..
T Consensus 398 RTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p 477 (614)
T KOG2333|consen 398 RTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNP 477 (614)
T ss_pred ecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCC
Confidence 987533 23677777777 8999999999999999999999999999999988 4 899999999999999888875
Q ss_pred ---hhhhccccCCCC-CchHH
Q psy4398 250 ---NCAFLRNHYPVE-KLPKT 266 (306)
Q Consensus 250 ---~v~vGrall~~p-~~~~~ 266 (306)
++||||+.|--| .+.++
T Consensus 478 ~v~svMIaRGALIKPWIFtEI 498 (614)
T KOG2333|consen 478 NVDSVMIARGALIKPWIFTEI 498 (614)
T ss_pred CcceEEeeccccccchHhhhh
Confidence 469999988888 55655
|
|
| >KOG1436|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=192.87 Aligned_cols=273 Identities=20% Similarity=0.159 Sum_probs=201.9
Q ss_pred cccccceeeeccc--ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhh-------hhhhhhc
Q psy4398 7 RLLLVKIFYVLDM--ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK-------TERKVND 77 (306)
Q Consensus 7 ~~~~~~~~~~~~~--~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~-------~~~~~~~ 77 (306)
.|-+++.+++.|. +-+++-|-+|+|||.+|++.+.+..+...++ ..|+|++.++.+++.+... .-....+
T Consensus 69 s~gl~Pr~~~~d~~~L~~k~~g~~f~NPiglAAGfdk~~eaidgL~-~~gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~ 147 (398)
T KOG1436|consen 69 SWGLLPRDRVADDASLETKVLGRKFSNPIGLAAGFDKNAEAIDGLA-NSGFGFIEIGSVTPKPQEGNPKPRVFRLPEDLA 147 (398)
T ss_pred HhCCCchhccCCccchhhHHhhhhccCchhhhhccCcchHHHHHHH-hCCCceEEecccccCCCCCCCCCceEecccccc
Confidence 3556677777554 8888999999999999999998888888888 6999999999998765431 1223356
Q ss_pred ccccccccCCCCCceee-------ecCCCCCCceEEEecCC--CHHHHHHHHHHHh---cCCCEEEEccCCCccccccCC
Q psy4398 78 LLNTIDFVDPLDGSVVF-------RTCPREKNKIILQIGTA--DPERALEAAKKVE---HDVAAIDINMGCPKQFSLTGG 145 (306)
Q Consensus 78 ~l~~~~~~~~~~~~~~~-------~~~~~~~~p~ivql~g~--~~~~~~~aa~~~~---~g~d~veln~gcP~~~~~~~~ 145 (306)
.+|.++|.+.|+...+. ...++...++.|+++-+ +.+...+..+-++ +.+|.++||.+|||+
T Consensus 148 vINryGfns~Gi~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNt------ 221 (398)
T KOG1436|consen 148 VINRYGFNSEGIDAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNT------ 221 (398)
T ss_pred hhhccCCCcccHHHHHHHHHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCC------
Confidence 78889998876532111 12234556788998643 4455555555443 468999999999995
Q ss_pred ccccccCChHHHHHHHHHHHhc---c----cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC-----------
Q psy4398 146 MGAALLSTPDIACNILTTLISN---L----SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK----------- 207 (306)
Q Consensus 146 ~G~~l~~~~~~~~eiv~~v~~~---~----~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~----------- 207 (306)
-|-.-++.-..+.+.+..+..+ . ..|+.+|+......++..+++..+.+.++|.+++++.+.
T Consensus 222 pGlr~lq~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~ 301 (398)
T KOG1436|consen 222 PGLRSLQKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKL 301 (398)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCcccccccc
Confidence 2333333333333333333222 1 359999999666667899999999999999999876431
Q ss_pred -------CCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhcccc-CCCC-CchHH--HHHHH
Q psy4398 208 -------AERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNH-YPVE-KLPKT--ILYAH 271 (306)
Q Consensus 208 -------~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGral-l~~p-~~~~~--~l~~~ 271 (306)
.+.+..|..++.++++++.+ .||||++|||.|.+|+.+-+.+| +|+++++ |.+| .++++ +|.+.
T Consensus 302 ~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~~kIk~El~~l 381 (398)
T KOG1436|consen 302 KEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAIIEKIKRELSAL 381 (398)
T ss_pred ccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCchhHHHHHHHHHHH
Confidence 12233455788999999998 69999999999999999998875 5999998 7899 77776 99999
Q ss_pred HHhcCCCCCcceehhhccceeeEEEEcCc
Q psy4398 272 CKYKRFEVPKYETVQYEKLFRSLVTVNGK 300 (306)
Q Consensus 272 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (306)
|+++| |++.++++|+
T Consensus 382 l~~kG--------------~t~v~d~iG~ 396 (398)
T KOG1436|consen 382 LKAKG--------------FTSVDDAIGK 396 (398)
T ss_pred HHhcC--------------CCcHHHhccC
Confidence 99999 9999999987
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=179.83 Aligned_cols=213 Identities=15% Similarity=0.052 Sum_probs=163.3
Q ss_pred ccccccccccCCceEEccCCCCC------CHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRMN------TLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t------~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++.|.+++.|+++|||.+.+ +..++..+++.|...+++.+.... ... +
T Consensus 54 ~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~-----~~~------------------i 110 (299)
T cd02809 54 TSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTS-----LEE------------------V 110 (299)
T ss_pred CceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCC-----HHH------------------H
Confidence 78899999999999999997654 345777788899888888755211 000 0
Q ss_pred eecCCCCCCceEEEecCC-CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 94 FRTCPREKNKIILQIGTA-DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g~-~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+. .+.|+.+||.+. +++...++++++.+ |+++|++|++||+...+ ...++++++++.++.|
T Consensus 111 ~~~---~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-------------~~~~~i~~l~~~~~~p 174 (299)
T cd02809 111 AAA---APGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-------------LTWDDLAWLRSQWKGP 174 (299)
T ss_pred HHh---cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC-------------CCHHHHHHHHHhcCCC
Confidence 000 125899999876 88888888888775 99999999999984222 2346788889888999
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~ 249 (306)
|++|.. . ..+.++.++++|+|+|++++....+.+.++..++.+.++++.+ ++|||++|||++..|+.+++..
T Consensus 175 vivK~v--~----s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~l 248 (299)
T cd02809 175 LILKGI--L----TPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALAL 248 (299)
T ss_pred EEEeec--C----CHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHc
Confidence 999965 2 2466889999999999997755444455677899999999988 4999999999999999999987
Q ss_pred h---hhhccccCCCCC---------ch-H--HHHHHHHHhcCC
Q psy4398 250 N---CAFLRNHYPVEK---------LP-K--TILYAHCKYKRF 277 (306)
Q Consensus 250 ~---v~vGrall~~p~---------~~-~--~~l~~~~~~~g~ 277 (306)
| |++||+++.... +. . .+|+.+|...|+
T Consensus 249 GAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~ 291 (299)
T cd02809 249 GADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGC 291 (299)
T ss_pred CCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5 499999875421 11 1 288899999994
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=173.69 Aligned_cols=250 Identities=17% Similarity=0.179 Sum_probs=165.0
Q ss_pred eeeccc-ccccccccccCCceEEccCCCCCCHH------HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccC
Q psy4398 14 FYVLDM-ANANQANINYSNKIILAPMVRMNTLP------FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86 (306)
Q Consensus 14 ~~~~~~-~~~~~~~l~l~n~i~lAPm~~~t~~~------~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (306)
+...+. +++++.|.+|++||+.|||++.+... +...+++.|..+.+...-. .... +. ...+
T Consensus 36 ~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~---~~~~-~~---~~~~----- 103 (333)
T TIGR02151 36 INLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRA---ALKD-PE---TADT----- 103 (333)
T ss_pred CCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchh---hccC-hh---hHhH-----
Confidence 334444 88999999999999999999988433 4445677887666654211 0000 00 0000
Q ss_pred CCCCceeeecCCCCCCceEEEecCCCHHH--HHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 87 PLDGSVVFRTCPREKNKIILQIGTADPER--ALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 87 ~~~~~~~~~~~~~~~~p~ivql~g~~~~~--~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
. ...+.. ..+.|++++++...... +.++.+.++. ++|+++||+.|++......++ .+.+.+.+.++.
T Consensus 104 ---~-~~vr~~-~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~-----~~f~~~le~i~~ 173 (333)
T TIGR02151 104 ---F-EVVREE-APNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGD-----RNFKGWLEKIAE 173 (333)
T ss_pred ---H-HHHHHh-CCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCC-----cCHHHHHHHHHH
Confidence 0 000111 13579999997533211 3333333332 689999999998865444433 234557789999
Q ss_pred HHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC-------CC------CCCCc-----HHHHHHHHh
Q psy4398 164 LISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE-------RP------RHRNR-----IEMIRTLTQ 225 (306)
Q Consensus 164 v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~-------~~------~~p~~-----~~~v~~i~~ 225 (306)
+++.+++||.||.... ....+.|+.++++|+|+|+++++.... +. ....+ .+.+.++++
T Consensus 174 i~~~~~vPVivK~~g~---g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~ 250 (333)
T TIGR02151 174 ICSQLSVPVIVKEVGF---GISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS 250 (333)
T ss_pred HHHhcCCCEEEEecCC---CCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHh
Confidence 9999999999998732 236799999999999999999864211 00 00012 245566666
Q ss_pred -hCCCcEEEecCCCCHHHHHHHHHhh---hhhccccC-----CCCCch-H----H--HHHHHHHhcCCCCCcceehhhcc
Q psy4398 226 -HLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHY-----PVEKLP-K----T--ILYAHCKYKRFEVPKYETVQYEK 289 (306)
Q Consensus 226 -~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall-----~~p~~~-~----~--~l~~~~~~~g~~~~~~~~~~~~~ 289 (306)
.+++|||++|||++..++.+++..| +++||+++ .+|... + + +|+.||...|
T Consensus 251 ~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G------------- 317 (333)
T TIGR02151 251 DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTG------------- 317 (333)
T ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC-------------
Confidence 4689999999999999999999875 49999988 556322 1 1 9999999999
Q ss_pred ceeeEEEEcCccc
Q psy4398 290 LFRSLVTVNGKQY 302 (306)
Q Consensus 290 ~~~~~~~~~~~~~ 302 (306)
++++.++++..|
T Consensus 318 -~~~i~el~~~~~ 329 (333)
T TIGR02151 318 -AKTIAELKKVPL 329 (333)
T ss_pred -CCCHHHHccCCe
Confidence 666666665544
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-19 Score=164.91 Aligned_cols=231 Identities=18% Similarity=0.200 Sum_probs=158.1
Q ss_pred ccccccccccCCceEEccCCCCCCHH------HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLP------FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~------~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++.|.+++.|++.|||++.+... +...+++.|..+.+..+-.. .... ... ..+. .
T Consensus 50 ~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~--~~~~-~~~-~~~~------------~ 113 (352)
T PRK05437 50 LSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAA--LKDP-ELA-DSFS------------V 113 (352)
T ss_pred ceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhh--ccCh-hhH-HHHH------------H
Confidence 88888899999999999999988744 34456778877777664210 0000 000 0000 0
Q ss_pred eecCCCCCCceEEEecCC-----CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 94 FRTCPREKNKIILQIGTA-----DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g~-----~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
.+.. ..+.|+++||+.. +++++.++.+.+ ++|+++||++||+.-....++ .+.+.+.+.++++++.+
T Consensus 114 vr~~-~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~--~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~ 185 (352)
T PRK05437 114 VRKV-APDGLLFANLGAVQLYGYGVEEAQRAVEMI--EADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSAL 185 (352)
T ss_pred HHHH-CCCceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhh
Confidence 0001 1256899988754 345555555544 679999999988754433322 34556778999999999
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC-------C--------C---CCCCcHHHHHHHHhhC-CC
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE-------R--------P---RHRNRIEMIRTLTQHL-KI 229 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~-------~--------~---~~p~~~~~v~~i~~~~-~i 229 (306)
++||.+|.... ....+.|+.++++|+|+|+++++.... + + .+.+..+.+.++++.+ ++
T Consensus 186 ~vPVivK~~g~---g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~i 262 (352)
T PRK05437 186 PVPVIVKEVGF---GISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDL 262 (352)
T ss_pred CCCEEEEeCCC---CCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCC
Confidence 99999998832 234788999999999999998753100 1 0 0122446778888874 89
Q ss_pred cEEEecCCCCHHHHHHHHHhhh---hhccccCCC-----CC----ch-HH--HHHHHHHhcCC
Q psy4398 230 PVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV-----EK----LP-KT--ILYAHCKYKRF 277 (306)
Q Consensus 230 pvia~GGI~s~~~~~~~l~~~v---~vGrall~~-----p~----~~-~~--~l~~~~~~~g~ 277 (306)
|||++|||++..|+.+++..|+ ++||+++.. +. +. .+ +|+.+|...|+
T Consensus 263 pvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~ 325 (352)
T PRK05437 263 PIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGA 325 (352)
T ss_pred eEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998764 999988754 31 11 12 99999999993
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=161.82 Aligned_cols=232 Identities=17% Similarity=0.188 Sum_probs=151.0
Q ss_pred ccccccccccCCceEEccCCCCCC------HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRMNT------LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~------~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++.|.++++||+.|||++.+. ..+...+++.|....+-.. .. ........ ..+..
T Consensus 42 ~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~-~~-~~~~~e~~--~~~~~------------ 105 (326)
T cd02811 42 LSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQ-RA-ALEDPELA--ESFTV------------ 105 (326)
T ss_pred CeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCc-hh-hccChhhh--hHHHH------------
Confidence 888999999999999999998773 3344445666744333221 00 00000000 00000
Q ss_pred eecCCCCCCceEEEecCC-----CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 94 FRTCPREKNKIILQIGTA-----DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g~-----~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
.+.. ..+.|+++|++.. +++++.++.+.+ ++|+++||+.||+......++ .+.+.+.+.++.+++.+
T Consensus 106 vr~~-~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~--~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~ 177 (326)
T cd02811 106 VREA-PPNGPLIANLGAVQLNGYGVEEARRAVEMI--EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKAL 177 (326)
T ss_pred HHHh-CCCceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhc
Confidence 0111 1246888888754 455555554444 689999999887753333322 34556778899999999
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC---------C--------CCC---CCCcHHHHHHHHhhC-
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA---------E--------RPR---HRNRIEMIRTLTQHL- 227 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~---------~--------~~~---~p~~~~~v~~i~~~~- 227 (306)
++||.+|.... ..+.+.++.++++|+|+|++++.... + .+. +......+.++++.+
T Consensus 178 ~vPVivK~~g~---g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~ 254 (326)
T cd02811 178 SVPVIVKEVGF---GISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP 254 (326)
T ss_pred CCCEEEEecCC---CCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC
Confidence 99999999732 23468899999999999999874110 0 000 111235667777777
Q ss_pred CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC----CC-----CchHH--HHHHHHHhcCCC
Q psy4398 228 KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP----VE-----KLPKT--ILYAHCKYKRFE 278 (306)
Q Consensus 228 ~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~----~p-----~~~~~--~l~~~~~~~g~~ 278 (306)
++|||++|||++..|+.+++..|+ ++||++|. ++ .+..+ +|+.||...|++
T Consensus 255 ~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~el~~~m~~~G~~ 319 (326)
T cd02811 255 DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEELRTAMFLTGAK 319 (326)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 899999999999999999998754 99997654 32 11122 999999999943
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-18 Score=158.14 Aligned_cols=177 Identities=14% Similarity=0.181 Sum_probs=140.9
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCP 98 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (306)
++.++++++|++||++|||.++|+.+||.+++++|+ |+ ++.+.+....
T Consensus 34 ~~~~i~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~-------------------------- 82 (369)
T TIGR01304 34 TAWQIDAYRFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRH-------------------------- 82 (369)
T ss_pred ceeEEcceecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcC--------------------------
Confidence 667889999999999999999999999999999987 76 3333332211
Q ss_pred CCCCceEEEecC--CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 99 REKNKIILQIGT--ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 99 ~~~~p~ivql~g--~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
+...++.+||++ .+++. +++++.+++ +++. .+++++.++++++++.. ++||
T Consensus 83 ~~~~~~~~QI~g~~~~~~~-a~aa~~~~e~~~~~----------------------~~p~l~~~ii~~vr~a~---Vtvk 136 (369)
T TIGR01304 83 EDPDPAIAKIAEAYEEGDQ-AAATRLLQELHAAP----------------------LKPELLGERIAEVRDSG---VITA 136 (369)
T ss_pred CCHHHHHHHHhhcCCChHH-HHHHHHHHHcCCCc----------------------cChHHHHHHHHHHHhcc---eEEE
Confidence 012367799998 56656 888888876 5554 36899999999999873 8999
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC-CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP-RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC--- 251 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~-~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v--- 251 (306)
+|.+ .....++++.++++|+|.|++|+++.++.| .+..+|..+.++.+.+++|||+ |+|.|.+++.++++.|+
T Consensus 137 iRl~--~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV 213 (369)
T TIGR01304 137 VRVS--PQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGV 213 (369)
T ss_pred EecC--CcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEE
Confidence 9963 457889999999999999999999987766 4445678888888889999997 89999999999998754
Q ss_pred hhccc
Q psy4398 252 AFLRN 256 (306)
Q Consensus 252 ~vGra 256 (306)
++|+.
T Consensus 214 ~~G~g 218 (369)
T TIGR01304 214 IVGPG 218 (369)
T ss_pred EECCC
Confidence 55653
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >KOG1799|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-17 Score=145.46 Aligned_cols=263 Identities=13% Similarity=0.144 Sum_probs=189.4
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhh--------hhhhhh-------hhcccccccc
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKL--------VKTERK-------VNDLLNTIDF 84 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~--------~~~~~~-------~~~~l~~~~~ 84 (306)
..+..+|++..||+.+++.+..+..++...+...|+|.+.+++...+.- ....+. .+++...+++
T Consensus 103 ~~vd~~G~k~~npf~~~s~Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~t~~~~~~p~~~i~~niel 182 (471)
T KOG1799|consen 103 ELVDWDGQKPANPFHQKSKPPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSPTKRSCFIPKRPIPTNIEL 182 (471)
T ss_pred hhccccCccCCCccccCCCCCCccHHHHHhhhhcccchhheeeeecchhhheecccceeeccCCCCccccCCCccchhhh
Confidence 4578899999999999999988888887777788999999887664321 111110 1112222223
Q ss_pred cCCCC-Cc--eeeecCCCCCCceEE---Ee-cCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHH
Q psy4398 85 VDPLD-GS--VVFRTCPREKNKIIL---QI-GTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDI 156 (306)
Q Consensus 85 ~~~~~-~~--~~~~~~~~~~~p~iv---ql-~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~ 156 (306)
+...- +. ..+..+++ ..|+.+ ++ +-++..+|.+++...++ |.|.+|+|++||+.. ...+.|.++.+.|..
T Consensus 183 Isdr~~e~~L~~f~eLk~-~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm-~ergmgla~gq~p~v 260 (471)
T KOG1799|consen 183 ISDRKAEQYLGTFGELKN-VEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGM-CERGMGLALGQCPIV 260 (471)
T ss_pred hccchHHHHHHHHHHhcc-cCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCC-ccccccceeccChhh
Confidence 32100 00 01111221 123333 32 23677889999998875 999999999999974 345789999999999
Q ss_pred HHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc---------------------cCCCCCCC---
Q psy4398 157 ACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG---------------------RTKAERPR--- 212 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~---------------------~~~~~~~~--- 212 (306)
..|+...++..+.+|++-|+. ++.++..+.++...+.|+.+|.... ++-.++|+
T Consensus 261 ~~EvC~Wi~A~~~Ip~~~kmT--PNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~A 338 (471)
T KOG1799|consen 261 DCEVCGWINAKATIPMVSKMT--PNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKA 338 (471)
T ss_pred hHHHhhhhhhccccccccccC--CCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccc
Confidence 999999999999999999999 8888899999999999999987321 11122332
Q ss_pred -CCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCchH-H--HHHHHHHhcCCCCCcce
Q psy4398 213 -HRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLPK-T--ILYAHCKYKRFEVPKYE 283 (306)
Q Consensus 213 -~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~~-~--~l~~~~~~~g~~~~~~~ 283 (306)
.|..+.-+..|++.. ..|+.+.|||-+.+|+.+.+-.| +|++++... |.-..+ . +|+++|..+|
T Consensus 339 vRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~~~V~~~Ca~LK~~m~~~~------- 411 (471)
T KOG1799|consen 339 VRPIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTLCAELKDFMKQHN------- 411 (471)
T ss_pred cchHHHHHHHHHHHHhhcCccccccCcccccchhhHhhcCCcHhhhhhHHHhcCcchHHHHHHHHHHHHHHcC-------
Confidence 466777777888777 78999999988888777777654 499998754 543333 2 9999999999
Q ss_pred ehhhccceeeEEEEcCc
Q psy4398 284 TVQYEKLFRSLVTVNGK 300 (306)
Q Consensus 284 ~~~~~~~~~~~~~~~~~ 300 (306)
|+++++|||.
T Consensus 412 -------~~ti~~~~G~ 421 (471)
T KOG1799|consen 412 -------FSTIEEFRGH 421 (471)
T ss_pred -------chhhhhccCc
Confidence 9999999996
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-14 Score=130.45 Aligned_cols=200 Identities=18% Similarity=0.194 Sum_probs=139.6
Q ss_pred cccCCceEEccCCCCCCHHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceE
Q psy4398 27 INYSNKIILAPMVRMNTLPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKII 105 (306)
Q Consensus 27 l~l~n~i~lAPm~~~t~~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i 105 (306)
+.++.||+.|||.+.|+..+...+.++| .|.+-....+++.+....+... ...+.|+.
T Consensus 8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~---------------------~~t~~pfg 66 (307)
T TIGR03151 8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVK---------------------ELTDKPFG 66 (307)
T ss_pred hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHH---------------------HhcCCCcE
Confidence 4678999999999999999888766655 5777665544433322111110 01246888
Q ss_pred EEecCCCHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHH
Q psy4398 106 LQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD 184 (306)
Q Consensus 106 vql~g~~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~ 184 (306)
+++....+. +.+..+ .++++.+.|.++.+.|. ++++.+++. ++.++..+.
T Consensus 67 vn~~~~~~~-~~~~~~~~~~~~v~~v~~~~g~p~--------------------~~i~~lk~~-g~~v~~~v~------- 117 (307)
T TIGR03151 67 VNIMLLSPF-VDELVDLVIEEKVPVVTTGAGNPG--------------------KYIPRLKEN-GVKVIPVVA------- 117 (307)
T ss_pred EeeecCCCC-HHHHHHHHHhCCCCEEEEcCCCcH--------------------HHHHHHHHc-CCEEEEEcC-------
Confidence 988765443 233334 34569999998765542 367777765 778877766
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
..+.++.++++|+|.|+++++...+......++.++.++++.+++|||++|||.|.+++.+++..| +++|+.++.-+
T Consensus 118 s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~ 197 (307)
T TIGR03151 118 SVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAK 197 (307)
T ss_pred CHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhccc
Confidence 367789999999999999998655443223478999999999999999999999999999999874 59999987644
Q ss_pred -CchHHHHHHHHHhcC
Q psy4398 262 -KLPKTILYAHCKYKR 276 (306)
Q Consensus 262 -~~~~~~l~~~~~~~g 276 (306)
.......++.+.+.+
T Consensus 198 Es~~~~~~k~~l~~~~ 213 (307)
T TIGR03151 198 ECNVHPNYKEKVLKAK 213 (307)
T ss_pred ccCCCHHHHHHHHhCC
Confidence 222234555554434
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-13 Score=120.66 Aligned_cols=198 Identities=16% Similarity=0.187 Sum_probs=133.7
Q ss_pred CCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEe
Q psy4398 30 SNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQI 108 (306)
Q Consensus 30 ~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql 108 (306)
++||++|||++.++..++..+.++|+ |++-+++++.+......+.... ..+.|+.+|+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~---------------------~~~~~~~v~~ 60 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRA---------------------LTDKPFGVNL 60 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHH---------------------hcCCCeEEeE
Confidence 68999999999999999998877775 8887777765544322111100 0124677888
Q ss_pred cCCCH-HHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHH
Q psy4398 109 GTADP-ERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 109 ~g~~~-~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~ 186 (306)
..++. ..+.+.++.+. .|+|+|.++.+.| .++++.+++ .++++.+++. + .
T Consensus 61 i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~~--------------------~~~~~~~~~-~~i~~i~~v~---~----~ 112 (236)
T cd04730 61 LVPSSNPDFEALLEVALEEGVPVVSFSFGPP--------------------AEVVERLKA-AGIKVIPTVT---S----V 112 (236)
T ss_pred ecCCCCcCHHHHHHHHHhCCCCEEEEcCCCC--------------------HHHHHHHHH-cCCEEEEeCC---C----H
Confidence 87653 23445455554 4999999975521 123444443 3677777765 1 2
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p 261 (306)
+.++.+.+.|+|+|.++++...+.... ...+++++++++.+++||++.|||++.+++.++++. ++++|++++..+
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence 456677789999999987633222111 235789999999999999999999999999999986 569999998876
Q ss_pred CchH-HHHHHHHHhcC
Q psy4398 262 KLPK-TILYAHCKYKR 276 (306)
Q Consensus 262 ~~~~-~~l~~~~~~~g 276 (306)
..+. .+.++.+.+.+
T Consensus 193 e~~~~~~~~~~~~~~~ 208 (236)
T cd04730 193 ESGASPAYKQALLAAT 208 (236)
T ss_pred ccCCCHHHHHHHHcCC
Confidence 4432 24444444444
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-14 Score=124.99 Aligned_cols=142 Identities=16% Similarity=0.233 Sum_probs=114.3
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEE-----EeccCC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC-----KIRVFH 180 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v-----Kir~g~ 180 (306)
+|++| +...+.++.+.++.|++.+-+ |+.+.++|+++.++++++.+.+.+++.+ |++ ||
T Consensus 78 v~vgG-Girs~edv~~~l~~Ga~kvvi--------------Gs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw 141 (241)
T PRK14024 78 VELSG-GIRDDESLEAALATGCARVNI--------------GTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GW 141 (241)
T ss_pred EEEcC-CCCCHHHHHHHHHCCCCEEEE--------------CchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-Ce
Confidence 56644 334555555666778887655 6788899999999999998776544444 332 66
Q ss_pred Ch--HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH------hhhh
Q psy4398 181 NE--ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS------LNCA 252 (306)
Q Consensus 181 ~~--~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~------~~v~ 252 (306)
+. .+..++++.+++.|++.+++|++++++.+.+| +|++++++++.+++|||++|||+|.+|+.++.+ .+++
T Consensus 142 ~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~ 220 (241)
T PRK14024 142 TRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAI 220 (241)
T ss_pred eecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEE
Confidence 43 34789999999999999999999999999987 999999999999999999999999999998863 2569
Q ss_pred hccccCCCCCch
Q psy4398 253 FLRNHYPVEKLP 264 (306)
Q Consensus 253 vGrall~~p~~~ 264 (306)
+||++|.++.-.
T Consensus 221 igra~~~g~~~~ 232 (241)
T PRK14024 221 VGKALYAGAFTL 232 (241)
T ss_pred EeHHHHcCCCCH
Confidence 999999988433
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-13 Score=123.62 Aligned_cols=194 Identities=14% Similarity=0.107 Sum_probs=131.9
Q ss_pred ccccccc-cccCCceEEccCCCCCCHHHHHHHHHc-CCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecC
Q psy4398 20 ANANQAN-INYSNKIILAPMVRMNTLPFRLLALDY-GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97 (306)
Q Consensus 20 ~~~~~~~-l~l~n~i~lAPm~~~t~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 97 (306)
+++++.+ +.++.||+.|||.++|+..++....+. |.|.+..++. .+......+. +
T Consensus 23 l~t~l~~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~-~~~~~~~i~~----------------------v 79 (325)
T cd00381 23 LSTKLTKNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMS-IEEQAEEVRK----------------------V 79 (325)
T ss_pred eeEEecCccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCC-HHHHHHHHHH----------------------h
Confidence 6778887 999999999999999999988865555 4588877643 2222111111 1
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEe
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKI 176 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKi 176 (306)
+ +...+.+..+.+++....+...+++|+|.|+++++.. +++.+.++++.+++... +||.+
T Consensus 80 k--~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G---------------~~~~~~~~i~~ik~~~p~v~Vi~-- 140 (325)
T cd00381 80 K--GRLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHG---------------HSVYVIEMIKFIKKKYPNVDVIA-- 140 (325)
T ss_pred c--cCceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCC---------------CcHHHHHHHHHHHHHCCCceEEE--
Confidence 1 1223334445566666666666677999999987541 22456778888888753 45544
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEccc------CCCCCCCCCCcHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHH
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGR------TKAERPRHRNRIEMIRTLTQHL---KIPVIANGGSKEIVDYGGVF 247 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~------~~~~~~~~p~~~~~v~~i~~~~---~ipvia~GGI~s~~~~~~~l 247 (306)
. + -.+.+.++.+.++|+|+|.++.. ++.....+.+.+..+..+.+.. ++|||+.|||.+..++.+++
T Consensus 141 G---~-v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAl 216 (325)
T cd00381 141 G---N-VVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKAL 216 (325)
T ss_pred C---C-CCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Confidence 1 1 12467778888999999998532 2222223445777777776654 69999999999999999999
Q ss_pred Hhh---hhhccccCC
Q psy4398 248 SLN---CAFLRNHYP 259 (306)
Q Consensus 248 ~~~---v~vGrall~ 259 (306)
..| +++||.+..
T Consensus 217 a~GA~~VmiGt~fa~ 231 (325)
T cd00381 217 AAGADAVMLGSLLAG 231 (325)
T ss_pred HcCCCEEEecchhcc
Confidence 875 499999875
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >KOG0134|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-14 Score=131.75 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=116.5
Q ss_pred HHHHHHHHHHh-cCCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhcccc-cEEEEecc----
Q psy4398 114 ERALEAAKKVE-HDVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI-PVSCKIRV---- 178 (306)
Q Consensus 114 ~~~~~aa~~~~-~g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~---- 178 (306)
+.|..||+.+. .|||+||||-. +|..|.|+|+||+++++|.+++.|++++|++.++- -+.+..+.
T Consensus 174 Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~f 253 (400)
T KOG0134|consen 174 DRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNEF 253 (400)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchhh
Confidence 45777777774 59999999843 79999999999999999999999999999999841 12222222
Q ss_pred ---CCChHHHHHHHHHHHHcCCcEEEEcccCC-------CCCCC----CCCcHHHHHHHHhhCCCcEEEe-cCCCCHHHH
Q psy4398 179 ---FHNEADTIALCKRLEACGIIAIGVHGRTK-------AERPR----HRNRIEMIRTLTQHLKIPVIAN-GGSKEIVDY 243 (306)
Q Consensus 179 ---g~~~~~~~~~a~~l~~~G~d~i~v~~~~~-------~~~~~----~p~~~~~v~~i~~~~~ipvia~-GGI~s~~~~ 243 (306)
+++.++...+|..+++.|.|.+-+++.+. ..+.+ ....++....++...+.|+|.. ||.++.+.+
T Consensus 254 q~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~~ 333 (400)
T KOG0134|consen 254 QDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTREAM 333 (400)
T ss_pred hhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHHHH
Confidence 45667889999999999999555544321 11111 1124677788888887776655 568999999
Q ss_pred HHHHHh----hhhhccccCCCCCchHH
Q psy4398 244 GGVFSL----NCAFLRNHYPVEKLPKT 266 (306)
Q Consensus 244 ~~~l~~----~v~vGrall~~p~~~~~ 266 (306)
.++++. ++.+||.++++|+++++
T Consensus 334 ~eav~~~~T~~ig~GR~f~anPDLp~r 360 (400)
T KOG0134|consen 334 VEAVKSGRTDLIGYGRPFLANPDLPKR 360 (400)
T ss_pred HHHHhcCCceeEEecchhccCCchhHH
Confidence 999986 56999999999999976
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=128.90 Aligned_cols=175 Identities=14% Similarity=0.184 Sum_probs=130.9
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCP 98 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (306)
++.++.++.++.||+.|||.++++..++...+++|. |++..+.+.. +.
T Consensus 37 ls~~~~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~~-------~~------------------------ 85 (368)
T PRK08649 37 TSWQIDAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLWT-------RY------------------------ 85 (368)
T ss_pred eeeeecceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeeccccc-------cC------------------------
Confidence 667889999999999999999999999998878775 8888654320 00
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 99 REKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
....++..||.+.++ .++++.+++ +++ | .+|+++.++++++++. + +.+|++
T Consensus 86 ~~~e~l~~qi~~~~~---~~~~~~~~~~~~~--------P--------------~~p~l~~~iv~~~~~~-~--V~v~vr 137 (368)
T PRK08649 86 EDPEPILDEIASLGK---DEATRLMQELYAE--------P--------------IKPELITERIAEIRDA-G--VIVAVS 137 (368)
T ss_pred CCHHHHHHHHHhcCc---HHHHHHHHHhhcC--------C--------------CCHHHHHHHHHHHHhC-e--EEEEEe
Confidence 011234455555444 334444443 222 2 4689999999999986 4 556666
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AF 253 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~v 253 (306)
. +..+..++++.+.++|+|.|++|+|+.++.|.+.. ++..+.++.+..++|||+ |+|.|.++++++++.|+ ++
T Consensus 138 ~--~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 138 L--SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred c--CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 3 34567899999999999999999999888887665 677777777778999999 88999999999998754 55
Q ss_pred ccc
Q psy4398 254 LRN 256 (306)
Q Consensus 254 Gra 256 (306)
|+.
T Consensus 215 G~G 217 (368)
T PRK08649 215 GIG 217 (368)
T ss_pred CCC
Confidence 543
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=110.05 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=127.9
Q ss_pred eEEccCCCCCC---HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec
Q psy4398 33 IILAPMVRMNT---LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG 109 (306)
Q Consensus 33 i~lAPm~~~t~---~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~ 109 (306)
+++++|++..+ ..+...+.++|++++.++.....+....... .+.+....+..+.|+++|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 65 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDD---------------KEVLKEVAAETDLPLGVQLA 65 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCcc---------------ccHHHHHHhhcCCcEEEEEc
Confidence 46788987642 2233345578899999887654432210000 00111222334679999998
Q ss_pred CCCHHHHHH-HHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHH
Q psy4398 110 TADPERALE-AAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~-aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~ 186 (306)
..++.++.. +++.+. .|+|+|+||.+||+. +++..++++++++.+ +.|+.+|++........
T Consensus 66 ~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~- 130 (200)
T cd04722 66 INDAAAAVDIAAAAARAAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKLSPTGELAAA- 130 (200)
T ss_pred cCCchhhhhHHHHHHHHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccchh-
Confidence 887766543 345565 499999999999762 788899999999887 89999999853221111
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCC--cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~--~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
.+.+.|+|++.++++........+. ....+..+++..++||+++|||++.+++.++++.++ ++||
T Consensus 131 ----~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 131 ----AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred ----hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 1688999999998876544332221 235566777778999999999999999999998754 5554
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.6e-12 Score=116.98 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=140.2
Q ss_pred ceeeeccc-ccccccccccCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 12 KIFYVLDM-ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 12 ~~~~~~~~-~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
+...+.+. +++++++++++-|++.++|....+..+...+++.|. +.+.- + .++......+
T Consensus 18 p~~s~~dvdlst~~~~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~-~~e~~~~~~r---------------- 79 (326)
T PRK05458 18 IVNSRSECDTSVTLGPRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-F-DPEARIPFIK---------------- 79 (326)
T ss_pred CCCCHHHcccceEECCcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-C-CHHHHHHHHH----------------
Confidence 44444444 889999999999999999987667777777777664 43333 2 3322111111
Q ss_pred CceeeecCCCCCCceEEEec-CCCHHHHHHHHHHHhcC--CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh
Q psy4398 90 GSVVFRTCPREKNKIILQIG-TADPERALEAAKKVEHD--VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS 166 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~g--~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~ 166 (306)
..+.. .+++++. +.+++++.++.+.+++| +|.|.|....|+ .+.+.++++.+++
T Consensus 80 ------~~~~~--~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh---------------~~~~~e~I~~ir~ 136 (326)
T PRK05458 80 ------DMHEQ--GLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGH---------------SDSVINMIQHIKK 136 (326)
T ss_pred ------hcccc--ccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCc---------------hHHHHHHHHHHHh
Confidence 11111 2355544 45678888888888885 499999877654 3567788999999
Q ss_pred ccc-ccEEEE-eccCCChHHHHHHHHHHHHcCCcEEEEccc---C---CCCCCCCCCcHH--HHHHHHhhCCCcEEEecC
Q psy4398 167 NLS-IPVSCK-IRVFHNEADTIALCKRLEACGIIAIGVHGR---T---KAERPRHRNRIE--MIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 167 ~~~-~pv~vK-ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~---~---~~~~~~~p~~~~--~v~~i~~~~~ipvia~GG 236 (306)
..+ .||.++ +. +.+-++.+.++|+|++.++.. . ......+.++|. .++++++.+++|||+.||
T Consensus 137 ~~p~~~vi~g~V~-------t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGG 209 (326)
T PRK05458 137 HLPETFVIAGNVG-------TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGG 209 (326)
T ss_pred hCCCCeEEEEecC-------CHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCC
Confidence 884 888887 55 456778888999999987522 1 111112234555 589999989999999999
Q ss_pred CCCHHHHHHHHHhhh---hhccccCC
Q psy4398 237 SKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 237 I~s~~~~~~~l~~~v---~vGrall~ 259 (306)
|.+..|+.+++..|+ ++|+++..
T Consensus 210 I~~~~Di~KaLa~GA~aV~vG~~~~~ 235 (326)
T PRK05458 210 IRTHGDIAKSIRFGATMVMIGSLFAG 235 (326)
T ss_pred CCCHHHHHHHHHhCCCEEEechhhcC
Confidence 999999999999864 99999874
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-12 Score=118.50 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=117.9
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccEEEEecc------
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCKIRV------ 178 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vKir~------ 178 (306)
+|++| +...+.++.+.+..|++.|.+| +.+.++++++.++++++. +.+.+++.+|.+.
T Consensus 77 v~~gG-Gi~s~~d~~~l~~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v 141 (258)
T PRK01033 77 LCYGG-GIKTLEQAKKIFSLGVEKVSIN--------------TAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDV 141 (258)
T ss_pred EEECC-CCCCHHHHHHHHHCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEE
Confidence 46644 4445556666666799999996 345678999999999985 3333444444330
Q ss_pred ---CCC---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH-Hh--
Q psy4398 179 ---FHN---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF-SL-- 249 (306)
Q Consensus 179 ---g~~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l-~~-- 249 (306)
||. ..+..++++.+++.|++.+.+|++++++.+.++ +|+.++++++.+++|||++|||.|.+|+.+++ +.
T Consensus 142 ~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~-d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~Gv 220 (258)
T PRK01033 142 YTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGY-DLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGA 220 (258)
T ss_pred EEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCC-CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCC
Confidence 231 234789999999999999999999999999986 99999999999999999999999999999998 44
Q ss_pred -hhhhccccCCC---CCc----hHHHHHHHHHhcCCC
Q psy4398 250 -NCAFLRNHYPV---EKL----PKTILYAHCKYKRFE 278 (306)
Q Consensus 250 -~v~vGrall~~---p~~----~~~~l~~~~~~~g~~ 278 (306)
++.+|++++.. +.. ....++.+|..++++
T Consensus 221 dgVivg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
T PRK01033 221 DAAAAGSLFVFKGVYKAVLINYPNGDEKEELLKAGIP 257 (258)
T ss_pred CEEEEcceeeeCcccccccccccHHHHHHHHHHcCCC
Confidence 56999999754 111 112667777777653
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.5e-13 Score=115.14 Aligned_cols=149 Identities=19% Similarity=0.283 Sum_probs=122.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc---
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--- 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--- 178 (306)
.++-+|++|. ..+...+...+..|++.|-+ |+...++|+++.++++.+.+++-+.+++|...
T Consensus 74 ~~~~vQvGGG-IRs~~~v~~ll~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav 138 (241)
T COG0106 74 TDVPVQVGGG-IRSLEDVEALLDAGVARVII--------------GTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAV 138 (241)
T ss_pred CCCCEEeeCC-cCCHHHHHHHHHCCCCEEEE--------------ecceecCHHHHHHHHHHcCCcEEEEEEccCCcccc
Confidence 3567899654 33445555566679999888 55667899999999999987776677777643
Q ss_pred -CCChH---HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh-h---
Q psy4398 179 -FHNEA---DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL-N--- 250 (306)
Q Consensus 179 -g~~~~---~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~-~--- 250 (306)
||... +..++++.+++.|+..+.+|+.++++...+| |++.+.++.+.+++|||++|||.|.+|.+.+.+. +
T Consensus 139 ~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~-n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G~~G 217 (241)
T COG0106 139 SGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGP-NVDLVKELAEAVDIPVIASGGVSSLDDIKALKELSGVEG 217 (241)
T ss_pred ccccccccCCHHHHHHHHHhcCCCeEEEEecccccccCCC-CHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCCCcE
Confidence 67543 4789999999999999999999999999997 9999999999999999999999999999988876 4
Q ss_pred hhhccccCCCCCchHH
Q psy4398 251 CAFLRNHYPVEKLPKT 266 (306)
Q Consensus 251 v~vGrall~~p~~~~~ 266 (306)
+.+|||||.+-.-...
T Consensus 218 vIvG~ALy~g~~~l~e 233 (241)
T COG0106 218 VIVGRALYEGKFTLEE 233 (241)
T ss_pred EEEehHHhcCCCCHHH
Confidence 4999999988754443
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=116.32 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccE-------------EEEeccCCC-
Q psy4398 117 LEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPV-------------SCKIRVFHN- 181 (306)
Q Consensus 117 ~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv-------------~vKir~g~~- 181 (306)
.++.+.+..|++.|-+ |....++|+++.++.+.+. +.+-+.+ .||++.+++
T Consensus 87 ~d~~~~~~~Ga~~viv--------------gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~ 152 (254)
T TIGR00735 87 EDVDKLLRAGADKVSI--------------NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRES 152 (254)
T ss_pred HHHHHHHHcCCCEEEE--------------ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCccc
Confidence 3344445569999988 3456678999999988884 4443333 356665433
Q ss_pred -hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccc
Q psy4398 182 -EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRN 256 (306)
Q Consensus 182 -~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGra 256 (306)
..+..++++.+++.|++.|.+|++++++...+ +++++++++++.+++|||++|||+|++++.++++. ++++|++
T Consensus 153 ~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g-~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 153 TGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSG-YDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASV 231 (254)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHH
Confidence 34588999999999999999999888766555 59999999999999999999999999999999985 4599999
Q ss_pred cCCCCCchHHHHHHHHHhcCCCC
Q psy4398 257 HYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 257 ll~~p~~~~~~l~~~~~~~g~~~ 279 (306)
++.+- ....++.++|++.||++
T Consensus 232 ~~~~~-~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 232 FHYRE-ITIGEVKEYLAERGIPV 253 (254)
T ss_pred HhCCC-CCHHHHHHHHHHCCCcc
Confidence 88653 33448899999999863
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=115.17 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=110.9
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccEEEEecc---------CC---Ch
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCKIRV---------FH---NE 182 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vKir~---------g~---~~ 182 (306)
..++.+.++.|+++|.++ ..+.++|+.+.++++.+. +.+..++++|.+. +| +.
T Consensus 83 ~~d~~~~l~~G~~~v~ig--------------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~ 148 (243)
T cd04731 83 LEDARRLLRAGADKVSIN--------------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTG 148 (243)
T ss_pred HHHHHHHHHcCCceEEEC--------------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecC
Confidence 344444445699999885 345578999999999885 3566777777542 22 23
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHY 258 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall 258 (306)
.+..++++.+++.|+|+|++|+++..+...+ .++++++++++.+++|||++|||+|+++++++++. ++++||+++
T Consensus 149 ~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~ 227 (243)
T cd04731 149 LDAVEWAKEVEELGAGEILLTSMDRDGTKKG-YDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHH
Confidence 4588999999999999999999887666555 48999999999999999999999999999999986 459999998
Q ss_pred CCCCchHHHHHHHHHhc
Q psy4398 259 PVEKLPKTILYAHCKYK 275 (306)
Q Consensus 259 ~~p~~~~~~l~~~~~~~ 275 (306)
.+-. ...++.++|.+|
T Consensus 228 ~~~~-~~~~~~~~~~~~ 243 (243)
T cd04731 228 FGEY-TIAELKEYLAER 243 (243)
T ss_pred cCCC-CHHHHHHHHhhC
Confidence 7542 233666666654
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=120.55 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=150.5
Q ss_pred ccccccccccCCceEEccCCC--C----CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR--M----NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~--~----t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++|||.. . .+......+.+.|...+++-..+ .++.. +
T Consensus 62 ~~t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~-~s~Ee----------------------i 118 (351)
T cd04737 62 TSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSN-TSLEE----------------------I 118 (351)
T ss_pred CceEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCC-CCHHH----------------------H
Confidence 888999999999999999983 1 12334445667777666554321 11100 0
Q ss_pred eecCCCCCCceEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc-C---Cc------------------ccc
Q psy4398 94 FRTCPREKNKIILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT-G---GM------------------GAA 149 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~-~---~~------------------G~~ 149 (306)
.... .+.+...|+.- .+.+...+..+++++ ||.+|-+...+|..-.+. + ++ |..
T Consensus 119 ~~~~--~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 196 (351)
T cd04737 119 AKAS--NGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKG 196 (351)
T ss_pred HHhc--CCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcc
Confidence 0000 13478899875 456666667777875 999999987664321110 0 00 000
Q ss_pred cc-----CChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHH
Q psy4398 150 LL-----STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLT 224 (306)
Q Consensus 150 l~-----~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~ 224 (306)
.. .++.+.-+.++.+++.++.||.+|-- . ..+.++.+.++|+|+|++++-...+...+|..++.+.+++
T Consensus 197 ~~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv--~----~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~ 270 (351)
T cd04737 197 ISEIYAAAKQKLSPADIEFIAKISGLPVIVKGI--Q----SPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIA 270 (351)
T ss_pred hhhhhhhccCCCCHHHHHHHHHHhCCcEEEecC--C----CHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHH
Confidence 00 01223346778899989999999932 1 3477788899999999994322222334567789999999
Q ss_pred hhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC---------CchH---HHHHHHHHhcCCC
Q psy4398 225 QHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE---------KLPK---TILYAHCKYKRFE 278 (306)
Q Consensus 225 ~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p---------~~~~---~~l~~~~~~~g~~ 278 (306)
+++ ++|||+.|||++..|+-+++..| |++||+++.+. ...+ .+|+.+|...|++
T Consensus 271 ~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 341 (351)
T cd04737 271 EAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTR 341 (351)
T ss_pred HHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 988 69999999999999999999875 49999987653 1111 2899999999943
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=115.22 Aligned_cols=132 Identities=23% Similarity=0.300 Sum_probs=103.0
Q ss_pred HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHc
Q psy4398 117 LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~ 195 (306)
.++|+++++ ||+.|.+|.+||+..+..+ |...+++|+.+. ++++.+++||+.|.|.|. ..-|+.|++.
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-----~~Ea~~L~~~ 95 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIMDAVSIPVMAKARIGH-----FVEAQILEAL 95 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-----HHHHHHHHHc
Confidence 567788875 9999999999999865444 889999999765 667778999999999643 5667777888
Q ss_pred CCcEEEEcccCC----------------------------------------C-------------------------CC
Q psy4398 196 GIIAIGVHGRTK----------------------------------------A-------------------------ER 210 (306)
Q Consensus 196 G~d~i~v~~~~~----------------------------------------~-------------------------~~ 210 (306)
|+|.|.-+.+.+ . ..
T Consensus 96 GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~g 175 (293)
T PRK04180 96 GVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTS 175 (293)
T ss_pred CCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 888886432210 0 00
Q ss_pred C----------CCCCcHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 211 P----------RHRNRIEMIRTLTQHLKIPVI--ANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 211 ~----------~~p~~~~~v~~i~~~~~ipvi--a~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
| ...++++.++++++..++||+ +.|||.+++++..+++.| +.+|++++.
T Consensus 176 yt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 176 MSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 1 123578999999999999998 999999999999999875 499999984
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-11 Score=108.40 Aligned_cols=202 Identities=12% Similarity=0.080 Sum_probs=139.5
Q ss_pred ceeeeccc-ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 12 KIFYVLDM-ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 12 ~~~~~~~~-~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
+-..+.|. +++++.++++.-||+.++|....+..+...+++.|.-.+.-++ .++......+
T Consensus 15 p~~s~~dVdlst~~~~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~-~~E~~~sfvr----------------- 76 (321)
T TIGR01306 15 IVNSRSECDTSVTLGKHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHRF-DEESRIPFIK----------------- 76 (321)
T ss_pred CCCCHHHceeeEEECCcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEecC-CHHHHHHHHH-----------------
Confidence 33334444 8899999999999999999877777788877787754555553 3333221111
Q ss_pred ceeeecCCCCCCceEEEecCCCHHHHHHHHHHHhcC--CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 91 SVVFRTCPREKNKIILQIGTADPERALEAAKKVEHD--VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g--~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
..++.+.++++.+ |.+++++..+...+++| .|.|-+..++- +.+.+.+.++.+++.+
T Consensus 77 -----k~k~~~L~v~~Sv-G~t~e~~~r~~~lv~a~~~~d~i~~D~ahg---------------~s~~~~~~i~~i~~~~ 135 (321)
T TIGR01306 77 -----DMQERGLFASISV-GVKACEYEFVTQLAEEALTPEYITIDIAHG---------------HSNSVINMIKHIKTHL 135 (321)
T ss_pred -----hccccccEEEEEc-CCCHHHHHHHHHHHhcCCCCCEEEEeCccC---------------chHHHHHHHHHHHHhC
Confidence 1111233344444 77788899998888887 69888865431 3467788899999988
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc---ccC---CCC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCH
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH---GRT---KAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~---~~~---~~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~ 240 (306)
..|+.++=.+ .+.+.|+.|.++|+|+|.++ ++. +.. ...+.+.+..+.+++++.++|||+.|||++.
T Consensus 136 p~~~vi~GnV-----~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~ 210 (321)
T TIGR01306 136 PDSFVIAGNV-----GTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTH 210 (321)
T ss_pred CCCEEEEecC-----CCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcH
Confidence 6663333221 15788889999999999987 221 111 1111234568899999999999999999999
Q ss_pred HHHHHHHHhhh---hhcccc
Q psy4398 241 VDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 241 ~~~~~~l~~~v---~vGral 257 (306)
.|+.+++..|+ ++||.+
T Consensus 211 ~Di~KALa~GAd~Vmig~~~ 230 (321)
T TIGR01306 211 GDIAKSIRFGASMVMIGSLF 230 (321)
T ss_pred HHHHHHHHcCCCEEeechhh
Confidence 99999998864 888876
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-12 Score=111.23 Aligned_cols=140 Identities=19% Similarity=0.240 Sum_probs=109.9
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec----cCCC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR----VFHN 181 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir----~g~~ 181 (306)
+|+ +....+..++.+..+.|++.|-+ |+.+.++++.+.++++.+.+.+.+++++|.+ .+|.
T Consensus 77 v~~-~GGI~~~ed~~~~~~~Ga~~vil--------------g~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~ 141 (233)
T PRK00748 77 VQV-GGGIRSLETVEALLDAGVSRVII--------------GTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWL 141 (233)
T ss_pred EEE-cCCcCCHHHHHHHHHcCCCEEEE--------------CchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCe
Confidence 344 33334445554555569999865 4566778999999999987766666666522 1342
Q ss_pred ---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhc
Q psy4398 182 ---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFL 254 (306)
Q Consensus 182 ---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vG 254 (306)
..+..++++.+++.|++.+.+|++++++.+.+ ++++.++++++.+++|+|++|||.|.+|++++++.+ +++|
T Consensus 142 ~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg 220 (233)
T PRK00748 142 ETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVG 220 (233)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEE
Confidence 23468999999999999999999999999988 599999999999999999999999999999999864 5999
Q ss_pred cccCCCC
Q psy4398 255 RNHYPVE 261 (306)
Q Consensus 255 rall~~p 261 (306)
|+++.+-
T Consensus 221 ~a~~~~~ 227 (233)
T PRK00748 221 RALYEGK 227 (233)
T ss_pred HHHHcCC
Confidence 9998763
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=110.40 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=112.6
Q ss_pred HHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcc----c-------ccEEEEeccCCCh--
Q psy4398 117 LEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNL----S-------IPVSCKIRVFHNE-- 182 (306)
Q Consensus 117 ~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~----~-------~pv~vKir~g~~~-- 182 (306)
.++.+.+..|++.|.++ +.+..+|+.+.++.+.+. +.+ + .|+.||+|.+++.
T Consensus 87 ~~~~~~l~~Ga~~Viig--------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~ 152 (253)
T PRK02083 87 EDARRLLRAGADKVSIN--------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTG 152 (253)
T ss_pred HHHHHHHHcCCCEEEEC--------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecC
Confidence 33334444699999884 455678999999988873 222 2 3567888865432
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHY 258 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall 258 (306)
.+..++++.+++.|++.+.+|+..+.+...++ +|++++++++.+++|||++|||.|.+|+.++++. ++++|++++
T Consensus 153 ~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~ 231 (253)
T PRK02083 153 LDAVEWAKEVEELGAGEILLTSMDRDGTKNGY-DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFH 231 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCc-CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHH
Confidence 24788999999999999999987766666665 8999999999999999999999999999998874 459999998
Q ss_pred CCCCchHHHHHHHHHhcCCC
Q psy4398 259 PVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 259 ~~p~~~~~~l~~~~~~~g~~ 278 (306)
.+- ....++.++|++.|++
T Consensus 232 ~~~-~~~~~~~~~~~~~~~~ 250 (253)
T PRK02083 232 FGE-ITIGELKAYLAEQGIP 250 (253)
T ss_pred cCC-CCHHHHHHHHHHCCCc
Confidence 653 3334778888888865
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=110.08 Aligned_cols=141 Identities=21% Similarity=0.270 Sum_probs=109.7
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEEecc----CC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCKIRV----FH 180 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~----g~ 180 (306)
+|+.|. ..+..++.+.++.|+|.|-+ |.....+|+++.++.+.+.+ .+-.++.+|.+. +|
T Consensus 76 v~~~Gg-I~~~e~~~~~~~~Gad~vvi--------------gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~ 140 (234)
T cd04732 76 VQVGGG-IRSLEDIERLLDLGVSRVII--------------GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGW 140 (234)
T ss_pred EEEeCC-cCCHHHHHHHHHcCCCEEEE--------------CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCC
Confidence 555443 44455555556679999876 34556789999999888754 444455554321 22
Q ss_pred ---ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhc
Q psy4398 181 ---NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFL 254 (306)
Q Consensus 181 ---~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vG 254 (306)
...+..++++.+++.|++.+++|++++.+.+.+ .+++.++++++.+++||+++|||++.+++.++++.+ +++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 141 LETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred eeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 233578999999999999999999988888877 589999999999999999999999999999999874 5999
Q ss_pred cccCCCCC
Q psy4398 255 RNHYPVEK 262 (306)
Q Consensus 255 rall~~p~ 262 (306)
|+++.++.
T Consensus 220 ~~~~~~~~ 227 (234)
T cd04732 220 KALYEGKI 227 (234)
T ss_pred HHHHcCCC
Confidence 99999884
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.9e-12 Score=110.93 Aligned_cols=143 Identities=19% Similarity=0.213 Sum_probs=107.9
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccEEEE---ec-cCC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCK---IR-VFH 180 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vK---ir-~g~ 180 (306)
+|+ +.+..+..++...++.|+|.|-+ |+..+++++.+.++.+.+. +.+-+.+++| +. .||
T Consensus 79 l~v-~GGi~~~~~~~~~~~~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~ 143 (241)
T PRK13585 79 VQL-GGGIRSAEDAASLLDLGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGW 143 (241)
T ss_pred EEE-cCCcCCHHHHHHHHHcCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCC
Confidence 444 44444455555555679999877 4456678999888888873 3433345543 11 144
Q ss_pred Ch---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhc
Q psy4398 181 NE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFL 254 (306)
Q Consensus 181 ~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vG 254 (306)
+. .+..++++.+++.|++.|++|+++.++...+ .+++.++++++.+++||+++|||+|.+++.++.+. ++++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g-~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 144 TEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEG-VNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 32 2578999999999999999999887776655 59999999999999999999999999999998775 45999
Q ss_pred cccCCCCCch
Q psy4398 255 RNHYPVEKLP 264 (306)
Q Consensus 255 rall~~p~~~ 264 (306)
++++.+|...
T Consensus 223 sa~~~~~~~~ 232 (241)
T PRK13585 223 SALYKGKFTL 232 (241)
T ss_pred HHHhcCCcCH
Confidence 9999998543
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-11 Score=111.08 Aligned_cols=229 Identities=14% Similarity=0.124 Sum_probs=149.4
Q ss_pred ccccccccccCCceEEccCCC---CCC---HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR---MNT---LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~---~t~---~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++|||.. ... ......+.+.|..++++-..+. ++. .+
T Consensus 54 ~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~-s~e----------------------~v 110 (344)
T cd02922 54 TSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASC-SLE----------------------EI 110 (344)
T ss_pred CceEECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccC-CHH----------------------HH
Confidence 788899999999999999993 222 2244445667766666543221 100 00
Q ss_pred eecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc----CCc-------------------cc
Q psy4398 94 FRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT----GGM-------------------GA 148 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~----~~~-------------------G~ 148 (306)
.+... .+.|...||. ..+.+...+..+++++ ||+++-+++..|..-.|. .++ +.
T Consensus 111 ~~~~~-~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 189 (344)
T cd02922 111 VDARP-PDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAG 189 (344)
T ss_pred HHhcC-CCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHH
Confidence 11111 1357889986 5677777888888875 999999998887321100 000 00
Q ss_pred cc---cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHh
Q psy4398 149 AL---LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQ 225 (306)
Q Consensus 149 ~l---~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~ 225 (306)
.. ..++....+.++.+++.++.||.+|-- . ..+-++.+.++|+|+|++++.........+..++.+.++++
T Consensus 190 ~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv---~---~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~ 263 (344)
T cd02922 190 RAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGV---Q---TVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRK 263 (344)
T ss_pred HHHhhccCCCCCHHHHHHHHHhcCCcEEEEcC---C---CHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHH
Confidence 00 112334567789999999999999933 2 36777888999999999975321111111223445555555
Q ss_pred ---hC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC---------chH---HHHHHHHHhcCCC
Q psy4398 226 ---HL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK---------LPK---TILYAHCKYKRFE 278 (306)
Q Consensus 226 ---~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~---------~~~---~~l~~~~~~~g~~ 278 (306)
.+ ++|||+.|||++..|+-+++..|+ ++||+++..+. ... .+|+.+|...|.+
T Consensus 264 ~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 264 HCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred HHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33 599999999999999999998764 99999988763 222 1888999998843
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-11 Score=109.87 Aligned_cols=201 Identities=17% Similarity=0.218 Sum_probs=120.8
Q ss_pred cccCCceEEccCCCCCCHHHHHHHHHc-CCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceE
Q psy4398 27 INYSNKIILAPMVRMNTLPFRLLALDY-GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKII 105 (306)
Q Consensus 27 l~l~n~i~lAPm~~~t~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i 105 (306)
+.++.||+.|||.+.++..+...+.++ |.|.+-+...+++.+....+....+ .+.|+.
T Consensus 8 lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~---------------------t~~pfg 66 (330)
T PF03060_consen 8 LGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRAL---------------------TDKPFG 66 (330)
T ss_dssp HT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH----------------------SS-EE
T ss_pred hCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhh---------------------cccccc
Confidence 567999999999999999998876565 4688887666554433222211111 134888
Q ss_pred EEecCCC--HHHH--------HHH-HHH---------------HhcCCCEEEEccCCCccccccCCccccccCChHHHHH
Q psy4398 106 LQIGTAD--PERA--------LEA-AKK---------------VEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACN 159 (306)
Q Consensus 106 vql~g~~--~~~~--------~~a-a~~---------------~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~e 159 (306)
+++.... +... ... ... ++.+.+.|.+.+|.|. .+
T Consensus 67 vnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~-------------------~~ 127 (330)
T PF03060_consen 67 VNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPP-------------------PE 127 (330)
T ss_dssp EEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC--------------------HH
T ss_pred ccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccch-------------------HH
Confidence 8886432 2221 001 111 1224558888888775 23
Q ss_pred HHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-C--CcHHHHHHHHhhCCCcEEEecC
Q psy4398 160 ILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH-R--NRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 160 iv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p--~~~~~v~~i~~~~~ipvia~GG 236 (306)
+++.+++ .++.++..+. ..+.|+.+.+.|+|.|++.|....+ +.+ + ..+.++.++++.+++|||+.||
T Consensus 128 ~i~~l~~-~gi~v~~~v~-------s~~~A~~a~~~G~D~iv~qG~eAGG-H~g~~~~~~~~L~~~v~~~~~iPViaAGG 198 (330)
T PF03060_consen 128 VIERLHA-AGIKVIPQVT-------SVREARKAAKAGADAIVAQGPEAGG-HRGFEVGSTFSLLPQVRDAVDIPVIAAGG 198 (330)
T ss_dssp HHHHHHH-TT-EEEEEES-------SHHHHHHHHHTT-SEEEEE-TTSSE-E---SSG-HHHHHHHHHHH-SS-EEEESS
T ss_pred HHHHHHH-cCCccccccC-------CHHHHHHhhhcCCCEEEEeccccCC-CCCccccceeeHHHHHhhhcCCcEEEecC
Confidence 4566655 4788888888 4677888999999999999875432 222 2 2578889999999999999999
Q ss_pred CCCHHHHHHHHHh---hhhhccccCCCCCch-HHHHHHHHHhcC
Q psy4398 237 SKEIVDYGGVFSL---NCAFLRNHYPVEKLP-KTILYAHCKYKR 276 (306)
Q Consensus 237 I~s~~~~~~~l~~---~v~vGrall~~p~~~-~~~l~~~~~~~g 276 (306)
|.|.+++..++.. +|++||.++.=++.. ....++.+.+.+
T Consensus 199 I~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~~l~~a~ 242 (330)
T PF03060_consen 199 IADGRGIAAALALGADGVQMGTRFLATEESGASDAYKQALVDAT 242 (330)
T ss_dssp --SHHHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHHHHHHGG
T ss_pred cCCHHHHHHHHHcCCCEeecCCeEEecccccChHHHHHHHHhCC
Confidence 9999999999986 459999998654222 224444444433
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-11 Score=102.75 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc-C----C---
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV-F----H--- 180 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~-g----~--- 180 (306)
|....+..++.+.+..|+|-|.|| ++...+|+++.++.+++-.++ .+.++.|-+. | |
T Consensus 80 GGGI~s~eD~~~ll~aGADKVSIN--------------saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~ 145 (256)
T COG0107 80 GGGIRSVEDARKLLRAGADKVSIN--------------SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVF 145 (256)
T ss_pred cCCcCCHHHHHHHHHcCCCeeeeC--------------hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEE
Confidence 666666677778888999999998 334578999999999996554 6778888752 1 1
Q ss_pred -------ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh-h-
Q psy4398 181 -------NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN-C- 251 (306)
Q Consensus 181 -------~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~-v- 251 (306)
+.-++.++++.+++.|+..|.++.+.+++...+ +++++++.+++.+++||||+||..++++..+++..+ +
T Consensus 146 ~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~G-yDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~ad 224 (256)
T COG0107 146 THGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAG-YDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKAD 224 (256)
T ss_pred ecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccC-cCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCcc
Confidence 113589999999999999999999998887776 699999999999999999999999999999999765 3
Q ss_pred -hhccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 252 -AFLRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 252 -~vGrall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
+++-.++.--...-.++++||.++|+++
T Consensus 225 AaLAAsiFH~~~~~i~evK~yL~~~gi~V 253 (256)
T COG0107 225 AALAASIFHFGEITIGEVKEYLAEQGIEV 253 (256)
T ss_pred HHHhhhhhhcCcccHHHHHHHHHHcCCCc
Confidence 5555555533444459999999999873
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.6e-11 Score=106.13 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=122.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCC----hHHHHHHHHHH-HhcccccEEEEe
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST----PDIACNILTTL-ISNLSIPVSCKI 176 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~----~~~~~eiv~~v-~~~~~~pv~vKi 176 (306)
.++-+|++|.-. . .++.+.+..|++.|-|| +...++ |+++.++++.+ .+.+-+.+++|.
T Consensus 82 ~~~~vqvGGGIR-~-e~i~~~l~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~ 145 (262)
T PLN02446 82 YPGGLQVGGGVN-S-ENAMSYLDAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRK 145 (262)
T ss_pred CCCCEEEeCCcc-H-HHHHHHHHcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEe
Confidence 357799987665 3 55556667899999995 334455 99999999999 677777788873
Q ss_pred cc--------CCChH---HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 177 RV--------FHNEA---DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 177 r~--------g~~~~---~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
.. ||... +..+++..+++.|++.+.++...+++...+| ++++++++++.+++|||++|||.|++|+.+
T Consensus 146 ~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~-d~el~~~l~~~~~ipVIASGGv~sleDi~~ 224 (262)
T PLN02446 146 KDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGI-DEELVALLGEHSPIPVTYAGGVRSLDDLER 224 (262)
T ss_pred cCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCC-CHHHHHHHHhhCCCCEEEECCCCCHHHHHH
Confidence 21 56432 4788889999999999999999999999886 999999999999999999999999999999
Q ss_pred HHHh-----hhhhcccc--CCCCCchHHHHHHHHHh
Q psy4398 246 VFSL-----NCAFLRNH--YPVEKLPKTILYAHCKY 274 (306)
Q Consensus 246 ~l~~-----~v~vGral--l~~p~~~~~~l~~~~~~ 274 (306)
+.+. ++.+|+|| |.+-. .-.++-+|-++
T Consensus 225 L~~~g~g~~gvIvGkAl~~y~g~~-~l~ea~~~~~~ 259 (262)
T PLN02446 225 VKVAGGGRVDVTVGSALDIFGGNL-PYDDVVAWHKQ 259 (262)
T ss_pred HHHcCCCCEEEEEEeeHHHhCCCc-cHHHHHHHHhh
Confidence 8875 45999999 77653 22244556443
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=107.13 Aligned_cols=139 Identities=20% Similarity=0.211 Sum_probs=104.6
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC-
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF- 179 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g- 179 (306)
+.|+ |+ ++++..+.++.+..+.|++.|.++ +.+.++++++.++++.+.+.. ++++++++.+
T Consensus 74 ~~pv--~~-~ggi~~~~d~~~~~~~G~~~vilg--------------~~~l~~~~~~~~~~~~~~~~~-i~vsld~~~~~ 135 (232)
T TIGR03572 74 FMPL--TV-GGGIRSLEDAKKLLSLGADKVSIN--------------TAALENPDLIEEAARRFGSQC-VVVSIDVKKEL 135 (232)
T ss_pred CCCE--EE-ECCCCCHHHHHHHHHcCCCEEEEC--------------hhHhcCHHHHHHHHHHcCCce-EEEEEEeccCC
Confidence 3454 44 444455555556556699999885 456788999999998874432 3455554431
Q ss_pred -----------CC---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 180 -----------HN---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 180 -----------~~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
|+ ..+..++++.+++.|+|.+++|+++..+...++ ++++++++++.+++||+++|||+|++++++
T Consensus 136 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~-~~~~~~~i~~~~~ipvia~GGi~s~~di~~ 214 (232)
T TIGR03572 136 DGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGY-DLELIKTVSDAVSIPVIALGGAGSLDDLVE 214 (232)
T ss_pred CCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCC-CHHHHHHHHhhCCCCEEEECCCCCHHHHHH
Confidence 21 234789999999999999999998887777664 899999999999999999999999999999
Q ss_pred HHH-h---hhhhccccC
Q psy4398 246 VFS-L---NCAFLRNHY 258 (306)
Q Consensus 246 ~l~-~---~v~vGrall 258 (306)
+++ . ++++|+|+.
T Consensus 215 ~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 215 VALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHcCCCEEEEehhhh
Confidence 554 3 569999874
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-11 Score=105.77 Aligned_cols=140 Identities=21% Similarity=0.284 Sum_probs=107.0
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccEEEEec----cCC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCKIR----VFH 180 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vKir----~g~ 180 (306)
+|+. .......++.+..+.|+|.|-+ |+...++++.+.++++++. +.+-.++.+|.+ .||
T Consensus 75 i~~g-gGI~~~ed~~~~~~~Ga~~vvl--------------gs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~ 139 (230)
T TIGR00007 75 VQVG-GGIRSLEDVEKLLDLGVDRVII--------------GTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGW 139 (230)
T ss_pred EEEe-CCcCCHHHHHHHHHcCCCEEEE--------------ChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCC
Confidence 4553 3444445555555679999866 3455678899999999985 444444554422 134
Q ss_pred Ch---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhc
Q psy4398 181 NE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFL 254 (306)
Q Consensus 181 ~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vG 254 (306)
.. .+..++++.+++.|++.+++|++++.+...+ .++++++++++.+++|++++|||+|.+|++++++.| +++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g-~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 140 LEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG-PNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred cccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 32 3468899999999999999999998887776 489999999999999999999999999999988864 5999
Q ss_pred cccCCCC
Q psy4398 255 RNHYPVE 261 (306)
Q Consensus 255 rall~~p 261 (306)
|+++.+-
T Consensus 219 ~a~~~~~ 225 (230)
T TIGR00007 219 KALYEGK 225 (230)
T ss_pred HHHHcCC
Confidence 9998764
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=108.01 Aligned_cols=228 Identities=11% Similarity=0.080 Sum_probs=148.9
Q ss_pred ccccccccccCCceEEccCCCC------CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRM------NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~------t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+..- .+......+.+.|.-.+.+-..+ .++.. +
T Consensus 70 ~~t~llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss-~slEe----------------------v 126 (367)
T TIGR02708 70 TEIEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYST-ADLPE----------------------I 126 (367)
T ss_pred CceeeCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeeccccc-CCHHH----------------------H
Confidence 7888999999999999998831 12334555667776666654321 11110 1
Q ss_pred eecCCCCCCceEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc---------------------CCccccc
Q psy4398 94 FRTCPREKNKIILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT---------------------GGMGAAL 150 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~---------------------~~~G~~l 150 (306)
.... .+.+...||.- .+.+-..+..+++++ ||.+|-|..-+|..-.|. .+.+..+
T Consensus 127 ~~~~--~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 204 (367)
T TIGR02708 127 SEAL--NGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSM 204 (367)
T ss_pred Hhhc--CCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccch
Confidence 1110 13478899875 455555777788875 999999977665321110 0000000
Q ss_pred c-----CChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHh
Q psy4398 151 L-----STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQ 225 (306)
Q Consensus 151 ~-----~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~ 225 (306)
. .++.+.-+-++.+++.++.||.||= .. ..+.++.+.++|+|+|.|++-...+.+..|..|+.+.++++
T Consensus 205 ~~~~~~~~~~~~w~~i~~l~~~~~~PvivKG---v~---~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~ 278 (367)
T TIGR02708 205 DNVYKSAKQKLSPRDIEEIAGYSGLPVYVKG---PQ---CPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAE 278 (367)
T ss_pred hhhccccCCCCCHHHHHHHHHhcCCCEEEeC---CC---CHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHH
Confidence 0 0122223567888888999999992 22 36788888999999998754433445566778999999999
Q ss_pred hC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC-----CCchH-------HHHHHHHHhcCCC
Q psy4398 226 HL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV-----EKLPK-------TILYAHCKYKRFE 278 (306)
Q Consensus 226 ~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~-----p~~~~-------~~l~~~~~~~g~~ 278 (306)
++ ++|||++|||++..|+.+++..|+ ++||+++.. ..-.. .+|+.-|.-.|.+
T Consensus 279 av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~ 348 (367)
T TIGR02708 279 AVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQ 348 (367)
T ss_pred HhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88 499999999999999999998754 999987643 11111 1666667777733
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-10 Score=104.10 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=117.8
Q ss_pred CCceEEccCCCCCC-HHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEE
Q psy4398 30 SNKIILAPMVRMNT-LPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQ 107 (306)
Q Consensus 30 ~n~i~lAPm~~~t~-~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivq 107 (306)
+.||+.+||.++++ ..+...+.++| .|++-....+++.+....+....+ ..+.|+.++
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l--------------------~tdkPfGVn 61 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEETAEL--------------------LGDKPWGVG 61 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHh--------------------ccCCCeEEE
Confidence 67999999999998 67777766655 576665555444332211111110 025699999
Q ss_pred ecCCCH-HHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHH
Q psy4398 108 IGTADP-ERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT 185 (306)
Q Consensus 108 l~g~~~-~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~ 185 (306)
|....+ +.+.+..+.+ +++.+.|.+..+.|. . ++.+++ .++.++..+. +
T Consensus 62 l~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~-----------------~----~~~lk~-~Gi~v~~~v~-------s 112 (320)
T cd04743 62 ILGFVDTELRAAQLAVVRAIKPTFALIAGGRPD-----------------Q----ARALEA-IGISTYLHVP-------S 112 (320)
T ss_pred EeccCCCcchHHHHHHHHhcCCcEEEEcCCChH-----------------H----HHHHHH-CCCEEEEEeC-------C
Confidence 854321 1233334433 458899988765543 1 245554 4888887777 4
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC----------CCcEEEecCCCCHHHHHHHHHh-----
Q psy4398 186 IALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL----------KIPVIANGGSKEIVDYGGVFSL----- 249 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~----------~ipvia~GGI~s~~~~~~~l~~----- 249 (306)
.+.++.+++.|+|.|++.|....+. .++ ..+.++.++.+.+ ++|||+.|||.|...+..++..
T Consensus 113 ~~~A~~a~~~GaD~vVaqG~EAGGH-~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~ 191 (320)
T cd04743 113 PGLLKQFLENGARKFIFEGRECGGH-VGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLA 191 (320)
T ss_pred HHHHHHHHHcCCCEEEEecCcCcCC-CCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCccc
Confidence 6778999999999999998765443 232 1233444444333 7999999999999887666643
Q ss_pred ------hhhhccccCCCC
Q psy4398 250 ------NCAFLRNHYPVE 261 (306)
Q Consensus 250 ------~v~vGrall~~p 261 (306)
+++||+.++.=+
T Consensus 192 ~~Ga~~GV~mGTrFl~t~ 209 (320)
T cd04743 192 ERGAKVGVLMGTAYLFTE 209 (320)
T ss_pred ccccccEEEEccHHhcch
Confidence 679999988644
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-09 Score=102.12 Aligned_cols=216 Identities=13% Similarity=0.086 Sum_probs=132.5
Q ss_pred ccccc-cccccCCceEEccCCCCCCHHHHHHHHH-cCCCEEEecceechhhhhhhhhhh------cccccccccCC----
Q psy4398 20 ANANQ-ANINYSNKIILAPMVRMNTLPFRLLALD-YGADLVYSEELVDHKLVKTERKVN------DLLNTIDFVDP---- 87 (306)
Q Consensus 20 ~~~~~-~~l~l~n~i~lAPm~~~t~~~~r~~~~~-~G~g~~~te~~~~~~~~~~~~~~~------~~l~~~~~~~~---- 87 (306)
+++++ ..+.++-||+.|||.++++..+.....+ +|.|.+- ...+++.+....+... ++..+.+...+
T Consensus 31 l~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~-~~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~ 109 (404)
T PRK06843 31 LKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIH-KNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEI 109 (404)
T ss_pred ccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEec-CCCCHHHHHHHHHHHHhhcCCCceeecccccccchhh
Confidence 55566 4788999999999999999988876545 4567665 4455554332211110 01000000000
Q ss_pred -----CC-----------CceeeecCCCCCCc--eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCcccc
Q psy4398 88 -----LD-----------GSVVFRTCPREKNK--IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149 (306)
Q Consensus 88 -----~~-----------~~~~~~~~~~~~~p--~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~ 149 (306)
+. .+.+-..+.+.... +.+.+ +.+++.+.++...+++|+|.|-|..+.++
T Consensus 110 ~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aav-g~~~~~~~~v~~lv~aGvDvI~iD~a~g~----------- 177 (404)
T PRK06843 110 FTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAV-SIDIDTIERVEELVKAHVDILVIDSAHGH----------- 177 (404)
T ss_pred eeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEE-eCCHHHHHHHHHHHhcCCCEEEEECCCCC-----------
Confidence 00 00000111111112 23333 44567777777777889999999766533
Q ss_pred ccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC-------CCCCCCcHHHH-
Q psy4398 150 LLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE-------RPRHRNRIEMI- 220 (306)
Q Consensus 150 l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~-------~~~~p~~~~~v- 220 (306)
.+.+.++++.+++.+ +.+|.++-= . +.+-++.+.++|+|+|.+ +.+... ...+.+.+..+
T Consensus 178 ----~~~~~~~v~~ik~~~p~~~vi~g~V--~----T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~ 246 (404)
T PRK06843 178 ----STRIIELVKKIKTKYPNLDLIAGNI--V----TKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAIC 246 (404)
T ss_pred ----ChhHHHHHHHHHhhCCCCcEEEEec--C----CHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHH
Confidence 355678899999887 567777544 1 467777888899999986 332211 11233455544
Q ss_pred --HHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 221 --RTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 221 --~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.++.+.+++|||+-|||++..|+.+++..|+ ++|+++-.
T Consensus 247 ~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~ag 290 (404)
T PRK06843 247 DVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAG 290 (404)
T ss_pred HHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeee
Confidence 5555556899999999999999999999864 99999865
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.4e-10 Score=103.50 Aligned_cols=227 Identities=14% Similarity=0.082 Sum_probs=148.3
Q ss_pred ccccccccccCCceEEccCCC--C----CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR--M----NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~--~----t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.. . .+.+....+.+.|.-.+.+-+.+ .++.. +
T Consensus 62 ~~t~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~-~slEe----------------------v 118 (364)
T PLN02535 62 MSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMAS-CTVEE----------------------V 118 (364)
T ss_pred CceEECCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCccc-CCHHH----------------------H
Confidence 888999999999999999882 1 22334445566676555554321 11110 0
Q ss_pred eecCCCCCCceEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCccccc-cCCc-c----------------------
Q psy4398 94 FRTCPREKNKIILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSL-TGGM-G---------------------- 147 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~-~~~~-G---------------------- 147 (306)
.. ..+.+...||.- .|.+...+..+++++ ||.+|-+..-+|..-.| +|.. |
T Consensus 119 a~---~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 195 (364)
T PLN02535 119 AS---SCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKG 195 (364)
T ss_pred Hh---cCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCcccc
Confidence 10 113478999975 556777777888875 99999997776642111 1100 0
Q ss_pred cc----c--cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHH
Q psy4398 148 AA----L--LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIR 221 (306)
Q Consensus 148 ~~----l--~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~ 221 (306)
.. . .-++.+.-+-++.+++.++.||.+|-- .+ .+-++.+.++|+|+|.+++....+....+..++.+.
T Consensus 196 ~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV--~~----~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ 269 (364)
T PLN02535 196 SGLEAFASETFDASLSWKDIEWLRSITNLPILIKGV--LT----REDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLE 269 (364)
T ss_pred ccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecC--CC----HHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHH
Confidence 00 0 002222336678888888999999943 22 234788889999999997532211122345678889
Q ss_pred HHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCC---------chH---HHHHHHHHhcCCC
Q psy4398 222 TLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK---------LPK---TILYAHCKYKRFE 278 (306)
Q Consensus 222 ~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~---------~~~---~~l~~~~~~~g~~ 278 (306)
++++++ ++|||+.|||++..|+-+++..| |++||+++.... ..+ .+++..|.-.|.+
T Consensus 270 ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~~gv~~~l~~l~~el~~~m~l~G~~ 343 (364)
T PLN02535 270 EVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCP 343 (364)
T ss_pred HHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 998877 69999999999999999999876 499999987642 111 2777778888844
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-10 Score=101.05 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=112.9
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe-----c
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI-----R 177 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-----r 177 (306)
++-+|+.|. .....++...+..|++.|-++ +...++|+++.++.+.+.+.+-+.+++|. .
T Consensus 74 ~~~v~vgGG-Irs~e~~~~~l~~Ga~~vvig--------------T~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~ 138 (243)
T TIGR01919 74 VVVEELSGG-RRDDSSLRAALTGGRARVNGG--------------TAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHT 138 (243)
T ss_pred CCCEEEcCC-CCCHHHHHHHHHcCCCEEEEC--------------chhhCCHHHHHHHHHHccccEEEEEEEecCCceEE
Confidence 456788654 223444445566799998774 45567999999999988666666777762 1
Q ss_pred c---CCCh--HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH----
Q psy4398 178 V---FHNE--ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS---- 248 (306)
Q Consensus 178 ~---g~~~--~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~---- 248 (306)
. ||.. .+..++++.+++.|+..+.++...+++...+| ++++++++++.+++|||++|||+|.+|.+++-+
T Consensus 139 v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~-d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~ 217 (243)
T TIGR01919 139 LGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGP-NELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEG 217 (243)
T ss_pred EECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCc-CHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccC
Confidence 1 4543 24789999999999999999999999999986 999999999999999999999999999998742
Q ss_pred --hhhhhccccCCCC
Q psy4398 249 --LNCAFLRNHYPVE 261 (306)
Q Consensus 249 --~~v~vGrall~~p 261 (306)
.++.+|+|+|.+-
T Consensus 218 Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 218 GVSVAIGGKLLYARF 232 (243)
T ss_pred CeeEEEEhHHHHcCC
Confidence 2569999999876
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.2e-10 Score=99.27 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=108.6
Q ss_pred EEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec----cCC
Q psy4398 105 ILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR----VFH 180 (306)
Q Consensus 105 ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir----~g~ 180 (306)
-+|+.|. .....++.+.+..|++.|-|| +...++|+++.++ ..+.+.+-+.+++|-. -||
T Consensus 75 ~v~vGGG-Irs~e~~~~~l~~Ga~rvvig--------------T~a~~~p~~l~~~-~~~~~~ivvslD~k~g~v~~~gw 138 (241)
T PRK14114 75 HIQIGGG-IRSLDYAEKLRKLGYRRQIVS--------------SKVLEDPSFLKFL-KEIDVEPVFSLDTRGGKVAFKGW 138 (241)
T ss_pred cEEEecC-CCCHHHHHHHHHCCCCEEEEC--------------chhhCCHHHHHHH-HHhCCCEEEEEEccCCEEeeCCC
Confidence 3688553 334455556667799998774 4456789999999 4554444455555422 145
Q ss_pred Ch---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--------
Q psy4398 181 NE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL-------- 249 (306)
Q Consensus 181 ~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~-------- 249 (306)
.. -+..++++.+++.|+..+.++...+++...+| ++++++++++.+++|||++|||+|.+|..++.+.
T Consensus 139 ~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~-d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v 217 (241)
T PRK14114 139 LAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEH-DFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLL 217 (241)
T ss_pred eecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCc-CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcE
Confidence 32 24789999999999999999999999999886 9999999999999999999999999999988774
Q ss_pred -hhhhccccCCCC
Q psy4398 250 -NCAFLRNHYPVE 261 (306)
Q Consensus 250 -~v~vGrall~~p 261 (306)
++.+|+|+|.+-
T Consensus 218 ~gvivg~Al~~g~ 230 (241)
T PRK14114 218 KGVIVGRAFLEGI 230 (241)
T ss_pred EEEEEehHHHCCC
Confidence 359999999876
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-10 Score=101.03 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=111.5
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEEec-c--
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCKIR-V-- 178 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir-~-- 178 (306)
++-+|+.|. .....++.+.++.|++.|-++ +...++|+++.++.+.+.+ .+-+.+++|-. .
T Consensus 73 ~~~i~vgGG-Irs~ed~~~ll~~Ga~~Vvig--------------t~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~ 137 (229)
T PF00977_consen 73 GIPIQVGGG-IRSIEDAERLLDAGADRVVIG--------------TEALEDPELLEELAERYGSQRIVVSLDARDGYKVA 137 (229)
T ss_dssp SSEEEEESS-E-SHHHHHHHHHTT-SEEEES--------------HHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEE
T ss_pred CccEEEeCc-cCcHHHHHHHHHhCCCEEEeC--------------hHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEE
Confidence 366788654 335566667777899998884 5567899999999999965 66677777765 1
Q ss_pred --CCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---
Q psy4398 179 --FHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN--- 250 (306)
Q Consensus 179 --g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~--- 250 (306)
||.. -+..++++.+++.|+..+.+++..+++...+| ++++++++++.+++|+|++|||.+.+|.+.+.+.+
T Consensus 138 ~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~-d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~g 216 (229)
T PF00977_consen 138 TNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGP-DLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDG 216 (229)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECE
T ss_pred ecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCC-CHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcE
Confidence 5543 35899999999999999999999999999986 89999999999999999999999999999999875
Q ss_pred hhhccccCCC
Q psy4398 251 CAFLRNHYPV 260 (306)
Q Consensus 251 v~vGrall~~ 260 (306)
+.+|+|+|.+
T Consensus 217 vivg~al~~g 226 (229)
T PF00977_consen 217 VIVGSALHEG 226 (229)
T ss_dssp EEESHHHHTT
T ss_pred EEEehHhhCC
Confidence 4999999865
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=97.53 Aligned_cols=139 Identities=16% Similarity=0.131 Sum_probs=110.5
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCC----hHHHHHHHHHH-HhcccccEEEEe-
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST----PDIACNILTTL-ISNLSIPVSCKI- 176 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~----~~~~~eiv~~v-~~~~~~pv~vKi- 176 (306)
.+-+|++|.-. . .++.+.++.|++.|-|+ +.+.++ ++++.++.+.+ .+.+-+.+++|.
T Consensus 76 ~~~v~vGGGIr-~-e~v~~~l~aGa~rVvIG--------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~ 139 (253)
T TIGR02129 76 PGGLQVGGGIN-D-TNAQEWLDEGASHVIVT--------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKT 139 (253)
T ss_pred CCCEEEeCCcC-H-HHHHHHHHcCCCEEEEC--------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEc
Confidence 35678866543 3 66666778899999995 333343 88999999999 677777788872
Q ss_pred --c---c---CCChH---HHH-HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q psy4398 177 --R---V---FHNEA---DTI-ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYG 244 (306)
Q Consensus 177 --r---~---g~~~~---~~~-~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~ 244 (306)
. + ||... +.. ++++.+++. +..|.++...+++...+| ++++++++++.+++|||++|||.|++|..
T Consensus 140 ~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G~-dlel~~~l~~~~~ipVIASGGv~s~eDi~ 217 (253)
T TIGR02129 140 QDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLCKGI-DEELVSKLGEWSPIPITYAGGAKSIDDLD 217 (253)
T ss_pred CCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCccccC-CHHHHHHHHhhCCCCEEEECCCCCHHHHH
Confidence 1 1 55432 356 899999999 999999999999999986 99999999999999999999999999999
Q ss_pred HHHH-----hhhhhccccCC
Q psy4398 245 GVFS-----LNCAFLRNHYP 259 (306)
Q Consensus 245 ~~l~-----~~v~vGrall~ 259 (306)
++.+ .++.+|+++|.
T Consensus 218 ~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 218 LVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHhcCCCCcEEeeehHHH
Confidence 8833 25699999874
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=97.31 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=111.0
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec---c-CCC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR---V-FHN 181 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir---~-g~~ 181 (306)
+|++| +...+.++.+.++.|++.|-++ +...++|+++.++.+.+.+.+-+.+++|-. . ||.
T Consensus 79 i~vGG-GIrs~e~v~~~l~~Ga~kvvig--------------t~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~ 143 (234)
T PRK13587 79 IEVGG-GIRTKSQIMDYFAAGINYCIVG--------------TKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWE 143 (234)
T ss_pred EEEcC-CcCCHHHHHHHHHCCCCEEEEC--------------chHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCc
Confidence 77744 3445566666677899998774 455689999999999886655556666532 1 453
Q ss_pred h---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhcc
Q psy4398 182 E---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLR 255 (306)
Q Consensus 182 ~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGr 255 (306)
. -+..++++.+++.|+..+.++...+++...++ ++++++++.+.+++|||+.|||+|.+|+.++++.| +.+|+
T Consensus 144 ~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~-~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~ 222 (234)
T PRK13587 144 EDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGP-NFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGK 222 (234)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCcc-CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhH
Confidence 2 23689999999999999999999999888886 99999999999999999999999999999999865 49999
Q ss_pred ccCC
Q psy4398 256 NHYP 259 (306)
Q Consensus 256 all~ 259 (306)
+++.
T Consensus 223 a~~~ 226 (234)
T PRK13587 223 AAHQ 226 (234)
T ss_pred HHHh
Confidence 9886
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.9e-09 Score=98.47 Aligned_cols=203 Identities=17% Similarity=0.211 Sum_probs=124.8
Q ss_pred ccccccccCCceEEccCCCCCCHHHHHHHHHc-CCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCC
Q psy4398 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDY-GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPRE 100 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (306)
..+..+.++.||+.+||..+|+..+.....+. |.|.+-.-....+......+....... .|.. .....+ .
T Consensus 6 ~~~~~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~~~~-----~p~~---~~~f~~-~ 76 (336)
T COG2070 6 RFILLLGIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRALTD-----KPFV---ANNFGS-A 76 (336)
T ss_pred hhhcccCccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHHHHHHhcC-----Ccch---hccccc-c
Confidence 34567789999999999999999998876554 467332222222111111111111100 0000 000000 0
Q ss_pred CCceEEEecCCCHHHHHHHHHH-Hhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 101 KNKIILQIGTADPERALEAAKK-VEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~-~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
..|+-+++.....+.+.+.+.. ++. +...+...++-|. .++++.+++ .+..+..++.
T Consensus 77 ~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~-------------------~~~i~~~~~-~g~~v~~~v~- 135 (336)
T COG2070 77 PAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPP-------------------AEFVARLKA-AGIKVIHSVI- 135 (336)
T ss_pred cccchhheecccccchHHhhhhHHhcCCCCEEeccCCCCc-------------------HHHHHHHHH-cCCeEEEEeC-
Confidence 0123333333222344444443 343 6666666655322 235666665 5778888887
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCC----CCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHh---h
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPR----HRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSL---N 250 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~----~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~---~ 250 (306)
+.+.++..++.|+|.|++.+....+... .+....++.++++.++ +|||+.|||.|.+++..++.. +
T Consensus 136 ------~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~g 209 (336)
T COG2070 136 ------TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADG 209 (336)
T ss_pred ------CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHH
Confidence 5889999999999999998765433222 2335788999999998 999999999999999999986 5
Q ss_pred hhhccccCCC
Q psy4398 251 CAFLRNHYPV 260 (306)
Q Consensus 251 v~vGrall~~ 260 (306)
|++||.++.=
T Consensus 210 Vq~GT~Fl~t 219 (336)
T COG2070 210 VQMGTRFLAT 219 (336)
T ss_pred HHhhhhhhcc
Confidence 6999998863
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-09 Score=94.78 Aligned_cols=139 Identities=11% Similarity=0.091 Sum_probs=107.4
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHH-HhcccccEEEE----ecc-C
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTL-ISNLSIPVSCK----IRV-F 179 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v-~~~~~~pv~vK----ir~-g 179 (306)
+|+.|. .....++.+.++.|++.|-++ +...++|+++.++.+.+ .+.+-+.+++| +.. |
T Consensus 76 v~vGGG-Irs~e~~~~~l~~Ga~kvvig--------------t~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~g 140 (232)
T PRK13586 76 IQVGGG-IRDIEKAKRLLSLDVNALVFS--------------TIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRG 140 (232)
T ss_pred EEEeCC-cCCHHHHHHHHHCCCCEEEEC--------------chhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccC
Confidence 788553 233444555566799998773 45568999999999998 55555566662 111 4
Q ss_pred CCh--HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhc
Q psy4398 180 HNE--ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFL 254 (306)
Q Consensus 180 ~~~--~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vG 254 (306)
|.. .+..++++.+++.|+..+.+++..+++...++ ++++++++++. ..|+|++|||+|.+|..++.+. ++.+|
T Consensus 141 w~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~-d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G~~gvivg 218 (232)
T PRK13586 141 WKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGI-DYNVKDYARLI-RGLKEYAGGVSSDADLEYLKNVGFDYIIVG 218 (232)
T ss_pred CeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCc-CHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEe
Confidence 532 24789999999999999999999999999886 99999999877 5579999999999999998876 45999
Q ss_pred cccCCCC
Q psy4398 255 RNHYPVE 261 (306)
Q Consensus 255 rall~~p 261 (306)
+|+|.+-
T Consensus 219 ~Aly~g~ 225 (232)
T PRK13586 219 MAFYLGK 225 (232)
T ss_pred hhhhcCc
Confidence 9999653
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=99.97 Aligned_cols=208 Identities=17% Similarity=0.219 Sum_probs=133.5
Q ss_pred ccccccccccCCceEEccCCCCC----C--HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRMN----T--LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t----~--~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++|||.+.. + ......+.+.|.-..+.-..+. .+.. +
T Consensus 48 ~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~-~~e~----------------------i 104 (356)
T PF01070_consen 48 TSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSA-SLEE----------------------I 104 (356)
T ss_dssp SSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSS-CHHH----------------------H
T ss_pred CCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccC-CHHH----------------------H
Confidence 88999999999999999999421 2 2244446677765555543321 1100 0
Q ss_pred eecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc----CCc--------------------c
Q psy4398 94 FRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT----GGM--------------------G 147 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~----~~~--------------------G 147 (306)
... .+.+...||. -.+.+...+..+++++ ||+++-+++-+|..-.+. .++ |
T Consensus 105 a~~---~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~ 181 (356)
T PF01070_consen 105 AAA---SGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSG 181 (356)
T ss_dssp HHH---CTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TT
T ss_pred Hhh---ccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccc
Confidence 111 1258899985 4577777778888875 999999987544311000 000 0
Q ss_pred -------------c------cc---cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEccc
Q psy4398 148 -------------A------AL---LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205 (306)
Q Consensus 148 -------------~------~l---~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~ 205 (306)
. .+ ..++.+.-+-++.+++.++.||.||=- .+ .+-++.+.+.|+++|.|++-
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv--~~----~~da~~~~~~G~~~i~vs~h 255 (356)
T PF01070_consen 182 MPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV--LS----PEDAKRAVDAGVDGIDVSNH 255 (356)
T ss_dssp TGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE---S----HHHHHHHHHTT-SEEEEESG
T ss_pred cccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec--cc----HHHHHHHHhcCCCEEEecCC
Confidence 0 00 012334335588999999999999966 33 45567788899999999653
Q ss_pred CCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 206 TKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 206 ~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
-..+.-.++...+.+.++++++ ++|||+.|||++..|+-+++..|+ .+||+++.
T Consensus 256 GGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 256 GGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp TGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred CcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 2222333456788889999977 599999999999999998888754 88888764
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-09 Score=97.59 Aligned_cols=208 Identities=15% Similarity=0.073 Sum_probs=139.0
Q ss_pred ccccccccccCCceEEccCCC------CCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR------MNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~------~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.- -.+......+.+.|...+++-+.+.. +.. +
T Consensus 54 ~~ttllG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~s-iEe----------------------v 110 (361)
T cd04736 54 ISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMS-IED----------------------V 110 (361)
T ss_pred CceeECCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCC-HHH----------------------H
Confidence 888899999999999999872 22334555567788777777543311 100 0
Q ss_pred eecCCCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc----CCc----------------------
Q psy4398 94 FRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT----GGM---------------------- 146 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~----~~~---------------------- 146 (306)
... .+.+...||.-.+.+...+..+++++ ||+++-+..-+|..-.|. .++
T Consensus 111 a~a---~~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~ 187 (361)
T cd04736 111 ARQ---ADGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLL 187 (361)
T ss_pred Hhh---cCCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhh
Confidence 111 12478889877775555666778875 999999976554321100 000
Q ss_pred -------------cc-----------cc--cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEE
Q psy4398 147 -------------GA-----------AL--LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200 (306)
Q Consensus 147 -------------G~-----------~l--~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i 200 (306)
.. .+ ..++.+.-+.++.+++.++.|+.+|=- . ..+-++.+.+.|+|+|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV--~----~~eda~~a~~~G~d~I 261 (361)
T cd04736 188 RFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGI--V----TAEDAKRCIELGADGV 261 (361)
T ss_pred hhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecC--C----CHHHHHHHHHCCcCEE
Confidence 00 00 012233446789999999999999932 2 3456677788999999
Q ss_pred EEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 201 ~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+++....+....+..++.+.++++.+++|||+.|||++..|+-+++..|+ ++||+++.
T Consensus 262 ~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 262 ILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred EECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 986432222222345688899999999999999999999999999998764 99999873
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=94.76 Aligned_cols=208 Identities=14% Similarity=0.085 Sum_probs=137.5
Q ss_pred ccccccccccCCceEEccCCC------CCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR------MNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~------~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.. -.+.+....+.+.|.-.+++-..+ .++. .+
T Consensus 59 tst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss-~slE----------------------eI 115 (366)
T PLN02979 59 MTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWAT-SSVE----------------------EV 115 (366)
T ss_pred CceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcC-CCHH----------------------HH
Confidence 889999999999999999882 122345555667776666654222 1110 01
Q ss_pred eecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccc-cC---Ccc-------ccc----------
Q psy4398 94 FRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQFSL-TG---GMG-------AAL---------- 150 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~-~~---~~G-------~~l---------- 150 (306)
... .+.+...|+. ..|.+...+..+++++ ||.++-+..-+|..-.| +| ++- ..+
T Consensus 116 a~a---~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~ 192 (366)
T PLN02979 116 AST---GPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDE 192 (366)
T ss_pred Hhc---cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCc
Confidence 111 1347889986 4566666777788875 99999997766643111 00 000 000
Q ss_pred ------------cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHH
Q psy4398 151 ------------LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIE 218 (306)
Q Consensus 151 ------------~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~ 218 (306)
.-++...=+-++.+|+.++.||.||-= .+ .+-|+.+.++|+|+|.|++....+....|...+
T Consensus 193 ~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV--~~----~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~ 266 (366)
T PLN02979 193 ANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGV--LT----GEDARIAIQAGAAGIIVSNHGARQLDYVPATIS 266 (366)
T ss_pred ccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecC--CC----HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHH
Confidence 001122225578889999999999976 22 566678888999999997653222223345678
Q ss_pred HHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 219 MIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 219 ~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+.++++++ ++|||+.|||++..|+-+++..|+ .+||+++.
T Consensus 267 ~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 267 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 888888876 599999999999999999888754 99998763
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.1e-09 Score=102.55 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=116.7
Q ss_pred HHHHHHHhcCCCEEEEccC---CCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEEEec---------------
Q psy4398 117 LEAAKKVEHDVAAIDINMG---CPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSCKIR--------------- 177 (306)
Q Consensus 117 ~~aa~~~~~g~d~veln~g---cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir--------------- 177 (306)
..+.+.++.|+|.|-||-. .|.. -|-+.-..+|+++.++.+.+.+. +-+.|++|-.
T Consensus 338 e~~~~~l~~GadkV~i~s~Av~~~~~-----~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~ 412 (538)
T PLN02617 338 EVASEYFRSGADKISIGSDAVYAAEE-----YIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKV 412 (538)
T ss_pred HHHHHHHHcCCCEEEEChHHHhChhh-----hhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccc
Confidence 4455566779999999843 1210 11112345789999999999554 5555665511
Q ss_pred ----------------c-CCC---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCC
Q psy4398 178 ----------------V-FHN---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237 (306)
Q Consensus 178 ----------------~-g~~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI 237 (306)
. ||. .-+..++++.+++.|+..|.++...+++...++ ++++++++++.+++|||++||+
T Consensus 413 ~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~-d~~l~~~v~~~~~ipviasGG~ 491 (538)
T PLN02617 413 TNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGF-DIELVKLVSDAVTIPVIASSGA 491 (538)
T ss_pred cccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCc-CHHHHHHHHhhCCCCEEEECCC
Confidence 1 232 235899999999999999999999999998885 9999999999999999999999
Q ss_pred CCHHHHHHHHHh-hh--hhccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 238 KEIVDYGGVFSL-NC--AFLRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 238 ~s~~~~~~~l~~-~v--~vGrall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
.+++|+.++++. ++ +++-.++......-.+++++|.+.|+++
T Consensus 492 g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 492 GTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred CCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 999999999974 33 4444455544555568999999999763
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=95.57 Aligned_cols=208 Identities=14% Similarity=0.073 Sum_probs=135.2
Q ss_pred ccccccccccCCceEEccCCC------CCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR------MNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~------~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.. -.+......+.+.|...+.+.+.+. ++.. +
T Consensus 60 ~~t~llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~-slEe----------------------i 116 (381)
T PRK11197 60 LETTLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVC-PIEE----------------------V 116 (381)
T ss_pred CceEECCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcC-CHHH----------------------H
Confidence 888899999999999999882 1334455556677876666653321 1110 0
Q ss_pred eecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccc-cC---Cccc---------c---------
Q psy4398 94 FRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQFSL-TG---GMGA---------A--------- 149 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~-~~---~~G~---------~--------- 149 (306)
.. ..+.+...||. ..|.+...+..+++++ ||.++-+..-+|..-.+ ++ ++-. .
T Consensus 117 a~---~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~ 193 (381)
T PRK11197 117 AP---AIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAW 193 (381)
T ss_pred Hh---ccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhh
Confidence 10 11347888985 4567777777888875 99999998776632111 00 0000 0
Q ss_pred ----------ccC----------ChHH------------HHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCC
Q psy4398 150 ----------LLS----------TPDI------------ACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI 197 (306)
Q Consensus 150 ----------l~~----------~~~~------------~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~ 197 (306)
+.+ +.++ .=+-++.+++.++.||.+|== .+ .+-|+.+.+.|+
T Consensus 194 ~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV--~s----~~dA~~a~~~Gv 267 (381)
T PRK11197 194 DVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGI--LD----PEDARDAVRFGA 267 (381)
T ss_pred hhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEec--CC----HHHHHHHHhCCC
Confidence 000 0111 002277888889999999965 22 456677788999
Q ss_pred cEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 198 d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
|+|.|++-...+....+...+.+.++++++ ++|||+.|||++..|+-+++..| +++||+++.
T Consensus 268 d~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 268 DGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY 334 (381)
T ss_pred CEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence 999996532111111234567788888776 69999999999999999999875 499998864
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=91.60 Aligned_cols=144 Identities=8% Similarity=-0.021 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHH-----HHHHHHHhcccccEE--EEeccCCCh
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIAC-----NILTTLISNLSIPVS--CKIRVFHNE 182 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~-----eiv~~v~~~~~~pv~--vKir~g~~~ 182 (306)
-.+.+++.++++.+++++|.||||+.||++.. .|..+.+...... ++++++++.+++|+. +|++. ..
T Consensus 14 ~p~~~~~~~~~~~l~~~ad~iElgip~sdp~a----dG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~--~~ 87 (244)
T PRK13125 14 YPNVESFKEFIIGLVELVDILELGIPPKYPKY----DGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED--YV 87 (244)
T ss_pred CCCHHHHHHHHHHHHhhCCEEEECCCCCCCCC----CCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch--hh
Confidence 35789999999987656999999999998732 3666777777766 899999988888974 67773 33
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC------------------------------------------------CCCCCC-
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK------------------------------------------------AERPRH- 213 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~------------------------------------------------~~~~~~- 213 (306)
.+..++++.+.++|+|++++|+... .++...
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~ 167 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVP 167 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCC
Confidence 4567788888889999998874110 000000
Q ss_pred --CCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 214 --RNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 214 --p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
+.-.+.++++++.. +.||+.-|||++.++++++++.| +.+|++++.
T Consensus 168 ~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 168 LPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred chHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 11245778888887 58999999999999999988774 599999874
|
|
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=96.12 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=77.9
Q ss_pred CChHHHHHHHHHHHhccc-ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC--------CCCCcHHHHHH
Q psy4398 152 STPDIACNILTTLISNLS-IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP--------RHRNRIEMIRT 222 (306)
Q Consensus 152 ~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--------~~p~~~~~v~~ 222 (306)
.+++.+.++++.+|+..+ +||.+|+..+. +..++++.++..|+|+|++++....... .+.+....+.+
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~---~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH---GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC---CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 467788999999999997 99999999542 3457888888888999999876422111 12223344455
Q ss_pred HHhhC-------CCcEEEecCCCCHHHHHHHHHhh---hhhccccC
Q psy4398 223 LTQHL-------KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHY 258 (306)
Q Consensus 223 i~~~~-------~ipvia~GGI~s~~~~~~~l~~~---v~vGrall 258 (306)
+++.+ ++|||++|||.+..|+.+++..| +++||+++
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l 318 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAAL 318 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHH
Confidence 55433 69999999999999999999875 48888876
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-08 Score=93.13 Aligned_cols=208 Identities=14% Similarity=0.091 Sum_probs=137.0
Q ss_pred ccccccccccCCceEEccCCC------CCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR------MNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~------~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.. -.+......+.+.|.-.+++-+.+. ++.. +
T Consensus 60 ~~t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~-slEe----------------------v 116 (367)
T PLN02493 60 MTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATS-SVEE----------------------V 116 (367)
T ss_pred CceEECCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccC-CHHH----------------------H
Confidence 788899999999999999882 1223455556677877666653221 1100 1
Q ss_pred eecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccc-cC---Cc------c-ccc----------
Q psy4398 94 FRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQFSL-TG---GM------G-AAL---------- 150 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~-~~---~~------G-~~l---------- 150 (306)
... .+.+...||. ..|.+...+..+++++ ||.++-|..-+|..-.| +| ++ . ..+
T Consensus 117 a~~---~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 193 (367)
T PLN02493 117 AST---GPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDE 193 (367)
T ss_pred Hhc---CCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCc
Confidence 111 1347889986 4566667777788875 99999997766643111 00 00 0 000
Q ss_pred ------------cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHH
Q psy4398 151 ------------LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIE 218 (306)
Q Consensus 151 ------------~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~ 218 (306)
..++.+.=+-++.+|+.++.||.+|-= .+ .+-++.+.++|+|+|.|++....+....|...+
T Consensus 194 ~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV--~~----~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~ 267 (367)
T PLN02493 194 ANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGV--LT----GEDARIAIQAGAAGIIVSNHGARQLDYVPATIS 267 (367)
T ss_pred ccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecC--CC----HHHHHHHHHcCCCEEEECCCCCCCCCCchhHHH
Confidence 001111124467888889999999966 22 566778888999999997643222223345678
Q ss_pred HHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 219 MIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 219 ~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+.++++++ ++|||+.|||++..|+-+++..|+ .+||+++.
T Consensus 268 ~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 268 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred HHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 888888876 599999999999999998888754 99998763
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.1e-08 Score=92.78 Aligned_cols=209 Identities=13% Similarity=0.111 Sum_probs=135.8
Q ss_pred ccccccccccCCceEEccCCC----C--CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR----M--NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~----~--t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.. . .+......+.+.|.-.+++-+.+. ++.. +
T Consensus 75 t~t~llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~-slEe----------------------I 131 (383)
T cd03332 75 LSVELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSS-SIED----------------------V 131 (383)
T ss_pred CceeeCCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCC-CHHH----------------------H
Confidence 888999999999999999882 1 223345556677877776644321 1100 0
Q ss_pred eecCCCCCCceEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc-C---Cc---------------------
Q psy4398 94 FRTCPREKNKIILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT-G---GM--------------------- 146 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~-~---~~--------------------- 146 (306)
.... .+.+...||.- .+.+...+..+++++ ||.+|-|..-.|..-.|. | ++
T Consensus 132 a~~~--~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~ 209 (383)
T cd03332 132 AAAA--GDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKK 209 (383)
T ss_pred Hhhc--CCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhc
Confidence 1010 12478899865 467777777788875 999999875444211000 0 00
Q ss_pred ---c---------------cccc---CChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEccc
Q psy4398 147 ---G---------------AALL---STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205 (306)
Q Consensus 147 ---G---------------~~l~---~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~ 205 (306)
+ +... .++.+.-+-++.+++.++.||.+|=- .+ .+-|+.+.+.|+|+|.|++-
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV--~~----~~dA~~a~~~G~d~I~vsnh 283 (383)
T cd03332 210 LAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGI--LH----PDDARRAVEAGVDGVVVSNH 283 (383)
T ss_pred cccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecC--CC----HHHHHHHHHCCCCEEEEcCC
Confidence 0 0000 01222236678888888999999922 22 45566778899999999753
Q ss_pred CCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 206 TKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 206 ~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
...+....+...+.+.++++++ ++|||+.|||++..|+-+++..| +.+||+++.
T Consensus 284 GGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~ 342 (383)
T cd03332 284 GGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAY 342 (383)
T ss_pred CCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 2212223455778889999888 59999999999999999999875 499998873
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-07 Score=81.81 Aligned_cols=203 Identities=16% Similarity=0.146 Sum_probs=129.7
Q ss_pred cccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCC
Q psy4398 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKN 102 (306)
Q Consensus 23 ~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 102 (306)
+|+|.+|+.|+++-.+--.+...+.......|+..+..-.-..+. .....+.++ +.++..+.
T Consensus 2 ~i~~~~~~SRl~~Gtgky~s~~~~~~ai~aSg~~ivTva~rR~~~---~~~~~~~~~---------------~~i~~~~~ 63 (248)
T cd04728 2 TIGGKTFSSRLLLGTGKYPSPAIMKEAIEASGAEIVTVALRRVNI---GDPGGESFL---------------DLLDKSGY 63 (248)
T ss_pred eECCEEeecceEEecCCCCCHHHHHHHHHHhCCCEEEEEEEeccc---CCCCcchHH---------------hhccccCC
Confidence 578999999999988875555556666667888776554221110 000111111 11221223
Q ss_pred ceEEEec-CCCHHHHHHHHHHHhc--CCCEEEEcc-CCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 103 KIILQIG-TADPERALEAAKKVEH--DVAAIDINM-GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 103 p~ivql~-g~~~~~~~~aa~~~~~--g~d~veln~-gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
.+..|-. ..+.++....|+.+.+ |-+-|-|.. +.|. .+..|+..+.+-.+.+.+. ++-+..-+.
T Consensus 64 ~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~----------~Llpd~~~tv~aa~~L~~~-Gf~vlpyc~- 131 (248)
T cd04728 64 TLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDK----------TLLPDPIETLKAAEILVKE-GFTVLPYCT- 131 (248)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCcc----------ccccCHHHHHHHHHHHHHC-CCEEEEEeC-
Confidence 3444433 5688999999998875 667665542 2222 3555555444444443221 444444455
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhcc
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLR 255 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGr 255 (306)
. -..+|+++++.|++.|--.+...... .+..+.++++.+++..++|||+.|||.+++|+.++++.| +.+|+
T Consensus 132 -d----d~~~ar~l~~~G~~~vmPlg~pIGsg-~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 132 -D----DPVLAKRLEDAGCAAVMPLGSPIGSG-QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred -C----CHHHHHHHHHcCCCEeCCCCcCCCCC-CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 3 36788999999999995544443322 345578999999998899999999999999999999985 49999
Q ss_pred ccCC--CC
Q psy4398 256 NHYP--VE 261 (306)
Q Consensus 256 all~--~p 261 (306)
++.. ||
T Consensus 206 AIt~a~dP 213 (248)
T cd04728 206 AIAKAKDP 213 (248)
T ss_pred HhcCCCCH
Confidence 9875 56
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=90.17 Aligned_cols=221 Identities=10% Similarity=0.018 Sum_probs=124.7
Q ss_pred cccCCceEEccCC-CCCCHHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCce
Q psy4398 27 INYSNKIILAPMV-RMNTLPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKI 104 (306)
Q Consensus 27 l~l~n~i~lAPm~-~~t~~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ 104 (306)
+.++.|++.+||. ++++..+.....++| .|.+-+...+++.+....+..... +. .+.|+
T Consensus 10 lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~------------------lt-~~~Pf 70 (418)
T cd04742 10 YGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAA------------------LG-NGEPY 70 (418)
T ss_pred hCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHh------------------cc-CCCCe
Confidence 4579999999999 799999887655654 688888777665543322221111 10 15699
Q ss_pred EEEecCC--CHHHHHHHHHHH-hcCCCEEEEcc-CCCcccccc-CCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 105 ILQIGTA--DPERALEAAKKV-EHDVAAIDINM-GCPKQFSLT-GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 105 ivql~g~--~~~~~~~aa~~~-~~g~d~veln~-gcP~~~~~~-~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
.+||+.+ +++...+..+.+ ++|...|+... .-|.+.... ...|.....+-. + .....|..|++.
T Consensus 71 GVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~--------~--~~~~~ViakVsr~ 140 (418)
T cd04742 71 GVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGR--------V--QIANRIIAKVSRP 140 (418)
T ss_pred EEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCccccccc--------c--cccceEEEecCCh
Confidence 9998863 333334444444 45888888752 111110000 000000000000 0 001235555431
Q ss_pred -------CCChHH-----------HHHHHHHHHHcC-CcEEEEcccCCCCCCCCC----CcHHHHHHHHhhC--------
Q psy4398 179 -------FHNEAD-----------TIALCKRLEACG-IIAIGVHGRTKAERPRHR----NRIEMIRTLTQHL-------- 227 (306)
Q Consensus 179 -------g~~~~~-----------~~~~a~~l~~~G-~d~i~v~~~~~~~~~~~p----~~~~~v~~i~~~~-------- 227 (306)
++-+++ +.+-|+.+++.| +|.|++. .. .+++.+. .-+..+.++++.+
T Consensus 141 evAs~~f~ppp~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~E-AGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~ 218 (418)
T cd04742 141 EVAEAFMSPAPERILKKLLAEGKITEEQAELARRVPVADDITVE-AD-SGGHTDNRPLSVLLPTIIRLRDELAARYGYRR 218 (418)
T ss_pred hhhhhhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-cc-CCCCCCCccHHhHHHHHHHHHHHHhhccccCC
Confidence 111110 345667777777 6999987 32 2222221 1234455555555
Q ss_pred CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCc-hHHHHHHHHHhcCCC
Q psy4398 228 KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKL-PKTILYAHCKYKRFE 278 (306)
Q Consensus 228 ~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~-~~~~l~~~~~~~g~~ 278 (306)
++|||+.|||.|.+++..++..| +++|+.++.-++. .....++.+.+.+..
T Consensus 219 ~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~~L~~a~~~ 273 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKDLLQKAGVQ 273 (418)
T ss_pred CceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHHHHHhCCCC
Confidence 69999999999999999999875 5999999875522 223666666555544
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=90.39 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=107.3
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEEeccC---
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCKIRVF--- 179 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~g--- 179 (306)
+=+|++| +...+.++.+.+..|++.|-|+ +...++ +++.++++.+.+ .+-+.+++|-...
T Consensus 79 ~~v~vgG-Gir~~edv~~~l~~Ga~~viig--------------t~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~ 142 (233)
T cd04723 79 LGLWVDG-GIRSLENAQEWLKRGASRVIVG--------------TETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKP 142 (233)
T ss_pred CCEEEec-CcCCHHHHHHHHHcCCCeEEEc--------------ceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccc
Confidence 3367755 3345566666677899998885 334567 899999999865 4445555543210
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccc
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRN 256 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGra 256 (306)
.+..+..++++.+++. ++.+++++....+...++ ++++++++.+.+++||++.|||+|.+|++++++.|+ .+|++
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~g~-~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsa 220 (233)
T cd04723 143 TDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQGP-DLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALVASA 220 (233)
T ss_pred cCcCCHHHHHHHHHHh-CCeEEEEEcCccccCCCc-CHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehH
Confidence 1234578899999999 999999998888777664 999999999999999999999999999999999754 99999
Q ss_pred cCCCC
Q psy4398 257 HYPVE 261 (306)
Q Consensus 257 ll~~p 261 (306)
++.+-
T Consensus 221 l~~g~ 225 (233)
T cd04723 221 LHDGG 225 (233)
T ss_pred HHcCC
Confidence 98764
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.9e-07 Score=78.09 Aligned_cols=203 Identities=17% Similarity=0.136 Sum_probs=128.1
Q ss_pred ccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCC
Q psy4398 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREK 101 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (306)
..|++.+|+.|+++-.+--.+...++......|+..+..-.-..+.. ...+++ .+.++..+
T Consensus 2 l~i~~~~~~SRl~~Gtgky~s~~~~~~ai~asg~~ivTvalrR~~~~----~~~~~~---------------~~~i~~~~ 62 (250)
T PRK00208 2 LTIAGKTFSSRLLLGTGKYPSPQVMQEAIEASGAEIVTVALRRVNLG----QGGDNL---------------LDLLPPLG 62 (250)
T ss_pred cEECCEEeeccceEecCCCCCHHHHHHHHHHhCCCeEEEEEEeecCC----CCcchH---------------HhhccccC
Confidence 56899999999999888744555566666678887765542211110 000111 11122223
Q ss_pred CceEEEec-CCCHHHHHHHHHHHhc--CCCEEEEcc-CCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 102 NKIILQIG-TADPERALEAAKKVEH--DVAAIDINM-GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~-g~~~~~~~~aa~~~~~--g~d~veln~-gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
..+..|-. +.+.++....|+.+.+ +-+-|-|.. +.|. .+..|+..+.+-.+.+.+. ++-+..-+.
T Consensus 63 ~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~----------~llpd~~~tv~aa~~L~~~-Gf~vlpyc~ 131 (250)
T PRK00208 63 VTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDK----------TLLPDPIETLKAAEILVKE-GFVVLPYCT 131 (250)
T ss_pred CEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCC----------CCCcCHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 33444433 5788999999998876 556655532 2222 2334444433333333211 444443455
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFL 254 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vG 254 (306)
. -..+|+++++.|++.|--.+...... .+..+.+.++.+++..++|||+.|||.+++|+.++++.| +.+|
T Consensus 132 --~----d~~~ak~l~~~G~~~vmPlg~pIGsg-~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 132 --D----DPVLAKRLEEAGCAAVMPLGAPIGSG-LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred --C----CHHHHHHHHHcCCCEeCCCCcCCCCC-CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3 36788999999999995434433322 344567889999998899999999999999999999985 4999
Q ss_pred cccCC--CC
Q psy4398 255 RNHYP--VE 261 (306)
Q Consensus 255 rall~--~p 261 (306)
+++.. ||
T Consensus 205 SAItka~dP 213 (250)
T PRK00208 205 TAIAVAGDP 213 (250)
T ss_pred hHhhCCCCH
Confidence 99875 45
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.2e-07 Score=90.00 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHH
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~ 188 (306)
+..++++..+...+++|+|.|+|+.... +.....+.++.+++.. +.+|.++-- . +.+-
T Consensus 237 g~~~~~~~~~~~l~~ag~d~i~id~a~G---------------~s~~~~~~i~~ik~~~~~~~v~aG~V--~----t~~~ 295 (495)
T PTZ00314 237 STRPEDIERAAALIEAGVDVLVVDSSQG---------------NSIYQIDMIKKLKSNYPHVDIIAGNV--V----TADQ 295 (495)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEecCCC---------------CchHHHHHHHHHHhhCCCceEEECCc--C----CHHH
Confidence 4456666666666677999999987532 2233467888888875 566666322 2 3556
Q ss_pred HHHHHHcCCcEEEEc--cc----CCCCCCCCCCcHHHH---HHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccc
Q psy4398 189 CKRLEACGIIAIGVH--GR----TKAERPRHRNRIEMI---RTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRN 256 (306)
Q Consensus 189 a~~l~~~G~d~i~v~--~~----~~~~~~~~p~~~~~v---~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGra 256 (306)
++.+.++|+|+|.+. +. ++.....+.+.+..+ .++.+..++|||+.|||.+..|+.+++..|+ ++|++
T Consensus 296 a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 296 AKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSL 375 (495)
T ss_pred HHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECch
Confidence 677788999999863 11 111111222344444 4444556899999999999999999998864 99998
Q ss_pred cC
Q psy4398 257 HY 258 (306)
Q Consensus 257 ll 258 (306)
+.
T Consensus 376 ~a 377 (495)
T PTZ00314 376 LA 377 (495)
T ss_pred hc
Confidence 64
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=87.76 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=121.0
Q ss_pred cccccCCceEEccCCCCCCHHHHHH-HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCc
Q psy4398 25 ANINYSNKIILAPMVRMNTLPFRLL-ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNK 103 (306)
Q Consensus 25 ~~l~l~n~i~lAPm~~~t~~~~r~~-~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p 103 (306)
.++.|+-||+-|||-.+|+..+... ++.+|.|.+--.+...+.... .+.....+ .+. .. -++....
T Consensus 32 ~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~~-v~~vK~~~-----~~a-----~~--d~~~~l~ 98 (352)
T PF00478_consen 32 RNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAEE-VKKVKRYY-----PNA-----SK--DEKGRLL 98 (352)
T ss_dssp TSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHHH-HHHHHTHH-----TTH-----HB--HTTSCBC
T ss_pred CCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHHH-Hhhhcccc-----ccc-----cc--cccccce
Confidence 8899999999999999999998864 555667887776653322211 11100000 000 00 0112234
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccCCCh
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVFHNE 182 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~ 182 (306)
+.+.+ +...+++..+...+++|+|.|-|....- +.+.+.+.++.+|+..+ +||++.-= -
T Consensus 99 V~aav-g~~~~~~er~~~L~~agvD~ivID~a~g---------------~s~~~~~~ik~ik~~~~~~~viaGNV--~-- 158 (352)
T PF00478_consen 99 VAAAV-GTRDDDFERAEALVEAGVDVIVIDSAHG---------------HSEHVIDMIKKIKKKFPDVPVIAGNV--V-- 158 (352)
T ss_dssp EEEEE-ESSTCHHHHHHHHHHTT-SEEEEE-SST---------------TSHHHHHHHHHHHHHSTTSEEEEEEE-----
T ss_pred EEEEe-cCCHHHHHHHHHHHHcCCCEEEccccCc---------------cHHHHHHHHHHHHHhCCCceEEeccc--C--
Confidence 55555 4444567777777778999998864431 24556678889988875 77776543 1
Q ss_pred HHHHHHHHHHHHcCCcEEEEccc------CCCCCCCCCCcHHHHH---HHHhhCCCcEEEecCCCCHHHHHHHHHhhh--
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGR------TKAERPRHRNRIEMIR---TLTQHLKIPVIANGGSKEIVDYGGVFSLNC-- 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~------~~~~~~~~p~~~~~v~---~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-- 251 (306)
+.+-++.|.++|+|+|.+--. |+...-.+-+.+..+. +.++..++|||+=|||++.-|+-+++..|+
T Consensus 159 --T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~ 236 (352)
T PF00478_consen 159 --TYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADA 236 (352)
T ss_dssp --SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SE
T ss_pred --CHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccc
Confidence 356677788999999997311 1111111222444444 444455899999999999999999998865
Q ss_pred -hhcccc
Q psy4398 252 -AFLRNH 257 (306)
Q Consensus 252 -~vGral 257 (306)
|+|+.|
T Consensus 237 VMlG~ll 243 (352)
T PF00478_consen 237 VMLGSLL 243 (352)
T ss_dssp EEESTTT
T ss_pred eeechhh
Confidence 888876
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.6e-07 Score=84.82 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=117.0
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEec
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIR 177 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir 177 (306)
...|+..|+.+.+++++.+.++.+. +||+.|.+|+|. +++...+.++++++.++ .++.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~vD~n 185 (316)
T cd03319 122 RPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRVDAN 185 (316)
T ss_pred CCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEEeCC
Confidence 3457788888889998888777664 599999999753 23445677888888774 77888888
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----hh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----AF 253 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~v 253 (306)
.+|+.+++.++++.+++.|+++| +++.. +.+++.++++++.+++||++.+.+.+.++++++++.+. ++
T Consensus 186 ~~~~~~~A~~~~~~l~~~~l~~i-------EeP~~-~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~ 257 (316)
T cd03319 186 QGWTPEEAVELLRELAELGVELI-------EQPVP-AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINI 257 (316)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEE-------ECCCC-CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEE
Confidence 88999999999999999999888 33333 45889999999999999999999999999999988532 22
Q ss_pred ccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 254 LRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 254 Grall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
--... +-...-+.+.++.+++|++.
T Consensus 258 ~~~~~-GGi~~~~~~~~~a~~~gi~~ 282 (316)
T cd03319 258 KLMKT-GGLTEALRIADLARAAGLKV 282 (316)
T ss_pred ecccc-CCHHHHHHHHHHHHHcCCCE
Confidence 11111 11112237778889999883
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=90.52 Aligned_cols=88 Identities=15% Similarity=0.241 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
.+..++++.+++.|++.|++++.+..+. .++.++++++++++.+++||+++|||+|.++++++++.+ +++||+++.
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~-~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSE-GRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccc-cCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 3688999999999999999999887543 345699999999999999999999999999999999864 599999999
Q ss_pred CCCchHHHHHHH
Q psy4398 260 VEKLPKTILYAH 271 (306)
Q Consensus 260 ~p~~~~~~l~~~ 271 (306)
||.+.....+.|
T Consensus 106 ~p~~~~~i~~~~ 117 (243)
T cd04731 106 NPELIREIAKRF 117 (243)
T ss_pred ChHHHHHHHHHc
Confidence 996655444443
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.3e-07 Score=85.96 Aligned_cols=224 Identities=10% Similarity=0.027 Sum_probs=122.8
Q ss_pred cccCCceEEccCC-CCCCHHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCce
Q psy4398 27 INYSNKIILAPMV-RMNTLPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKI 104 (306)
Q Consensus 27 l~l~n~i~lAPm~-~~t~~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ 104 (306)
+.++.|++.+||. ++|+..+.....++| .|.+-+...+++.+.......... +. .+.|+
T Consensus 15 lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~------------------~~-~~p~f 75 (444)
T TIGR02814 15 YGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQA------------------LP-GGPAY 75 (444)
T ss_pred hCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHh------------------cC-CCCce
Confidence 5679999999999 799999887655654 588888777665544332221111 11 12239
Q ss_pred EEEecCCC--HHHHHHHHHHH-hcCCCEEEEccC---CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 105 ILQIGTAD--PERALEAAKKV-EHDVAAIDINMG---CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 105 ivql~g~~--~~~~~~aa~~~-~~g~d~veln~g---cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
.+||+.+. ++...+..+.+ +.+...|+.... .|.- ..-...|.....+-+ + .....|..|++.
T Consensus 76 GVNL~~~~~~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~~G~~~~~~g~--------~--~~~~~ViakVsr 144 (444)
T TIGR02814 76 GVNLIHSPSDPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRAKGLHRDADGR--------V--VIRNRLIAKVSR 144 (444)
T ss_pred EEEecccCCCcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhhcccccccccc--------c--cccceEEEecCC
Confidence 99988653 22122333433 458888888533 2221 010000100000000 0 011244555431
Q ss_pred --------CCChHH-----------HHHHHHHHHHcC-CcEEEEcccCCCCCCCCC-CcHHHHHHH---HhhC-------
Q psy4398 179 --------FHNEAD-----------TIALCKRLEACG-IIAIGVHGRTKAERPRHR-NRIEMIRTL---TQHL------- 227 (306)
Q Consensus 179 --------g~~~~~-----------~~~~a~~l~~~G-~d~i~v~~~~~~~~~~~p-~~~~~v~~i---~~~~------- 227 (306)
++-++. +.+-|+.+++.| +|.|++. .. .+++.+. ..+.++..| ++.+
T Consensus 145 ~~vAs~f~~p~p~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~E-AGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~ 222 (444)
T TIGR02814 145 PEVAEAFMSPAPAHILQKLLAEGRITREEAELARRVPVADDICVE-AD-SGGHTDNRPLVVLLPAIIRLRDTLMRRYGYR 222 (444)
T ss_pred HHHHHHhcCCCcHHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-cc-CCCCCCCCcHHHHHHHHHHHHHHHhhcccCC
Confidence 111111 234556677777 5989875 22 2223221 133444444 4555
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCc-hHHHHHHHHHhcCCCCCcc
Q psy4398 228 -KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKL-PKTILYAHCKYKRFEVPKY 282 (306)
Q Consensus 228 -~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~-~~~~l~~~~~~~g~~~~~~ 282 (306)
++|||+.|||.|++++..++..| |++|+.++.-++. .....++.+.+.+..-|.+
T Consensus 223 ~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Esgas~~~K~~L~~a~~~DT~~ 282 (444)
T TIGR02814 223 KPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEAGTSDNVKKLLAKADVQDTAY 282 (444)
T ss_pred CCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccccCCHHHHHHHHhCCCcCeEE
Confidence 68999999999999999999875 5999999875522 2235666665555443333
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.7e-07 Score=81.21 Aligned_cols=195 Identities=10% Similarity=0.026 Sum_probs=129.6
Q ss_pred cccccc-----ccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceee
Q psy4398 20 ANANQA-----NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94 (306)
Q Consensus 20 ~~~~~~-----~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 94 (306)
++.+++ .+.+.-||+.|.|-.+++..+...-.+.|.=.++=++.+.+......+..
T Consensus 30 l~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~~e~~~~~v~~~------------------- 90 (343)
T TIGR01305 30 LERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYSVDEWKAFATNS------------------- 90 (343)
T ss_pred eeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHhh-------------------
Confidence 445554 45788999999999999999988655666444444544444432221110
Q ss_pred ecCCCCCCceEEEecCCCHHHHHHHHHHHhc--CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 95 RTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 95 ~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~--g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.++....+.+.+ |..++++..+...+++ +.|.|-|..++- +.+.+.+.++.+|+.+.-+.
T Consensus 91 --~~~~~~~~~vsv-G~~~~d~er~~~L~~a~~~~d~iviD~AhG---------------hs~~~i~~ik~ir~~~p~~~ 152 (343)
T TIGR01305 91 --SPDCLQNVAVSS-GSSDNDLEKMTSILEAVPQLKFICLDVANG---------------YSEHFVEFVKLVREAFPEHT 152 (343)
T ss_pred --cccccceEEEEe-ccCHHHHHHHHHHHhcCCCCCEEEEECCCC---------------cHHHHHHHHHHHHhhCCCCe
Confidence 001122355555 6777889888888876 699999975542 35677888999999875444
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc------ccCCCCCCCCCCcHHHHHHHHhhC---CCcEEEecCCCCHHHH
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH------GRTKAERPRHRNRIEMIRTLTQHL---KIPVIANGGSKEIVDY 243 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~------~~~~~~~~~~p~~~~~v~~i~~~~---~ipvia~GGI~s~~~~ 243 (306)
.+|=.+ . +.+-++.|.++|+|+|.|. +.++.-.-.+-+.+..+.+++++. ++|||+=|||+..-|.
T Consensus 153 viaGNV-~----T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI 227 (343)
T TIGR01305 153 IMAGNV-V----TGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDV 227 (343)
T ss_pred EEEecc-c----CHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHH
Confidence 444321 1 3456667788999999875 222222222323677777777665 6899999999999999
Q ss_pred HHHHHhhh---hhccc
Q psy4398 244 GGVFSLNC---AFLRN 256 (306)
Q Consensus 244 ~~~l~~~v---~vGra 256 (306)
-+++..|+ ++|..
T Consensus 228 ~KALA~GAd~VMlG~l 243 (343)
T TIGR01305 228 AKAFGAGADFVMLGGM 243 (343)
T ss_pred HHHHHcCCCEEEECHh
Confidence 99998764 88843
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-07 Score=82.57 Aligned_cols=131 Identities=10% Similarity=0.053 Sum_probs=94.6
Q ss_pred EEecCC--CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec----cC
Q psy4398 106 LQIGTA--DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR----VF 179 (306)
Q Consensus 106 vql~g~--~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir----~g 179 (306)
+|++|. +.++..++...+ .+++.|-++ +...++|+++.++. .-+.+++|-. .|
T Consensus 80 v~vgGGirs~e~~~~~~~~l-~~a~rvvig--------------T~a~~~p~~l~~~~------~vvslD~~~g~v~~~g 138 (221)
T TIGR00734 80 LIADCGVRSPEDLETLPFTL-EFASRVVVA--------------TETLDITELLRECY------TVVSLDFKEKFLDASG 138 (221)
T ss_pred EEEcCccCCHHHHHHHHhhh-ccceEEeec--------------ChhhCCHHHHHHhh------hEEEEEeECCcccccc
Confidence 788663 444433332211 257887663 44457888887764 1345555521 14
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccc
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRN 256 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGra 256 (306)
|. +...++.+.+.+.|+ .+.++...+++...++ ++++++++++.+++|||++|||+|++|++++.+.| +.+|++
T Consensus 139 ~~-~~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G~-d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsa 215 (221)
T TIGR00734 139 LF-ESLEEVRDFLNSFDY-GLIVLDIHSVGTMKGP-NLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLVATA 215 (221)
T ss_pred cc-ccHHHHHHHHHhcCC-EEEEEECCccccCCCC-CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHH
Confidence 43 456778888888998 7888888888777775 99999999999999999999999999999988764 599999
Q ss_pred cCCC
Q psy4398 257 HYPV 260 (306)
Q Consensus 257 ll~~ 260 (306)
++.+
T Consensus 216 l~~g 219 (221)
T TIGR00734 216 VHKG 219 (221)
T ss_pred hhCC
Confidence 9865
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=98.76 E-value=8.6e-08 Score=81.13 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHc
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~ 195 (306)
+.++-..++.|+|.|=|.+.- -.||+.+.++++.+++.. ..++.-++ +.+-+..+.++
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~--------------R~Rp~~l~~li~~i~~~~-~l~MADis-------t~ee~~~A~~~ 111 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATD--------------RPRPETLEELIREIKEKY-QLVMADIS-------TLEEAINAAEL 111 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SS--------------SS-SS-HHHHHHHHHHCT-SEEEEE-S-------SHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEecCC--------------CCCCcCHHHHHHHHHHhC-cEEeeecC-------CHHHHHHHHHc
Confidence 455666677899999996432 246678899999999987 88888888 46667778899
Q ss_pred CCcEEEE--cccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 196 GIIAIGV--HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 196 G~d~i~v--~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
|+|.|.- +|.+...... .+++++++++++. ++|||+-|+|.|++++.++++.|+ .+|+|+=
T Consensus 112 G~D~I~TTLsGYT~~t~~~-~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAIT 177 (192)
T PF04131_consen 112 GFDIIGTTLSGYTPYTKGD-GPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAIT 177 (192)
T ss_dssp T-SEEE-TTTTSSTTSTTS-SHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH
T ss_pred CCCEEEcccccCCCCCCCC-CCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccC
Confidence 9999974 4555544443 4599999999987 899999999999999999999875 8999865
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-07 Score=82.34 Aligned_cols=126 Identities=10% Similarity=0.087 Sum_probs=86.1
Q ss_pred HhcCCCEEEEccCCCccccccCCccccccCCh--HHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEE
Q psy4398 123 VEHDVAAIDINMGCPKQFSLTGGMGAALLSTP--DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200 (306)
Q Consensus 123 ~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~--~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i 200 (306)
.+.|+|.|-+...- ...| +.+.++++.+++..++++.+.+. + .+.++.+.+.|+|++
T Consensus 85 ~~aGad~I~~d~~~--------------~~~p~~~~~~~~i~~~~~~~~i~vi~~v~---t----~ee~~~a~~~G~d~i 143 (221)
T PRK01130 85 AAAGADIIALDATL--------------RPRPDGETLAELVKRIKEYPGQLLMADCS---T----LEEGLAAQKLGFDFI 143 (221)
T ss_pred HHcCCCEEEEeCCC--------------CCCCCCCCHHHHHHHHHhCCCCeEEEeCC---C----HHHHHHHHHcCCCEE
Confidence 34699988885321 0112 45567888887644677776655 2 233567889999999
Q ss_pred EEccc--CCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCchHHHHHH
Q psy4398 201 GVHGR--TKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPKTILYA 270 (306)
Q Consensus 201 ~v~~~--~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~~~l~~ 270 (306)
.++.+ +.......+.++++++++++.+++||++.|||+++++++++++.| +++|++++ +|..+...+.+
T Consensus 144 ~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~-~~~~~~~~~~~ 217 (221)
T PRK01130 144 GTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAIT-RPEEITKWFVD 217 (221)
T ss_pred EcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc-CCHHHHHHHHH
Confidence 87532 221112234478999999999999999999999999999999874 59999976 45444443333
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-06 Score=80.47 Aligned_cols=189 Identities=9% Similarity=0.019 Sum_probs=124.2
Q ss_pred ccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceE
Q psy4398 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKII 105 (306)
Q Consensus 26 ~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i 105 (306)
...+.-||+.|+|-.+++..+...-.+.|.=.++=++.+.+......+... ++....+.
T Consensus 42 ~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~~e~~~~fv~~~~---------------------~~~~~~~~ 100 (346)
T PRK05096 42 QSWSGVPIIAANMDTVGTFEMAKALASFDILTAVHKHYSVEEWAAFVNNSS---------------------ADVLKHVM 100 (346)
T ss_pred ccccCCceEecCCCccccHHHHHHHHHCCCeEEEecCCCHHHHHHHHHhcc---------------------ccccceEE
Confidence 344558999999999999998886556664444445454443322111100 01112455
Q ss_pred EEecCCCHHHHHHHHHHHh--cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCCh
Q psy4398 106 LQIGTADPERALEAAKKVE--HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNE 182 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~--~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~ 182 (306)
+.+ |..++++..+.+.++ +|+|.|-|..++- +.+.+.++++.+|+.. +.+|++.-=
T Consensus 101 vav-G~~~~d~er~~~L~~~~~g~D~iviD~AhG---------------hs~~~i~~ik~ik~~~P~~~vIaGNV----- 159 (346)
T PRK05096 101 VST-GTSDADFEKTKQILALSPALNFICIDVANG---------------YSEHFVQFVAKAREAWPDKTICAGNV----- 159 (346)
T ss_pred EEe-cCCHHHHHHHHHHHhcCCCCCEEEEECCCC---------------cHHHHHHHHHHHHHhCCCCcEEEecc-----
Confidence 555 667788998888887 4999999975542 3567788999999876 455554422
Q ss_pred HHHHHHHHHHHHcCCcEEEEc------ccCCCCCCCCCCcHHHHHHHH---hhCCCcEEEecCCCCHHHHHHHHHhhh--
Q psy4398 183 ADTIALCKRLEACGIIAIGVH------GRTKAERPRHRNRIEMIRTLT---QHLKIPVIANGGSKEIVDYGGVFSLNC-- 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~------~~~~~~~~~~p~~~~~v~~i~---~~~~ipvia~GGI~s~~~~~~~l~~~v-- 251 (306)
.+.+.++.|.++|+|++-|- +.|+.-.-.+-+.+..+.+++ +..++|||+-|||.+.-|+-+++.+|+
T Consensus 160 -~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~ 238 (346)
T PRK05096 160 -VTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADF 238 (346)
T ss_pred -cCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCE
Confidence 13567788899999999752 122222222323555554444 445899999999999999999998764
Q ss_pred -hhcccc
Q psy4398 252 -AFLRNH 257 (306)
Q Consensus 252 -~vGral 257 (306)
|+|+.|
T Consensus 239 VMlGsll 245 (346)
T PRK05096 239 VMLGGML 245 (346)
T ss_pred EEeChhh
Confidence 888765
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-07 Score=81.78 Aligned_cols=121 Identities=16% Similarity=0.209 Sum_probs=86.3
Q ss_pred HHHHHHhcCCCEEEEccCCCccccccCCccccccCCh--HHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHc
Q psy4398 118 EAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP--DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195 (306)
Q Consensus 118 ~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~--~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~ 195 (306)
++....+.|+|.|.++...- .+| +.+.++++++++..++++.+.+. + .+.+..+.+.
T Consensus 84 ~~~~a~~aGad~I~~~~~~~--------------~~p~~~~~~~~i~~~~~~g~~~iiv~v~---t----~~ea~~a~~~ 142 (219)
T cd04729 84 EVDALAAAGADIIALDATDR--------------PRPDGETLAELIKRIHEEYNCLLMADIS---T----LEEALNAAKL 142 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCC--------------CCCCCcCHHHHHHHHHHHhCCeEEEECC---C----HHHHHHHHHc
Confidence 33333456999999975431 112 25667888887654678887665 2 2345777889
Q ss_pred CCcEEEEc--ccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 196 GIIAIGVH--GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 196 G~d~i~v~--~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
|+|++.++ +++.........++++++++++.+++||+++|||.+.++++++++.| +++|++++.
T Consensus 143 G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 143 GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 99999763 43332222233478999999999999999999999999999999874 599999875
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.5e-08 Score=88.10 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
.+..++++.+++.|++.+++++++..+... +.+++.++++++.+++||+++|||+|.++++++++.+ +++|++++.
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~-~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGR-DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccC-cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 368899999999999999999998765554 5699999999999999999999999999999999875 499999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
+|.+.+.
T Consensus 109 ~p~~~~e 115 (253)
T PRK02083 109 NPELISE 115 (253)
T ss_pred CcHHHHH
Confidence 9954433
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.3e-08 Score=86.80 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+++.|++.+++++....+. ....++++++++++.+++||++.|||+|.+++++++..++ .+||+++.
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~-~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE-GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc-cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 3688999999999999999999876643 3346999999999999999999999999999999999764 99999999
Q ss_pred CCCchHHHHHHH
Q psy4398 260 VEKLPKTILYAH 271 (306)
Q Consensus 260 ~p~~~~~~l~~~ 271 (306)
||.+.+...+.|
T Consensus 109 ~p~~~~~~~~~~ 120 (254)
T TIGR00735 109 NPELIYELADRF 120 (254)
T ss_pred ChHHHHHHHHHc
Confidence 996554433333
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.2e-07 Score=78.15 Aligned_cols=122 Identities=14% Similarity=0.228 Sum_probs=89.6
Q ss_pred HHHHHHHhcCCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe---ccCCChHHHHHHHHH
Q psy4398 117 LEAAKKVEHDVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI---RVFHNEADTIALCKR 191 (306)
Q Consensus 117 ~~aa~~~~~g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi---r~g~~~~~~~~~a~~ 191 (306)
.++...+++|++.||+ |.++++. .+.+.+.+-++++++.+ .|+.+|+ ....+.++....++.
T Consensus 78 ~e~~~Ai~~GA~EiD~Vin~~~~~~------------g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~ 144 (221)
T PRK00507 78 FEAKDAIANGADEIDMVINIGALKS------------GDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEI 144 (221)
T ss_pred HHHHHHHHcCCceEeeeccHHHhcC------------CCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHH
Confidence 3444445679998886 5555542 34667777777777765 4778888 544566778999999
Q ss_pred HHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 192 LEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
+.++|+|+|-.+... ..+....+.++.+++.+ +++|.++|||+|.+++.+++++|+ -+|+
T Consensus 145 ~~~agadfIKTsTG~----~~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGt 207 (221)
T PRK00507 145 AKEAGADFVKTSTGF----STGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGT 207 (221)
T ss_pred HHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEcc
Confidence 999999977653221 12335778888888888 599999999999999999999877 5555
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-06 Score=78.98 Aligned_cols=198 Identities=15% Similarity=0.128 Sum_probs=125.5
Q ss_pred CCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEecCCCHHHHHH
Q psy4398 40 RMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALE 118 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g~~~~~~~~ 118 (306)
++++.....++.++|+ +..+-|-+.++.+..+.-. ..++ +..-+.+.+. -+.|++.=+ ....+.+
T Consensus 14 ~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~---R~~~-----~~~I~~Ik~~---V~iPVIGi~---K~~~~~E 79 (283)
T cd04727 14 DVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVA---RMAD-----PKMIKEIMDA---VSIPVMAKV---RIGHFVE 79 (283)
T ss_pred EeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCee---ecCC-----HHHHHHHHHh---CCCCeEEee---ehhHHHH
Confidence 5778888888888886 6666665544433221100 0011 0000112222 245655332 1222777
Q ss_pred HHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 119 AAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 119 aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
+-...+.|+|.|+ |.. -.+| +.+++..+|+..+.|+..-++ +.+-+....+.|+|
T Consensus 80 a~~L~eaGvDiID----aT~------------r~rP--~~~~~~~iK~~~~~l~MAD~s-------tleEal~a~~~Gad 134 (283)
T cd04727 80 AQILEALGVDMID----ESE------------VLTP--ADEEHHIDKHKFKVPFVCGAR-------NLGEALRRISEGAA 134 (283)
T ss_pred HHHHHHcCCCEEe----ccC------------CCCc--HHHHHHHHHHHcCCcEEccCC-------CHHHHHHHHHCCCC
Confidence 7776777999996 211 1233 578889998888999999998 45566677889999
Q ss_pred EEEEcc--cCCC------------------CCC----------CCCCcHHHHHHHHhhCCCcEE--EecCCCCHHHHHHH
Q psy4398 199 AIGVHG--RTKA------------------ERP----------RHRNRIEMIRTLTQHLKIPVI--ANGGSKEIVDYGGV 246 (306)
Q Consensus 199 ~i~v~~--~~~~------------------~~~----------~~p~~~~~v~~i~~~~~ipvi--a~GGI~s~~~~~~~ 246 (306)
.|--+. .|.. ..| ...++|++++++++.+++||| +.|||.+++++..+
T Consensus 135 ~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v 214 (283)
T cd04727 135 MIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALM 214 (283)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHH
Confidence 997543 3332 111 123589999999999999997 99999999999999
Q ss_pred HHhh---hhhccccCC--CCCchHHHHHHHHHhcC
Q psy4398 247 FSLN---CAFLRNHYP--VEKLPKTILYAHCKYKR 276 (306)
Q Consensus 247 l~~~---v~vGrall~--~p~~~~~~l~~~~~~~g 276 (306)
++.| +.+|++++. ||...-..+.+.+.+.+
T Consensus 215 ~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~~ 249 (283)
T cd04727 215 MQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYD 249 (283)
T ss_pred HHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhcC
Confidence 9975 499999985 45222224444455433
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-06 Score=80.19 Aligned_cols=158 Identities=14% Similarity=0.150 Sum_probs=117.1
Q ss_pred CCceEEEecCC--CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEE
Q psy4398 101 KNKIILQIGTA--DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCK 175 (306)
Q Consensus 101 ~~p~ivql~g~--~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vK 175 (306)
..|+..++... +++++.+.++.+. +||+.+.|+++..... .++++...++++++|+.+ +.++.+.
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~----------~~~~~~d~~~v~~ir~~~g~~~~l~vD 195 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG----------GEDLREDLARVRAVREAVGPDVDLMVD 195 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc----------hHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 34566666555 5899988888775 5999999998753211 167888899999999988 4678888
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhcc
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLR 255 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGr 255 (306)
...+|+.+++.++++.+++.|++++. ++. .+.+++..+.+++.+++||++...+.++++++++++.+. ..
T Consensus 196 aN~~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~--~d 265 (357)
T cd03316 196 ANGRWDLAEAIRLARALEEYDLFWFE-------EPV-PPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGA--VD 265 (357)
T ss_pred CCCCCCHHHHHHHHHHhCccCCCeEc-------CCC-CccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCC--CC
Confidence 77789999999999999999887764 222 234788999999999999999999999999999998532 00
Q ss_pred ccCCCC-----CchHHHHHHHHHhcCCC
Q psy4398 256 NHYPVE-----KLPKTILYAHCKYKRFE 278 (306)
Q Consensus 256 all~~p-----~~~~~~l~~~~~~~g~~ 278 (306)
.+--++ ...-+.+.++.+++|++
T Consensus 266 ~v~~k~~~~GGi~~~~~i~~~a~~~g~~ 293 (357)
T cd03316 266 IIQPDVTKVGGITEAKKIAALAEAHGVR 293 (357)
T ss_pred EEecCccccCCHHHHHHHHHHHHHcCCe
Confidence 111122 11223677778888887
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-06 Score=76.25 Aligned_cols=131 Identities=25% Similarity=0.311 Sum_probs=92.4
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
|+++++ |+-+|.--=-.|... |+ .-|-+-+++|+. |+++++.+++||+-|++.|. ..-|+.|++.|+|
T Consensus 23 a~iae~aga~avm~le~~p~d~-r~-~ggv~R~~~p~~----I~~I~~~V~iPVig~~kigh-----~~Ea~~L~~~GvD 91 (287)
T TIGR00343 23 AKIAEEAGAVAVMALERVPADI-RA-SGGVARMSDPKM----IKEIMDAVSIPVMAKVRIGH-----FVEAQILEALGVD 91 (287)
T ss_pred HHHHHHcCceEEEeeccCchhh-Hh-cCCeeecCCHHH----HHHHHHhCCCCEEEEeeccH-----HHHHHHHHHcCCC
Confidence 456664 877776533456543 22 234566778876 45556777999999999543 5667788888888
Q ss_pred EEEEcccC-----------------------------------------CCCCCCC------------------------
Q psy4398 199 AIGVHGRT-----------------------------------------KAERPRH------------------------ 213 (306)
Q Consensus 199 ~i~v~~~~-----------------------------------------~~~~~~~------------------------ 213 (306)
.|.-+.+. ....|.+
T Consensus 92 iIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~ 171 (287)
T TIGR00343 92 YIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLE 171 (287)
T ss_pred EEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccc
Confidence 88643321 0001111
Q ss_pred -----------CCcHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhh---hhhccccCC--CC
Q psy4398 214 -----------RNRIEMIRTLTQHLKIPVI--ANGGSKEIVDYGGVFSLN---CAFLRNHYP--VE 261 (306)
Q Consensus 214 -----------p~~~~~v~~i~~~~~ipvi--a~GGI~s~~~~~~~l~~~---v~vGrall~--~p 261 (306)
...+++++++++..++||+ +.|||.|++++..+++.| +.+|++++. ||
T Consensus 172 ~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP 237 (287)
T TIGR00343 172 EEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNP 237 (287)
T ss_pred hhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCH
Confidence 2478899999999899998 999999999999999975 599999985 55
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-06 Score=77.06 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccC----------ChHHHHHHHHHHHhcccccEEE--Eec
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLS----------TPDIACNILTTLISNLSIPVSC--KIR 177 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~----------~~~~~~eiv~~v~~~~~~pv~v--Kir 177 (306)
.+.+.+.+.++.+++ |+|.+||++ |.+....|+ -.+.+ +.+...++++.+|+..++|+.+ +..
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~DG--~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n 86 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVADG--PVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN 86 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 466889999998875 999999997 544433332 22211 2357889999999877788655 444
Q ss_pred cCCChHH-HHHHHHHHHHcCCcEEEEccc--------------------------CC--------------------CCC
Q psy4398 178 VFHNEAD-TIALCKRLEACGIIAIGVHGR--------------------------TK--------------------AER 210 (306)
Q Consensus 178 ~g~~~~~-~~~~a~~l~~~G~d~i~v~~~--------------------------~~--------------------~~~ 210 (306)
+-... ..++++.+.++|+|++++++- +. .+.
T Consensus 87 --~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~ 164 (242)
T cd04724 87 --PILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGV 164 (242)
T ss_pred --HHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCC
Confidence 21111 356677777777777776221 00 000
Q ss_pred C-----CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccCC
Q psy4398 211 P-----RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYP 259 (306)
Q Consensus 211 ~-----~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~ 259 (306)
. ..+...+.++++++..++||+.-|||++.++++++.+. ++.+|+++++
T Consensus 165 tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~ADgvVvGSaiv~ 220 (242)
T cd04724 165 TGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKYADGVIVGSALVK 220 (242)
T ss_pred CCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHccCCEEEECHHHHH
Confidence 0 01223578899999889999999999999999998875 6699998863
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.50 E-value=3e-05 Score=67.78 Aligned_cols=204 Identities=16% Similarity=0.136 Sum_probs=120.3
Q ss_pred cccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhh-hhhcccccccccCCCCCceeeecCCCCC
Q psy4398 23 NQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTER-KVNDLLNTIDFVDPLDGSVVFRTCPREK 101 (306)
Q Consensus 23 ~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (306)
+|+|.+|+.|+++-.+--.+...++......|+.++..-.-..+. ... ..+. +.+.++..+
T Consensus 1 ki~g~~f~SRL~lGTgky~s~~~m~~ai~aSg~evvTvalRR~~~---~~~~~~~~---------------~~~~i~~~~ 62 (247)
T PF05690_consen 1 KIGGKEFRSRLILGTGKYPSPEVMREAIEASGAEVVTVALRRVNL---GSKPGGDN---------------ILDYIDRSG 62 (247)
T ss_dssp -ETTEEES-SEEEE-STSSSHHHHHHHHHHTT-SEEEEECCGSTT---TS-TTCHH---------------CCCCTTCCT
T ss_pred CcCCEEeecceEEecCCCCCHHHHHHHHHHhCCcEEEEEEecccC---CCCCCCcc---------------HHHHhcccC
Confidence 578999999999998885555557776667887776554211110 000 0111 223333346
Q ss_pred CceEEEecC-CCHHHHHHHHHHHhc--CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 102 NKIILQIGT-ADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g-~~~~~~~~aa~~~~~--g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
..+..|-.| .+.++....|+.+.+ +-+-|-|..-- |. -.|+-|+-.+.+-.+.+.+. ++-|..-+.
T Consensus 63 ~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~-------D~--~~L~PD~~etl~Aae~Lv~e-GF~VlPY~~- 131 (247)
T PF05690_consen 63 YTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIG-------DD--KTLLPDPIETLKAAEILVKE-GFVVLPYCT- 131 (247)
T ss_dssp SEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS--------T--TT--B-HHHHHHHHHHHHHT-T-EEEEEE--
T ss_pred CEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeC-------CC--CCcCCChhHHHHHHHHHHHC-CCEEeecCC-
Confidence 667777654 689999999998876 67776664321 11 13445555544444444332 677777777
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
+| .-+|++|++.||..|---+-.. +.-.|..+...++.+.+..++|||.-+||.++.|+.++++.|. .+.+
T Consensus 132 -~D----~v~akrL~d~GcaavMPlgsPI-GSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 132 -DD----PVLAKRLEDAGCAAVMPLGSPI-GSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp -S-----HHHHHHHHHTT-SEBEEBSSST-TT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred -CC----HHHHHHHHHCCCCEEEeccccc-ccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 44 5689999999999987544322 2223345678889999999999999999999999999999864 6666
Q ss_pred ccC--CCC
Q psy4398 256 NHY--PVE 261 (306)
Q Consensus 256 all--~~p 261 (306)
++- .||
T Consensus 206 AiA~A~dP 213 (247)
T PF05690_consen 206 AIAKAKDP 213 (247)
T ss_dssp HHHTSSSH
T ss_pred HHhccCCH
Confidence 653 366
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=68.63 Aligned_cols=137 Identities=12% Similarity=0.161 Sum_probs=103.0
Q ss_pred CCceEEEecCCC----HHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEE
Q psy4398 101 KNKIILQIGTAD----PERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVS 173 (306)
Q Consensus 101 ~~p~ivql~g~~----~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~ 173 (306)
..|+++++...+ .++..+.++.+.+ |+|++.+.. |. +.....+.+.+.+.++++.+.+ ++|+.
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~pv~ 117 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NI--------GSLKEGDWEEVLEEIAAVVEAADGGLPLK 117 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cH--------HHHhCCCHHHHHHHHHHHHHHhcCCceEE
Confidence 468999998887 7788888887765 999999842 11 1111124678888888888874 89999
Q ss_pred EEeccCC--ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q psy4398 174 CKIRVFH--NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 174 vKir~g~--~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~ 249 (306)
++...+. +.+...++++.+.+.|+++|..+.... .+..+++.++++++.+ ++|++..||+.+.+.+.+.+..
T Consensus 118 iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~ 193 (201)
T cd00945 118 VILETRGLKTADEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEA 193 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHh
Confidence 9998643 456678888888899999998764321 1234788889999888 6799999999988888888876
Q ss_pred hh
Q psy4398 250 NC 251 (306)
Q Consensus 250 ~v 251 (306)
|+
T Consensus 194 Ga 195 (201)
T cd00945 194 GA 195 (201)
T ss_pred cc
Confidence 53
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=8e-07 Score=78.73 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=92.3
Q ss_pred EEecC--CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec---c-C
Q psy4398 106 LQIGT--ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR---V-F 179 (306)
Q Consensus 106 vql~g--~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir---~-g 179 (306)
+|+.| .+.++.. +..+.|++.+-++ +... +|+++.++.+.+.+ +-+.+++|-. . |
T Consensus 76 v~~gGGIrs~edv~---~l~~~G~~~vivG--------------taa~-~~~~l~~~~~~~g~-ivvslD~~~g~v~~~g 136 (228)
T PRK04128 76 VQVGGGLRTYESIK---DAYEIGVENVIIG--------------TKAF-DLEFLEKVTSEFEG-ITVSLDVKGGRIAVKG 136 (228)
T ss_pred EEEcCCCCCHHHHH---HHHHCCCCEEEEC--------------chhc-CHHHHHHHHHHcCC-EEEEEEccCCeEecCC
Confidence 45543 3444444 4445699998773 3344 79999999888743 4444555322 1 3
Q ss_pred CCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHh---hhh
Q psy4398 180 HNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH-LKIPVIANGGSKEIVDYGGVFSL---NCA 252 (306)
Q Consensus 180 ~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~-~~ipvia~GGI~s~~~~~~~l~~---~v~ 252 (306)
|.. -+..++++.+++. +..+.++...+++...++. .+.+. .++|||++|||+|.+|..++.+. ++.
T Consensus 137 w~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d------~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gvi 209 (228)
T PRK04128 137 WLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE------EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVI 209 (228)
T ss_pred CeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHH------HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 422 2367888888888 9999999999999888863 33333 48999999999999999999886 459
Q ss_pred hccccCCCC
Q psy4398 253 FLRNHYPVE 261 (306)
Q Consensus 253 vGrall~~p 261 (306)
+|+++|.+-
T Consensus 210 vg~al~~g~ 218 (228)
T PRK04128 210 IGKALYEGR 218 (228)
T ss_pred EEhhhhcCC
Confidence 999999764
|
|
| >KOG0538|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-05 Score=69.97 Aligned_cols=208 Identities=16% Similarity=0.141 Sum_probs=125.9
Q ss_pred ccccccccccCCceEEccCC-----CC-CCHHHHHHHHHcCCCEEEecceec--hhhhhhhhhhhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMV-----RM-NTLPFRLLALDYGADLVYSEELVD--HKLVKTERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~-----~~-t~~~~r~~~~~~G~g~~~te~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (306)
+++++-|-++.-||++||-. .+ .+..-...+...|...+++-..+. +++.
T Consensus 58 ~sTtvlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~---------------------- 115 (363)
T KOG0538|consen 58 TSTTVLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSVEDIA---------------------- 115 (363)
T ss_pred ccceeccccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHH----------------------
Confidence 78888899999999999954 22 222333334455555555543221 1111
Q ss_pred eeeecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCC----------------c----ccccc------
Q psy4398 92 VVFRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCP----------------K----QFSLT------ 143 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP----------------~----~~~~~------ 143 (306)
.+.+ +.--..||. ..+.+--.+..++++. ||.++-+..-.| . .|...
T Consensus 116 ---~aap--~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v 190 (363)
T KOG0538|consen 116 ---SAAP--PGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEV 190 (363)
T ss_pred ---hhCC--CCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccC
Confidence 1111 112344554 3444555666778875 888877743322 2 00000
Q ss_pred -C-------CccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q psy4398 144 -G-------GMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN 215 (306)
Q Consensus 144 -~-------~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~ 215 (306)
. .|.+.. -++.+-=+=++.++..+..|+.+|== .+ .+=|+.+.++|+++|+++.-...+.-..|+
T Consensus 191 ~~~~~sg~~~~~~~~-id~Sl~W~Di~wLr~~T~LPIvvKGi--lt----~eDA~~Ave~G~~GIIVSNHGgRQlD~vpA 263 (363)
T KOG0538|consen 191 EEAGDSGLAAYVSSQ-IDPSLSWKDIKWLRSITKLPIVVKGV--LT----GEDARKAVEAGVAGIIVSNHGGRQLDYVPA 263 (363)
T ss_pred CcccchhhhhhhhcC-CCCCCChhhhHHHHhcCcCCeEEEee--cc----cHHHHHHHHhCCceEEEeCCCccccCcccc
Confidence 0 011110 12222224457777778899999844 22 233556678999999996532222223467
Q ss_pred cHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 216 RIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 216 ~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
..+.+.++.+++ ++||..-|||++..|.-+++..| +-+||+++++-
T Consensus 264 tI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gL 314 (363)
T KOG0538|consen 264 TIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGL 314 (363)
T ss_pred hHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheee
Confidence 889999999999 79999999999988888888764 59999987754
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.8e-07 Score=79.24 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+++.|+|.+++++.+.... ..+.++++++++++.+++|+++.|||+|+++++++++.++ .+|++++.
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~-~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG-GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcccc-CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 4688999999999999999998765321 2356899999999999999999999999999999999765 89999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
+|.+.+.
T Consensus 108 dp~~~~~ 114 (234)
T cd04732 108 NPELVKE 114 (234)
T ss_pred ChHHHHH
Confidence 8855443
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-05 Score=69.26 Aligned_cols=120 Identities=15% Similarity=0.111 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC-------------
Q psy4398 114 ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF------------- 179 (306)
Q Consensus 114 ~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g------------- 179 (306)
+++.+.++.+.+ |.|+|++ |++..-+.+.+.++++++|+.+++|+.+-.+..
T Consensus 11 e~~~~ia~~v~~~gtDaI~V--------------GGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~~ 76 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMV--------------GGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSRYADAVFFM 76 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEE--------------cCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCcCCCEEEEE
Confidence 445556665654 8999998 333334677788888888887778877643310
Q ss_pred ------------------------------------------------------CChHHHHHHHHHHHHcCCcEEEEccc
Q psy4398 180 ------------------------------------------------------HNEADTIALCKRLEACGIIAIGVHGR 205 (306)
Q Consensus 180 ------------------------------------------------------~~~~~~~~~a~~l~~~G~d~i~v~~~ 205 (306)
.++++....+..++..|++.+++...
T Consensus 77 sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~ 156 (205)
T TIGR01769 77 SLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAG 156 (205)
T ss_pred EeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 01234555666666666666665332
Q ss_pred CCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 206 ~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
+. ...+.+.++++++++.+++|++..|||+|.++++++++.+
T Consensus 157 sG---a~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~G 198 (205)
T TIGR01769 157 SG---ASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAG 198 (205)
T ss_pred CC---CCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcC
Confidence 11 1234578999999999999999999999999999998764
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=77.90 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
.+..++++.+++.|++.+++++....+... +.+++.++++++.+++||++.|||++.++++++++.+ +.+|++++.
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~-~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGR-EPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCC-CCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 368999999999999999999887754443 4589999999999999999999999999999988875 599999999
Q ss_pred CCCchHHHHHHH
Q psy4398 260 VEKLPKTILYAH 271 (306)
Q Consensus 260 ~p~~~~~~l~~~ 271 (306)
+|.+.+...+.|
T Consensus 109 ~~~~~~~~~~~~ 120 (232)
T TIGR03572 109 NPDLIEEAARRF 120 (232)
T ss_pred CHHHHHHHHHHc
Confidence 986554444333
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.4e-05 Score=70.48 Aligned_cols=145 Identities=15% Similarity=0.121 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCc------ccccc--CChHHHHHHHHHHHhc-ccccEEEEeccCC
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGM------GAALL--STPDIACNILTTLISN-LSIPVSCKIRVFH 180 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~------G~~l~--~~~~~~~eiv~~v~~~-~~~pv~vKir~g~ 180 (306)
.+.+.+.++++.+. .|+|.|||-+. .+....||- --++. -+.+.+.++++++++. .++|+..=.- .
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iElGiP--fsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y--~ 96 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALELGVP--FSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTY--Y 96 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCC--CCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEe--c
Confidence 46778888888665 59999999543 222222210 00111 2456788899999876 6888653322 2
Q ss_pred Ch--H-HHHHHHHHHHHcCCcEEEEcccC--------------------------C-----------C--------CCCC
Q psy4398 181 NE--A-DTIALCKRLEACGIIAIGVHGRT--------------------------K-----------A--------ERPR 212 (306)
Q Consensus 181 ~~--~-~~~~~a~~l~~~G~d~i~v~~~~--------------------------~-----------~--------~~~~ 212 (306)
++ . ...++++.+.++|+|++++|+-. . . .+..
T Consensus 97 Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~T 176 (256)
T TIGR00262 97 NLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVT 176 (256)
T ss_pred cHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 22 1 24567777788888888775421 0 0 0111
Q ss_pred ------CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCC
Q psy4398 213 ------HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYP 259 (306)
Q Consensus 213 ------~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~ 259 (306)
.+...+.++++++.++.||+.-|||+|.++++++.+. ++.+|++++.
T Consensus 177 G~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 177 GARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred CCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 1234788999999999999999999999999999886 4599999874
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.1e-05 Score=68.63 Aligned_cols=153 Identities=13% Similarity=0.148 Sum_probs=111.1
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEec
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIR 177 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir 177 (306)
..|+..++...+++++.+.++... .||..+-++++- +++.-.+.++++|+.++ .++.+...
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~----------------~~~~d~~~v~~vr~~~g~~~~l~vDan 137 (265)
T cd03315 74 RVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGR----------------DPARDVAVVAALREAVGDDAELRVDAN 137 (265)
T ss_pred ceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecCC----------------CHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 356666776677888877777654 599999997651 23555678889988874 56666666
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhcccc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNH 257 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGral 257 (306)
.+|+.+++.++++.+++.|+++|.- +. .+.+++..+++++.+++||++.+.+.+..+++++++... ...+
T Consensus 138 ~~~~~~~a~~~~~~l~~~~i~~iEe-------P~-~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~--~d~v 207 (265)
T cd03315 138 RGWTPKQAIRALRALEDLGLDYVEQ-------PL-PADDLEGRAALARATDTPIMADESAFTPHDAFRELALGA--ADAV 207 (265)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEC-------CC-CcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCC--CCEE
Confidence 6799999999999999999988842 22 235788999999999999999999999999999887532 0011
Q ss_pred CCCC-Cc----hHHHHHHHHHhcCCCC
Q psy4398 258 YPVE-KL----PKTILYAHCKYKRFEV 279 (306)
Q Consensus 258 l~~p-~~----~~~~l~~~~~~~g~~~ 279 (306)
.-+| .+ .-..+.++.+++|++.
T Consensus 208 ~~k~~~~GGi~~~~~~~~~A~~~gi~~ 234 (265)
T cd03315 208 NIKTAKTGGLTKAQRVLAVAEALGLPV 234 (265)
T ss_pred EEecccccCHHHHHHHHHHHHHcCCcE
Confidence 1233 11 2236677788888873
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-05 Score=77.51 Aligned_cols=127 Identities=16% Similarity=0.090 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a 189 (306)
..++.+.++...++.|+|.|+++....+ ...+.+.++.+++.. +.||.++-- . +.+-+
T Consensus 221 ~~~~~~~r~~~L~~aG~d~I~vd~a~g~---------------~~~~~~~i~~i~~~~~~~~vi~G~v--~----t~~~a 279 (450)
T TIGR01302 221 TREFDKERAEALVKAGVDVIVIDSSHGH---------------SIYVIDSIKEIKKTYPDLDIIAGNV--A----TAEQA 279 (450)
T ss_pred CchhHHHHHHHHHHhCCCEEEEECCCCc---------------HhHHHHHHHHHHHhCCCCCEEEEeC--C----CHHHH
Confidence 3456677777777789999999876532 245678889998874 788888544 2 35666
Q ss_pred HHHHHcCCcEEEEc--cc----CCCCCCCCCCcHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhhh---hhcccc
Q psy4398 190 KRLEACGIIAIGVH--GR----TKAERPRHRNRIEMIRTLTQ---HLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 190 ~~l~~~G~d~i~v~--~~----~~~~~~~~p~~~~~v~~i~~---~~~ipvia~GGI~s~~~~~~~l~~~v---~vGral 257 (306)
+.+.++|+|+|.+. +. ++.-...+.+.+..+.++++ ..++|||+.|||.+..|+.++++.|+ ++|+++
T Consensus 280 ~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~ 359 (450)
T TIGR01302 280 KALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLL 359 (450)
T ss_pred HHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 77788999999864 11 11111123335566555544 45899999999999999999999865 999886
Q ss_pred C
Q psy4398 258 Y 258 (306)
Q Consensus 258 l 258 (306)
-
T Consensus 360 a 360 (450)
T TIGR01302 360 A 360 (450)
T ss_pred h
Confidence 4
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-05 Score=77.87 Aligned_cols=128 Identities=12% Similarity=0.128 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEE-eccCCChHHHHH
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCK-IRVFHNEADTIA 187 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vK-ir~g~~~~~~~~ 187 (306)
|..++.+..+...+++|+|.|-+..+ + .+...+.+.++.+|+.. +.+|.++ +. +.+
T Consensus 244 g~~~~~~~r~~~l~~ag~d~i~iD~~--~-------------g~~~~~~~~i~~ik~~~p~~~vi~g~v~-------t~e 301 (505)
T PLN02274 244 GTRESDKERLEHLVKAGVDVVVLDSS--Q-------------GDSIYQLEMIKYIKKTYPELDVIGGNVV-------TMY 301 (505)
T ss_pred cCCccHHHHHHHHHHcCCCEEEEeCC--C-------------CCcHHHHHHHHHHHHhCCCCcEEEecCC-------CHH
Confidence 44566777777777889999988753 2 12345567889999877 4777765 44 456
Q ss_pred HHHHHHHcCCcEEEEc--cc----CCCC---CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 188 LCKRLEACGIIAIGVH--GR----TKAE---RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~--~~----~~~~---~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
-++.+.++|+|+|.+. .. ++.. .......+..+.++.+..++|||+-|||.+..++.+++..|+ ++|+
T Consensus 302 ~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vGs 381 (505)
T PLN02274 302 QAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMGS 381 (505)
T ss_pred HHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEch
Confidence 6788888999999874 22 2111 111123566788888888999999999999999999999864 9999
Q ss_pred ccCC
Q psy4398 256 NHYP 259 (306)
Q Consensus 256 all~ 259 (306)
++..
T Consensus 382 ~~~~ 385 (505)
T PLN02274 382 FLAG 385 (505)
T ss_pred hhcc
Confidence 8764
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0002 Score=63.42 Aligned_cols=206 Identities=16% Similarity=0.124 Sum_probs=128.1
Q ss_pred cccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCC
Q psy4398 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPRE 100 (306)
Q Consensus 21 ~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (306)
+.+|+|.+|.+|+++-.+--.+...+.......|+.++..-.-..+. ........++ +.++..
T Consensus 7 ~l~i~g~~f~SRL~lGTgky~s~~~~~~ai~aSg~evvTvalRR~~~--~~~~~~~~~l---------------~~i~~~ 69 (267)
T CHL00162 7 KLKIGNKSFNSRLMLGTGKYKSLKDAIQSIEASGCEIVTVAIRRLNN--NLLNDNSNLL---------------NGLDWN 69 (267)
T ss_pred ceEECCEEeecceEEecCCCCCHHHHHHHHHHhCCcEEEEEEEEecc--CcCCCcchHH---------------Hhhchh
Confidence 57899999999999988875455556666667887766554211110 0000001111 111112
Q ss_pred CCceEEEe-cCCCHHHHHHHHHHHhc-C-------CCEEEEcc-CCCccccccCCccccccCChHHHHHHHHHHHhcccc
Q psy4398 101 KNKIILQI-GTADPERALEAAKKVEH-D-------VAAIDINM-GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI 170 (306)
Q Consensus 101 ~~p~ivql-~g~~~~~~~~aa~~~~~-g-------~d~veln~-gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~ 170 (306)
+..+..|- ++.+.++....|+.+.+ + -+-|-|.. +-|. .++-|+-.+.+..+.+.+. ++
T Consensus 70 ~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~----------~LlPD~~etl~Aae~Lv~e-GF 138 (267)
T CHL00162 70 KLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPK----------YLLPDPIGTLKAAEFLVKK-GF 138 (267)
T ss_pred ccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCc----------ccCCChHHHHHHHHHHHHC-CC
Confidence 22344443 35688888888887765 3 34444431 2221 3455555545544444332 56
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
-|..-+. +| .-+|++|++.||..|---+-.. +.-.+..+...++.|.+..++|||.-+||.+++|+..+++.|
T Consensus 139 ~VlPY~~--~D----~v~a~rLed~Gc~aVMPlgsPI-GSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElG 211 (267)
T CHL00162 139 TVLPYIN--AD----PMLAKHLEDIGCATVMPLGSPI-GSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELG 211 (267)
T ss_pred EEeecCC--CC----HHHHHHHHHcCCeEEeeccCcc-cCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcC
Confidence 6776666 44 4689999999999986433221 122234466788999999999999999999999999999985
Q ss_pred ---hhhccccCC--CC
Q psy4398 251 ---CAFLRNHYP--VE 261 (306)
Q Consensus 251 ---v~vGrall~--~p 261 (306)
+.+.+++.. ||
T Consensus 212 aDgVL~nSaIakA~dP 227 (267)
T CHL00162 212 ASGVLLNTAVAQAKNP 227 (267)
T ss_pred CCEEeecceeecCCCH
Confidence 477788764 55
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-05 Score=68.25 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=101.9
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEE-ccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDI-NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~vel-n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~ 178 (306)
+-|+.++ +-+|+.|..+ +++|+|.||| |+-|=+. ....-..+.+.++.++.|+-+ +++++|-+.-
T Consensus 61 ~lPICVS--aVep~~f~~a---V~AGAdliEIGNfDsFY~--------qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPH 127 (242)
T PF04481_consen 61 NLPICVS--AVEPELFVAA---VKAGADLIEIGNFDSFYA--------QGRRFSAEEVLALTRETRSLLPDITLSVTVPH 127 (242)
T ss_pred CCCeEee--cCCHHHHHHH---HHhCCCEEEecchHHHHh--------cCCeecHHHHHHHHHHHHHhCCCCceEEecCc
Confidence 4566665 4577777654 4579999999 5444221 111134677888888888877 6888888875
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---------CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH---------RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---------p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
-...++-+++|..|++.|+|.|.-.|.+....... .+.+...+.|.+.+++||+..-|+.+..- --++.+
T Consensus 128 iL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~-PmAiaa 206 (242)
T PF04481_consen 128 ILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTA-PMAIAA 206 (242)
T ss_pred cccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhH-HHHHHc
Confidence 55677889999999999999999877665433211 12567788999999999999999876543 333333
Q ss_pred ---hhhhcccc
Q psy4398 250 ---NCAFLRNH 257 (306)
Q Consensus 250 ---~v~vGral 257 (306)
|+.+|+++
T Consensus 207 GAsGVGVGSav 217 (242)
T PF04481_consen 207 GASGVGVGSAV 217 (242)
T ss_pred CCcccchhHHh
Confidence 67999987
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00011 Score=66.20 Aligned_cols=122 Identities=13% Similarity=0.169 Sum_probs=79.0
Q ss_pred HHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc---ccccEEEEec-----cC-CChHHHHHHH
Q psy4398 119 AAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN---LSIPVSCKIR-----VF-HNEADTIALC 189 (306)
Q Consensus 119 aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~---~~~pv~vKir-----~g-~~~~~~~~~a 189 (306)
+.+.++.|+|+|++-.- .|. ..+.+.+ +.++++++. .+.|+.+..- .+ .+.+...+.+
T Consensus 96 v~~al~~Ga~~v~~~~~----------~g~--~~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~ 162 (258)
T TIGR01949 96 VEDAIRMGADAVSIHVN----------VGS--DTEWEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAA 162 (258)
T ss_pred HHHHHHCCCCEEEEEEe----------cCC--chHHHHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHH
Confidence 33445569999888422 121 1122333 445555544 3788887433 11 2233455557
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC--CHHH----HHHHHHh---hhhhccccCCC
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK--EIVD----YGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~--s~~~----~~~~l~~---~v~vGrall~~ 260 (306)
+.+.+.|+|+|-+. + +..++.++++.+..++||++.|||+ |.++ +.++++. |+++||+++..
T Consensus 163 ~~a~~~GADyikt~-------~--~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 163 RLGAELGADIVKTP-------Y--TGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHCCCEEecc-------C--CCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 88889999999864 1 1367889999988899999999999 6444 4555565 45999999876
Q ss_pred CC
Q psy4398 261 EK 262 (306)
Q Consensus 261 p~ 262 (306)
+.
T Consensus 234 ~d 235 (258)
T TIGR01949 234 DD 235 (258)
T ss_pred CC
Confidence 54
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-05 Score=70.86 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccC----------ChHHHHHHHHHHH-hcccccEEEEecc
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLS----------TPDIACNILTTLI-SNLSIPVSCKIRV 178 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~----------~~~~~~eiv~~v~-~~~~~pv~vKir~ 178 (306)
.+.+.+.++++.+. .|+|.|||-+.- +....| |-.+.+ +.+.+.++++++| +..++|+.+-.-
T Consensus 23 P~~~~~~~~~~~l~~~Gad~iElGiPf--SDP~aD--GpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y- 97 (258)
T PRK13111 23 PDLETSLEIIKALVEAGADIIELGIPF--SDPVAD--GPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTY- 97 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC--CCCccc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEec-
Confidence 46788888888665 599999996542 222222 112211 4566788899998 546788654332
Q ss_pred CCCh--H-HHHHHHHHHHHcCCcEEEEcc--------------------------cCC----------CCC---------
Q psy4398 179 FHNE--A-DTIALCKRLEACGIIAIGVHG--------------------------RTK----------AER--------- 210 (306)
Q Consensus 179 g~~~--~-~~~~~a~~l~~~G~d~i~v~~--------------------------~~~----------~~~--------- 210 (306)
+++ . ...++++.+.++|+|++++.+ .+. ...
T Consensus 98 -~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~G 176 (258)
T PRK13111 98 -YNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAG 176 (258)
T ss_pred -ccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCC
Confidence 221 1 234566666666666666532 110 000
Q ss_pred C-----CCCCc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccCC
Q psy4398 211 P-----RHRNR-IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYP 259 (306)
Q Consensus 211 ~-----~~p~~-~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~ 259 (306)
. ..+.. .+.++++++.+++||+..+||.+.+++.++.+. ++.+|+++.+
T Consensus 177 vTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~ADGviVGSaiv~ 233 (258)
T PRK13111 177 VTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAVADGVIVGSALVK 233 (258)
T ss_pred CCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCCEEEEcHHHHH
Confidence 0 11223 458999999999999999999999999998874 7799999863
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.4e-06 Score=74.16 Aligned_cols=84 Identities=15% Similarity=0.256 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
..+.+++|+...+.|+|.|++-+.+....-. ...+++++++++.+.+|+...|||+|++|++.++.+|+ ++.++.+
T Consensus 29 ~GDpVelA~~Y~e~GADElvFlDItAs~~gr-~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv 107 (256)
T COG0107 29 AGDPVELAKRYNEEGADELVFLDITASSEGR-ETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAV 107 (256)
T ss_pred cCChHHHHHHHHHcCCCeEEEEecccccccc-hhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHh
Confidence 3468999999999999999986665432222 34889999999999999999999999999999999986 9999999
Q ss_pred CCCCchHH
Q psy4398 259 PVEKLPKT 266 (306)
Q Consensus 259 ~~p~~~~~ 266 (306)
.||.+...
T Consensus 108 ~~p~lI~~ 115 (256)
T COG0107 108 KDPELITE 115 (256)
T ss_pred cChHHHHH
Confidence 99965543
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.3e-06 Score=74.81 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++++.+++.|++.+++.+...... ..+.+++.++++++.+++||++.|||+|.++++.+++.|+ .+|++++.+
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~-g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~ 109 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKA-GKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKN 109 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc-CCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhC
Confidence 688999999999999999988643211 1246899999999999999999999999999999998754 999999998
Q ss_pred CCchH
Q psy4398 261 EKLPK 265 (306)
Q Consensus 261 p~~~~ 265 (306)
|.+.+
T Consensus 110 ~~~l~ 114 (233)
T PRK00748 110 PELVK 114 (233)
T ss_pred HHHHH
Confidence 84443
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.3e-05 Score=67.75 Aligned_cols=132 Identities=12% Similarity=0.118 Sum_probs=88.6
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
+.|+++.=+..++. ++....+.|+|+|-+... .. .++.+.++++..+. .+....+-+.
T Consensus 72 ~iPi~~~~~i~~~~---~v~~~~~~Gad~v~l~~~--------------~~-~~~~~~~~~~~~~~-~g~~~~v~v~--- 129 (217)
T cd00331 72 SLPVLRKDFIIDPY---QIYEARAAGADAVLLIVA--------------AL-DDEQLKELYELARE-LGMEVLVEVH--- 129 (217)
T ss_pred CCCEEECCeecCHH---HHHHHHHcCCCEEEEeec--------------cC-CHHHHHHHHHHHHH-cCCeEEEEEC---
Confidence 35666542233442 233333469999988421 11 23566777776644 4655555555
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh---hhhhcc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL---NCAFLR 255 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~---~v~vGr 255 (306)
+.++ ++.+.+.|++.+.+++++... . +.+++.+.++++.+ ++|+++.|||.+++++.++++. ++.+|+
T Consensus 130 ~~~e----~~~~~~~g~~~i~~t~~~~~~--~-~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGs 202 (217)
T cd00331 130 DEEE----LERALALGAKIIGINNRDLKT--F-EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGE 202 (217)
T ss_pred CHHH----HHHHHHcCCCEEEEeCCCccc--c-CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECH
Confidence 2222 566677999999999665322 2 34678899999884 7999999999999999999987 459999
Q ss_pred ccCCCC
Q psy4398 256 NHYPVE 261 (306)
Q Consensus 256 all~~p 261 (306)
+++..+
T Consensus 203 ai~~~~ 208 (217)
T cd00331 203 SLMRAP 208 (217)
T ss_pred HHcCCC
Confidence 998644
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-05 Score=68.19 Aligned_cols=137 Identities=17% Similarity=0.152 Sum_probs=88.5
Q ss_pred EEecCCCHHHHHHHHHHHhc-CCCEEEEccC-CCccccccCCccccccCChHHHHHHHHHHHhcccccE--EEEeccCCC
Q psy4398 106 LQIGTADPERALEAAKKVEH-DVAAIDINMG-CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV--SCKIRVFHN 181 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~-g~d~veln~g-cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv--~vKir~g~~ 181 (306)
++|...+++.+.+.++.+.+ |+|.|++-+. +|. ..+.....++++++++....|+ .++.. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~------------~~~~~~~~~~v~~i~~~~~~~v~v~lm~~---~ 67 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHF------------VPNLTFGPPVLEALRKYTDLPIDVHLMVE---N 67 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC------------CCCcccCHHHHHHHHhcCCCcEEEEeeeC---C
Confidence 56778888899999998875 9999999632 111 1122244566777776556664 35555 2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCC-------------------------------------C--------CCCCC---
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTK-------------------------------------A--------ERPRH--- 213 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~-------------------------------------~--------~~~~~--- 213 (306)
..++++.+.++|+|++++|+... + ....+
T Consensus 68 ---~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~ 144 (210)
T TIGR01163 68 ---PDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKF 144 (210)
T ss_pred ---HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccc
Confidence 34567777788888888775320 0 00011
Q ss_pred -CCcHHHHHHHHhhCC-----CcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 214 -RNRIEMIRTLTQHLK-----IPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 214 -p~~~~~v~~i~~~~~-----ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
+..++.++++++.++ +|+++.|||+ .+++.++++.+ +.+||+++..+
T Consensus 145 ~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~~ 200 (210)
T TIGR01163 145 IPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGAD 200 (210)
T ss_pred cHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCCC
Confidence 112344555655543 7999999996 79999988865 49999998654
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.5e-05 Score=66.10 Aligned_cols=127 Identities=12% Similarity=0.164 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccC-CChHHHHHHHHHH
Q psy4398 115 RALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVF-HNEADTIALCKRL 192 (306)
Q Consensus 115 ~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g-~~~~~~~~~a~~l 192 (306)
...++...++.|+|.|++-+. +|.....+.+.+.+-+.++++.+ +.|+-|-+-.+ .+.++....++.+
T Consensus 72 K~~E~~~Av~~GAdEiDvv~n----------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia 141 (211)
T TIGR00126 72 KLYETKEAIKYGADEVDMVIN----------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEIC 141 (211)
T ss_pred HHHHHHHHHHcCCCEEEeecc----------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 445555555679999998543 33333356677777778887766 45555533333 3446678999999
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
.++|+|+|-.+.. ...+.+..+.++.+++.+ ++||-++|||+|.+++.++++.|+ -+|+
T Consensus 142 ~eaGADfvKTsTG----f~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 142 IDAGADFVKTSTG----FGAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred HHhCCCEEEeCCC----CCCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 9999999976422 112335566666666666 699999999999999999998876 5555
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.3e-06 Score=75.53 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+.+.|++.|++.+-...+...+ .+++.++++.+.+++||++.|||++.+++++++..++ .+|++++.
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~-~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGSE-PNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCCc-ccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 3689999999999999999998876655444 4999999999999999999999999999999998654 88999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
+|.+.+.
T Consensus 109 ~~~~~~~ 115 (258)
T PRK01033 109 DPDLITE 115 (258)
T ss_pred CHHHHHH
Confidence 9844433
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.4e-06 Score=74.70 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++|+.+.+.|++.|++-+-.... ....+++.++++.+.+++||...|||+|.++++.++..|+ .+|++++.|
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF--GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC--CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 67899999999999999987665432 2345889999999999999999999999999999999876 899999999
Q ss_pred CCchHHHHHHH
Q psy4398 261 EKLPKTILYAH 271 (306)
Q Consensus 261 p~~~~~~l~~~ 271 (306)
|.+.+...+.+
T Consensus 111 p~l~~~i~~~~ 121 (241)
T PRK14024 111 PEWCARVIAEH 121 (241)
T ss_pred HHHHHHHHHHh
Confidence 96555444444
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00032 Score=62.29 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=62.8
Q ss_pred ccccEEEEecc-C------CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCC--C
Q psy4398 168 LSIPVSCKIRV-F------HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS--K 238 (306)
Q Consensus 168 ~~~pv~vKir~-g------~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI--~ 238 (306)
.++|+++-... | .+.++....++.+.+.|+|+|-+.. +.+++.++++.+.+++||++.||+ .
T Consensus 121 ~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~---------~~~~~~~~~i~~~~~~pvv~~GG~~~~ 191 (235)
T cd00958 121 YGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY---------TGDAESFKEVVEGCPVPVVIAGGPKKD 191 (235)
T ss_pred cCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC---------CCCHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 47888875542 1 1234445558888899999998842 226788999999999999999997 5
Q ss_pred CHHH----HHHHHHhh---hhhccccCCCCC
Q psy4398 239 EIVD----YGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 239 s~~~----~~~~l~~~---v~vGrall~~p~ 262 (306)
|.++ ++++++.| +.+||+++..+.
T Consensus 192 ~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 192 SEEEFLKMVYDAMEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred CHHHHHHHHHHHHHcCCcEEEechhhhcCCC
Confidence 6655 66666664 599999997664
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00027 Score=61.33 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=93.0
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
.+++-+.-.+++.+ ++-+.++.|+|.|-+|..+|. ..+.++++.+++ .++++.+-+. +.
T Consensus 54 ~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~~~~~----------------~~~~~~i~~~~~-~g~~~~~~~~---~~ 112 (206)
T TIGR03128 54 KVLADLKTMDAGEY-EAEQAFAAGADIVTVLGVADD----------------ATIKGAVKAAKK-HGKEVQVDLI---NV 112 (206)
T ss_pred EEEEEEeeccchHH-HHHHHHHcCCCEEEEeccCCH----------------HHHHHHHHHHHH-cCCEEEEEec---CC
Confidence 45555533355543 222233469999999865432 334667777765 4888887653 12
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.+..+.++.+.+.|+|++.++.....+.+. +..++.++++++.+. +++...||| +.+++.++++.|+ .+||+++
T Consensus 113 ~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~-~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 113 KDKVKRAKELKELGADYIGVHTGLDEQAKG-QNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred CChHHHHHHHHHcCCCEEEEcCCcCcccCC-CCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhc
Confidence 335556666677899999987543333332 346778888888774 555569999 6899999998754 9999998
Q ss_pred CCCCchHHHHHHH
Q psy4398 259 PVEKLPKTILYAH 271 (306)
Q Consensus 259 ~~p~~~~~~l~~~ 271 (306)
..+. ++..++.+
T Consensus 191 ~~~d-~~~~~~~l 202 (206)
T TIGR03128 191 KAAD-PAEAARQI 202 (206)
T ss_pred CCCC-HHHHHHHH
Confidence 7543 33334443
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00016 Score=62.77 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHH
Q psy4398 112 DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKR 191 (306)
Q Consensus 112 ~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~ 191 (306)
++++..+.+. +.++|+|.||-.- .+ +.++.+++..+.+++..++... ....+.. .
T Consensus 61 ~~~~i~~ia~--~~~~d~Vqlhg~e----------------~~----~~~~~l~~~~~~~~i~~i~~~~--~~~~~~~-~ 115 (203)
T cd00405 61 DLEEILEIAE--ELGLDVVQLHGDE----------------SP----EYCAQLRARLGLPVIKAIRVKD--EEDLEKA-A 115 (203)
T ss_pred CHHHHHHHHH--hcCCCEEEECCCC----------------CH----HHHHHHHhhcCCcEEEEEecCC--hhhHHHh-h
Confidence 4444444333 2388999997221 12 2355666666777774455322 2222222 3
Q ss_pred HHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCC-Cch
Q psy4398 192 LEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVE-KLP 264 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p-~~~ 264 (306)
....|+|++.+...+... ....+.+|+.+++++ .++|+++.||| +++++.++++. ++.+.+++...| ..-
T Consensus 116 ~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd 192 (203)
T cd00405 116 AYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGIKD 192 (203)
T ss_pred hccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCCcC
Confidence 345799999886655432 122356888888776 68999999999 79999988874 569999998877 333
Q ss_pred HHHHHHHHH
Q psy4398 265 KTILYAHCK 273 (306)
Q Consensus 265 ~~~l~~~~~ 273 (306)
..-++++++
T Consensus 193 ~~ki~~~~~ 201 (203)
T cd00405 193 PEKIRAFIE 201 (203)
T ss_pred HHHHHHHHH
Confidence 235555554
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=75.73 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHhcccccEEEE-eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--
Q psy4398 152 STPDIACNILTTLISNLSIPVSCK-IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-- 228 (306)
Q Consensus 152 ~~~~~~~eiv~~v~~~~~~pv~vK-ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-- 228 (306)
.+|....|.+..+++.+..|+.+| +. + ..+ ++.+-+.|+++|.++.-.......++...+.+.+++++++
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~kGV~---~---~~D-~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~ 273 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLKGIL---A---PED-AAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDR 273 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHhCCC---C---HHH-HHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCC
Confidence 344455555555555555555444 22 1 122 3445568999999864322222334567899999999995
Q ss_pred CcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 229 IPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 229 ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
++|++.|||++..|+-+++..|+ .+||+++.
T Consensus 274 ~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~ 307 (360)
T COG1304 274 IEVIADGGIRSGLDVAKALALGADAVGIGRPFLY 307 (360)
T ss_pred eEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHH
Confidence 99999999999999999998754 88988764
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.2e-05 Score=73.95 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=63.8
Q ss_pred CChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCC--------CCCcHHHHHH
Q psy4398 152 STPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR--------HRNRIEMIRT 222 (306)
Q Consensus 152 ~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~--------~p~~~~~v~~ 222 (306)
.+++.+.+.|+.+|+.. +.||.+|+..+...++ ++..+.++|+|.|+|+|........ +.+....+.+
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~---~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~ 261 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRGVED---IAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALAR 261 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHH---HHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHH---HHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHH
Confidence 46888999999999988 8999999997655433 2333788999999998865332221 1112223334
Q ss_pred HHhhC-------CCcEEEecCCCCHHHHHHHHHhhh---hhcccc
Q psy4398 223 LTQHL-------KIPVIANGGSKEIVDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 223 i~~~~-------~ipvia~GGI~s~~~~~~~l~~~v---~vGral 257 (306)
+.+.+ ++.+|+.||+.+..|+-.++..|+ .+||+.
T Consensus 262 a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~ 306 (368)
T PF01645_consen 262 AHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAA 306 (368)
T ss_dssp HHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHH
T ss_pred HHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchh
Confidence 44332 489999999999999988887654 555543
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.3e-05 Score=69.08 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=97.2
Q ss_pred eEEEecC--CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCc------ccccc--CChHHHHHHHHHHHhcccccE
Q psy4398 104 IILQIGT--ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGM------GAALL--STPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 104 ~ivql~g--~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~------G~~l~--~~~~~~~eiv~~v~~~~~~pv 172 (306)
++.=+.. .+.+.+.++++.+. .|+|.|||-+.- +....||- --+|. -+.+.+.++++++|+..++|+
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPf--SDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~ 94 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPY--SDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPI 94 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCC--CCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCE
Confidence 4444433 36678888888665 599999995432 22122210 00111 245677889999987778886
Q ss_pred EEEeccCCCh--H-HHHHHHHHHHHcCCcEEEEcccC--------------------------C----------CCC---
Q psy4398 173 SCKIRVFHNE--A-DTIALCKRLEACGIIAIGVHGRT--------------------------K----------AER--- 210 (306)
Q Consensus 173 ~vKir~g~~~--~-~~~~~a~~l~~~G~d~i~v~~~~--------------------------~----------~~~--- 210 (306)
.+-.- +++ . ...++++.+.++|+|++.+++-. . ...
T Consensus 95 vlm~Y--~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY 172 (263)
T CHL00200 95 VIFTY--YNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIY 172 (263)
T ss_pred EEEec--ccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEE
Confidence 53322 332 1 24567777888888888875421 0 000
Q ss_pred ------CCC-----CC-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccC
Q psy4398 211 ------PRH-----RN-RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHY 258 (306)
Q Consensus 211 ------~~~-----p~-~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall 258 (306)
..| +. -.++++++++.++.||..-+||+++++++++.+. |+.+|++++
T Consensus 173 ~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 173 LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 011 11 2467789999889999999999999999999876 669999984
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00013 Score=63.41 Aligned_cols=124 Identities=14% Similarity=0.199 Sum_probs=81.5
Q ss_pred HHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccC-CChHHHHHHHHHHHH
Q psy4398 117 LEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVF-HNEADTIALCKRLEA 194 (306)
Q Consensus 117 ~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g-~~~~~~~~~a~~l~~ 194 (306)
.++.+.++.|+|.|++.+. +|.....+.+.+.+-+.++++.+ +.|+-+=+-.+ .+.+.....++.+.+
T Consensus 73 ~eve~A~~~GAdevdvv~~----------~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e 142 (203)
T cd00959 73 AEAREAIADGADEIDMVIN----------IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIE 142 (203)
T ss_pred HHHHHHHHcCCCEEEEeec----------HHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 3344444569999999643 23223345566666667776666 45555433333 345678889999999
Q ss_pred cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhc
Q psy4398 195 CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFL 254 (306)
Q Consensus 195 ~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vG 254 (306)
+|+|.|-.+.. ....+..++.++.+++.+ ++||-++|||+|.+++.++++.|+ -+|
T Consensus 143 ~GaD~IKTsTG----~~~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 143 AGADFIKTSTG----FGPGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred hCCCEEEcCCC----CCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 99999987421 122334566666666655 689999999999999988888765 444
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.7e-05 Score=63.20 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCCEEEEccCCCccccccCCccccccCChH-HHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHc
Q psy4398 117 LEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPD-IACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195 (306)
Q Consensus 117 ~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~-~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~ 195 (306)
.+.-..++.|++.|-+...+ -.||+ .+.++++..+ ..+.-+..-++ +.+-+..+.++
T Consensus 89 keVd~L~~~Ga~IIA~DaT~--------------R~RP~~~~~~~i~~~k-~~~~l~MAD~S-------t~ee~l~a~~~ 146 (229)
T COG3010 89 KEVDALAEAGADIIAFDATD--------------RPRPDGDLEELIARIK-YPGQLAMADCS-------TFEEGLNAHKL 146 (229)
T ss_pred HHHHHHHHCCCcEEEeeccc--------------CCCCcchHHHHHHHhh-cCCcEEEeccC-------CHHHHHHHHHc
Confidence 33445566799999887544 23566 6788888843 34666667777 35556667889
Q ss_pred CCcEEE--EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 196 GIIAIG--VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 196 G~d~i~--v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
|+|.|- ++|.+........+++++++++.+ .+++||+-|.++|++.+.++++.|+ .+|+|+=
T Consensus 147 G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAIT 213 (229)
T COG3010 147 GFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAIT 213 (229)
T ss_pred CCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccC
Confidence 999995 667665333222348999999998 7999999999999999999999875 8999865
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=70.93 Aligned_cols=84 Identities=8% Similarity=-0.032 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
..++|+.+++.|++.+|+-+- ..+ +.+.++++.+.+++||...|||++ ++++++++.|+ .+|++++.+|
T Consensus 40 p~~~A~~~~~~Ga~~lHvVDL------g~~-n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~ 111 (253)
T TIGR02129 40 SSYYAKLYKDDGVKGCHVIML------GPN-NDDAAKEALHAYPGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKG 111 (253)
T ss_pred HHHHHHHHHHcCCCEEEEEEC------CCC-cHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCC
Confidence 389999999999999998765 224 889999999999999999999997 99999999876 9999999998
Q ss_pred CchHHHHHHHHHhcC
Q psy4398 262 KLPKTILYAHCKYKR 276 (306)
Q Consensus 262 ~~~~~~l~~~~~~~g 276 (306)
......++++.++.|
T Consensus 112 ~i~~~~~~~i~~~fG 126 (253)
T TIGR02129 112 KFDLKRLKEIVSLVG 126 (253)
T ss_pred CCCHHHHHHHHHHhC
Confidence 655556777888876
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00015 Score=66.17 Aligned_cols=159 Identities=11% Similarity=0.059 Sum_probs=98.0
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 99 REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
+...|+.++|-|.. ++..+.+.++.||+.|.+-.+. ..+.++.+...++++..++ .++|+-..+.-
T Consensus 72 ~~~vpv~lHlDH~~--~~e~i~~Al~~G~tsVm~d~s~-----------~~~~eni~~t~~v~~~a~~-~gv~veaE~gh 137 (281)
T PRK06806 72 QAKVPVAVHFDHGM--TFEKIKEALEIGFTSVMFDGSH-----------LPLEENIQKTKEIVELAKQ-YGATVEAEIGR 137 (281)
T ss_pred HCCCCEEEECCCCC--CHHHHHHHHHcCCCEEEEcCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEeee
Confidence 34678888887653 2333334445689999885332 1233444555555554443 36666544331
Q ss_pred -C----------CChHHHHHHHHHHHHcCCcEEEEcccCCCCCC--CCCCcHHHHHHHHhhCCCcEEEec--CCCCHHHH
Q psy4398 179 -F----------HNEADTIALCKRLEACGIIAIGVHGRTKAERP--RHRNRIEMIRTLTQHLKIPVIANG--GSKEIVDY 243 (306)
Q Consensus 179 -g----------~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--~~p~~~~~v~~i~~~~~ipvia~G--GI~s~~~~ 243 (306)
| ....+..+..+..++.|+|+|-+.-.+.-+.+ ..+.+++.++++++.+++|+++.| ||. .+++
T Consensus 138 lG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~-~e~~ 216 (281)
T PRK06806 138 VGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS-PEDF 216 (281)
T ss_pred ECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC-HHHH
Confidence 2 11123344444445679999998433222222 234689999999999999999999 875 7888
Q ss_pred HHHHHhhh---hhccccCCCCCchHHHHHHHHHhc
Q psy4398 244 GGVFSLNC---AFLRNHYPVEKLPKTILYAHCKYK 275 (306)
Q Consensus 244 ~~~l~~~v---~vGrall~~p~~~~~~l~~~~~~~ 275 (306)
.++++.|+ .+.+++..+ +...+++++++.
T Consensus 217 ~~~i~~G~~kinv~T~i~~a---~~~a~~~~~~~~ 248 (281)
T PRK06806 217 KKCIQHGIRKINVATATFNS---VITAVNNLVLNT 248 (281)
T ss_pred HHHHHcCCcEEEEhHHHHHH---HHHHHHHHHHhC
Confidence 89998865 788887753 344666666543
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.1e-05 Score=65.06 Aligned_cols=52 Identities=10% Similarity=0.026 Sum_probs=45.8
Q ss_pred CCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCC
Q psy4398 211 PRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 211 ~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~ 262 (306)
+..+.+.+.++++++.+ ++|++..|||+|.++++++++.+ +.+|++++.||.
T Consensus 161 ~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~ 216 (223)
T TIGR01768 161 APEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVD 216 (223)
T ss_pred CCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHH
Confidence 34456789999999999 99999999999999999999974 599999999873
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00019 Score=64.46 Aligned_cols=199 Identities=13% Similarity=0.118 Sum_probs=117.6
Q ss_pred HHcCCCEEEecceechhhhh-hhhhhhcccccccccCCCCCceeeecC-CCCCCceEEEecCCCHHHHHHHHHHHhc-CC
Q psy4398 51 LDYGADLVYSEELVDHKLVK-TERKVNDLLNTIDFVDPLDGSVVFRTC-PREKNKIILQIGTADPERALEAAKKVEH-DV 127 (306)
Q Consensus 51 ~~~G~g~~~te~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~ 127 (306)
.++|++.++.|-....|... -.+.+- ..+. .+...+ .+-+.|+++|+.-+++. ++...+.+ |+
T Consensus 38 ~~~GvD~viveN~~d~P~~~~~~p~tv---a~m~--------~i~~~v~~~~~~p~GvnvL~nd~~---aal~iA~a~ga 103 (257)
T TIGR00259 38 EEGGVDAVMFENFFDAPFLKEVDPETV---AAMA--------VIAGQLKSDVSIPLGINVLRNDAV---AALAIAMAVGA 103 (257)
T ss_pred HhCCCCEEEEecCCCCCCcCCCCHHHH---HHHH--------HHHHHHHHhcCCCeeeeeecCCCH---HHHHHHHHhCC
Confidence 47899999998776555421 111110 0000 011111 12356899998877653 22334443 89
Q ss_pred CEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--CC--ChHHHHHHHHHHHHcC-CcEEEE
Q psy4398 128 AAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--FH--NEADTIALCKRLEACG-IIAIGV 202 (306)
Q Consensus 128 d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g~--~~~~~~~~a~~l~~~G-~d~i~v 202 (306)
|.|.+|.-|-.. ..+ .|.+..+...+.+.-+++.+ ++.++.-+.. +. ...+..+.++.....| +|+|++
T Consensus 104 ~FIRv~~~~g~~--~~d--~G~~~~~a~e~~r~r~~l~~--~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDaviv 177 (257)
T TIGR00259 104 KFIRVNVLTGVY--ASD--QGIIEGNAGELIRYKKLLGS--EVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVIL 177 (257)
T ss_pred CEEEEccEeeeE--ecc--cccccccHHHHHHHHHHcCC--CcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 999998655321 111 12344455555555444442 3343333322 12 1234677787777666 999999
Q ss_pred cccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh--hhhhccccCCCCCchH----HHHHHHHHh
Q psy4398 203 HGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYPVEKLPK----TILYAHCKY 274 (306)
Q Consensus 203 ~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~~p~~~~----~~l~~~~~~ 274 (306)
+|.... .+.+|+.++++++.. +.|++.+||++ ++++.++++. |+.+|+.+=.+-.|.. .-+++||++
T Consensus 178 tG~~TG----~~~d~~~l~~vr~~~~~~PvllggGvt-~eNv~e~l~~adGviVgS~~K~~G~~~n~~D~~rV~~Fm~~ 251 (257)
T TIGR00259 178 SGKTTG----TEVDLELLKLAKETVKDTPVLAGSGVN-LENVEELLSIADGVIVATTIKKDGVFNNFVDQARVSQFVEK 251 (257)
T ss_pred CcCCCC----CCCCHHHHHHHHhccCCCeEEEECCCC-HHHHHHHHhhCCEEEECCCcccCCccCCCcCHHHHHHHHHH
Confidence 986432 246899999999866 79999999986 8888888863 8899998753323222 256666664
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00013 Score=63.35 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=84.4
Q ss_pred ceEEEec--CCCHHHHHHHHHHHhc-CCC--EEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEe
Q psy4398 103 KIILQIG--TADPERALEAAKKVEH-DVA--AIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKI 176 (306)
Q Consensus 103 p~ivql~--g~~~~~~~~aa~~~~~-g~d--~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 176 (306)
.-.+|+. +.+.+++.+.++.+.+ |.. .+-+|-...... .-+..|-.+..+.. -++.+++.. +..|.+.+
T Consensus 28 ~~~iqlR~k~~~~~~~~~~~~~l~~~~~~~~~liin~~~~la~-~~~~~gvHl~~~~~----~~~~~r~~~~~~~ig~s~ 102 (201)
T PRK07695 28 VDYIHIREREKSAKELYEGVESLLKKGVPASKLIINDRVDIAL-LLNIHRVQLGYRSF----SVRSVREKFPYLHVGYSV 102 (201)
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHhCCCCCeEEEECHHHHHH-HcCCCEEEeCcccC----CHHHHHHhCCCCEEEEeC
Confidence 4668887 4567777777776654 433 355552211000 00111222222211 123334333 23333332
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---h
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---C 251 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v 251 (306)
. + .+.++.+++.|+|++.++...... ....+..++.++++++.+++||++.||| +++++.++++.| +
T Consensus 103 ~---s----~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 103 H---S----LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred C---C----HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 2 2 334677888999999764432211 1122347899999999999999999999 899999999875 4
Q ss_pred hhccccCC
Q psy4398 252 AFLRNHYP 259 (306)
Q Consensus 252 ~vGrall~ 259 (306)
++|++++.
T Consensus 175 av~s~i~~ 182 (201)
T PRK07695 175 AVMSGIFS 182 (201)
T ss_pred EEEHHHhc
Confidence 89999975
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.6e-05 Score=70.68 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=68.3
Q ss_pred HHHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 184 DTIALCKRLEA-CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 184 ~~~~~a~~l~~-~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
+..++|+.+.+ .|+|.+++-+-.... ...+.++++++++.+.+++||...|||+|.++++.+++.|+ .+|++.+.
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~-~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~ 110 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAK-AQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQ 110 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccc-cCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhc
Confidence 56789999999 799999987654332 12346899999999999999999999999999999999875 89999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
||.+.+.
T Consensus 111 ~~~~l~~ 117 (234)
T PRK13587 111 DTDWLKE 117 (234)
T ss_pred CHHHHHH
Confidence 9855544
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.7e-05 Score=70.57 Aligned_cols=131 Identities=19% Similarity=0.106 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~ 190 (306)
++.++.+.++.+. +|+|.|.+|..... ..|++.- .++..+.+++ ++ .++||+++-- . +.+.++
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~~-----~~h~~~~-~~~~~i~~~i---k~-~~ipVIaG~V--~----t~e~A~ 202 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVVS-----AEHVSKE-GEPLNLKEFI---YE-LDVPVIVGGC--V----TYTTAL 202 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccchh-----hhccCCc-CCHHHHHHHH---HH-CCCCEEEeCC--C----CHHHHH
Confidence 3445566666554 59999999864311 2232211 1344443333 33 4789887221 2 245566
Q ss_pred HHHHcCCcEEEEcccCCCC----C-CC--CCCcHHHHHHHHhh-------C---CCcEEEecCCCCHHHHHHHHHhh---
Q psy4398 191 RLEACGIIAIGVHGRTKAE----R-PR--HRNRIEMIRTLTQH-------L---KIPVIANGGSKEIVDYGGVFSLN--- 250 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~~~~----~-~~--~p~~~~~v~~i~~~-------~---~ipvia~GGI~s~~~~~~~l~~~--- 250 (306)
.+.++|||+|.+ ++.... + .. +.+.+..+.+++++ . ++|||+.|||.+..|+.+++..|
T Consensus 203 ~l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~ 281 (368)
T PRK08649 203 HLMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADA 281 (368)
T ss_pred HHHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCe
Confidence 666799999977 332210 1 11 12234444444332 1 59999999999999999999875
Q ss_pred hhhccccCC
Q psy4398 251 CAFLRNHYP 259 (306)
Q Consensus 251 v~vGrall~ 259 (306)
+++|+.+..
T Consensus 282 Vm~Gs~fa~ 290 (368)
T PRK08649 282 VMLGSPLAR 290 (368)
T ss_pred ecccchhcc
Confidence 499999875
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.9e-05 Score=69.97 Aligned_cols=79 Identities=9% Similarity=0.201 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCC-CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPR-HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~-~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
+..++++.+.+. ++.+++-+.. +... .+.++++++++.+.+++||++.|||+|.+|++++++.++ .+|++.+
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDld--ga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~- 106 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLD--GAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF- 106 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECc--chhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc-
Confidence 678999999998 9999985543 2222 235899999999999999999999999999999998754 8999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
||.+.+.
T Consensus 107 ~~~~l~~ 113 (228)
T PRK04128 107 DLEFLEK 113 (228)
T ss_pred CHHHHHH
Confidence 8854433
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00012 Score=71.72 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=83.3
Q ss_pred HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEE-EeccCCChHHHHHHHHHHHHcCCcE
Q psy4398 122 KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSC-KIRVFHNEADTIALCKRLEACGIIA 199 (306)
Q Consensus 122 ~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~v-Kir~g~~~~~~~~~a~~l~~~G~d~ 199 (306)
.+++|+|.|-+....- .-..+.++++.+|+.. +.+|++ -+. +.+-++.|.++|+|+
T Consensus 235 Lv~aGvd~i~~D~a~~---------------~~~~~~~~i~~ik~~~p~~~v~agnv~-------t~~~a~~l~~aGad~ 292 (479)
T PRK07807 235 LLEAGVDVLVVDTAHG---------------HQEKMLEALRAVRALDPGVPIVAGNVV-------TAEGTRDLVEAGADI 292 (479)
T ss_pred HHHhCCCEEEEeccCC---------------ccHHHHHHHHHHHHHCCCCeEEeeccC-------CHHHHHHHHHcCCCE
Confidence 4456999988864431 1356788999999876 567766 333 467777888899999
Q ss_pred EEEcc------cCCCCCCCCCCcHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 200 IGVHG------RTKAERPRHRNRIEMIRTLTQ---HLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 200 i~v~~------~~~~~~~~~p~~~~~v~~i~~---~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
|-+-- .++.-.-.+.+.+..+.++++ ..++|||+-|||.+..++.+++..|+ ++|+.+..
T Consensus 293 v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag 364 (479)
T PRK07807 293 VKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAG 364 (479)
T ss_pred EEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhcc
Confidence 97521 122111123357888888877 45899999999999999999999864 99998753
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00046 Score=62.38 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=90.4
Q ss_pred CCceEEEecCCCHH--------HHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 101 KNKIILQIGTADPE--------RALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 101 ~~p~ivql~g~~~~--------~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
+.++|..+...+|. +..+.|+..+. |+++|-+..- ...+|++ .+.++++++.+++|
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte-------~~~f~g~--------~~~l~~v~~~v~iP 113 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTD-------ERFFQGS--------LEYLRAARAAVSLP 113 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecc-------cccCCCC--------HHHHHHHHHhcCCC
Confidence 46788888654443 34677776665 8999966311 1334444 35567777778899
Q ss_pred EEEEecc------------C----------CChHHHHHHH--------------------HHHHHcCCcEEEEcccCCCC
Q psy4398 172 VSCKIRV------------F----------HNEADTIALC--------------------KRLEACGIIAIGVHGRTKAE 209 (306)
Q Consensus 172 v~vKir~------------g----------~~~~~~~~~a--------------------~~l~~~G~d~i~v~~~~~~~ 209 (306)
|..|--. | .+.++..++. +.+.+.|+|.|-+++|+...
T Consensus 114 vl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~ 193 (260)
T PRK00278 114 VLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKT 193 (260)
T ss_pred EEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCccc
Confidence 9987432 1 0111222222 23334455555555443221
Q ss_pred CCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCC
Q psy4398 210 RPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 210 ~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~ 262 (306)
+ ..+++...++.+.+ ..|+|+.|||.+++++..+++.| +.+|++++..+.
T Consensus 194 -~--~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~d 248 (260)
T PRK00278 194 -F--EVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADD 248 (260)
T ss_pred -c--cCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCC
Confidence 1 23577888888876 36999999999999999999875 499999987544
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00024 Score=63.63 Aligned_cols=186 Identities=14% Similarity=0.110 Sum_probs=108.9
Q ss_pred HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecC-CCCCCceEEEecCCCHHHHHHHHHHHhc-CCC
Q psy4398 51 LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC-PREKNKIILQIGTADPERALEAAKKVEH-DVA 128 (306)
Q Consensus 51 ~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d 128 (306)
.++|++.++.|-....|...... ...+..+.. +...+ ++-+.|+++|+.-+++.. +...+.+ |+|
T Consensus 39 ~~~GvDgiiveN~~D~Py~~~~~--~etvaaM~~--------i~~~v~~~~~~p~GVnvL~nd~~a---alaiA~A~ga~ 105 (254)
T PF03437_consen 39 EEGGVDGIIVENMGDVPYPKRVG--PETVAAMAR--------IAREVRREVSVPVGVNVLRNDPKA---ALAIAAATGAD 105 (254)
T ss_pred HHCCCCEEEEecCCCCCccCCCC--HHHHHHHHH--------HHHHHHHhCCCCEEeeeecCCCHH---HHHHHHHhCCC
Confidence 47899988888766554322100 000111111 11111 123579999988766532 2233443 889
Q ss_pred EEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C--CChHHHHHHHHHH-HHcCCcEEEEc
Q psy4398 129 AIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F--HNEADTIALCKRL-EACGIIAIGVH 203 (306)
Q Consensus 129 ~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g--~~~~~~~~~a~~l-~~~G~d~i~v~ 203 (306)
.|.+|.-|-.. ..+ .|.+..+...+.+.-+.+... +.++..+.. + ....++.+.++.. +..++|+|.++
T Consensus 106 FIRv~~~~g~~--~~d--~G~~~~~a~e~~r~R~~l~a~--v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVt 179 (254)
T PF03437_consen 106 FIRVNVFVGAY--VTD--EGIIEGCAGELLRYRKRLGAD--VKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVT 179 (254)
T ss_pred EEEecCEEcee--ccc--CccccccHHHHHHHHHHcCCC--eEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEEC
Confidence 99988665321 112 123444444444443333222 344433332 1 1122344445444 77899999999
Q ss_pred ccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH--hhhhhccccCCC
Q psy4398 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS--LNCAFLRNHYPV 260 (306)
Q Consensus 204 ~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~--~~v~vGrall~~ 260 (306)
|..-. .+.+.+.+.++++.+++||+..+|++ .+++.+.++ .|+.+|+.+-.|
T Consensus 180 G~~TG----~~~~~~~l~~vr~~~~~PVlvGSGvt-~~Ni~~~l~~ADG~IVGS~~K~~ 233 (254)
T PF03437_consen 180 GKATG----EPPDPEKLKRVREAVPVPVLVGSGVT-PENIAEYLSYADGAIVGSYFKKD 233 (254)
T ss_pred CcccC----CCCCHHHHHHHHhcCCCCEEEecCCC-HHHHHHHHHhCCEEEEeeeeeeC
Confidence 86422 24588999999999999999999976 888988886 488999987543
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00036 Score=63.36 Aligned_cols=121 Identities=14% Similarity=0.196 Sum_probs=78.8
Q ss_pred HHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc---ccccEEEEe-------ccCCChHHHHHHH
Q psy4398 120 AKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN---LSIPVSCKI-------RVFHNEADTIALC 189 (306)
Q Consensus 120 a~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~---~~~pv~vKi-------r~g~~~~~~~~~a 189 (306)
.+.++.|+|.|++.+-. |.. ..+...+.++++++. .++|+.+-. ....+.+...+.+
T Consensus 100 e~A~~~Gad~v~~~~~~----------g~~---~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~ 166 (267)
T PRK07226 100 EEAIKLGADAVSVHVNV----------GSE---TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAA 166 (267)
T ss_pred HHHHHcCCCEEEEEEec----------CCh---hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHH
Confidence 33445699998885221 110 012233344444433 378877742 1122334566778
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC--CHHHHHHHH----Hh---hhhhccccCCC
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK--EIVDYGGVF----SL---NCAFLRNHYPV 260 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~--s~~~~~~~l----~~---~v~vGrall~~ 260 (306)
+.+.+.|+|+|-.+ +. .+.+.++++.+..++||++.|||+ +.+++.+.+ +. |+.+||+++..
T Consensus 167 ~~a~e~GAD~vKt~-------~~--~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~ 237 (267)
T PRK07226 167 RVAAELGADIVKTN-------YT--GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQH 237 (267)
T ss_pred HHHHHHCCCEEeeC-------CC--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcC
Confidence 88889999999654 22 256888888888889999999999 877776665 44 55999999987
Q ss_pred CC
Q psy4398 261 EK 262 (306)
Q Consensus 261 p~ 262 (306)
+.
T Consensus 238 ~~ 239 (267)
T PRK07226 238 ED 239 (267)
T ss_pred CC
Confidence 64
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00024 Score=63.73 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCc------ccccc--CChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGM------GAALL--STPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~------G~~l~--~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
.+.+.+.+.++.+. .|+|.|||-+.- +....||- --++. -+.+.+.++++.+|+...+|+.+-.- .+
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPf--SDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y--~N 88 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPY--SDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTY--YN 88 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC--CCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec--cc
Confidence 46788888888664 599999996432 21122210 00111 24567788899998777888654332 22
Q ss_pred h--H-HHHHHHHHHHHcCCcEEEEccc--------------------------CC----------CCC------------
Q psy4398 182 E--A-DTIALCKRLEACGIIAIGVHGR--------------------------TK----------AER------------ 210 (306)
Q Consensus 182 ~--~-~~~~~a~~l~~~G~d~i~v~~~--------------------------~~----------~~~------------ 210 (306)
. . ...++++.+.++|+|++.+-+- +. ...
T Consensus 89 ~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG 168 (250)
T PLN02591 89 PILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTG 168 (250)
T ss_pred HHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcC
Confidence 1 1 2445666666666666664321 10 000
Q ss_pred -CCC-CCc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCC
Q psy4398 211 -PRH-RNR-IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYP 259 (306)
Q Consensus 211 -~~~-p~~-~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~ 259 (306)
... +.. .+.++++++.+++||+..-||++.++++++++. |+.+|+++++
T Consensus 169 ~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 169 ARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred CCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 001 223 355899999899999999999999999999886 5699999854
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=71.95 Aligned_cols=120 Identities=13% Similarity=0.036 Sum_probs=81.0
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEA 194 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~ 194 (306)
...+...+++|+|.|-|...++ +++.+.++++.+++.. ++||++.-- . +.+-++.|.+
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~g~~--~----t~~~~~~l~~ 285 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHG---------------HQVKMISAIKAVRALDLGVPIVAGNV--V----SAEGVRDLLE 285 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCC---------------CcHHHHHHHHHHHHHCCCCeEEEecc--C----CHHHHHHHHH
Confidence 3333444556999998876553 3577889999999875 788888422 2 3566777788
Q ss_pred cCCcEEEEcccC------CCCCCCCCCc----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhcccc
Q psy4398 195 CGIIAIGVHGRT------KAERPRHRNR----IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 195 ~G~d~i~v~~~~------~~~~~~~p~~----~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGral 257 (306)
+|+|+|.|.... +.-...+.+. ++.+..+++. ++|||+.|||++..|+.+++..|+ ++|+.+
T Consensus 286 ~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA~~vm~g~~~ 360 (475)
T TIGR01303 286 AGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGASNVMVGSWF 360 (475)
T ss_pred hCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhh
Confidence 999999864321 1111112222 3333333433 899999999999999999999864 787765
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=63.45 Aligned_cols=143 Identities=16% Similarity=0.158 Sum_probs=85.5
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
+.++|...+..++.+.++.+.. |++.|++.+. + |. +..+..+-.++++.+++.++.|+.|.+-.. +
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~--------d--~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~-d- 68 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVM--------D--GH-FVPNLTFGPPVVKALRKHTDLPLDVHLMVE-N- 68 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecc--------c--CC-CCCccccCHHHHHHHHhhCCCcEEEEeeeC-C-
Confidence 4567788899899998887765 8999999421 1 00 001111223455666654444544333321 2
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCCCCC-CC-
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AERPRH-RN- 215 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~~~~-p~- 215 (306)
..+.++.+.++|+|++++|+... .....+ ..
T Consensus 69 --~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~ 146 (211)
T cd00429 69 --PERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFI 146 (211)
T ss_pred --HHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccC
Confidence 23455666677788877664210 000011 11
Q ss_pred --cHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCC
Q psy4398 216 --RIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEK 262 (306)
Q Consensus 216 --~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~ 262 (306)
.++.+.++++.+ ++|+++.|||+. +++.++++. ++.+||+++..+.
T Consensus 147 ~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~~~ 202 (211)
T cd00429 147 PEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGSDD 202 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCCCC
Confidence 234556666665 389999999995 999999976 4599999986543
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >KOG0623|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.8e-05 Score=70.22 Aligned_cols=95 Identities=21% Similarity=0.274 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
...++.+++++.|+..|.+.+...++...+ .++++++.+++.++|||||+.|-..++..+++++. -++++.+++..
T Consensus 442 gv~ELtrAcEalGAGEiLLNCiD~DGsn~G-yDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaLaAGiFHR 520 (541)
T KOG0623|consen 442 GVFELTRACEALGAGEILLNCIDCDGSNKG-YDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAALAAGIFHR 520 (541)
T ss_pred chhhHHHHHHHhCcchheeeeeccCCCCCC-cchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhhhccceec
Confidence 378999999999999999998888776665 59999999999999999999999999999999975 34888888876
Q ss_pred CCchHHHHHHHHHhcCCCC
Q psy4398 261 EKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 261 p~~~~~~l~~~~~~~g~~~ 279 (306)
-.++-..+++||.++++.+
T Consensus 521 ~e~~i~dVKEyL~eh~i~V 539 (541)
T KOG0623|consen 521 KEVPIQDVKEYLQEHRIEV 539 (541)
T ss_pred CccchHHHHHHHHhhceee
Confidence 6777779999999998653
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00022 Score=62.88 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=95.3
Q ss_pred EEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEEEecc
Q psy4398 105 ILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSCKIRV 178 (306)
Q Consensus 105 ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir~ 178 (306)
..+|...+...+.+-.+++++ |+|.+-+.+- .|| .-+--++++++|+. ++.|+.|=+=.
T Consensus 3 ~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn---------------~tfg~~~i~~i~~~~~~~~~dvHLMv 67 (220)
T PRK08883 3 APSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPN---------------LTFGAPICKALRDYGITAPIDVHLMV 67 (220)
T ss_pred chhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCc---------------cccCHHHHHHHHHhCCCCCEEEEecc
Confidence 356777788888888887875 8888666432 344 22234567888876 57887777653
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCCCCC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AERPRH 213 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~~~~ 213 (306)
++...+++.+.++|+|.|++|.-.. ..++.+
T Consensus 68 ----~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgG 143 (220)
T PRK08883 68 ----KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGG 143 (220)
T ss_pred ----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCC
Confidence 2356677888889999999875310 111111
Q ss_pred ----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 214 ----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 214 ----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
|..++-++++++.. ++||.+-|||+ .+++.++.++|+ .+|++++..+.
T Consensus 144 q~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 144 QSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPD 203 (220)
T ss_pred ceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 23466777777765 38999999998 899999998865 99999986443
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00026 Score=69.62 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~ 190 (306)
+++.+..+...++.|+|.|-++... .+...+.+.++.+++.. +.||.++-- .+ .+-++
T Consensus 226 ~~~~~e~a~~L~~agvdvivvD~a~---------------g~~~~vl~~i~~i~~~~p~~~vi~g~v--~t----~e~a~ 284 (486)
T PRK05567 226 GADNEERAEALVEAGVDVLVVDTAH---------------GHSEGVLDRVREIKAKYPDVQIIAGNV--AT----AEAAR 284 (486)
T ss_pred CcchHHHHHHHHHhCCCEEEEECCC---------------CcchhHHHHHHHHHhhCCCCCEEEecc--CC----HHHHH
Confidence 3444555555556799988664221 12244667788888887 788888544 33 45566
Q ss_pred HHHHcCCcEEEEcccC------CCCCCCCCCcHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 191 RLEACGIIAIGVHGRT------KAERPRHRNRIEMIRTLTQHL---KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~------~~~~~~~p~~~~~v~~i~~~~---~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.+.++|+|+|.+.... +.-...+.+.++.+.++++.. ++|||+.|||++..|+.+++..|+ ++|+++-
T Consensus 285 ~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a 364 (486)
T PRK05567 285 ALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLA 364 (486)
T ss_pred HHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccc
Confidence 7778999999863211 111122334677777776643 799999999999999999999865 8898863
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00057 Score=59.61 Aligned_cols=126 Identities=14% Similarity=0.181 Sum_probs=91.3
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C-CChHHHHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F-HNEADTIALCKRL 192 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g-~~~~~~~~~a~~l 192 (306)
..++...++.|+|.||+=+. +|.....+.+.+.+=|+++++.++-++.+|+=+ + .+.++....++.+
T Consensus 80 ~~Ea~~ai~~GAdEiDmVin----------ig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~ 149 (228)
T COG0274 80 AAEAREAIENGADEIDMVIN----------IGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIA 149 (228)
T ss_pred HHHHHHHHHcCCCeeeeeee----------HHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHH
Confidence 44444455679999987321 233444578888888999999886545666543 2 4566778999999
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
.++|+|+|--+ .+...+.+.++.++-+++.+ ++.|=++|||+|.+++..+++.|. -+|+
T Consensus 150 ~~aGAdFVKTS----TGf~~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga~RiGt 211 (228)
T COG0274 150 IEAGADFVKTS----TGFSAGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGATRIGT 211 (228)
T ss_pred HHhCCCEEEcC----CCCCCCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhHHHhcc
Confidence 99999999643 22334456778888888887 488999999999999999999865 3443
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0047 Score=56.95 Aligned_cols=205 Identities=13% Similarity=0.067 Sum_probs=123.6
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPR 99 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 99 (306)
-+..++|.+|..|+++--+--.+...++......|+.++..-.-..+ . ......+++ +.++.
T Consensus 73 ~~~~i~~~~~~sRl~~Gtg~y~s~~~~~~a~~asg~e~vTva~rr~~-~--~~~~~~~~~---------------~~~~~ 134 (326)
T PRK11840 73 DSWTVAGKTFSSRLLVGTGKYKDFEETAAAVEASGAEIVTVAVRRVN-V--SDPGAPMLT---------------DYIDP 134 (326)
T ss_pred CCeEECCEEEecceeEecCCCCCHHHHHHHHHHhCCCEEEEEEEeec-C--cCCCcchHH---------------Hhhhh
Confidence 46789999999999998887555555666666678766544321111 0 000111111 11111
Q ss_pred CCCceEEEe-cCCCHHHHHHHHHHHhc--CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEE
Q psy4398 100 EKNKIILQI-GTADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSC 174 (306)
Q Consensus 100 ~~~p~ivql-~g~~~~~~~~aa~~~~~--g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~v 174 (306)
.+..+..|- ++.+.++....|+.+.+ |-+-|-|..--.+ . .++.|+.. .+++.+.-+ ++-+++
T Consensus 135 ~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~------~---~llpd~~~---~v~aa~~L~~~Gf~v~~ 202 (326)
T PRK11840 135 KKYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDA------K---TLYPDMVE---TLKATEILVKEGFQVMV 202 (326)
T ss_pred cCCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCC------C---CcccCHHH---HHHHHHHHHHCCCEEEE
Confidence 222333443 35788999999998875 5676666433211 1 23334443 444444332 555666
Q ss_pred EeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---h
Q psy4398 175 KIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---C 251 (306)
Q Consensus 175 Kir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v 251 (306)
-+. .+ ...|+++++.|+-++--- ...-+.-.+..+-+.++.+.+..++||+.-+||.+++|+..+++.| +
T Consensus 203 yc~--~d----~~~a~~l~~~g~~avmPl-~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgV 275 (326)
T PRK11840 203 YCS--DD----PIAAKRLEDAGAVAVMPL-GAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGV 275 (326)
T ss_pred EeC--CC----HHHHHHHHhcCCEEEeec-cccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 666 33 577888999999433321 1111111222366888999988999999999999999999999975 4
Q ss_pred hhccccCC--CC
Q psy4398 252 AFLRNHYP--VE 261 (306)
Q Consensus 252 ~vGrall~--~p 261 (306)
.+.+++.. ||
T Consensus 276 L~nSaIa~a~dP 287 (326)
T PRK11840 276 LMNTAIAEAKNP 287 (326)
T ss_pred EEcceeccCCCH
Confidence 77777754 55
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0004 Score=61.48 Aligned_cols=126 Identities=15% Similarity=0.124 Sum_probs=85.5
Q ss_pred HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------------------CCCh-
Q psy4398 122 KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------------------FHNE- 182 (306)
Q Consensus 122 ~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------------------g~~~- 182 (306)
.++.|.|+|.+ ||+..-..+.+.++++++|+ .++|+..-.+. +.++
T Consensus 28 ~~~~gtdai~v--------------GGS~~vt~~~~~~~v~~ik~-~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~ 92 (232)
T PRK04169 28 ICESGTDAIIV--------------GGSDGVTEENVDELVKAIKE-YDLPVILFPGNIEGISPGADAYLFPSVLNSRNPY 92 (232)
T ss_pred HHhcCCCEEEE--------------cCCCccchHHHHHHHHHHhc-CCCCEEEeCCCccccCcCCCEEEEEEEecCCCcc
Confidence 34459999988 44443456778889999988 78888775442 0111
Q ss_pred ---HHHHHHHHHHHHcCCc-----EEEEcccC-------------------------------------CCCCCCCCCcH
Q psy4398 183 ---ADTIALCKRLEACGII-----AIGVHGRT-------------------------------------KAERPRHRNRI 217 (306)
Q Consensus 183 ---~~~~~~a~~l~~~G~d-----~i~v~~~~-------------------------------------~~~~~~~p~~~ 217 (306)
..-.+.+..+...|.. ++++.... .......+.+.
T Consensus 93 ~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g~~~~~ 172 (232)
T PRK04169 93 WIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDPVPP 172 (232)
T ss_pred hHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeEEEECCCCCCCCCCH
Confidence 1224455555555553 33332110 01122345678
Q ss_pred HHHHHHHhhCCC-cEEEecCCCCHHHHHHHHHhh---hhhccccCCCCC
Q psy4398 218 EMIRTLTQHLKI-PVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 218 ~~v~~i~~~~~i-pvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~ 262 (306)
++++++++.++. |++..|||+|.++++++++.+ +.+|++++.||.
T Consensus 173 e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 173 EMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred HHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 999999999988 999999999999999988875 599999999875
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0033 Score=54.93 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=123.2
Q ss_pred cccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCC
Q psy4398 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPRE 100 (306)
Q Consensus 21 ~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (306)
+.+|++-+|..|+++--+--.+...+....+..|..++..-+-..+- . .....+++. .+...
T Consensus 7 ~l~i~g~~f~SRLllGTgky~s~~~~~~av~asg~~ivTvAlRR~~~-~--~~~~~~~l~---------------~l~~~ 68 (262)
T COG2022 7 MLTIAGKTFDSRLLLGTGKYPSPAVLAEAVRASGSEIVTVALRRVNA-T--RPGGDGILD---------------LLIPL 68 (262)
T ss_pred ceeecCeeeeeeEEEecCCCCCHHHHHHHHHhcCCceEEEEEEeecc-c--CCCcchHHH---------------Hhhhc
Confidence 46789999999999988774444446666666786665443322111 0 000111111 11112
Q ss_pred CCceEEEe-cCCCHHHHHHHHHHHhc--CCCEEEEcc-CCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 101 KNKIILQI-GTADPERALEAAKKVEH--DVAAIDINM-GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 101 ~~p~ivql-~g~~~~~~~~aa~~~~~--g~d~veln~-gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
+..+..|- ++.+.++....|+.+.+ +-+-|-|.. +++. .++-|+-.+.+-.+.+.+. ++-|..-+
T Consensus 69 ~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~----------tLlPD~~etl~Aae~Lv~e-GF~VlPY~ 137 (262)
T COG2022 69 GVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEK----------TLLPDPIETLKAAEQLVKE-GFVVLPYT 137 (262)
T ss_pred CcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCc----------ccCCChHHHHHHHHHHHhC-CCEEeecc
Confidence 22333332 35788999999998876 566655542 3322 2444444333333333222 55566666
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hh
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AF 253 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~v 253 (306)
+ .| .-+|++|++.||..+-=-+- +-+.-.++.+-..++.|.+..++|||.--||.++.|+-.+++.|+ .+
T Consensus 138 ~--dD----~v~arrLee~GcaavMPl~a-PIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 138 T--DD----PVLARRLEEAGCAAVMPLGA-PIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred C--CC----HHHHHHHHhcCceEeccccc-cccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 5 33 46889999999988852221 122233455667888888889999999999999999999999754 55
Q ss_pred cccc--CCCC
Q psy4398 254 LRNH--YPVE 261 (306)
Q Consensus 254 Gral--l~~p 261 (306)
.+|+ -.||
T Consensus 211 NTAiA~A~DP 220 (262)
T COG2022 211 NTAIARAKDP 220 (262)
T ss_pred hhHhhccCCh
Confidence 5554 2577
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00037 Score=61.76 Aligned_cols=136 Identities=7% Similarity=0.086 Sum_probs=88.2
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccC-CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMG-CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~g-cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
.++-+-|.-.+|+++.+.+ .+.|+|+|-+|++ +.. +...+.++.+++. +. .+-+...+
T Consensus 66 ~~~~vhlmv~~p~d~~~~~--~~~gad~v~vH~~q~~~----------------d~~~~~~~~i~~~-g~--~iGls~~~ 124 (229)
T PLN02334 66 APLDCHLMVTNPEDYVPDF--AKAGASIFTFHIEQAST----------------IHLHRLIQQIKSA-GM--KAGVVLNP 124 (229)
T ss_pred CcEEEEeccCCHHHHHHHH--HHcCCCEEEEeeccccc----------------hhHHHHHHHHHHC-CC--eEEEEECC
Confidence 4567788888999987666 4569999999876 211 2234556666543 32 23333222
Q ss_pred ChHHHHHHHHHHHHcC-CcEEEE---cccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---h
Q psy4398 181 NEADTIALCKRLEACG-IIAIGV---HGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---A 252 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G-~d~i~v---~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~ 252 (306)
.+..+.++.+.+.| +|++.+ +.....+. ..+..++.++++++.. ++||.+-||| +.+++.++++.|+ .
T Consensus 125 --~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~-~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~aGad~vv 200 (229)
T PLN02334 125 --GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQS-FIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEAGANVIV 200 (229)
T ss_pred --CCCHHHHHHHHhccCCCEEEEEEEecCCCccc-cCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHcCCCEEE
Confidence 23345555555564 999954 43322222 2244567788888875 6899999999 5899999998754 9
Q ss_pred hccccCCCCC
Q psy4398 253 FLRNHYPVEK 262 (306)
Q Consensus 253 vGrall~~p~ 262 (306)
+|++++..+.
T Consensus 201 vgsai~~~~d 210 (229)
T PLN02334 201 AGSAVFGAPD 210 (229)
T ss_pred EChHHhCCCC
Confidence 9999986543
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00099 Score=59.81 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCc-----cc-cc--cCChHHHHHHHHHHHhc-ccccEEEEeccC
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGM-----GA-AL--LSTPDIACNILTTLISN-LSIPVSCKIRVF 179 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~-----G~-~l--~~~~~~~~eiv~~v~~~-~~~pv~vKir~g 179 (306)
-.+++...++.+.+. .|+|.+||-+. .+....||- +. ++ ....+.+.++++.+|+. ..+|+.+=.-..
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELGvP--fSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~N 104 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELGVP--FSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYN 104 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEecCC--CCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 347788999988765 59999999543 222222210 00 11 12567788999999855 678877654421
Q ss_pred CCh-HHHHHHHHHHHHcCCcEEEEcc-------------------------cC-C----------CCCC-----------
Q psy4398 180 HNE-ADTIALCKRLEACGIIAIGVHG-------------------------RT-K----------AERP----------- 211 (306)
Q Consensus 180 ~~~-~~~~~~a~~l~~~G~d~i~v~~-------------------------~~-~----------~~~~----------- 211 (306)
+-. -...++.+.+.++|+|++.+-+ .+ . ..++
T Consensus 105 pi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG 184 (265)
T COG0159 105 PIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTG 184 (265)
T ss_pred HHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccC
Confidence 100 1234556666666666666422 11 0 0010
Q ss_pred -CCC---CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccCC
Q psy4398 212 -RHR---NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYP 259 (306)
Q Consensus 212 -~~p---~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~ 259 (306)
..+ .--+.++++++..++||...=||.++++++++.+. |+.+|+|+..
T Consensus 185 ~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~ADGVIVGSAiV~ 238 (265)
T COG0159 185 ARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEAADGVIVGSAIVK 238 (265)
T ss_pred CCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHhCCeEEEcHHHHH
Confidence 111 12467899999999999999999999999999986 7899999864
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.8e-05 Score=67.25 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++++.+.+.|++.+++-..+.... ....+++.++++.+.+++|++.+|||+|.++++.+++.|+ .+|+.++.+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~-~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~ 111 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFE-GERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVEN 111 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhc-CCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 578899999999999998865442211 1235788999999999999999999999999999998864 999999988
Q ss_pred CCc
Q psy4398 261 EKL 263 (306)
Q Consensus 261 p~~ 263 (306)
|.+
T Consensus 112 ~~~ 114 (241)
T PRK13585 112 PEI 114 (241)
T ss_pred hHH
Confidence 743
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.9e-05 Score=70.06 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+++.|++.+++-+-.... ...+.++++++++.+.+.+||...|||+|.++++.+++.|+ .+|++.+.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~-~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAK-EGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHC-CTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcc-cCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 457899999999999999986543211 11245889999999999999999999999999999999876 99999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
||.+.+.
T Consensus 108 ~~~~l~~ 114 (229)
T PF00977_consen 108 DPELLEE 114 (229)
T ss_dssp CCHHHHH
T ss_pred chhHHHH
Confidence 9955433
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.5e-05 Score=66.07 Aligned_cols=86 Identities=13% Similarity=0.153 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+.+.|++.+++-+-.... ..+.+++.++++.+.+.+|+...|||+|.++++.+++.|+ .+|+..+.
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~--~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~ 112 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAIM--GRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLP 112 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCcccc--CCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceecc
Confidence 368899999999999999987765432 3456899999999999999999999999999999999874 88999887
Q ss_pred CCCchHHHHHHH
Q psy4398 260 VEKLPKTILYAH 271 (306)
Q Consensus 260 ~p~~~~~~l~~~ 271 (306)
| .+.+..++.|
T Consensus 113 ~-~~~~~~~~~~ 123 (233)
T cd04723 113 S-DDDEDRLAAL 123 (233)
T ss_pred c-hHHHHHHHhc
Confidence 7 5554444443
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=68.25 Aligned_cols=130 Identities=16% Similarity=0.107 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHH
Q psy4398 113 PERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKR 191 (306)
Q Consensus 113 ~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~ 191 (306)
+..+.+.++.+. +|+|.|-+|.-. +...|.+. ..++..+.++++ ..++||++.-- .+ .+.++.
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgrt-----~~q~~~sg-~~~p~~l~~~i~----~~~IPVI~G~V--~t----~e~A~~ 204 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGTL-----VSAEHVST-SGEPLNLKEFIG----ELDVPVIAGGV--ND----YTTALH 204 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEeccc-----hhhhccCC-CCCHHHHHHHHH----HCCCCEEEeCC--CC----HHHHHH
Confidence 445667777665 599999998332 22233111 124554444443 35789987221 23 344555
Q ss_pred HHHcCCcEEEEcc-cCCCCC-C--CCCCcHHHHHHHHh-------hCC---CcEEEecCCCCHHHHHHHHHhhh---hhc
Q psy4398 192 LEACGIIAIGVHG-RTKAER-P--RHRNRIEMIRTLTQ-------HLK---IPVIANGGSKEIVDYGGVFSLNC---AFL 254 (306)
Q Consensus 192 l~~~G~d~i~v~~-~~~~~~-~--~~p~~~~~v~~i~~-------~~~---ipvia~GGI~s~~~~~~~l~~~v---~vG 254 (306)
+.+.|+|+|.+.. ...... . .+.+....+.++++ ..+ +|||+.|||.+..|+.+++..|+ ++|
T Consensus 205 ~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 205 LMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLG 284 (369)
T ss_pred HHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeH
Confidence 5569999998421 111111 1 11223334444332 233 89999999999999999998754 777
Q ss_pred cccC
Q psy4398 255 RNHY 258 (306)
Q Consensus 255 rall 258 (306)
+++.
T Consensus 285 t~~a 288 (369)
T TIGR01304 285 SPLA 288 (369)
T ss_pred HHHH
Confidence 7765
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00082 Score=61.47 Aligned_cols=144 Identities=10% Similarity=0.128 Sum_probs=89.4
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|++++|-|...- ..+.+.++.||+.|.+-.+ ...+.++.+...++++..+. .+++|-.-+..
T Consensus 73 ~~vpV~lHlDH~~~~--e~i~~Ai~~GftSVm~D~S-----------~l~~eeNi~~t~~v~~~a~~-~gv~VE~ElG~v 138 (286)
T PRK06801 73 HDIPVVLNLDHGLHF--EAVVRALRLGFSSVMFDGS-----------TLEYEENVRQTREVVKMCHA-VGVSVEAELGAV 138 (286)
T ss_pred CCCCEEEECCCCCCH--HHHHHHHHhCCcEEEEcCC-----------CCCHHHHHHHHHHHHHHHHH-cCCeEEeecCcc
Confidence 467888888665422 2222334468888888422 22344556666666666544 35555444443
Q ss_pred CC-C------------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecC--CCCHH
Q psy4398 179 FH-N------------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGG--SKEIV 241 (306)
Q Consensus 179 g~-~------------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GG--I~s~~ 241 (306)
|. + ..+..+..+..++.|+|+|-+.=.+..+.|.+ +.+++.++++++.+++|++..|| |. .+
T Consensus 139 gg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e 217 (286)
T PRK06801 139 GGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DA 217 (286)
T ss_pred cCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HH
Confidence 10 0 11123333444478999999854444444533 36899999999999999999999 65 57
Q ss_pred HHHHHHHhhh---hhccccC
Q psy4398 242 DYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 242 ~~~~~l~~~v---~vGrall 258 (306)
++.++++.|+ -++|++.
T Consensus 218 ~~~~~i~~Gi~KINv~T~~~ 237 (286)
T PRK06801 218 DFRRAIELGIHKINFYTGMS 237 (286)
T ss_pred HHHHHHHcCCcEEEehhHHH
Confidence 7888888865 5555543
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00039 Score=60.86 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=81.8
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
+.++|...++..+.+.++.+.+ |++.|++-.. | | .+..+..+..+.++.+++.+..++.+-+-..
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~--------d--~-~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--- 71 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVM--------D--G-HFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--- 71 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCc--------c--C-CcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC---
Confidence 6678888999999998888765 9999999421 1 1 1111212334556666655443433322210
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC-------------------------------------C--------CCCCC-CCc
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK-------------------------------------A--------ERPRH-RNR 216 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~-------------------------------------~--------~~~~~-p~~ 216 (306)
+..+..+.+.++|+|++++|+... + .+..+ ...
T Consensus 72 -d~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~ 150 (220)
T PRK05581 72 -NPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFI 150 (220)
T ss_pred -CHHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCccccc
Confidence 123333444567777776664210 0 00011 112
Q ss_pred ---HHHHHHHHhhCC-----CcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCC
Q psy4398 217 ---IEMIRTLTQHLK-----IPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEK 262 (306)
Q Consensus 217 ---~~~v~~i~~~~~-----ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~ 262 (306)
++.+.++++.++ .+|...|||+. +++.++++. ++.+|++++.++.
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d 206 (220)
T PRK05581 151 PEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPD 206 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCC
Confidence 334455554432 23557799987 899999876 4599999997664
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00027 Score=69.63 Aligned_cols=123 Identities=14% Similarity=0.112 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHc
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC 195 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~ 195 (306)
+..+...+++|+|.|++. +.+ ...+...+.++.+++.++.++.|+-..-. +.+-++.+.++
T Consensus 244 ~~ra~~Lv~aGvd~i~vd--~a~-------------g~~~~~~~~i~~ir~~~~~~~~V~aGnV~----t~e~a~~li~a 304 (502)
T PRK07107 244 AERVPALVEAGADVLCID--SSE-------------GYSEWQKRTLDWIREKYGDSVKVGAGNVV----DREGFRYLAEA 304 (502)
T ss_pred HHHHHHHHHhCCCeEeec--Ccc-------------cccHHHHHHHHHHHHhCCCCceEEecccc----CHHHHHHHHHc
Confidence 344444555699999996 222 12344578889999887655666665212 34556666789
Q ss_pred CCcEEEEc--cc----CCCCCCCCCCcHHHHHHHHhhC-------C--CcEEEecCCCCHHHHHHHHHhhh---hhcccc
Q psy4398 196 GIIAIGVH--GR----TKAERPRHRNRIEMIRTLTQHL-------K--IPVIANGGSKEIVDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 196 G~d~i~v~--~~----~~~~~~~~p~~~~~v~~i~~~~-------~--ipvia~GGI~s~~~~~~~l~~~v---~vGral 257 (306)
|+|+|.+. +. ++...-.+++.+..+.+++++. + +|||+-|||++.-|+-+++..|+ ++||.+
T Consensus 305 GAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ 384 (502)
T PRK07107 305 GADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYF 384 (502)
T ss_pred CCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhh
Confidence 99999872 22 2222334455666776666643 4 89999999999999999998764 899875
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0015 Score=62.28 Aligned_cols=154 Identities=13% Similarity=0.112 Sum_probs=101.5
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
.++++-|--.++..+. ++.+ +.|+|.+-+|...+ .+.+.+.++++++. ++-+.+-+-
T Consensus 227 ~~I~~DLK~~Di~~~v--v~~~a~aGAD~vTVH~ea~----------------~~ti~~ai~~akk~-GikvgVD~l--- 284 (391)
T PRK13307 227 AFIVADLKTLDTGNLE--ARMAADATADAVVISGLAP----------------ISTIEKAIHEAQKT-GIYSILDML--- 284 (391)
T ss_pred CeEEEEecccChhhHH--HHHHHhcCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCEEEEEEc---
Confidence 4677888777777775 3334 45999999985432 23456677777664 544444211
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcc-cCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHG-RTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~-~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
+..+..+.++.+ ..++|.+.+|. ...+ .. ...|+-++++++.. +++|...|||+ .+++.++++.|+ .+||
T Consensus 285 np~tp~e~i~~l-~~~vD~Vllht~vdp~--~~-~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~aGADivVVGs 359 (391)
T PRK13307 285 NVEDPVKLLESL-KVKPDVVELHRGIDEE--GT-EHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALKAGADILVVGR 359 (391)
T ss_pred CCCCHHHHHHHh-hCCCCEEEEccccCCC--cc-cchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeH
Confidence 223455666666 67999999985 3333 22 23677888888754 78999999998 888999988765 9999
Q ss_pred ccCCCCCchHHHHHHHHHhcCCCCCcce
Q psy4398 256 NHYPVEKLPKTILYAHCKYKRFEVPKYE 283 (306)
Q Consensus 256 all~~p~~~~~~l~~~~~~~g~~~~~~~ 283 (306)
+++..+. ++..++++.+..+.+.++|+
T Consensus 360 aIf~a~D-p~~aak~l~~~i~~~~~~~~ 386 (391)
T PRK13307 360 AITKSKD-VRRAAEDFLNKLKPDIDQFR 386 (391)
T ss_pred HHhCCCC-HHHHHHHHHHhhccCchhhe
Confidence 9986443 44445555555555555443
|
|
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0006 Score=61.13 Aligned_cols=136 Identities=10% Similarity=0.060 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec--cC-CChH-HHHHHHH
Q psy4398 115 RALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR--VF-HNEA-DTIALCK 190 (306)
Q Consensus 115 ~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir--~g-~~~~-~~~~~a~ 190 (306)
...++...++.|+|.||+=+. +|.....+.+.+.+-++++++.++-++.+|+= .+ .+.+ .....++
T Consensus 85 K~~Ea~~Ai~~GAdEiD~Vin----------ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~ 154 (257)
T PRK05283 85 ALAETRAAIAYGADEVDVVFP----------YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASE 154 (257)
T ss_pred HHHHHHHHHHcCCCEEeeecc----------HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHH
Confidence 345555666679999998322 34444457788888888888776423444443 23 3444 4788999
Q ss_pred HHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-------CCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCCC
Q psy4398 191 RLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-------KIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVEK 262 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-------~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p~ 262 (306)
.+.++|+|+|--+.. ...+.+..+.++.+++.+ ++-|=++|||+|.+++.++++.+- .+|..-+. |.
T Consensus 155 ~a~~aGADFVKTSTG----f~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~lg~~~~~-~~ 229 (257)
T PRK05283 155 IAIKAGADFIKTSTG----KVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEILGADWAD-AR 229 (257)
T ss_pred HHHHhCCCEEEcCCC----CCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHhChhhcC-cc
Confidence 999999999975322 222334556555555553 477999999999999999999765 66665443 63
Q ss_pred chH
Q psy4398 263 LPK 265 (306)
Q Consensus 263 ~~~ 265 (306)
+-+
T Consensus 230 ~fR 232 (257)
T PRK05283 230 HFR 232 (257)
T ss_pred cEe
Confidence 333
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00066 Score=60.18 Aligned_cols=140 Identities=12% Similarity=0.174 Sum_probs=96.4
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEe
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKI 176 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 176 (306)
.+.++|.+.++..+.+-.+.++. |+|.+-+.+- +|+ ..+=.++++++++.. ++|+.+++
T Consensus 8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn---------------~~~G~~~v~~lr~~~~~~~lDvHL 72 (228)
T PTZ00170 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPN---------------LSFGPPVVKSLRKHLPNTFLDCHL 72 (228)
T ss_pred EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC---------------cCcCHHHHHHHHhcCCCCCEEEEE
Confidence 46678889999899998888875 8888666543 343 222245678888776 88999998
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------C----------------------------------
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------E---------------------------------- 209 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~---------------------------------- 209 (306)
-. .+....++.+.++|+|.+++|..... +
T Consensus 73 m~----~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~ 148 (228)
T PTZ00170 73 MV----SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVE 148 (228)
T ss_pred CC----CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcc
Confidence 82 34556668888899999998853200 0
Q ss_pred -CCCC----CCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 210 -RPRH----RNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 210 -~~~~----p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
+..+ +..++-++++++.. ...|...|||+ .+++..+.+.|+ .+||+++..+.
T Consensus 149 pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~-~~ti~~~~~aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 149 PGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGIN-LETIDIAADAGANVIVAGSSIFKAKD 209 (228)
T ss_pred cCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCC-HHHHHHHHHcCCCEEEEchHHhCCCC
Confidence 0000 11245566666655 46788889987 678888888765 99999987554
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.9e-05 Score=65.94 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+.+.|++.+++-+-.... ...+.+++++++|.+.+ .|+...|||+|.++++.+++.|+ .+|++.+.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~-~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~ 107 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAI-ENSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcc-cCCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhC
Confidence 468999999999999999987655321 12245889999999988 79999999999999999999876 89999999
Q ss_pred CCCch
Q psy4398 260 VEKLP 264 (306)
Q Consensus 260 ~p~~~ 264 (306)
||.+.
T Consensus 108 ~p~~l 112 (241)
T PRK14114 108 DPSFL 112 (241)
T ss_pred CHHHH
Confidence 99543
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=65.11 Aligned_cols=81 Identities=20% Similarity=0.171 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++|+.+.+.|++.+++-+-.... ..+.+++.++++.+....|+-..|||+|.++++.+++.|+ .+|+..+.|
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN 108 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 68899999999999999987655432 3345789999999854359999999999999999999876 999999999
Q ss_pred CCchHH
Q psy4398 261 EKLPKT 266 (306)
Q Consensus 261 p~~~~~ 266 (306)
|.+.+.
T Consensus 109 p~~~~~ 114 (232)
T PRK13586 109 FNLFHD 114 (232)
T ss_pred HHHHHH
Confidence 854433
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00092 Score=57.48 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=87.3
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc----cccCCc-----cccccCChHHH--------------
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF----SLTGGM-----GAALLSTPDIA-------------- 157 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~----~~~~~~-----G~~l~~~~~~~-------------- 157 (306)
.|++.=+.+.++++..+.++.+.+ |++.||+.+..|... ..++.| |+...-+.+.+
T Consensus 4 ~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p 83 (190)
T cd00452 4 QPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP 83 (190)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence 356666778889888888887754 899999976654210 001111 11111111111
Q ss_pred ---HHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEE
Q psy4398 158 ---CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIA 233 (306)
Q Consensus 158 ---~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia 233 (306)
.++++..++ .+.++.+-++ +.+-+..+.++|+|++-+... .+...++++.+++.+ ++|+++
T Consensus 84 ~~~~~~~~~~~~-~~~~~i~gv~-------t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~~~p~~a 148 (190)
T cd00452 84 GLDPEVVKAANR-AGIPLLPGVA-------TPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFPQVRFMP 148 (190)
T ss_pred CCCHHHHHHHHH-cCCcEECCcC-------CHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCCCCeEEE
Confidence 223333322 2444444333 223345556799999998532 123457888888887 699999
Q ss_pred ecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 234 NGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.||| +.+++.+.++.|+ .++++++
T Consensus 149 ~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 149 TGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred eCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 9999 8999999999865 7888877
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00059 Score=62.16 Aligned_cols=144 Identities=10% Similarity=0.113 Sum_probs=96.8
Q ss_pred CCCCceEEEecCC-CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 99 REKNKIILQIGTA-DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 99 ~~~~p~ivql~g~-~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
+...|+.+.|-+. +.+... +.++.||+.|.+..|. -.+.++.+...++++.... .+++|-.-+.
T Consensus 72 ~~~vPV~lHLDH~~~~e~i~---~Ai~~GftSVM~DgS~-----------l~~eeNi~~T~~vve~Ah~-~gv~VEaElG 136 (283)
T PRK07998 72 KMDVPVSLHLDHGKTFEDVK---QAVRAGFTSVMIDGAA-----------LPFEENIAFTKEAVDFAKS-YGVPVEAELG 136 (283)
T ss_pred HCCCCEEEECcCCCCHHHHH---HHHHcCCCEEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEec
Confidence 3467888888665 333333 3345699999885331 2345677788888877765 5777766655
Q ss_pred c--CCC---------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhCCCcEEEecCCCCH-HHHH
Q psy4398 178 V--FHN---------EADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHLKIPVIANGGSKEI-VDYG 244 (306)
Q Consensus 178 ~--g~~---------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~~ipvia~GGI~s~-~~~~ 244 (306)
. |.. ..+..+..+-+++.|+|.+-+.=.+..+.|.+| .+++.+++|++.+++|++..||-... ++.+
T Consensus 137 ~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~ 216 (283)
T PRK07998 137 AILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILR 216 (283)
T ss_pred cCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHH
Confidence 4 110 134555666677889999987655555555443 47899999999999999999997765 6677
Q ss_pred HHHHhhh---hhcccc
Q psy4398 245 GVFSLNC---AFLRNH 257 (306)
Q Consensus 245 ~~l~~~v---~vGral 257 (306)
++++.|+ -++|.+
T Consensus 217 ~ai~~Gi~KiNi~Tel 232 (283)
T PRK07998 217 SFVNYKVAKVNIASDL 232 (283)
T ss_pred HHHHcCCcEEEECHHH
Confidence 7887765 444443
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00086 Score=61.31 Aligned_cols=142 Identities=10% Similarity=0.101 Sum_probs=83.8
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-CC
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FH 180 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g~ 180 (306)
.|+++++.+... +..+.+.+..||+.|.+-.+. ..+.++.+...++++..+. .+++|-..+.. |.
T Consensus 75 vpv~lhlDH~~~--~e~i~~ai~~Gf~sVmid~s~-----------l~~~eni~~t~~v~~~a~~-~gv~Ve~ElG~~gg 140 (282)
T TIGR01859 75 VPVALHLDHGSS--YESCIKAIKAGFSSVMIDGSH-----------LPFEENLALTKKVVEIAHA-KGVSVEAELGTLGG 140 (282)
T ss_pred CeEEEECCCCCC--HHHHHHHHHcCCCEEEECCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEeeCCCcC
Confidence 678888765532 222222344578888774332 1223344455555544433 36666666654 11
Q ss_pred ----------ChHHHHHHHHHHHHcCCcEEEEcccCCCCCC--CCCCcHHHHHHHHhhCCCcEEEec--CCCCHHHHHHH
Q psy4398 181 ----------NEADTIALCKRLEACGIIAIGVHGRTKAERP--RHRNRIEMIRTLTQHLKIPVIANG--GSKEIVDYGGV 246 (306)
Q Consensus 181 ----------~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--~~p~~~~~v~~i~~~~~ipvia~G--GI~s~~~~~~~ 246 (306)
...+..+..+..++.|+|+|.++-.+..+.| .+..+++.+++|++.+++|+++-| ||. .+++.++
T Consensus 141 ~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~-~e~i~~~ 219 (282)
T TIGR01859 141 IEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIP-EEQIKKA 219 (282)
T ss_pred ccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCC-HHHHHHH
Confidence 0112334333334589999997433222222 234689999999999999999999 875 6778888
Q ss_pred HHhhh---hhccccC
Q psy4398 247 FSLNC---AFLRNHY 258 (306)
Q Consensus 247 l~~~v---~vGrall 258 (306)
++.|+ .++|.+.
T Consensus 220 i~~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 220 IKLGIAKINIDTDCR 234 (282)
T ss_pred HHcCCCEEEECcHHH
Confidence 88765 5666543
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0021 Score=61.02 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+.++.+. .||+.+.|..+-+ ..++.-.+.++++|+.++ +++.+-...+|+.+++.++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~--------------~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~ 208 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGP--------------GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRL 208 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc--------------hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHH
Confidence 7888888777665 5999999953211 114556788999999884 5677766667999999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC-HHHHHHHHHhhhhhccccCCCC-C----
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE-IVDYGGVFSLNCAFLRNHYPVE-K---- 262 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~~~~l~~~v~vGrall~~p-~---- 262 (306)
++.+++.++..+- ++. .+.+++..+++++.+++||.+.-.+.+ +++++++++.+. ...+--++ .
T Consensus 209 ~~~l~~~~l~~iE-------eP~-~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a--~d~v~~d~~~~GGi 278 (368)
T cd03329 209 GRALEELGFFWYE-------DPL-REASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGA--TDFLRADVNLVGGI 278 (368)
T ss_pred HHHhhhcCCCeEe-------CCC-CchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCC--CCEEecCccccCCH
Confidence 9999999877663 222 234678889999999999988777888 999999888632 01111133 1
Q ss_pred chHHHHHHHHHhcCCCCC
Q psy4398 263 LPKTILYAHCKYKRFEVP 280 (306)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~ 280 (306)
..-+.+.++.+++|++..
T Consensus 279 t~~~~ia~~a~~~gi~~~ 296 (368)
T cd03329 279 TGAMKTAHLAEAFGLDVE 296 (368)
T ss_pred HHHHHHHHHHHHcCCEEE
Confidence 222377788888888853
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=64.78 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++|+.+++.|++.+++........ ..+.++++++++++.+++|+...|||++.++++.+++.|+ .+|+.++.+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~-g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d 107 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKE-GGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN 107 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc-CCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 588999999999999999865443211 2245889999999999999999999999999999999865 888888887
Q ss_pred C
Q psy4398 261 E 261 (306)
Q Consensus 261 p 261 (306)
|
T Consensus 108 ~ 108 (230)
T TIGR00007 108 P 108 (230)
T ss_pred H
Confidence 7
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.1e-05 Score=66.83 Aligned_cols=88 Identities=7% Similarity=-0.007 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+++.|+..+|+-+-.. ..+.+.+.+++|++ +++||-..|||++ ++++.+++.|+ .+|++.+.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-YPGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-CCCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4689999999999999999876532 33557899999999 8899999999996 99999999986 99999999
Q ss_pred CCCchHHHHHHHHHhcC
Q psy4398 260 VEKLPKTILYAHCKYKR 276 (306)
Q Consensus 260 ~p~~~~~~l~~~~~~~g 276 (306)
||.+-..-++++.++.|
T Consensus 117 ~~~~~p~~v~~~~~~~G 133 (262)
T PLN02446 117 DGQIDLERLKDLVRLVG 133 (262)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 85222224455666655
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=61.03 Aligned_cols=143 Identities=12% Similarity=0.111 Sum_probs=89.8
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-- 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-- 178 (306)
..|+.+.|-|.+.+ .+.+.++.||+.|.+-.+. ..+.++.+...++++..+. .+++|-..+..
T Consensus 77 ~vPV~lHLDH~~~~---~i~~ai~~GftSVm~d~S~-----------l~~eEni~~t~~v~~~a~~-~gv~vE~ElG~i~ 141 (293)
T PRK07315 77 TVPVAIHLDHGHYE---DALECIEVGYTSIMFDGSH-----------LPVEENLKLAKEVVEKAHA-KGISVEAEVGTIG 141 (293)
T ss_pred CCcEEEECCCCCHH---HHHHHHHcCCCEEEEcCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEecCccc
Confidence 45888888766433 2223345688888885332 2233445555555554433 36676665543
Q ss_pred C-CC-----hH-HHHHHHHHHHHcCCcEEEEcccCCCCCC---CCCCcHHHHHHHHhhC-CCcEEEecC--CCCHHHHHH
Q psy4398 179 F-HN-----EA-DTIALCKRLEACGIIAIGVHGRTKAERP---RHRNRIEMIRTLTQHL-KIPVIANGG--SKEIVDYGG 245 (306)
Q Consensus 179 g-~~-----~~-~~~~~a~~l~~~G~d~i~v~~~~~~~~~---~~p~~~~~v~~i~~~~-~ipvia~GG--I~s~~~~~~ 245 (306)
| .+ .. ...+-|+.+.+.|+|+|-+.=.+..+.| ..+.+++.+++|++.+ ++|+++-|| |. .+++.+
T Consensus 142 g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~-~e~~~~ 220 (293)
T PRK07315 142 GEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIP-DDQIQE 220 (293)
T ss_pred CcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCC-HHHHHH
Confidence 1 11 01 2334455556899999987532222222 1247899999999999 599999999 65 678899
Q ss_pred HHHhhh---hhccccCC
Q psy4398 246 VFSLNC---AFLRNHYP 259 (306)
Q Consensus 246 ~l~~~v---~vGrall~ 259 (306)
+++.|+ .++|++..
T Consensus 221 ~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 221 AIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHHcCCCEEEEccHHHH
Confidence 998876 78888764
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0017 Score=59.28 Aligned_cols=137 Identities=9% Similarity=0.230 Sum_probs=82.5
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|+.+.|-|... +..+.+.++.||+.|.+-.+. ..+.++.+...++++..+. .+++|-..+..
T Consensus 67 ~~vPV~lHLDHg~~--~e~i~~ai~~Gf~SVM~D~S~-----------l~~eeNi~~t~~vv~~a~~-~gv~vE~ElG~v 132 (283)
T PRK08185 67 SPVPFVIHLDHGAT--IEDVMRAIRCGFTSVMIDGSL-----------LPYEENVALTKEVVELAHK-VGVSVEGELGTI 132 (283)
T ss_pred CCCCEEEECCCCCC--HHHHHHHHHcCCCEEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEeec
Confidence 35677777755431 222223344577777774332 2344556666666666543 47777666653
Q ss_pred CC---C---------hHHHHHHHHHHHHcCCcEEEE-----cccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC-H
Q psy4398 179 FH---N---------EADTIALCKRLEACGIIAIGV-----HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE-I 240 (306)
Q Consensus 179 g~---~---------~~~~~~~a~~l~~~G~d~i~v-----~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s-~ 240 (306)
|. + ..+..+..+..++.|+|++.+ |+....+. ....+++.+++|++.+++|+++-||+.. .
T Consensus 133 g~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~-kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~ 211 (283)
T PRK08185 133 GNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDK-KPELQMDLLKEINERVDIPLVLHGGSANPD 211 (283)
T ss_pred cCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCC-CCCcCHHHHHHHHHhhCCCEEEECCCCCCH
Confidence 11 0 112333344444559999998 55433221 1225799999999999999999999864 5
Q ss_pred HHHHHHHHhhh
Q psy4398 241 VDYGGVFSLNC 251 (306)
Q Consensus 241 ~~~~~~l~~~v 251 (306)
++.+++++.|+
T Consensus 212 e~~~~ai~~GI 222 (283)
T PRK08185 212 AEIAESVQLGV 222 (283)
T ss_pred HHHHHHHHCCC
Confidence 66777777765
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0027 Score=54.76 Aligned_cols=136 Identities=13% Similarity=0.068 Sum_probs=87.4
Q ss_pred CCceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE-ecc
Q psy4398 101 KNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK-IRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK-ir~ 178 (306)
+.|+++.+--.++..+ .++.+ +.|+|.|-+|... .++...++++.+++ .++++.+= +.
T Consensus 53 ~~~i~~~~~v~~~~~~--~~~~~~~aGad~i~~h~~~----------------~~~~~~~~i~~~~~-~g~~~~v~~~~- 112 (202)
T cd04726 53 DKIIVADLKTADAGAL--EAEMAFKAGADIVTVLGAA----------------PLSTIKKAVKAAKK-YGKEVQVDLIG- 112 (202)
T ss_pred CCEEEEEEEeccccHH--HHHHHHhcCCCEEEEEeeC----------------CHHHHHHHHHHHHH-cCCeEEEEEeC-
Confidence 4577776554454322 12333 4599999998432 12345667777775 36665553 33
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
+ .+..+..+ +.+.|+|++.++.....+....+...+.++++++..++|+++.|||+ .+++.++++.|+ .+||
T Consensus 113 -~--~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 113 -V--EDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred -C--CCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHHhcCCCEEEEee
Confidence 2 22334444 66689999988532211122124467888888877789999999996 999999998754 9999
Q ss_pred ccCCCC
Q psy4398 256 NHYPVE 261 (306)
Q Consensus 256 all~~p 261 (306)
+++...
T Consensus 188 ai~~~~ 193 (202)
T cd04726 188 AITGAA 193 (202)
T ss_pred hhcCCC
Confidence 998643
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00017 Score=64.51 Aligned_cols=81 Identities=12% Similarity=-0.024 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..+.++.+++.|+..+++..-.... ..+.+.++++++.+.+.+|+-..|||+|.++++.+++.++ .+|++.+.|
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~ 109 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALEN 109 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 56788899999999999987654332 3346889999999999999999999999999999999875 899999999
Q ss_pred CCchHH
Q psy4398 261 EKLPKT 266 (306)
Q Consensus 261 p~~~~~ 266 (306)
|.+.+.
T Consensus 110 p~~~~~ 115 (243)
T TIGR01919 110 PWWAAA 115 (243)
T ss_pred HHHHHH
Confidence 865543
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=63.49 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
++..+.|+.+.+.|+..+|+-+-+..-. ..+.+.+.++++.+.+++||=..|||+|.++++.+++.++ .+|+..+.
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~-g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~ 109 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKA-GGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVK 109 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeecccccc-CCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceec
Confidence 4689999999999999999865442211 2356889999999999999999999999999999999876 99999999
Q ss_pred CCCchHHHHHHHHHhcC
Q psy4398 260 VEKLPKTILYAHCKYKR 276 (306)
Q Consensus 260 ~p~~~~~~l~~~~~~~g 276 (306)
||.+.+ +|+++.|
T Consensus 110 ~p~~v~----~~~~~~g 122 (241)
T COG0106 110 NPDLVK----ELCEEYG 122 (241)
T ss_pred CHHHHH----HHHHHcC
Confidence 886553 4555555
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0015 Score=59.77 Aligned_cols=136 Identities=10% Similarity=0.141 Sum_probs=91.7
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g 179 (306)
.|+++.|-+.. ++..+.+.++.||+-|.+..|. -.+.++.+...++++.... .+++|-.-+.. |
T Consensus 78 VPV~lHLDHg~--~~e~i~~ai~~GftSVM~DgS~-----------lp~eeNi~~Trevv~~Ah~-~gv~VEaElG~igg 143 (285)
T PRK07709 78 VPVAIHLDHGS--SFEKCKEAIDAGFTSVMIDASH-----------HPFEENVETTKKVVEYAHA-RNVSVEAELGTVGG 143 (285)
T ss_pred CcEEEECCCCC--CHHHHHHHHHcCCCEEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEeccCC
Confidence 57888886553 2333334455688888885442 2345677788888877754 47777766654 1
Q ss_pred C-C--------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCCH-HHHHHHH
Q psy4398 180 H-N--------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKEI-VDYGGVF 247 (306)
Q Consensus 180 ~-~--------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s~-~~~~~~l 247 (306)
. + ..+..+..+-+++.|+|.+-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-..+ ++.++++
T Consensus 144 ~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai 223 (285)
T PRK07709 144 QEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAI 223 (285)
T ss_pred ccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHH
Confidence 1 0 22345555555678999998765555555543 358899999999999999999997765 6778888
Q ss_pred Hhhh
Q psy4398 248 SLNC 251 (306)
Q Consensus 248 ~~~v 251 (306)
+.|+
T Consensus 224 ~~Gi 227 (285)
T PRK07709 224 SLGT 227 (285)
T ss_pred HcCC
Confidence 8765
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0031 Score=54.97 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=87.6
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCcccc----ccCCcccc------ccCChHHHH------------
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFS----LTGGMGAA------LLSTPDIAC------------ 158 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~----~~~~~G~~------l~~~~~~~~------------ 158 (306)
.+++.=+.+.++++..+.++.+.+ |+..+|+-+..|.... .+..|+.. -.-+.+.+.
T Consensus 10 ~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivs 89 (206)
T PRK09140 10 LPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVT 89 (206)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEEC
Confidence 467777888899999999997765 8999999766554210 00112110 001111111
Q ss_pred -----HHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcE
Q psy4398 159 -----NILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPV 231 (306)
Q Consensus 159 -----eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipv 231 (306)
++++..+ ..+.++..-+. +.+-+..+.+.|+|++.+.. ..+..+++++.+++.+ ++|+
T Consensus 90 p~~~~~v~~~~~-~~~~~~~~G~~-------t~~E~~~A~~~Gad~vk~Fp-------a~~~G~~~l~~l~~~~~~~ipv 154 (206)
T PRK09140 90 PNTDPEVIRRAV-ALGMVVMPGVA-------TPTEAFAALRAGAQALKLFP-------ASQLGPAGIKALRAVLPPDVPV 154 (206)
T ss_pred CCCCHHHHHHHH-HCCCcEEcccC-------CHHHHHHHHHcCCCEEEECC-------CCCCCHHHHHHHHhhcCCCCeE
Confidence 1111111 11222222211 12334556679999998743 1234578999999988 4999
Q ss_pred EEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 232 IANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
++.||| +.+++.+.++.|+ .++++++..
T Consensus 155 vaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 155 FAVGGV-TPENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred EEECCC-CHHHHHHHHHCCCeEEEEehHhccc
Confidence 999999 6899999998854 889999863
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00025 Score=63.07 Aligned_cols=130 Identities=13% Similarity=0.158 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc---ccccEEEEeccCCC--------hHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN---LSIPVSCKIRVFHN--------EAD 184 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~---~~~pv~vKir~g~~--------~~~ 184 (306)
..++.+.++.|+|+|++-+.. |.....+.+...+-++++++. .++|+++-.-. .+ .+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~----------~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~ 147 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINY----------GALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDL 147 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEH----------HHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHH
T ss_pred HHHHHHHHHcCCceeeeeccc----------cccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHH
Confidence 455555556799999985331 111112233344444444443 37888877332 11 123
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCc----EEEecCC------CCHHHHHHHHHhhh---
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIP----VIANGGS------KEIVDYGGVFSLNC--- 251 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ip----via~GGI------~s~~~~~~~l~~~v--- 251 (306)
....++.+.+.|+|.|-..-... ....+.+.+.++++.+...+| |.++||| .+.+++.++++.|+
T Consensus 148 I~~a~ria~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~ 225 (236)
T PF01791_consen 148 IARAARIAAELGADFVKTSTGKP--VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRI 225 (236)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS--SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEE
T ss_pred HHHHHHHHHHhCCCEEEecCCcc--ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhH
Confidence 68888999999999998753311 111112455666666666889 9999999 88888888777654
Q ss_pred --hhccccC
Q psy4398 252 --AFLRNHY 258 (306)
Q Consensus 252 --~vGrall 258 (306)
..||.++
T Consensus 226 G~~~Gr~i~ 234 (236)
T PF01791_consen 226 GTSSGRNIW 234 (236)
T ss_dssp EEEEHHHHH
T ss_pred HHHHHHHHH
Confidence 7777654
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0032 Score=56.39 Aligned_cols=185 Identities=15% Similarity=0.104 Sum_probs=108.2
Q ss_pred CceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec-
Q psy4398 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG- 109 (306)
Q Consensus 31 n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~- 109 (306)
+..+.+|.+ -|..-..++.+.|+..+++......... +.+ ..+.++-....+ ......+....|+++.+-
T Consensus 8 ~~~i~~~~~--~D~~sA~~~e~~G~~ai~~s~~~~~~s~-G~p-D~~~~~~~e~~~-----~~~~I~~~~~~Pv~~D~~~ 78 (243)
T cd00377 8 GGPLVLPGA--WDALSARLAERAGFKAIYTSGAGVAASL-GLP-DGGLLTLDEVLA-----AVRRIARAVDLPVIADADT 78 (243)
T ss_pred CCcEEecCC--CCHHHHHHHHHcCCCEEEeccHHHHHhc-CCC-CCCcCCHHHHHH-----HHHHHHhhccCCEEEEcCC
Confidence 344444444 5666666677889988777643221111 111 001111000000 001112223568888753
Q ss_pred -CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc----cccEEEEecc---C-
Q psy4398 110 -TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL----SIPVSCKIRV---F- 179 (306)
Q Consensus 110 -g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~----~~pv~vKir~---g- 179 (306)
..++++..+.++++. .|+++|.|.=....+ +.+..|+...-.++...+.+++++++. +++|.++.-. +
T Consensus 79 G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k--~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~ 156 (243)
T cd00377 79 GYGNALNVARTVRELEEAGAAGIHIEDQVGPK--KCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGE 156 (243)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCc--cccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccC
Confidence 346677888777665 599999995443221 112223333445666666677776654 3455555222 3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEec
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~G 235 (306)
...+++++-++.+.++|+|.+-+++.. +.+.++++.+..+.|++.+-
T Consensus 157 ~~~~eai~Ra~ay~~AGAD~v~v~~~~---------~~~~~~~~~~~~~~Pl~~~~ 203 (243)
T cd00377 157 EGLDEAIERAKAYAEAGADGIFVEGLK---------DPEEIRAFAEAPDVPLNVNM 203 (243)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC---------CHHHHHHHHhcCCCCEEEEe
Confidence 357889999999999999999987542 66899999999999988873
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0022 Score=58.63 Aligned_cols=136 Identities=9% Similarity=0.120 Sum_probs=90.9
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g 179 (306)
.|+.+.|-+... +..+.+.++.||.-|.+..|. -.+.++.+...++++..+. .+++|-.-+.. |
T Consensus 78 vPV~lHLDHg~~--~e~i~~ai~~GftSVM~DgS~-----------l~~eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg 143 (286)
T PRK08610 78 IPVAIHLDHGSS--FEKCKEAIDAGFTSVMIDASH-----------SPFEENVATTKKVVEYAHE-KGVSVEAELGTVGG 143 (286)
T ss_pred CCEEEECCCCCC--HHHHHHHHHcCCCEEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEeccCC
Confidence 578888765532 333333445588888875332 2456677888888877653 46776666554 1
Q ss_pred C-C--------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCCH-HHHHHHH
Q psy4398 180 H-N--------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKEI-VDYGGVF 247 (306)
Q Consensus 180 ~-~--------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s~-~~~~~~l 247 (306)
. + ..+..+..+-+++.|+|.|-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-..+ ++.++++
T Consensus 144 ~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai 223 (286)
T PRK08610 144 QEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAI 223 (286)
T ss_pred ccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHH
Confidence 1 0 12344555555678999998866665555543 357899999999999999999998765 6677888
Q ss_pred Hhhh
Q psy4398 248 SLNC 251 (306)
Q Consensus 248 ~~~v 251 (306)
+.|+
T Consensus 224 ~~GI 227 (286)
T PRK08610 224 PFGT 227 (286)
T ss_pred HCCC
Confidence 7765
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0023 Score=62.04 Aligned_cols=117 Identities=13% Similarity=0.170 Sum_probs=79.8
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE-eccCCChHHHHHHHHHHHHcCCcEEEE
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK-IRVFHNEADTIALCKRLEACGIIAIGV 202 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK-ir~g~~~~~~~~~a~~l~~~G~d~i~v 202 (306)
+.|+|+|-++... +...+.++++.+++ .+.++.+. ++ . .+..+.++.+.+.|+|+|.+
T Consensus 79 ~aGAdgV~v~g~~----------------~~~~~~~~i~~a~~-~G~~~~~g~~s--~--~t~~e~~~~a~~~GaD~I~~ 137 (430)
T PRK07028 79 KAGADIVCILGLA----------------DDSTIEDAVRAARK-YGVRLMADLIN--V--PDPVKRAVELEELGVDYINV 137 (430)
T ss_pred HcCCCEEEEecCC----------------ChHHHHHHHHHHHH-cCCEEEEEecC--C--CCHHHHHHHHHhcCCCEEEE
Confidence 4599998876221 11124566777666 46666654 33 2 23345567788899999987
Q ss_pred cccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCc
Q psy4398 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKL 263 (306)
Q Consensus 203 ~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~ 263 (306)
+.....+.. ++..++.++++++.+++||++.||| +.+++.++++.| +.+||+++..+.+
T Consensus 138 ~pg~~~~~~-~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~ 199 (430)
T PRK07028 138 HVGIDQQML-GKDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADV 199 (430)
T ss_pred Eeccchhhc-CCChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCH
Confidence 643221111 2345688999999889999999999 588899988875 4999999976543
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0029 Score=57.81 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=90.8
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|++++|-|.. +|..+.+.++.||+-|.+..|. ..+.++.+...++++..+. .+++|-.-+..
T Consensus 73 ~~VPV~lHLDHg~--~~e~i~~Ai~~GftSVM~DgS~-----------l~~eeNi~~T~~vv~~Ah~-~gv~VEaElG~v 138 (284)
T PRK09195 73 YHHPLALHLDHHE--KFDDIAQKVRSGVRSVMIDGSH-----------LPFAQNISLVKEVVDFCHR-FDVSVEAELGRL 138 (284)
T ss_pred CCCCEEEECCCCC--CHHHHHHHHHcCCCEEEeCCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEecc
Confidence 4578888886654 2333334445688888885332 2456777888888877764 46666665553
Q ss_pred C-C--C---------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCC-HHHH
Q psy4398 179 F-H--N---------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243 (306)
Q Consensus 179 g-~--~---------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~ 243 (306)
| . + ..+..+..+-+++.|+|.+-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-.. .++.
T Consensus 139 gg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~ 218 (284)
T PRK09195 139 GGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDI 218 (284)
T ss_pred cCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHH
Confidence 1 1 0 12334444555578999998765555555533 35889999999999999999999665 4556
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 219 ~~ai~~Gi 226 (284)
T PRK09195 219 QQTIKLGI 226 (284)
T ss_pred HHHHHcCC
Confidence 77777765
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0034 Score=57.33 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=93.2
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 99 REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
+...|+.++|-|.. ++..+.+.++.||.-|.+..|. -.++++.+...++++..+. .+++|-.-+..
T Consensus 72 ~~~VPValHLDHg~--~~e~i~~ai~~GFtSVM~DgS~-----------lp~eeNi~~T~evv~~Ah~-~gv~VEaElG~ 137 (286)
T PRK12738 72 TYNMPLALHLDHHE--SLDDIRRKVHAGVRSAMIDGSH-----------FPFAENVKLVKSVVDFCHS-QDCSVEAELGR 137 (286)
T ss_pred HCCCCEEEECCCCC--CHHHHHHHHHcCCCeEeecCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEEe
Confidence 34678888887654 2333334445699999986442 2356677888888887765 36666655543
Q ss_pred --CC-------C----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCC-HHH
Q psy4398 179 --FH-------N----EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKE-IVD 242 (306)
Q Consensus 179 --g~-------~----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s-~~~ 242 (306)
|. + ..+..+..+-+++.|+|.|-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-.. .++
T Consensus 138 igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~ 217 (286)
T PRK12738 138 LGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEF 217 (286)
T ss_pred eCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHH
Confidence 10 0 12344555556678999999866665555543 35899999999999999999999665 455
Q ss_pred HHHHHHhhh
Q psy4398 243 YGGVFSLNC 251 (306)
Q Consensus 243 ~~~~l~~~v 251 (306)
.+++++.|+
T Consensus 218 ~~kai~~GI 226 (286)
T PRK12738 218 VRRTIELGV 226 (286)
T ss_pred HHHHHHcCC
Confidence 677777765
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0033 Score=57.46 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=91.1
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|++++|-|... +..+.+.++.||.-|.+..|. -.+.++.+...++++..+. .+++|-.-+..
T Consensus 73 ~~VPValHLDH~~~--~e~i~~ai~~GftSVMiDgS~-----------lp~eeNi~~T~~vv~~Ah~-~gvsVEaElG~i 138 (284)
T PRK12737 73 YNIPLALHLDHHED--LDDIKKKVRAGIRSVMIDGSH-----------LSFEENIAIVKEVVEFCHR-YDASVEAELGRL 138 (284)
T ss_pred CCCCEEEECCCCCC--HHHHHHHHHcCCCeEEecCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEeec
Confidence 45688888865542 333334445688888885442 2355677788888877765 36666665553
Q ss_pred C-C--C---------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCC-HHHH
Q psy4398 179 F-H--N---------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243 (306)
Q Consensus 179 g-~--~---------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~ 243 (306)
| . + ..+..+..+-+++.|+|.+-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-.. .++.
T Consensus 139 gg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~ 218 (284)
T PRK12737 139 GGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDV 218 (284)
T ss_pred cCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Confidence 1 1 0 12344555555668999998865555555543 25889999999999999999999764 4556
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 219 ~kai~~Gi 226 (284)
T PRK12737 219 KKAISLGI 226 (284)
T ss_pred HHHHHCCC
Confidence 77777765
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0021 Score=56.33 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=115.6
Q ss_pred HHcCCCEEEecceechhhhhhhh-hhhcccccccccCCCCCceeeec-CCCCCCceEEEecCCCHHHHHHHHHHHhc-CC
Q psy4398 51 LDYGADLVYSEELVDHKLVKTER-KVNDLLNTIDFVDPLDGSVVFRT-CPREKNKIILQIGTADPERALEAAKKVEH-DV 127 (306)
Q Consensus 51 ~~~G~g~~~te~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~ 127 (306)
.++|++.++.|-....|...... .+-. .+ ..+.+. ..+-+.|+.+|+.-+++ ..+..++.. |+
T Consensus 44 eegG~DavivEN~gD~Pf~k~v~~~tva---aM--------a~iv~~v~r~v~iPvGvNVLrNd~---vaA~~IA~a~gA 109 (263)
T COG0434 44 EEGGVDAVIVENYGDAPFLKDVGPETVA---AM--------AVIVREVVREVSIPVGVNVLRNDA---VAALAIAYAVGA 109 (263)
T ss_pred HhCCCcEEEEeccCCCCCCCCCChHHHH---HH--------HHHHHHHHHhccccceeeeecccc---HHHHHHHHhcCC
Confidence 46899999999766555432110 0000 00 001111 12346899999988776 445556665 89
Q ss_pred CEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc--cEEEEeccCCChHHHHHHHHH-HHHcCCcEEEEcc
Q psy4398 128 AAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI--PVSCKIRVFHNEADTIALCKR-LEACGIIAIGVHG 204 (306)
Q Consensus 128 d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir~g~~~~~~~~~a~~-l~~~G~d~i~v~~ 204 (306)
+.|-.|.-|-.. .++ .+-++-+...+.+.-..+...+.+ .+-||-..-....+..+.++- ++..++|+++++|
T Consensus 110 ~FIRVN~~tg~~--~td--qGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG 185 (263)
T COG0434 110 DFIRVNVLTGAY--ATD--QGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTG 185 (263)
T ss_pred CEEEEEeeeceE--ecc--cceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEec
Confidence 999999765321 111 134555666666665665533321 233444432222244455544 7778899999998
Q ss_pred cCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccCCC
Q psy4398 205 RTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYPV 260 (306)
Q Consensus 205 ~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~~ 260 (306)
..-. .+++.+.++.+++.++.|+++.-|++ .+.+.+.++. |+.+|+.+=.|
T Consensus 186 ~~TG----~~~d~~el~~a~~~~~~pvlvGSGv~-~eN~~~~l~~adG~IvgT~lK~~ 238 (263)
T COG0434 186 SRTG----SPPDLEELKLAKEAVDTPVLVGSGVN-PENIEELLKIADGVIVGTSLKKG 238 (263)
T ss_pred ccCC----CCCCHHHHHHHHhccCCCEEEecCCC-HHHHHHHHHHcCceEEEEEEccC
Confidence 6422 35688999999999999999999975 7888888875 88999987543
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0033 Score=57.34 Aligned_cols=138 Identities=12% Similarity=0.123 Sum_probs=91.7
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|+.++|-+.. ++..+.+.++.||+-|.+..|. ..+.++.+...++++..+. .+++|-.-+..
T Consensus 71 ~~VPValHLDHg~--~~e~i~~ai~~GFtSVM~DgS~-----------lp~eeNi~~T~~vv~~Ah~-~gv~VEaElG~v 136 (282)
T TIGR01858 71 YNMPLALHLDHHE--SLDDIRQKVHAGVRSAMIDGSH-----------FPFAQNVKLVKEVVDFCHR-QDCSVEAELGRL 136 (282)
T ss_pred CCCCEEEECCCCC--CHHHHHHHHHcCCCEEeecCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEEec
Confidence 4578888886554 2333334445688888886442 2355677888888877755 46676665553
Q ss_pred -C---C----C----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCC-HHHH
Q psy4398 179 -F---H----N----EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243 (306)
Q Consensus 179 -g---~----~----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~ 243 (306)
| . + ..+..+..+-+++.|+|.|-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-.. .++.
T Consensus 137 gg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~ 216 (282)
T TIGR01858 137 GGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDV 216 (282)
T ss_pred CCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHH
Confidence 1 0 0 12234555556679999998765555555543 35899999999999999999999765 4556
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 217 ~~ai~~Gi 224 (282)
T TIGR01858 217 RRTIELGI 224 (282)
T ss_pred HHHHHcCC
Confidence 77777665
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00021 Score=70.80 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCC--CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCH-----------HHHHHHHHh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKA--ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI-----------VDYGGVFSL 249 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~--~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~-----------~~~~~~l~~ 249 (306)
.+.+++|+.+.+.|+|.|++-+.+.. +......++++++++.+.+.+|+...|||+|. ++++.+++.
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~ 346 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRS 346 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHc
Confidence 35899999999999999998766542 22223346899999999999999999999997 668999988
Q ss_pred hh---hhccccCCCC
Q psy4398 250 NC---AFLRNHYPVE 261 (306)
Q Consensus 250 ~v---~vGrall~~p 261 (306)
|+ .+|++.+.+|
T Consensus 347 GadkV~i~s~Av~~~ 361 (538)
T PLN02617 347 GADKISIGSDAVYAA 361 (538)
T ss_pred CCCEEEEChHHHhCh
Confidence 76 9999988876
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0031 Score=57.37 Aligned_cols=137 Identities=11% Similarity=0.144 Sum_probs=93.2
Q ss_pred CCCceEEEecCC-CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 100 EKNKIILQIGTA-DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 100 ~~~p~ivql~g~-~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
...|++++|-|. +.+... +.++.||+-|.+..|. -.+.++.+...++++..+.. +++|-.-+..
T Consensus 68 ~~VPV~lHLDH~~~~~~i~---~ai~~GftSVMiD~S~-----------l~~eeNi~~t~~vv~~ah~~-gv~VEaElG~ 132 (276)
T cd00947 68 ASVPVALHLDHGSSFELIK---RAIRAGFSSVMIDGSH-----------LPFEENVAKTKEVVELAHAY-GVSVEAELGR 132 (276)
T ss_pred CCCCEEEECCCCCCHHHHH---HHHHhCCCEEEeCCCC-----------CCHHHHHHHHHHHHHHHHHc-CCeEEEEEee
Confidence 467899999765 444433 3345699999996442 23556778888888877653 6666665553
Q ss_pred --CCC---------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---CCcHHHHHHHHhhCCCcEEEecCCCCH-HHH
Q psy4398 179 --FHN---------EADTIALCKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEI-VDY 243 (306)
Q Consensus 179 --g~~---------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---p~~~~~v~~i~~~~~ipvia~GGI~s~-~~~ 243 (306)
|.. ..+..+..+-+++.|+|.|-++=.+..+.|.+ ..+++.+++|++.+++|++..||-..+ ++.
T Consensus 133 i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~ 212 (276)
T cd00947 133 IGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQI 212 (276)
T ss_pred ecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Confidence 110 12244444555567999998765555555533 368999999999999999999998765 557
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 213 ~~ai~~Gi 220 (276)
T cd00947 213 RKAIKLGV 220 (276)
T ss_pred HHHHHcCC
Confidence 88888765
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0045 Score=56.57 Aligned_cols=138 Identities=12% Similarity=0.141 Sum_probs=90.5
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|++++|-|.. ++..+.+.++.||+-|.+..|. -.++++.+...++++..+. .+++|-.-+..
T Consensus 73 ~~VPValHLDH~~--~~e~i~~ai~~GftSVM~DgS~-----------lp~eeNi~~T~~vv~~Ah~-~gvsVEaElG~v 138 (284)
T PRK12857 73 ASVPVALHLDHGT--DFEQVMKCIRNGFTSVMIDGSK-----------LPLEENIALTKKVVEIAHA-VGVSVEAELGKI 138 (284)
T ss_pred CCCCEEEECCCCC--CHHHHHHHHHcCCCeEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEeeec
Confidence 4568888886553 2223333344588888885332 2456777888888877754 46666665553
Q ss_pred CC--------C----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCC-HHHH
Q psy4398 179 FH--------N----EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243 (306)
Q Consensus 179 g~--------~----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~ 243 (306)
|. + ..+..+..+-+++.|+|.|-+.-.+..+.|.+ ..+++.+++|++.+++|++..||-.. .++.
T Consensus 139 gg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~ 218 (284)
T PRK12857 139 GGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAI 218 (284)
T ss_pred CCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Confidence 10 0 11334444455678999998866655555543 35889999999999999999999765 4556
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 219 ~~ai~~Gi 226 (284)
T PRK12857 219 RKAISLGV 226 (284)
T ss_pred HHHHHcCC
Confidence 77777765
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00083 Score=60.50 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCc------cccc--cCChHHHHHHHHHHH-hcccccEEEEeccCC
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGM------GAAL--LSTPDIACNILTTLI-SNLSIPVSCKIRVFH 180 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~------G~~l--~~~~~~~~eiv~~v~-~~~~~pv~vKir~g~ 180 (306)
.+.+.+.++++.+.+ |+|.|||-+....+ ..||- --++ .-+.+.+.++++.+| +..+.|+.+-.- +
T Consensus 21 P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP--~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y--~ 96 (259)
T PF00290_consen 21 PDLETTLEILKALEEAGADIIEIGIPFSDP--VADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTY--Y 96 (259)
T ss_dssp SSHHHHHHHHHHHHHTTBSSEEEE--SSSC--TTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE---H
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEee--c
Confidence 466889999998775 99999996543221 22210 0011 125677888999999 777889877654 2
Q ss_pred Ch---HHHHHHHHHHHHcCCcEEEEccc--------------------------CC-----------CC--------CCC
Q psy4398 181 NE---ADTIALCKRLEACGIIAIGVHGR--------------------------TK-----------AE--------RPR 212 (306)
Q Consensus 181 ~~---~~~~~~a~~l~~~G~d~i~v~~~--------------------------~~-----------~~--------~~~ 212 (306)
+. -...++++.+.++|+|++.+-+- +. .+ +..
T Consensus 97 N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvT 176 (259)
T PF00290_consen 97 NPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVT 176 (259)
T ss_dssp HHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSS
T ss_pred cHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCC
Confidence 21 11445677777777777776331 10 00 001
Q ss_pred C---C--C-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccCC
Q psy4398 213 H---R--N-RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYP 259 (306)
Q Consensus 213 ~---p--~-~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~ 259 (306)
| . . -.++++++++.+++||+..=||++.++++++... |+.+|+++++
T Consensus 177 G~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 177 GSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLAAGADGVIVGSAFVK 231 (259)
T ss_dssp STTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHHTTSSEEEESHHHHH
T ss_pred CCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHHccCCEEEECHHHHH
Confidence 1 1 1 2467899999999999999999999999998843 7899999864
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >KOG2550|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0045 Score=58.26 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEccc------CC----CCCCCCCCcHHHHHHHH
Q psy4398 156 IACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR------TK----AERPRHRNRIEMIRTLT 224 (306)
Q Consensus 156 ~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~------~~----~~~~~~p~~~~~v~~i~ 224 (306)
+-.++++.+++.. ...|+..-- -+.+-++.|-++|+|++.|--. +. -++..+. ...-+.+.+
T Consensus 278 ~qiemik~iK~~yP~l~ViaGNV------VT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~T-AVy~va~~A 350 (503)
T KOG2550|consen 278 YQLEMIKYIKETYPDLQIIAGNV------VTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGT-AVYKVAEFA 350 (503)
T ss_pred hHHHHHHHHHhhCCCceeeccce------eeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCccc-chhhHHHHH
Confidence 3456667776654 222222111 1346777788899999987322 21 2333333 344456667
Q ss_pred hhCCCcEEEecCCCCHHHHHHHHHhh---hhhcccc
Q psy4398 225 QHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNH 257 (306)
Q Consensus 225 ~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGral 257 (306)
..+++|||+-|||.++-+.-+++..+ |++|.-|
T Consensus 351 ~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lL 386 (503)
T KOG2550|consen 351 NQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLL 386 (503)
T ss_pred HhcCCceeecCCcCccchhHhhhhcCchhheeccee
Confidence 77799999999999999999888765 4777543
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0043 Score=56.84 Aligned_cols=137 Identities=10% Similarity=0.153 Sum_probs=90.1
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-C
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-F 179 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g 179 (306)
..|++++|-+... +..+.+.++.||+-|.+..|. ..+.++.+...++++..+. .+++|-.-+.. |
T Consensus 77 ~VPV~lHLDHg~~--~e~i~~ai~~GftSVMiDgS~-----------lp~eeNi~~T~~vv~~Ah~-~gv~VEaElG~vg 142 (288)
T TIGR00167 77 GVPVALHLDHGAS--EEDCAQAVKAGFSSVMIDGSH-----------EPFEENIELTKKVVERAHK-MGVSVEAELGTLG 142 (288)
T ss_pred CCcEEEECCCCCC--HHHHHHHHHcCCCEEEecCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEeecc
Confidence 5678888865532 222223344588888885442 2355677788888877654 36676666553 1
Q ss_pred -C-C----------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-C--CcHHHHHHHHhhCCCcEEEecCCCCH-HHH
Q psy4398 180 -H-N----------EADTIALCKRLEACGIIAIGVHGRTKAERPRH-R--NRIEMIRTLTQHLKIPVIANGGSKEI-VDY 243 (306)
Q Consensus 180 -~-~----------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p--~~~~~v~~i~~~~~ipvia~GGI~s~-~~~ 243 (306)
. + ..+..+..+-+++.|+|.|-+.=.+..+.|.+ | .+++.+++|++.+++|++..||-..+ ++.
T Consensus 143 g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~ 222 (288)
T TIGR00167 143 GEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEI 222 (288)
T ss_pred CccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Confidence 0 0 11234444444568999999866555555532 3 58999999999999999999998765 577
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 223 ~~ai~~Gi 230 (288)
T TIGR00167 223 KKAISLGV 230 (288)
T ss_pred HHHHHcCC
Confidence 88888765
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0011 Score=64.06 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCC--------CCCCCcHHHHHHH
Q psy4398 153 TPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER--------PRHRNRIEMIRTL 223 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~--------~~~p~~~~~v~~i 223 (306)
.++.+.++|..+|+.. ..+|+||+-.+...+ .++--..++++|.|+|+|...... +.+-+..-.+.+.
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~v~---~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~ 362 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHGVG---TIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAET 362 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccchH---HHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHH
Confidence 4778899999998875 467999999643322 222227789999999987543221 1221111122333
Q ss_pred HhhC-------CCcEEEecCCCCHHHHHHHHHh
Q psy4398 224 TQHL-------KIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 224 ~~~~-------~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+.+ .+-|++.||+.|..|.-.++..
T Consensus 363 ~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aL 395 (485)
T COG0069 363 HQTLVLNGLRDKVKLIADGGLRTGADVAKAAAL 395 (485)
T ss_pred HHHHHHcCCcceeEEEecCCccCHHHHHHHHHh
Confidence 3332 4789999999999998777764
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.006 Score=54.46 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec---CCCHHHH
Q psy4398 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG---TADPERA 116 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~---g~~~~~~ 116 (306)
+.-|.....++.+.|+..+++...... ...+.+. ...++-.+...- -+.+.+.+ ...|+++-+= +.++++.
T Consensus 18 ~ayD~~sA~i~e~aG~dai~v~~s~~a-~~~G~pD-~~~vtl~em~~~--~~~I~r~~--~~~pviaD~~~G~g~~~~~~ 91 (240)
T cd06556 18 TAYDYSMAKQFADAGLNVMLVGDSQGM-TVAGYDD-TLPYPVNDVPYH--VRAVRRGA--PLALIVADLPFGAYGAPTAA 91 (240)
T ss_pred cCCCHHHHHHHHHcCCCEEEEChHHHH-HhcCCCC-CCCcCHHHHHHH--HHHHHhhC--CCCCEEEeCCCCCCcCHHHH
Confidence 456777777787899988888643221 1111110 001100000000 00111111 1248888872 4466777
Q ss_pred HHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC---------------
Q psy4398 117 LEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH--------------- 180 (306)
Q Consensus 117 ~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~--------------- 180 (306)
.+.++++. .|+++|.|- | + ....+.+++++++ +++|..++...+
T Consensus 92 ~~~~~~l~~aGa~gv~iE----------D--~-------~~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~ 151 (240)
T cd06556 92 FELAKTFMRAGAAGVKIE----------G--G-------EWHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRG 151 (240)
T ss_pred HHHHHHHHHcCCcEEEEc----------C--c-------HHHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccC
Confidence 77777665 599999994 1 1 1234556677655 478888877521
Q ss_pred --ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 181 --NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 181 --~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
..+++++=++.++++|+|.|.+.+. ..+.++++.+.+++|++++|.
T Consensus 152 ~~~~~~ai~Ra~ay~~AGAd~i~~e~~----------~~e~~~~i~~~~~~P~~~~ga 199 (240)
T cd06556 152 DEAGEQLIADALAYAPAGADLIVMECV----------PVELAKQITEALAIPLAGIGA 199 (240)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhCCCCEEEEec
Confidence 1345777889999999999998642 458899999999999999876
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0066 Score=57.35 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=104.2
Q ss_pred CceEEEecCCCHHHHHHHHHH-HhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~-~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~ 178 (306)
.|+-.++...+++++.+.++. .++||..+-+.+|- .+++.-.+.++++|+.++ +.+.+-...
T Consensus 131 v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~ 195 (355)
T cd03321 131 VQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDYNQ 195 (355)
T ss_pred eeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 455555555566776655554 45699988886542 123444677889998874 456665555
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHY 258 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall 258 (306)
+|+.+++.++++.+++.+++.|- ++. .+.+++..+++++.+++||.+.-.+.++.+++.+++... ...+-
T Consensus 196 ~~~~~~A~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~--~d~i~ 265 (355)
T cd03321 196 SLTVPEAIERGQALDQEGLTWIE-------EPT-LQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGA--CDLVM 265 (355)
T ss_pred CcCHHHHHHHHHHHHcCCCCEEE-------CCC-CCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCC--CCeEe
Confidence 79999999999999999988875 222 245788999999999999998888899999999887532 00011
Q ss_pred CCC-C----chHHHHHHHHHhcCCCC
Q psy4398 259 PVE-K----LPKTILYAHCKYKRFEV 279 (306)
Q Consensus 259 ~~p-~----~~~~~l~~~~~~~g~~~ 279 (306)
-++ . ..-..+.++.+++|++.
T Consensus 266 ~~~~~~GGit~~~~ia~~A~~~gi~~ 291 (355)
T cd03321 266 PDLMKIGGVTGWLRASALAEQAGIPM 291 (355)
T ss_pred cCHhhhCCHHHHHHHHHHHHHcCCee
Confidence 122 1 11126667777888774
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.004 Score=54.51 Aligned_cols=130 Identities=16% Similarity=0.087 Sum_probs=87.9
Q ss_pred HHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC---------------
Q psy4398 116 ALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF--------------- 179 (306)
Q Consensus 116 ~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g--------------- 179 (306)
..+.++.+.+ |-|+|.+ ||+..-..+.+.++++++|+..++|++.-.+..
T Consensus 30 ~~ei~~~~~~~GTDaImI--------------GGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~sv 95 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMI--------------GGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPSV 95 (240)
T ss_pred cHHHHHHHHHcCCCEEEE--------------CCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEEE
Confidence 4555565554 9999999 455555678899999999998899988875530
Q ss_pred -------CChHHHHHHHHHHHHcCCc-----EEEEcc----------c----C-----------------------CCCC
Q psy4398 180 -------HNEADTIALCKRLEACGII-----AIGVHG----------R----T-----------------------KAER 210 (306)
Q Consensus 180 -------~~~~~~~~~a~~l~~~G~d-----~i~v~~----------~----~-----------------------~~~~ 210 (306)
|-...-.+-++.+.+.+.. ++++.. + + ..+.
T Consensus 96 LNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsg 175 (240)
T COG1646 96 LNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSG 175 (240)
T ss_pred ecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCC
Confidence 0001123344444444422 222211 1 0 0233
Q ss_pred CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 211 ~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
+..|...+.++++++.. |+|..|||+|.++++++.++++ .+|..++.+|
T Consensus 176 a~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 176 AGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred CCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 45566778888777776 9999999999999999999754 9999999988
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0058 Score=56.31 Aligned_cols=126 Identities=10% Similarity=0.092 Sum_probs=82.8
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g 179 (306)
.|+.+.|-|.. ++..+.+.++.||+-|.+..|. -.+.++.+...++++..+. .+++|-.-+.. |
T Consensus 75 VPValHLDHg~--~~e~i~~ai~~GftSVM~DgS~-----------l~~eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg 140 (307)
T PRK05835 75 IPVALHLDHGT--TFESCEKAVKAGFTSVMIDASH-----------HAFEENLELTSKVVKMAHN-AGVSVEAELGRLMG 140 (307)
T ss_pred CeEEEECCCCC--CHHHHHHHHHcCCCEEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEecccCC
Confidence 67888876553 2333334445588888885442 2345677777888777654 46666665553 1
Q ss_pred C-------C----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCC--C--CCcHHHHHHHHhhCCCcEEEecCCCCHH
Q psy4398 180 H-------N----EADTIALCKRLEACGIIAIGVHGRTKAERPR--H--RNRIEMIRTLTQHLKIPVIANGGSKEIV 241 (306)
Q Consensus 180 ~-------~----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~--~--p~~~~~v~~i~~~~~ipvia~GGI~s~~ 241 (306)
. . ..+..+..+-+++.|+|.|-+.=.+..+.|. + ..+++.+++|++.+++|++..||-..++
T Consensus 141 ~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~ 217 (307)
T PRK05835 141 IEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPD 217 (307)
T ss_pred ccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCch
Confidence 0 0 1224455555567899999876555555553 2 3689999999999999999999988666
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00087 Score=58.82 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=63.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhcc
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLR 255 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGr 255 (306)
.++++....|...+..|...+-+. ..+.+ .+.++++++++.+ ++|++..|||+|.++++++++++ +.+|+
T Consensus 132 ~~~e~~~ayA~aae~~g~~ivyLe---~SG~~---~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 132 LKPEDAAAYALAAEYLGMPIVYLE---YSGAY---GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeC---CCCCc---CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 567788999999999996665555 12222 4679999999999 99999999999999999999975 59999
Q ss_pred ccCCCCC
Q psy4398 256 NHYPVEK 262 (306)
Q Consensus 256 all~~p~ 262 (306)
+++.||.
T Consensus 206 ai~~~p~ 212 (219)
T cd02812 206 IVEEDPN 212 (219)
T ss_pred hhhCCHH
Confidence 9999873
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0037 Score=54.77 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=86.4
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc----cccCCc--------cccccCChHHHHHHHHHHHhcc
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF----SLTGGM--------GAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~----~~~~~~--------G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
.+++.=|.+.++++....++.+.+ |+..+|+-+..|..- ..+..| |..-.-+++.+.+.+++
T Consensus 13 ~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a----- 87 (213)
T PRK06552 13 NGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA----- 87 (213)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc-----
Confidence 367777788999999999997765 899999988776520 000011 11111122222221111
Q ss_pred cccEEEEeccCCChH----------------HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcE
Q psy4398 169 SIPVSCKIRVFHNEA----------------DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPV 231 (306)
Q Consensus 169 ~~pv~vKir~g~~~~----------------~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipv 231 (306)
+-.+.| +++.+.+ .+..-+..+.++|+|+|-+... .....++++.++..++ +|+
T Consensus 88 GA~Fiv--sP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa-------~~~G~~~ik~l~~~~p~ip~ 158 (213)
T PRK06552 88 GAQFIV--SPSFNRETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKLFPG-------STLGPSFIKAIKGPLPQVNV 158 (213)
T ss_pred CCCEEE--CCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEECCc-------ccCCHHHHHHHhhhCCCCEE
Confidence 111111 1111110 0122233445699999998542 1234588999998884 999
Q ss_pred EEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 232 IANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
++.|||+ .+++.+.++.++ .+|+.++.
T Consensus 159 ~atGGI~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 159 MVTGGVN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred EEECCCC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 9999987 899999999864 88888864
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0068 Score=55.18 Aligned_cols=127 Identities=13% Similarity=0.182 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
.-|.+.+.+..+.+. .|+++|-++.+. |-...-..+.-.++++.+++.+ .+||.+.++. .+..+++
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~Gst----------GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~i 82 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTT----------GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREAI 82 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCC----------cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHHH
Confidence 346677888777665 599999886442 2222223344455566665555 4788888874 4567899
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE------EecCCCCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI------ANGGSKEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi------a~GGI~s~~~~~~~l~ 248 (306)
++++.+++.|+|++.+....-.. .....-.++.++|.+++++||+ .+|---+++...++.+
T Consensus 83 ~~a~~a~~~Gad~v~v~pP~y~~-~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 83 ELARHAEEAGADGVLVVPPYYNK-PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHHHHHHcCCCEEEECCCcCCC-CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 99999999999999986543211 1111235677888888889987 3455557777776664
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0055 Score=53.27 Aligned_cols=145 Identities=15% Similarity=0.171 Sum_probs=84.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCcccc----ccCCc-----cccccCChHHHHHHHHHHHhccccc
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFS----LTGGM-----GAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~----~~~~~-----G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+++.=|.+.++++..+.++.+.+ |+..||+.+..|+... .+..| |..-.-+++.+.+.+++ +-.
T Consensus 8 ~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a-----GA~ 82 (204)
T TIGR01182 8 AKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA-----GAQ 82 (204)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc-----CCC
Confidence 467777889999999999997765 9999999887765200 00111 11111122222222211 111
Q ss_pred EEEEeccCCChHH----------------HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEe
Q psy4398 172 VSCKIRVFHNEAD----------------TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIAN 234 (306)
Q Consensus 172 v~vKir~g~~~~~----------------~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~ 234 (306)
+. ++++.+.+- +..-+..+.++|++.+-+..-. ...+ ..+++.++.-+ ++|++.+
T Consensus 83 Fi--vsP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~---~~GG---~~yikal~~plp~i~~~pt 154 (204)
T TIGR01182 83 FI--VSPGLTPELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAE---VSGG---VKMLKALAGPFPQVRFCPT 154 (204)
T ss_pred EE--ECCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCch---hcCC---HHHHHHHhccCCCCcEEec
Confidence 11 222221100 1112223344677777665421 1111 37889998888 7999999
Q ss_pred cCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 235 GGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
|||+ .+++.+.++.++ .+|+.|+..
T Consensus 155 GGV~-~~N~~~~l~aGa~~vg~Gs~L~~~ 182 (204)
T TIGR01182 155 GGIN-LANVRDYLAAPNVACGGGSWLVPK 182 (204)
T ss_pred CCCC-HHHHHHHHhCCCEEEEEChhhcCc
Confidence 9986 688999998864 888888853
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.049 Score=48.76 Aligned_cols=176 Identities=14% Similarity=0.137 Sum_probs=106.4
Q ss_pred ccccccccCCceEEccCCCCCCHH-HHHH---HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCC--Cceeee
Q psy4398 22 ANQANINYSNKIILAPMVRMNTLP-FRLL---ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD--GSVVFR 95 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~~t~~~-~r~~---~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~ 95 (306)
+++++....++.++|--|-+-... .... +++.|+.++.-...-+.... ..|..+|. .+.+.+
T Consensus 6 ~~~~~~~~~~~~~iaGPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~------------~sf~G~G~~gl~~L~~ 73 (250)
T PRK13397 6 SDFQNKTCSKNNFIVGPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSA------------ASFQGLGLQGIRYLHE 73 (250)
T ss_pred EEecCccCCCCcEEeccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCC------------cccCCCCHHHHHHHHH
Confidence 456777777777777444333333 3332 45678766666544311111 11222221 233455
Q ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 96 TCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 96 ~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
.+.+.|.|++-.++... +.. .+.+.+|.+.| |+..+++.+++. ++.+ .+.||.+|
T Consensus 74 ~~~~~Gl~~~Tev~d~~--~v~----~~~e~vdilqI--------------gs~~~~n~~LL~----~va~-tgkPVilk 128 (250)
T PRK13397 74 VCQEFGLLSVSEIMSER--QLE----EAYDYLDVIQV--------------GARNMQNFEFLK----TLSH-IDKPILFK 128 (250)
T ss_pred HHHHcCCCEEEeeCCHH--HHH----HHHhcCCEEEE--------------CcccccCHHHHH----HHHc-cCCeEEEe
Confidence 56667888887774322 222 22235788888 445566655544 4433 58999999
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEE-Ec-ccCCCCCC-CCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIG-VH-GRTKAERP-RHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~-v~-~~~~~~~~-~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
-....+.+++...++.+.+.|..-|. +| +...-+.+ ....++..+..+++.+++|||..
T Consensus 129 ~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd 190 (250)
T PRK13397 129 RGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVD 190 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEEC
Confidence 99778899999999999999996555 55 43221212 11457888899999899998874
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0069 Score=56.65 Aligned_cols=130 Identities=8% Similarity=0.111 Sum_probs=82.3
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-C
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-F 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g 179 (306)
.|+.+.|-+.. ++..+.+.++.||+-|.+..|. |..|. -..++++.+...++++.... .+++|-.-+.. |
T Consensus 76 VPValHLDHg~--~~e~i~~ai~~GftSVMiDgS~l~~~~~-----~~p~eENI~~Tkevve~Ah~-~Gv~VEaELG~vg 147 (347)
T PRK09196 76 IPVVMHQDHGN--SPATCQRAIQLGFTSVMMDGSLKADGKT-----PASYEYNVDVTRKVVEMAHA-CGVSVEGELGCLG 147 (347)
T ss_pred CcEEEECCCCC--CHHHHHHHHHcCCCEEEecCCCCcccCC-----CCCHHHHHHHHHHHHHHHHH-cCCeEEEEEeecc
Confidence 67888886653 2333444455688888886553 11110 01356677888888877643 47776666543 1
Q ss_pred -CC---------------------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---C----CcHHHHHHHHhhC-CC
Q psy4398 180 -HN---------------------EADTIALCKRLEACGIIAIGVHGRTKAERPRH---R----NRIEMIRTLTQHL-KI 229 (306)
Q Consensus 180 -~~---------------------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---p----~~~~~v~~i~~~~-~i 229 (306)
.. ..+..+..+-+++.|+|.|-+.=.+..+.|.+ | .+++.+++|++++ ++
T Consensus 148 g~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~v 227 (347)
T PRK09196 148 SLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNT 227 (347)
T ss_pred CccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCC
Confidence 10 12345555666678999998654444444432 3 6899999999999 79
Q ss_pred cEEEecCCCC
Q psy4398 230 PVIANGGSKE 239 (306)
Q Consensus 230 pvia~GGI~s 239 (306)
|++..||-..
T Consensus 228 PLVLHGgSG~ 237 (347)
T PRK09196 228 HLVMHGSSSV 237 (347)
T ss_pred CEEEeCCCCC
Confidence 9999999654
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0026 Score=54.12 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCcEEEEcccCCC---CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKA---ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPV 260 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~---~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~ 260 (306)
+-++.+.+.|+|++.+...... .....+..++.++++++..++||++.|||+ .+++.++++.| +++|++++..
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCCEEEEehHhhcC
Confidence 3345667789999998654322 122145678999999988899999999995 68899888864 5999998865
Q ss_pred CC
Q psy4398 261 EK 262 (306)
Q Consensus 261 p~ 262 (306)
+.
T Consensus 185 ~~ 186 (196)
T cd00564 185 DD 186 (196)
T ss_pred CC
Confidence 43
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.01 Score=54.99 Aligned_cols=137 Identities=9% Similarity=0.120 Sum_probs=87.8
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-- 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-- 178 (306)
..|++++|-|.. ++..+.+.++.||+-|.+..|. -.+.++.+...++++..+. .+++|-.-+..
T Consensus 85 ~VPV~lHLDHg~--~~e~i~~ai~~GftSVMiD~S~-----------lp~eeNI~~T~evv~~Ah~-~GvsVEaElG~ig 150 (321)
T PRK07084 85 PIPIVLHLDHGD--SFELCKDCIDSGFSSVMIDGSH-----------LPYEENVALTKKVVEYAHQ-FDVTVEGELGVLA 150 (321)
T ss_pred CCcEEEECCCCC--CHHHHHHHHHcCCCEEEeeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEeeec
Confidence 467777776553 2233334445588888875442 2345677778888877654 46666655543
Q ss_pred CC--C-------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCC-------CCCcHHHHHHHHhhC-CCcEEEecCCCC--
Q psy4398 179 FH--N-------EADTIALCKRLEACGIIAIGVHGRTKAERPR-------HRNRIEMIRTLTQHL-KIPVIANGGSKE-- 239 (306)
Q Consensus 179 g~--~-------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~-------~p~~~~~v~~i~~~~-~ipvia~GGI~s-- 239 (306)
|. + ..+..+..+-+++.|+|.+-+.-.+..+.|. ...+++.+++|++.+ ++|++..||-..
T Consensus 151 g~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~ 230 (321)
T PRK07084 151 GVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQ 230 (321)
T ss_pred CccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcH
Confidence 10 0 1234444555556899999876555444443 236899999999999 799999999733
Q ss_pred --------------------HHHHHHHHHhhh
Q psy4398 240 --------------------IVDYGGVFSLNC 251 (306)
Q Consensus 240 --------------------~~~~~~~l~~~v 251 (306)
.++.+++++.|+
T Consensus 231 ~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI 262 (321)
T PRK07084 231 EYVKTINEYGGKLKDAIGIPEEQLRKAAKSAV 262 (321)
T ss_pred HHHHHHHHhcCccccCCCCCHHHHHHHHHcCC
Confidence 367777777755
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0098 Score=52.06 Aligned_cols=130 Identities=25% Similarity=0.348 Sum_probs=85.7
Q ss_pred HHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCC
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI 197 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~ 197 (306)
-|+++++ |+-+|.--=-.|.... + .-|-+-+.||+.+.||..+ +.+||..|+|+|- .--|+.|+..|+
T Consensus 32 QA~IAE~aGAvAVMaLervPaDiR-~-aGGVaRMaDp~~i~eim~a----VsIPVMAKvRIGH-----~~EA~iLealgV 100 (296)
T COG0214 32 QARIAEEAGAVAVMALERVPADIR-A-AGGVARMADPKMIEEIMDA----VSIPVMAKVRIGH-----FVEAQILEALGV 100 (296)
T ss_pred HHHHHHhcCceeEeehhhCcHHHH-h-ccCccccCCHHHHHHHHHh----cccceeeeeecch-----hHHHHHHHHhCC
Confidence 3456654 8777765444565432 2 2355677899987777655 5799999999764 345788999999
Q ss_pred cEEE----Ecc-------------------------------------cCCCCCCCC-----------------------
Q psy4398 198 IAIG----VHG-------------------------------------RTKAERPRH----------------------- 213 (306)
Q Consensus 198 d~i~----v~~-------------------------------------~~~~~~~~~----------------------- 213 (306)
|+|. ++. |++.+.-.+
T Consensus 101 D~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~ 180 (296)
T COG0214 101 DMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMT 180 (296)
T ss_pred CccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccC
Confidence 9996 111 111100000
Q ss_pred -----------CCcHHHHHHHHhhCCCcE--EEecCCCCHHHHHHHHHh---hhhhccccCC
Q psy4398 214 -----------RNRIEMIRTLTQHLKIPV--IANGGSKEIVDYGGVFSL---NCAFLRNHYP 259 (306)
Q Consensus 214 -----------p~~~~~v~~i~~~~~ipv--ia~GGI~s~~~~~~~l~~---~v~vGrall~ 259 (306)
..-++++.++++.-++|| ++.|||-++.|+.-+... |+-+|+++|.
T Consensus 181 edel~~~Ak~~~~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 181 EDELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 012466777777666776 588999999999877765 5689999886
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0084 Score=56.04 Aligned_cols=142 Identities=8% Similarity=0.070 Sum_probs=89.0
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-- 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-- 178 (306)
.|+.+.|-+.. ++..+.+.++.||.-|.+..|. |. ++-...+.++.+...++++.... .+++|-.-+..
T Consensus 74 VPValHLDHg~--~~e~i~~Ai~~GFtSVMiDgS~l~~-----~~~~~p~eENI~~Tkevve~Ah~-~GvsVEaELG~ig 145 (347)
T TIGR01521 74 IPVVMHQDHGN--SPATCQRAIQLGFTSVMMDGSLRED-----AKTPADYDYNVRVTAEVVAFAHA-VGASVEGELGCLG 145 (347)
T ss_pred CcEEEECCCCC--CHHHHHHHHHcCCCEEeecCcCCcc-----cCCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEeeecc
Confidence 67888886553 2333334455688888886553 11 01112355677778888777654 35555554443
Q ss_pred CC--------C-------------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---C----CcHHHHHHHHhhC-CC
Q psy4398 179 FH--------N-------------EADTIALCKRLEACGIIAIGVHGRTKAERPRH---R----NRIEMIRTLTQHL-KI 229 (306)
Q Consensus 179 g~--------~-------------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---p----~~~~~v~~i~~~~-~i 229 (306)
|. + ..+..+..+-+++.|+|.|-+.=.+..+.|.+ | .+++.+++|++++ ++
T Consensus 146 g~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~v 225 (347)
T TIGR01521 146 SLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDT 225 (347)
T ss_pred cccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCC
Confidence 11 0 11234444555668999998755554444432 3 6899999999999 79
Q ss_pred cEEEecCCCCH----------------------HHHHHHHHhhh
Q psy4398 230 PVIANGGSKEI----------------------VDYGGVFSLNC 251 (306)
Q Consensus 230 pvia~GGI~s~----------------------~~~~~~l~~~v 251 (306)
|++..||-..+ ++.+++++.|+
T Consensus 226 PLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI 269 (347)
T TIGR01521 226 HLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGV 269 (347)
T ss_pred CEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCC
Confidence 99999997755 67777777755
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0081 Score=52.48 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=64.5
Q ss_pred ccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 168 LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 168 ~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
++....+.++.. ..+.+..+++.|+|+|.+....... ....|..++.++.+++...+|+++-|||+ ++++.+
T Consensus 101 ~~~~~iIG~S~h-----~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~-~~nv~~ 174 (211)
T COG0352 101 LGPGLIIGLSTH-----DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGIN-LENVPE 174 (211)
T ss_pred cCCCCEEEeecC-----CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHH
Confidence 333445555532 3566677788999999985533221 11146678999999999999999999986 899999
Q ss_pred HHHhh---hhhccccCCCCCc
Q psy4398 246 VFSLN---CAFLRNHYPVEKL 263 (306)
Q Consensus 246 ~l~~~---v~vGrall~~p~~ 263 (306)
+++.| +++-|+++..+..
T Consensus 175 v~~~Ga~gVAvvsai~~a~d~ 195 (211)
T COG0352 175 VLEAGADGVAVVSAITSAADP 195 (211)
T ss_pred HHHhCCCeEEehhHhhcCCCH
Confidence 99885 4888999875433
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0031 Score=54.70 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=54.4
Q ss_pred HHHHHHcCCcEEEEcccCCCC---CCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 189 CKRLEACGIIAIGVHGRTKAE---RPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~---~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
+....+.|+|+|.++...... .+..+..++.++++++..+ +||++.||| +.+++.++++.| +.+|++++..+
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~ 195 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAE 195 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCC
Confidence 455557899999986543222 2222335899999999886 999999999 589999998875 48999988654
Q ss_pred C
Q psy4398 262 K 262 (306)
Q Consensus 262 ~ 262 (306)
.
T Consensus 196 d 196 (212)
T PRK00043 196 D 196 (212)
T ss_pred C
Confidence 3
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.014 Score=51.05 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=98.4
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
.++..||...+...+.+-.+.+++ |+|-+-+..- +|| .-+=-.+++++++....|++|=+
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPN---------------iTfGp~~v~~l~~~t~~p~DvHL 68 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPN---------------ITFGPPVVKALRKITDLPLDVHL 68 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCC---------------cccCHHHHHHHhhcCCCceEEEE
Confidence 357788889998888888888875 9998777532 454 22334578888888889999887
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCCC
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AERP 211 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~~ 211 (306)
=+ ++...+++.+.++|+|.|++|.-.. ..++
T Consensus 69 MV----~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGf 144 (220)
T COG0036 69 MV----ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGF 144 (220)
T ss_pred ec----CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCC
Confidence 63 3456788889999999999875210 1111
Q ss_pred CC----CCcHHHHHHHHhhCC----CcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 212 RH----RNRIEMIRTLTQHLK----IPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 212 ~~----p~~~~~v~~i~~~~~----ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
.| |..++-++++++..+ +-|-.=|||+ .+++..+.++|+ ..|++++.+++
T Consensus 145 gGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSalF~~~d 205 (220)
T COG0036 145 GGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSALFGADD 205 (220)
T ss_pred cccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEEeCCcc
Confidence 11 223556666666653 2355558876 788888888876 99999998775
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0067 Score=53.51 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=53.2
Q ss_pred HHHHHHcCCcEEEEcccCCC-CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 189 CKRLEACGIIAIGVHGRTKA-ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~-~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
+..+++.|+|+|.+...... .....|..++.++++++.+++||++-||| +.+++.++++.| +++-++++..+
T Consensus 124 a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~~ 199 (221)
T PRK06512 124 AMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDAH 199 (221)
T ss_pred HHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCCC
Confidence 34456799999998654211 12234567888888999999999999999 689999998874 47777777533
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0075 Score=55.27 Aligned_cols=138 Identities=11% Similarity=0.134 Sum_probs=87.5
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|+.++|-|... +..+.+.+..||+-|.+..|. -.+.++.+...++++..++ .+++|-.-+..
T Consensus 72 ~~vPValHLDH~~~--~e~i~~ai~~GftSVM~DgS~-----------l~~eeNi~~T~~vv~~ah~-~gv~VEaElG~i 137 (287)
T PF01116_consen 72 ASVPVALHLDHGKD--FEDIKRAIDAGFTSVMIDGSA-----------LPFEENIAITREVVEYAHA-YGVSVEAELGHI 137 (287)
T ss_dssp STSEEEEEEEEE-S--HHHHHHHHHHTSSEEEEE-TT-----------S-HHHHHHHHHHHHHHHHH-TT-EEEEEESBS
T ss_pred cCCCEEeecccCCC--HHHHHHHHHhCcccccccCCc-----------CCHHHHHHHHHHHHHhhhh-hCCEEEEEeeee
Confidence 35677777754321 222223334488888885442 2345677777888777665 46777776664
Q ss_pred C-----CC--------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--C--CcHHHHHHHHhhC-CCcEEEecCCCCH
Q psy4398 179 F-----HN--------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--R--NRIEMIRTLTQHL-KIPVIANGGSKEI 240 (306)
Q Consensus 179 g-----~~--------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p--~~~~~v~~i~~~~-~ipvia~GGI~s~ 240 (306)
+ .+ ..+..+..+-+++.|+|.|-+.=.+..+.|.+ . .+++.+++|++.+ ++|++..||-..+
T Consensus 138 ~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~ 217 (287)
T PF01116_consen 138 GGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLP 217 (287)
T ss_dssp SSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-
T ss_pred eccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 1 11 12355666666789999999866665555554 2 4789999999999 9999999997765
Q ss_pred H-HHHHHHHhhh
Q psy4398 241 V-DYGGVFSLNC 251 (306)
Q Consensus 241 ~-~~~~~l~~~v 251 (306)
+ +.+++++.|+
T Consensus 218 ~e~~~~ai~~Gi 229 (287)
T PF01116_consen 218 DEQIRKAIKNGI 229 (287)
T ss_dssp HHHHHHHHHTTE
T ss_pred HHHHHHHHHcCc
Confidence 4 7788888765
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.022 Score=49.76 Aligned_cols=143 Identities=14% Similarity=0.175 Sum_probs=94.0
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
+..+|.+.+...+.+-.+++++ |+|.+-+.+-- +.+..+.-+--++++++++.+..|+.|=+=.
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMD-----------G~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv---- 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIED-----------TSFINNITFGMKTIQAVAQQTRHPLSFHLMV---- 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccC-----------CCcCCccccCHHHHHHHHhcCCCCeEEEecc----
Confidence 5568888898888888888875 88876664321 1122222333456788888777887777653
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCCCCC----
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AERPRH---- 213 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~~~~---- 213 (306)
++...+++.+.++|+|.|++|--.. ..++.+
T Consensus 68 ~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~ 147 (210)
T PRK08005 68 SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFI 147 (210)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceec
Confidence 2345677888889999999874310 111111
Q ss_pred CCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 214 RNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 214 p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
|..++-++++++.. ...|-.=|||+ .+++..+.++|+ .+|++++.++.
T Consensus 148 ~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 148 AAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAAAGAQHLVIGRALFTTAN 199 (210)
T ss_pred HHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhhCCCC
Confidence 12345566666554 34677789987 788889888876 89999986543
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.019 Score=49.30 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=83.4
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc-----------cccCCccccccCChHHHHHHHHH------
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF-----------SLTGGMGAALLSTPDIACNILTT------ 163 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~-----------~~~~~~G~~l~~~~~~~~eiv~~------ 163 (306)
.+++.=+.+.++++..+.++.+.+ |+..||+-+-.|... ....+.|.-+ .. +.+...++.
T Consensus 12 ~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl-~~-d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 12 HRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTIL-TL-EDLEEAIAAGAQFCF 89 (187)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEE-cH-HHHHHHHHcCCCEEE
Confidence 356666778888888888886654 899999965543310 0111122211 11 111111110
Q ss_pred ----------HHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEE
Q psy4398 164 ----------LISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVI 232 (306)
Q Consensus 164 ----------v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvi 232 (306)
+++..+.+.. +| ..+..+ +..+.+.|+|++-+... .. +...++++.+++.+ ++|++
T Consensus 90 ~p~~~~~~~~~~~~~~~~~i----~G--~~t~~e-~~~A~~~Gadyv~~Fpt---~~---~~G~~~l~~~~~~~~~ipvv 156 (187)
T PRK07455 90 TPHVDPELIEAAVAQDIPII----PG--ALTPTE-IVTAWQAGASCVKVFPV---QA---VGGADYIKSLQGPLGHIPLI 156 (187)
T ss_pred CCCCCHHHHHHHHHcCCCEE----cC--cCCHHH-HHHHHHCCCCEEEECcC---Cc---ccCHHHHHHHHhhCCCCcEE
Confidence 0111112211 12 112233 34555699999998432 11 23568999999999 69999
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
+.||| +++++.+.++.|+ .++++++.
T Consensus 157 aiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 157 PTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred EeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 99999 4899999999754 88888764
|
|
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.011 Score=55.31 Aligned_cols=143 Identities=10% Similarity=0.094 Sum_probs=90.4
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-C-
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-F- 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g- 179 (306)
.|+++.|-|.. +|..+.+.++.||+-|.+..|.=.. ++-...+.++.+...++++.... .+++|-.-+.. |
T Consensus 76 VPVaLHLDHg~--~~e~i~~Ai~~GFtSVMiDgS~l~~----~~~~~~~eeNI~~Trevve~Ah~-~GvsVEaELG~igg 148 (347)
T PRK13399 76 IPICLHQDHGN--SPATCQSAIRSGFTSVMMDGSLLAD----GKTPASYDYNVDVTRRVTEMAHA-VGVSVEGELGCLGS 148 (347)
T ss_pred CcEEEECCCCC--CHHHHHHHHhcCCCEEEEeCCCCCC----CCCccCHHHHHHHHHHHHHHHHH-cCCeEEEEeeeccC
Confidence 67888886554 2333344445688888886553110 11122466778888888877543 47777666642 1
Q ss_pred ---------CC------------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---C----CcHHHHHHHHhhC-CCc
Q psy4398 180 ---------HN------------EADTIALCKRLEACGIIAIGVHGRTKAERPRH---R----NRIEMIRTLTQHL-KIP 230 (306)
Q Consensus 180 ---------~~------------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---p----~~~~~v~~i~~~~-~ip 230 (306)
.. ..+..+..+-+++.|+|.|-+.=.+..+.|.+ | .+++.+++|++.+ ++|
T Consensus 149 ~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vP 228 (347)
T PRK13399 149 LETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTH 228 (347)
T ss_pred cccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCC
Confidence 00 11244444555568999998654444444432 2 6889999999999 799
Q ss_pred EEEecCCCCH----------------------HHHHHHHHhhh
Q psy4398 231 VIANGGSKEI----------------------VDYGGVFSLNC 251 (306)
Q Consensus 231 via~GGI~s~----------------------~~~~~~l~~~v 251 (306)
++..||-..+ ++.+++++.|+
T Consensus 229 LVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI 271 (347)
T PRK13399 229 LVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGV 271 (347)
T ss_pred EEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCC
Confidence 9999997654 66778777765
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.048 Score=48.91 Aligned_cols=138 Identities=15% Similarity=0.187 Sum_probs=83.2
Q ss_pred CCceEEEecCCC---HHHHHHH----HHH-HhcCCCEEE--EccCCCccccccCCccccccCChHHHHHHHHHHHh--cc
Q psy4398 101 KNKIILQIGTAD---PERALEA----AKK-VEHDVAAID--INMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS--NL 168 (306)
Q Consensus 101 ~~p~ivql~g~~---~~~~~~a----a~~-~~~g~d~ve--ln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~--~~ 168 (306)
+.|+++.+.+++ ++.+-+. .+. +..|+|+|- +|+|+.+ ..+.+.++.+.+.+ ..
T Consensus 77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~--------------e~~~i~~~~~v~~~a~~~ 142 (265)
T COG1830 77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSET--------------EREMIENISQVVEDAHEL 142 (265)
T ss_pred CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcc--------------hHHHHHHHHHHHHHHHHc
Confidence 568888887752 2222111 122 234777754 5666544 24445555444432 34
Q ss_pred cccEEEEecc-CCC--------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC
Q psy4398 169 SIPVSCKIRV-FHN--------EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239 (306)
Q Consensus 169 ~~pv~vKir~-g~~--------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s 239 (306)
+.|+..=+-. |+. .+.+...++...+.|+|.|-.. |.+ +.+..+++.+...+||+..||=..
T Consensus 143 Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~-------ytg--~~e~F~~vv~~~~vpVviaGG~k~ 213 (265)
T COG1830 143 GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK-------YTG--DPESFRRVVAACGVPVVIAGGPKT 213 (265)
T ss_pred CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec-------CCC--ChHHHHHHHHhCCCCEEEeCCCCC
Confidence 8887763332 222 2335566778889999999652 332 447888888888999999999554
Q ss_pred --HHHHH----HHHHh---hhhhccccCCCC
Q psy4398 240 --IVDYG----GVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 240 --~~~~~----~~l~~---~v~vGrall~~p 261 (306)
.+++. ++++. |+.+||-+++.+
T Consensus 214 ~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~ 244 (265)
T COG1830 214 ETEREFLEMVTAAIEAGAMGVAVGRNIFQHE 244 (265)
T ss_pred CChHHHHHHHHHHHHccCcchhhhhhhhccC
Confidence 33333 33333 569999998755
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.007 Score=65.63 Aligned_cols=94 Identities=17% Similarity=0.085 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC--------CCCCcHHH-HHH
Q psy4398 153 TPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP--------RHRNRIEM-IRT 222 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--------~~p~~~~~-v~~ 222 (306)
.++.+.++|..+|+.. +.||.||+-.+... -.++.-+.++|+|.|+|+|....... .+.+ |++ +.+
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v---g~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP-~e~gL~~ 1054 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGV---GTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSP-WELGLAE 1054 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCc---cHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCcc-HHHHHHH
Confidence 4677889999998876 67999999954332 33555667899999999876432221 2221 222 333
Q ss_pred HHhhC-------CCcEEEecCCCCHHHHHHHHHhh
Q psy4398 223 LTQHL-------KIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 223 i~~~~-------~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
+.+.+ ++.+++.||+.+..|+-.++..|
T Consensus 1055 ~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLG 1089 (1485)
T PRK11750 1055 THQALVANGLRHKIRLQVDGGLKTGLDVIKAAILG 1089 (1485)
T ss_pred HHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcC
Confidence 43332 48999999999999988777653
|
|
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.029 Score=50.89 Aligned_cols=101 Identities=12% Similarity=0.143 Sum_probs=69.7
Q ss_pred ccCChHHHHHHHHHHHhcccccEEEEecc-CC---------C---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCC--CC
Q psy4398 150 LLSTPDIACNILTTLISNLSIPVSCKIRV-FH---------N---EADTIALCKRLEACGIIAIGVHGRTKAERPR--HR 214 (306)
Q Consensus 150 l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g~---------~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~--~p 214 (306)
++++.....++++... ..+++|-+-+.. |. + ..+..+..+..+..|+|.|-+.=.+..+.|. .|
T Consensus 111 ~eENi~~tkevv~~ah-~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p 189 (286)
T COG0191 111 FEENIAITKEVVEFAH-AYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNP 189 (286)
T ss_pred HHHHHHHHHHHHHHHH-HcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCC
Confidence 4556667777776654 357777777765 11 1 2235566666777889999864444444443 12
Q ss_pred -CcHHHHHHHHhhCCCcEEEecCCCC-HHHHHHHHHhhh
Q psy4398 215 -NRIEMIRTLTQHLKIPVIANGGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 215 -~~~~~v~~i~~~~~ipvia~GGI~s-~~~~~~~l~~~v 251 (306)
.+++.++++++.+++|++..||-.. .++.++.++.|+
T Consensus 190 ~L~~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI~~GV 228 (286)
T COG0191 190 KLDFDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLGV 228 (286)
T ss_pred CCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHhCc
Confidence 5789999999999999999999764 567888888765
|
|
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.023 Score=54.37 Aligned_cols=144 Identities=11% Similarity=0.082 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+.++.. ++||..+-+.+|- .+++.-.+.++++|+.++ +.+.+-...+|+.+++.++
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~ 224 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAY 224 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence 566665555544 5699999997652 123444677888888874 4566666667999999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCCCchH---
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEKLPK--- 265 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p~~~~--- 265 (306)
++.+++.++..+- ++. .+.+++..+++++.+++||.+-=.+.+..++.++++.+..-+..-+-+|...+
T Consensus 225 ~~~l~~~~~~~iE-------eP~-~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GG 296 (385)
T cd03326 225 AKALAPYGLRWYE-------EPG-DPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYG 296 (385)
T ss_pred HHHhhCcCCCEEE-------CCC-CccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCC
Confidence 9999999887774 222 34578999999999999998877788999999998864321111123343332
Q ss_pred ----HHHHHHHHhcCCC
Q psy4398 266 ----TILYAHCKYKRFE 278 (306)
Q Consensus 266 ----~~l~~~~~~~g~~ 278 (306)
+.+.+..+.+|++
T Consensus 297 it~~~kia~lA~a~gi~ 313 (385)
T cd03326 297 LPEYLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 2566667788876
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0018 Score=57.15 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh-----hhhhcccc
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL-----NCAFLRNH 257 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~-----~v~vGral 257 (306)
.+..++|+.+.+.|+|.+++-+-.... ..+.++++++++.+.+ |+...|||+|.+++++++.. -+.+|++.
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~--~~~~n~~~i~~i~~~~--~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a 111 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIV--GLGDNFSLLSKLSKRV--ELIADCGVRSPEDLETLPFTLEFASRVVVATET 111 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEccccc--CCcchHHHHHHHHhhC--cEEEcCccCCHHHHHHHHhhhccceEEeecChh
Confidence 467899999999999999987665432 3456899999999985 99999999999999998542 23889999
Q ss_pred CCCCCc
Q psy4398 258 YPVEKL 263 (306)
Q Consensus 258 l~~p~~ 263 (306)
+.||.+
T Consensus 112 ~~~p~~ 117 (221)
T TIGR00734 112 LDITEL 117 (221)
T ss_pred hCCHHH
Confidence 999843
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.036 Score=48.90 Aligned_cols=139 Identities=15% Similarity=0.213 Sum_probs=94.4
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEEEec
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSCKIR 177 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir 177 (306)
+..+|...+...+.+-.+++++ |+|.+-+.+- +|| .-+--++++++|+. ++.|+.|=+=
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN---------------~tfg~~~i~~lr~~~~~~~~dvHLM 70 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPN---------------LTIGPMVCQALRKHGITAPIDVHLM 70 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC---------------cccCHHHHHHHHhhCCCCCEEEEec
Confidence 6678889998888888888875 8988766532 344 22334578888887 5888887766
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCCCC
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AERPR 212 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~~~ 212 (306)
. ++...+++.+.++|+|.|++|.-.. ..++.
T Consensus 71 v----~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~ 146 (223)
T PRK08745 71 V----EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFG 146 (223)
T ss_pred c----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCC
Confidence 3 2355677888889999999875310 11111
Q ss_pred C----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 213 H----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 213 ~----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
| +..++-++++++.. ++.|-.-|||+ .+++..+.++|+ .+|++++..+.
T Consensus 147 GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 147 GQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFNAPD 207 (223)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 1 12344555555542 35678889987 889999988875 89999986443
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.012 Score=53.14 Aligned_cols=119 Identities=20% Similarity=0.250 Sum_probs=84.1
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
|+.+++ |+-+|..-=--|..- ++ .-|-.-.+.++. |+++++.+++||+-+++.+. ..-++.|.++|+|
T Consensus 21 a~~ae~aga~~v~~~~~~~~~~-~~-~~~v~R~~~~~~----I~~Ik~~V~iPVIGi~K~~~-----~~Ea~~L~eaGvD 89 (283)
T cd04727 21 ARIAEEAGAVAVMALERVPADI-RA-AGGVARMADPKM----IKEIMDAVSIPVMAKVRIGH-----FVEAQILEALGVD 89 (283)
T ss_pred HHHHHHcCceEEeeeccCchhh-hh-cCCeeecCCHHH----HHHHHHhCCCCeEEeeehhH-----HHHHHHHHHcCCC
Confidence 455654 877776633345542 22 223444566654 56677888999999999432 7778999999999
Q ss_pred EEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccC
Q psy4398 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHY 258 (306)
Q Consensus 199 ~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall 258 (306)
.|..|.+.+ | .-+.+..+++.+++|++ .++.|.+++....+.|+ ++|+.+.
T Consensus 90 iIDaT~r~r------P-~~~~~~~iK~~~~~l~M--AD~stleEal~a~~~Gad~I~TTl~ 141 (283)
T cd04727 90 MIDESEVLT------P-ADEEHHIDKHKFKVPFV--CGARNLGEALRRISEGAAMIRTKGE 141 (283)
T ss_pred EEeccCCCC------c-HHHHHHHHHHHcCCcEE--ccCCCHHHHHHHHHCCCCEEEecCC
Confidence 995443321 2 45688899988887776 58899999999999887 8888874
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.049 Score=51.37 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=105.9
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~ 178 (306)
.|+-..+...++++..+.++.. +.||..+-+.+|.+..+. +. ..+++.-.+.++++|+.++ +.+.|-...
T Consensus 113 i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~--~~-----~~~~~~D~~~i~avr~~~g~~~~l~vDaN~ 185 (352)
T cd03325 113 VRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWI--DT-----SKKVDAAVERVAALREAVGPDIDIGVDFHG 185 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccC--CC-----HHHHHHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 4555555556777776555544 459999999887432110 00 0134555778888888874 445555555
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHY 258 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall 258 (306)
+|+.+++.++++.+++.|+.+|- ++. .+.+++..+++++.+++||.+.=-+.+.+++..+++.+. -..+-
T Consensus 186 ~~~~~~A~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~--~d~v~ 255 (352)
T cd03325 186 RVSKPMAKDLAKELEPYRLLFIE-------EPV-LPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGA--VDIIQ 255 (352)
T ss_pred CCCHHHHHHHHHhccccCCcEEE-------CCC-CccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCC--CCEEe
Confidence 68999999999999999988874 222 234788899999999999887666788889888877532 00111
Q ss_pred CCC-C----chHHHHHHHHHhcCCCCC
Q psy4398 259 PVE-K----LPKTILYAHCKYKRFEVP 280 (306)
Q Consensus 259 ~~p-~----~~~~~l~~~~~~~g~~~~ 280 (306)
-+| . ..-..+.+..+++|+++.
T Consensus 256 ~d~~~~GGit~~~~~~~lA~~~gi~~~ 282 (352)
T cd03325 256 PDISHAGGITELKKIAAMAEAYDVALA 282 (352)
T ss_pred cCccccCCHHHHHHHHHHHHHcCCcEe
Confidence 122 1 112366777888888844
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.017 Score=50.04 Aligned_cols=143 Identities=14% Similarity=0.128 Sum_probs=80.2
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCcccc----ccCCc-----cccccCChHHHHHHHHHHHhccccc
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFS----LTGGM-----GAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~----~~~~~-----G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+++.=|.+.++++..+.++.+.+ |+..||+.+..|..-. .+..| |..-.-+++.+.+.+++ +-.
T Consensus 4 ~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a-----GA~ 78 (201)
T PRK06015 4 QPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA-----GSR 78 (201)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc-----CCC
Confidence 467777889999999999997765 9999999988775210 00001 11111122222222111 111
Q ss_pred EEEEeccCCChH----------------HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEe
Q psy4398 172 VSCKIRVFHNEA----------------DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIAN 234 (306)
Q Consensus 172 v~vKir~g~~~~----------------~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~ 234 (306)
+. ++++.+.+ -+..-+..+.++|++.|-+..-.. ..+ ..+++.++.-+ ++|++.+
T Consensus 79 Fi--vSP~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~---~GG---~~yikal~~plp~~~l~pt 150 (201)
T PRK06015 79 FI--VSPGTTQELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQ---AGG---AAFLKALSSPLAGTFFCPT 150 (201)
T ss_pred EE--ECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchh---hCC---HHHHHHHHhhCCCCcEEec
Confidence 11 11111110 011122233457777777754211 112 37889998888 7999999
Q ss_pred cCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 235 GGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
|||+ .+++.+.++.+. ..|+.+.
T Consensus 151 GGV~-~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 151 GGIS-LKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred CCCC-HHHHHHHHhCCCeEEEEchhhC
Confidence 9986 688889888743 3355555
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.02 Score=53.73 Aligned_cols=146 Identities=8% Similarity=0.045 Sum_probs=87.3
Q ss_pred HHHh-cCCCEEEEccCCCccccccCCcccccc-----CChHHHHHHHHHHHhcccccEEEEe-c-c-C-----------C
Q psy4398 121 KKVE-HDVAAIDINMGCPKQFSLTGGMGAALL-----STPDIACNILTTLISNLSIPVSCKI-R-V-F-----------H 180 (306)
Q Consensus 121 ~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~-----~~~~~~~eiv~~v~~~~~~pv~vKi-r-~-g-----------~ 180 (306)
+.+. .|+|+|-+++-. |..-. .+.+.+.++.++.++ .++|+.+-+ . . + .
T Consensus 113 e~a~~~GAdAVk~lv~~----------~~d~~~~~~~~~~~~l~rv~~ec~~-~giPlllE~l~y~~~~~~~~~~~~a~~ 181 (340)
T PRK12858 113 RRIKEAGADAVKLLLYY----------RPDEDDAINDRKHAFVERVGAECRA-NDIPFFLEPLTYDGKGSDKKAEEFAKV 181 (340)
T ss_pred HHHHHcCCCEEEEEEEe----------CCCcchHHHHHHHHHHHHHHHHHHH-cCCceEEEEeccCCCcccccccccccc
Confidence 4454 599998886442 21100 122344555554433 389988852 2 1 1 1
Q ss_pred ChHHHHHHHHHHHH--cCCcEEEEcccC----CCCC------CCCCCcHHHHHHHHhhCCCcEEE-ecCCCCHHHHHHHH
Q psy4398 181 NEADTIALCKRLEA--CGIIAIGVHGRT----KAER------PRHRNRIEMIRTLTQHLKIPVIA-NGGSKEIVDYGGVF 247 (306)
Q Consensus 181 ~~~~~~~~a~~l~~--~G~d~i~v~~~~----~~~~------~~~p~~~~~v~~i~~~~~ipvia-~GGI~s~~~~~~~l 247 (306)
.++...+.++.+.+ .|+|.+-+.-.. .++. |......+.++++.+..++|+|. +||+ |.+++.+.+
T Consensus 182 ~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l 260 (340)
T PRK12858 182 KPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTL 260 (340)
T ss_pred CHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHH
Confidence 23457788899985 999999873211 1110 11111235677778888899665 7776 556665555
Q ss_pred Hh---------hhhhccccCCCC--Cc---hHHHHHHHHHhcCCC
Q psy4398 248 SL---------NCAFLRNHYPVE--KL---PKTILYAHCKYKRFE 278 (306)
Q Consensus 248 ~~---------~v~vGrall~~p--~~---~~~~l~~~~~~~g~~ 278 (306)
+. |+.+||++++++ .+ ....+++||...|.+
T Consensus 261 ~~A~~aGa~f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~~g~~ 305 (340)
T PRK12858 261 EFACEAGADFSGVLCGRATWQDGIEPYAAEGEEARRAWLNTEGVA 305 (340)
T ss_pred HHHHHcCCCccchhhhHHHHhhhhccccCCCHHHHHHHHHHHhHH
Confidence 42 669999999987 22 234888999888865
|
|
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.057 Score=51.53 Aligned_cols=162 Identities=16% Similarity=0.124 Sum_probs=107.6
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~ 178 (306)
.|+...++..+++++.+.++.+ ++||..+-+..+-+.. ..++ ..+++.-.+.++++|+.++ +.+.+-...
T Consensus 114 i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~-----~~~~--~~~~~~d~~~i~avr~~~g~~~~l~vDaN~ 186 (382)
T PRK14017 114 IRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQ-----YIDS--PRKVDAAVARVAAVREAVGPEIGIGVDFHG 186 (382)
T ss_pred eeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCcc-----cccc--HHHHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 4555555566888876655544 4699999997542110 0000 1234555778899998874 455555555
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHY 258 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall 258 (306)
+|+.+++.++++.+++.|+..|- ++. .+.+++..+++++.+++||.+.=.+.+..+++.+++.+. ...+-
T Consensus 187 ~w~~~~A~~~~~~l~~~~~~~iE-------eP~-~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a--~d~v~ 256 (382)
T PRK14017 187 RVHKPMAKVLAKELEPYRPMFIE-------EPV-LPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGG--VDIIQ 256 (382)
T ss_pred CCCHHHHHHHHHhhcccCCCeEE-------CCC-CcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCC--CCeEe
Confidence 78999999999999999988774 222 245788899999999999988777889999999988642 01111
Q ss_pred CCC-Cc----hHHHHHHHHHhcCCCCC
Q psy4398 259 PVE-KL----PKTILYAHCKYKRFEVP 280 (306)
Q Consensus 259 ~~p-~~----~~~~l~~~~~~~g~~~~ 280 (306)
-++ .. .-+.+.++.+++|++..
T Consensus 257 ~d~~~~GGit~~~~ia~~A~~~gi~~~ 283 (382)
T PRK14017 257 PDLSHAGGITECRKIAAMAEAYDVALA 283 (382)
T ss_pred cCccccCCHHHHHHHHHHHHHcCCeEe
Confidence 122 11 12366777888887743
|
|
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.034 Score=52.83 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~ 188 (306)
..+.+.++++.+. .||+.+-+..+++... .-.+.++++|++++ ..+.+-...+|+.++..++
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~ 207 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGWTLEEAIRL 207 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHH
Confidence 6777888888776 5999999999886531 44567888888875 4555555557898999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
++.+++.+..++- + +..+.+++..+++++.+++||.+.=-+.+..+++++++.+
T Consensus 208 ~~~l~~~~l~~iE-------e-P~~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~ 261 (372)
T COG4948 208 ARALEEYGLEWIE-------E-PLPPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAG 261 (372)
T ss_pred HHHhcccCcceEE-------C-CCCccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcC
Confidence 9999999977663 2 2234578888999998889998888899999999988864
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.055 Score=49.51 Aligned_cols=185 Identities=14% Similarity=0.130 Sum_probs=104.0
Q ss_pred cccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhh-cccccccccCCCCCceeeecCCCCCCceE
Q psy4398 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN-DLLNTIDFVDPLDGSVVFRTCPREKNKII 105 (306)
Q Consensus 27 l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~p~i 105 (306)
+.-++..+++|.+ -|..=..++.+.|+..++|-...... ..+ .++ ++++-.+..+ ...+.....+.|++
T Consensus 8 l~~~~~~l~~p~~--~Da~SAri~e~aGf~Ai~~sg~~~a~-~lG--~pD~g~lt~~e~~~-----~~~~I~~~~~iPvi 77 (285)
T TIGR02317 8 ALAKEDILQIPGA--INAMAALLAERAGFEAIYLSGAAVAA-SLG--LPDLGITTLDEVAE-----DARRITRVTDLPLL 77 (285)
T ss_pred HHhCCCcEEeCCC--CCHHHHHHHHHcCCCEEEEcHHHHHH-hCC--CCCCCCCCHHHHHH-----HHHHHHhccCCCEE
Confidence 3334556677776 23333345668899887775433221 111 111 1111101100 01112223467999
Q ss_pred EEec--CCCHHHHHHHHHHHh-cCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc--
Q psy4398 106 LQIG--TADPERALEAAKKVE-HDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV-- 178 (306)
Q Consensus 106 vql~--g~~~~~~~~aa~~~~-~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~-- 178 (306)
+-+- -.++.+..+..+.+. .|+.+|.|.=.. |. +.+..++.-.-.++...+-|++++++. +.++.+=-|.
T Consensus 78 aD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK---~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa 154 (285)
T TIGR02317 78 VDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPK---RCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDA 154 (285)
T ss_pred EECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcc---ccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCc
Confidence 9873 245888888888776 499999995332 21 111122222224444444455555543 3444444443
Q ss_pred --CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 179 --FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 179 --g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
....+++++=++...++|+|.|-+++. .+.+.++++.+.++.|++.
T Consensus 155 ~~~~g~deAI~Ra~ay~~AGAD~vfi~g~---------~~~e~i~~~~~~i~~Pl~~ 202 (285)
T TIGR02317 155 RAVEGLDAAIERAKAYVEAGADMIFPEAL---------TSLEEFRQFAKAVKVPLLA 202 (285)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhcCCCEEE
Confidence 234677888899999999999998752 3568889999999889843
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.012 Score=55.32 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=54.5
Q ss_pred HHHHHHHcCCcEEEEcccCCC--CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 188 LCKRLEACGIIAIGVHGRTKA--ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~--~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
-+..+.+.|+|+|.+...... .....|..++.++.+++.+++||++-|||+ .+++.++++. +++++++++..
T Consensus 252 e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 252 EMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVLQAGAKRVAVVRAIMGA 328 (347)
T ss_pred HHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCcEEEEeHHHhCC
Confidence 345556789999998654322 111235678999999999999999999996 8899998876 45899998864
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.14 Score=46.83 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=79.5
Q ss_pred CCCCceEEEec-CCCHHHHHHHHHHHh-cCCCEEEEccCC-CccccccCCcccc---ccCChHHHHHHHHHHHhc-c--c
Q psy4398 99 REKNKIILQIG-TADPERALEAAKKVE-HDVAAIDINMGC-PKQFSLTGGMGAA---LLSTPDIACNILTTLISN-L--S 169 (306)
Q Consensus 99 ~~~~p~ivql~-g~~~~~~~~aa~~~~-~g~d~veln~gc-P~~~~~~~~~G~~---l~~~~~~~~eiv~~v~~~-~--~ 169 (306)
....|+++-+- |.++....+..+.+. .|+.+|.|.=.+ |. +...+|+. ..-..+...+.+++++++ . +
T Consensus 76 a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk---~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~ 152 (285)
T TIGR02320 76 VTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLK---KNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTED 152 (285)
T ss_pred hcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCc---cccccCCCCcccccCHHHHHHHHHHHHHhccCCC
Confidence 34678888773 467888888888765 599999993221 11 11112221 223455556666666654 3 4
Q ss_pred ccEEEEecc---CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-----CCcEEEec
Q psy4398 170 IPVSCKIRV---FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-----KIPVIANG 235 (306)
Q Consensus 170 ~pv~vKir~---g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-----~ipvia~G 235 (306)
++|..+.-. +...+++++-++...++|||.|-+.+. +.+.+.+.++.+.+ ++|++.+.
T Consensus 153 ~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~--------~~~~~ei~~~~~~~~~~~p~~pl~~~~ 218 (285)
T TIGR02320 153 FMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSR--------KKDPDEILEFARRFRNHYPRTPLVIVP 218 (285)
T ss_pred eEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCC--------CCCHHHHHHHHHHhhhhCCCCCEEEec
Confidence 566666221 235788999999999999999998731 12446666666666 46888765
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.026 Score=51.53 Aligned_cols=126 Identities=16% Similarity=0.159 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++-+. |-...-..+.-.++++.+.+.+ ..||.+-+.. .+.+++++
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~Gst----------GE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~ 86 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCGTT----------GESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIE 86 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC----------cchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHH
Confidence 45677777777665 599999997332 2222223344455666665555 3678877763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia------~GGI~s~~~~~~~l~ 248 (306)
+++.++++|+|++.+...... ......-+++.++|.+++++||+. .|-.-|++..+++.+
T Consensus 87 ~a~~a~~~G~d~v~~~~P~~~-~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 87 LTKRAEKAGADAALVVTPYYN-KPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE 152 (284)
T ss_pred HHHHHHHcCCCEEEEcccccC-CCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence 999999999999998753211 111112356778888888888773 344556777776664
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.044 Score=51.76 Aligned_cols=142 Identities=8% Similarity=0.098 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+-++.. +.||..+-+.++. +++.-.+.++++|+.++ +.+.+-...+|+.+++.++
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg~----------------~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~ 201 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIGR----------------DPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALAL 201 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecCC----------------CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence 567666655544 4699999996541 23455678888898884 4565655557999999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCCC----
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH--LKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEK---- 262 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~--~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p~---- 262 (306)
++.+++.++..+ +++. .+.+++-.+++++. +++||.+.=.+.+..++.++++.+. .-+-+|.
T Consensus 202 ~~~l~~~~~~~~-------EeP~-~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a----~div~~d~~~~ 269 (352)
T cd03328 202 ARAFADEGVTWF-------EEPV-SSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHA----VDVLQADVTRC 269 (352)
T ss_pred HHHHHHhCcchh-------hCCC-ChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCC----CCEEecCcccc
Confidence 999999887655 2222 34578899999999 8899988777889999999988532 1111221
Q ss_pred ---chHHHHHHHHHhcCCCCCc
Q psy4398 263 ---LPKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 263 ---~~~~~l~~~~~~~g~~~~~ 281 (306)
..-+.+.+..+.+|++...
T Consensus 270 GGit~~~~ia~~A~a~gi~~~~ 291 (352)
T cd03328 270 GGVTGFLQAAALAAAHHVDLSA 291 (352)
T ss_pred CCHHHHHHHHHHHHHcCCeecc
Confidence 1122566667777777444
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.027 Score=50.90 Aligned_cols=158 Identities=19% Similarity=0.282 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeec-CCCCCC-ceEEEec-C---CCH
Q psy4398 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRT-CPREKN-KIILQIG-T---ADP 113 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~-p~ivql~-g---~~~ 113 (306)
+.-|.....++.+.|+..+.|........ .+.+.. ..++-.+.. ...+. ....+. ++++-+- + .++
T Consensus 21 tayD~~sArl~e~aG~d~i~vGds~~~~~-lG~~Dt-~~vtl~em~------~h~~~V~r~~~~p~vvaD~pfg~y~~~~ 92 (264)
T PRK00311 21 TAYDYPFAKLFDEAGVDVILVGDSLGMVV-LGYDST-LPVTLDDMI------YHTKAVARGAPRALVVADMPFGSYQASP 92 (264)
T ss_pred eCCCHHHHHHHHHcCCCEEEECHHHHHHH-cCCCCC-CCcCHHHHH------HHHHHHHhcCCCCcEEEeCCCCCccCCH
Confidence 34677777778899999988752211110 110100 000000000 00011 111233 3666662 2 356
Q ss_pred HHH-HHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE---------------EEe
Q psy4398 114 ERA-LEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS---------------CKI 176 (306)
Q Consensus 114 ~~~-~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~---------------vKi 176 (306)
++. ..+.+.++ .|+++|.|-- | +...+.|+++++. ++||. .|+
T Consensus 93 ~~av~~a~r~~~~aGa~aVkiEd------------g-------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i 152 (264)
T PRK00311 93 EQALRNAGRLMKEAGAHAVKLEG------------G-------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKV 152 (264)
T ss_pred HHHHHHHHHHHHHhCCeEEEEcC------------c-------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeee
Confidence 664 44555666 4999999941 1 2345566666543 78875 222
Q ss_pred ccCCC---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 177 RVFHN---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 177 r~g~~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
.|-+ .+++++-++.++++||+.|.+-+. | . +.+++|.+.+++|+|+-|.
T Consensus 153 -~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v--------~-~-~~~~~i~~~l~iP~igiGa 204 (264)
T PRK00311 153 -QGRDEEAAEKLLEDAKALEEAGAFALVLECV--------P-A-ELAKEITEALSIPTIGIGA 204 (264)
T ss_pred -ecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC--------C-H-HHHHHHHHhCCCCEEEecc
Confidence 1223 235788899999999999998653 2 2 7889999999999998875
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.024 Score=52.58 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++.+. |....-..+.-.++++.+.+.+ .+||.+-+.. .+.+++++
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~Gst----------GE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-~~t~~ai~ 94 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTF----------GECATLTWEEKQAFVATVVETVAGRVPVFVGATT-LNTRDTIA 94 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------ccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-CCHHHHHH
Confidence 45677777777664 599999997442 2222233444455666555545 4788888773 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEE
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIA 233 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia 233 (306)
+++.+++.|+|++.+....-. ......-.++.+.|.+++ ++||+.
T Consensus 95 ~a~~A~~~Gad~vlv~~P~y~-~~~~~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 95 RTRALLDLGADGTMLGRPMWL-PLDVDTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred HHHHHHHhCCCEEEECCCcCC-CCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 999999999999998754210 011112356667777777 577663
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.025 Score=52.20 Aligned_cols=123 Identities=16% Similarity=0.162 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|.|+|=++-+. |-...-..+.-.++++.+++.+ .+||++.+.. .+.+++++
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~Gtt----------GE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~eai~ 90 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTT----------GESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAEAIE 90 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC----------ccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHHHHH
Confidence 45677788777665 599999996442 2222234444466677777666 3678887773 45788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCC---CcHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHR---NRIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p---~~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+.... |..| ...+..+.|.+++++|+|.= |--.+++.+..+.+
T Consensus 91 lak~a~~~Gad~il~v~Py----Y~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 91 LAKHAEKLGADGILVVPPY----YNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred HHHHHHhcCCCEEEEeCCC----CcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 9999999999999986432 2222 23567788888888886643 33345666666554
|
|
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.079 Score=50.19 Aligned_cols=145 Identities=11% Similarity=0.129 Sum_probs=98.9
Q ss_pred ceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccC
Q psy4398 103 KIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVF 179 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g 179 (306)
|+-....+.+++++.+.++.. ++||..+-+.+ .+.++++|+.++ +.+.+-...+
T Consensus 117 ~~ya~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN~~ 173 (361)
T cd03322 117 MVYSHASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVHHR 173 (361)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECCCC
Confidence 444334455677775555544 45999988843 567888998884 4555555556
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCC
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYP 259 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~ 259 (306)
|+.+++.++++.+++.++.++- ++. .+.+++..+++++..++||.+.=.+.+.++++.+++.+. ...+--
T Consensus 174 w~~~~A~~~~~~l~~~~l~~iE-------eP~-~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a--~di~~~ 243 (361)
T cd03322 174 LTPNQAARFGKDVEPYRLFWME-------DPT-PAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERL--IDYIRT 243 (361)
T ss_pred CCHHHHHHHHHHhhhcCCCEEE-------CCC-CcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCC--CCEEec
Confidence 8999999999999999888774 222 245788999999999999888767888999999887632 000111
Q ss_pred CC-C----chHHHHHHHHHhcCCCCC
Q psy4398 260 VE-K----LPKTILYAHCKYKRFEVP 280 (306)
Q Consensus 260 ~p-~----~~~~~l~~~~~~~g~~~~ 280 (306)
++ . ..-+.+.+..+++|++..
T Consensus 244 d~~~~GGit~~~~ia~~A~~~gi~~~ 269 (361)
T cd03322 244 TVSHAGGITPARKIADLASLYGVRTG 269 (361)
T ss_pred CccccCCHHHHHHHHHHHHHcCCeee
Confidence 22 1 112366777888888743
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.12 Score=46.60 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeec-CCCCCCc-eEEEec-C---CCH
Q psy4398 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRT-CPREKNK-IILQIG-T---ADP 113 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~p-~ivql~-g---~~~ 113 (306)
+.-|.....++.+.|+..+.|........ .+.+.. +.++-.+.. ...+. ....+.| +++-+. + +++
T Consensus 18 ~ayD~~sA~l~e~aG~d~i~vGds~~~~~-lG~pDt-~~vtl~em~------~~~~~V~r~~~~p~viaD~~fg~y~~~~ 89 (254)
T cd06557 18 TAYDYPTAKLADEAGVDVILVGDSLGMVV-LGYDST-LPVTLDEMI------YHTRAVRRGAPRALVVADMPFGSYQTSP 89 (254)
T ss_pred eCCCHHHHHHHHHcCCCEEEECHHHHHHH-cCCCCC-CCcCHHHHH------HHHHHHHhcCCCCeEEEeCCCCcccCCH
Confidence 34577777778889999888763211110 111100 000000000 00111 1123456 555553 2 357
Q ss_pred HHHHHHHH-HHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-------------
Q psy4398 114 ERALEAAK-KVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------------- 178 (306)
Q Consensus 114 ~~~~~aa~-~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------------- 178 (306)
++..+.+. .++ .|+++|.|-- | ....+.|++++++ ++||..=+.+
T Consensus 90 ~~av~~a~r~~~~aGa~aVkiEd------------~-------~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~ 149 (254)
T cd06557 90 EQALRNAARLMKEAGADAVKLEG------------G-------AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKV 149 (254)
T ss_pred HHHHHHHHHHHHHhCCeEEEEcC------------c-------HHHHHHHHHHHHc-CCCeeccccccceeeeccCCcee
Confidence 77666554 556 5999999941 1 2445556666543 6776622221
Q ss_pred -CCC---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 179 -FHN---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 179 -g~~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
|-+ .+++++-++.++++|||.|.+-+. | . +.+++|.+.+++|+|+-|.
T Consensus 150 ~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v--------~-~-~~~~~i~~~v~iP~igiGa 201 (254)
T cd06557 150 QGKTEEEAERLLEDALALEEAGAFALVLECV--------P-A-ELAKEITEALSIPTIGIGA 201 (254)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC--------C-H-HHHHHHHHhCCCCEEEecc
Confidence 112 245788899999999999998653 2 2 6889999999999998875
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.026 Score=51.76 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++-+. |-...-..+.-.++++.+.+.+ .+||.+-+. .+..++++
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~Gst----------GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~--~~t~~~i~ 85 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGT----------GEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG--YGTATAIA 85 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCC----------cCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC--CCHHHHHH
Confidence 35567777777654 599999996442 1111122233344444444443 478998886 47889999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe--cC-CCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN--GG-SKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~--GG-I~s~~~~~~~l~ 248 (306)
+++.++++|+|++.+....-. ......-.++.+.|.+++++||+.= -| --+++...++.+
T Consensus 86 ~a~~a~~~Gad~v~~~pP~y~-~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 86 YAQAAEKAGADGILLLPPYLT-EAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred HHHHHHHhCCCEEEECCCCCC-CCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 999999999999998543211 0111112566788888888886653 22 234555555544
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.027 Score=52.06 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++.+. |-...-..+.-.++++.+.+.+ .+||.+-+. .+..++++
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~Gst----------GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~~i~ 92 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGT----------GEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQAIE 92 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCC----------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHHHHH
Confidence 35567777777664 599999997442 2222223333345555554444 478888886 47889999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe--cCC-CCHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN--GGS-KEIVDYGGVF 247 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~--GGI-~s~~~~~~~l 247 (306)
+++.+++.|+|++.+....-. ......-.++.+.+.+++++||+.= .|+ -+++...++.
T Consensus 93 ~~~~a~~~Gadav~~~pP~y~-~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 93 YAQAAERAGADGILLLPPYLT-EAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred HHHHHHHhCCCEEEECCCCCC-CCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999998653211 1111113466778888888886542 222 2555555554
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.029 Score=51.59 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+|+|=++-+. |-...-..+.-.++++.+.+.+ ..||.+-+. .+.+++++
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~Gst----------GE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ai~ 90 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGT----------GEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSDAIE 90 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECCCC----------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHHHHH
Confidence 45677887777664 599999996442 2122223333344555554444 478888886 46889999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe--cC-CCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN--GG-SKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~--GG-I~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+....-. ..+...-.++.++|.+++++||+.= -| --+++...++.+
T Consensus 91 ~a~~a~~~Gadav~~~pP~y~-~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 91 IARLAEKAGADGYLLLPPYLI-NGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHHHHhCCCEEEECCCCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 999999999999988653211 1111123567788888888896543 23 235666666654
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.018 Score=50.46 Aligned_cols=142 Identities=13% Similarity=0.189 Sum_probs=81.7
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc-----cc----cCCccccccCChHHH--------------
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF-----SL----TGGMGAALLSTPDIA-------------- 157 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~-----~~----~~~~G~~l~~~~~~~-------------- 157 (306)
.+++.=+.+.++++..+.++.+.+ |++.||+-+..|... .+ +-.-|..---+++.+
T Consensus 15 ~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 15 GPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 467777889999999999998876 899999987766421 00 000111111111111
Q ss_pred ---HHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEE
Q psy4398 158 ---CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIA 233 (306)
Q Consensus 158 ---~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia 233 (306)
.++++..++ .++|+.-.+ .+ .-| +..+.++|++.+-+.+-.. . + ...+++.++.-+ ++|++.
T Consensus 95 ~~~~~vi~~a~~-~~i~~iPG~---~T---ptE-i~~a~~~Ga~~vKlFPa~~---~-g--g~~~lk~l~~p~p~~~~~p 160 (212)
T PRK05718 95 GLTPPLLKAAQE-GPIPLIPGV---ST---PSE-LMLGMELGLRTFKFFPAEA---S-G--GVKMLKALAGPFPDVRFCP 160 (212)
T ss_pred CCCHHHHHHHHH-cCCCEeCCC---CC---HHH-HHHHHHCCCCEEEEccchh---c-c--CHHHHHHHhccCCCCeEEE
Confidence 122222111 111111110 11 223 5556678888888754211 1 1 347888888888 799999
Q ss_pred ecCCCCHHHHHHHHHhh-h-hhccccC
Q psy4398 234 NGGSKEIVDYGGVFSLN-C-AFLRNHY 258 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~-v-~vGrall 258 (306)
+|||+ .+++.+.++.+ + .+|...+
T Consensus 161 tGGV~-~~ni~~~l~ag~v~~vggs~L 186 (212)
T PRK05718 161 TGGIS-PANYRDYLALPNVLCIGGSWM 186 (212)
T ss_pred eCCCC-HHHHHHHHhCCCEEEEEChHh
Confidence 99986 68899999875 2 4444444
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.099 Score=48.02 Aligned_cols=189 Identities=14% Similarity=0.059 Sum_probs=105.4
Q ss_pred cccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCce
Q psy4398 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKI 104 (306)
Q Consensus 25 ~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ 104 (306)
..+.-++..+++|.+ -|..=..++.+.|+..++|-.........+.+ ..++++-.+... ...+.....+.|+
T Consensus 10 r~ll~~~~~l~~p~~--~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~P-D~g~l~~~e~~~-----~~~~I~~~~~iPv 81 (292)
T PRK11320 10 RAALAAEKPLQIVGT--INAYHALLAERAGFKAIYLSGGGVAAASLGLP-DLGITTLDDVLI-----DVRRITDACDLPL 81 (292)
T ss_pred HHHHcCCCcEEecCC--CCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCC-CCCCCCHHHHHH-----HHHHHHhccCCCE
Confidence 444345556677766 34443445668899777665432211111111 001211111110 0111122345799
Q ss_pred EEEecC--CCHHHHHHHHHHHhc-CCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc-
Q psy4398 105 ILQIGT--ADPERALEAAKKVEH-DVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV- 178 (306)
Q Consensus 105 ivql~g--~~~~~~~~aa~~~~~-g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~- 178 (306)
++-+-. .++....+..+.+.+ |+.+|.|-=.. |. +.+..++.-.-.++...+=|++++++. +.++.+=-|.
T Consensus 82 iaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK---~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTD 158 (292)
T PRK11320 82 LVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAK---RCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTD 158 (292)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcc---ccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecC
Confidence 998732 388888888887764 99999994322 22 111122222234444444455555543 4445544442
Q ss_pred ---CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 179 ---FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 179 ---g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
....++.++=++...++|+|.|-+++. .+.+.++++.+.++.|+++
T Consensus 159 a~~~~g~deAI~Ra~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~~~Pl~~ 207 (292)
T PRK11320 159 ALAVEGLDAAIERAQAYVEAGADMIFPEAM---------TELEMYRRFADAVKVPILA 207 (292)
T ss_pred cccccCHHHHHHHHHHHHHcCCCEEEecCC---------CCHHHHHHHHHhcCCCEEE
Confidence 234677888899999999999998763 3578899999999989844
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.26 Score=45.47 Aligned_cols=101 Identities=15% Similarity=0.029 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcccccEEEEecc-C------CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-C
Q psy4398 157 ACNILTTLISNLSIPVSCKIRV-F------HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-K 228 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~-g------~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ 228 (306)
+.+++++. +..++|+.+=+-. | .+++.....++...+.|+|.|-+.-.+..+ ..+.+.++++.+.. .
T Consensus 156 l~~v~~ea-~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~----~g~~e~f~~vv~~~g~ 230 (304)
T PRK06852 156 AAQIIYEA-HKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEG----ANPAELFKEAVLAAGR 230 (304)
T ss_pred HHHHHHHH-HHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCC----CCCHHHHHHHHHhCCC
Confidence 34444433 2358998762221 2 233457788899999999999874321111 02447778888888 8
Q ss_pred CcEEEecCCC-CHHH----HHHHHH-h---hhhhccccCCCCC
Q psy4398 229 IPVIANGGSK-EIVD----YGGVFS-L---NCAFLRNHYPVEK 262 (306)
Q Consensus 229 ipvia~GGI~-s~~~----~~~~l~-~---~v~vGrall~~p~ 262 (306)
+||+..||=. +.++ .+++++ . |+.+||-+++.|.
T Consensus 231 vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 231 TKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL 273 (304)
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC
Confidence 9999999955 3222 344444 3 5699999998763
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.077 Score=46.32 Aligned_cols=142 Identities=22% Similarity=0.247 Sum_probs=83.3
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
++.+-+--.+.++..+.++.+....+.|+++..+=. .+| .++++.+|+...+++++|+-.-.
T Consensus 5 ~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l~~------~~G----------~~~v~~ir~~~~i~~D~k~~di~-- 66 (215)
T PRK13813 5 RIILALDVTDRERALKIAEELDDYVDAIKVGWPLVL------ASG----------LGIIEELKRYAPVIADLKVADIP-- 66 (215)
T ss_pred CEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHHHH------hhC----------HHHHHHHHhcCCEEEEeeccccH--
Confidence 566666566666666555555445688888744300 122 35677778766788889987211
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC-------------CC--------------------------------CC----CC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK-------------AE--------------------------------RP----RH 213 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~-------------~~--------------------------------~~----~~ 213 (306)
......++.+.++|+|++++|.... .+ +. ..
T Consensus 67 ~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~ 146 (215)
T PRK13813 67 NTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAP 146 (215)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEC
Confidence 2233445777789999999875320 00 00 00
Q ss_pred CCcHHHHHHHHhhCCCc-EEEecCCCCH-HHHHHHHHhh---hhhccccCCCCC
Q psy4398 214 RNRIEMIRTLTQHLKIP-VIANGGSKEI-VDYGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 214 p~~~~~v~~i~~~~~ip-via~GGI~s~-~~~~~~l~~~---v~vGrall~~p~ 262 (306)
+..++-++++++..+-+ .+..|||+.. .++.++++.| +.+||+++..+.
T Consensus 147 ~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d 200 (215)
T PRK13813 147 ATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIKAGADYVIVGRSIYNAAD 200 (215)
T ss_pred CCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCCCC
Confidence 11234445666665433 3477998853 1356666654 499999997654
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.027 Score=50.88 Aligned_cols=138 Identities=15% Similarity=0.159 Sum_probs=79.4
Q ss_pred CCceEEEecCCC-----H--HH-HHHHHHHHhcCCCEEEEc--cCCCccccccCCccccccCChHHHHHHHHHHHhcccc
Q psy4398 101 KNKIILQIGTAD-----P--ER-ALEAAKKVEHDVAAIDIN--MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI 170 (306)
Q Consensus 101 ~~p~ivql~g~~-----~--~~-~~~aa~~~~~g~d~veln--~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~ 170 (306)
+.|+++.|.+++ + +. +...-+.++.|+|+|-++ +|++.. .+..+.+.++++.. +..++
T Consensus 74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E-----------~~~l~~l~~v~~ea-~~~G~ 141 (264)
T PRK08227 74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYE-----------HQSIKNIIQLVDAG-LRYGM 141 (264)
T ss_pred CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHH-----------HHHHHHHHHHHHHH-HHhCC
Confidence 346777776532 1 11 121222334588987664 443221 01122333444333 34589
Q ss_pred cEEEEeccCCC----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC-HHHH--
Q psy4398 171 PVSCKIRVFHN----EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE-IVDY-- 243 (306)
Q Consensus 171 pv~vKir~g~~----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~-- 243 (306)
|+.+=...|.+ .+-....++...+.|+|.|-+. |.+ +.++++.+...+||+..||=.. .+++
T Consensus 142 Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~-------y~~----~~f~~vv~a~~vPVviaGG~k~~~~~~L~ 210 (264)
T PRK08227 142 PVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY-------YVE----EGFERITAGCPVPIVIAGGKKLPERDALE 210 (264)
T ss_pred cEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC-------CCH----HHHHHHHHcCCCcEEEeCCCCCCHHHHHH
Confidence 98883322432 2235667788899999999753 322 5678888888999999999653 2222
Q ss_pred --HHHHHh---hhhhccccCCCC
Q psy4398 244 --GGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 244 --~~~l~~---~v~vGrall~~p 261 (306)
+++++. |+.+||-+++.+
T Consensus 211 ~v~~ai~aGa~Gv~~GRNIfQ~~ 233 (264)
T PRK08227 211 MCYQAIDEGASGVDMGRNIFQSE 233 (264)
T ss_pred HHHHHHHcCCceeeechhhhccC
Confidence 223332 569999998865
|
|
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.14 Score=48.04 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=105.0
Q ss_pred CceEEEec-CCCHHHHHHHHHHH-hcCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEe
Q psy4398 102 NKIILQIG-TADPERALEAAKKV-EHDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKI 176 (306)
Q Consensus 102 ~p~ivql~-g~~~~~~~~aa~~~-~~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKi 176 (306)
.|+..... ..+++++.+.++.+ ++||..+-+.++. |. + + ..+++.-.+.++++|+.++ +.+.+-.
T Consensus 109 i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~-----~--~---~~~~~~d~~~v~avr~~~g~~~~l~vDa 178 (341)
T cd03327 109 IPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPS-----D--G---HAGLRKNVELVRAIREAVGYDVDLMLDC 178 (341)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCC-----c--c---hHHHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 44444432 35777776666544 4699999998653 11 0 0 0134556778888888874 4455555
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccc
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRN 256 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGra 256 (306)
..+|+.+++.++++.+++.++.++- ++. .+.+++..+++++.+++||.+.=.+.+..+++++++... ...
T Consensus 179 n~~~~~~~A~~~~~~l~~~~~~~iE-------eP~-~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a--~d~ 248 (341)
T cd03327 179 YMSWNLNYAIKMARALEKYELRWIE-------EPL-IPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRA--VDI 248 (341)
T ss_pred CCCCCHHHHHHHHHHhhhcCCcccc-------CCC-CccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCC--CCE
Confidence 5568999999999999998876652 222 245788899999999999887666788999999887532 001
Q ss_pred cCCCC-C----chHHHHHHHHHhcCCCCCc
Q psy4398 257 HYPVE-K----LPKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 257 ll~~p-~----~~~~~l~~~~~~~g~~~~~ 281 (306)
+--++ . ..-+.+.++.+++|++...
T Consensus 249 i~~d~~~~GGit~~~~i~~~A~~~g~~~~~ 278 (341)
T cd03327 249 LQPDVNWVGGITELKKIAALAEAYGVPVVP 278 (341)
T ss_pred EecCccccCCHHHHHHHHHHHHHcCCeecc
Confidence 11122 1 1223677778888887443
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.12 Score=49.78 Aligned_cols=165 Identities=13% Similarity=0.149 Sum_probs=102.5
Q ss_pred ecCCCHHHHHHHHHHH-hcCCCEEEEccCCCcc---ccccCC----cccc----------c--cCChHHHHHHHHHHHhc
Q psy4398 108 IGTADPERALEAAKKV-EHDVAAIDINMGCPKQ---FSLTGG----MGAA----------L--LSTPDIACNILTTLISN 167 (306)
Q Consensus 108 l~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~---~~~~~~----~G~~----------l--~~~~~~~~eiv~~v~~~ 167 (306)
..+.+++++.+-++.+ +.||..+-+.+|.|.. ...... ++.. + .+..+...+.++++|+.
T Consensus 123 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~ 202 (404)
T PRK15072 123 ANGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK 202 (404)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh
Confidence 3455677765555444 5699999998875321 000000 0000 0 01124456889999998
Q ss_pred cc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 168 LS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 168 ~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
++ +.+.+-...+|+.+++.++++.+++.++..|- ++. .+.+++-.+++++.+++||.+.=.+.+..+++.
T Consensus 203 ~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------eP~-~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~ 274 (404)
T PRK15072 203 FGFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLE-------DPT-PAENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQ 274 (404)
T ss_pred hCCCceEEEECCCCCCHHHHHHHHHhccccCCcEEE-------CCC-CccCHHHHHHHHhcCCCCEEeCcCccCHHHHHH
Confidence 84 44555555579999999999999998887774 222 245788889999999999988777888999999
Q ss_pred HHHhhh-hhcc--ccCCCCCchHHHHHHHHHhcCCCCC
Q psy4398 246 VFSLNC-AFLR--NHYPVEKLPKTILYAHCKYKRFEVP 280 (306)
Q Consensus 246 ~l~~~v-~vGr--all~~p~~~~~~l~~~~~~~g~~~~ 280 (306)
+++.+. .+=. ....+-...-+.+.++.+.+|++..
T Consensus 275 li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~ 312 (404)
T PRK15072 275 LIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTG 312 (404)
T ss_pred HHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCcee
Confidence 888632 1000 0000111122356677778887743
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.1 Score=45.93 Aligned_cols=139 Identities=10% Similarity=0.057 Sum_probs=84.7
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc-EEEEeccC
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP-VSCKIRVF 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir~g 179 (306)
.+++.=+.+.++++..+.++.+.+ |...||+-+..|+. .+.+.++.+.+++. .| +.+....-
T Consensus 15 ~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a--------------~~~i~~l~~~~~~~--~p~~~vGaGTV 78 (222)
T PRK07114 15 TGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFA--------------HEVFAELVKYAAKE--LPGMILGVGSI 78 (222)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcH--------------HHHHHHHHHHHHhh--CCCeEEeeEeC
Confidence 467777788999999999997765 99999998877662 12233333333332 22 22222211
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccC--------------------C--------CC------CCCCCCcHHHHHHHHh
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRT--------------------K--------AE------RPRHRNRIEMIRTLTQ 225 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~--------------------~--------~~------~~~~p~~~~~v~~i~~ 225 (306)
.+ .+-++.+.++|++++.--+.. . .+ .+.......+++.++.
T Consensus 79 l~----~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~ 154 (222)
T PRK07114 79 VD----AATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKG 154 (222)
T ss_pred cC----HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhc
Confidence 12 333455566677666521100 0 00 0011123578889988
Q ss_pred hC-CCcEEEecCCCC-HHHHHHHHHhhh---hhccccCCC
Q psy4398 226 HL-KIPVIANGGSKE-IVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 226 ~~-~ipvia~GGI~s-~~~~~~~l~~~v---~vGrall~~ 260 (306)
-+ ++|++.+|||+- .+++.+.++.++ .+|+.|+..
T Consensus 155 p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~ 194 (222)
T PRK07114 155 PMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPK 194 (222)
T ss_pred cCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCc
Confidence 88 799999999983 578888888765 678888743
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.013 Score=50.53 Aligned_cols=140 Identities=19% Similarity=0.249 Sum_probs=76.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCcccc---------cc--CCccccccCChHHHHH----------
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFS---------LT--GGMGAALLSTPDIACN---------- 159 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~---------~~--~~~G~~l~~~~~~~~e---------- 159 (306)
.+++.=|.+.++++..+.++.+.+ |+..+|+.+..|+... .. -|.|+- -+.+.+.+
T Consensus 8 ~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV--~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 8 NKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTV--LTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp HSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES----SHHHHHHHHHHT-SEEE
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEec--cCHHHHHHHHHcCCCEEE
Confidence 367777888999999999997765 9999999887765200 00 011110 12222111
Q ss_pred -------HHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCc-HHHHHHHHhhC-CCc
Q psy4398 160 -------ILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNR-IEMIRTLTQHL-KIP 230 (306)
Q Consensus 160 -------iv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~-~~~v~~i~~~~-~ip 230 (306)
+++..++. ++|+.-.+- + .-|+ ..+.++|++.+-+..-.. .. ..+++.++.-+ +++
T Consensus 86 SP~~~~~v~~~~~~~-~i~~iPG~~---T---ptEi-~~A~~~G~~~vK~FPA~~-------~GG~~~ik~l~~p~p~~~ 150 (196)
T PF01081_consen 86 SPGFDPEVIEYAREY-GIPYIPGVM---T---PTEI-MQALEAGADIVKLFPAGA-------LGGPSYIKALRGPFPDLP 150 (196)
T ss_dssp ESS--HHHHHHHHHH-TSEEEEEES---S---HHHH-HHHHHTT-SEEEETTTTT-------TTHHHHHHHHHTTTTT-E
T ss_pred CCCCCHHHHHHHHHc-CCcccCCcC---C---HHHH-HHHHHCCCCEEEEecchh-------cCcHHHHHHHhccCCCCe
Confidence 11111110 111111111 1 1122 223457777777653221 12 58999999888 799
Q ss_pred EEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 231 VIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 231 via~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
++.+|||+ .+++.+.++.+. .+|+.|+.
T Consensus 151 ~~ptGGV~-~~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 151 FMPTGGVN-PDNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp EEEBSS---TTTHHHHHTSTTBSEEEESGGGS
T ss_pred EEEcCCCC-HHHHHHHHhCCCEEEEECchhcC
Confidence 99999987 578888888754 88888775
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.074 Score=48.71 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
-|.+.+.+..+.+ +. |+++|=++-+. |-...-..+.-.++++.+.+.+ .+||++-+.. .+.++++
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~Gst----------GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ai 86 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNGST----------GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKESQ 86 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECcCC----------cCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHHHH
Confidence 4667777777755 57 99999996432 1111122333344455444443 4688887763 4678899
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEE------ecCCCCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia------~GGI~s~~~~~~~l~ 248 (306)
++++.++++|+|++.+....... +....-.++.++|.+++ ++||+. .|---+++...++.+
T Consensus 87 ~~a~~a~~~Gad~v~~~~P~y~~-~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 87 ELAKHAEELGYDAISAITPFYYK-FSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCC-CCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 99999999999999976532111 11112356778888889 899874 343446666666654
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.053 Score=49.58 Aligned_cols=126 Identities=14% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|+++|=++-+. |-...-..+.-.++++.+.+.+ ..||.+-+.. .+.+++++
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~Gst----------GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~~i~ 84 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVGTT----------GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEEAIS 84 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccC----------cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHHHHH
Confidence 3566777777765 4599999986332 1111122233344444444433 3688877763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia------~GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+....-. .+....-+++.++|.+++++||+. +|---+++..+++.+
T Consensus 85 ~a~~a~~~Gad~v~v~pP~y~-~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 85 LTKFAEDVGADGFLVVTPYYN-KPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred HHHHHHHcCCCEEEEcCCcCC-CCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 999999999999998754311 111111346677888888888773 343345666665554
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.078 Score=51.21 Aligned_cols=144 Identities=10% Similarity=0.022 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~ 186 (306)
+.+++++.+.++.. ++||..+-+.+| .+++.-.+.++++|+.++ +.+.+-...+|+.+++.
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~ 257 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAI 257 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 45677776666644 469999999654 134445677889998884 44555555568999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-C
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL---KIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-K 262 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~---~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~ 262 (306)
++++.+++.++.++- ++. .+.+++..+++++.+ ++||.+.=.+.+..+++++++.+. -..+--|+ .
T Consensus 258 ~~~~~L~~~~l~~iE-------EP~-~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a--~dil~~d~~~ 327 (415)
T cd03324 258 EWVKQLAEFKPWWIE-------EPT-SPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGA--IDVVQIDSCR 327 (415)
T ss_pred HHHHHhhccCCCEEE-------CCC-CCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCC--CCEEEeCccc
Confidence 999999999988763 222 245788889999988 699877667889999999887532 00001122 1
Q ss_pred ----chHHHHHHHHHhcCCCC
Q psy4398 263 ----LPKTILYAHCKYKRFEV 279 (306)
Q Consensus 263 ----~~~~~l~~~~~~~g~~~ 279 (306)
..-+.+.+..+.+|++.
T Consensus 328 ~GGit~~~kia~lA~a~gi~~ 348 (415)
T cd03324 328 LGGVNENLAVLLMAAKFGVPV 348 (415)
T ss_pred cCCHHHHHHHHHHHHHcCCeE
Confidence 12236667778888874
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.069 Score=48.98 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|.++|=++.+. |-...-..+.-.++++.+.+.+ ..||.+-+.. .+.+++++
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~----------GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~ 87 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTT----------GESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIE 87 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcC----------CccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHH
Confidence 45677777777665 599999997442 1111222333344445444444 3688877763 36788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia------~GGI~s~~~~~~~l~ 248 (306)
+++.++++|+|++.+....-. ......-.++.++|.+++++||+. .|---+++.+.++.+
T Consensus 88 ~a~~a~~~G~d~v~~~pP~~~-~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~ 153 (292)
T PRK03170 88 LTKFAEKAGADGALVVTPYYN-KPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAE 153 (292)
T ss_pred HHHHHHHcCCCEEEECCCcCC-CCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHc
Confidence 999999999999998653211 111112356778888888888773 344446666666643
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.063 Score=48.41 Aligned_cols=95 Identities=23% Similarity=0.322 Sum_probs=64.5
Q ss_pred CHHHHHHHHH-HHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE---------EEecc--
Q psy4398 112 DPERALEAAK-KVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS---------CKIRV-- 178 (306)
Q Consensus 112 ~~~~~~~aa~-~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~---------vKir~-- 178 (306)
++++..+.+. .++ .|+++|.|-- + ....+.++++.+ .++||. ++.-.
T Consensus 90 ~~e~a~~na~rl~~eaGa~aVkiEg-------------g------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy 149 (263)
T TIGR00222 90 TPEQALKNAARVMQETGANAVKLEG-------------G------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGY 149 (263)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcC-------------c------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCe
Confidence 4666555444 556 4999999941 1 223455555544 477877 33211
Q ss_pred ---CCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 179 ---FHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 179 ---g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
|.+. +++++-|+.++++||+.|.+-+. | -+.+++|.+.+++|+|+.|.
T Consensus 150 ~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~v--------p--~~~a~~It~~l~iP~iGIGa 203 (263)
T TIGR00222 150 KVQGKDEEAAKKLLEDALALEEAGAQLLVLECV--------P--VELAAKITEALAIPVIGIGA 203 (263)
T ss_pred eecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCC--------c--HHHHHHHHHhCCCCEEeecc
Confidence 2232 35788899999999999998654 2 37899999999999998875
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.045 Score=51.25 Aligned_cols=94 Identities=12% Similarity=0.210 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccC--CCCCCCC--C--CcHHHHHHHHhhC
Q psy4398 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT--KAERPRH--R--NRIEMIRTLTQHL 227 (306)
Q Consensus 154 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~--~~~~~~~--p--~~~~~v~~i~~~~ 227 (306)
.+...+.++.+++..+.|+++.++. .+.++..++++.++++|+|+|.++-.- ......+ + ..++.++++++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Confidence 4566677777777778999999974 466788999999999999999985321 1111111 1 1357789999999
Q ss_pred CCcEEEe--cCCCCHHHHHHHHH
Q psy4398 228 KIPVIAN--GGSKEIVDYGGVFS 248 (306)
Q Consensus 228 ~ipvia~--GGI~s~~~~~~~l~ 248 (306)
++||++- +++.++.+..+.++
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~ 187 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLD 187 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHH
Confidence 9999987 44444445444443
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.2 Score=46.08 Aligned_cols=139 Identities=12% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCCCceEEEec---CCCHHHHHHHHHHHh-cCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcc-cccE
Q psy4398 99 REKNKIILQIG---TADPERALEAAKKVE-HDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPV 172 (306)
Q Consensus 99 ~~~~p~ivql~---g~~~~~~~~aa~~~~-~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv 172 (306)
..+.|+++-+- |+.++ ..+..+.+. .|+.+|.|.=.. |. +.+..++.-.-..+...+-|++++++. +.++
T Consensus 75 ~~~lPv~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~pK---~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~ 150 (294)
T TIGR02319 75 AVDVPVIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVNPK---RCGHLEGKRLISTEEMTGKIEAAVEAREDEDF 150 (294)
T ss_pred ccCCCEEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCCcc---ccCCCCCccccCHHHHHHHHHHHHHhccCCCe
Confidence 34679999873 34444 566666665 599999995332 21 112222221223333344444444433 2334
Q ss_pred EEEecc----CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcE---EEecCCCCHHHHHH
Q psy4398 173 SCKIRV----FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPV---IANGGSKEIVDYGG 245 (306)
Q Consensus 173 ~vKir~----g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipv---ia~GGI~s~~~~~~ 245 (306)
.+=-|. ....++.++=++...++|+|.|-+++. .+.+.++++.+.++.|+ +..||-.-.-+.++
T Consensus 151 ~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~---------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~e 221 (294)
T TIGR02319 151 TIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAM---------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKE 221 (294)
T ss_pred EEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCC---------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHH
Confidence 443332 235677888899999999999998752 35688999999998887 44444322223444
Q ss_pred HHHhh
Q psy4398 246 VFSLN 250 (306)
Q Consensus 246 ~l~~~ 250 (306)
+.+.|
T Consensus 222 L~~lG 226 (294)
T TIGR02319 222 LESIG 226 (294)
T ss_pred HHHcC
Confidence 44443
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.25 Score=43.12 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHH
Q psy4398 110 TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~ 188 (306)
..+++++.+ .++. +.|.|+||-. .++++ ++.+++..++|++--++.....+ ..
T Consensus 61 n~~~~~i~~---i~~~~~ld~VQlHG~----------------e~~~~----~~~l~~~~~~~v~kai~v~~~~~---~~ 114 (208)
T COG0135 61 NESIEEILE---IAEELGLDAVQLHGD----------------EDPEY----IDQLKEELGVPVIKAISVSEEGD---LE 114 (208)
T ss_pred CCCHHHHHH---HHHhcCCCEEEECCC----------------CCHHH----HHHHHhhcCCceEEEEEeCCccc---hh
Confidence 345555554 3444 6799999822 24444 45556655788887777533222 22
Q ss_pred HHHHHHcCCcEEEEcccCCC--CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCC
Q psy4398 189 CKRLEACGIIAIGVHGRTKA--ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVE 261 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~--~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p 261 (306)
....+..-+|.+.+...... ++...+.+|+.+... ....|++..||++ +++..++++. ++-+-+++=.+|
T Consensus 115 ~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 115 LAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred hhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCCEEEECCCC-HHHHHHHHHhcCCceEEeccccccCC
Confidence 33344566899988775432 233335688887766 4578999999987 8888888875 456666666666
|
|
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.33 Score=45.97 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=96.1
Q ss_pred CceEEEecCCCHHHH-HHHHHHHhcC-CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEec
Q psy4398 102 NKIILQIGTADPERA-LEAAKKVEHD-VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~g~~~~~~-~~aa~~~~~g-~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir 177 (306)
.|+...+...++++. .++.+.+++| |..+-+.+|. .+++.-.+.++++|+.++ +.+.+-..
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~l~iDaN 196 (365)
T cd03318 132 LPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRASVRVDVN 196 (365)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 355545544454444 4444455568 9999997542 123333566788888774 33444444
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhcccc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNH 257 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGral 257 (306)
.+|+.+++.++++.+++.++.+|- ++. .+.+++..+++++..++||.+.=.+.+.+++.++++.+. ...+
T Consensus 197 ~~~~~~~A~~~~~~l~~~~~~~iE-------eP~-~~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~--~d~~ 266 (365)
T cd03318 197 QAWDESTAIRALPRLEAAGVELIE-------QPV-PRENLDGLARLRSRNRVPIMADESVSGPADAFELARRGA--ADVF 266 (365)
T ss_pred CCCCHHHHHHHHHHHHhcCcceee-------CCC-CcccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCC--CCeE
Confidence 468889999999999999876652 222 234778889999999999887666788889988887532 0001
Q ss_pred CCCC-C----chHHHHHHHHHhcCCCC
Q psy4398 258 YPVE-K----LPKTILYAHCKYKRFEV 279 (306)
Q Consensus 258 l~~p-~----~~~~~l~~~~~~~g~~~ 279 (306)
.-+| . ..-+.+.++.+++|++.
T Consensus 267 ~~d~~~~GGit~~~~~~~~a~~~gi~~ 293 (365)
T cd03318 267 SLKIAKSGGLRRAQKVAAIAEAAGIAL 293 (365)
T ss_pred EEeecccCCHHHHHHHHHHHHHcCCce
Confidence 1122 1 12235566677777763
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0086 Score=50.95 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=46.3
Q ss_pred HHHHHHcCCcEEEEcccCC---CCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 189 CKRLEACGIIAIGVHGRTK---AERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~---~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
++.+.+.|+|++.+..... +... .|..++.+.++++..++||++-||| +.+++.++.+.|+
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~-~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~~Ga 171 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGA-PPLGLDGLREIARASPIPVYALGGI-TPENIPELREAGA 171 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS--TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-
T ss_pred HHHhhhcCCCEEEECCccCCCCCccc-cccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCC
Confidence 7777889999999876532 2222 5668999999999999999999999 5888888887654
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PRK09197 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.067 Score=50.10 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=92.2
Q ss_pred CCCCceEEEecCCCH---HHHHHHHHH----H----hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 99 REKNKIILQIGTADP---ERALEAAKK----V----EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 99 ~~~~p~ivql~g~~~---~~~~~aa~~----~----~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
+...|+++.|-+... +...++.+. + +.||+-|.+..|. -.++++.+...++++....
T Consensus 90 ~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~-----------lpfEeNI~~TkevVe~Ah~- 157 (350)
T PRK09197 90 HYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSE-----------EPLEENIEICSKYLERMAK- 157 (350)
T ss_pred HCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCC-----------CCHHHHHHHHHHHHHHHHH-
Confidence 356899999976643 222222221 1 1258888886442 3466788888888877764
Q ss_pred ccccEEEEecc--C----C----C-----hHHHHHHHHHHHHcCC----cEEEEcccCCCCCCC-C--CCcHHHHHHHHh
Q psy4398 168 LSIPVSCKIRV--F----H----N-----EADTIALCKRLEACGI----IAIGVHGRTKAERPR-H--RNRIEMIRTLTQ 225 (306)
Q Consensus 168 ~~~pv~vKir~--g----~----~-----~~~~~~~a~~l~~~G~----d~i~v~~~~~~~~~~-~--p~~~~~v~~i~~ 225 (306)
.+++|-.-+.. | . . ..+..+..+-+++.|+ |.|-+.-.+..+.|. + ..+++.+++|++
T Consensus 158 ~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~ 237 (350)
T PRK09197 158 AGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQE 237 (350)
T ss_pred cCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHH
Confidence 46666665553 1 1 0 1223344444456677 999886666555564 2 258899999999
Q ss_pred hC---------CCcEEEecCCCCH-HHHHHHHHhhh
Q psy4398 226 HL---------KIPVIANGGSKEI-VDYGGVFSLNC 251 (306)
Q Consensus 226 ~~---------~ipvia~GGI~s~-~~~~~~l~~~v 251 (306)
.+ ++|++..||-..+ ++.+++++.|+
T Consensus 238 ~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~GI 273 (350)
T PRK09197 238 YVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYGV 273 (350)
T ss_pred HHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCCC
Confidence 99 7999999997765 67788888765
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.083 Score=49.01 Aligned_cols=165 Identities=14% Similarity=0.227 Sum_probs=96.2
Q ss_pred ceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecC-CCCCCceEE-Ee-
Q psy4398 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC-PREKNKIIL-QI- 108 (306)
Q Consensus 32 ~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~p~iv-ql- 108 (306)
||+| ...-|.....++.+.|++++.+.-....-. .+...+.. ++-...+ .+...+ .....++++ -+
T Consensus 36 kivm---lTAyD~~sA~i~d~aGvD~ILVGDSlgmv~-lG~~~T~~-Vtld~mi------~H~~aV~Rga~~a~vVaDmP 104 (332)
T PLN02424 36 PITM---VTAYDYPSAVHVDSAGIDVCLVGDSAAMVV-HGHDTTLP-ITLDEML------VHCRAVARGANRPLLVGDLP 104 (332)
T ss_pred cEEE---EecCCHHHHHHHHHcCCCEEEECCcHHHHh-cCCCCCCC-cCHHHHH------HHHHHHhccCCCCEEEeCCC
Confidence 5554 345677888888889998888763321110 01110000 0000000 001111 112345555 44
Q ss_pred ---cCCCHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-----
Q psy4398 109 ---GTADPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV----- 178 (306)
Q Consensus 109 ---~g~~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~----- 178 (306)
.+.++++..+.|.++ ++ |+++|.|--|. ....++|+++. ..++||.-=+.+
T Consensus 105 fgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~ 165 (332)
T PLN02424 105 FGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAI 165 (332)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceee
Confidence 234788877766655 64 99999995221 22345566665 458998843333
Q ss_pred ---------CCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 179 ---------FHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 179 ---------g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
|-+. ..+++-|+.++++||+.|.+-+. | -+++++|.+.+++|+|+.|-
T Consensus 166 ~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~V--------p--~~la~~It~~l~IPtIGIGA 225 (332)
T PLN02424 166 SVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECV--------P--APVAAAITSALQIPTIGIGA 225 (332)
T ss_pred hhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCC--------c--HHHHHHHHHhCCCCEEeecC
Confidence 1122 24778899999999999998764 2 14889999999999998864
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.062 Score=49.14 Aligned_cols=125 Identities=14% Similarity=0.201 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~ 188 (306)
|.+.+.+..+.+. .|.+++-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+.++++++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~Gst----------GE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~st~~~i~~ 88 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGST----------GEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA-NSTEEAIEL 88 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTT----------TTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC----------cccccCCHHHHHHHHHHHHHHccCceEEEecCcc-hhHHHHHHH
Confidence 5577777777554 599999996442 1111112233344455544433 4788888773 467889999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
++.+++.|+|++.+...... .+....-.++.+.|.+++++||+.= |---|++...++.+
T Consensus 89 a~~a~~~Gad~v~v~~P~~~-~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 89 ARHAQDAGADAVLVIPPYYF-KPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp HHHHHHTT-SEEEEEESTSS-SCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred HHHHhhcCceEEEEeccccc-cchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc
Confidence 99999999999988653211 1111113567788888888987653 22334555555444
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.019 Score=49.30 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=51.5
Q ss_pred HHHHHcCCcEEEEcccCCCC---CCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 190 KRLEACGIIAIGVHGRTKAE---RPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~---~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
..+.+.|+|++.+....... ....+..++.++++++.. ++||++.|||+ .+++.++++. ++++|++++..
T Consensus 110 ~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~-~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGIT-LENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcC-HHHHHHHHHcCCCEEEEhHHhhCC
Confidence 34667899999876543221 122234688899988776 59999999994 8999998886 45999998853
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.075 Score=48.81 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHH-h-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAKKV-E-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
-|.+.+.+..+.+ . .|+++|=++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+.++++
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~Gst----------GE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~~ai 89 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGGST----------GEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTAEAQ 89 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECCCc----------cccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHHHHH
Confidence 4567788777755 5 699999996432 1112222333344555554444 3688887753 4678899
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
++++.+++.|+|++.+....-.. +....-+++.++|.+++++||+.= |---+++.+.++.+
T Consensus 90 ~~a~~a~~~Gad~v~v~~P~y~~-~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 90 ELAKYATELGYDAISAVTPFYYP-FSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCC-CCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 99999999999999987532111 111123566778888888887654 32335665555543
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.14 Score=47.00 Aligned_cols=123 Identities=11% Similarity=0.116 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHh-cC-CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAKKVE-HD-VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g-~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
-|.+.+.+..+.+. .| +++|=++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+.++++
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~Gst----------GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i 86 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVGGST----------GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKEAV 86 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEECCcc----------cccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHH
Confidence 45677777777654 58 9999986442 2222223344445555555444 3688877763 4678899
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCC---CcHHHHHHHHhhC-CCcEEE------ecCCCCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHR---NRIEMIRTLTQHL-KIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p---~~~~~v~~i~~~~-~ipvia------~GGI~s~~~~~~~l~ 248 (306)
++++.+++.|+|++.+.... |..+ .-+++.+++.+++ ++||+. .|---+++...++.+
T Consensus 87 ~la~~a~~~Gad~v~v~~P~----y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 87 ELGKYATELGYDCLSAVTPF----YYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred HHHHHHHHhCCCEEEEeCCc----CCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhc
Confidence 99999999999999985432 2211 1345667776666 677662 343445565555543
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.14 Score=50.66 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhhh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+..+-++.|.++|+|.|.+.... ..+ ...|+.+++|++... .+| ..|+|.|.++++.+++.|+
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~---g~~-~~~~~~i~~ik~~~p~~~v-i~g~v~t~e~a~~a~~aGa 311 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQ---GDS-IYQLEMIKYIKKTYPELDV-IGGNVVTMYQAQNLIQAGV 311 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCC---CCc-HHHHHHHHHHHHhCCCCcE-EEecCCCHHHHHHHHHcCc
Confidence 345788889999999999997531 111 135789999999884 554 4688999999999999865
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.13 Score=47.26 Aligned_cols=127 Identities=16% Similarity=0.090 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
-|.+.+.+..+.+. .|+++|=++-+.- ..+--+..++.+.+..+++++.. .+||.+-+.. .+.+++++++
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~GstG------E~~~Ls~~Er~~l~~~~~~~~~g--~~pvi~gv~~-~~t~~ai~~a 88 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGGTSG------EPGSLTLEERKQAIENAIDQIAG--RIPFAPGTGA-LNHDETLELT 88 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCc------ccccCCHHHHHHHHHHHHHHhCC--CCcEEEECCc-chHHHHHHHH
Confidence 35567777777554 5999999964431 11111222333333344443332 4788877763 4677899999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEe------cCCCCHHHHHHHH
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIAN------GGSKEIVDYGGVF 247 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~------GGI~s~~~~~~~l 247 (306)
+.+++.|+|++.+....-.. +....-.++.+.|.+++ ++||+.= |---+++...++.
T Consensus 89 ~~A~~~Gad~v~v~pP~y~~-~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~ 152 (294)
T TIGR02313 89 KFAEEAGADAAMVIVPYYNK-PNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLR 152 (294)
T ss_pred HHHHHcCCCEEEEcCccCCC-CCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 99999999999987542111 11112356677888888 7887632 3334566665554
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.046 Score=46.43 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEeccCC---ChHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKIRVFH---NEAD 184 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~g~---~~~~ 184 (306)
+.+.+.+.++.+. .|+++|.++. ++++.+++.+ .+|+.+++.... ..++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g------------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~ 66 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP------------------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEV 66 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH------------------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHH
Confidence 7778888888775 4999999962 3444444433 378999988521 1578
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCC--CCCcHHHHHHHHhhC--CCcEEEec---CCCCHHHHHHH
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPR--HRNRIEMIRTLTQHL--KIPVIANG---GSKEIVDYGGV 246 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~--~p~~~~~v~~i~~~~--~ipvia~G---GI~s~~~~~~~ 246 (306)
..+.++.+.+.|+|++.++..... .+. .....+.++++++.+ ++|++.-- ...+.+...++
T Consensus 67 ~~~~a~~a~~~Gad~i~v~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~ 134 (201)
T cd00945 67 KVAEVEEAIDLGADEIDVVINIGS-LKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKA 134 (201)
T ss_pred HHHHHHHHHHcCCCEEEEeccHHH-HhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHH
Confidence 999999999999999998643210 000 011257778888884 88977532 22256655554
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.17 Score=46.09 Aligned_cols=125 Identities=12% Similarity=0.064 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHH
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~ 188 (306)
.-|.+.+.+..+.+. .|+|+|=++.+. |-...-..+.-.++++.+.+.++ ++.+-+.. .+.++++++
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~Gst----------GE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg~-~~~~~ai~~ 83 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVAGTT----------GLGPSLSFQEKLELLKAYSDITD-KVIFQVGS-LNLEESIEL 83 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcccC----------CCcccCCHHHHHHHHHHHHHHcC-CEEEEeCc-CCHHHHHHH
Confidence 456778888888665 599999996442 22222233334555555555554 35555542 567899999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHH
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia------~GGI~s~~~~~~~l~ 248 (306)
++.++++|+|++.+....-........-.++.+++.+ ++||+. +|---+++...++.+
T Consensus 84 a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~ 147 (279)
T cd00953 84 ARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKK 147 (279)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHh
Confidence 9999999999999865321110000112355667776 778663 343456777666653
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.15 Score=45.67 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=88.6
Q ss_pred HHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------------C------
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------------F------ 179 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------------g------ 179 (306)
.|+.-+. |+++|-+ +.-|. .+.| .++ .++.+++.+.+||.+|-=+ |
T Consensus 71 ia~~Ye~~GAa~iSV-LTd~~------~F~G----s~e----~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLL 135 (254)
T COG0134 71 IAKAYEEGGAAAISV-LTDPK------YFQG----SFE----DLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLL 135 (254)
T ss_pred HHHHHHHhCCeEEEE-ecCcc------ccCC----CHH----HHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHH
Confidence 4454444 7999888 22222 2333 334 4577788899999999432 2
Q ss_pred ----CChHHHHHHHHHHHHcCCcEEE-EcccCC-------C-------CCC--CCCCcHHHHHHHHhhC--CCcEEEecC
Q psy4398 180 ----HNEADTIALCKRLEACGIIAIG-VHGRTK-------A-------ERP--RHRNRIEMIRTLTQHL--KIPVIANGG 236 (306)
Q Consensus 180 ----~~~~~~~~~a~~l~~~G~d~i~-v~~~~~-------~-------~~~--~~p~~~~~v~~i~~~~--~ipvia~GG 236 (306)
.+.+...++.+...+.|.+.++ +|.... . .+- .-..+++...++.+.. +.-+|+-.|
T Consensus 136 I~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESG 215 (254)
T COG0134 136 IVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESG 215 (254)
T ss_pred HHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCC
Confidence 1334578888888899998887 665320 0 000 1124667778888877 478999999
Q ss_pred CCCHHHHHHHHHhhh---hhccccCCCCCc
Q psy4398 237 SKEIVDYGGVFSLNC---AFLRNHYPVEKL 263 (306)
Q Consensus 237 I~s~~~~~~~l~~~v---~vGrall~~p~~ 263 (306)
|.+++|++.+.+.|+ -||+++++.+..
T Consensus 216 I~~~~dv~~l~~~ga~a~LVG~slM~~~~~ 245 (254)
T COG0134 216 ISTPEDVRRLAKAGADAFLVGEALMRADDP 245 (254)
T ss_pred CCCHHHHHHHHHcCCCEEEecHHHhcCCCH
Confidence 999999999998854 999999997754
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.071 Score=47.62 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=80.7
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C---CChH---HHHHHHHHHHHc
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F---HNEA---DTIALCKRLEAC 195 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g---~~~~---~~~~~a~~l~~~ 195 (306)
+.|+|.|||+-.-. .|| + .|. ..+++.+++.+++||.|=+|+ | .+.+ ...+-++.+.+.
T Consensus 19 ~~GAdRiELc~~L~--------~GG-l--TPS--~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~ 85 (248)
T PRK11572 19 QAGADRIELCAAPK--------EGG-L--TPS--LGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVREL 85 (248)
T ss_pred HcCCCEEEEccCcC--------CCC-c--CCC--HHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 35999999953211 111 1 111 224555666678998888886 2 2233 356677888899
Q ss_pred CCcEEEEcccCCCCCC-------------------CC-----CCcHHHHHHHHhhCCC-cEEEecCCCCHHHHHHHHHhh
Q psy4398 196 GIIAIGVHGRTKAERP-------------------RH-----RNRIEMIRTLTQHLKI-PVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 196 G~d~i~v~~~~~~~~~-------------------~~-----p~~~~~v~~i~~~~~i-pvia~GGI~s~~~~~~~l~~~ 250 (306)
|+|++++-.-+.++.. .. +...+.+.++.+. ++ -|..+||-.++.+..+.++.+
T Consensus 86 GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~l-G~~rILTSGg~~~a~~g~~~L~~l 164 (248)
T PRK11572 86 GFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADL-GVARILTSGQQQDAEQGLSLIMEL 164 (248)
T ss_pred CCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHc-CCCEEECCCCCCCHHHHHHHHHHH
Confidence 9999997443322110 00 1012233444433 55 578889988888887777776
Q ss_pred hhh--ccccCCCCCchHHHHHHHHHhcCCCCCcceehh
Q psy4398 251 CAF--LRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ 286 (306)
Q Consensus 251 v~v--Grall~~p~~~~~~l~~~~~~~g~~~~~~~~~~ 286 (306)
+.. ++-++.+--+....+.++ .+.| .++||.+.
T Consensus 165 v~~a~~~~Im~GgGV~~~Nv~~l-~~tG--~~~~H~s~ 199 (248)
T PRK11572 165 IAASDGPIIMAGAGVRLSNLHKF-LDAG--VREVHSSA 199 (248)
T ss_pred HHhcCCCEEEeCCCCCHHHHHHH-HHcC--CCEEeeCC
Confidence 532 223455442222334444 3455 56666543
|
|
| >KOG1606|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.054 Score=46.80 Aligned_cols=131 Identities=24% Similarity=0.296 Sum_probs=82.3
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
|+++++ |+-.|..-=..|... + ..-|-.-+.||+.+ +.++.++.+||..|.|+|-. --|+.|+..|+|
T Consensus 34 A~iAE~aGACaVmalervPadi-R-~~GgV~RMsDP~mI----Kei~~aVsiPVMAk~RiGHF-----VEAQIlE~l~vD 102 (296)
T KOG1606|consen 34 ARIAEEAGACAVMALERVPADI-R-AQGGVARMSDPRMI----KEIKNAVSIPVMAKVRIGHF-----VEAQILEALGVD 102 (296)
T ss_pred HHHHHhcCcceEeeeccCCHhH-H-hcCCeeecCCHHHH----HHHHHhccchhhhhhhhhhh-----hHHHHHHHhccC
Confidence 455654 766665544456432 2 22345667888865 45566778999999997642 336788888999
Q ss_pred EEE----Ecc--------------------c-----------------CCCCCCCC------------------------
Q psy4398 199 AIG----VHG--------------------R-----------------TKAERPRH------------------------ 213 (306)
Q Consensus 199 ~i~----v~~--------------------~-----------------~~~~~~~~------------------------ 213 (306)
+|. ++. | ++.+...+
T Consensus 103 YiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~ 182 (296)
T KOG1606|consen 103 YIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDD 182 (296)
T ss_pred ccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCH
Confidence 885 110 0 00000000
Q ss_pred ----------CCcHHHHHHHHhhCCCcE--EEecCCCCHHHHHHHHHh---hhhhccccCCCC
Q psy4398 214 ----------RNRIEMIRTLTQHLKIPV--IANGGSKEIVDYGGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 214 ----------p~~~~~v~~i~~~~~ipv--ia~GGI~s~~~~~~~l~~---~v~vGrall~~p 261 (306)
..-++++.+.++.-++|| ++.|||.++.|+.-+... |+-+|+.++..+
T Consensus 183 dev~t~Ak~i~aP~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~ 245 (296)
T KOG1606|consen 183 DEVFTFAKEIAAPYDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSG 245 (296)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHcCCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCC
Confidence 012456666666667786 589999999999877764 668888888754
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.53 Score=41.12 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
..++++..+.++ +.+.|.|+||-.. .++ .++.+++..+++++-.++... ..+....
T Consensus 63 ~~~~~~i~~~~~--~~~~d~vQLHg~e----------------~~~----~~~~l~~~~~~~iik~i~v~~-~~~l~~~- 118 (210)
T PRK01222 63 NASDEEIDEIVE--TVPLDLLQLHGDE----------------TPE----FCRQLKRRYGLPVIKALRVRS-AGDLEAA- 118 (210)
T ss_pred CCCHHHHHHHHH--hcCCCEEEECCCC----------------CHH----HHHHHHhhcCCcEEEEEecCC-HHHHHHH-
Confidence 445655554433 2378999998322 222 345666666777776666422 1222221
Q ss_pred HHHHHcCCcEEEEcccCCC-CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccC
Q psy4398 190 KRLEACGIIAIGVHGRTKA-ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHY 258 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~-~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall 258 (306)
... ...+|++.+...... +......+|+.+. +.++.|++..|||+ +++..++++. |+-+-+.+=
T Consensus 119 ~~~-~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~---~~~~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgvE 187 (210)
T PRK01222 119 AAY-YGDADGLLLDAYVGLPGGTGKTFDWSLLP---AGLAKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGVE 187 (210)
T ss_pred Hhh-hccCCEEEEcCCCCCCCCCCCccchHHhh---hccCCCEEEECCCC-HHHHHHHHHhcCCCEEEecCceE
Confidence 111 236899988764421 1112234677661 22367999999986 8888888864 555555553
|
|
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.3 Score=44.07 Aligned_cols=151 Identities=11% Similarity=0.066 Sum_probs=95.6
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~ 178 (306)
..|+...+...+++...++.+..+.||..+-+.+|- .+++.-.+.++++++.++ ..+.+--..
T Consensus 72 ~v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 136 (263)
T cd03320 72 RIPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVGA---------------TSFEEDLARLRALREALPADAKLRLDANG 136 (263)
T ss_pred CcceeEEecCCCHHHHHHHHHHHhCCCCEEEEEECC---------------CChHHHHHHHHHHHHHcCCCCeEEEeCCC
Confidence 345666666666644444444445699999997541 123444567788888774 334444444
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHY 258 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall 258 (306)
+|+.+++.++++.+++.++.++- ++.. +.+++-.++++ +++||.+.=.+.+..++.++++.+.. ..+-
T Consensus 137 ~w~~~~A~~~~~~l~~~~i~~iE-------qP~~-~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~--d~v~ 204 (263)
T cd03320 137 GWSLEEALAFLEALAAGRIEYIE-------QPLP-PDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGAL--GALV 204 (263)
T ss_pred CCCHHHHHHHHHhhcccCCceEE-------CCCC-hHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCC--CEEE
Confidence 68999999999999998887763 2222 34666667776 68999887778888888888875320 0011
Q ss_pred CCC-C----chHHHHHHHHHhcCCC
Q psy4398 259 PVE-K----LPKTILYAHCKYKRFE 278 (306)
Q Consensus 259 ~~p-~----~~~~~l~~~~~~~g~~ 278 (306)
-+| . ..-..+.++.+++|++
T Consensus 205 ~k~~~~GGit~~~~i~~~a~~~gi~ 229 (263)
T cd03320 205 LKPALLGGPRALLELAEEARARGIP 229 (263)
T ss_pred ECchhcCCHHHHHHHHHHHHHcCCC
Confidence 122 1 1123667778888877
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.013 Score=51.00 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=84.2
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEcc----CCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINM----GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~----gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
+..+|...+...+.+..+.+++ |+|.+-+.+ -+|+ .-+--++++++++.+..|+.|=+=.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn---------------~~~g~~~i~~i~~~~~~~~DvHLMv 66 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN---------------LTFGPDIIKAIRKITDLPLDVHLMV 66 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS---------------B-B-HHHHHHHHTTSSSEEEEEEES
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCc---------------ccCCHHHHHHHhhcCCCcEEEEeee
Confidence 5677888888888888888875 888755532 2444 2223456788888888898887743
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccC--------------------------C-------------------CCCCCC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRT--------------------------K-------------------AERPRH 213 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~--------------------------~-------------------~~~~~~ 213 (306)
.+ ..++.+.+.++|++.|++|-.. . ..++.+
T Consensus 67 -~~---P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 67 -EN---PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp -SS---GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSS
T ss_pred -cc---HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCc
Confidence 22 3356666777788888776421 0 111222
Q ss_pred ----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 214 ----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 214 ----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
|..++-++++++.. ++.|..=|||+ .+++..+.++|+ .+|++++.
T Consensus 143 q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~~aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 143 QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLVEAGADIFVAGSAIFK 199 (201)
T ss_dssp B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHHHHT--EEEESHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhC
Confidence 12345555555443 47888899987 567888887766 88998875
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.12 Score=46.43 Aligned_cols=160 Identities=21% Similarity=0.288 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcc-cccccccCCCCCceeeecCCCCCCceEEEe----cCCCHH
Q psy4398 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL-LNTIDFVDPLDGSVVFRTCPREKNKIILQI----GTADPE 114 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~p~ivql----~g~~~~ 114 (306)
..-|.++..++.++|++++...-.-..-. .+...+... +..+-+. -+...+-. ....+++-+ .+.+++
T Consensus 22 TaYD~~~A~~~d~agvD~iLVGDSlgmv~-~G~~sT~~vtld~mi~h----~~aV~Rga--~~~~vv~DmPf~sy~~s~e 94 (261)
T PF02548_consen 22 TAYDYPSARIADEAGVDIILVGDSLGMVV-LGYDSTLPVTLDEMIYH----TKAVRRGA--PNAFVVADMPFGSYQASPE 94 (261)
T ss_dssp E--SHHHHHHHHHTT-SEEEE-TTHHHHT-T--SSSTT--HHHHHHH----HHHHHHH---TSSEEEEE--TTSSTSSHH
T ss_pred ecccHHHHHHHHHcCCCEEEeCCcHHHhe-eCCCCCcCcCHHHHHHH----HHHHHhcC--CCceEEecCCcccccCCHH
Confidence 35677888888899999887763211100 000000000 0000000 00000111 123345554 124677
Q ss_pred HHHHHHH-HHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--------------
Q psy4398 115 RALEAAK-KVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-------------- 178 (306)
Q Consensus 115 ~~~~aa~-~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-------------- 178 (306)
+..+.|. .+++ |+|+|-|--+ . ...++++++.+. ++||.-=+.+
T Consensus 95 ~av~nA~rl~ke~GadaVKlEGg-------------~------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~~~~GGyr~q 154 (261)
T PF02548_consen 95 QAVRNAGRLMKEAGADAVKLEGG-------------A------EIAETIKALVDA-GIPVMGHIGLTPQSVHQLGGYRVQ 154 (261)
T ss_dssp HHHHHHHHHHHTTT-SEEEEEBS-------------G------GGHHHHHHHHHT-T--EEEEEES-GGGHHHHTSS--C
T ss_pred HHHHHHHHHHHhcCCCEEEeccc-------------h------hHHHHHHHHHHC-CCcEEEEecCchhheeccCCceEE
Confidence 6666555 4564 9999999522 1 224566666553 8999877654
Q ss_pred CCChH---HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 179 FHNEA---DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 179 g~~~~---~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
|-+.+ ...+-|+.++++|+-.|.+.... -++.++|.+.+++|+|+-|.
T Consensus 155 Gk~~~~a~~l~~~A~ale~AGaf~ivlE~vp----------~~la~~It~~l~IPtIGIGa 205 (261)
T PF02548_consen 155 GKTAEEAEKLLEDAKALEEAGAFAIVLECVP----------AELAKAITEALSIPTIGIGA 205 (261)
T ss_dssp STSHHHHHHHHHHHHHHHHHT-SEEEEESBB----------HHHHHHHHHHSSS-EEEESS
T ss_pred ecCHHHHHHHHHHHHHHHHcCccEEeeecCH----------HHHHHHHHHhCCCCEEecCC
Confidence 12222 37888999999999999987642 26889999999999999886
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.11 Score=45.81 Aligned_cols=124 Identities=11% Similarity=0.050 Sum_probs=74.8
Q ss_pred HHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 120 AKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 120 a~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
++.++ .|+|+|-+..+= ++. ..+.+.+.++..++ .++.+.+=+. +. +-++.+.+.|.|
T Consensus 78 ~~~l~~~G~~~vii~~se-----r~~--------~~~e~~~~v~~a~~-~Gl~~I~~v~---~~----~~~~~~~~~~~~ 136 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSE-----RRL--------TLADIEAVVERAKK-LGLESVVCVN---NP----ETSAAAAALGPD 136 (223)
T ss_pred HHHHHHcCCCEEEEeccc-----ccc--------CHHHHHHHHHHHHH-CCCeEEEEcC---CH----HHHHHHhcCCCC
Confidence 45555 499999885331 011 12235667777665 3655444222 32 233445678888
Q ss_pred EEEEcccCCCCC--C---CCCCc-HHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCCch
Q psy4398 199 AIGVHGRTKAER--P---RHRNR-IEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEKLP 264 (306)
Q Consensus 199 ~i~v~~~~~~~~--~---~~p~~-~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~~~ 264 (306)
.|-+-++...+. . ..|.. .+.++.+++.. ++||++.|||++.++++.+++. ++.+|++++.-+.+.
T Consensus 137 ~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~ 212 (223)
T PRK04302 137 YVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPE 212 (223)
T ss_pred EEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHH
Confidence 887654311111 0 11222 24456677655 7999999999999999999865 569999999654443
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.028 Score=51.97 Aligned_cols=62 Identities=16% Similarity=0.047 Sum_probs=47.2
Q ss_pred HHHHHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 189 CKRLEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
++.+.+.|+|++.+....... ....+..++.++++++.+++||+|-||| +.+++.++++.|+
T Consensus 239 ~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~g~ 302 (312)
T PRK08999 239 LARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAREHGA 302 (312)
T ss_pred HHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHhCC
Confidence 456667899999987643211 1123457888999999999999999999 7999999888754
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.39 Score=46.95 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
+..+-++.+.++|+|.|.+..... .. ...++.++++++.+ ++||++ |+|.|.++++++++.|+
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g---~~-~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGa 287 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG---HS-IYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGA 287 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC---cH-hHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCC
Confidence 456777788899999999865432 11 23568899999986 899988 88999999999999876
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.11 Score=48.29 Aligned_cols=141 Identities=9% Similarity=0.050 Sum_probs=93.6
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHHhcC-----------CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 99 REKNKIILQIGTADPERALEAAKKVEHD-----------VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~~~aa~~~~~g-----------~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
+.+.|+++.|-+...+++..+-+.+..| |+-|.+..|. -.++++.+...++++....
T Consensus 83 ~~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~-----------l~~eeNi~~T~~vve~Ah~- 150 (340)
T cd00453 83 HYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSE-----------ESLQENIEICSKYLERMSK- 150 (340)
T ss_pred HCCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCC-----------CCHHHHHHHHHHHHHHHHH-
Confidence 4578999999877644454455555678 8888886443 2355677788888877754
Q ss_pred ccccEEEEecc--CC------C-------hHHHHHHHHHHHHcC----CcEEEEcccCCCCCCC---CCCcHHHHHHHHh
Q psy4398 168 LSIPVSCKIRV--FH------N-------EADTIALCKRLEACG----IIAIGVHGRTKAERPR---HRNRIEMIRTLTQ 225 (306)
Q Consensus 168 ~~~pv~vKir~--g~------~-------~~~~~~~a~~l~~~G----~d~i~v~~~~~~~~~~---~p~~~~~v~~i~~ 225 (306)
.+++|-.-+.. |. . ..+..+..+.+++.| +|.|-+.=.+..+.|. ...+++.+++|++
T Consensus 151 ~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~ 230 (340)
T cd00453 151 IGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQE 230 (340)
T ss_pred cCCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHH
Confidence 36666665553 10 0 112445555556788 9999865444444443 2358899999999
Q ss_pred hC---------CCcEEEecCCCCH-HHHHHHHHhhh
Q psy4398 226 HL---------KIPVIANGGSKEI-VDYGGVFSLNC 251 (306)
Q Consensus 226 ~~---------~ipvia~GGI~s~-~~~~~~l~~~v 251 (306)
.+ ++|++..||-..+ ++++++++.|+
T Consensus 231 ~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~~Gi 266 (340)
T cd00453 231 YVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGV 266 (340)
T ss_pred HHHhhcccCCCCCceEEeCCCCCCHHHHHHHHHcCC
Confidence 88 7999999997765 55677777765
|
This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.8 Score=42.93 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=72.4
Q ss_pred HHhcCCCEEEEc--cCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-CC------C----hHHHHHH
Q psy4398 122 KVEHDVAAIDIN--MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FH------N----EADTIAL 188 (306)
Q Consensus 122 ~~~~g~d~veln--~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g~------~----~~~~~~~ 188 (306)
.++.|+|+|-++ +|++.. .+..+.+.+++++.. ..++|+.+=+-. |. + ++-+...
T Consensus 155 AlrLGAdAV~~tvy~Gs~~E-----------~~ml~~l~~i~~ea~-~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~A 222 (348)
T PRK09250 155 ALRLGAVAVGATIYFGSEES-----------RRQIEEISEAFEEAH-ELGLATVLWSYLRNSAFKKDGDYHTAADLTGQA 222 (348)
T ss_pred HHHCCCCEEEEEEecCCHHH-----------HHHHHHHHHHHHHHH-HhCCCEEEEecccCcccCCcccccccHHHHHHH
Confidence 344599987664 443221 011233344444432 358897763222 21 1 2346677
Q ss_pred HHHHHHcCCcEEEEcccCC-------------CCCCC---CCCcHHHHHHHHhhC---CCcEEEecCCC-CHHHH----H
Q psy4398 189 CKRLEACGIIAIGVHGRTK-------------AERPR---HRNRIEMIRTLTQHL---KIPVIANGGSK-EIVDY----G 244 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~-------------~~~~~---~p~~~~~v~~i~~~~---~ipvia~GGI~-s~~~~----~ 244 (306)
++...+.|+|.|-+.-.+. ..-|. -...-+.++.+.+.+ ++||+..||=. +.+++ +
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 7888899999998742211 00011 111235566666666 79999999955 33332 3
Q ss_pred HH---HHh---hhhhccccCCCCCch
Q psy4398 245 GV---FSL---NCAFLRNHYPVEKLP 264 (306)
Q Consensus 245 ~~---l~~---~v~vGrall~~p~~~ 264 (306)
++ ++. |+.+||-+++.|.-.
T Consensus 303 ~a~~~i~aGa~Gv~iGRNIfQ~~~~e 328 (348)
T PRK09250 303 TAVINKRAGGMGLIIGRKAFQRPMAE 328 (348)
T ss_pred HHHHhhhcCCcchhhchhhhcCCcHH
Confidence 33 333 569999999887333
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=96.05 E-value=0.095 Score=44.77 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=70.2
Q ss_pred HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE--EEeccC---CChHHHHHHHH
Q psy4398 117 LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS--CKIRVF---HNEADTIALCK 190 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~--vKir~g---~~~~~~~~~a~ 190 (306)
...|+.++. |+.+|-.| . .+=++++|+.++.||+ +|-... ....-+.+-++
T Consensus 2 ~~mA~Aa~~gGA~giR~~-------------------~----~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~ 58 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRAN-------------------G----VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVD 58 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-------------------S----HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHH
T ss_pred HHHHHHHHHCCceEEEcC-------------------C----HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHH
Confidence 345565555 89999987 0 1236788999999987 443211 11223567778
Q ss_pred HHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccC
Q psy4398 191 RLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHY 258 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall 258 (306)
.+.++|+|.|-+.+..+..+ ..-.++++++++.. .+ ....|.|.+++..+.+.|+ .+|+-|.
T Consensus 59 ~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~-~l--~MADist~ee~~~A~~~G~D~I~TTLs 121 (192)
T PF04131_consen 59 ALAEAGADIIALDATDRPRP---ETLEELIREIKEKY-QL--VMADISTLEEAINAAELGFDIIGTTLS 121 (192)
T ss_dssp HHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT-SE--EEEE-SSHHHHHHHHHTT-SEEE-TTT
T ss_pred HHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC-cE--EeeecCCHHHHHHHHHcCCCEEEcccc
Confidence 88889999999887554333 22457889999988 44 4568889999999999988 8888863
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.057 Score=47.26 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=52.5
Q ss_pred HHHHHHcCCcEEEEcccCC---CCCCCCCCcHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCC
Q psy4398 189 CKRLEACGIIAIGVHGRTK---AERPRHRNRIEMIRTLTQH-LKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~---~~~~~~p~~~~~v~~i~~~-~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p 261 (306)
+..+++.|+|++.+..... +..+..+..++.+.++.+. .++||++-|||+ .+++.++++. |+++-++++..+
T Consensus 115 ~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvisai~~~~ 193 (211)
T PRK03512 115 IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVLATGVGSIAVVSAITQAA 193 (211)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHHHcCCCEEEEhhHhhCCC
Confidence 4556678999999876432 2223345677878888777 489999999987 8888888886 457888877544
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.27 Score=43.53 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=90.0
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
.+..+|...+...+.+-.+.++.|+|.+-+.+-- +.+..+.-+--++++++|+.++.|+.|=+=.
T Consensus 4 ~I~pSil~ad~~~l~~el~~l~~g~d~lH~DiMD-----------G~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv---- 68 (229)
T PRK09722 4 KISPSLMCMDLLKFKEQIEFLNSKADYFHIDIMD-----------GHFVPNLTLSPFFVSQVKKLASKPLDVHLMV---- 68 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHhCCCEEEEeccc-----------CccCCCcccCHHHHHHHHhcCCCCeEEEEEe----
Confidence 4677888888888888888777688876664321 1122222233457788888777887776652
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC----------------------------------------------CCCCCC---
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK----------------------------------------------AERPRH--- 213 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~----------------------------------------------~~~~~~--- 213 (306)
++..++++.+.++|+|.|++|.-.. ..++.+
T Consensus 69 ~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~f 148 (229)
T PRK09722 69 TDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPF 148 (229)
T ss_pred cCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhc
Confidence 2355677788888888888875310 111111
Q ss_pred -CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccc-cCC
Q psy4398 214 -RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRN-HYP 259 (306)
Q Consensus 214 -p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGra-ll~ 259 (306)
|..++-++++++.. ++.|-.=|||+ .+++..+.++|+ .+|+. ++.
T Consensus 149 i~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 149 IPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcC
Confidence 11344555555432 35577789998 788999998876 77964 876
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.13 Score=44.66 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=70.5
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
++..=+|. .+.++..++++.+.+.|+..+-++-++ |..++.++++++.++--+++.|.|.|.+++++++++|
T Consensus 9 ~liaVlr~-~~~e~a~~~~~al~~~Gi~~iEit~~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG 80 (204)
T TIGR01182 9 KIVPVIRI-DDVDDALPLAKALIEGGLRVLEVTLRT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG 80 (204)
T ss_pred CEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEeCCC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC
Confidence 45544553 467889999999999999999998654 4577889999988855689999999999999999965
Q ss_pred hhhccccCCCCCchHHHHHHHHHhcCCC
Q psy4398 251 CAFLRNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 251 v~vGrall~~p~~~~~~l~~~~~~~g~~ 278 (306)
+ .++--|.+ ..++-++++++|+.
T Consensus 81 A----~FivsP~~-~~~v~~~~~~~~i~ 103 (204)
T TIGR01182 81 A----QFIVSPGL-TPELAKHAQDHGIP 103 (204)
T ss_pred C----CEEECCCC-CHHHHHHHHHcCCc
Confidence 5 22333422 12555667777665
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.053 Score=47.02 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=50.0
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C---CChH---HHHHHHHHHHHc
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F---HNEA---DTIALCKRLEAC 195 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g---~~~~---~~~~~a~~l~~~ 195 (306)
+.|+|.|||+-+- ..|+. .|. ..+++.+++..++|+.|=+|+ | .+.+ ...+-++.+.+.
T Consensus 18 ~~GAdRiELc~~l--------~~GGl---TPS--~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~ 84 (201)
T PF03932_consen 18 AGGADRIELCSNL--------EVGGL---TPS--LGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLREL 84 (201)
T ss_dssp HTT-SEEEEEBTG--------GGT-B--------HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHT
T ss_pred HcCCCEEEECCCc--------cCCCc---CcC--HHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 4599999995321 11221 222 245666666788998888886 2 2223 366777888899
Q ss_pred CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecC
Q psy4398 196 GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGG 236 (306)
Q Consensus 196 G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GG 236 (306)
|+|++++-.-+.++. .+.+.++++.+.. +.|+...=-
T Consensus 85 GadG~VfG~L~~dg~----iD~~~~~~Li~~a~~~~~tFHRA 122 (201)
T PF03932_consen 85 GADGFVFGALTEDGE----IDEEALEELIEAAGGMPVTFHRA 122 (201)
T ss_dssp T-SEEEE--BETTSS----B-HHHHHHHHHHHTTSEEEE-GG
T ss_pred CCCeeEEEeECCCCC----cCHHHHHHHHHhcCCCeEEEeCc
Confidence 999999865444332 3444554444443 455555443
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.34 Score=42.87 Aligned_cols=139 Identities=9% Similarity=0.060 Sum_probs=87.6
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
.++..+|...+...+.+-.+++++ |+|.+-+.+- +|| .-+--.+++.+++ +.|+.|=+
T Consensus 13 ~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN---------------itfGp~~i~~i~~--~~~~DvHL 75 (228)
T PRK08091 13 QPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPF---------------FTVGAIAIKQFPT--HCFKDVHL 75 (228)
T ss_pred CeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc---------------cccCHHHHHHhCC--CCCEEEEe
Confidence 478889999999999888888875 8888666432 344 2222334556653 45666554
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccC----------------------------C-------------------CC
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRT----------------------------K-------------------AE 209 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~----------------------------~-------------------~~ 209 (306)
=. ++..++++.+.++|+|.|++|.-. + ..
T Consensus 76 Mv----~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~P 151 (228)
T PRK08091 76 MV----RDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDP 151 (228)
T ss_pred cc----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECC
Confidence 42 234556677777777777776321 0 11
Q ss_pred CCCC----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 210 RPRH----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 210 ~~~~----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
++.+ +..++-++++++.. ++.|-.=|||+ .+++..+.++|+ .+|++++.++.
T Consensus 152 GfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 152 RTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSALFSQGE 215 (228)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhhhCCCC
Confidence 1111 12344555555432 35577779987 788999888876 88999987554
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.12 Score=46.43 Aligned_cols=114 Identities=16% Similarity=0.117 Sum_probs=79.7
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.|+|+|=|.... -..+.+.++++...+ ++.-..|-+. +.+ + ++.+.++|++.|-|..
T Consensus 130 ~GADaVLLI~~~---------------L~~~~l~~l~~~a~~-lGle~lVEVh---~~~---E-l~~al~~~a~iiGINn 186 (254)
T PF00218_consen 130 AGADAVLLIAAI---------------LSDDQLEELLELAHS-LGLEALVEVH---NEE---E-LERALEAGADIIGINN 186 (254)
T ss_dssp TT-SEEEEEGGG---------------SGHHHHHHHHHHHHH-TT-EEEEEES---SHH---H-HHHHHHTT-SEEEEES
T ss_pred cCCCEeehhHHh---------------CCHHHHHHHHHHHHH-cCCCeEEEEC---CHH---H-HHHHHHcCCCEEEEeC
Confidence 499999996443 124556777766654 6888888888 322 2 3444578999999998
Q ss_pred cCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCCch
Q psy4398 205 RTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEKLP 264 (306)
Q Consensus 205 ~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~~~ 264 (306)
|.....- .+++...++...+ ++.+|+-+||.+++|+..+.+.|+ .+|+++++.|...
T Consensus 187 RdL~tf~---vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~ 248 (254)
T PF00218_consen 187 RDLKTFE---VDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPDPG 248 (254)
T ss_dssp BCTTTCC---BHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHH
T ss_pred ccccCcc---cChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHH
Confidence 8755432 3567777787777 588999999999999999998754 9999999876443
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.2 Score=44.65 Aligned_cols=195 Identities=18% Similarity=0.209 Sum_probs=104.9
Q ss_pred CCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec
Q psy4398 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG 109 (306)
Q Consensus 30 ~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~ 109 (306)
++..+++|.+ -|..=..++.+.|+..++|-........ +.+ ..++++-.+... ...+.+...+.|+++-+-
T Consensus 7 ~~~~l~~p~~--~D~~SAr~~e~~Gf~ai~~sg~~~a~s~-G~p-D~~~lt~~e~~~-----~~~~I~~~~~iPv~vD~d 77 (238)
T PF13714_consen 7 PGKPLVLPNV--WDALSARLAERAGFDAIATSGAGVAASL-GYP-DGGLLTLTEMLA-----AVRRIARAVSIPVIVDAD 77 (238)
T ss_dssp SSSSEEEEEE--SSHHHHHHHHHTT-SEEEEHHHHHHHHT-TS--SSS-S-HHHHHH-----HHHHHHHHSSSEEEEE-T
T ss_pred CCCcEEeCCC--cCHHHHHHHHHcCCCEEEechHHHHHHc-CCC-CCCCCCHHHHHH-----HHHHHHhhhcCcEEEEcc
Confidence 4456666665 3444444566789877777543221111 111 001111100000 011111223579999883
Q ss_pred ---CCCHHHHHHHHHHHh-cCCCEEEEccC-CCccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEeccC--
Q psy4398 110 ---TADPERALEAAKKVE-HDVAAIDINMG-CPKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKIRVF-- 179 (306)
Q Consensus 110 ---g~~~~~~~~aa~~~~-~g~d~veln~g-cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~g-- 179 (306)
|+++....+..+.+. .|+.+|.|.=. |.+ -+..+. .++...+=|++++++. ++-|..+.-.-
T Consensus 78 ~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~-------~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~ 149 (238)
T PF13714_consen 78 TGYGNDPENVARTVRELERAGAAGINIEDQRCGH-------GGKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLR 149 (238)
T ss_dssp TTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTT-------STT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCH
T ss_pred cccCchhHHHHHHHHHHHHcCCcEEEeeccccCC-------CCCcee-CHHHHHHHHHHHHHhccCCeEEEEEecccccc
Confidence 455999999998776 49999999644 321 122333 4444444445554433 34455554431
Q ss_pred --CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 180 --HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 180 --~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
...+++++=++...++|+|.|-+++. .+.+.++++.++++.|+..+-+ ...-+.+++.+.|+
T Consensus 150 ~~~~~deaI~R~~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~~~Pl~v~~~-~~~~~~~eL~~lGv 213 (238)
T PF13714_consen 150 AEEGLDEAIERAKAYAEAGADMIFIPGL---------QSEEEIERIVKAVDGPLNVNPG-PGTLSAEELAELGV 213 (238)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEETTS---------SSHHHHHHHHHHHSSEEEEETT-SSSS-HHHHHHTTE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhcCCCEEEEcC-CCCCCHHHHHHCCC
Confidence 23466788888899999999998764 2456789999999999887764 22245556555543
|
... |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.15 Score=44.25 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=60.0
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
++..=+| +.+.++..++++.+.+.|+..|-++-++ |..++.++++++.++--+|+.|.|.|.++++++++.|
T Consensus 5 ~vv~Vir-~~~~~~a~~ia~al~~gGi~~iEit~~t-------p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG 76 (201)
T PRK06015 5 PVIPVLL-IDDVEHAVPLARALAAGGLPAIEITLRT-------PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG 76 (201)
T ss_pred CEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC
Confidence 4444455 2577889999999999999999998654 5577899999988865689999999999999999965
Q ss_pred h
Q psy4398 251 C 251 (306)
Q Consensus 251 v 251 (306)
+
T Consensus 77 A 77 (201)
T PRK06015 77 S 77 (201)
T ss_pred C
Confidence 4
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.21 Score=46.07 Aligned_cols=80 Identities=21% Similarity=0.104 Sum_probs=62.6
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
..|+.+.+-...+.+...+.++.+++.|++.|.++......... ..++.++++++.+++||+.- ++.+.++++.+.+
T Consensus 115 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~--~~~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~~ 191 (299)
T cd02809 115 PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR--LTWDDLAWLRSQWKGPLILK-GILTPEDALRAVD 191 (299)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--CCHHHHHHHHHhcCCCEEEe-ecCCHHHHHHHHH
Confidence 36888888754467778888999999999999987544322211 46899999999999999876 4788999999988
Q ss_pred hhh
Q psy4398 249 LNC 251 (306)
Q Consensus 249 ~~v 251 (306)
.|+
T Consensus 192 ~G~ 194 (299)
T cd02809 192 AGA 194 (299)
T ss_pred CCC
Confidence 865
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.58 Score=44.50 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=85.2
Q ss_pred HHHHHH-HHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEeccCCChHHHHH
Q psy4398 113 PERALE-AAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 113 ~~~~~~-aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~g~~~~~~~~ 187 (306)
+++.++ ..+++. .|.|.+-+= ..+||++-+..-++++++.= ...++--+++--+.+..++
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiF---------------DAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~ 160 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIF---------------DALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVE 160 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEec---------------hhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHH
Confidence 345444 344554 488888772 34678888888888887642 2233444443336778999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC---CHHHHHHHHHhhh-hhcccc
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK---EIVDYGGVFSLNC-AFLRNH 257 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~---s~~~~~~~l~~~v-~vGral 257 (306)
+++.+++.|+|.|.+-+.. +...+...+++++.+++.+++||...---+ +...+-.++++|+ .+-+|+
T Consensus 161 ~akel~~~g~DSIciKDma--GlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAi 232 (472)
T COG5016 161 LAKELLEMGVDSICIKDMA--GLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTAI 232 (472)
T ss_pred HHHHHHHcCCCEEEeeccc--ccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhhhhh
Confidence 9999999999999997653 223323468999999999999987654322 2455667777777 444443
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.17 Score=56.00 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=69.3
Q ss_pred cccCChHHHHHHHHHHHhcccccEEEEecc-C-C-C----------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--
Q psy4398 149 ALLSTPDIACNILTTLISNLSIPVSCKIRV-F-H-N----------EADTIALCKRLEACGIIAIGVHGRTKAERPRH-- 213 (306)
Q Consensus 149 ~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g-~-~----------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-- 213 (306)
.+++|.+...++++.... .+++|-.-+.. + . + ..+..+..+-+++.|+|.+-+.=.+..+.|.+
T Consensus 1204 ~~eeNi~~t~~vv~~Ah~-~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~ 1282 (1378)
T PLN02858 1204 SFTENISYTKSISSLAHS-KGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASG 1282 (1378)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCCC
Confidence 456677777888777654 36676666553 1 1 0 12344555555678999998755554455532
Q ss_pred -CCcHHHHHHHHhhC---CCcEEEecCCCC-HHHHHHHHHhhh
Q psy4398 214 -RNRIEMIRTLTQHL---KIPVIANGGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 214 -p~~~~~v~~i~~~~---~ipvia~GGI~s-~~~~~~~l~~~v 251 (306)
..+++.+++|++.+ ++|++..||-.. .++.+++++.|+
T Consensus 1283 p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi 1325 (1378)
T PLN02858 1283 PNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGV 1325 (1378)
T ss_pred CccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCC
Confidence 26899999999999 799999999664 456777777765
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.46 Score=42.55 Aligned_cols=131 Identities=16% Similarity=0.143 Sum_probs=88.0
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
|+...=+-.++.+..++.. .|+|+|-|.... -.++.+.++++... .++.-..|-+. +
T Consensus 104 PvL~KDFIid~~QI~ea~~---~GADavLLI~~~---------------L~~~~l~~l~~~a~-~lGle~LVEVh---~- 160 (247)
T PRK13957 104 PVLRKDFILDEIQIREARA---FGASAILLIVRI---------------LTPSQIKSFLKHAS-SLGMDVLVEVH---T- 160 (247)
T ss_pred CEEeccccCCHHHHHHHHH---cCCCEEEeEHhh---------------CCHHHHHHHHHHHH-HcCCceEEEEC---C-
Confidence 4444333344544443332 599999886432 13445666666654 36888888888 2
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh--hhhhccccC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL--NCAFLRNHY 258 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~--~v~vGrall 258 (306)
.+-++.+.++|++.|-|..|.....- .+++...++...+ +..+|+-+||.|++|+..+.+. ++-+|++++
T Consensus 161 ---~~El~~a~~~ga~iiGINnRdL~t~~---vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~~davLvG~~lm 234 (247)
T PRK13957 161 ---EDEAKLALDCGAEIIGINTRDLDTFQ---IHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKLVDAALIGTYFM 234 (247)
T ss_pred ---HHHHHHHHhCCCCEEEEeCCCCccce---ECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHhCCEEEECHHHh
Confidence 23344556689999999988755432 3566777777777 5778999999999999887654 569999999
Q ss_pred CCCC
Q psy4398 259 PVEK 262 (306)
Q Consensus 259 ~~p~ 262 (306)
+.+.
T Consensus 235 ~~~d 238 (247)
T PRK13957 235 EKKD 238 (247)
T ss_pred CCCC
Confidence 8664
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.8 Score=41.38 Aligned_cols=116 Identities=11% Similarity=0.141 Sum_probs=78.1
Q ss_pred eeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
+.+.+++.|.+++..++....-++ +.+-+|.+.| |+....+..++ +++. ..+.||
T Consensus 81 l~~~~~~~Gl~~~t~~~d~~~~~~------l~~~~d~lkI--------------~s~~~~n~~LL----~~~a-~~gkPV 135 (260)
T TIGR01361 81 LRRAADEHGLPVVTEVMDPRDVEI------VAEYADILQI--------------GARNMQNFELL----KEVG-KQGKPV 135 (260)
T ss_pred HHHHHHHhCCCEEEeeCChhhHHH------HHhhCCEEEE--------------CcccccCHHHH----HHHh-cCCCcE
Confidence 444555677788877754332221 1112567666 44555666654 4443 358999
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEE-cccCCC--CCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGV-HGRTKA--ERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v-~~~~~~--~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
.+|-....+.+++...++.+.+.|.+-|.+ |..+.. +......++..+..+++.+++||+.
T Consensus 136 ilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ 199 (260)
T TIGR01361 136 LLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIV 199 (260)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEE
Confidence 999998778999999999999999965554 643322 2223346899999999988999999
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.32 Score=42.59 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=64.1
Q ss_pred HHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC
Q psy4398 159 NILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK 238 (306)
Q Consensus 159 eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~ 238 (306)
++.+.+.+. ++..=+| +.+.++..++++.+.+.|++.|-++-+ .|..++.++++++.+.--+|+.|-|.
T Consensus 7 ~~~~~l~~~---~~iaV~r-~~~~~~a~~i~~al~~~Gi~~iEitl~-------~~~~~~~I~~l~~~~p~~~IGAGTVl 75 (212)
T PRK05718 7 SIEEILRAG---PVVPVIV-INKLEDAVPLAKALVAGGLPVLEVTLR-------TPAALEAIRLIAKEVPEALIGAGTVL 75 (212)
T ss_pred HHHHHHHHC---CEEEEEE-cCCHHHHHHHHHHHHHcCCCEEEEecC-------CccHHHHHHHHHHHCCCCEEEEeecc
Confidence 344555443 4444455 357889999999999999999999833 34567899999998865789999999
Q ss_pred CHHHHHHHHHhhh
Q psy4398 239 EIVDYGGVFSLNC 251 (306)
Q Consensus 239 s~~~~~~~l~~~v 251 (306)
+.++++.++++|+
T Consensus 76 ~~~~a~~a~~aGA 88 (212)
T PRK05718 76 NPEQLAQAIEAGA 88 (212)
T ss_pred CHHHHHHHHHcCC
Confidence 9999999999765
|
|
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.56 Score=44.45 Aligned_cols=125 Identities=14% Similarity=0.268 Sum_probs=84.5
Q ss_pred CceEEEecCCCHH-HHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc--cEEEEec
Q psy4398 102 NKIILQIGTADPE-RALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI--PVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~g~~~~-~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir 177 (306)
.|+-..+...+++ ...++.+..+ .||..+-+.+|- .+++.-.+.++++|+.++. .+.+-..
T Consensus 131 v~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~~~re~~g~~~~l~~DaN 195 (368)
T TIGR02534 131 VDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIGA---------------RDPADDVAHVVAIAKALGDRASVRVDVN 195 (368)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeCC---------------CCcHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 4555555555544 3444444444 599999986542 1234446677888888743 3333333
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+|+.+++.++++.+++.++.+|- ++. .+.+++..+++++.+++||.+.=.+.+..++.++++.
T Consensus 196 ~~~~~~~A~~~~~~l~~~~~~~iE-------eP~-~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~ 259 (368)
T TIGR02534 196 AAWDERTALHYLPQLADAGVELIE-------QPT-PAENREALARLTRRFNVPIMADESVTGPADALAIAKA 259 (368)
T ss_pred CCCCHHHHHHHHHHHHhcChhheE-------CCC-CcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh
Confidence 368899999999999998876552 222 2346788889999999999887778889888888775
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.075 Score=51.19 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHHHHHcCCcEEEEcccCC---CCCCCCCCcHHHHHHHHhhC---------CCcEEEecCCCCHHHHHHHHHhhh---hh
Q psy4398 189 CKRLEACGIIAIGVHGRTK---AERPRHRNRIEMIRTLTQHL---------KIPVIANGGSKEIVDYGGVFSLNC---AF 253 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~---~~~~~~p~~~~~v~~i~~~~---------~ipvia~GGI~s~~~~~~~l~~~v---~v 253 (306)
+..+++.|+|+|.+..... +.....|..++.++++++.+ ++||+|-||| +.+++.++++.|+ ++
T Consensus 313 l~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVAV 391 (437)
T PRK12290 313 LLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLAV 391 (437)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 4555678999999865432 22233456788887776654 6999999999 5899999998754 77
Q ss_pred ccccCCCC
Q psy4398 254 LRNHYPVE 261 (306)
Q Consensus 254 Grall~~p 261 (306)
=|+++..+
T Consensus 392 VSAI~~A~ 399 (437)
T PRK12290 392 VRAITLAE 399 (437)
T ss_pred ehHhhcCC
Confidence 77876533
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.42 Score=42.94 Aligned_cols=154 Identities=12% Similarity=0.080 Sum_probs=91.0
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
..++..+|...+...+.+-.+.+++ |+|.+-+.+- +|| .-+--++++++++ ..|+.|=
T Consensus 19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPN---------------itfGp~~i~~i~~--~~p~DvH 81 (254)
T PRK14057 19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQ---------------FTVGPWAVGQLPQ--TFIKDVH 81 (254)
T ss_pred CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCc---------------cccCHHHHHHhcc--CCCeeEE
Confidence 4578999999999999998888876 8888766532 344 1122334555544 4565555
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEccc-----------------------------------CC-------------
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGR-----------------------------------TK------------- 207 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~-----------------------------------~~------------- 207 (306)
+=. ++...+++.+.++|+|.|++|.- |+
T Consensus 82 LMV----~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~ 157 (254)
T PRK14057 82 LMV----ADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEV 157 (254)
T ss_pred eee----CCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCE
Confidence 442 12345556666667776666532 10
Q ss_pred ------CCCCCC----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCCchHH--H
Q psy4398 208 ------AERPRH----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEKLPKT--I 267 (306)
Q Consensus 208 ------~~~~~~----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~~~~~--~ 267 (306)
..++.+ +..++-++++++.. ++.|-.=|||+ .+++..+.++|+ .+|++++.++...+. .
T Consensus 158 VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~ 236 (254)
T PRK14057 158 IQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIAQGIDRVVSGSALFRDDRLVENTRS 236 (254)
T ss_pred EEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHH
Confidence 111111 11234445544432 35577779987 678888888876 889999975543221 4
Q ss_pred HHHHHHhcC
Q psy4398 268 LYAHCKYKR 276 (306)
Q Consensus 268 l~~~~~~~g 276 (306)
++..+...|
T Consensus 237 l~~~~~~~~ 245 (254)
T PRK14057 237 WRAMFKVAG 245 (254)
T ss_pred HHHHHhhcC
Confidence 444444444
|
|
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.28 Score=47.04 Aligned_cols=113 Identities=14% Similarity=0.168 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHH-h-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKV-E-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~-~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+.++.+ + .||..+-+..|- .+++.-.+.++++|+.++ +.+.+-...+|+.+++.++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 677777666654 3 499999997542 124444667888888773 3455554456899999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
++.+++ ++..+- ++. + +++..+++++.+++||.+.=-+.+.++++++++.+
T Consensus 233 ~~~l~~-~l~~iE-------eP~--~-d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~ 283 (395)
T cd03323 233 AKELEG-VLAYLE-------DPC--G-GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN 283 (395)
T ss_pred HHhcCc-CCCEEE-------CCC--C-CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC
Confidence 999998 776552 222 2 77888999999999988766677888888888753
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.11 Score=47.19 Aligned_cols=85 Identities=8% Similarity=0.039 Sum_probs=59.7
Q ss_pred HHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-----CC
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-----KI 229 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-----~i 229 (306)
+.+.++.+|+... .++.|-++ ..+-++.+.++|+|.|.+... +.+.++++.+.. ++
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~-------tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~ 230 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECE-------SLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHV 230 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeC-------CHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCe
Confidence 4677777777664 55777666 345555666799999987643 335555444431 45
Q ss_pred cEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 230 PVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 230 pvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+.++||| +++++.++.+.|+ .+|+....
T Consensus 231 ~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~s 262 (273)
T PRK05848 231 LLEASGNI-TLENINAYAKSGVDAISSGSLIHQ 262 (273)
T ss_pred EEEEECCC-CHHHHHHHHHcCCCEEEeChhhcC
Confidence 69999999 8999999999876 77776653
|
|
| >COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.25 Score=44.17 Aligned_cols=97 Identities=26% Similarity=0.417 Sum_probs=68.5
Q ss_pred CCCHHHH-HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC--------
Q psy4398 110 TADPERA-LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF-------- 179 (306)
Q Consensus 110 g~~~~~~-~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g-------- 179 (306)
+.++++. ..|++.+++ |+|+|-|. |+ ..+.+.++.+.+. ++||.-=+.+-
T Consensus 89 ~~s~~~a~~nA~r~~ke~gA~aVKlE-------------GG------~~~~~~i~~L~~~-gIPV~gHiGLtPQ~v~~~G 148 (268)
T COG0413 89 EVSPEQALKNAARLMKEAGADAVKLE-------------GG------EEMAETIKRLTER-GIPVMGHIGLTPQSVNWLG 148 (268)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEc-------------CC------HHHHHHHHHHHHc-CCceEEEecCChhhhhccC
Confidence 3356554 555566675 89999994 22 3456666776553 78988766651
Q ss_pred ------CCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 180 ------HNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 180 ------~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
-+. +...+-|+.++++|+-.+.+-+. | -++.++|-+.+++|+|+-|-
T Consensus 149 GykvqGr~~~~a~~l~~dA~ale~AGaf~ivlE~V--------p--~~lA~~IT~~lsiPtIGIGA 204 (268)
T COG0413 149 GYKVQGRTEESAEKLLEDAKALEEAGAFALVLECV--------P--AELAKEITEKLSIPTIGIGA 204 (268)
T ss_pred CeeeecCCHHHHHHHHHHHHHHHhcCceEEEEecc--------H--HHHHHHHHhcCCCCEEeecC
Confidence 122 23677889999999999998654 2 26889999999999998875
|
|
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.25 Score=47.00 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=68.0
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc--cE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI--PV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv 172 (306)
.+.|++..++ |-+++.+++.+..+.. |+|+|-..-+.-+ ..-..+.+|.+.+.+.++++.+.++. ++
T Consensus 128 ~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge------~~~~~~eER~~~v~~av~~a~~~TG~~~~y 201 (367)
T cd08205 128 HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLAD------QPYAPFEERVRACMEAVRRANEETGRKTLY 201 (367)
T ss_pred CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccC------cccCCHHHHHHHHHHHHHHHHHhhCCcceE
Confidence 4678888875 5678999999887754 8999855322111 11123456777888888888877643 34
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.+-++ .+.+++.+.++.++++|+|++.+..
T Consensus 202 ~~nit--~~~~e~i~~a~~a~~~Gad~vmv~~ 231 (367)
T cd08205 202 APNIT--GDPDELRRRADRAVEAGANALLINP 231 (367)
T ss_pred EEEcC--CCHHHHHHHHHHHHHcCCCEEEEec
Confidence 45554 4458899999999999999998743
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.34 Score=44.18 Aligned_cols=124 Identities=13% Similarity=0.023 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~Gst----------GE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i~ 87 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS-NSTREAIH 87 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccC----------cchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC-ccHHHHHH
Confidence 35667777777554 599999996443 1122222333344555444444 3688877763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia------~GGI~s~~~~~~~l~ 248 (306)
+++.++++|+|++.+....-. ......-.++.+.+.++. ||+. +|---+++.++++.+
T Consensus 88 ~a~~a~~~Gadav~~~~P~y~-~~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 88 ATEQGFAVGMHAALHINPYYG-KTSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIAQ 151 (280)
T ss_pred HHHHHHHcCCCEEEEcCCccC-CCCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHhc
Confidence 999999999999998754311 111111245566777654 7753 233335666655543
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.14 Score=44.22 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=56.3
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
++..=+|. .+.++..++++.+.+.|+..+-++-++ |..++.++++++.+.--+++.|.|.|.+++++++++|
T Consensus 9 ~iiaVir~-~~~~~a~~~~~al~~gGi~~iEiT~~t-------~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG 80 (196)
T PF01081_consen 9 KIIAVIRG-DDPEDAVPIAEALIEGGIRAIEITLRT-------PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG 80 (196)
T ss_dssp SEEEEETT-SSGGGHHHHHHHHHHTT--EEEEETTS-------TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEecCC-------ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC
Confidence 44545553 467889999999999999999998765 4577899999988866789999999999999999976
Q ss_pred h
Q psy4398 251 C 251 (306)
Q Consensus 251 v 251 (306)
+
T Consensus 81 A 81 (196)
T PF01081_consen 81 A 81 (196)
T ss_dssp -
T ss_pred C
Confidence 5
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.36 Score=42.59 Aligned_cols=82 Identities=11% Similarity=0.060 Sum_probs=60.7
Q ss_pred HHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CC--cEEEe
Q psy4398 159 NILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KI--PVIAN 234 (306)
Q Consensus 159 eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~i--pvia~ 234 (306)
++++.+.+. ++..=+|. .+.++..++++.+.+.|+..+-++-++ |..++.++++++.. .. -++++
T Consensus 7 ~~~~~l~~~---~vi~Vvr~-~~~~~a~~~~~al~~gGi~~iEiT~~t-------p~a~~~i~~l~~~~~~~~p~~~vGa 75 (222)
T PRK07114 7 AVLTAMKAT---GMVPVFYH-ADVEVAKKVIKACYDGGARVFEFTNRG-------DFAHEVFAELVKYAAKELPGMILGV 75 (222)
T ss_pred HHHHHHHhC---CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------CcHHHHHHHHHHHHHhhCCCeEEee
Confidence 344555443 44444552 567889999999999999999998654 45677888876544 22 38999
Q ss_pred cCCCCHHHHHHHHHhhh
Q psy4398 235 GGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v 251 (306)
|-|.|.++++++++.|+
T Consensus 76 GTVl~~e~a~~a~~aGA 92 (222)
T PRK07114 76 GSIVDAATAALYIQLGA 92 (222)
T ss_pred EeCcCHHHHHHHHHcCC
Confidence 99999999999998654
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.54 Score=44.00 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=67.8
Q ss_pred cccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc---EEEEcccCCCCCCCCCCcHHHHHHH
Q psy4398 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII---AIGVHGRTKAERPRHRNRIEMIRTL 223 (306)
Q Consensus 147 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d---~i~v~~~~~~~~~~~p~~~~~v~~i 223 (306)
|+.-+++..++.++. + .+.||.++... .+.+++...++.+.+.|.+ .+.+|+.+.........++..+..+
T Consensus 116 aS~~~~n~pLL~~~A----~-~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~L 189 (329)
T TIGR03569 116 PSGEITNAPLLKKIA----R-FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTL 189 (329)
T ss_pred CcccccCHHHHHHHH----h-cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHH
Confidence 344456666655543 3 58999999987 4788899999999999985 6667876543333345689999999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 224 TQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 224 ~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
++.+++||..++=-....-...++..|+
T Consensus 190 k~~f~~pVG~SdHt~G~~~~~aAvalGA 217 (329)
T TIGR03569 190 KEAFDLPVGYSDHTLGIEAPIAAVALGA 217 (329)
T ss_pred HHHhCCCEEECCCCccHHHHHHHHHcCC
Confidence 9999999988754333333333333343
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.63 Score=43.78 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=79.2
Q ss_pred CceEEEecCCCH-HHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 102 NKIILQIGTADP-ERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 102 ~p~ivql~g~~~-~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
.|+-..+...++ +++.+.++.+ ++||..+-+.++ | +.-.+.++++|+.++ .+++++
T Consensus 126 v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~-~-----------------~~d~~~l~~vr~~~g---~~~l~lD 184 (354)
T cd03317 126 IPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK-P-----------------GWDVEPLKAVRERFP---DIPLMAD 184 (354)
T ss_pred EEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC-h-----------------HHHHHHHHHHHHHCC---CCeEEEE
Confidence 355545543333 6666666655 459999998753 1 112455778887764 344444
Q ss_pred ---CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 179 ---FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 179 ---g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+|+.++. .+++.+++.++.+|- ++. .+.+++-.+++++.+++||.+-=.+.+++++.++++.
T Consensus 185 aN~~~~~~~a-~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~ 249 (354)
T cd03317 185 ANSAYTLADI-PLLKRLDEYGLLMIE-------QPL-AADDLIDHAELQKLLKTPICLDESIQSAEDARKAIEL 249 (354)
T ss_pred CCCCCCHHHH-HHHHHhhcCCccEEE-------CCC-ChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc
Confidence 5787776 478889888876663 222 2346778889999999999877678889998888875
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.39 Score=42.08 Aligned_cols=81 Identities=23% Similarity=0.215 Sum_probs=62.9
Q ss_pred HHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCC---cEEEecC
Q psy4398 160 ILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKI---PVIANGG 236 (306)
Q Consensus 160 iv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~i---pvia~GG 236 (306)
+++.+.+. ++..=+|. .+.++...+++.+.+.|+..+-++-++ |..++.++++++.++- -+++.|-
T Consensus 6 ~~~~l~~~---~vi~vir~-~~~~~a~~~~~al~~~Gi~~iEit~~~-------~~a~~~i~~l~~~~~~~p~~~vGaGT 74 (213)
T PRK06552 6 ILTKLKAN---GVVAVVRG-ESKEEALKISLAVIKGGIKAIEVTYTN-------PFASEVIKELVELYKDDPEVLIGAGT 74 (213)
T ss_pred HHHHHHHC---CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEECCC-------ccHHHHHHHHHHHcCCCCCeEEeeee
Confidence 34444443 45544553 467889999999999999999998654 4577899999988732 3899999
Q ss_pred CCCHHHHHHHHHhhh
Q psy4398 237 SKEIVDYGGVFSLNC 251 (306)
Q Consensus 237 I~s~~~~~~~l~~~v 251 (306)
|.|.++++.+++.|+
T Consensus 75 V~~~~~~~~a~~aGA 89 (213)
T PRK06552 75 VLDAVTARLAILAGA 89 (213)
T ss_pred CCCHHHHHHHHHcCC
Confidence 999999999999754
|
|
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.99 Score=41.75 Aligned_cols=148 Identities=9% Similarity=0.064 Sum_probs=94.5
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCC
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHN 181 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~ 181 (306)
....|...+++...+.+.. +.||..+-+..|- .+++.-.+.++++|+.++ ..+.+-...+|+
T Consensus 103 ~~~~l~~~~~~~~~~~~~~-~~Gf~~~KiKvG~---------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~ 166 (307)
T TIGR01927 103 YVALLPAGDPALLLLRSAK-AEGFRTFKWKVGV---------------GELAREGMLVNLLLEALPDKAELRLDANGGLS 166 (307)
T ss_pred ceeeccCCCHHHHHHHHHH-hCCCCEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCCeEEEeCCCCCC
Confidence 3444555667666554444 5599999886542 134444677888888774 233333333689
Q ss_pred hHHHHHHHHHHHH---cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccC
Q psy4398 182 EADTIALCKRLEA---CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHY 258 (306)
Q Consensus 182 ~~~~~~~a~~l~~---~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall 258 (306)
.+++.++++.+++ .++++|- ++. +.. +..+++++.+++||.+.=.+.+..++..+++.+.. ..+-
T Consensus 167 ~~~A~~~~~~l~~~~~~~i~~iE-------qP~--~~~-~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~--d~i~ 234 (307)
T TIGR01927 167 PDEAQQFLKALDPNLRGRIAFLE-------EPL--PDA-DEMSAFSEATGTAIALDESLWELPQLADEYGPGWR--GALV 234 (307)
T ss_pred HHHHHHHHHhcccccCCCceEEe-------CCC--CCH-HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCC--ceEE
Confidence 9999999999997 6676663 222 112 67788999999999887778889998888875330 0011
Q ss_pred CCC-Cc----hHHHHHHHHHhcCCCC
Q psy4398 259 PVE-KL----PKTILYAHCKYKRFEV 279 (306)
Q Consensus 259 ~~p-~~----~~~~l~~~~~~~g~~~ 279 (306)
-+| .+ .-..+.+....+|++.
T Consensus 235 ik~~~~GGi~~~~~i~~~a~~~gi~~ 260 (307)
T TIGR01927 235 IKPAIIGSPAKLRDLAQKAHRLGLQA 260 (307)
T ss_pred ECchhcCCHHHHHHHHHHHHHcCCCE
Confidence 122 11 1236667778888773
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.39 E-value=1 Score=39.32 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=86.0
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
.++++-+-..|...+. ++.+ ++|+|.+-+-+..| ...+.+.++..++ .+.-+.+-+-..|
T Consensus 57 ~~IvAD~Kt~D~G~~e--~~ma~~aGAd~~tV~g~A~----------------~~TI~~~i~~A~~-~~~~v~iDl~~~~ 117 (217)
T COG0269 57 KIIVADLKTADAGAIE--ARMAFEAGADWVTVLGAAD----------------DATIKKAIKVAKE-YGKEVQIDLIGVW 117 (217)
T ss_pred CeEEeeeeecchhHHH--HHHHHHcCCCEEEEEecCC----------------HHHHHHHHHHHHH-cCCeEEEEeecCC
Confidence 4566666555543332 2334 46999999843332 3344555555444 4555556555345
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHhh---hhhcc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK--IPVIANGGSKEIVDYGGVFSLN---CAFLR 255 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~--ipvia~GGI~s~~~~~~~l~~~---v~vGr 255 (306)
+ ..+-++.+++.|+|.+.+|-..-.+.....+.++.+..+++..+ ..|-..|||. ++++..+...+ +.+||
T Consensus 118 ~---~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~~~~~~ivIvGr 193 (217)
T COG0269 118 D---PEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFKGIGADIVIVGR 193 (217)
T ss_pred C---HHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCC-HHHHHHHhcCCCCEEEECc
Confidence 4 45666777779999999985432222111224677888888875 7898999986 88888888764 49999
Q ss_pred ccCC
Q psy4398 256 NHYP 259 (306)
Q Consensus 256 all~ 259 (306)
++-.
T Consensus 194 aIt~ 197 (217)
T COG0269 194 AITG 197 (217)
T ss_pred hhcC
Confidence 9864
|
|
| >TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.46 Score=44.69 Aligned_cols=141 Identities=11% Similarity=0.105 Sum_probs=88.0
Q ss_pred CCCCceEEEecCCC-H--HHHHHHHHHH----h-c---CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 99 REKNKIILQIGTAD-P--ERALEAAKKV----E-H---DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 99 ~~~~p~ivql~g~~-~--~~~~~aa~~~----~-~---g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
+...|+++.|-|.. . +...+|.+.- . . ||+-|.+..|. -.++++.+...++++....
T Consensus 97 ~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~-----------lpfeENI~~TrevVe~Ah~- 164 (357)
T TIGR01520 97 HYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSE-----------EPIEENIEICVKYLKRMAK- 164 (357)
T ss_pred HCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCC-----------CCHHHHHHHHHHHHHHHHH-
Confidence 35689999997664 3 2233343321 1 1 49999996442 2356777888888877543
Q ss_pred ccccEEEEecc-C-----------------CChHHHHHHHHHHH-HcCCcEEEEcccCCCCCCC-C--CCcHHHHHHH--
Q psy4398 168 LSIPVSCKIRV-F-----------------HNEADTIALCKRLE-ACGIIAIGVHGRTKAERPR-H--RNRIEMIRTL-- 223 (306)
Q Consensus 168 ~~~pv~vKir~-g-----------------~~~~~~~~~a~~l~-~~G~d~i~v~~~~~~~~~~-~--p~~~~~v~~i-- 223 (306)
.+++|-.-+.. | -++++..++++... ..|+|.+-+.=.+..+.|. + ..+++.+++|
T Consensus 165 ~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~ 244 (357)
T TIGR01520 165 IKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQE 244 (357)
T ss_pred cCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHH
Confidence 46666655543 1 02223333333321 1389999875555444552 2 3588999999
Q ss_pred --HhhCCCc------EEEecCCCCH-HHHHHHHHhhh
Q psy4398 224 --TQHLKIP------VIANGGSKEI-VDYGGVFSLNC 251 (306)
Q Consensus 224 --~~~~~ip------via~GGI~s~-~~~~~~l~~~v 251 (306)
++.+++| ++..||-... ++.+++++.|+
T Consensus 245 ~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI 281 (357)
T TIGR01520 245 YVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGV 281 (357)
T ss_pred HHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCC
Confidence 4666888 9999997765 77888888876
|
coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree. |
| >PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.26 Score=43.28 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=64.4
Q ss_pred EEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc---C--
Q psy4398 106 LQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV---F-- 179 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~---g-- 179 (306)
++|.+.+.+++.+-++.+.. |+|.|||-+- .+.. ...+.+.+.+..++..++.|+.+=+|. |
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD---------~l~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~ 69 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLD---------YLEN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGR 69 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGG---------GSTT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSS
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEec---------cccc---cChHHHHHHHHHHHHhCCCCEEEEecccccCCC
Confidence 67788899998877777766 9999999543 2221 456788889999988889999998886 2
Q ss_pred --CChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 180 --HNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 180 --~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.+.++-.++.+.+.+.|+|+|.|.-
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~ 96 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIEL 96 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEG
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 1345678899999999999999853
|
2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A .... |
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.4 Score=45.52 Aligned_cols=94 Identities=5% Similarity=-0.023 Sum_probs=69.1
Q ss_pred CCCceEEEec---CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhccc--cc
Q psy4398 100 EKNKIILQIG---TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IP 171 (306)
Q Consensus 100 ~~~p~ivql~---g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~p 171 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-- |++.+.. ..+.+|.+.+.+.+++..+.++ ++
T Consensus 124 ~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~--------~p~~eRv~~v~~av~~a~~eTG~~~~ 195 (364)
T cd08210 124 PERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPF--------APFEERVKACQEAVAEANAETGGRTL 195 (364)
T ss_pred CCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccC--------CCHHHHHHHHHHHHHHHHhhcCCcce
Confidence 4678888764 7789999999887765 8999833 2443221 2345677788888888887775 45
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
+.+-++ -+.++..+-++.++++|++++-+.
T Consensus 196 y~~Nit--a~~~em~~ra~~a~~~Ga~~vMv~ 225 (364)
T cd08210 196 YAPNVT--GPPTQLLERARFAKEAGAGGVLIA 225 (364)
T ss_pred EEEecC--CCHHHHHHHHHHHHHcCCCEEEee
Confidence 666666 456789999999999999999874
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.57 Score=45.66 Aligned_cols=143 Identities=13% Similarity=0.161 Sum_probs=92.3
Q ss_pred CHHHHHHHHHH-Hh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKK-VE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~-~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+-|+. .+ .||..+-+.+|.+. ++.-.+.++++|+.+ ++.+.+-...+|+.++++++
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~---------------~~~Di~~v~avRea~~d~~L~vDAN~~wt~~~Ai~~ 244 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVLR---------------GEEEIEAVTALAKRFPQARITLDPNGAWSLDEAIAL 244 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCC---------------hHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 56777655553 44 49999999765321 233356678888776 23344444446899999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCc----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCC--
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNR----IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVE-- 261 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~----~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p-- 261 (306)
++.+++. +..+ +++.. +.+ ++..+++++.+++||.+.=.+.+..+++++++.++ .+ +.-++
T Consensus 245 ~~~Le~~-~~~i-------EePv~-~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi---~~~d~~~ 312 (441)
T TIGR03247 245 CKDLKGV-LAYA-------EDPCG-AEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDI---PLADPHF 312 (441)
T ss_pred HHHhhhh-hceE-------eCCCC-cccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCE---EeccCCc
Confidence 9999986 5543 23322 234 78889999999999988666788888888887632 11 11122
Q ss_pred --CchHHHHHHHHHhcCCCCCc
Q psy4398 262 --KLPKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 262 --~~~~~~l~~~~~~~g~~~~~ 281 (306)
...-..+.+..+.+|+.+.+
T Consensus 313 gGIt~~~kIa~lA~a~Gi~v~~ 334 (441)
T TIGR03247 313 WTMQGSVRVAQMCHDWGLTWGS 334 (441)
T ss_pred chHHHHHHHHHHHHHcCCEEEE
Confidence 11123666777788877443
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.066 Score=46.81 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
..+..++|+.++++|+++|++..-.. ... ..++.++.+++.+++||+.-|+|.+.+.++.+.+.|+ .++...+
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~--~~~--g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPK--YFQ--GSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCcc--ccC--CCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 45689999999999999999864321 121 2557888888888999999999999999999988765 4555444
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.3 Score=40.39 Aligned_cols=93 Identities=11% Similarity=0.193 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhc-ccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC-----CCC-CcHHHHHHHHhhC
Q psy4398 155 DIACNILTTLISN-LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP-----RHR-NRIEMIRTLTQHL 227 (306)
Q Consensus 155 ~~~~eiv~~v~~~-~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~-----~~p-~~~~~v~~i~~~~ 227 (306)
+.+.+-++..++. .+.|+.+=+.. .+.++..+.++.++++|+|+|.++...+.... ..+ .-.+.++++++.+
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV 161 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc
Confidence 3333333444443 46888887763 46788999999999999999998654322111 111 1235678888888
Q ss_pred CCcEEEe-cCCCCHHHHHHHHH
Q psy4398 228 KIPVIAN-GGSKEIVDYGGVFS 248 (306)
Q Consensus 228 ~ipvia~-GGI~s~~~~~~~l~ 248 (306)
++||+.= +...+.++..++.+
T Consensus 162 ~~pv~vKl~~~~~~~~~~~~a~ 183 (289)
T cd02810 162 DIPLLVKLSPYFDLEDIVELAK 183 (289)
T ss_pred CCCEEEEeCCCCCHHHHHHHHH
Confidence 8998753 44445444444443
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.19 Score=45.16 Aligned_cols=138 Identities=15% Similarity=0.166 Sum_probs=62.2
Q ss_pred CCceEEEecCCCH-HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCC---hHHHHHHHHHHHhcccccEEEE
Q psy4398 101 KNKIILQIGTADP-ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLST---PDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 101 ~~p~ivql~g~~~-~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~---~~~~~eiv~~v~~~~~~pv~vK 175 (306)
+.|++.=+++.|| -++....+.+++ ||.+|. |+ |.--...+.+...|++. .+.=.|+++..++. +.. ++-
T Consensus 81 ~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~-gl~-T~~ 155 (268)
T PF09370_consen 81 DTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEK-GLF-TTA 155 (268)
T ss_dssp SS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHT-T-E-E--
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHC-CCe-eee
Confidence 4799999999988 345556667765 999985 44 43111111122222211 11223444444432 221 111
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---CCcH----HHHHHHHhh---C--CCcEEEecC-CCCHHH
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH---RNRI----EMIRTLTQH---L--KIPVIANGG-SKEIVD 242 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---p~~~----~~v~~i~~~---~--~ipvia~GG-I~s~~~ 242 (306)
.- .+ .+-|+.+.++|+|.|.+|-..-.+...+ ...+ +.+.++.++ + ++-+++.|| |.+++|
T Consensus 156 yv--f~----~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D 229 (268)
T PF09370_consen 156 YV--FN----EEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPED 229 (268)
T ss_dssp EE---S----HHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHH
T ss_pred ee--cC----HHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHH
Confidence 11 23 3445566689999999985432222211 1122 333444443 3 344555555 999999
Q ss_pred HHHHHHh
Q psy4398 243 YGGVFSL 249 (306)
Q Consensus 243 ~~~~l~~ 249 (306)
++.+++.
T Consensus 230 ~~~~l~~ 236 (268)
T PF09370_consen 230 AQYVLRN 236 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999985
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.9 Score=40.39 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=104.2
Q ss_pred cccccccccc--CCceEEccCCCCCCH--H--HHHH--HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCc
Q psy4398 20 ANANQANINY--SNKIILAPMVRMNTL--P--FRLL--ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l--~n~i~lAPm~~~t~~--~--~r~~--~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (306)
.++++|++.+ .||+.+=+|+...+. . ..++ ..+.||.++=.-.-..+.. ....
T Consensus 13 r~V~VG~v~iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a-~al~------------------ 73 (360)
T PRK00366 13 RQVKVGNVPIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAA-AALP------------------ 73 (360)
T ss_pred eEEEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHH-HhHH------------------
Confidence 4577888776 899999999953221 1 3332 2478988874432111111 0000
Q ss_pred eeeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+. .....|++.-| |.++ .-|.+.++.|+|.|-||=| ++ .+..+.+.+++++.++. ++|
T Consensus 74 ~I~---~~~~iPlvADI-HFd~---~lAl~a~~~G~~~iRINPG---------Ni----g~~~~~v~~vv~~ak~~-~ip 132 (360)
T PRK00366 74 EIK---KQLPVPLVADI-HFDY---RLALAAAEAGADALRINPG---------NI----GKRDERVREVVEAAKDY-GIP 132 (360)
T ss_pred HHH---HcCCCCEEEec-CCCH---HHHHHHHHhCCCEEEECCC---------CC----CchHHHHHHHHHHHHHC-CCC
Confidence 011 11247899888 4443 3344445569999999833 22 23477889999998875 778
Q ss_pred EEEEeccC------------CCh----HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE
Q psy4398 172 VSCKIRVF------------HNE----ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI 232 (306)
Q Consensus 172 v~vKir~g------------~~~----~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi 232 (306)
+-+.+..| ++. +.+.+.++.+++.|.+-|.++-...+- +..++..+.+++.++.|+-
T Consensus 133 IRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS~v----~~~i~ayrlla~~~dyPLH 205 (360)
T PRK00366 133 IRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKASDV----QDLIAAYRLLAKRCDYPLH 205 (360)
T ss_pred EEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCH----HHHHHHHHHHHhcCCCCce
Confidence 77766543 122 346788999999999999987653321 2245566777777787753
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=95.13 E-value=2.6 Score=38.70 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=105.0
Q ss_pred CCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhh-cccccccccCCCCCceeeecCCCCCCceEEEe
Q psy4398 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN-DLLNTIDFVDPLDGSVVFRTCPREKNKIILQI 108 (306)
Q Consensus 30 ~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql 108 (306)
++.++++|.+ -|.-=..++.+.|+..++|-....... .+ .++ ++++-.+... ...+.+...+.|+++-+
T Consensus 13 ~~~~~~~pg~--~D~lSAri~e~aGf~ai~~ss~~va~s-lG--~pD~g~l~~~e~~~-----~~~~I~~~~~lPv~aD~ 82 (290)
T TIGR02321 13 SGRLFTAMAA--HNPLVAKLAEQAGFGGIWGSGFELSAS-YA--VPDANILSMSTHLE-----MMRAIASTVSIPLIADI 82 (290)
T ss_pred CCCCEEeccc--cCHHHHHHHHHcCCCEEEECHHHHHHH-CC--CCCcccCCHHHHHH-----HHHHHHhccCCCEEEEC
Confidence 4567888877 333333445678998877764322111 11 111 1111100000 01112223467999987
Q ss_pred c---CCCHHHHHHHHHHHh-cCCCEEEEccC-CCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc----
Q psy4398 109 G---TADPERALEAAKKVE-HDVAAIDINMG-CPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV---- 178 (306)
Q Consensus 109 ~---g~~~~~~~~aa~~~~-~g~d~veln~g-cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~---- 178 (306)
- |+.+ +..+..+.+. .|+.+|.|.=. .|..+-.. .-|..-.-+++...+-|++++++- +.++.+=-|.
T Consensus 83 d~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~-~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~ 160 (290)
T TIGR02321 83 DTGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLR-TDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALI 160 (290)
T ss_pred CCCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccc-cCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence 3 4444 5777777665 49999999533 22210000 001111224444444455555433 4444444332
Q ss_pred -CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--CcEEEecC---CCCHHHHHHH
Q psy4398 179 -FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK--IPVIANGG---SKEIVDYGGV 246 (306)
Q Consensus 179 -g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~--ipvia~GG---I~s~~~~~~~ 246 (306)
+...+++++=+++..++|+|.|-+++.. .+.+.+.++.+.++ +|++.+.| ..+.++..++
T Consensus 161 ~~~g~deAI~Ra~aY~eAGAD~ifv~~~~--------~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~l 226 (290)
T TIGR02321 161 AGLGQQEAVRRGQAYEEAGADAILIHSRQ--------KTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAAL 226 (290)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecCCC--------CCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHh
Confidence 2245778888999999999999987521 24578888888885 58866533 3345555553
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.48 Score=44.90 Aligned_cols=117 Identities=19% Similarity=0.171 Sum_probs=78.1
Q ss_pred eeeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+.+.+++.|.+++..++.... ...++ +. +|.+.| |+..+.+..++ +++. ..+.|
T Consensus 173 ~L~~~~~~~Gl~~~t~v~d~~~--~~~l~---~~-vd~lkI--------------~s~~~~n~~LL----~~~a-~~gkP 227 (360)
T PRK12595 173 ILKQVADEYGLAVISEIVNPAD--VEVAL---DY-VDVIQI--------------GARNMQNFELL----KAAG-RVNKP 227 (360)
T ss_pred HHHHHHHHcCCCEEEeeCCHHH--HHHHH---Hh-CCeEEE--------------CcccccCHHHH----HHHH-ccCCc
Confidence 3445556678888877754322 22111 22 677766 44555665554 4443 35899
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEE-Ec-ccCCCCCC-CCCCcHHHHHHHHhhCCCcEEE
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGIIAIG-VH-GRTKAERP-RHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~d~i~-v~-~~~~~~~~-~~p~~~~~v~~i~~~~~ipvia 233 (306)
|.+|-....+.+++...++.+.+.|..-|. +| |.+.-..+ ....++..+..+++.+++||+.
T Consensus 228 Vilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~ 292 (360)
T PRK12595 228 VLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMV 292 (360)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEE
Confidence 999999777889999999999999985554 55 44322212 2335899999999999999998
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.24 Score=49.02 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=52.2
Q ss_pred HHHHHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh------hhhhccccCC
Q psy4398 189 CKRLEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL------NCAFLRNHYP 259 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~------~v~vGrall~ 259 (306)
+..+.+.|+|+|.+....... ....|..++.++++.+..++||++-|||+ .+++.++++. +++++++++.
T Consensus 403 ~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 403 AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGIS-ASNAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCC-HHHHHHHHHcCCCcCceEEEEeHHhc
Confidence 456667899999865432111 11235578999999988899999999996 8888888875 5578898874
|
|
| >cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.53 Score=44.21 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=88.5
Q ss_pred CCCCceEEEecCCCH------HHHHHHH----HHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 99 REKNKIILQIGTADP------ERALEAA----KKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 99 ~~~~p~ivql~g~~~------~~~~~aa----~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
+...|+++.|-|... +...+|. +++ ..||+-|.+..|. -.++++.+...++++....
T Consensus 85 ~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~-----------lp~eENI~~TkevVe~Ah~- 152 (345)
T cd00946 85 HYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSE-----------EPLEENIEICKKYLERMAK- 152 (345)
T ss_pred HCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCC-----------CCHHHHHHHHHHHHHHHHH-
Confidence 357899999976532 2222221 222 4599999997553 2356677888888877743
Q ss_pred ccccEEEEecc--C----------------CChHHHHHHHHHHHH-cCCcEEEEcccCCCCCCC-C--CCcHHHHHHH--
Q psy4398 168 LSIPVSCKIRV--F----------------HNEADTIALCKRLEA-CGIIAIGVHGRTKAERPR-H--RNRIEMIRTL-- 223 (306)
Q Consensus 168 ~~~pv~vKir~--g----------------~~~~~~~~~a~~l~~-~G~d~i~v~~~~~~~~~~-~--p~~~~~v~~i-- 223 (306)
.+++|-.-+.. | -+++++.++++.... .|+|.|-+.=.+..+.|. + ..+++.+++|
T Consensus 153 ~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~ 232 (345)
T cd00946 153 INMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQD 232 (345)
T ss_pred cCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHH
Confidence 46666665543 1 122334444433322 388999876555555554 1 2578999998
Q ss_pred --HhhC------CCcEEEecCCCC-HHHHHHHHHhhh
Q psy4398 224 --TQHL------KIPVIANGGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 224 --~~~~------~ipvia~GGI~s-~~~~~~~l~~~v 251 (306)
++.+ ++|++..||-.. .++.+++++.|+
T Consensus 233 ~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~GI 269 (345)
T cd00946 233 YVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYGV 269 (345)
T ss_pred HHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcCC
Confidence 5555 689999999765 467788888765
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=94.92 E-value=1 Score=42.03 Aligned_cols=82 Identities=9% Similarity=0.117 Sum_probs=60.0
Q ss_pred ccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCCcHHHHHHHHhh
Q psy4398 148 AALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI-IAIGVHGRTKAERPRHRNRIEMIRTLTQH 226 (306)
Q Consensus 148 ~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~-d~i~v~~~~~~~~~~~p~~~~~v~~i~~~ 226 (306)
+.-+++..++..+. + .+.||.+|... .+.+++...++.+.+.|. +.+.+|+.+.-+......++..+..+++.
T Consensus 118 S~~~~n~~LL~~va----~-~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~ 191 (327)
T TIGR03586 118 SFEITDLPLIRYVA----K-TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAER 191 (327)
T ss_pred CccccCHHHHHHHH----h-cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHH
Confidence 33445666655543 2 48999999887 478889999999999998 55667875433333334689999999999
Q ss_pred CCCcEEEec
Q psy4398 227 LKIPVIANG 235 (306)
Q Consensus 227 ~~ipvia~G 235 (306)
+++||..+.
T Consensus 192 f~~pVG~SD 200 (327)
T TIGR03586 192 FNVPVGLSD 200 (327)
T ss_pred hCCCEEeeC
Confidence 999996665
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.21 Score=45.58 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--CcEEEe
Q psy4398 157 ACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK--IPVIAN 234 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~--ipvia~ 234 (306)
+.+-++.+|+.++....+-++. . ..+-++.+.+.|+|+|.+. +...+.++++.+..+ +|+.+.
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv----~-tleea~~A~~~gaDyI~lD----------~~~~e~l~~~~~~~~~~i~i~Ai 238 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVET----E-TEEQVREAVAAGADIIMFD----------NRTPDEIREFVKLVPSAIVTEAS 238 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEe----C-CHHHHHHHHHcCCCEEEEC----------CCCHHHHHHHHHhcCCCceEEEE
Confidence 4566677777765333344442 1 2344555567999999883 134577788777664 778899
Q ss_pred cCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 235 GGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
||| +.+++.++.+.|+ ++|..-+
T Consensus 239 GGI-t~~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 239 GGI-TLENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred CCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 999 4999999998865 6666444
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.27 Score=42.79 Aligned_cols=73 Identities=26% Similarity=0.300 Sum_probs=60.6
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
|+..=+|. .+.++...+++.+.+.|++.|-|+-|+ |...+.++++++.+.--+|+.|=|-|+++++++.++|
T Consensus 14 ~vI~Vlr~-~~~e~a~~~a~Ali~gGi~~IEITl~s-------p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aG 85 (211)
T COG0800 14 PVVPVIRG-DDVEEALPLAKALIEGGIPAIEITLRT-------PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAG 85 (211)
T ss_pred CeeEEEEe-CCHHHHHHHHHHHHHcCCCeEEEecCC-------CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcC
Confidence 33333442 457899999999999999999997554 5678999999999987799999999999999999875
Q ss_pred h
Q psy4398 251 C 251 (306)
Q Consensus 251 v 251 (306)
.
T Consensus 86 a 86 (211)
T COG0800 86 A 86 (211)
T ss_pred C
Confidence 4
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.34 Score=50.48 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=48.6
Q ss_pred cCCcEEEEcccCCC---CCCCCCCcHHHHHHHHhhCC---CcEEEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 195 CGIIAIGVHGRTKA---ERPRHRNRIEMIRTLTQHLK---IPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 195 ~G~d~i~v~~~~~~---~~~~~p~~~~~v~~i~~~~~---ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
+|+|++.+...... .....+..++.++++++.++ +||++-||| +.+++.++++. |+++-++++..
T Consensus 127 ~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 127 ALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred CCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCC
Confidence 46999998764322 12223457889999998887 999999999 58999999887 45888887753
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.2 Score=46.85 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEE
Q psy4398 155 DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIA 233 (306)
Q Consensus 155 ~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia 233 (306)
+...+.++.+++. +.+-...+.+ ++..+.++.+.++|++.|.++.... .. +...++++++++.. ++||++
T Consensus 70 ~~~~~~i~~vk~~----l~v~~~~~~~-~~~~~~~~~l~eagv~~I~vd~~~G---~~-~~~~~~i~~ik~~~p~v~Vi~ 140 (325)
T cd00381 70 EEQAEEVRKVKGR----LLVGAAVGTR-EDDKERAEALVEAGVDVIVIDSAHG---HS-VYVIEMIKFIKKKYPNVDVIA 140 (325)
T ss_pred HHHHHHHHHhccC----ceEEEecCCC-hhHHHHHHHHHhcCCCEEEEECCCC---Cc-HHHHHHHHHHHHHCCCceEEE
Confidence 4445666666643 3333333333 4567788888889999998864321 11 22467889999887 488887
Q ss_pred ecCCCCHHHHHHHHHhhh
Q psy4398 234 NGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~v 251 (306)
|.+.|.++++++++.|+
T Consensus 141 -G~v~t~~~A~~l~~aGa 157 (325)
T cd00381 141 -GNVVTAEAARDLIDAGA 157 (325)
T ss_pred -CCCCCHHHHHHHHhcCC
Confidence 89999999999999865
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.6 Score=40.75 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=80.0
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc--cEEEEeccCC
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI--PVSCKIRVFH 180 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--pv~vKir~g~ 180 (306)
|+...+...++++..+.++.. .|+..+-+.++-+. .+++.-.+.++++++.++. .+.+-...+|
T Consensus 80 p~~~tv~~~~~e~~~~~~~~~-~G~~~~KvKVg~~~-------------~~~~~Di~rv~avRe~lGpd~~LrvDAN~~w 145 (327)
T PRK02901 80 PVNATVPAVDAAQVPEVLARF-PGCRTAKVKVAEPG-------------QTLADDVARVNAVRDALGPDGRVRVDANGGW 145 (327)
T ss_pred EeeEEeCCCCHHHHHHHHHHh-CCCCEEEEEECCCC-------------CCHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 444444444565544333322 48998888765221 2345556777888888753 3333333368
Q ss_pred ChHHHHHHHHHH-HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 181 NEADTIALCKRL-EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 181 ~~~~~~~~a~~l-~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+.+++.++++.+ ++.++.+|- ++. ..++-.+++++.+++||.+-=.+++..+...+++.
T Consensus 146 s~~~Ai~~~~~L~e~~~l~~iE-------qP~---~~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~ 205 (327)
T PRK02901 146 SVDEAVAAARALDADGPLEYVE-------QPC---ATVEELAELRRRVGVPIAADESIRRAEDPLRVARA 205 (327)
T ss_pred CHHHHHHHHHHhhhccCceEEe-------cCC---CCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHc
Confidence 999999999999 677777764 222 13677788888888998776667888888887764
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.71 Score=47.42 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=85.6
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.|+|+|-|-... + ..+.+.++++..++ ++.-+.|-+. + .+-++.+.++|++.|-|..
T Consensus 132 ~GADavLLI~~~--------------L-~~~~l~~l~~~a~~-lGme~LvEvh---~----~~el~~a~~~ga~iiGINn 188 (695)
T PRK13802 132 HGADLVLLIVAA--------------L-DDAQLKHLLDLAHE-LGMTVLVETH---T----REEIERAIAAGAKVIGINA 188 (695)
T ss_pred cCCCEeehhHhh--------------c-CHHHHHHHHHHHHH-cCCeEEEEeC---C----HHHHHHHHhCCCCEEEEeC
Confidence 388998885432 1 24566777766544 6888888888 2 2334455668999999998
Q ss_pred cCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCchHHHHHHH
Q psy4398 205 RTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPKTILYAH 271 (306)
Q Consensus 205 ~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~~~l~~~ 271 (306)
|.....- .+++...++.+.+ ++.+|+-+||.+++|+..+.+.| +.||.++++.|.. ...++++
T Consensus 189 RdL~tf~---vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp-~~~~~~l 256 (695)
T PRK13802 189 RNLKDLK---VDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDH-ELAVERL 256 (695)
T ss_pred CCCccce---eCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCH-HHHHHHH
Confidence 8755432 3667777887777 67889999999999999998875 4999999987653 3334444
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.28 Score=45.02 Aligned_cols=88 Identities=9% Similarity=0.118 Sum_probs=54.9
Q ss_pred HHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHH-HHHHHHh-hCCCcEE
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIE-MIRTLTQ-HLKIPVI 232 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~-~v~~i~~-~~~ipvi 232 (306)
+.+.++.+|+.++ .+|.|-+. ..+-+..+.++|+|+|-+.... |..+. .+..+++ .-++|+.
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~-------tleea~eA~~~GaD~I~LDn~~-------~e~l~~av~~~~~~~~~i~le 247 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETE-------TLEQVQEALEYGADIIMLDNMP-------VDLMQQAVQLIRQQNPRVKIE 247 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECC-------CHHHHHHHHHcCCCEEEECCCC-------HHHHHHHHHHHHhcCCCeEEE
Confidence 4566777777664 23333333 2333444557999999987332 22222 2222322 2378999
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
++|||+ .+++.++.+.|+ ++|+....
T Consensus 248 AsGGIt-~~ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 248 ASGNIT-LETIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred EECCCC-HHHHHHHHHcCCCEEEEchhhhC
Confidence 999995 999999988866 88877664
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.6 Score=46.11 Aligned_cols=128 Identities=9% Similarity=0.033 Sum_probs=70.6
Q ss_pred eEEEecCC-CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 104 IILQIGTA-DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 104 ~ivql~g~-~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
++.-|... ..+...+-|+ .+++|+|.|+||+++..+ .++.+..+++++++.++.||++-.. +
T Consensus 154 v~aEI~~a~~l~~i~~~A~~~~~~GADIIDIG~~st~p-------------~~~~v~~~V~~l~~~~~~pISIDT~---~ 217 (499)
T TIGR00284 154 VVAEIPPTVAEDGIEGLAARMERDGADMVALGTGSFDD-------------DPDVVKEKVKTALDALDSPVIADTP---T 217 (499)
T ss_pred EEEEEcCCcchHHHHHHHHHHHHCCCCEEEECCCcCCC-------------cHHHHHHHHHHHHhhCCCcEEEeCC---C
Confidence 45555432 2344444444 456799999999876432 2446888899998877888877655 2
Q ss_pred hHHHHHHHHHHHHcCCcEEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC--CCCHHHHHHHHHhhhhhcc-cc
Q psy4398 182 EADTIALCKRLEACGIIAIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG--SKEIVDYGGVFSLNCAFLR-NH 257 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG--I~s~~~~~~~l~~~v~vGr-al 257 (306)
.+.++...++|+|.|. +++ .+++.+..+.+..+.|+|..=. -.+.+.+++.++.....|- .+
T Consensus 218 ----~~v~eaAL~aGAdiINsVs~----------~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~I 283 (499)
T TIGR00284 218 ----LDELYEALKAGASGVIMPDV----------ENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKV 283 (499)
T ss_pred ----HHHHHHHHHcCCCEEEECCc----------cchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcE
Confidence 3444555556888776 111 1222333444445666555432 1112334444443333333 45
Q ss_pred CCCC
Q psy4398 258 YPVE 261 (306)
Q Consensus 258 l~~p 261 (306)
+.||
T Consensus 284 IlDP 287 (499)
T TIGR00284 284 AADP 287 (499)
T ss_pred EEeC
Confidence 6677
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=1.3 Score=41.21 Aligned_cols=139 Identities=10% Similarity=0.133 Sum_probs=90.6
Q ss_pred HHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHH
Q psy4398 114 ERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 114 ~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~ 190 (306)
++..+.++.. +.||..+-+.+|- .+++.-.+.++++|+.++ ..+.+-...+|+.+++.++++
T Consensus 120 ~~~~~~a~~~~~~G~~~~KvKvG~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~ 184 (320)
T PRK02714 120 EAALQQWQTLWQQGYRTFKWKIGV---------------DPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQ 184 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECC---------------CChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4555444444 5699999886542 123444567788888774 445555555789999999999
Q ss_pred HHHH---cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCC-CchH
Q psy4398 191 RLEA---CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVE-KLPK 265 (306)
Q Consensus 191 ~l~~---~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p-~~~~ 265 (306)
.+++ .++.+|- ++. .+.+++-.+++++.+++||.+-=.+.+..++..+++.+. .+ +--+| ...-
T Consensus 185 ~l~~l~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~---v~ik~~k~GG 253 (320)
T PRK02714 185 LCDRRLSGKIEFIE-------QPL-PPDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGI---FVIKPAIAGS 253 (320)
T ss_pred HHhhccCCCccEEE-------CCC-CcccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCE---EEEcchhcCC
Confidence 9988 4665553 222 234788889999999999988878889999998887532 10 11122 1111
Q ss_pred H-HHHHHHHhcCCC
Q psy4398 266 T-ILYAHCKYKRFE 278 (306)
Q Consensus 266 ~-~l~~~~~~~g~~ 278 (306)
+ .+.++.+..|++
T Consensus 254 i~~~~~~a~~~gi~ 267 (320)
T PRK02714 254 PSRLRQFCQQHPLD 267 (320)
T ss_pred HHHHHHHHHHhCCC
Confidence 1 455667777877
|
|
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.36 Score=46.33 Aligned_cols=136 Identities=10% Similarity=0.056 Sum_probs=89.5
Q ss_pred cCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEE
Q psy4398 125 HDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIG 201 (306)
Q Consensus 125 ~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~ 201 (306)
.||.++-+.++. |. .| ...++.-.+.++++|++++ +.+.+-...+|+.+++.++++.+++.++..+-
T Consensus 171 ~Gf~~~Kik~~~g~~-------~g---~~~~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wiE 240 (394)
T PRK15440 171 MGFIGGKMPLHHGPA-------DG---DAGLRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWIE 240 (394)
T ss_pred CCCCEEEEcCCcCcc-------cc---hHHHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCccee
Confidence 488888887531 21 01 0124555678888888884 56666666679999999999999999887773
Q ss_pred EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC--CCCHHHHHHHHHhhhhhccccCCCCCc-------hHHHHHHHH
Q psy4398 202 VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG--SKEIVDYGGVFSLNCAFLRNHYPVEKL-------PKTILYAHC 272 (306)
Q Consensus 202 v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG--I~s~~~~~~~l~~~v~vGrall~~p~~-------~~~~l~~~~ 272 (306)
++. .+.+++-.+++++.+++||...+| +.+..+++.+++.+. .-+-+|.. .-+.+.+..
T Consensus 241 -------EPl-~~~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a----~Divq~d~~~~GGit~~~kia~lA 308 (394)
T PRK15440 241 -------ECL-PPDDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGC----IDIIQPDVGWCGGLTELVKIAALA 308 (394)
T ss_pred -------CCC-CcccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCC----CCEEeCCccccCCHHHHHHHHHHH
Confidence 222 345788889999998766555444 567888888887532 11222211 122666777
Q ss_pred HhcCCCCCcc
Q psy4398 273 KYKRFEVPKY 282 (306)
Q Consensus 273 ~~~g~~~~~~ 282 (306)
+.+|++...+
T Consensus 309 ~a~gi~~~pH 318 (394)
T PRK15440 309 KARGQLVVPH 318 (394)
T ss_pred HHcCCeeccc
Confidence 8888775443
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.037 Score=48.90 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccc
Q psy4398 181 NEADTIALCKRLEA-CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRN 256 (306)
Q Consensus 181 ~~~~~~~~a~~l~~-~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGra 256 (306)
+.++....+...++ .|...+-+-..+. .+. +..-++++..++..++|+|..|||+|.++++++.++|+ .+|.+
T Consensus 137 ~~~~iaa~~alA~~~~g~~~iYLEaGSG--a~~-~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~ 213 (230)
T PF01884_consen 137 DKPEIAAAAALAAEYLGMPIIYLEAGSG--AYG-PVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNA 213 (230)
T ss_dssp SHHHHHHHHHHHHHHTT-SEEEEE--TT--SSS--HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCH
T ss_pred CcHHHHHHHHHHHHHhCCCEEEEEeCCC--CCC-CccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCE
Confidence 44455444444444 5888887754322 222 22234445555555999999999999999999999865 99999
Q ss_pred cCCCCC
Q psy4398 257 HYPVEK 262 (306)
Q Consensus 257 ll~~p~ 262 (306)
++.|+.
T Consensus 214 iee~~~ 219 (230)
T PF01884_consen 214 IEEDPD 219 (230)
T ss_dssp HHHHH-
T ss_pred EEEcch
Confidence 988764
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.3 Score=41.27 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=92.1
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccC
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVF 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g 179 (306)
.|+-.++...+++++.+.++.. +.||..+-+..+ |. .+ .+.++++|+.++ +.+.+-...+
T Consensus 122 i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~~-------------~d----~~~v~~vr~~~~~~~l~vDaN~~ 183 (324)
T TIGR01928 122 APAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT-PQ-------------IM----HQLVKLRRLRFPQIPLVIDANES 183 (324)
T ss_pred EEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC-Cc-------------hh----HHHHHHHHHhCCCCcEEEECCCC
Confidence 3444445556777776666654 459999998753 10 12 356777887762 2233333335
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccC
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHY 258 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall 258 (306)
|+.++. ..++.+++.++.++- ++. .+.+++-.+++++.+++||.+.=.+.+..++..+++.+. -+ +-
T Consensus 184 ~~~~~a-~~~~~l~~~~~~~iE-------eP~-~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dv---i~ 251 (324)
T TIGR01928 184 YDLQDF-PRLKELDRYQLLYIE-------EPF-KIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKV---IN 251 (324)
T ss_pred CCHHHH-HHHHHHhhCCCcEEE-------CCC-ChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCE---EE
Confidence 777664 568999998877764 222 234678889999999999988777888999888877532 10 00
Q ss_pred CCC-C----chHHHHHHHHHhcCCCC
Q psy4398 259 PVE-K----LPKTILYAHCKYKRFEV 279 (306)
Q Consensus 259 ~~p-~----~~~~~l~~~~~~~g~~~ 279 (306)
-++ . ..-..+.+..++.|+++
T Consensus 252 ~d~~~~GGit~~~~~~~~A~~~gi~~ 277 (324)
T TIGR01928 252 IKPGRLGGLTEVQKAIETCREHGAKV 277 (324)
T ss_pred eCcchhcCHHHHHHHHHHHHHcCCeE
Confidence 122 1 11125566677778773
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.44 Score=44.64 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=64.6
Q ss_pred cccCChHHHHHHHHHHHh-cccccEEEEeccCCCh-HHHHHHHHHHHHcCCcEEEEcccCCC--CCCCCCCcH----HHH
Q psy4398 149 ALLSTPDIACNILTTLIS-NLSIPVSCKIRVFHNE-ADTIALCKRLEACGIIAIGVHGRTKA--ERPRHRNRI----EMI 220 (306)
Q Consensus 149 ~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~g~~~-~~~~~~a~~l~~~G~d~i~v~~~~~~--~~~~~p~~~----~~v 220 (306)
....+++...+. +.+|+ ..+.|+.+-+...... .+..++.+..+..++|++.+|-.... ..+.+..++ +.+
T Consensus 93 ~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i 171 (333)
T TIGR02151 93 AALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKI 171 (333)
T ss_pred hhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHH
Confidence 345678866666 77777 5689999877642111 11444555555567778777643211 112222233 678
Q ss_pred HHHHhhCCCcEEE--ecCCCCHHHHHHHHHhhh
Q psy4398 221 RTLTQHLKIPVIA--NGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 221 ~~i~~~~~ipvia--~GGI~s~~~~~~~l~~~v 251 (306)
+.+++.+++||+. +|.-.+.+.++.+.+.|+
T Consensus 172 ~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGv 204 (333)
T TIGR02151 172 AEICSQLSVPVIVKEVGFGISKEVAKLLADAGV 204 (333)
T ss_pred HHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCC
Confidence 9999999999997 455578888888888765
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=94.56 E-value=3.2 Score=38.68 Aligned_cols=167 Identities=13% Similarity=0.134 Sum_probs=103.4
Q ss_pred ccccccccc--CCceEEccCCCCCC--HH--HHHH--HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCce
Q psy4398 21 NANQANINY--SNKIILAPMVRMNT--LP--FRLL--ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 21 ~~~~~~l~l--~n~i~lAPm~~~t~--~~--~r~~--~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
++++|++.+ .||+..=+|+...+ .. .+++ ..+.||.++=.-.-..+.. ....
T Consensus 6 ~V~VG~v~IGG~~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A-~al~------------------- 65 (346)
T TIGR00612 6 SVRVGAVPVGGDAPIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESA-AAFE------------------- 65 (346)
T ss_pred EEEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHH-HhHH-------------------
Confidence 355677665 79999999994322 11 3332 2478988874432111110 0000
Q ss_pred eeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
...+....|++.-|.-. +..|+..++.|+|.|-||=| ++|. .+.+.+++++.++. ++|+
T Consensus 66 --~I~~~~~iPlVADIHFd----~~lAl~a~~~g~dkiRINPG---------Nig~-----~e~v~~vv~~ak~~-~ipI 124 (346)
T TIGR00612 66 --AIKEGTNVPLVADIHFD----YRLAALAMAKGVAKVRINPG---------NIGF-----RERVRDVVEKARDH-GKAM 124 (346)
T ss_pred --HHHhCCCCCEEEeeCCC----cHHHHHHHHhccCeEEECCC---------CCCC-----HHHHHHHHHHHHHC-CCCE
Confidence 00112357899888433 45566666779999999833 3442 67888899888775 7787
Q ss_pred EEEeccC------------CCh----HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE
Q psy4398 173 SCKIRVF------------HNE----ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI 232 (306)
Q Consensus 173 ~vKir~g------------~~~----~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi 232 (306)
-+.+..| ++. +.+.+.++.|++.|.+-|.++-...+- +..++..+.+++.++.|+-
T Consensus 125 RIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsSdv----~~~i~ayr~la~~~dyPLH 196 (346)
T TIGR00612 125 RIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKASDV----AETVAAYRLLAERSDYPLH 196 (346)
T ss_pred EEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCH----HHHHHHHHHHHhhCCCCce
Confidence 7766643 222 346788999999999999987643321 2245556777777777753
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.33 Score=44.03 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEE
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVI 232 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvi 232 (306)
..+-++.+|+.++ .++-+-+. ..+-++.+.+.|+|+|.+... ..+.++++.+.+ .+|+.
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~-------t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~ 226 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVE-------SLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLE 226 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeC-------CHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEE
Confidence 3445677777664 33333333 234456667899999998542 335666666655 38999
Q ss_pred EecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
+.|||+ .+++.++.+.|+ ++|.
T Consensus 227 AsGGI~-~~ni~~~a~~Gvd~Isvga 251 (265)
T TIGR00078 227 ASGGIT-LDNLEEYAETGVDVISSGA 251 (265)
T ss_pred EECCCC-HHHHHHHHHcCCCEEEeCH
Confidence 999995 899999998865 6643
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PRK02412 aroD 3-dehydroquinate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.7 Score=38.99 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=65.9
Q ss_pred ceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc--
Q psy4398 103 KIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV-- 178 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~-- 178 (306)
.+++.|.+.+.+++.+.++.+. .++|.||+ |-|-+.. ..+.+.+.+++..+++.. ++|+++=+|.
T Consensus 17 ~i~v~l~~~~~~e~~~~~~~~~~~~aD~vEl---------RlD~l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~ 85 (253)
T PRK02412 17 KIIVPIMGKTLEEVLAEALAISKYDADIIEW---------RADFLEK--ISDVESVLAAAPAIREKFAGKPLLFTFRTAK 85 (253)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhhcCCCEEEE---------Eechhhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 4778899999999888777665 59999999 4343321 134566777788887765 6899998886
Q ss_pred --C---CChHHHHHHHHHHHHcC-CcEEEEc
Q psy4398 179 --F---HNEADTIALCKRLEACG-IIAIGVH 203 (306)
Q Consensus 179 --g---~~~~~~~~~a~~l~~~G-~d~i~v~ 203 (306)
| .+.++-.++.+.+.+.| +|+|.+.
T Consensus 86 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiE 116 (253)
T PRK02412 86 EGGEIALSDEEYLALIKAVIKSGLPDYIDVE 116 (253)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 1 23455677778888888 8999985
|
|
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.8 Score=42.70 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=108.8
Q ss_pred ccccccccccCCceEEccCCCCCC-HHHHHHHHHcCC------CEEEecceechhhhhhhhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNT-LPFRLLALDYGA------DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~-~~~r~~~~~~G~------g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
+.+++.-++-..||++|-|+..|- ..+...+.++|. |.-+||-+ +.....+..++ +.||
T Consensus 24 v~TkfsrLtGr~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~----~~~~i~ql~~~------lepG---- 89 (717)
T COG4981 24 VSTKFSRLTGRSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEI----FTNAIEQLVSL------LEPG---- 89 (717)
T ss_pred EeechhhhcCCCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHH----HHHHHHHHHhc------cCCC----
Confidence 567888888899999999996554 446665556551 33344322 21111111111 1121
Q ss_pred eeecCCCCCCceEEEecCCCHHHH------HHHHHHHhc-C--CCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 93 VFRTCPREKNKIILQIGTADPERA------LEAAKKVEH-D--VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~~~~~------~~aa~~~~~-g--~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
.-.-+|..--+|--| ....+.+.+ | .|+|-|..|.|. .+...|+|+.
T Consensus 90 ---------~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~---------------le~A~ElI~~ 145 (717)
T COG4981 90 ---------RTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPS---------------LEEAVELIEE 145 (717)
T ss_pred ---------ccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCc---------------HHHHHHHHHH
Confidence 111122111121110 112233433 5 589999888876 3556677766
Q ss_pred HHhcccccEE-EEeccCCChHHHHHHHHHHHHcCCcEEE--EcccCCCCCCC----CCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 164 LISNLSIPVS-CKIRVFHNEADTIALCKRLEACGIIAIG--VHGRTKAERPR----HRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 164 v~~~~~~pv~-vKir~g~~~~~~~~~a~~l~~~G~d~i~--v~~~~~~~~~~----~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
+-. .++|-. .|-. +.+......+.+.+..---|+ +.+....+..+ ...-+....+++.+-+|-+|..||
T Consensus 146 L~~-~G~~yv~fKPG---tIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGgG 221 (717)
T COG4981 146 LGD-DGFPYVAFKPG---TIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGG 221 (717)
T ss_pred Hhh-cCceeEEecCC---cHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEEecCC
Confidence 633 356633 3322 444455555555555433344 44443333222 112345567888888999999999
Q ss_pred CCCHHHHHHHHH------h--------hhhhccccCC
Q psy4398 237 SKEIVDYGGVFS------L--------NCAFLRNHYP 259 (306)
Q Consensus 237 I~s~~~~~~~l~------~--------~v~vGrall~ 259 (306)
|.+++++...+. + |+.+|++.+.
T Consensus 222 iGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMa 258 (717)
T COG4981 222 IGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMA 258 (717)
T ss_pred cCChhhcccccccchhhhcCCCCCCcceeEechhHHh
Confidence 999999987774 1 4478887765
|
|
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.16 Score=43.57 Aligned_cols=93 Identities=12% Similarity=0.027 Sum_probs=68.7
Q ss_pred ccccEEEEecc--CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 168 LSIPVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 168 ~~~pv~vKir~--g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
+...+.+|-.. +++.++..+..+.+....--.+++-+...-+..++| +.+.+..+.+....||+..|||.-.|+.+-
T Consensus 120 ~vvslD~k~~~Ll~~~~ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~G~-~~E~l~~~~~~s~~pVllGGGV~g~Edlel 198 (229)
T COG1411 120 IVVSLDVKGGELLGPWLEDFLETVKDLNYRRDPGLIVLDIGAVGTKSGP-DYELLTKVLELSEHPVLLGGGVGGMEDLEL 198 (229)
T ss_pred eEEEEecCCCeecCCCchhHHHHHHHHhccCCCCeEEEEccccccccCC-CHHHHHHHHHhccCceeecCCcCcHHHHHH
Confidence 45667777553 455788888888877654444444333334445555 889999999998999999999999999998
Q ss_pred HHHhhh---hhccccCCCC
Q psy4398 246 VFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 246 ~l~~~v---~vGrall~~p 261 (306)
....|+ .+|||++.+-
T Consensus 199 ~~~~Gv~gvLvaTalh~G~ 217 (229)
T COG1411 199 LLGMGVSGVLVATALHEGV 217 (229)
T ss_pred HhcCCCceeeehhhhhcCc
Confidence 887754 9999999764
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.79 Score=43.20 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=78.2
Q ss_pred ecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEE
Q psy4398 95 RTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC 174 (306)
Q Consensus 95 ~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v 174 (306)
+...+.|.+++-.++... +...+++ .+|.+.| |+..+++..++ +++. ..+.||.+
T Consensus 159 ~~~~e~Gl~~~tev~d~~--~v~~~~~----~~d~lqI--------------ga~~~~n~~LL----~~va-~t~kPVll 213 (352)
T PRK13396 159 AAREATGLGIITEVMDAA--DLEKIAE----VADVIQV--------------GARNMQNFSLL----KKVG-AQDKPVLL 213 (352)
T ss_pred HHHHHcCCcEEEeeCCHH--HHHHHHh----hCCeEEE--------------CcccccCHHHH----HHHH-ccCCeEEE
Confidence 334456777777764332 2222222 3688877 45556676654 4443 35899999
Q ss_pred EeccCCChHHHHHHHHHHHHcCCcEEE-EcccC--CCCCC-CCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 175 KIRVFHNEADTIALCKRLEACGIIAIG-VHGRT--KAERP-RHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 175 Kir~g~~~~~~~~~a~~l~~~G~d~i~-v~~~~--~~~~~-~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
|-....+.+++...++.+.+.|..-|. ++... -...| ....+|..+..+++.+++|||..
T Consensus 214 k~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~D 277 (352)
T PRK13396 214 KRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMID 277 (352)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEEC
Confidence 999888899999999999999986555 45533 22122 24568999999999999999776
|
|
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.62 Score=42.24 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=76.7
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.+.|.|++--+. ++.+... +.+.+|.++| |+.++++.++ ++++.+ ++.||.+|-.
T Consensus 84 ~~~GlpvvTeV~--~~~~~~~----~ae~vDilQI--------------gAr~~rntdL----L~a~~~-t~kpV~lKrG 138 (281)
T PRK12457 84 ARFGVPVITDVH--EVEQAAP----VAEVADVLQV--------------PAFLARQTDL----VVAIAK-TGKPVNIKKP 138 (281)
T ss_pred HHHCCceEEEeC--CHHHHHH----HhhhCeEEee--------------CchhhchHHH----HHHHhc-cCCeEEecCC
Confidence 346777776662 2323332 2335888888 4555666554 444433 5899999998
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCC-CCCcHHHHHHHHhh-CCCcEEE
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR-HRNRIEMIRTLTQH-LKIPVIA 233 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~-~p~~~~~v~~i~~~-~~ipvia 233 (306)
.+.+++++...++.+.+.|...|.+.-|-..-.|. ...++..+..+++. .++|||.
T Consensus 139 qf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~t~lPVi~ 196 (281)
T PRK12457 139 QFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTTGDLPVIF 196 (281)
T ss_pred CcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhCCCCCEEE
Confidence 77788899999999999999999886554332333 24577788888886 5899986
|
|
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.33 Score=44.12 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=56.6
Q ss_pred HHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEE
Q psy4398 158 CNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIA 233 (306)
Q Consensus 158 ~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia 233 (306)
.+-++.+|+.++ .++.|-+. + .+-++.+.++|+|+|.+... ..+.++++.+.. ++|+.+
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev~---s----~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~A 231 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEVE---T----LEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEA 231 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEEC---C----HHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEE
Confidence 345667777664 23333333 2 34455556799999998643 346777777666 599999
Q ss_pred ecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 234 NGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.|||+ .+++.++.+.|+ ++|+...
T Consensus 232 iGGI~-~~ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 232 SGGIT-LENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred ECCCC-HHHHHHHHHcCCCEEEEEeeec
Confidence 99995 899999998765 7776544
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=3.1 Score=36.23 Aligned_cols=108 Identities=11% Similarity=0.153 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHH
Q psy4398 110 TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~ 187 (306)
..++++..+ .++. +.|.|+||-. .++++ ++.+++.. ..+++--++. +.. ...
T Consensus 61 ~~~~~~i~~---~~~~~~~d~vQLHG~----------------e~~~~----~~~l~~~~~~~~iika~~~--~~~-~~~ 114 (207)
T PRK13958 61 NPDLTTIEH---ILSNTSINTIQLHGT----------------ESIDF----IQEIKKKYSSIKIIKALPA--DEN-IIQ 114 (207)
T ss_pred CCCHHHHHH---HHHhCCCCEEEECCC----------------CCHHH----HHHHhhcCCCceEEEEecc--cHH-HHH
Confidence 345555554 4443 7899999822 12333 44555433 3555555553 222 223
Q ss_pred HHHHHHHcCCcEEEEcccCCC-CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKA-ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~-~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
.++.... .+|++.+...... ++.....+|+.++.+ ...|++..||++ +++..++++
T Consensus 115 ~~~~~~~-~~d~~LlDs~~~~~GGtG~~~dw~~~~~~---~~~p~iLAGGL~-peNV~~a~~ 171 (207)
T PRK13958 115 NINKYKG-FVDLFIIDTPSVSYGGTGQTYDWTILKHI---KDIPYLIAGGIN-SENIQTVEQ 171 (207)
T ss_pred HHHHHHh-hCCEEEEcCCCCCCCcCCcEeChHHhhhc---cCCCEEEECCCC-HHHHHHHHh
Confidence 3333333 4899988763211 112224578888765 356999999986 777777654
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.23 Score=49.13 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
+..+.++.+.++|+|.|+++... ... +..++.++++++.+ ++||++ |.|.|.+++++++++|+
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~---G~s-~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGa 304 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQ---GNS-IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGA 304 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCC---CCc-hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCC
Confidence 34888999999999999986532 111 23478999999997 678777 89999999999999876
|
|
| >KOG2334|consensus | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.033 Score=52.82 Aligned_cols=110 Identities=30% Similarity=0.457 Sum_probs=80.4
Q ss_pred EEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC
Q psy4398 130 IDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE 209 (306)
Q Consensus 130 veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~ 209 (306)
.++|.+||........-+......+..+..+.+..+...+.|+ .|.|.-.++.+..++++.+++.+ .+.++++..-.
T Consensus 290 ~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f~ 366 (477)
T KOG2334|consen 290 RGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIFD 366 (477)
T ss_pred hhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhccccc
Confidence 4556778886555555555555566666777777777777787 78887667788999999999998 44456655444
Q ss_pred CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHH
Q psy4398 210 RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242 (306)
Q Consensus 210 ~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~ 242 (306)
+...|..|+..+.+.....+|++++|-+.+..+
T Consensus 367 r~~~pa~~~~~k~~l~~~~~~~~~~~~~ye~~~ 399 (477)
T KOG2334|consen 367 RPTDPAKWDTPKMVLADLCVKTKANGPVYETVQ 399 (477)
T ss_pred ccCCCcCCCCHHHHHHHhhhhhcCCCcchhhhh
Confidence 445567788888777778899999999877666
|
|
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.46 Score=41.71 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=75.6
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C---CChHH---HHHHHHHHHHcC
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F---HNEAD---TIALCKRLEACG 196 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g---~~~~~---~~~~a~~l~~~G 196 (306)
.|+|.||| |.++..--.+..|| +++.+++...+|+.+-+|+ | .+..+ ..+=.+.+.++|
T Consensus 20 ~GAdRiEL-C~~La~GG~TPSyG------------~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG 86 (241)
T COG3142 20 AGADRIEL-CDALAEGGLTPSYG------------VIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELG 86 (241)
T ss_pred cCCceeeh-hhccccCCCCCCHH------------HHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcC
Confidence 49999999 54433211112233 4555666678999988886 2 12233 455567778899
Q ss_pred CcEEEEcccCCCCCC-----------CC-------------CCcHHHHHHHHhhCCC-cEEEecCCCCHHHHHHHHHhhh
Q psy4398 197 IIAIGVHGRTKAERP-----------RH-------------RNRIEMIRTLTQHLKI-PVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 197 ~d~i~v~~~~~~~~~-----------~~-------------p~~~~~v~~i~~~~~i-pvia~GGI~s~~~~~~~l~~~v 251 (306)
+++|++-+-+.++.. .+ +.-.+.+.++.+. ++ .|..+||-.|..+..+.++.++
T Consensus 87 ~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~-Gv~RILTsGg~~sa~eg~~~l~~li 165 (241)
T COG3142 87 VQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIEL-GVERILTSGGKASALEGLDLLKRLI 165 (241)
T ss_pred CCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHC-CCcEEecCCCcCchhhhHHHHHHHH
Confidence 999997655433221 00 1012233333322 44 4788899888777777776655
Q ss_pred --hhcccc-CCCCCchHHHHHHHHHhcC
Q psy4398 252 --AFLRNH-YPVEKLPKTILYAHCKYKR 276 (306)
Q Consensus 252 --~vGral-l~~p~~~~~~l~~~~~~~g 276 (306)
.=||-. +.+--.....+..+.+..|
T Consensus 166 ~~a~gri~Im~GaGV~~~N~~~l~~~tg 193 (241)
T COG3142 166 EQAKGRIIIMAGAGVRAENIAELVLLTG 193 (241)
T ss_pred HHhcCCEEEEeCCCCCHHHHHHHHHhcC
Confidence 224432 3333222224445545555
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.46 Score=44.92 Aligned_cols=102 Identities=14% Similarity=0.119 Sum_probs=66.8
Q ss_pred cccCChHHHHHHHHHHHhcc-cccEEEEeccCCC-hHHHHHHHHHHHHcCCcEEEEcccCCCC--CCCCCCcH----HHH
Q psy4398 149 ALLSTPDIACNILTTLISNL-SIPVSCKIRVFHN-EADTIALCKRLEACGIIAIGVHGRTKAE--RPRHRNRI----EMI 220 (306)
Q Consensus 149 ~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~-~~~~~~~a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~----~~v 220 (306)
....+|+ +.+-++.+|+.. +.|+.+-+..... .-+..++.+.++..++|++.+|-..... .+.++.++ +.+
T Consensus 100 ~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i 178 (352)
T PRK05437 100 AALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNI 178 (352)
T ss_pred hhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHH
Confidence 3456777 777788888876 7888887765211 1123445556666678888887432111 12222234 678
Q ss_pred HHHHhhCCCcEEE--ecCCCCHHHHHHHHHhhh
Q psy4398 221 RTLTQHLKIPVIA--NGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 221 ~~i~~~~~ipvia--~GGI~s~~~~~~~l~~~v 251 (306)
+.+++.+++||+. +|.-.+.++++.+.+.|+
T Consensus 179 ~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gv 211 (352)
T PRK05437 179 AEIVSALPVPVIVKEVGFGISKETAKRLADAGV 211 (352)
T ss_pred HHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCC
Confidence 8899988999997 555577899988888765
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=94.17 E-value=1 Score=40.25 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=68.1
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccCC--ChHHHHHHHHHHHHc
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVFH--NEADTIALCKRLEAC 195 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~--~~~~~~~~a~~l~~~ 195 (306)
|+.+++ |+|.|-+-=+... ...+|=....-..+.....+++|++.+. .||++-+-.|. +.++..+.++.+.++
T Consensus 25 A~i~e~aG~dai~v~~s~~a---~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~a 101 (240)
T cd06556 25 AKQFADAGLNVMLVGDSQGM---TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRA 101 (240)
T ss_pred HHHHHHcCCCEEEEChHHHH---HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHc
Confidence 455554 9999887321111 0011111111245667777888887775 79999998763 346788999999999
Q ss_pred CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCC
Q psy4398 196 GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237 (306)
Q Consensus 196 G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI 237 (306)
|+++|++-+.. ...+.++.++++ .+||++--|.
T Consensus 102 Ga~gv~iED~~--------~~~~~i~ai~~a-~i~ViaRtd~ 134 (240)
T cd06556 102 GAAGVKIEGGE--------WHIETLQMLTAA-AVPVIAHTGL 134 (240)
T ss_pred CCcEEEEcCcH--------HHHHHHHHHHHc-CCeEEEEeCC
Confidence 99999997631 123445566554 4899988775
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.7 Score=43.68 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=57.6
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc-------cCCC---------------------------------
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG-------RTKA--------------------------------- 208 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~-------~~~~--------------------------------- 208 (306)
+.+.+.++....|.+.+.++.++++++|+.+|.++- |.++
T Consensus 120 ~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (366)
T PLN02979 120 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA 199 (366)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHH
Confidence 346777777545556677888888888888877631 1000
Q ss_pred ----CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 209 ----ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 209 ----~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
..+.++..|+.++.+++..++|||. .||.+.+|++.+.+.|+
T Consensus 200 ~~~~~~~~~~ltW~dl~wlr~~~~~Pviv-KgV~~~~dA~~a~~~Gv 245 (366)
T PLN02979 200 SYVAGQIDRTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAIQAGA 245 (366)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHHhcCC
Confidence 0011235789999999999999875 56788999999999866
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.6 Score=40.03 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=49.1
Q ss_pred HHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC--C---CC-CCC-CcHHHHHHHHhhCCCcEEE
Q psy4398 161 LTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA--E---RP-RHR-NRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 161 v~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~--~---~~-~~p-~~~~~v~~i~~~~~ipvia 233 (306)
+...++..+.|+.+-+.. .+.++..+.|+.++++|+|+|.++-..+. . .+ ..| ...+.++.+++.+++||+.
T Consensus 81 ~~~~~~~~~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v 159 (296)
T cd04740 81 LLPWLREFGTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV 159 (296)
T ss_pred HHHHhhcCCCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence 333444457888888863 46788999999999999999998643221 1 11 111 1246778888888999885
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.52 Score=43.01 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 186 IALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.+-++.+.++|+|+|.+.. ...+.++++.+.. ++|+.++|||+ .+++.++.+.|+ ++|....
T Consensus 199 leea~eA~~~gaD~I~LD~----------~~~e~l~~~v~~~~~~i~leAsGGIt-~~ni~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 199 LDELRQALAAGADIVMLDE----------LSLDDMREAVRLTAGRAKLEASGGIN-ESTLRVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCcEEEECCCC-HHHHHHHHHcCCCEEEEChhhc
Confidence 4445556689999998742 2446667666665 79999999995 999999998876 6665433
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.18 Score=47.41 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=50.7
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+.|...+|.. ++..+.++.|.++|+|.|+++.... +. ..-.+.++.+++.+. +||| .|+|-|.+.++++++.
T Consensus 96 ~l~V~aavg~~-~~~~er~~~L~~agvD~ivID~a~g---~s-~~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~a 169 (352)
T PF00478_consen 96 RLLVAAAVGTR-DDDFERAEALVEAGVDVIVIDSAHG---HS-EHVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDA 169 (352)
T ss_dssp CBCEEEEEESS-TCHHHHHHHHHHTT-SEEEEE-SST---TS-HHHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHT
T ss_pred cceEEEEecCC-HHHHHHHHHHHHcCCCEEEccccCc---cH-HHHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHc
Confidence 44444444444 3357778888889999999964321 11 123578899999994 8888 5779999999999998
Q ss_pred hh
Q psy4398 250 NC 251 (306)
Q Consensus 250 ~v 251 (306)
|+
T Consensus 170 Ga 171 (352)
T PF00478_consen 170 GA 171 (352)
T ss_dssp T-
T ss_pred CC
Confidence 65
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.83 Score=41.22 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=61.3
Q ss_pred CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~ 190 (306)
+.+...+-|. .+++|+|.||++..+.++... +-.-....+.+..+++.+++.++.||++-.. -.+.++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~----~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~-------~~~v~e 90 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGAD----PVSVEEELERVIPVLEALRGELDVLISVDTF-------RAEVAR 90 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC----CCCHHHHHHHHHHHHHHHHhcCCCcEEEeCC-------CHHHHH
Confidence 4455555454 446799999999765443211 1112234456777888888877888877655 245555
Q ss_pred HHHHcCCcEEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 191 RLEACGIIAIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 191 ~l~~~G~d~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
.+.++|++.|. +++.. .+ +.+..+.+..++++|+.
T Consensus 91 ~al~~G~~iINdisg~~--------~~-~~~~~l~~~~~~~vV~m 126 (257)
T cd00739 91 AALEAGADIINDVSGGS--------DD-PAMLEVAAEYGAPLVLM 126 (257)
T ss_pred HHHHhCCCEEEeCCCCC--------CC-hHHHHHHHHcCCCEEEE
Confidence 66667998887 44431 11 22333444557787775
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.2 Score=40.40 Aligned_cols=116 Identities=8% Similarity=0.105 Sum_probs=75.4
Q ss_pred eeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
+.+.+++.|.|++..++....-++ +.+-+|.+.| |+...++..++.++ ...+.||
T Consensus 83 l~~~~~~~Gl~~~te~~d~~~~~~------l~~~vd~~kI--------------ga~~~~n~~LL~~~-----a~~gkPV 137 (266)
T PRK13398 83 LKEVGDKYNLPVVTEVMDTRDVEE------VADYADMLQI--------------GSRNMQNFELLKEV-----GKTKKPI 137 (266)
T ss_pred HHHHHHHcCCCEEEeeCChhhHHH------HHHhCCEEEE--------------CcccccCHHHHHHH-----hcCCCcE
Confidence 334445567788777754332111 1112466666 45555665554444 3568999
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEE-EcccCCC-CCCC-CCCcHHHHHHHHhhCCCcEEE
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIG-VHGRTKA-ERPR-HRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~-v~~~~~~-~~~~-~p~~~~~v~~i~~~~~ipvia 233 (306)
.+|-....+.+++...++.+...|..-++ ++...+. ..|. ...++..+..+++.+++||+.
T Consensus 138 ~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~ 201 (266)
T PRK13398 138 LLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIV 201 (266)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEE
Confidence 99999877889999999999999986555 4443221 1232 234677888999888999998
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.48 Score=43.06 Aligned_cols=84 Identities=8% Similarity=0.056 Sum_probs=52.6
Q ss_pred HHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC----CCcEE
Q psy4398 159 NILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL----KIPVI 232 (306)
Q Consensus 159 eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~----~ipvi 232 (306)
+-++.+|+..+ .++.+-+. + . +-+..+.++|+|+|.+.... .+.++++.+.+ ++||.
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~---t---~-eea~~A~~~gaD~I~ld~~~----------~e~l~~~v~~i~~~~~i~i~ 231 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVE---T---L-EEAEEALEAGADIIMLDNMS----------PEELKEAVKLLKGLPRVLLE 231 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecC---C---H-HHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhccCCCeEEE
Confidence 45677777664 33333333 2 2 33344456899999986432 24444444444 78999
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+.|||+ ++++.++.+.|+ ++|...++-
T Consensus 232 asGGIt-~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 232 ASGGIT-LENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred EECCCC-HHHHHHHHHcCCCEEEEcHHHcCC
Confidence 999987 888999888765 665544443
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.68 Score=43.91 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=56.7
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccC-------CCC--------------------------------
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT-------KAE-------------------------------- 209 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~-------~~~-------------------------------- 209 (306)
+-+.+..+....|-+.+.+++++++++|+.+|.++--+ ++.
T Consensus 123 ~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (364)
T PLN02535 123 NAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFA 202 (364)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHH
Confidence 44677777754455557777777777787777763110 000
Q ss_pred --CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 210 --RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 210 --~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
......+|+.++.+++..+.||| +.||.+.++++.+++.|+
T Consensus 203 ~~~~~~~~tW~~i~~lr~~~~~Pvi-vKgV~~~~dA~~a~~~Gv 245 (364)
T PLN02535 203 SETFDASLSWKDIEWLRSITNLPIL-IKGVLTREDAIKAVEVGV 245 (364)
T ss_pred HhccCCCCCHHHHHHHHhccCCCEE-EecCCCHHHHHHHHhcCC
Confidence 01223579999999999999987 466899999999998865
|
|
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=93.84 E-value=1.4 Score=39.11 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc-c-ccc-EEEEecc---CCChHHHH
Q psy4398 114 ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN-L-SIP-VSCKIRV---FHNEADTI 186 (306)
Q Consensus 114 ~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~-~~p-v~vKir~---g~~~~~~~ 186 (306)
..|.+..+.+++ ||+.|||+-|. +.-..+...++|+.+++. . ..| +-.|-.. ..+.++.+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~-------------~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i 137 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGS-------------MEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRI 137 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCc-------------cCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHH
Confidence 456667777776 99999998543 222345556677777643 1 011 1112110 13456678
Q ss_pred HHHHHHHHcCCcEEEEcccCCCC---CC--CCCCcHHHHHHHHhhCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAE---RP--RHRNRIEMIRTLTQHLK 228 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~---~~--~~p~~~~~v~~i~~~~~ 228 (306)
+.++...++||+.|.+-+|.... -+ .+....+.+.+|.+.++
T Consensus 138 ~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~ 184 (237)
T TIGR03849 138 KLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENVD 184 (237)
T ss_pred HHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhCC
Confidence 88888899999999999886532 23 23456678888887763
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.8 Score=41.43 Aligned_cols=96 Identities=20% Similarity=0.256 Sum_probs=58.4
Q ss_pred CCHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+.+...+-|+ .+++|+|.||+|++.+. .+.++.+..+++.+++.++.|+++-.. + .+.+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~------------~eE~~r~~~~v~~l~~~~~~plsIDT~---~----~~v~ 82 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAV------------EEEPETMEWLVETVQEVVDVPLCIDSP---N----PAAI 82 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCc------------hhHHHHHHHHHHHHHHhCCCCEEEeCC---C----HHHH
Confidence 34455555555 44569999999987421 234677888999998888899877666 2 2334
Q ss_pred HHHHHc--CCcEEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 190 KRLEAC--GIIAIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 190 ~~l~~~--G~d~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
+...++ |++.|. +++.. ...+.+..+.+..++|+|+
T Consensus 83 eaaL~~~~G~~iINsIs~~~--------~~~~~~~~l~~~~g~~vv~ 121 (261)
T PRK07535 83 EAGLKVAKGPPLINSVSAEG--------EKLEVVLPLVKKYNAPVVA 121 (261)
T ss_pred HHHHHhCCCCCEEEeCCCCC--------ccCHHHHHHHHHhCCCEEE
Confidence 444444 888765 33211 0123334455556788775
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.8 Score=39.49 Aligned_cols=200 Identities=17% Similarity=0.140 Sum_probs=104.1
Q ss_pred ccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccc-cccCCCCCceeeecCCCCCC
Q psy4398 24 QANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTI-DFVDPLDGSVVFRTCPREKN 102 (306)
Q Consensus 24 ~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 102 (306)
+..+.-+..++..|.+ -|..-..++.+.|+-.++|........ .+ .++.-+.+. +... ...+.....+.
T Consensus 10 fR~l~~~~~~~~~pg~--~d~~sA~la~~aGF~al~~sg~~vA~s-lG--~pD~~~~t~~e~~~-----~vrrI~~a~~l 79 (289)
T COG2513 10 FRALHASGDPLVLPGA--WDAGSALLAERAGFKALYLSGAGVAAS-LG--LPDLGITTLDEVLA-----DARRITDAVDL 79 (289)
T ss_pred HHHHHhCCCCEEecCC--cCHHHHHHHHHcCCeEEEeccHHHHHh-cC--CCccccccHHHHHH-----HHHHHHhhcCC
Confidence 3444445456666665 233444556688987776654322110 00 111100000 0000 01112233467
Q ss_pred ceEEEecC--CCHHHHHHHHHHHh-cCCCEEEEccC-CCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEec
Q psy4398 103 KIILQIGT--ADPERALEAAKKVE-HDVAAIDINMG-CPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIR 177 (306)
Q Consensus 103 p~ivql~g--~~~~~~~~aa~~~~-~g~d~veln~g-cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir 177 (306)
|+++-+-. .++...++..+.+. .|+.+|.|.=- -|.. +..--|..+ -+++...+-|++++++. +.++.+--|
T Consensus 80 Pv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~--cgh~~gk~l-~~~~e~v~rIkAa~~a~~~~~fvi~AR 156 (289)
T COG2513 80 PVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKR--CGHLPGKEL-VSIDEMVDRIKAAVEARRDPDFVIIAR 156 (289)
T ss_pred ceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchh--cCCCCCCCc-CCHHHHHHHHHHHHHhccCCCeEEEee
Confidence 99998832 23777777777665 49999888411 1110 000011122 23333333444444444 344444444
Q ss_pred c---C-CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe----cC--CCCHHHHHH
Q psy4398 178 V---F-HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN----GG--SKEIVDYGG 245 (306)
Q Consensus 178 ~---g-~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~----GG--I~s~~~~~~ 245 (306)
. + ...+++++=+++..++|+|.|-..+. .+.+.++++.+++++|+.+| |+ ..|.++.++
T Consensus 157 Tda~~~~~ld~AI~Ra~AY~eAGAD~if~~al---------~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~ 225 (289)
T COG2513 157 TDALLVEGLDDAIERAQAYVEAGADAIFPEAL---------TDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAE 225 (289)
T ss_pred hHHHHhccHHHHHHHHHHHHHcCCcEEccccC---------CCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHh
Confidence 2 1 12578889999999999999987654 24688899999998776655 33 455544433
|
|
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.95 Score=40.77 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHH-HhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~-~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+.+...+-|+. +++|+|.|++|..+..+.... . +-....+.+..+++.+++.++.||++-.. -.+.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~--~--~~~~E~~rl~~~v~~l~~~~~~piSIDT~-------~~~v~ 89 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEP--V--SVEEELERVIPVLRALAGEPDVPISVDTF-------NAEVA 89 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc--C--CHHHHHHHHHHHHHHHHhcCCCeEEEeCC-------cHHHH
Confidence 355666665554 457999999998875542211 0 11123456788888888877888776655 24566
Q ss_pred HHHHHcCCcEEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 190 KRLEACGIIAIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 190 ~~l~~~G~d~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
+...+.|++.|. +++.. .+ +-+..+.+..++|++..
T Consensus 90 ~aaL~~g~~iINdis~~~--------~~-~~~~~l~~~~~~~vV~m 126 (258)
T cd00423 90 EAALKAGADIINDVSGGR--------GD-PEMAPLAAEYGAPVVLM 126 (258)
T ss_pred HHHHHhCCCEEEeCCCCC--------CC-hHHHHHHHHcCCCEEEE
Confidence 666778888765 22211 11 23334555567777765
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.25 Score=41.66 Aligned_cols=74 Identities=30% Similarity=0.361 Sum_probs=43.9
Q ss_pred HHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCC
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI 197 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~ 197 (306)
-|+++++ |+-+|..-=-.|... |+. -|-+-+.||..+.+|. +++.+||..|.|+|- .--|+.|+..|+
T Consensus 26 QAkIAE~AGA~AVMaLervPadi-R~~-GGVaRMsDP~~I~eI~----~aVsIPVMAK~RIGH-----fvEAqiLealgV 94 (208)
T PF01680_consen 26 QAKIAEEAGAVAVMALERVPADI-RAA-GGVARMSDPKMIKEIM----DAVSIPVMAKVRIGH-----FVEAQILEALGV 94 (208)
T ss_dssp HHHHHHHHT-SEEEE-SS-HHHH-HHT-TS---S--HHHHHHHH----HH-SSEEEEEEETT------HHHHHHHHHTT-
T ss_pred HHHHHHHhCCeEEEEeccCCHhH-Hhc-CCccccCCHHHHHHHH----HheEeceeeccccce-----eehhhhHHHhCC
Confidence 3566664 888877643445432 222 2556778898766665 456899999999764 345789999999
Q ss_pred cEEEEc
Q psy4398 198 IAIGVH 203 (306)
Q Consensus 198 d~i~v~ 203 (306)
|+|.=+
T Consensus 95 D~IDES 100 (208)
T PF01680_consen 95 DYIDES 100 (208)
T ss_dssp SEEEEE
T ss_pred ceeccc
Confidence 999854
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=93.73 E-value=4.5 Score=36.47 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=43.1
Q ss_pred ceEEEecCCCH-HHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 103 KIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 103 p~ivql~g~~~-~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
...+.|+|-.. ++...+ ++.|+|.|-+.+..+++. + =.++.+.++++.+......+|.|-.. .+
T Consensus 46 ~~~VKICGit~~eda~~a---~~~GaD~iGfIf~~~SpR-----~-----Vs~e~a~~I~~~l~~~~~~~VgVfv~--~~ 110 (256)
T PLN02363 46 RPLVKMCGITSARDAAMA---VEAGADFIGMILWPKSKR-----S-----ISLSVAKEISQVAREGGAKPVGVFVD--DD 110 (256)
T ss_pred CceEEECCCCcHHHHHHH---HHcCCCEEEEecCCCCCC-----c-----CCHHHHHHHHHhccccCccEEEEEeC--CC
Confidence 45799999654 333322 246999999975433321 1 13555666666554211112333322 22
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 182 EADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
..++++.+++.|.|.|.+|+
T Consensus 111 ---~~~I~~~~~~~~ld~VQLHG 130 (256)
T PLN02363 111 ---ANTILRAADSSDLELVQLHG 130 (256)
T ss_pred ---HHHHHHHHHhcCCCEEEECC
Confidence 33444455566666666665
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.7 Score=43.15 Aligned_cols=91 Identities=12% Similarity=0.174 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccC--CCCCCCCC----CcHHHHHHHHhhCC
Q psy4398 155 DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT--KAERPRHR----NRIEMIRTLTQHLK 228 (306)
Q Consensus 155 ~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~--~~~~~~~p----~~~~~v~~i~~~~~ 228 (306)
+...+-++..++..+.|+++-+. |.+.++..++++.++++|+|+|.++-.. ......+. ...+.++.+++.++
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~ 163 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT 163 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC
Confidence 33444444455555789988874 3567789999999999999999986432 11111111 12467888998889
Q ss_pred CcEEEe--cCCCCHHHHHHH
Q psy4398 229 IPVIAN--GGSKEIVDYGGV 246 (306)
Q Consensus 229 ipvia~--GGI~s~~~~~~~ 246 (306)
+||+.= ..+.++.+..+.
T Consensus 164 iPv~vKl~p~~~~~~~~a~~ 183 (325)
T cd04739 164 IPVAVKLSPFFSALAHMAKQ 183 (325)
T ss_pred CCEEEEcCCCccCHHHHHHH
Confidence 999876 333344444333
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.77 Score=42.48 Aligned_cols=152 Identities=11% Similarity=0.091 Sum_probs=85.8
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC-----CC---------hHH
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF-----HN---------EAD 184 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g-----~~---------~~~ 184 (306)
++++++ |+|++-+=+-. +.|+--..=..+..+++++.+..+. -++|+++-+=.. .. ++.
T Consensus 111 ~~rike~GadavK~Llyy-----~pD~~~~in~~k~a~vervg~eC~a-~dipf~lE~ltY~~~~~d~~~~~yak~kP~~ 184 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYY-----DVDEPDEINEQKKAYIERIGSECVA-EDIPFFLEILTYDEKIADNGSVEYAKVKPHK 184 (324)
T ss_pred HHHHHHhCCCeEEEEEEE-----CCCCCHHHHHHHHHHHHHHHHHHHH-CCCCeEEEEeeccCcccccccHHHHhhChHH
Confidence 566765 99999884331 1111000000122334444444333 278888764331 11 334
Q ss_pred HHHHHHHHHH--cCCcEEEEcc----cCCCCCC------CCCCcHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHHh--
Q psy4398 185 TIALCKRLEA--CGIIAIGVHG----RTKAERP------RHRNRIEMIRTLTQHLKIP-VIANGGSKEIVDYGGVFSL-- 249 (306)
Q Consensus 185 ~~~~a~~l~~--~G~d~i~v~~----~~~~~~~------~~p~~~~~v~~i~~~~~ip-via~GGI~s~~~~~~~l~~-- 249 (306)
..+.++.+.+ .|+|-+-+-- ...++.. ........+++..+..++| |+.++|+. .+...+.++.
T Consensus 185 V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~-~~~F~~~l~~A~ 263 (324)
T PRK12399 185 VNEAMKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKEQDAATHLPYIYLSAGVS-AELFQETLVFAH 263 (324)
T ss_pred HHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCC-HHHHHHHHHHHH
Confidence 5677788855 8999998731 1112211 1111223455566667888 67778875 5556555543
Q ss_pred -------hhhhccccCCCCC--c---hHHHHHHHHHhcCCC
Q psy4398 250 -------NCAFLRNHYPVEK--L---PKTILYAHCKYKRFE 278 (306)
Q Consensus 250 -------~v~vGrall~~p~--~---~~~~l~~~~~~~g~~ 278 (306)
|+..||+..+++. + .....++||...|.+
T Consensus 264 ~aGa~fsGvL~GRAtW~~~v~~~~~~g~~~~~ewL~t~g~~ 304 (324)
T PRK12399 264 EAGAKFNGVLCGRATWAGSVKVYIEQGEAAAREWLRTEGFE 304 (324)
T ss_pred HcCCCcceEEeehhhhHhhhhhhhcCCHHHHHHHHHHHhHH
Confidence 5689999999872 2 334999999999854
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.96 Score=42.92 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=31.7
Q ss_pred CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 214 RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 214 p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
..+|+.++.+++..++|||. .||.+.+|++.+++.|+
T Consensus 210 ~~tW~di~wlr~~~~~Piiv-KgV~~~~dA~~a~~~Gv 246 (367)
T PLN02493 210 TLSWKDVQWLQTITKLPILV-KGVLTGEDARIAIQAGA 246 (367)
T ss_pred CCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHHHcCC
Confidence 35799999999999999875 56788999999999876
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.7 Score=37.86 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=76.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC-
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF- 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g- 179 (306)
.|++.=|.+.++++....++.+.+ |++.|||-+.+|.. .+.|+++++... .+-+..|
T Consensus 13 ~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a------------------~e~I~~l~~~~p---~~lIGAGT 71 (211)
T COG0800 13 QPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAA------------------LEAIRALAKEFP---EALIGAGT 71 (211)
T ss_pred CCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCH------------------HHHHHHHHHhCc---ccEEcccc
Confidence 478888889999999999997765 99999998777662 456777777644 3333322
Q ss_pred -CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 180 -HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 180 -~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+ .+-++.+.++|++.++ +.. .+-+.++ .....++|++ =|+.|+.++..++++|.
T Consensus 72 VL~----~~q~~~a~~aGa~fiV-sP~---------~~~ev~~-~a~~~~ip~~--PG~~TptEi~~Ale~G~ 127 (211)
T COG0800 72 VLN----PEQARQAIAAGAQFIV-SPG---------LNPEVAK-AANRYGIPYI--PGVATPTEIMAALELGA 127 (211)
T ss_pred ccC----HHHHHHHHHcCCCEEE-CCC---------CCHHHHH-HHHhCCCccc--CCCCCHHHHHHHHHcCh
Confidence 23 3445667789999985 211 1223433 3344467775 58888998888888754
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=93.51 E-value=2.1 Score=37.34 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=75.3
Q ss_pred CCceEEEecCC----CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 101 KNKIILQIGTA----DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 101 ~~p~ivql~g~----~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
|..+.+|.... +.....++++.+.+ |+..+++ ++ + +.++.+++..++|+..-
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~--~~-----------------~----~~~~~i~~~~~iPil~~ 66 (219)
T cd04729 10 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA--NG-----------------V----EDIRAIRARVDLPIIGL 66 (219)
T ss_pred CeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc--CC-----------------H----HHHHHHHHhCCCCEEEE
Confidence 44455565432 34567788887664 8888774 11 2 34566666678898642
Q ss_pred eccCCC-----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 176 IRVFHN-----EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 176 ir~g~~-----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
.+.+.+ .....+.++.+.++|+|.|.+...... ...+....++++.+++..++|++. ++.|++++..+.+.+
T Consensus 67 ~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~~~G 143 (219)
T cd04729 67 IKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEYNCLLMA--DISTLEEALNAAKLG 143 (219)
T ss_pred EecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHHHcC
Confidence 221111 011245778889999998877543211 111112456777887776677765 678899988887776
Q ss_pred h
Q psy4398 251 C 251 (306)
Q Consensus 251 v 251 (306)
+
T Consensus 144 ~ 144 (219)
T cd04729 144 F 144 (219)
T ss_pred C
Confidence 5
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=1.3 Score=41.27 Aligned_cols=106 Identities=10% Similarity=0.057 Sum_probs=60.4
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC--CChHHHHHHHHHHHHcCCcEEEE
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF--HNEADTIALCKRLEACGIIAIGV 202 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g--~~~~~~~~~a~~l~~~G~d~i~v 202 (306)
.|+|.|+||+.+..++. + ...++...++++.|.+.+++|+.+-.+.. .+.+-....++.+.. =..| +
T Consensus 88 ~GAd~Idl~~~s~dp~~-~-------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g--~~pL-I 156 (319)
T PRK04452 88 YGADMITLHLISTDPNG-K-------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEG--ERCL-L 156 (319)
T ss_pred hCCCEEEEECCCCCccc-c-------cchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCC--CCCE-E
Confidence 39999999975433210 0 12356678899999889999998766621 232323333232221 1223 2
Q ss_pred cccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 203 HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 203 ~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+-+ ..+++.+..+.+..+.||++.. +.+++.++++...
T Consensus 157 nSat-------~en~~~i~~lA~~y~~~Vva~s-~~Dln~ak~L~~~ 195 (319)
T PRK04452 157 GSAE-------EDNYKKIAAAAMAYGHAVIAWS-PLDINLAKQLNIL 195 (319)
T ss_pred EECC-------HHHHHHHHHHHHHhCCeEEEEc-HHHHHHHHHHHHH
Confidence 2222 1256777777777888888876 3345555555443
|
|
| >cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.6 Score=42.04 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=67.2
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= |+..|.. .-+.+|.+.+.+.+++..+.++...
T Consensus 141 ~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~~~~~a~~~a~~eTG~~~ 212 (406)
T cd08207 141 EDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPY--------SPLDERVRAVMRVINDHAQRTGRKV 212 (406)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCC--------CcHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5689999875 6789999999887765 7777522 3433221 2344667777888888877777654
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+=++.+.+.|++++.+.
T Consensus 213 ~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~ 243 (406)
T cd08207 213 MYAFNITDDIDEMRRNHDLVVEAGGTCVMVS 243 (406)
T ss_pred eEEEecCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 4333332557889999999999999999874
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=4.3 Score=35.59 Aligned_cols=138 Identities=12% Similarity=0.063 Sum_probs=76.7
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
+.++++-|--.|+..+..-+ .++.|+|.+-+|..+ ..+.+.+.++++++. +.-+.|-+-...
T Consensus 56 ~~~v~~DLK~~Di~~~v~~~-~~~~Gad~vTvH~~a----------------~~~~i~~~~~~~~~~-g~~~~V~llts~ 117 (216)
T PRK13306 56 DKIIVADTKIADAGKILAKM-AFEAGADWVTVICAA----------------HIPTIKAALKVAKEF-NGEIQIELYGNW 117 (216)
T ss_pred CCEEEEEEeecCCcHHHHHH-HHHCCCCEEEEeCCC----------------CHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 45788888777777666534 345699999998543 234556666666542 333333333223
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCC---CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKA---ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFL 254 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~---~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vG 254 (306)
+.++. +...+.|++.+.+|-.... +....|..++.++++++. +..+...|||+ ++.+....+. .+.+|
T Consensus 118 ~~~~l----~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~-~~~i~V~gGI~-~~~~~~~~~~~ad~~VvG 191 (216)
T PRK13306 118 TWEQA----QQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDM-GFKVSVTGGLV-VEDLKLFKGIPVKTFIAG 191 (216)
T ss_pred CHHHH----HHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcC-CCeEEEcCCCC-HhhHHHHhcCCCCEEEEC
Confidence 33322 3455667666655432211 111123234445555432 44488889998 4444444443 44999
Q ss_pred cccCCCCC
Q psy4398 255 RNHYPVEK 262 (306)
Q Consensus 255 rall~~p~ 262 (306)
|+++..+.
T Consensus 192 r~I~~a~d 199 (216)
T PRK13306 192 RAIRGAAD 199 (216)
T ss_pred CcccCCCC
Confidence 99986443
|
|
| >TIGR01232 lacD tagatose 1,6-diphosphate aldolase | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.94 Score=41.93 Aligned_cols=148 Identities=9% Similarity=0.077 Sum_probs=84.6
Q ss_pred HHHHhc-CCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEeccC---------C-----
Q psy4398 120 AKKVEH-DVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKIRVF---------H----- 180 (306)
Q Consensus 120 a~~~~~-g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~g---------~----- 180 (306)
++++++ |+|++-+=+-. |. . ..-.| +.-.++++++.+.| ++|+++-+=.. .
T Consensus 112 ~~rike~GadavK~Llyy~pD------~--~~ein--~~k~a~vervg~ec~a~dipf~lE~ltYd~~~~~~~~~~yak~ 181 (325)
T TIGR01232 112 AKRLKEQGANAVKFLLYYDVD------D--AEEIN--IQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFAKV 181 (325)
T ss_pred HHHHHHhCCCeEEEEEEeCCC------C--ChHHH--HHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCCCCcHHHHHh
Confidence 566765 99999884331 11 0 00001 11233444444443 78888764331 0
Q ss_pred ChHHHHHHHHHHHH--cCCcEEEEc----ccCCCCC------CCCCCcHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHH
Q psy4398 181 NEADTIALCKRLEA--CGIIAIGVH----GRTKAER------PRHRNRIEMIRTLTQHLKIP-VIANGGSKEIVDYGGVF 247 (306)
Q Consensus 181 ~~~~~~~~a~~l~~--~G~d~i~v~----~~~~~~~------~~~p~~~~~v~~i~~~~~ip-via~GGI~s~~~~~~~l 247 (306)
.++...+.++.+.+ .|+|-+-+- ....++. |........+++..+..++| |+.++|+. .+...+.+
T Consensus 182 kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~eq~~~~~~P~i~LSaGV~-~~~F~~~l 260 (325)
T TIGR01232 182 KPRKVNEAMKLFSEPRFNVDVLKVEVPVNVKYVEGFAEGEVVYTKEEAAQHFKDQDAATHLPYIYLSAGVS-AELFQETL 260 (325)
T ss_pred ChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCC-HHHHHHHH
Confidence 02235567777777 899999864 2211221 11112233444445567888 67778875 55566555
Q ss_pred Hh---------hhhhccccCCCCC--c---hHHHHHHHHHhcCCC
Q psy4398 248 SL---------NCAFLRNHYPVEK--L---PKTILYAHCKYKRFE 278 (306)
Q Consensus 248 ~~---------~v~vGrall~~p~--~---~~~~l~~~~~~~g~~ 278 (306)
+. |+..||+..++.. + .....++||...|.+
T Consensus 261 ~~A~~aGa~fsGvL~GRAtW~~~v~~~~~~g~~~~~ewL~t~g~~ 305 (325)
T TIGR01232 261 KFAHEAGAKFNGVLCGRATWSGAVQVYIEQGEDAAREWLRTTGFK 305 (325)
T ss_pred HHHHHcCCCcceEEeehhhhHhhhhhhhcCCHHHHHHHHHHHhHH
Confidence 43 5689999999872 2 334999999998854
|
This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation. |
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.3 Score=41.59 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=78.9
Q ss_pred eeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
+.+.+++.|.|++..++... +... +.+.+|.+.| |+..+++..++.++- ..+.||
T Consensus 149 L~~~~~~~Gl~v~tev~d~~--~~~~----l~~~vd~lqI--------------gAr~~~N~~LL~~va-----~~~kPV 203 (335)
T PRK08673 149 LAEAREETGLPIVTEVMDPR--DVEL----VAEYVDILQI--------------GARNMQNFDLLKEVG-----KTNKPV 203 (335)
T ss_pred HHHHHHHcCCcEEEeeCCHH--HHHH----HHHhCCeEEE--------------CcccccCHHHHHHHH-----cCCCcE
Confidence 34445567888887775432 2222 2223577777 556667777665553 468999
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEE-EcccCCC-CCC-CCCCcHHHHHHHHhhCCCcEEE
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIG-VHGRTKA-ERP-RHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~-v~~~~~~-~~~-~~p~~~~~v~~i~~~~~ipvia 233 (306)
.+|-....+.+++...++.+...|..-++ ++...+. ..+ ....++..+..+++.+++|||+
T Consensus 204 iLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~ 267 (335)
T PRK08673 204 LLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIV 267 (335)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEE
Confidence 99999877889999999999999986665 4532322 122 2345788899999999999977
|
|
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.66 Score=40.46 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=46.2
Q ss_pred HHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEEeccCCChHHHHHHHHHHHHcCC
Q psy4398 119 AAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCKIRVFHNEADTIALCKRLEACGI 197 (306)
Q Consensus 119 aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~ 197 (306)
+.+.+++|+|.||||.++-.+... ...-....+.+..+++.+++ ..++||++-.. + .+.++.+.++|+
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~~----~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~---~----~~v~~~aL~~g~ 93 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGAT----PVSEEEEMERLVPVLQAIREENPDVPLSIDTF---N----PEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTSS----SSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES---S----HHHHHHHHHHTS
T ss_pred HHHHHHhcCCEEEecccccCCCCC----cCCHHHHHHHHHHHHHHHhccCCCeEEEEECC---C----HHHHHHHHHcCc
Confidence 334556799999999987443210 11223456678888888886 55889988777 2 344444555588
Q ss_pred cEEEE
Q psy4398 198 IAIGV 202 (306)
Q Consensus 198 d~i~v 202 (306)
+.|.=
T Consensus 94 ~~ind 98 (210)
T PF00809_consen 94 DIIND 98 (210)
T ss_dssp SEEEE
T ss_pred ceEEe
Confidence 88763
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.1 Score=40.13 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=75.6
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.+.|.|++--+. ++++...++ +.+|.+.| |+.++++.++ ++++.+ ++.||.+|-.
T Consensus 70 ~~~glpvvTeV~--~~~~~~~va----e~vDilQI--------------gArn~rn~~L----L~a~g~-t~kpV~lKrG 124 (258)
T TIGR01362 70 EEFGVPILTDVH--ESSQCEPVA----EVVDIIQI--------------PAFLCRQTDL----LVAAAK-TGRIVNVKKG 124 (258)
T ss_pred HHhCCceEEEeC--CHHHHHHHH----hhCcEEEe--------------CchhcchHHH----HHHHhc-cCCeEEecCC
Confidence 346778877663 333333333 34789888 4556666554 555543 5899999999
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-CCcHHHHHHHHhhCCCcEEE
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH-RNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p~~~~~v~~i~~~~~ipvia 233 (306)
.+.+++++...++.+...|-+-|.+.-|-..-.|.. ..++..+..+++. ++|||.
T Consensus 125 ~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k~~-~~PVi~ 180 (258)
T TIGR01362 125 QFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMREL-GCPVIF 180 (258)
T ss_pred CcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhc-CCCEEE
Confidence 888899999999999999999888765543222322 3466777777775 899986
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase | Back alignment and domain information |
|---|
Probab=93.32 E-value=3.7 Score=36.01 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=60.7
Q ss_pred eEEEecCC-CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc---C
Q psy4398 104 IILQIGTA-DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV---F 179 (306)
Q Consensus 104 ~ivql~g~-~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~---g 179 (306)
++++|.+. +.++..+.++... |+|.||+ |-|.+... ..+.+.+.++.+++..+.|+++=+|. |
T Consensus 2 i~~~i~~~~~~~e~~~~~~~~~-~aD~vEl---------R~D~~~~~---~~~~~~~~~~~lr~~~~~piI~T~R~~~eG 68 (225)
T cd00502 2 ICVPLTGPDLLEEALSLLELLL-GADAVEL---------RVDLLEDP---SIDDVAEQLSLLRELTPLPIIFTVRTKSEG 68 (225)
T ss_pred EEEEecCCCCHHHHHHHHHHhc-CCCEEEE---------EEeecccc---chHHHHHHHHHHHHhCCCCEEEEEcccccC
Confidence 45677666 6666555555444 8999999 33333211 14566778888888777899998886 2
Q ss_pred ----CChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 180 ----HNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 180 ----~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.+.++..++.+.+.+.|+|+|.+.-
T Consensus 69 G~~~~~~~~~~~ll~~~~~~~~d~vDiEl 97 (225)
T cd00502 69 GNFEGSEEEYLELLEEALKLGPDYVDIEL 97 (225)
T ss_pred CCcCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 2345577888888889999999853
|
) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism. |
| >COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.48 Score=42.36 Aligned_cols=149 Identities=9% Similarity=0.070 Sum_probs=85.4
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc----CCCh--------HHHH
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV----FHNE--------ADTI 186 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~----g~~~--------~~~~ 186 (306)
|+++++ |++++-+-+-. +.|+- ..-+++...+.++....++. ++|+++-.=. ..+. ....
T Consensus 117 a~riK~~G~~avK~Lvy~-----~~D~~-e~neqk~a~ierigsec~ae-di~f~lE~ltyd~~~~d~~eyak~kp~kV~ 189 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYY-----RSDED-EINEQKLAYIERIGSECHAE-DLPFFLEPLTYDPRIGDKEEYAKRKPQKVI 189 (306)
T ss_pred HHHHHHhcccceEEEEEE-----cCCch-HHhHHHHHHHHHHHHHhhhc-CCceeEeeeecCCCCCChHHHHhhchHHHH
Confidence 567775 99998885432 11221 01112233344444433322 7887776433 1122 2356
Q ss_pred HHHHHHHHcCCcEEEEcccC-CCCCCCCCCcHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHHh-------hhhhcccc
Q psy4398 187 ALCKRLEACGIIAIGVHGRT-KAERPRHRNRIEMIRTLTQHLKIP-VIANGGSKEIVDYGGVFSL-------NCAFLRNH 257 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~-~~~~~~~p~~~~~v~~i~~~~~ip-via~GGI~s~~~~~~~l~~-------~v~vGral 257 (306)
+-++.+.+.|+|-+-+--.. .++ ..+.....+.+...+.++| |+.+-||. .+.+.+.++. |+..||+.
T Consensus 190 ~a~k~fsd~GadvlKvevPvyveG--e~~ea~~~f~~~~~~~~lP~i~LSAGV~-~klF~~tv~fA~eaGAsGvL~GRAt 266 (306)
T COG3684 190 EAMKEFSDSGADVLKVEVPVYVEG--EQEEAAAAFQRQNDHINLPWIYLSAGVS-AKLFQRTVRFAMEAGASGVLAGRAT 266 (306)
T ss_pred HHHHHhccCCCceEEeecceeccC--ccHHHHHHHHHhhcCCCCCeEEEecCcc-HHHhHHHHHHHHHcCCceeEechhh
Confidence 67788888999999874322 111 1122334445555566888 77788876 3444444432 56889998
Q ss_pred CCCC-CchHHHHHHHHHhcCCC
Q psy4398 258 YPVE-KLPKTILYAHCKYKRFE 278 (306)
Q Consensus 258 l~~p-~~~~~~l~~~~~~~g~~ 278 (306)
.++- ....-+.++||..-|.+
T Consensus 267 Wa~~v~~g~d~~re~Lrt~g~~ 288 (306)
T COG3684 267 WAGVVEQGEDAAREWLRTVGFP 288 (306)
T ss_pred hhcccccCcHHHHHHHHhhccc
Confidence 8876 44445888999988855
|
|
| >PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.57 Score=43.39 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=86.3
Q ss_pred HHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-----C---------hH
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-----N---------EA 183 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-----~---------~~ 183 (306)
.++++++ |+|++-+=+-. +.|+--..=..+..+++++.+..+. -++|+++-+=..+ . ++
T Consensus 112 s~~rike~GadavK~Llyy-----~pD~~~ein~~k~a~vervg~eC~a-~dipf~lE~l~Yd~~~~d~~~~eyak~kP~ 185 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYY-----DVDGDEEINDQKQAYIERIGSECTA-EDIPFFLELLTYDERISDNNSAAYAKLKPH 185 (329)
T ss_pred hHHHHHHhCCCeEEEEEEE-----CCCCCHHHHHHHHHHHHHHHHHHHH-CCCCeEEEEeccCCcccccccHHHHhhChH
Confidence 4567765 99999884331 0110000000112334444444333 2889888654311 0 22
Q ss_pred HHHHHHHHHHH--cCCcEEEEcc----cCCCCC------CCCCCcHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHHh-
Q psy4398 184 DTIALCKRLEA--CGIIAIGVHG----RTKAER------PRHRNRIEMIRTLTQHLKIP-VIANGGSKEIVDYGGVFSL- 249 (306)
Q Consensus 184 ~~~~~a~~l~~--~G~d~i~v~~----~~~~~~------~~~p~~~~~v~~i~~~~~ip-via~GGI~s~~~~~~~l~~- 249 (306)
...+.++.+.+ .|+|-+-+-- ...++. |........+++..+..++| |+.++|+. .+...+.++.
T Consensus 186 ~V~~amkefs~~~~gvDVlKvEvPvn~~~veG~~~g~~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~-~~~F~~~l~~A 264 (329)
T PRK04161 186 KVNGAMKVFSDKRFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEAATHLPYIYLSAGVS-AKLFQETLVFA 264 (329)
T ss_pred HHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhcccCCCEEEEcCCCC-HHHHHHHHHHH
Confidence 35677777775 7999998721 111221 11112234556666667888 67778875 5566665543
Q ss_pred --------hhhhccccCCCC--Cc---hHHHHHHHHHhcCCC
Q psy4398 250 --------NCAFLRNHYPVE--KL---PKTILYAHCKYKRFE 278 (306)
Q Consensus 250 --------~v~vGrall~~p--~~---~~~~l~~~~~~~g~~ 278 (306)
|+..||+..+++ .+ .+...++||...|.+
T Consensus 265 ~~aGa~fnGvL~GRAtW~~~v~~~~~~g~~a~~~wL~t~g~~ 306 (329)
T PRK04161 265 AEAGAQFNGVLCGRATWAGSVPVYITEGEEAARKWLCTEGFQ 306 (329)
T ss_pred HhcCCCcccEEeehhhhhhhhhhhhcCCHHHHHHHHHHHhHH
Confidence 568999999987 22 124899999999855
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.81 Score=43.53 Aligned_cols=77 Identities=23% Similarity=0.291 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+.+.|.+.|+.+.+ |+|-|-|- |-.| .-.|....|+|+++++.+++||.+-......... ....
T Consensus 153 Ht~e~yv~~akel~~~g~DSIciK----------DmaG---lltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~-m~yl 218 (472)
T COG5016 153 HTLEYYVELAKELLEMGVDSICIK----------DMAG---LLTPYEAYELVKAIKKELPVPVELHTHATSGMAE-MTYL 218 (472)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEee----------cccc---cCChHHHHHHHHHHHHhcCCeeEEecccccchHH-HHHH
Confidence 356889999987765 99988883 3333 2478999999999999999888877663111111 1222
Q ss_pred HHHHHcCCcEEEE
Q psy4398 190 KRLEACGIIAIGV 202 (306)
Q Consensus 190 ~~l~~~G~d~i~v 202 (306)
.+.++|+|.|..
T Consensus 219 -kAvEAGvD~iDT 230 (472)
T COG5016 219 -KAVEAGVDGIDT 230 (472)
T ss_pred -HHHHhCcchhhh
Confidence 335699999974
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=93.20 E-value=2 Score=40.82 Aligned_cols=46 Identities=13% Similarity=-0.024 Sum_probs=37.9
Q ss_pred CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-------hhccccCCCC
Q psy4398 215 NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-------AFLRNHYPVE 261 (306)
Q Consensus 215 ~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-------~vGrall~~p 261 (306)
.+|+.++++++.+++||+.= ||.+.++++.+.+.|+ -=||.+...|
T Consensus 215 ~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~ 267 (367)
T TIGR02708 215 LSPRDIEEIAGYSGLPVYVK-GPQCPEDADRALKAGASGIWVTNHGGRQLDGGP 267 (367)
T ss_pred CCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHHHcCcCEEEECCcCccCCCCCC
Confidence 57899999999999999955 7999999999999876 2267776666
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.4 Score=41.50 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=61.7
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC-------C--C----------------------------CC
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK-------A--E----------------------------RP 211 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~-------~--~----------------------------~~ 211 (306)
+.|+++-+....+.+.+.++.++++++|+++|.+|--.. + . ..
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 357887766555667789999999999999999863221 0 0 00
Q ss_pred CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 212 RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 212 ~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+...|+.++++++.+++|||.- ||.+.++++.+.+.|+
T Consensus 197 ~~~~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~~~G~ 235 (344)
T cd02922 197 DPTLTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAAEYGV 235 (344)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHHHcCC
Confidence 12246889999999999999977 6789999999988765
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=93.01 E-value=1.2 Score=41.58 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=42.8
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
+.+++.|++.+-|..+. -.++++++.+++. +.|||.+-|..+.++++.+++...
T Consensus 103 d~l~~~~v~~~KIaS~~-------~~n~pLL~~~A~~-gkPvilStGmatl~Ei~~Av~~i~ 156 (329)
T TIGR03569 103 DFLEDLGVPRFKIPSGE-------ITNAPLLKKIARF-GKPVILSTGMATLEEIEAAVGVLR 156 (329)
T ss_pred HHHHhcCCCEEEECccc-------ccCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHHHH
Confidence 44567888888886553 2478899999865 899999999999999999988644
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.94 Score=42.19 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCc
Q psy4398 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACG--IIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIP 230 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G--~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ip 230 (306)
+++...+.++.++. .-+.+-++.|.+.++... +..+.++| +|.|.+..-. .++. .-++.++.+++.++.|
T Consensus 67 ~~E~~~sfvrk~k~---~~L~v~~SvG~t~e~~~r-~~~lv~a~~~~d~i~~D~ah---g~s~-~~~~~i~~i~~~~p~~ 138 (321)
T TIGR01306 67 DEESRIPFIKDMQE---RGLFASISVGVKACEYEF-VTQLAEEALTPEYITIDIAH---GHSN-SVINMIKHIKTHLPDS 138 (321)
T ss_pred CHHHHHHHHHhccc---cccEEEEEcCCCHHHHHH-HHHHHhcCCCCCEEEEeCcc---CchH-HHHHHHHHHHHhCCCC
Confidence 44443444444432 234666666666665544 45555667 7999875321 2221 2568899999999999
Q ss_pred EEEecCCCCHHHHHHHHHhhh
Q psy4398 231 VIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 231 via~GGI~s~~~~~~~l~~~v 251 (306)
.+..|+|.+.++++.+++.|+
T Consensus 139 ~vi~GnV~t~e~a~~l~~aGa 159 (321)
T TIGR01306 139 FVIAGNVGTPEAVRELENAGA 159 (321)
T ss_pred EEEEecCCCHHHHHHHHHcCc
Confidence 999999999999999999865
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Back alignment and domain information |
|---|
Probab=92.85 E-value=2 Score=41.19 Aligned_cols=96 Identities=13% Similarity=0.036 Sum_probs=67.7
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= |+..|.. .-+.+|.+.+.+.+++..+.++...
T Consensus 122 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~a~~~a~~~a~~eTG~~~ 193 (391)
T cd08209 122 HDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPL--------APALERIRACRPVLQEVYEQTGRRT 193 (391)
T ss_pred CCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCC--------CCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5789999875 6789999999887765 7776522 3332221 2345677777888888888887654
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+=++.+.+.|++++.+.
T Consensus 194 ~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~ 224 (391)
T cd08209 194 LYAVNLTGPVFTLKEKARRLVEAGANALLFN 224 (391)
T ss_pred eEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 4333332567889999999999999999864
|
Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine. |
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.28 Score=42.33 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=64.8
Q ss_pred HhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEE
Q psy4398 123 VEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202 (306)
Q Consensus 123 ~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v 202 (306)
++.|+|.+-+.+. |.+. . + -.++.+.++++.++.. +|.|-.. . +..++.+.+++.+.|.|.+
T Consensus 16 ~~~g~d~~Gfi~~-~~S~---R-~-----v~~~~a~~l~~~~~~~---~VgVf~~--~---~~~~I~~~~~~~~ld~vQL 77 (197)
T PF00697_consen 16 AELGADYLGFIFY-PKSP---R-Y-----VSPDQARELVSAVPPK---IVGVFVN--Q---SPEEILEIVEELGLDVVQL 77 (197)
T ss_dssp HHHTSSEEEEE---TTCT---T-B-------HHHHHHHHCCSSSS---EEEEESS--S----HHHHHHHHHHCTESEEEE
T ss_pred HHcCCCEEeeecC-CCCC---C-c-----cCHHHHHHHHHhcCCC---EEEEEcC--C---CHHHHHHHHHHcCCCEEEE
Confidence 3458899888754 3310 0 1 1355555555444311 3333333 2 3556667778888999998
Q ss_pred cccCC--------------------C-----------------------CCCCCCCcHHHHHHHHhhC-CCcEEEecCCC
Q psy4398 203 HGRTK--------------------A-----------------------ERPRHRNRIEMIRTLTQHL-KIPVIANGGSK 238 (306)
Q Consensus 203 ~~~~~--------------------~-----------------------~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~ 238 (306)
|+... . +......+|+.+..+.+.. +.|++..|||+
T Consensus 78 HG~e~~e~~~~l~~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~~~dw~~~~~~~~~~~~~p~iLAGGl~ 157 (197)
T PF00697_consen 78 HGDESPEYIKLLRAGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGKTFDWSLLKKIVESYSPKPVILAGGLN 157 (197)
T ss_dssp -SGG-HHHHHHHHTTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS---GGGGCCCHHT-GTSTEEEESS--
T ss_pred CCCCCHHHHHHhhcCceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCcccCHHHhhhhhhhcccCcEEEEcCCC
Confidence 87430 0 0001134788888887743 89999999987
Q ss_pred CHHHHHHHHHh----hhhhccccCCCC
Q psy4398 239 EIVDYGGVFSL----NCAFLRNHYPVE 261 (306)
Q Consensus 239 s~~~~~~~l~~----~v~vGrall~~p 261 (306)
+++..++++. ++-+-+++=.+|
T Consensus 158 -p~NV~~ai~~~~p~gvDvsSGvE~~p 183 (197)
T PF00697_consen 158 -PENVREAIRQVRPYGVDVSSGVETSP 183 (197)
T ss_dssp -TTTHHHHHHHC--SEEEESGGGEEET
T ss_pred -hHHHHHHHHhcCceEEEeCCccccCC
Confidence 6777777773 555555544444
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.73 Score=41.94 Aligned_cols=79 Identities=11% Similarity=0.145 Sum_probs=48.2
Q ss_pred HHHHHHHHhccc-ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcH-HHHHHHHhhC-CCcEEEe
Q psy4398 158 CNILTTLISNLS-IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI-EMIRTLTQHL-KIPVIAN 234 (306)
Q Consensus 158 ~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~-~~v~~i~~~~-~ipvia~ 234 (306)
.+.++.+|+... .++.|-+. +..+ +..+.++|+|+|-+..... ..+ +.++.+++.. ++|++++
T Consensus 171 ~~av~~~R~~~~~~~IgVev~------t~ee-a~~A~~~gaD~I~ld~~~p-------~~l~~~~~~~~~~~~~i~i~As 236 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD------SLEE-ALAAAEAGADILQLDKFSP-------EELAELVPKLRSLAPPVLLAAA 236 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC------CHHH-HHHHHHcCCCEEEECCCCH-------HHHHHHHHHHhccCCCceEEEE
Confidence 455666666542 22222222 2233 3334579999999875432 122 3334454443 6999999
Q ss_pred cCCCCHHHHHHHHHhhh
Q psy4398 235 GGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v 251 (306)
||| +++++.++.+.|+
T Consensus 237 GGI-~~~ni~~~~~~Gv 252 (272)
T cd01573 237 GGI-NIENAAAYAAAGA 252 (272)
T ss_pred CCC-CHHHHHHHHHcCC
Confidence 999 6899999988765
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.95 Score=39.42 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=58.9
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCC-cEEEecCCCCHHHHHHHHHh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKI-PVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~i-pvia~GGI~s~~~~~~~l~~ 249 (306)
++..=+|. .+.++..++++.+.+.|+..+-++-++ +...+.++.+++..+. -+|+.|.|.+.++++.+++.
T Consensus 11 ~~~~v~r~-~~~~~~~~~~~a~~~gGi~~iEvt~~~-------~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~a 82 (206)
T PRK09140 11 PLIAILRG-ITPDEALAHVGALIEAGFRAIEIPLNS-------PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADA 82 (206)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHc
Confidence 45555663 467889999999999999999997543 3456788999988865 48999999999999999987
Q ss_pred hh
Q psy4398 250 NC 251 (306)
Q Consensus 250 ~v 251 (306)
++
T Consensus 83 GA 84 (206)
T PRK09140 83 GG 84 (206)
T ss_pred CC
Confidence 54
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.68 Score=41.58 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=78.6
Q ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 97 CPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 97 ~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
.++.|-|++--+. ++.++..+++ .+|.+.+ |+.-|++..++.++ .+.++||..|-
T Consensus 105 ~~~~Gl~vvtEvm--~~~~~e~~~~----y~Dilqv--------------GARNMQNF~LLke~-----G~~~kPvLLKR 159 (286)
T COG2876 105 ADETGLPVVTEVM--DVRDVEAAAE----YADILQV--------------GARNMQNFALLKEV-----GRQNKPVLLKR 159 (286)
T ss_pred HHHcCCeeEEEec--CHHHHHHHHh----hhhHHHh--------------cccchhhhHHHHHh-----cccCCCeEEec
Confidence 3456778887764 3333333333 2444444 45556777665544 24589999999
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEccc---CCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGR---TKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~---~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
..+-+.+++...|+.+...|...+++--| +-+.......++..+..+++.+++|||+.
T Consensus 160 g~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~THLPVivD 220 (286)
T COG2876 160 GLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLPVIVD 220 (286)
T ss_pred CccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhcCCCEEEC
Confidence 98889999999999999999988887543 22222233468889999999999999975
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.94 Score=42.27 Aligned_cols=91 Identities=9% Similarity=-0.018 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcE
Q psy4398 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEAC--GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPV 231 (306)
Q Consensus 154 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~--G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipv 231 (306)
++.-.+.++.+......-+.+ +.|...++ .+-++.|.++ |+|.|++.--. .++. .-++.++.|++...-+.
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~v--svG~~~~d-~er~~~L~~a~~~~d~iviD~Ah---Ghs~-~~i~~ik~ir~~~p~~~ 152 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAV--SSGSSDND-LEKMTSILEAVPQLKFICLDVAN---GYSE-HFVEFVKLVREAFPEHT 152 (343)
T ss_pred HHHHHHHHHhhcccccceEEE--EeccCHHH-HHHHHHHHhcCCCCCEEEEECCC---CcHH-HHHHHHHHHHhhCCCCe
Confidence 343344454443333333344 44444444 4555666666 59999985322 2221 25688999999987677
Q ss_pred EEecCCCCHHHHHHHHHhhh
Q psy4398 232 IANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~v 251 (306)
|..|.|-++++++++++.|+
T Consensus 153 viaGNV~T~e~a~~Li~aGA 172 (343)
T TIGR01305 153 IMAGNVVTGEMVEELILSGA 172 (343)
T ss_pred EEEecccCHHHHHHHHHcCC
Confidence 77899999999999999865
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=92.48 E-value=2.7 Score=36.84 Aligned_cols=113 Identities=13% Similarity=0.106 Sum_probs=77.2
Q ss_pred HHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEec
Q psy4398 158 CNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235 (306)
Q Consensus 158 ~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~G 235 (306)
.+.++++++.++ ..+.+-...+|+.++..++++.+++.++.+|- ++. .+.+++..+++++..++||.+-=
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~L~~~~~~pIa~dE 152 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWIE-------EPC-APDDLEGYAALRRRTGIPIAADE 152 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeEE-------CCC-CccCHHHHHHHHhhCCCCEEeCC
Confidence 677888888874 44555555578999999999999998877774 222 23468888999999999998855
Q ss_pred CCCCHHHHHHHHHhhhhhccccCCCC-Cc---hH-HHHHHHHHhcCCCCC
Q psy4398 236 GSKEIVDYGGVFSLNCAFLRNHYPVE-KL---PK-TILYAHCKYKRFEVP 280 (306)
Q Consensus 236 GI~s~~~~~~~l~~~v~vGrall~~p-~~---~~-~~l~~~~~~~g~~~~ 280 (306)
.+.+..+...+++... ...+.-+| .. .+ +.+.++.+++|++..
T Consensus 153 s~~~~~~~~~~~~~~~--~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~ 200 (229)
T cd00308 153 SVTTVDDALEALELGA--VDILQIKPTRVGGLTESRRAADLAEAFGIRVM 200 (229)
T ss_pred CCCCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCEEe
Confidence 5778888877666422 11111233 11 11 366778889998733
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.40 E-value=2.4 Score=40.07 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=60.0
Q ss_pred ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccC-------CC-------C------------------------CC
Q psy4398 170 IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT-------KA-------E------------------------RP 211 (306)
Q Consensus 170 ~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~-------~~-------~------------------------~~ 211 (306)
-+.+..+....+.+.+.++.++++++|+..|.++--+ ++ . ..
T Consensus 125 ~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (351)
T cd04737 125 GPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAA 204 (351)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhc
Confidence 3566666644455556677777777777766653210 00 0 00
Q ss_pred CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-------hhccccCCCC
Q psy4398 212 RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-------AFLRNHYPVE 261 (306)
Q Consensus 212 ~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-------~vGrall~~p 261 (306)
.....|+.++++++..++||+.- ||.++++++.+.+.|+ .-||.+...|
T Consensus 205 ~~~~~~~~l~~lr~~~~~PvivK-gv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~ 260 (351)
T cd04737 205 KQKLSPADIEFIAKISGLPVIVK-GIQSPEDADVAINAGADGIWVSNHGGRQLDGGP 260 (351)
T ss_pred cCCCCHHHHHHHHHHhCCcEEEe-cCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCc
Confidence 12347899999999999999976 5899999999998865 2366666555
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK01261 aroD 3-dehydroquinate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=2.1 Score=37.88 Aligned_cols=84 Identities=13% Similarity=-0.014 Sum_probs=61.0
Q ss_pred ceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 103 KIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
.+++.|.+.+.++....++.+. .|+|.||+ |-|.+.. .+.+.+.++++.+++. +.|+.+=+|.+ +
T Consensus 22 ~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~---------RlD~l~~---~~~~~~~~~~~~l~~~-~~p~I~T~R~~-~ 87 (229)
T PRK01261 22 IVVESIFFKDIKEMKERFKTKVLSDKNLYEI---------RFDLFHD---HSIESEPEIISALNEM-DIDYIFTYRGV-D 87 (229)
T ss_pred EEEEEeCCCCHHHHHHHHHHhhcCCCCEEEE---------EeeccCC---CChHHHHHHHHHHhhc-CCCEEEEEcCC-C
Confidence 4777999999999887777666 59999999 4444422 3555667887777765 88999999943 2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEc
Q psy4398 182 EADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
+ .++.+.+.+.++|++.+-
T Consensus 88 --~-~~~l~~a~~~~~d~vDIE 106 (229)
T PRK01261 88 --A-RKYYETAIDKMPPAVDLD 106 (229)
T ss_pred --H-HHHHHHHHhhCCCEEEEE
Confidence 2 356666666788999874
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=92.37 E-value=4.6 Score=37.04 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=48.0
Q ss_pred hcccccEEEEeccCCChHHHHHHHHHHHHcC-CcEEEEcccCC--CC-CC--C-CC-CcHHHHHHHHhhCCCcEEEecC
Q psy4398 166 SNLSIPVSCKIRVFHNEADTIALCKRLEACG-IIAIGVHGRTK--AE-RP--R-HR-NRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 166 ~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G-~d~i~v~~~~~--~~-~~--~-~p-~~~~~v~~i~~~~~ipvia~GG 236 (306)
+..+.|+.+-+. |.+.++..+.|+.++++| +|+|.+...-+ .. .+ . .+ ...+.++.+++.+++||+.=-.
T Consensus 88 ~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 88 EEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred hccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 344788888775 357788999999999999 99998843211 11 11 1 11 2357788888888999987433
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=1 Score=42.02 Aligned_cols=91 Identities=7% Similarity=-0.047 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcE
Q psy4398 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEA-CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPV 231 (306)
Q Consensus 154 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~-~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipv 231 (306)
++.-.+.++.++.....-+.| +.|...++...+.+.++. +|+|.|++.--. .++. .-++.++.|++.+ +++|
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~~d~er~~~L~~~~~g~D~iviD~Ah---Ghs~-~~i~~ik~ik~~~P~~~v 154 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSDADFEKTKQILALSPALNFICIDVAN---GYSE-HFVQFVAKAREAWPDKTI 154 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCHHHHHHHHHHHhcCCCCCEEEEECCC---CcHH-HHHHHHHHHHHhCCCCcE
Confidence 444455555555443323334 444555555444444442 699999985322 2221 2568899999998 5664
Q ss_pred EEecCCCCHHHHHHHHHhhh
Q psy4398 232 IANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~v 251 (306)
..|.|-|.+.+++++.+|+
T Consensus 155 -IaGNV~T~e~a~~Li~aGA 173 (346)
T PRK05096 155 -CAGNVVTGEMVEELILSGA 173 (346)
T ss_pred -EEecccCHHHHHHHHHcCC
Confidence 5688999999999999865
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=4.7 Score=35.18 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=75.0
Q ss_pred ceEEEecCC----CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 103 KIILQIGTA----DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 103 p~ivql~g~----~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.+-+|.... ++++..+.++.+.. |+.+++++ . .+.++++++.+++|+....+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~-------------------~----~~~i~~i~~~~~~Pil~~~~ 64 (221)
T PRK01130 8 IVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRAN-------------------G----VEDIKAIRAVVDVPIIGIIK 64 (221)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC-------------------C----HHHHHHHHHhCCCCEEEEEe
Confidence 455565533 34667777776654 88888873 0 35678888888899874443
Q ss_pred cC-CC--h--HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 178 VF-HN--E--ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 178 ~g-~~--~--~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.. ++ . ....+.++.+.++|+|.|.+...... ...+....++++.+++..++|++. ++.+.+++..+.+.|+
T Consensus 65 ~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~-~p~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~~~G~ 140 (221)
T PRK01130 65 RDYPDSEVYITPTLKEVDALAAAGADIIALDATLRP-RPDGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQKLGF 140 (221)
T ss_pred cCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHHcCC
Confidence 11 00 0 11235678889999998877543211 010012345667776645677774 5678999888777665
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.74 Score=41.24 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVEK 262 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p~ 262 (306)
+..++|+.++++|+++|.|-. ++.+-+ .+++.++++++.+++||+.-+.|.++.+..++...|+ ++ ++-=..
T Consensus 62 d~~~~A~~y~~~GA~aISVlT---e~~~F~-Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADav---LLI~~~ 134 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLT---DQSYFG-GSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAI---LLIVRI 134 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEc---CCCcCC-CCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEE---EeEHhh
Confidence 578999999999999997642 222222 3789999999999999999999999999999888765 21 111111
Q ss_pred c-h-H-HHHHHHHHhcCCC-CCcceehh
Q psy4398 263 L-P-K-TILYAHCKYKRFE-VPKYETVQ 286 (306)
Q Consensus 263 ~-~-~-~~l~~~~~~~g~~-~~~~~~~~ 286 (306)
+ + + ..+-+.....|++ +.+.|+..
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~ 162 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTED 162 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHH
Confidence 1 1 2 2677777888877 55555444
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.17 E-value=1.4 Score=41.12 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=62.9
Q ss_pred cCChHHHHHHHHHHHhccc-ccEEEEeccCC-ChHHHHHHHHHHHHcCCcEEEEcccCC--CCCCCCCCcH----HHHHH
Q psy4398 151 LSTPDIACNILTTLISNLS-IPVSCKIRVFH-NEADTIALCKRLEACGIIAIGVHGRTK--AERPRHRNRI----EMIRT 222 (306)
Q Consensus 151 ~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~-~~~~~~~~a~~l~~~G~d~i~v~~~~~--~~~~~~p~~~----~~v~~ 222 (306)
..+++.. +-++.+|+... .|+.+-+.... ...+..++.+..+..++|++.+|-... ...+.++.++ +.++.
T Consensus 94 ~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~ 172 (326)
T cd02811 94 LEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEE 172 (326)
T ss_pred ccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHH
Confidence 4467755 66677777664 88888776421 011344455556666788888764321 1112223344 56788
Q ss_pred HHhhCCCcEEE--ecCCCCHHHHHHHHHhhh
Q psy4398 223 LTQHLKIPVIA--NGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 223 i~~~~~ipvia--~GGI~s~~~~~~~l~~~v 251 (306)
+++.+++||+. +|--.+.++++.+.+.|+
T Consensus 173 l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gv 203 (326)
T cd02811 173 LVKALSVPVIVKEVGFGISRETAKRLADAGV 203 (326)
T ss_pred HHHhcCCCEEEEecCCCCCHHHHHHHHHcCC
Confidence 88888999998 354477899988888765
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=92.11 E-value=2.9 Score=39.10 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
+.+++.|++.+-|..+.. .++++++.+.+. +.|||.+-|..++++++.+++..
T Consensus 104 d~l~~~~v~~~KI~S~~~-------~n~~LL~~va~~-gkPvilstG~~t~~Ei~~Av~~i 156 (327)
T TIGR03586 104 DFLESLDVPAYKIASFEI-------TDLPLIRYVAKT-GKPIIMSTGIATLEEIQEAVEAC 156 (327)
T ss_pred HHHHHcCCCEEEECCccc-------cCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHHH
Confidence 456678899888865532 478899998865 89999999999999999988764
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=6.4 Score=35.70 Aligned_cols=117 Identities=12% Similarity=0.188 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+.+.+.+.|+.+++ |+..+-...--|-++. ..| ..-.+.-.++++.+.+..++|+..-+- +. .-+
T Consensus 38 e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~--~s~----~G~g~~gl~~l~~~~~~~Gl~~~te~~---d~----~~~ 104 (266)
T PRK13398 38 ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSP--YSF----QGLGEEGLKILKEVGDKYNLPVVTEVM---DT----RDV 104 (266)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCC--Ccc----CCcHHHHHHHHHHHHHHcCCCEEEeeC---Ch----hhH
Confidence 367888999998876 8776666543333211 111 111133344566666778999887665 22 233
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC-CHHHHHHHHHh
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK-EIVDYGGVFSL 249 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~-s~~~~~~~l~~ 249 (306)
+.+.+. +|.+-|-+++. .+.++++++. .++.||+..-|.. +++++..+.+.
T Consensus 105 ~~l~~~-vd~~kIga~~~-------~n~~LL~~~a-~~gkPV~lk~G~~~s~~e~~~A~e~ 156 (266)
T PRK13398 105 EEVADY-ADMLQIGSRNM-------QNFELLKEVG-KTKKPILLKRGMSATLEEWLYAAEY 156 (266)
T ss_pred HHHHHh-CCEEEECcccc-------cCHHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 344556 89999877653 3567888885 5689999999988 99999888875
|
|
| >PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.4 Score=39.97 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=74.3
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.+.|.|++--+. ++++...++ +.+|.+.| |+.++++.++ ++++. .++.||.+|-.
T Consensus 84 ~~~glpvvTeV~--~~~q~~~va----e~~DilQI--------------gAr~~rqtdL----L~a~~-~tgkpV~lKkG 138 (290)
T PLN03033 84 VAYDLPIVTDVH--ESSQCEAVG----KVADIIQI--------------PAFLCRQTDL----LVAAA-KTGKIINIKKG 138 (290)
T ss_pred HHHCCceEEeeC--CHHHHHHHH----hhCcEEee--------------CcHHHHHHHH----HHHHH-ccCCeEEeCCC
Confidence 345777776663 333333333 34688888 4455555554 44443 36899999999
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-CCcHHHHHHHHhhCCCcEEE
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH-RNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p~~~~~v~~i~~~~~ipvia 233 (306)
...+++++...++.+...|-+-|.+.-|-..-.|.. ..++..+..+++ +++|||.
T Consensus 139 q~~t~~e~~~aaeki~~~GN~~viLcERG~tFgy~~lv~D~r~ip~mk~-~~lPVI~ 194 (290)
T PLN03033 139 QFCAPSVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVA 194 (290)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHh-cCCCEEE
Confidence 888999999999999999999998876643223322 246667777774 6899985
|
|
| >cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria | Back alignment and domain information |
|---|
Probab=91.98 E-value=2.9 Score=40.40 Aligned_cols=96 Identities=8% Similarity=-0.005 Sum_probs=66.7
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEE--EccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAID--INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~ve--ln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++++..+.. |.|.|- =|+..|.. .-+.+|.+.+.+.+++..+.++...
T Consensus 158 ~~RPL~gtiiKPklGLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f--------~p~~eRv~~~~~ai~~a~~eTG~~~ 229 (424)
T cd08208 158 HDRPIFFGVIKPNIGLPPGEFAELGYQSWLGGLDIAKDDEMLADVDW--------CPLEERAALLGKARRRAEAETGVPK 229 (424)
T ss_pred CCCCeeeeeecccccCCHHHHHHHHHHHHcCCcccccccccccCCCC--------CCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5678888875 6789999998887765 667652 13433221 2345677788888888888887554
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+-++.+.+.|+.++.+.
T Consensus 230 ~ya~NiT~~~~em~~ra~~a~~~G~~~vmv~ 260 (424)
T cd08208 230 IYLANITDEVDRLMELHDVAVRNGANALLIN 260 (424)
T ss_pred eEEEEccCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 4333332467889999999999999988764
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=6.3 Score=34.34 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=65.2
Q ss_pred EEEecCCC-HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChH
Q psy4398 105 ILQIGTAD-PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA 183 (306)
Q Consensus 105 ivql~g~~-~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~ 183 (306)
.++|+|-. +++.. ...+.|+|.+-+.+..+++. + =.++.+.++.+.+...+ .+|.|-.. .+
T Consensus 4 ~vKICGi~~~eda~---~~~~~Gad~iGfI~~~~S~R-----~-----V~~~~a~~i~~~~~~~i-~~VgVf~~--~~-- 65 (210)
T PRK01222 4 RVKICGITTPEDAE---AAAELGADAIGFVFYPKSPR-----Y-----VSPEQAAELAAALPPFV-KVVGVFVN--AS-- 65 (210)
T ss_pred eEEECCCCcHHHHH---HHHHcCCCEEEEccCCCCCC-----c-----CCHHHHHHHHHhCCCCC-CEEEEEeC--CC--
Confidence 47888864 43322 22345999998865433321 1 24666677766654322 34444444 33
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHH
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~ 243 (306)
..++.+.+++.+.|.|.+|+.. ..++++.+++..+++||-+=.+.+..+.
T Consensus 66 -~~~i~~~~~~~~~d~vQLHg~e---------~~~~~~~l~~~~~~~iik~i~v~~~~~l 115 (210)
T PRK01222 66 -DEEIDEIVETVPLDLLQLHGDE---------TPEFCRQLKRRYGLPVIKALRVRSAGDL 115 (210)
T ss_pred -HHHHHHHHHhcCCCEEEECCCC---------CHHHHHHHHhhcCCcEEEEEecCCHHHH
Confidence 4456666778999999999732 3356677777666776655555444333
|
|
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=2.1 Score=38.51 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=75.4
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.+.|.|++--+. ++++...++ +.+|.++| |+.++++.++ ++++.+ ++.||.+|-.
T Consensus 78 ~~~GlpvvTeV~--~~~~~~~v~----~~~DilQI--------------gArn~rn~~L----L~a~g~-t~kpV~lKrG 132 (264)
T PRK05198 78 ETFGVPVLTDVH--EPEQAAPVA----EVVDVLQI--------------PAFLCRQTDL----LVAAAK-TGKVVNIKKG 132 (264)
T ss_pred HHHCCceEEEeC--CHHHHHHHH----hhCcEEEE--------------CchhcchHHH----HHHHhc-cCCeEEecCC
Confidence 456778877663 333333333 35789888 4556666554 455443 5899999999
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-CCcHHHHHHHHhhCCCcEEE
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH-RNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p~~~~~v~~i~~~~~ipvia 233 (306)
.+.+++++...++.+...|-.-|.+.-|-..-.|.. ..++..+..+++ .++|||.
T Consensus 133 ~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~~k~-~~lPVi~ 188 (264)
T PRK05198 133 QFLAPWDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMRE-TGAPVIF 188 (264)
T ss_pred CcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhhhHHHhh-CCCCEEE
Confidence 888899999999999999999998866543222322 246667777776 4599986
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.89 E-value=2.3 Score=40.70 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=31.9
Q ss_pred CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 215 NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 215 ~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+|+.++++++.+++|||.- ||.+.+|++.+++.|+
T Consensus 240 ~tW~~i~~lr~~~~~pvivK-gV~~~~dA~~a~~~G~ 275 (383)
T cd03332 240 LTWEDLAFLREWTDLPIVLK-GILHPDDARRAVEAGV 275 (383)
T ss_pred CCHHHHHHHHHhcCCCEEEe-cCCCHHHHHHHHHCCC
Confidence 57899999999999998865 7899999999999876
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.4 Score=36.62 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHH
Q psy4398 114 ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL 192 (306)
Q Consensus 114 ~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l 192 (306)
+...+.++.+.+ |++.|++-..-+.+.. .. ...+ +.++.+++..+.|+.+.+......+.....++.+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~----~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEE----AE---TDDK----EVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECccc----CC---Cccc----cHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 556666666665 8999888543222100 00 0011 4455556666889888887433222233446788
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecC
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGG 236 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GG 236 (306)
.++|+|+|.++...... .....+.++.+++.+ ++|++..-.
T Consensus 81 ~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~~~~~v~~~~~ 122 (200)
T cd04722 81 RAAGADGVEIHGAVGYL---AREDLELIRELREAVPDVKVVVKLS 122 (200)
T ss_pred HHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhcCCceEEEEEC
Confidence 99999999998653211 011356788999887 788776654
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=91.87 E-value=2.9 Score=36.30 Aligned_cols=118 Identities=12% Similarity=0.146 Sum_probs=66.2
Q ss_pred CCHHHHHHHHH---HHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAK---KVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~---~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~ 186 (306)
++.+++....+ .++ .|+|++-+-+-.|.. . =|.+.+.+++++.+ +.|+..=.. .....+..
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg---------~--iD~~~~~~Li~~a~---~~~~tFHRA-fD~~~d~~ 130 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTEDG---------E--IDEEALEELIEAAG---GMPVTFHRA-FDEVPDPE 130 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETTS---------S--B-HHHHHHHHHHHT---TSEEEE-GG-GGGSSTHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCC---------C--cCHHHHHHHHHhcC---CCeEEEeCc-HHHhCCHH
Confidence 56666655543 444 399999985443331 1 26677777777764 556665333 22223455
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~ 248 (306)
+-.+.+.+.|++.|--+|... .-..+++.++++.+.. ++.|++.|||+ .+++.++++
T Consensus 131 ~al~~L~~lG~~rVLTSGg~~----~a~~g~~~L~~lv~~a~~~i~Im~GgGv~-~~nv~~l~~ 189 (201)
T PF03932_consen 131 EALEQLIELGFDRVLTSGGAP----TALEGIENLKELVEQAKGRIEIMPGGGVR-AENVPELVE 189 (201)
T ss_dssp HHHHHHHHHT-SEEEESTTSS----STTTCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHH
T ss_pred HHHHHHHhcCCCEEECCCCCC----CHHHHHHHHHHHHHHcCCCcEEEecCCCC-HHHHHHHHH
Confidence 666777788999997776531 1123567777665554 68899999987 455666655
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.85 E-value=5.2 Score=37.53 Aligned_cols=113 Identities=14% Similarity=0.268 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHhc-CCCEEEE----ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHH
Q psy4398 112 DPERALEAAKKVEH-DVAAIDI----NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 112 ~~~~~~~aa~~~~~-g~d~vel----n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~ 186 (306)
+.+++.+.|+.+++ |++.+-- |=.+|... .+.| +.-.+++..+++..++|+..-+- +.
T Consensus 105 s~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf---~G~g-------~~gL~~L~~~~~~~Gl~v~tev~---d~---- 167 (335)
T PRK08673 105 SEEQILEIARAVKEAGAQILRGGAFKPRTSPYSF---QGLG-------EEGLKLLAEAREETGLPIVTEVM---DP---- 167 (335)
T ss_pred CHHHHHHHHHHHHHhchhhccCcEecCCCCCccc---cccc-------HHHHHHHHHHHHHcCCcEEEeeC---CH----
Confidence 57888999998875 7663221 11222211 1222 33445777888888999887666 22
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC-CHHHHHHHHHhh
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK-EIVDYGGVFSLN 250 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~-s~~~~~~~l~~~ 250 (306)
+-++.+.+. +|.+.|-++.. .++++++++.+ ++.||+..-|.. +++++..+.+..
T Consensus 168 ~~~~~l~~~-vd~lqIgAr~~-------~N~~LL~~va~-~~kPViLk~G~~~ti~E~l~A~e~i 223 (335)
T PRK08673 168 RDVELVAEY-VDILQIGARNM-------QNFDLLKEVGK-TNKPVLLKRGMSATIEEWLMAAEYI 223 (335)
T ss_pred HHHHHHHHh-CCeEEECcccc-------cCHHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 223344456 89999977653 36778888875 589999999988 999998888763
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.9 Score=41.21 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc--ccC----CCCCCCCCCcHHHH----HHH
Q psy4398 155 DIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH--GRT----KAERPRHRNRIEMI----RTL 223 (306)
Q Consensus 155 ~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~--~~~----~~~~~~~p~~~~~v----~~i 223 (306)
+...+-++.+++.. ++|+++-+..+.+.+++.++++.++++|+|+|.+. +.. +.....--.+.+.+ +.+
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~V 177 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWI 177 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHH
Confidence 33333356666666 67999988654678999999999999999999862 221 11110000133444 566
Q ss_pred HhhCCCcEEEe--cCCCCHHHHHH
Q psy4398 224 TQHLKIPVIAN--GGSKEIVDYGG 245 (306)
Q Consensus 224 ~~~~~ipvia~--GGI~s~~~~~~ 245 (306)
++.+++||+.= -.+.++....+
T Consensus 178 k~~~~iPv~vKLsPn~t~i~~ia~ 201 (385)
T PLN02495 178 NAKATVPVWAKMTPNITDITQPAR 201 (385)
T ss_pred HHhhcCceEEEeCCChhhHHHHHH
Confidence 77778998764 34445544444
|
|
| >PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.6 Score=30.48 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=46.2
Q ss_pred HHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 161 LTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 161 v~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
++++++.+ ++.+.+-...+|+.+++.++++.+++. ..+ +++. .+.+++..+++++.+++||.+
T Consensus 2 i~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~--~~i-------EeP~-~~~d~~~~~~l~~~~~~pia~ 66 (67)
T PF01188_consen 2 IRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY--EWI-------EEPL-PPDDLDGLAELRQQTSVPIAA 66 (67)
T ss_dssp HHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG--SEE-------ESSS-STTSHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh--hee-------ecCC-CCCCHHHHHHHHHhCCCCEEe
Confidence 56777776 456666666689999999999999983 333 2222 235789999999999999975
|
1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C .... |
| >PRK07534 methionine synthase I; Validated | Back alignment and domain information |
|---|
Probab=91.58 E-value=2.4 Score=39.80 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=59.7
Q ss_pred HcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec---------CCCHHHHHHHHHH
Q psy4398 52 DYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG---------TADPERALEAAKK 122 (306)
Q Consensus 52 ~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~---------g~~~~~~~~aa~~ 122 (306)
+.|++++.-|++..-.-..... ...++.+.|+++|+. |.+.++..+++..
T Consensus 142 ~~gvD~l~~ET~p~l~E~~a~~---------------------~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~ 200 (336)
T PRK07534 142 AGGADVLWVETISAPEEIRAAA---------------------EAAKLAGMPWCGTMSFDTAGRTMMGLTPADLADLVEK 200 (336)
T ss_pred hCCCCEEEEeccCCHHHHHHHH---------------------HHHHHcCCeEEEEEEECCCCeeCCCCcHHHHHHHHHh
Confidence 6789999999886432111100 011112457777763 3334444444332
Q ss_pred HhcCCCEEEEccCC-CccccccCCccccccCChHHH-HHHHHHHHhcccccEEEEeccCC------------ChHHHHHH
Q psy4398 123 VEHDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIA-CNILTTLISNLSIPVSCKIRVFH------------NEADTIAL 188 (306)
Q Consensus 123 ~~~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~-~eiv~~v~~~~~~pv~vKir~g~------------~~~~~~~~ 188 (306)
...++++|-+||+. |. .+ ..+++.....++.|+.|+-..|. +.+...++
T Consensus 201 ~~~~~~avGvNC~~gp~-----------------~~~~~l~~~~~~~~~~pl~vyPNaG~p~~~~~~~~~~~~p~~~~~~ 263 (336)
T PRK07534 201 LGEPPLAFGANCGVGAS-----------------DLLRTVLGFTAQGPERPIIAKGNAGIPKYVDGHIHYDGTPELMAEY 263 (336)
T ss_pred cCCCceEEEecCCCCHH-----------------HHHHHHHHHHHhcCCCeEEEEcCCCCcccCCCccccCCCHHHHHHH
Confidence 22245999999886 43 22 22233334444678888766542 22335556
Q ss_pred HHHHHHcCCcEEE
Q psy4398 189 CKRLEACGIIAIG 201 (306)
Q Consensus 189 a~~l~~~G~d~i~ 201 (306)
++.+.+.|+..|-
T Consensus 264 ~~~~~~~Ga~iIG 276 (336)
T PRK07534 264 AVLARDAGARIIG 276 (336)
T ss_pred HHHHHHcCCcEEe
Confidence 6666666666654
|
|
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.89 Score=38.17 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
|......-.+.+++.++|+|-+-+. ..-..++++.+++++||||.|=|.+.+++++++++|+
T Consensus 106 DS~Al~~~~~~i~~~~pD~iEvLPG---------v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA 167 (181)
T COG1954 106 DSIALEKGIKQIEKSEPDFIEVLPG---------VMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGA 167 (181)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCc---------ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCc
Confidence 3344556667778889999987532 2237889999999999999999999999999999976
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.54 E-value=5.8 Score=35.89 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCCceEEEec---CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccE
Q psy4398 99 REKNKIILQIG---TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPV 172 (306)
Q Consensus 99 ~~~~p~ivql~---g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv 172 (306)
+.|..+.+++. ..+++.+.+.++.+.+ |++.|-|- |-.|. -.|+.+.++++++++.++ +|+
T Consensus 120 ~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~----------DT~G~---~~P~~v~~lv~~l~~~~~~~~~i 186 (266)
T cd07944 120 EKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV----------DSFGS---MYPEDIKRIISLLRSNLDKDIKL 186 (266)
T ss_pred HCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe----------cCCCC---CCHHHHHHHHHHHHHhcCCCceE
Confidence 34556666653 4678889999888765 89987772 44553 379999999999998876 666
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
.+=.- .+..-...-+..+.++|++.|..+
T Consensus 187 ~~H~H--n~~Gla~AN~laA~~aGa~~vd~s 215 (266)
T cd07944 187 GFHAH--NNLQLALANTLEAIELGVEIIDAT 215 (266)
T ss_pred EEEeC--CCccHHHHHHHHHHHcCCCEEEEe
Confidence 55544 343334444455567999998865
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain | Back alignment and domain information |
|---|
Probab=91.43 E-value=4 Score=38.74 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=76.8
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= ++..+. | .-+.+|...+.+.+++..+.++...
T Consensus 125 ~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~-------~-~p~~eRv~~~~~a~~~a~~eTG~~~ 196 (366)
T cd08148 125 YGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIKDDETLTDQP-------F-CPLRDRITEVAAALDRVQEETGEKK 196 (366)
T ss_pred CCCceeEeecccccCCCHHHHHHHHHHHHhCCCCccccccccCCCC-------C-CcHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5779988874 7789999999887765 7776522 233222 1 2344566777777888777776554
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh--CCCcEEEe
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH--LKIPVIAN 234 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~--~~ipvia~ 234 (306)
..-..+..+.++..+=++.+.+.|+.++.+.... .-+..+..+++. .++||.+.
T Consensus 197 ~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~--------~G~~~l~~l~~~~~~~l~IhaH 252 (366)
T cd08148 197 LYAVNVTAGTFEIIERAERALELGANMLMVDVLT--------AGFSALQALAEDFEIDLPIHVH 252 (366)
T ss_pred eEEEEccCCHHHHHHHHHHHHHhCCCEEEEeccc--------cchHHHHHHHHhCcCCcEEEec
Confidence 4333332555789999999999999998875432 233445555552 35666553
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=91.35 E-value=4.9 Score=34.30 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=74.7
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEE--EeccCC
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSC--KIRVFH 180 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~v--Kir~g~ 180 (306)
+++-|--.++++..+.++.+.++++.||++... - . .+| .+.++.+++. .+.|+.+ |+.
T Consensus 3 ~~~a~d~~~~~~~~~~~~~l~~~i~~ieig~~~--~--~--~~g----------~~~i~~i~~~~~~~~i~~~~~v~--- 63 (202)
T cd04726 3 LQVALDLLDLEEALELAKKVPDGVDIIEAGTPL--I--K--SEG----------MEAVRALREAFPDKIIVADLKTA--- 63 (202)
T ss_pred eEEEEcCCCHHHHHHHHHHhhhcCCEEEcCCHH--H--H--HhC----------HHHHHHHHHHCCCCEEEEEEEec---
Confidence 445555567788888888887779999994221 0 0 111 4567777765 3677776 444
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcH-HHHHHHHhhCCCcEEEe-cCCCCHHHHHHHHHhhh
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI-EMIRTLTQHLKIPVIAN-GGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~-~~v~~i~~~~~ipvia~-GGI~s~~~~~~~l~~~v 251 (306)
+.. ..+++.+.++|+|.+++|+... +... ++++.+++ .+++++.. =+..|.++...+...++
T Consensus 64 ~~~--~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~ 127 (202)
T cd04726 64 DAG--ALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGV 127 (202)
T ss_pred ccc--HHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCC
Confidence 111 2456888899999999997531 1112 34455553 47777653 56677887777666443
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=91.33 E-value=9.8 Score=33.60 Aligned_cols=133 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEEeccCCChHHHH--
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCKIRVFHNEADTI-- 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~g~~~~~~~-- 186 (306)
++++..+.+.+ .+.|+|.+-+|... ..+.+.+..+..++ .-+.-+.|=+=..++.++..
T Consensus 66 ~~t~~~~i~~~--~~~gad~itvH~~a----------------g~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~ 127 (230)
T PRK00230 66 PNTVAKAVRAL--AKLGVDMVNVHASG----------------GPRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAEL 127 (230)
T ss_pred cccHHHHHHHH--HHcCCCEEEEcccC----------------CHHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhC
Q ss_pred -----------HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHH-----------HH
Q psy4398 187 -----------ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIV-----------DY 243 (306)
Q Consensus 187 -----------~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~-----------~~ 243 (306)
.+++...+.|+|++.+ .......+++.. .-.++.++||+ ++ +.
T Consensus 128 ~~~~~~~~~v~~~a~~a~~~g~dgvv~-------------~~~~~~~ir~~~~~~~~~v~pGI~-~~g~~~~dq~~~~~~ 193 (230)
T PRK00230 128 GINLSLEEQVLRLAKLAQEAGLDGVVC-------------SAQEAAAIREATGPDFLLVTPGIR-PAGSDAGDQKRVMTP 193 (230)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCeEEEe-------------ChHHHHHHHhhcCCceEEEcCCcC-CCCCCcchHHHHhCH
Q ss_pred HHHHHhhh---hhccccCCCCCchHH--HHHHHHHh
Q psy4398 244 GGVFSLNC---AFLRNHYPVEKLPKT--ILYAHCKY 274 (306)
Q Consensus 244 ~~~l~~~v---~vGrall~~p~~~~~--~l~~~~~~ 274 (306)
.++++.++ .+||+++..+.-.+. .+.+-+..
T Consensus 194 ~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~~ 229 (230)
T PRK00230 194 AQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIAG 229 (230)
T ss_pred HHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhhc
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=91.33 E-value=3.2 Score=37.34 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=66.9
Q ss_pred HHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc-EEEEeccC---CChHHHHHHH-HHH
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP-VSCKIRVF---HNEADTIALC-KRL 192 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir~g---~~~~~~~~~a-~~l 192 (306)
.|+.+++ |+|.|= .|....... -++-....-..+.....+++|++.++.| |.+-+.-| .+.++.++-+ +.+
T Consensus 24 sA~l~e~aG~d~i~--vGds~~~~~-lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~ 100 (254)
T cd06557 24 TAKLADEAGVDVIL--VGDSLGMVV-LGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLM 100 (254)
T ss_pred HHHHHHHcCCCEEE--ECHHHHHHH-cCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHH
Confidence 3455554 999994 342221111 1221122235566777788888888888 66666522 2356655554 555
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE-----------EecCCC----CHHHHHHHHHh
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI-----------ANGGSK----EIVDYGGVFSL 249 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi-----------a~GGI~----s~~~~~~~l~~ 249 (306)
+++|+++|.+-+.. ...+.++.+.++ ++||+ ..||.. +.+.++++++.
T Consensus 101 ~~aGa~aVkiEd~~--------~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~r 163 (254)
T cd06557 101 KEAGADAVKLEGGA--------EVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLED 163 (254)
T ss_pred HHhCCeEEEEcCcH--------HHHHHHHHHHHc-CCCeeccccccceeeeccCCceeccCCHHHHHHHHHH
Confidence 55999999997631 122344444432 79988 456532 45446666654
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=91.30 E-value=5.5 Score=36.17 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=59.9
Q ss_pred CCCCceEEEec-----CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 99 REKNKIILQIG-----TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 99 ~~~~p~ivql~-----g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
+.|..+.+.+. ..+++.+.+.++.+.+ |+|.|-|- |-.|.. .|+.+.++++.+++.+++|+
T Consensus 129 ~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~----------DT~G~~---~P~~v~~lv~~l~~~~~~~l 195 (275)
T cd07937 129 KAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK----------DMAGLL---TPYAAYELVKALKKEVGLPI 195 (275)
T ss_pred HCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc----------CCCCCC---CHHHHHHHHHHHHHhCCCeE
Confidence 34544444442 3567888888887765 99988772 445543 59999999999999887666
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.+=.- .+..-...-+-.+.++|++.|..+-
T Consensus 196 ~~H~H--nd~GlA~aN~laA~~aGa~~vd~sv 225 (275)
T cd07937 196 HLHTH--DTSGLAVATYLAAAEAGVDIVDTAI 225 (275)
T ss_pred EEEec--CCCChHHHHHHHHHHhCCCEEEEec
Confidence 55444 3333334444444568999998653
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >KOG3111|consensus | Back alignment and domain information |
|---|
Probab=91.25 E-value=2.9 Score=35.89 Aligned_cols=143 Identities=9% Similarity=0.057 Sum_probs=79.7
Q ss_pred ceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 103 KIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
.+..+|...+-...++-.+++ ..|+|-+-+..- -+.+..+.-+---+++++|+..+.+-+.-+- .-
T Consensus 6 ~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVM-----------Dg~FVpNiT~G~pvV~slR~~~~~~~ffD~H--mM 72 (224)
T KOG3111|consen 6 KIAPSILSSDFANLAAECKKMLDAGADWLHLDVM-----------DGHFVPNITFGPPVVESLRKHTGADPFFDVH--MM 72 (224)
T ss_pred eechhhhccchHHHHHHHHHHHHcCCCeEEEeee-----------cccccCCcccchHHHHHHHhccCCCcceeEE--Ee
Confidence 344555555544444433434 459998777532 1112222222234788888887766333333 11
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccC--------------------------C-------------------CCCCCCC--
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRT--------------------------K-------------------AERPRHR-- 214 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~--------------------------~-------------------~~~~~~p-- 214 (306)
.++..+++..+.++|++.+++|--. . +.++.+.
T Consensus 73 V~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkF 152 (224)
T KOG3111|consen 73 VENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKF 152 (224)
T ss_pred ecCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhh
Confidence 2344566677777888888776311 0 1111111
Q ss_pred --CcHHHHHHHHhhCCCcEE-EecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 215 --NRIEMIRTLTQHLKIPVI-ANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 215 --~~~~~v~~i~~~~~ipvi-a~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.-+.-++.+|+...-+.| .-||+. ++++..+.++|+ ..|++.+.
T Consensus 153 me~mm~KV~~lR~kyp~l~ievDGGv~-~~ti~~~a~AGAN~iVaGsavf~ 202 (224)
T KOG3111|consen 153 MEDMMPKVEWLREKYPNLDIEVDGGVG-PSTIDKAAEAGANMIVAGSAVFG 202 (224)
T ss_pred HHHHHHHHHHHHHhCCCceEEecCCcC-cchHHHHHHcCCCEEEecceeec
Confidence 124456777877754555 778876 677777777654 88999886
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.21 E-value=7.9 Score=36.57 Aligned_cols=114 Identities=15% Similarity=0.207 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHhc-CCCEEEE----ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHH
Q psy4398 112 DPERALEAAKKVEH-DVAAIDI----NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 112 ~~~~~~~aa~~~~~-g~d~vel----n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~ 186 (306)
+.++..+.|+.+++ |+..+-= |=.+|..+ ..--+.-.++++++++..++|+..-+- +.+ .+
T Consensus 113 s~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf----------~G~g~~gl~~L~~~~~e~Gl~~~tev~---d~~-~v 178 (352)
T PRK13396 113 NEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAF----------QGHGESALELLAAAREATGLGIITEVM---DAA-DL 178 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeeecCCCCCccc----------CCchHHHHHHHHHHHHHcCCcEEEeeC---CHH-HH
Confidence 46788888888875 6554331 22233221 111245577888889999999886665 322 23
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC-CHHHHHHHHHhhh
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK-EIVDYGGVFSLNC 251 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~-s~~~~~~~l~~~v 251 (306)
+.+.+. +|.+.|-++.. .|+++++++.+ ++.||+..-|.. |++++..+++...
T Consensus 179 ---~~~~~~-~d~lqIga~~~-------~n~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~ 232 (352)
T PRK13396 179 ---EKIAEV-ADVIQVGARNM-------QNFSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYIL 232 (352)
T ss_pred ---HHHHhh-CCeEEECcccc-------cCHHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 333445 89999977653 36788888885 489999999999 9999999888743
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=2 Score=39.23 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcH-HHHHHHHhh---CCCcE
Q psy4398 157 ACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI-EMIRTLTQH---LKIPV 231 (306)
Q Consensus 157 ~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~-~~v~~i~~~---~~ipv 231 (306)
+.+.++.+|+.. ..+|.|-+. ..+-+..+.++|+|.|.+...+ |..+ +.++.+++. -++.+
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~-------~leea~~a~~agaDiI~LDn~~-------~e~l~~~v~~l~~~~~~~~~~l 234 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVE-------SLEDALKAAKAGADIIMLDNMT-------PEEIREVIEALKREGLRERVKI 234 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeC-------CHHHHHHHHHcCcCEEEECCCC-------HHHHHHHHHHHHhcCcCCCEEE
Confidence 455566666544 355666666 3444555567999999887653 2222 223334332 25789
Q ss_pred EEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 232 IANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.++||| ++++++++.+.|+ .+|...+
T Consensus 235 eaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 235 EVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred EEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 999999 6999999988876 5555444
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=90.98 E-value=3.6 Score=36.23 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=62.5
Q ss_pred CCCCceEEEec---CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEE
Q psy4398 99 REKNKIILQIG---TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVS 173 (306)
Q Consensus 99 ~~~~p~ivql~---g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~ 173 (306)
+.+..+.+++- ..+++.+.+.++.+.+ |+|.|-|- |..|. -.|..+.++++.+++.++ +|+.
T Consensus 119 ~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~----------Dt~G~---~~P~~v~~lv~~~~~~~~~~~l~ 185 (237)
T PF00682_consen 119 ELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA----------DTVGI---MTPEDVAELVRALREALPDIPLG 185 (237)
T ss_dssp HTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE----------ETTS----S-HHHHHHHHHHHHHHSTTSEEE
T ss_pred hcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee----------CccCC---cCHHHHHHHHHHHHHhccCCeEE
Confidence 34555666653 4578999999998875 99999883 44453 379999999999999987 7777
Q ss_pred EEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 174 CKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 174 vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
+-.. .+..-...-+-...++|++.|..+-
T Consensus 186 ~H~H--nd~Gla~An~laA~~aGa~~id~t~ 214 (237)
T PF00682_consen 186 FHAH--NDLGLAVANALAALEAGADRIDGTL 214 (237)
T ss_dssp EEEB--BTTS-HHHHHHHHHHTT-SEEEEBG
T ss_pred EEec--CCccchhHHHHHHHHcCCCEEEccC
Confidence 7777 3433344445555679999998753
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.4 Score=40.28 Aligned_cols=62 Identities=10% Similarity=0.115 Sum_probs=37.1
Q ss_pred CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 112 DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 112 ~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
+++...+-|. .+++|+|.|||+.-+-.+... . -...+..+.+..+++++++..++||+|-..
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~--~--v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~ 98 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAA--E--VSVEEELDRVIPVVEAIAQRFEVWISVDTS 98 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCC--C--CCHHHHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 4555554444 446799999998665322110 0 011223345677888888777888887655
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=90.83 E-value=4.7 Score=36.01 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=55.7
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-ChHHHHHHHHHHHHcCC
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-NEADTIALCKRLEACGI 197 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-~~~~~~~~a~~l~~~G~ 197 (306)
|+.++. |||++=+-=+.-.. ..++-..-.-..+...+.++.|...+..|+++-+..|. +.++..+.++.+.++|+
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~---s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~ 98 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAA---SLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGA 98 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHH---hcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 455554 99998884221110 00111111124466777788888888999999998754 55678888999999999
Q ss_pred cEEEEcccC
Q psy4398 198 IAIGVHGRT 206 (306)
Q Consensus 198 d~i~v~~~~ 206 (306)
++|++-+..
T Consensus 99 ~gv~iED~~ 107 (243)
T cd00377 99 AGIHIEDQV 107 (243)
T ss_pred EEEEEecCC
Confidence 999995543
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=90.65 E-value=5.3 Score=35.54 Aligned_cols=153 Identities=10% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C--CChHHHHHHHHH
Q psy4398 117 LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F--HNEADTIALCKR 191 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g--~~~~~~~~~a~~ 191 (306)
.+.++.+.+ |++.|.+-++... ......++.......+.+.+.++..++. +..+.+-+.. . .+.+...++++.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~-G~~v~~~~~~~~~~~~~~~~l~~~~~~ 154 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASE-THSRKNLNKSREEDLENAEEAIEAAKEA-GLEVEGSLEDAFGCKTDPEYVLEVAKA 154 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeecCCCCCHHHHHHHHHH
Q ss_pred HHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEec----CCCCHHHHHHHHHhhh--------hhccccC
Q psy4398 192 LEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANG----GSKEIVDYGGVFSLNC--------AFLRNHY 258 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~G----GI~s~~~~~~~l~~~v--------~vGrall 258 (306)
+.+.|++.|.+.+. .+...+..-.+++..+++.++ +|+-..+ |.. ...+..+++.|+ .+|
T Consensus 155 ~~~~g~~~i~l~Dt--~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla-~an~laA~~aG~~~id~s~~G~G---- 227 (265)
T cd03174 155 LEEAGADEISLKDT--VGLATPEEVAELVKALREALPDVPLGLHTHNTLGLA-VANSLAALEAGADRVDGSVNGLG---- 227 (265)
T ss_pred HHHcCCCEEEechh--cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChH-HHHHHHHHHcCCCEEEecccccc----
Q ss_pred CCC-CchHHHHHHHHHhcCCC
Q psy4398 259 PVE-KLPKTILYAHCKYKRFE 278 (306)
Q Consensus 259 ~~p-~~~~~~l~~~~~~~g~~ 278 (306)
... ..+...+-.+++.+|+.
T Consensus 228 ~~~Gn~~~e~~~~~l~~~~~~ 248 (265)
T cd03174 228 ERAGNAATEDLVAALEGLGID 248 (265)
T ss_pred ccccCccHHHHHHHHHhcCCC
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=2.5 Score=38.81 Aligned_cols=84 Identities=11% Similarity=0.059 Sum_probs=54.7
Q ss_pred HHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEE
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVI 232 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvi 232 (306)
+.+.++++|+... .+|.|-++ ..+-++.+.++|+|.|.+...+. +.++++.+.+ ++.+.
T Consensus 183 i~~av~~~r~~~~~~~kIeVEv~-------tleea~~a~~agaDiImLDnmsp----------e~l~~av~~~~~~~~le 245 (290)
T PRK06559 183 VQKAIAQARAYAPFVKMVEVEVE-------SLAAAEEAAAAGADIIMLDNMSL----------EQIEQAITLIAGRSRIE 245 (290)
T ss_pred HHHHHHHHHHhCCCCCeEEEECC-------CHHHHHHHHHcCCCEEEECCCCH----------HHHHHHHHHhcCceEEE
Confidence 3456666666653 44555554 33555556679999999976532 3333333333 57899
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
++|||+ ++++.+..+.|+ ++|..-+
T Consensus 246 aSGGI~-~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 246 CSGNID-MTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred EECCCC-HHHHHHHHhcCCCEEEeCcccc
Confidence 999986 888999888876 6665444
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.55 E-value=17 Score=35.69 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
..++++..+. ++. +.|.|+||-. .++++ ++.+++.. +++++--++.... .+
T Consensus 315 ~~~~~~i~~i---~~~~~lD~vQLHG~----------------e~~~~----~~~l~~~~~~~~~iikai~v~~~-~~-- 368 (454)
T PRK09427 315 NADIEDIVDI---AKQLSLAAVQLHGD----------------EDQAY----IDALREALPKTCQIWKAISVGDT-LP-- 368 (454)
T ss_pred CCCHHHHHHH---HHHcCCCEEEeCCC----------------CCHHH----HHHHHhhcCCCCeEEEEeecCch-hh--
Confidence 4455555543 443 7899999832 23444 34444433 2455544553211 11
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p 261 (306)
..+..++|++.+... .++...+.+|..+... .+.|++..||++ +++..+++.. ++-+.+++=..|
T Consensus 369 ----~~~~~~~d~~LlDs~--~GGtG~~~DW~~l~~~---~~~p~iLAGGL~-peNV~~ai~~~P~gVDVsSGVE~~p 436 (454)
T PRK09427 369 ----ARDLQHVDRYLLDNG--QGGTGQTFDWSLLPGQ---SLDNVLLAGGLN-PDNCQQAAQLGCAGLDFNSGVESAP 436 (454)
T ss_pred ----hhhhcCCCEEEEcCC--CCCCCCccChHHhhhc---ccCCEEEECCCC-HHHHHHHHhcCCCEEEeCCcccCCC
Confidence 112346899988752 2222224578766532 267999999987 6777666542 555555544334
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=90.50 E-value=3.7 Score=40.97 Aligned_cols=176 Identities=12% Similarity=0.144 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc-EEEEeccCCChHHHHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP-VSCKIRVFHNEADTIAL 188 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir~g~~~~~~~~~ 188 (306)
.+++...+.++.+.+ |+|.|.|- |-.|. -.|..+.++++.+++.++.+ |.+=+- .|..-...-
T Consensus 151 ~~~~~l~~~~~~a~~aGad~i~i~----------DTvG~---~~P~~v~~li~~l~~~~~~~~i~vH~H--ND~GlAvAN 215 (526)
T TIGR00977 151 ANPEYALATLATAQQAGADWLVLC----------DTNGG---TLPHEISEITTKVKRSLKQPQLGIHAH--NDSGTAVAN 215 (526)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEe----------cCCCC---cCHHHHHHHHHHHHHhCCCCEEEEEEC--CCCChHHHH
Confidence 467777777777654 88887662 33443 36889999999998887643 555555 333334444
Q ss_pred HHHHHHcCCcEEEEc--ccC-C---------------CCCCC--CCCcHHHHHHHHh----hC------CCcEEEecCCC
Q psy4398 189 CKRLEACGIIAIGVH--GRT-K---------------AERPR--HRNRIEMIRTLTQ----HL------KIPVIANGGSK 238 (306)
Q Consensus 189 a~~l~~~G~d~i~v~--~~~-~---------------~~~~~--~p~~~~~v~~i~~----~~------~ipvia~GGI~ 238 (306)
+-.+.++||+.|..+ |.- + ...+. ...+++.+..+.+ .+ +.|+++.. ++
T Consensus 216 slaAv~AGA~~Vd~TinGiGERaGNa~Le~v~~~L~~~~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~-aF 294 (526)
T TIGR00977 216 SLLAVEAGATMVQGTINGYGERCGNANLCSLIPNLQLKLGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRS-AF 294 (526)
T ss_pred HHHHHHhCCCEEEEecccccCccCCCcHHHHHHHHHhhcCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcc-ee
Confidence 445567999999864 210 0 01111 1245555444443 22 24443321 11
Q ss_pred CH---HHHHHHHHhh-----h---hhccc--cCCCCCchHHHHHHHHHhcCCCCCcceehhhccceeeEEEE--cCcccc
Q psy4398 239 EI---VDYGGVFSLN-----C---AFLRN--HYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTV--NGKQYT 303 (306)
Q Consensus 239 s~---~~~~~~l~~~-----v---~vGra--ll~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 303 (306)
+- -+...+++.- + .+|+. +.-+..-.+..+..+|++.||+++.. ..++++.++..-++ +|++++
T Consensus 295 ~h~sGiH~dgi~k~~~~Ye~~~Pe~vG~~~~i~lg~~SG~~~v~~~l~~~g~~l~~~-~~~~~~~~~~vk~~~~~g~~~~ 373 (526)
T TIGR00977 295 AHKGGVHVSAVQRNPFTYEHIAPELVGNERRIVVSELAGLSNVLSKAKEFGIEIDRQ-SPACRTILAKIKELEQQGYHFE 373 (526)
T ss_pred eeeccccHHHHhCCccccccCCHHHcCCccEEEEecccCHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHHHHHHCCcEEe
Confidence 11 1122223220 0 44543 12123333448899999999998764 34455555555543 566665
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=90.48 E-value=1.7 Score=38.32 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCCCCceEEEecC--------CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 98 PREKNKIILQIGT--------ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 98 ~~~~~p~ivql~g--------~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
++.+.|+++...- .+.+...++++.+.+ |+|.|-++.. .+.+. ++.+.+.+
T Consensus 119 ~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~----------------~~~~~----~~~i~~~~ 178 (235)
T cd00958 119 HKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT----------------GDAES----FKEVVEGC 178 (235)
T ss_pred HHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC----------------CCHHH----HHHHHhcC
Confidence 3456777777643 245666776666654 9999888511 13344 44445556
Q ss_pred cccEEEEeccCC---ChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 169 SIPVSCKIRVFH---NEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 169 ~~pv~vKir~g~---~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
.+|+ .+..|+ +.++..+.++.+.++|++++.+.
T Consensus 179 ~~pv--v~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 179 PVPV--VIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred CCCE--EEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 6775 444443 56678888999999999999764
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >KOG4013|consensus | Back alignment and domain information |
|---|
Probab=90.48 E-value=1.7 Score=37.24 Aligned_cols=115 Identities=18% Similarity=0.251 Sum_probs=67.2
Q ss_pred HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--CC---ChHH---HHH
Q psy4398 117 LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--FH---NEAD---TIA 187 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g~---~~~~---~~~ 187 (306)
.+.|..+++ |+|.||| ++.= +-|+. .|. .-+++-+++...+|+.+-+|. |. +.++ ..+
T Consensus 19 ~eSA~nAe~GGAdRiEl-CSaL-------~eGGl---TPS--vG~l~~~k~~~~iP~ycMiRpR~GDFvYsd~Em~a~~~ 85 (255)
T KOG4013|consen 19 LESAENAEAGGADRIEL-CSAL-------QEGGL---TPS--VGFLSILKYKYPIPLYCMIRPRAGDFVYSDDEMAANME 85 (255)
T ss_pred HHHHHhHhhcCccHhHH-hhhh-------ccCCC---CCc--chhhhhhhcccccceEEEEecCCCCcccchHHHHHHHH
Confidence 455666776 8999999 2210 11111 111 124566677888999999986 31 2233 344
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~ 248 (306)
=.+.+.++|+|++++-+-+.++. .+.+....+-... ..||-..--+.-..|+...++
T Consensus 86 Dv~llk~~GAdGfVFGaLt~dgs----id~~~C~si~~~~rplPVTFHRAfD~~~D~k~~lE 143 (255)
T KOG4013|consen 86 DVELLKKAGADGFVFGALTSDGS----IDRTSCQSIIETARPLPVTFHRAFDVAYDWKTCLE 143 (255)
T ss_pred HHHHHHHcCCCceEEeecCCCCC----cCHHHHHHHHHhcCCCceeeeeehhhhcCHHHHHH
Confidence 55778899999999876655432 3445555555544 567766655433335544444
|
|
| >PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.38 E-value=5.8 Score=38.24 Aligned_cols=96 Identities=9% Similarity=0.009 Sum_probs=67.0
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++++..+.. |.|.|-= |+..+.. .-+.+|...+.+.+++..+.++...
T Consensus 132 ~~RPL~~tiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~--------~p~~eRv~~~~~a~~~a~~eTG~~~ 203 (407)
T PRK09549 132 HDRPLLMSIFKGVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENAL--------TPFEKRIVAGKEVLQEVYETTGHKT 203 (407)
T ss_pred CCCceEEEeecCccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCC--------cCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5678988875 6789999999887765 6776532 3433221 2344567777888888888887655
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+-++.+.+.|+.++.+.
T Consensus 204 ~y~~NiT~~~~em~~ra~~a~~~G~~~~m~~ 234 (407)
T PRK09549 204 LYAVNLTGRTFELKEKAKRAAEAGADALLFN 234 (407)
T ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCeEEEe
Confidence 4444433455778888999999999998764
|
|
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=90.37 E-value=2.6 Score=37.64 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-------CCChHHH
Q psy4398 114 ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-------FHNEADT 185 (306)
Q Consensus 114 ~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-------g~~~~~~ 185 (306)
+.+.+..+.+++ ||+.|||+-|+ +.-..+.-.++|+.+++. +.-+..-+.. ..+.+..
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGt-------------i~l~~~~r~~~I~~~~~~-Gf~v~~EvG~K~~~~~~~~~~~~~ 149 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGT-------------IDLPEEERLRLIRKAKEE-GFKVLSEVGKKDPESDFSLDPEEL 149 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SS-------------S---HHHHHHHHHHHCCT-TSEEEEEES-SSHHHHTT--CCHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCc-------------eeCCHHHHHHHHHHHHHC-CCEEeecccCCCchhcccCCHHHH
Confidence 456666677766 99999997543 222344455667766543 3333332322 1234568
Q ss_pred HHHHHHHHHcCCcEEEEcccCCC--CCC--CCCCcHHHHHHHHhhCC
Q psy4398 186 IALCKRLEACGIIAIGVHGRTKA--ERP--RHRNRIEMIRTLTQHLK 228 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~~~~--~~~--~~p~~~~~v~~i~~~~~ 228 (306)
++.++...++||+.|++-+|... +-+ .+....+.+.+|.+.++
T Consensus 150 i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~ 196 (244)
T PF02679_consen 150 IEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIERLG 196 (244)
T ss_dssp HHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-
T ss_pred HHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHHhCC
Confidence 89999999999999999888532 222 23446678888888774
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=90.36 E-value=7.5 Score=34.98 Aligned_cols=90 Identities=21% Similarity=0.183 Sum_probs=61.1
Q ss_pred CCCCceEEEec---CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc-cEE
Q psy4398 99 REKNKIILQIG---TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI-PVS 173 (306)
Q Consensus 99 ~~~~p~ivql~---g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~ 173 (306)
+.|..+.+++. ..+++.+.+.++.+.+ |+|.|-|- |-.|. -.|+.+.++++.+++.++. |+.
T Consensus 123 ~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~----------DT~G~---~~P~~v~~lv~~l~~~~~~~~l~ 189 (263)
T cd07943 123 KLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVT----------DSAGA---MLPDDVRERVRALREALDPTPVG 189 (263)
T ss_pred HCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEc----------CCCCC---cCHHHHHHHHHHHHHhCCCceEE
Confidence 45656666662 3578889999988765 99987662 45554 3699999999999998875 554
Q ss_pred EEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 174 CKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 174 vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
+=.- .+..-...-+-.+.++|++.|..+
T Consensus 190 ~H~H--n~~GlA~AN~laAi~aGa~~vd~s 217 (263)
T cd07943 190 FHGH--NNLGLAVANSLAAVEAGATRIDGS 217 (263)
T ss_pred EEec--CCcchHHHHHHHHHHhCCCEEEee
Confidence 4444 333333444444456899999865
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=2 Score=40.61 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe-c----------c
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI-R----------V 178 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-r----------~ 178 (306)
-++++..+.|+.+++ |+..|-|-.|... ....+.+.++++.+++... .+.++. + .
T Consensus 80 ls~eeI~~~a~~a~~~G~~ei~iv~G~~p------------~~~~e~y~e~ir~Ik~~~p-~i~i~a~s~~Ei~~~a~~~ 146 (353)
T PRK08444 80 MSHEEILEIVKNSVKRGIKEVHIVSAHNP------------NYGYEWYLEIFKKIKEAYP-NLHVKAMTAAEVDFLSRKF 146 (353)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCC------------CCCHHHHHHHHHHHHHHCC-CceEeeCCHHHHHHHHHHc
Confidence 477889998887765 9999999654211 1246788999999998642 255663 2 1
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCC------CC-CCCCC--CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTK------AE-RPRHR--NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~------~~-~~~~p--~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
|.. ..+.++.|.++|+|.+.-++... .. -..+. ..|..+.+.+...++++.+.+=+.-+|+.++.++
T Consensus 147 g~~---~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~ 222 (353)
T PRK08444 147 GKS---YEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRID 222 (353)
T ss_pred CCC---HHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHH
Confidence 222 45777899999999775432211 00 01111 1344444444566888765544444455544444
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=90.34 E-value=3.3 Score=38.79 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=60.7
Q ss_pred CceEEEec-------CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE
Q psy4398 102 NKIILQIG-------TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS 173 (306)
Q Consensus 102 ~p~ivql~-------g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~ 173 (306)
.++.+=+. |.++++..+.++.+++ |+|.|+++.+...........-......+....+..+.+++.+++||.
T Consensus 217 ~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi 296 (338)
T cd04733 217 FPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLM 296 (338)
T ss_pred CeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEE
Confidence 46666664 5678888888988875 999999988753221110000001111223345778888888899988
Q ss_pred EEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 174 CKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 174 vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
+-=+ . .+..+..+.+++.++|.|.+.
T Consensus 297 ~~G~--i--~t~~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 297 VTGG--F--RTRAAMEQALASGAVDGIGLA 322 (338)
T ss_pred EeCC--C--CCHHHHHHHHHcCCCCeeeeC
Confidence 7544 2 234455566666679988764
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=90.24 E-value=3.8 Score=38.23 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=66.9
Q ss_pred HHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEE-EeccC---CChHHHHHHHHHH-
Q psy4398 119 AAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC-KIRVF---HNEADTIALCKRL- 192 (306)
Q Consensus 119 aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v-Kir~g---~~~~~~~~~a~~l- 192 (306)
.|+.++ .|+|.|-+-=+ ..+ ..-||-..+.-..+.....+++|+.....|+.| -+..+ .+.++.++-|.++
T Consensus 47 sA~i~d~aGvD~ILVGDS--lgm-v~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~ 123 (332)
T PLN02424 47 SAVHVDSAGIDVCLVGDS--AAM-VVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRML 123 (332)
T ss_pred HHHHHHHcCCCEEEECCc--HHH-HhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 345555 49999876211 100 112333333345677777888888888888887 66654 3567787778777
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
.+.|+++|.+-+.. ....+.++.+. ..+|||++
T Consensus 124 ~eaGa~aVKlEGg~-------~~~~~~I~~l~-~~GIPV~g 156 (332)
T PLN02424 124 KEGGMDAVKLEGGS-------PSRVTAAKAIV-EAGIAVMG 156 (332)
T ss_pred HHhCCcEEEECCCc-------HHHHHHHHHHH-HcCCCEEE
Confidence 67999999997652 11335666666 44899993
|
|
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=3.2 Score=37.96 Aligned_cols=84 Identities=7% Similarity=0.041 Sum_probs=54.8
Q ss_pred HHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEE
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVI 232 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvi 232 (306)
+.+.++++|+... .++.|-+. + .+-+..+.++|+|.|.+...+. +.+++..+.. +.|+-
T Consensus 180 i~~ai~~~r~~~~~~~kIeVEv~---t----leea~ea~~~gaDiI~LDn~s~----------e~l~~av~~~~~~~~le 242 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVEVD---T----LDQLEEALELGVDAVLLDNMTP----------DTLREAVAIVAGRAITE 242 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeC---C----HHHHHHHHHcCCCEEEeCCCCH----------HHHHHHHHHhCCCceEE
Confidence 3566677776653 45666665 3 3344445579999999876532 3444444433 57899
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
++|||+ +++++++.+.|+ .+|..-+
T Consensus 243 aSGGI~-~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 243 ASGRIT-PETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred EECCCC-HHHHHHHHhcCCCEEEeChhhc
Confidence 999986 888888888776 5655433
|
|
| >TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III | Back alignment and domain information |
|---|
Probab=90.20 E-value=7 Score=37.75 Aligned_cols=96 Identities=6% Similarity=-0.012 Sum_probs=66.9
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.++|++..+. |.+++++++.+..+.. |.|.|-= |+..|. | .-+.+|...+.+.+++..+.++...
T Consensus 142 ~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~-------~-~p~~eRv~~~~~a~~~a~~eTG~~~ 213 (412)
T TIGR03326 142 KDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQP-------F-NRFEERVEKLYKVRDKVEAETGERK 213 (412)
T ss_pred CCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCC-------C-ccHHHHHHHHHHHHHHHHHHhCCcc
Confidence 5679988875 6789999999887766 7787633 333222 1 2345667777788888877787654
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+-++.+.+.|+.++.+.
T Consensus 214 ~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~ 244 (412)
T TIGR03326 214 EYLANITAPVREMERRAELVADLGGQYVMVD 244 (412)
T ss_pred eEEEEecCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3333322557889999999999999998764
|
Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis. |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=3.4 Score=40.48 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred EecCCCH---HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh---cccccEEEEeccC
Q psy4398 107 QIGTADP---ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS---NLSIPVSCKIRVF 179 (306)
Q Consensus 107 ql~g~~~---~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~---~~~~pv~vKir~g 179 (306)
++.|... +-.....+.+.+ |.|.+-+ ...+++.+.+...++.+++ .+...+..-.+.-
T Consensus 95 n~vgy~~ypddvv~~fv~~a~~~Gidi~Ri---------------fd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~ 159 (468)
T PRK12581 95 NLLGYRHYADDIVDKFISLSAQNGIDVFRI---------------FDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPV 159 (468)
T ss_pred cccCccCCcchHHHHHHHHHHHCCCCEEEE---------------cccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCc
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcE
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPV 231 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipv 231 (306)
-+.+-..++++.+++.|+|.|.+-+. .+...+....++++.+++..++||
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkDt--aG~l~P~~v~~Lv~alk~~~~~pi 209 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKDM--AGILTPKAAKELVSGIKAMTNLPL 209 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECCC--CCCcCHHHHHHHHHHHHhccCCeE
|
|
| >TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Back alignment and domain information |
|---|
Probab=90.08 E-value=5.7 Score=38.26 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=66.4
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEE--EccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAID--INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~ve--ln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.++|++..+. |.+++++++.+..+.. |.|.|- =|+..|.. .-+.+|.+.+.+.+++..+.++...
T Consensus 137 ~~RPL~~tiiKp~~Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~--------~p~~~Rv~~~~~a~~~a~~eTG~~~ 208 (407)
T TIGR03332 137 HERPLLMSIFKGMIGRDLGYLKEQLRQQALGGVDLVKDDEILFETGL--------APFEKRITEGKEVLQEVYEQTGHKT 208 (407)
T ss_pred CCCceeEeEeCCccCCCHHHHHHHHHHHhccCcccccCCCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHCCcc
Confidence 5678888875 5678888887776665 666652 24443321 2345677788888888888887665
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+..+..+=++.+.+.|+.++.+.
T Consensus 209 ~y~~NiT~~~~em~~ra~~a~~~G~~~~mv~ 239 (407)
T TIGR03332 209 LYAVNLTGRTFDLKDKAKRAAELGADVLLFN 239 (407)
T ss_pred eEeecCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 5444443455678999999999999998864
|
Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691). |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.07 E-value=4.6 Score=36.85 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=56.2
Q ss_pred HHHHHhc-CCCEEEEc-------cCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-ChHHHHHHH
Q psy4398 119 AAKKVEH-DVAAIDIN-------MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-NEADTIALC 189 (306)
Q Consensus 119 aa~~~~~-g~d~veln-------~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-~~~~~~~~a 189 (306)
.|++++. ||+++=+. +|.|.. +. -..+.+.+.++++.+.+++||+|-+-.|+ +.....+.+
T Consensus 30 sA~la~~aGF~al~~sg~~vA~slG~pD~--------~~--~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV 99 (289)
T COG2513 30 SALLAERAGFKALYLSGAGVAASLGLPDL--------GI--TTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTV 99 (289)
T ss_pred HHHHHHHcCCeEEEeccHHHHHhcCCCcc--------cc--ccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHH
Confidence 3455654 99998884 222221 11 12566778888888899999999998865 355688899
Q ss_pred HHHHHcCCcEEEEccc
Q psy4398 190 KRLEACGIIAIGVHGR 205 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~ 205 (306)
+.++++|+.++++-+-
T Consensus 100 ~~~~~aG~agi~iEDq 115 (289)
T COG2513 100 RELEQAGAAGIHIEDQ 115 (289)
T ss_pred HHHHHcCcceeeeeec
Confidence 9999999999998653
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.05 E-value=3.8 Score=39.39 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
+..+.++.|.++|+|.|.+..... . +....+.++++++.+ +++| ..|+|.|.++++++++.|+
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~g---~-~~~~~~~v~~ik~~~p~~~v-i~g~V~T~e~a~~l~~aGa 216 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAHG---H-STRIIELVKKIKTKYPNLDL-IAGNIVTKEAALDLISVGA 216 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCC---C-ChhHHHHHHHHHhhCCCCcE-EEEecCCHHHHHHHHHcCC
Confidence 477888999999999999865431 1 122457899999988 5664 4688899999999999865
|
|
| >cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III | Back alignment and domain information |
|---|
Probab=90.04 E-value=5.7 Score=38.35 Aligned_cols=96 Identities=7% Similarity=-0.004 Sum_probs=67.5
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= |+..+. | .-+.+|...+.+.+++..+.++...
T Consensus 129 ~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~-------~-~p~~~Rv~~~~~a~~~a~~eTG~~~ 200 (412)
T cd08213 129 KDRPLLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQP-------F-NRFEERAKESLKARDKAEAETGERK 200 (412)
T ss_pred CCCCeEEeecCcccCCCHHHHHHHHHHHHhcCCcccccCccCCCCC-------C-CCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5689998875 6789999999887765 6776522 333222 1 2344677778888888888887664
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+-++.+.+.|++++.+.
T Consensus 201 ~y~~NiT~~~~em~~ra~~a~e~G~~~~mv~ 231 (412)
T cd08213 201 AYLANITAPVREMERRAELVADLGGKYVMID 231 (412)
T ss_pred eEEEEecCCHHHHHHHHHHHHHhCCCeEEee
Confidence 4443332457889999999999999998764
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.01 E-value=2.9 Score=40.87 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcE
Q psy4398 154 PDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPV 231 (306)
Q Consensus 154 ~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipv 231 (306)
++.+.++++..++ ++.-..|-+. + .+-++.+.++|++.|-|..|.....- .++....++...+ ++.+
T Consensus 145 ~~~l~~l~~~a~~-lGl~~lvEvh---~----~~El~~al~~~a~iiGiNnRdL~t~~---vd~~~~~~l~~~ip~~~~~ 213 (454)
T PRK09427 145 DEQYRQLAAVAHS-LNMGVLTEVS---N----EEELERAIALGAKVIGINNRNLRDLS---IDLNRTRELAPLIPADVIV 213 (454)
T ss_pred HHHHHHHHHHHHH-cCCcEEEEEC---C----HHHHHHHHhCCCCEEEEeCCCCccce---ECHHHHHHHHhhCCCCcEE
Confidence 3456666666543 5777777777 2 23334456689999888888754332 3566777777777 6788
Q ss_pred EEecCCCCHHHHHHHHHh--hhhhccccCCCCCc
Q psy4398 232 IANGGSKEIVDYGGVFSL--NCAFLRNHYPVEKL 263 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~--~v~vGrall~~p~~ 263 (306)
|+-+||.+++|+..+... ++-+|++++..|..
T Consensus 214 vseSGI~t~~d~~~~~~~~davLiG~~lm~~~d~ 247 (454)
T PRK09427 214 ISESGIYTHAQVRELSPFANGFLIGSSLMAEDDL 247 (454)
T ss_pred EEeCCCCCHHHHHHHHhcCCEEEECHHHcCCCCH
Confidence 999999999999886542 45999999987643
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=89.96 E-value=2.9 Score=38.19 Aligned_cols=92 Identities=10% Similarity=-0.016 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHh-hCCCcEEE
Q psy4398 156 IACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQ-HLKIPVIA 233 (306)
Q Consensus 156 ~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~-~~~ipvia 233 (306)
.+.+.++.+|+.. ..++.|-+. ..+-++.+.++|+|.|.++..+.+ .-.+.++.+++ .-++.+.+
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~-------tleea~ea~~~GaDiI~lDn~~~e------~l~~~v~~l~~~~~~~~lea 240 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEAD-------TIEQALTVLQASPDILQLDKFTPQ------QLHHLHERLKFFDHIPTLAA 240 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC-------CHHHHHHHHHcCcCEEEECCCCHH------HHHHHHHHHhccCCCEEEEE
Confidence 4567778887754 355666665 345555566899999999854321 11233344432 22678999
Q ss_pred ecCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 234 NGGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
+|||+ ++++.+..+.++ .+|..-++.|
T Consensus 241 sGGI~-~~ni~~ya~~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 241 AGGIN-PENIADYIEAGIDLFITSAPYYAAP 270 (277)
T ss_pred ECCCC-HHHHHHHHhcCCCEEEeCcceecCc
Confidence 99986 888988888876 5554433455
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain | Back alignment and domain information |
|---|
Probab=89.87 E-value=4.3 Score=37.40 Aligned_cols=99 Identities=15% Similarity=0.249 Sum_probs=60.1
Q ss_pred cCCCCCCceEEEecCC----------CHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 96 TCPREKNKIILQIGTA----------DPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 96 ~~~~~~~p~ivql~g~----------~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
.+++.+..++++++|. +.+.|+++...+ .. |+|+|+|.+-.|... +. ...+...+.++.
T Consensus 62 ~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~---d~------~~~~~~~~al~~ 132 (294)
T cd06543 62 ALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALT---DT------AAIDRRAQALAL 132 (294)
T ss_pred HHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccc---cc------hhHHHHHHHHHH
Confidence 4455678999999873 356677666644 44 999999976654411 10 012445566677
Q ss_pred HHhcc-cccEEEEeccCCC--hHHHHHHHHHHHHcCC--cEEEEc
Q psy4398 164 LISNL-SIPVSCKIRVFHN--EADTIALCKRLEACGI--IAIGVH 203 (306)
Q Consensus 164 v~~~~-~~pv~vKir~g~~--~~~~~~~a~~l~~~G~--d~i~v~ 203 (306)
++++. +..|++-+...+. ..+..++.+.+.+.|+ |.|.+-
T Consensus 133 Lq~~~p~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~Gv~~d~VNiM 177 (294)
T cd06543 133 LQKEYPDLKISFTLPVLPTGLTPDGLNVLEAAAANGVDLDTVNIM 177 (294)
T ss_pred HHHHCCCcEEEEecCCCCCCCChhHHHHHHHHHHcCCCcceeeee
Confidence 76654 3345555443221 1245678888889996 566653
|
Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=4 Score=37.58 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=55.9
Q ss_pred HHHHHhc-CCCEEEEccC-CC-ccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-ChHHHHHHHHHHHH
Q psy4398 119 AAKKVEH-DVAAIDINMG-CP-KQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-NEADTIALCKRLEA 194 (306)
Q Consensus 119 aa~~~~~-g~d~veln~g-cP-~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-~~~~~~~~a~~l~~ 194 (306)
.|+.++. ||++|=+.-. +- ...-..|. + .-..+.+.+.++.+.+.+++||++-+-.|. +.....+.++.+++
T Consensus 29 SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~--g--~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~ 104 (292)
T PRK11320 29 HALLAERAGFKAIYLSGGGVAAASLGLPDL--G--ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIK 104 (292)
T ss_pred HHHHHHHcCCCEEEeCHHHHHhHhcCCCCC--C--CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHH
Confidence 3455554 9999877421 10 00000111 1 123456677778888888999999998864 67778899999999
Q ss_pred cCCcEEEEccc
Q psy4398 195 CGIIAIGVHGR 205 (306)
Q Consensus 195 ~G~d~i~v~~~ 205 (306)
+|+.+|+|-+.
T Consensus 105 aGaagi~IEDq 115 (292)
T PRK11320 105 AGAAAVHIEDQ 115 (292)
T ss_pred cCCeEEEEecC
Confidence 99999999653
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=3.6 Score=39.31 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 214 RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 214 p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
..+|+.++.|++..+.|||. .||.|.++++.+++.|+
T Consensus 231 ~ltW~di~~lr~~~~~pviv-KgV~s~~dA~~a~~~Gv 267 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVI-KGILDPEDARDAVRFGA 267 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEE-EecCCHHHHHHHHhCCC
Confidence 45788999999999999875 66899999999999876
|
|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=89.85 E-value=1.9 Score=38.81 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.++++..+.|+.. ++|+|.|+|+..+..+. .+.. .-....+.+..+++.+++.++.|+++-..
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~--~~~i--~~~~E~~rl~~~v~~~~~~~~~plsiDT~ 83 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPG--ADRV--SPEEELNRVVPVIKALRDQPDVPISVDTY 83 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCC--CCCC--CHHHHHHHHHHHHHHHHhcCCCeEEEeCC
Confidence 4567776666644 56999999975443321 1111 11223346788888888877888887654
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.76 E-value=7.1 Score=33.47 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=70.3
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-ccc--EEEEeccCC
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIP--VSCKIRVFH 180 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~p--v~vKir~g~ 180 (306)
+++-|-..++++..+.++.+..|.+.||+.... ....-.++++.+++.. +.. +..|+-
T Consensus 2 l~~alD~~~~~~a~~~~~~l~~~v~~iev~~~l----------------~~~~g~~~i~~l~~~~~~~~i~~d~k~~--- 62 (206)
T TIGR03128 2 LQLALDLLDIEEALELAEKVADYVDIIEIGTPL----------------IKNEGIEAVKEMKEAFPDRKVLADLKTM--- 62 (206)
T ss_pred eEEEecCCCHHHHHHHHHHcccCeeEEEeCCHH----------------HHHhCHHHHHHHHHHCCCCEEEEEEeec---
Confidence 455566778888888888885589999993111 1122245666666553 333 344444
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCc-HHHHHHHHhhCCCcEEEe-cCCCC-HHHHHHHHHhhh
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNR-IEMIRTLTQHLKIPVIAN-GGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~-~~~v~~i~~~~~ipvia~-GGI~s-~~~~~~~l~~~v 251 (306)
+... ..++.+.++|+|+|++|.-.. +.. .+.+..+++ .+++++.. =+..+ .++++.+.+.++
T Consensus 63 d~~~--~~~~~~~~~Gad~i~vh~~~~------~~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~ 127 (206)
T TIGR03128 63 DAGE--YEAEQAFAAGADIVTVLGVAD------DATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGA 127 (206)
T ss_pred cchH--HHHHHHHHcCCCEEEEeccCC------HHHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCC
Confidence 2221 246788899999999997531 112 244455554 57887754 23333 466666665444
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.73 E-value=2.5 Score=38.94 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----h--
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----N-- 250 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~-- 250 (306)
.|.+...++++.+.+.|+|+|.+-|.+.+...... ...+.++.+++.+ ++|||+.-|-++.+++.+..+. |
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad 101 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGAD 101 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCC
Confidence 57788999999999999999999888765443322 2456677788887 5898887665655555444432 3
Q ss_pred -hhhccccCCCC
Q psy4398 251 -CAFLRNHYPVE 261 (306)
Q Consensus 251 -v~vGrall~~p 261 (306)
+++-...|..|
T Consensus 102 ~il~v~PyY~k~ 113 (299)
T COG0329 102 GILVVPPYYNKP 113 (299)
T ss_pred EEEEeCCCCcCC
Confidence 25555555544
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=4.6 Score=40.88 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+++.+.+.++.+.+ |+|.|-|- |-.|. -.|..+.++++++++.+++||.+=.- .+..-...-.
T Consensus 151 ~t~e~~~~~ak~l~~~Gad~I~Ik----------DtaG~---l~P~~v~~lv~alk~~~~ipi~~H~H--nt~Gla~an~ 215 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCDSIAIK----------DMAGL---LTPTVTVELYAGLKQATGLPVHLHSH--STSGLASICH 215 (596)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC----------CcccC---CCHHHHHHHHHHHHhhcCCEEEEEeC--CCCCcHHHHH
Confidence 578999999998765 99988772 44443 37999999999999988877666555 3322233333
Q ss_pred HHHHHcCCcEEEEc
Q psy4398 190 KRLEACGIIAIGVH 203 (306)
Q Consensus 190 ~~l~~~G~d~i~v~ 203 (306)
-.+.++|||.|..+
T Consensus 216 laAieaGad~iD~a 229 (596)
T PRK14042 216 YEAVLAGCNHIDTA 229 (596)
T ss_pred HHHHHhCCCEEEec
Confidence 44467999999864
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.94 Score=44.57 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
++..+.++.|.++|+|.|.+..-. ..+ ..-.+.+++|++.+ ++|||+ |.+.|.+.++++++.|+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~---g~~-~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~ 288 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH---GHQ-VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGA 288 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC---CCc-HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCC
Confidence 356789999999999999986433 111 23568899999987 899998 77899999999999865
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III | Back alignment and domain information |
|---|
Probab=89.62 E-value=6.9 Score=37.81 Aligned_cols=96 Identities=6% Similarity=0.017 Sum_probs=67.4
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= |+..|. | .-+.+|...+.+.+++..+.++...
T Consensus 130 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGiD~IKDDE~l~~q~-------~-~p~~eRv~~~~~a~~~a~~eTG~~~ 201 (414)
T cd08206 130 YGRPLLGTIVKPKLGLSPKEYARVVYEALRGGLDFVKDDENQNSQP-------F-MRFEDRILFVAEAMDKAEAETGEAK 201 (414)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHhcCCcccccCccCCCCC-------C-CcHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5789998875 6789999999887765 7776621 333222 1 2345677778888888888887654
Q ss_pred EEEecc-CCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRV-FHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~-g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+ +.+.++..+=++.+.+.|+.++.+.
T Consensus 202 ~y~~NiT~~~~~em~~ra~~~~~~G~~~~mv~ 233 (414)
T cd08206 202 GHYLNITADTPEEMIKRAEFAKELGSVIVMVD 233 (414)
T ss_pred eEEeccCCCcHHHHHHHHHHHHHhCCcEEEEe
Confidence 444433 2337889999999999999998864
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues. |
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.55 E-value=4 Score=35.58 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=58.6
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
+.|+|.+-+=+.-+++.. -.++.+.++++++.. + ..|-|-.. ++..++.+.+++.+.|.|.+|
T Consensus 20 ~~gad~iG~If~~~SpR~----------Vs~~~a~~i~~~v~~-~-~~VgVf~n-----~~~~~i~~i~~~~~ld~VQlH 82 (208)
T COG0135 20 KAGADYIGFIFVPKSPRY----------VSPEQAREIASAVPK-V-KVVGVFVN-----ESIEEILEIAEELGLDAVQLH 82 (208)
T ss_pred HcCCCEEEEEEcCCCCCc----------CCHHHHHHHHHhCCC-C-CEEEEECC-----CCHHHHHHHHHhcCCCEEEEC
Confidence 458999888544333311 246777777777654 1 23444444 335567778888999999999
Q ss_pred ccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC
Q psy4398 204 GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK 238 (306)
Q Consensus 204 ~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~ 238 (306)
+- .+.++++++++..++|||=+=.+.
T Consensus 83 G~---------e~~~~~~~l~~~~~~~v~kai~v~ 108 (208)
T COG0135 83 GD---------EDPEYIDQLKEELGVPVIKAISVS 108 (208)
T ss_pred CC---------CCHHHHHHHHhhcCCceEEEEEeC
Confidence 74 356889999988777766554444
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=89.51 E-value=5.7 Score=36.59 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=54.5
Q ss_pred HHHHHhc-CCCEEEEccCCCcccc--ccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-ChHHHHHHHHHHHH
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFS--LTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-NEADTIALCKRLEA 194 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~--~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-~~~~~~~~a~~l~~ 194 (306)
.|+.++. ||+++-+.-++-.... ..| ++ + -..+...+.++.+...+++||++-+-.|. +..+..+.++.+++
T Consensus 28 SArl~e~aGf~ai~~sg~~~~as~lG~pD--~g-~-l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~ 103 (294)
T TIGR02319 28 SAKVIQQAGFPAVHMTGSGTSASMLGLPD--LG-F-TSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFER 103 (294)
T ss_pred HHHHHHHcCCCEEEecHHHHHHHHcCCCC--cC-C-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHH
Confidence 4455654 9999977311100000 001 11 1 23445667778888888999999998864 44557888999999
Q ss_pred cCCcEEEEccc
Q psy4398 195 CGIIAIGVHGR 205 (306)
Q Consensus 195 ~G~d~i~v~~~ 205 (306)
+|+.+|+|-+.
T Consensus 104 aGaagi~IEDq 114 (294)
T TIGR02319 104 VGIVGYHLEDQ 114 (294)
T ss_pred cCCeEEEEECC
Confidence 99999999654
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=89.47 E-value=3.1 Score=35.50 Aligned_cols=73 Identities=25% Similarity=0.330 Sum_probs=57.1
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
|+..=+|. .+.++..++++.+.+.|++.|.++-++ +...+.++.+++..+-..|+.|.|.+.++++++++.+
T Consensus 5 ~~~~i~r~-~~~~~~~~~~~~l~~~G~~~vev~~~~-------~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~G 76 (190)
T cd00452 5 PLVAVLRG-DDAEDALALAEALIEGGIRAIEITLRT-------PGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAG 76 (190)
T ss_pred cEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC
Confidence 44444552 567889999999999999999997542 3366788999988865678899999999999998865
Q ss_pred h
Q psy4398 251 C 251 (306)
Q Consensus 251 v 251 (306)
+
T Consensus 77 a 77 (190)
T cd00452 77 A 77 (190)
T ss_pred C
Confidence 4
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >TIGR01093 aroD 3-dehydroquinate dehydratase, type I | Back alignment and domain information |
|---|
Probab=89.44 E-value=7.3 Score=34.28 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=57.1
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEEEecc----
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSCKIRV---- 178 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir~---- 178 (306)
+++.+.+.+.++....++.+..|+|.||+= -|.+.. ..+.+.+.++.+.++.. .++|+.+=+|.
T Consensus 2 i~v~~~~~~~~~~~~~~~~~~~~aD~vElR---------lD~l~~--~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eG 70 (228)
T TIGR01093 2 IFVPLTAPDLEEALATAEKICKGADIVELR---------VDLLKD--PSSNNDVDALIEQLSQLRPDKPLIFTIRTISEG 70 (228)
T ss_pred EEEEccCCCHHHHHHHHHHhccCCCEEEEE---------echhcc--cCcHHHHHHHHHHHHHhcCCCcEEEEECChhhC
Confidence 677888888888777777665699999993 332211 12233444555555432 36898888886
Q ss_pred C---CChHHHHHHHHHH-HHcCCcEEEEc
Q psy4398 179 F---HNEADTIALCKRL-EACGIIAIGVH 203 (306)
Q Consensus 179 g---~~~~~~~~~a~~l-~~~G~d~i~v~ 203 (306)
| .+.++..++.+.+ ...++|+|.+.
T Consensus 71 G~~~~~~~~~~~ll~~~~~~~~~d~vDiE 99 (228)
T TIGR01093 71 GKFPGNEEEYLEELKRAADSPGPDFVDIE 99 (228)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 2 1334455666665 66789999985
|
Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088. |
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=89.40 E-value=9.3 Score=35.95 Aligned_cols=110 Identities=16% Similarity=0.264 Sum_probs=68.2
Q ss_pred CCCceEEEecCCC-HHH----HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEE
Q psy4398 100 EKNKIILQIGTAD-PER----ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC 174 (306)
Q Consensus 100 ~~~p~ivql~g~~-~~~----~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v 174 (306)
.+.|+.+|=..++ ..+ ..+..+..++|+|-|-+- +|. ....+-++.+++.+.+|+..
T Consensus 24 g~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRva--v~~----------------~~~a~al~~I~~~~~iPlvA 85 (360)
T PRK00366 24 GDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVA--VPD----------------MEAAAALPEIKKQLPVPLVA 85 (360)
T ss_pred CCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEc--cCC----------------HHHHHhHHHHHHcCCCCEEE
Confidence 4679999965543 222 333333444699998873 333 22355677888888999999
Q ss_pred EeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCc--EEEecC
Q psy4398 175 KIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIP--VIANGG 236 (306)
Q Consensus 175 Kir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ip--via~GG 236 (306)
-+- .+ ..+|-...++|+|.|-+.+...... ...+..+-+.++..++| |=.|.|
T Consensus 86 DIH--Fd----~~lAl~a~~~G~~~iRINPGNig~~---~~~v~~vv~~ak~~~ipIRIGvN~G 140 (360)
T PRK00366 86 DIH--FD----YRLALAAAEAGADALRINPGNIGKR---DERVREVVEAAKDYGIPIRIGVNAG 140 (360)
T ss_pred ecC--CC----HHHHHHHHHhCCCEEEECCCCCCch---HHHHHHHHHHHHHCCCCEEEecCCc
Confidence 988 44 4666677889999998875543110 12344444445555666 444555
|
|
| >PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.8 Score=38.02 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=59.9
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
++++-|--.+.+++.+.++.+....+.|++++..= ..|| .+.+.++++.+++.- .|+++-+..+.-.
T Consensus 2 ~L~vALD~~~~~~a~~i~~~~~~~v~~iKvG~~l~------~~~G------~~~l~~~i~~l~~~~-~~I~~D~K~~Dig 68 (226)
T PF00215_consen 2 KLQVALDPTDLEEALRIADELGDYVDIIKVGTPLF------LAYG------LEALPEIIEELKERG-KPIFLDLKLGDIG 68 (226)
T ss_dssp EEEEEE-SSSHHHHHHHHHHHGGGSSEEEEEHHHH------HHHC------HHHHHHHHHHHHHTT-SEEEEEEEE-SSH
T ss_pred CEEEEeCCCCHHHHHHHHHHhcCcceEEEEChHHH------hcCC------hhhHHHHHHHHHHhc-CCEeeeeeecccc
Confidence 34555556677788888887777899999975421 1133 237788999998774 5655444433434
Q ss_pred HHHHHHHH---HHHHcCCcEEEEccc
Q psy4398 183 ADTIALCK---RLEACGIIAIGVHGR 205 (306)
Q Consensus 183 ~~~~~~a~---~l~~~G~d~i~v~~~ 205 (306)
......++ .+.+.|+|.+++|+.
T Consensus 69 ~t~~~~~~~~~~~~~~gaD~vTv~~~ 94 (226)
T PF00215_consen 69 NTVARYAEAGFAAFELGADAVTVHPF 94 (226)
T ss_dssp HHHHHHHHSCHHHHTTTESEEEEEGT
T ss_pred hHHHHHHHHhhhhhcCCCcEEEEecc
Confidence 45566666 678999999999974
|
In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A .... |
| >KOG4175|consensus | Back alignment and domain information |
|---|
Probab=89.30 E-value=8.8 Score=33.27 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=34.8
Q ss_pred HHHHHHHhhC-CCcEEEecCCCCHHHHHHHHH--hhhhhccccC
Q psy4398 218 EMIRTLTQHL-KIPVIANGGSKEIVDYGGVFS--LNCAFLRNHY 258 (306)
Q Consensus 218 ~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~--~~v~vGrall 258 (306)
+++.++++.+ +.|+-..=||.+.|+...+-+ .|+.+|+.+.
T Consensus 196 ~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsvaDGVvvGSkiv 239 (268)
T KOG4175|consen 196 SLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSVADGVVVGSKIV 239 (268)
T ss_pred HHHHHHHHhcCCCceeEeeccCCHHHHHhhhhhccceEecHHHH
Confidence 5778999999 899988889999999998875 4889998864
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.42 Score=40.47 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.|......-.+.+++...|++-+-+. .....++++++.+++||||.|=|.+.+++++++++|+
T Consensus 101 iDS~al~~~~~~i~~~~PD~vEilPg---------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa 163 (175)
T PF04309_consen 101 IDSSALETGIKQIEQSKPDAVEILPG---------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGA 163 (175)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEESC---------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTC
T ss_pred ecHHHHHHHHHHHhhcCCCEEEEchH---------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCC
Confidence 34455666778888899999988532 2336778888889999999999999999999999876
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.26 E-value=7 Score=39.79 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=47.1
Q ss_pred HHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC------------Ch
Q psy4398 116 ALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH------------NE 182 (306)
Q Consensus 116 ~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~------------~~ 182 (306)
+.+++..+. .++++|-+||+. .|+.+.++++.+...++.|+.|+-..|. +.
T Consensus 186 ~~~~~~~~~~~~~~avGiNC~~----------------~p~~~~~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~~~~~p 249 (612)
T PRK08645 186 LEEALKELVAAGADVVGLNCGL----------------GPYHMLEALERIPIPENAPLSAYPNAGLPEYVDGRYVYSANP 249 (612)
T ss_pred HHHHHHHHHhCCCCEEEecCCC----------------CHHHHHHHHHHHHhccCceEEEEECCCCCCCCCCccccCCCH
Confidence 555555554 379999999875 1344555666666556778888766532 23
Q ss_pred HHHHHHHHHHHHcCCcEEE
Q psy4398 183 ADTIALCKRLEACGIIAIG 201 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~ 201 (306)
+...+.++.+.+.|+..|-
T Consensus 250 ~~~~~~~~~~~~~Ga~iiG 268 (612)
T PRK08645 250 EYFAEYALEFVEQGVRLIG 268 (612)
T ss_pred HHHHHHHHHHHHhCCCEEe
Confidence 4567778888888988885
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.22 E-value=4 Score=38.27 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=47.0
Q ss_pred CCcEEEEcccCCCCCCCCCCcHHHHHHHHh-----hC---CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 196 GIIAIGVHGRTKAERPRHRNRIEMIRTLTQ-----HL---KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 196 G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~-----~~---~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
|++.|-|..|.-...- .+++...++.+ .+ ++-+|+-+||.+++|+..+.+.|+ -||.++++.|.
T Consensus 251 ga~iIGINNRdL~Tf~---vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~d 325 (338)
T PLN02460 251 GVELIGINNRSLETFE---VDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDD 325 (338)
T ss_pred CCCEEEEeCCCCCcce---ECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCC
Confidence 7777777766544322 35666677766 22 455899999999999999998754 99999998764
|
|
| >PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=89.21 E-value=7.1 Score=38.32 Aligned_cols=96 Identities=2% Similarity=-0.088 Sum_probs=66.1
Q ss_pred CCCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 99 REKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 99 ~~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
..+.|++..+. |-+++++++.+..+.. |.|.|-= |+..+. | .-+.++...+.+.+++..+.++..
T Consensus 157 v~~RPL~gtiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~-------f-~p~~~Rv~~~~~a~~~a~~eTG~~ 228 (468)
T PRK04208 157 KYGRPLLGTTPKPKLGLSAKNYGRVVYEALRGGLDFTKDDENLNSQP-------F-NRWRDRFLFVMEAIDKAEAETGER 228 (468)
T ss_pred CCCCceEEEeeccccCCCHHHHHHHHHHHHhcCCceeeCCCCCCCCC-------C-ccHHHHHHHHHHHHHHHHHhhCCc
Confidence 35778988875 6789999999887765 7777632 233221 1 234456677778888877777655
Q ss_pred EE--EEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 172 VS--CKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 172 v~--vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
.. +-++ +.+.++..+-++.+.+.|+.++.+.
T Consensus 229 k~y~~NiT-~~~~~em~~ra~~~~e~G~~~~mv~ 261 (468)
T PRK04208 229 KGHYLNVT-APTMEEMYKRAEFAKELGSPIVMID 261 (468)
T ss_pred ceEEEecC-CCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 33 3344 2347889999999999999998864
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.21 E-value=6 Score=38.86 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~ 190 (306)
+++.+.+.++.+.+ |+|.|-|- |-.|. -.|..+.++++++++.+++||.+=.- .+..-...-+-
T Consensus 151 t~e~~~~~a~~l~~~Gad~I~i~----------Dt~G~---l~P~~v~~Lv~~lk~~~~vpI~~H~H--nt~GlA~AN~l 215 (467)
T PRK14041 151 TLEYYLEFARELVDMGVDSICIK----------DMAGL---LTPKRAYELVKALKKKFGVPVEVHSH--CTTGLASLAYL 215 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC----------CccCC---cCHHHHHHHHHHHHHhcCCceEEEec--CCCCcHHHHHH
Confidence 56888898887765 99987772 44443 37999999999999998877665554 23222333333
Q ss_pred HHHHcCCcEEEEc
Q psy4398 191 RLEACGIIAIGVH 203 (306)
Q Consensus 191 ~l~~~G~d~i~v~ 203 (306)
++.++|||.|..+
T Consensus 216 aAieaGad~vD~s 228 (467)
T PRK14041 216 AAVEAGADMFDTA 228 (467)
T ss_pred HHHHhCCCEEEee
Confidence 4457999999864
|
|
| >CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit | Back alignment and domain information |
|---|
Probab=89.10 E-value=7.5 Score=38.23 Aligned_cols=96 Identities=3% Similarity=-0.158 Sum_probs=67.5
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= |+..+.- .-+.+|.+.+.+.+++..+.++...
T Consensus 165 ~~RPLigtiiKP~~GLsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~--------~p~~eRv~~~~~a~~~a~~eTG~~~ 236 (475)
T CHL00040 165 YGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPF--------MRWRDRFLFCAEAIYKAQAETGEIK 236 (475)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHcCCCcccccCccCCCCCC--------CCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 5678998875 6789999998886665 6776532 3332221 2345667777888888888887655
Q ss_pred EEEeccC-CChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVF-HNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g-~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-+.+. .+.++..+=++.+.+.|+.++.+.
T Consensus 237 ~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~ 268 (475)
T CHL00040 237 GHYLNATAGTCEEMYKRAVFARELGVPIVMHD 268 (475)
T ss_pred eeeeccCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 4444543 467889999999999999998763
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.10 E-value=6 Score=38.66 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+++.+.+.++.+.+ |+|.|-|- |-.|. -.|..+.++++++++.+++||.+=.- .+..-...-+
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~----------Dt~G~---l~P~~v~~lv~alk~~~~~pi~~H~H--nt~GlA~AN~ 215 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIK----------DMAGI---LTPYVAYELVKRIKEAVTVPLEVHTH--ATSGIAEMTY 215 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc----------CCCCC---CCHHHHHHHHHHHHHhcCCeEEEEec--CCCCcHHHHH
Confidence 356888888887764 99987772 44443 37999999999999998877666555 2222233333
Q ss_pred HHHHHcCCcEEEEc
Q psy4398 190 KRLEACGIIAIGVH 203 (306)
Q Consensus 190 ~~l~~~G~d~i~v~ 203 (306)
-++.++|||.|..+
T Consensus 216 laAieaGad~vD~s 229 (448)
T PRK12331 216 LKAIEAGADIIDTA 229 (448)
T ss_pred HHHHHcCCCEEEee
Confidence 34457999999864
|
|
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=89.01 E-value=1.4 Score=39.30 Aligned_cols=117 Identities=9% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHhc-CCCEEEEccCCCccccccCC--------------ccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCCh
Q psy4398 119 AAKKVEH-DVAAIDINMGCPKQFSLTGG--------------MGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNE 182 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gcP~~~~~~~~--------------~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~ 182 (306)
..+.+++ |+|+|-+..-.+..-..... .=..+.++.++..+....+.+.+ ..-+..-.+ +..
T Consensus 1 lI~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~st--pfd 78 (241)
T PF03102_consen 1 LIDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFST--PFD 78 (241)
T ss_dssp HHHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEE--E-S
T ss_pred CHHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEEC--CCC
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
.+.++++ ++.|++++-|.... -.++++++.+++ ++.|||.+-|..+.++.+++++
T Consensus 79 ~~s~d~l---~~~~~~~~KIaS~d-------l~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~Av~ 133 (241)
T PF03102_consen 79 EESVDFL---EELGVPAYKIASGD-------LTNLPLLEYIAK-TGKPVILSTGMSTLEEIERAVE 133 (241)
T ss_dssp HHHHHHH---HHHT-SEEEE-GGG-------TT-HHHHHHHHT-T-S-EEEE-TT--HHHHHHHHH
T ss_pred HHHHHHH---HHcCCCEEEecccc-------ccCHHHHHHHHH-hCCcEEEECCCCCHHHHHHHHH
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.93 E-value=3.7 Score=37.02 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHhc-CCCEEEEccCCCcccccc-CCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 112 DPERALEAAKKVEH-DVAAIDINMGCPKQFSLT-GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 112 ~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~-~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
+-++..++|+.++. |++.+---.--|.++.-. .++| +.-.++.+++++..+.|+...+. +..+...+
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlg-------e~gL~~l~~a~~~~Gl~vvtEvm---~~~~~e~~- 125 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLG-------EEGLKLLKRAADETGLPVVTEVM---DVRDVEAA- 125 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccC-------HHHHHHHHHHHHHcCCeeEEEec---CHHHHHHH-
Confidence 55778888888875 998887665544432211 2222 34566788888889999999988 43433333
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC-CCCHHHHHHHHHhhhhhc
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG-SKEIVDYGGVFSLNCAFL 254 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG-I~s~~~~~~~l~~~v~vG 254 (306)
.++ +|.|.|-+|.. .|+++++++-+ .+.||+.--| -.|++++-.+.++.++=|
T Consensus 126 ---~~y-~DilqvGARNM-------QNF~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI~s~G 179 (286)
T COG2876 126 ---AEY-ADILQVGARNM-------QNFALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYILSHG 179 (286)
T ss_pred ---Hhh-hhHHHhcccch-------hhhHHHHHhcc-cCCCeEEecCccccHHHHHHHHHHHHhCC
Confidence 333 66666666532 36677777664 3789988866 457888888888766444
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=88.89 E-value=6.2 Score=34.45 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=73.0
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCC--EEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVA--AIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d--~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
+.++.+|+.+.+.++..+.|+.+..++. .|+| |.++ .-.+.++.+++. ++++.+-.=
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~---------------~gl~ai~~L~~~-gi~v~~T~V- 109 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE---------------DGLKAIKKLSEE-GIKTNVTAI- 109 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH---------------hHHHHHHHHHHc-CCceeeEEe-
Confidence 3589999999999999999988765333 3333 3311 113455555444 444443332
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEE-cccCCCCCCCCCCcHHHHHHHHhhC---CCc-EEEecCCCCHHHHHHHHHhhh
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGV-HGRTKAERPRHRNRIEMIRTLTQHL---KIP-VIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v-~~~~~~~~~~~p~~~~~v~~i~~~~---~ip-via~GGI~s~~~~~~~l~~~v 251 (306)
.+ .+-+..+.++|+++|.. .+|..+... ..++.++++.+.+ +++ =|...|++++.++.++...|+
T Consensus 110 -~s----~~Qa~~Aa~AGA~yvsP~vgR~~~~g~---dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Ga 179 (211)
T cd00956 110 -FS----AAQALLAAKAGATYVSPFVGRIDDLGG---DGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGA 179 (211)
T ss_pred -cC----HHHHHHHHHcCCCEEEEecChHhhcCC---CHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCC
Confidence 22 34445556789999774 344333222 2345555555544 433 445677899999998888765
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PRK15129 L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Probab=88.89 E-value=19 Score=33.32 Aligned_cols=82 Identities=10% Similarity=0.163 Sum_probs=54.0
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccC
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVF 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g 179 (306)
.|+...+...+++++.+.++.. +.||..+-+.++ |. . -.+.++++++.++ +.+.+--..+
T Consensus 119 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~-~~---------------~--d~~~v~avr~~~~~~~l~vDaN~~ 180 (321)
T PRK15129 119 VTTAQTVVIGTPEQMANSASALWQAGAKLLKVKLD-NH---------------L--ISERMVAIRSAVPDATLIVDANES 180 (321)
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCC-Cc---------------h--HHHHHHHHHHhCCCCeEEEECCCC
Confidence 3444455556777776666654 469999999752 11 1 1356788888763 2233333336
Q ss_pred CChHHHHHHHHHHHHcCCcEEE
Q psy4398 180 HNEADTIALCKRLEACGIIAIG 201 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~ 201 (306)
|+.+++.++++.+++.++.+|-
T Consensus 181 w~~~~A~~~~~~l~~~~i~~iE 202 (321)
T PRK15129 181 WRAEGLAARCQLLADLGVAMLE 202 (321)
T ss_pred CCHHHHHHHHHHHHhcCceEEE
Confidence 8889999999999999988774
|
|
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=88.88 E-value=4.4 Score=37.50 Aligned_cols=91 Identities=9% Similarity=0.079 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcc-----cccEEEEeccCCChHHHHHHHHHHHH------cCCcEEEEccc--CCCCCCCCCCcHHHHHHH
Q psy4398 157 ACNILTTLISNL-----SIPVSCKIRVFHNEADTIALCKRLEA------CGIIAIGVHGR--TKAERPRHRNRIEMIRTL 223 (306)
Q Consensus 157 ~~eiv~~v~~~~-----~~pv~vKir~g~~~~~~~~~a~~l~~------~G~d~i~v~~~--~~~~~~~~p~~~~~v~~i 223 (306)
+.+.++++++.. ..+|.|-++ + .+-++.+.+ +|+|.|.+... ++++... +.+.+++.
T Consensus 186 i~~av~~~r~~~~~~~~~~kIeVEv~---t----leea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~---~~e~l~~a 255 (308)
T PLN02716 186 ITNAVQSADKYLEEKGLSMKIEVETR---T----LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDV---DVSMLKEA 255 (308)
T ss_pred HHHHHHHHHHhhhhcCCCeeEEEEEC---C----HHHHHHHHHhcccccCCCCEEEeCCCcccccccCC---CHHHHHHH
Confidence 346667776622 234555555 2 333333445 89999999876 3332222 33555555
Q ss_pred HhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 224 TQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 224 ~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
.+.. ..|+-++|||+ ++++.+..+.|+ ++|..-+
T Consensus 256 v~~~~~~~~lEaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 256 VELINGRFETEASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred HHhhCCCceEEEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 4444 47899999987 888888888776 5555433
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.76 E-value=2.5 Score=38.26 Aligned_cols=133 Identities=16% Similarity=0.228 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--CCChHHHHHH
Q psy4398 111 ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--FHNEADTIAL 188 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g~~~~~~~~~ 188 (306)
.+.+++..+. +.|++.|.+-++... ...+...+....+..+.+.++++..++. +..+.+-+.. +-+.+...++
T Consensus 72 ~~~~di~~a~---~~g~~~i~i~~~~S~-~~~~~~~~~~~~e~~~~~~~~i~~a~~~-G~~v~~~~eda~r~~~~~l~~~ 146 (262)
T cd07948 72 CHMDDARIAV---ETGVDGVDLVFGTSP-FLREASHGKSITEIIESAVEVIEFVKSK-GIEVRFSSEDSFRSDLVDLLRV 146 (262)
T ss_pred CCHHHHHHHH---HcCcCEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeeCCCCHHHHHHH
Confidence 3444444332 349998888665321 1122233333333345556666666554 4444444322 2456779999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhCCCcEEEecCCC---CHHHHHHHHHhhh
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHLKIPVIANGGSK---EIVDYGGVFSLNC 251 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~~ipvia~GGI~---s~~~~~~~l~~~v 251 (306)
++.+.++|++.|.+-+.... ..|. -.++++.+++.+++|+-..+-=+ ....+..+++.|+
T Consensus 147 ~~~~~~~g~~~i~l~Dt~G~---~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~ 210 (262)
T cd07948 147 YRAVDKLGVNRVGIADTVGI---ATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGA 210 (262)
T ss_pred HHHHHHcCCCEEEECCcCCC---CCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 99999999999988654321 1132 34677888888887775544211 1333444555554
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.65 E-value=16 Score=33.99 Aligned_cols=108 Identities=9% Similarity=0.086 Sum_probs=68.8
Q ss_pred ecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccCCChHHHH
Q psy4398 108 IGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVFHNEADTI 186 (306)
Q Consensus 108 l~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~~~~~~~ 186 (306)
|...++++..+.++.+ +||..+-+.+|. .+++.-.+.++++++.++ ..+.+-...+|+.+++.
T Consensus 111 l~~~~~~~~~~~a~~~-~Gf~~~KvKvG~---------------~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~ 174 (322)
T PRK05105 111 LCYGDPDELILKLADM-PGEKVAKVKVGL---------------YEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQ 174 (322)
T ss_pred eecCCHHHHHHHHHHc-CCCCEEEEEECC---------------CCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 3345677666555554 799988886542 133444566777777652 22333333368899999
Q ss_pred HHHHHHHH---cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHH
Q psy4398 187 ALCKRLEA---CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241 (306)
Q Consensus 187 ~~a~~l~~---~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~ 241 (306)
++++.+++ .++.+|- ++.. ..+..+++++.+++||.+-=.+.+.+
T Consensus 175 ~~~~~l~~~~~~~i~~iE-------qP~~---~~~~~~~l~~~~~~PIa~DEs~~~~~ 222 (322)
T PRK05105 175 QFAKYVPPDYRHRIAFLE-------EPCK---TPDDSRAFARATGIAIAWDESLREPD 222 (322)
T ss_pred HHHHHhhhhcCCCccEEE-------CCCC---CHHHHHHHHHhCCCCEEECCCCCchh
Confidence 99999998 7777764 2221 23455778888888887766666654
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.64 E-value=3.8 Score=38.27 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCC--cEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-C
Q psy4398 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI--IAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-I 229 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~--d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-i 229 (306)
+++...+.++.++ ...++|-+..+.+.+ ..+-+..+.++|+ |.|.+.... ++. ....+.+++|++.++ +
T Consensus 70 ~~e~~~~~~r~~~---~~~l~v~~~vg~~~~-~~~~~~~Lv~ag~~~d~i~iD~a~---gh~-~~~~e~I~~ir~~~p~~ 141 (326)
T PRK05458 70 DPEARIPFIKDMH---EQGLIASISVGVKDD-EYDFVDQLAAEGLTPEYITIDIAH---GHS-DSVINMIQHIKKHLPET 141 (326)
T ss_pred CHHHHHHHHHhcc---ccccEEEEEecCCHH-HHHHHHHHHhcCCCCCEEEEECCC---Cch-HHHHHHHHHHHhhCCCC
Confidence 4544444443332 334567777655544 4566677777855 999986543 111 224678999999985 5
Q ss_pred cEEEecCCCCHHHHHHHHHhhh
Q psy4398 230 PVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 230 pvia~GGI~s~~~~~~~l~~~v 251 (306)
|| ..|.|.|.+++..+.+.|+
T Consensus 142 ~v-i~g~V~t~e~a~~l~~aGa 162 (326)
T PRK05458 142 FV-IAGNVGTPEAVRELENAGA 162 (326)
T ss_pred eE-EEEecCCHHHHHHHHHcCc
Confidence 54 4566889999999999876
|
|
| >PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes | Back alignment and domain information |
|---|
Probab=88.62 E-value=1.5 Score=41.68 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred eEEEecCCCH-HHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh----------------
Q psy4398 104 IILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS---------------- 166 (306)
Q Consensus 104 ~ivql~g~~~-~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~---------------- 166 (306)
+.+++.+.+| ++|+++++.+.+..+.=-+=+|| |++.+.+.++.+..
T Consensus 73 Ialr~~S~DPae~fa~~vk~V~~a~~~PLIL~~~----------------D~evl~aale~~~~~kpLL~aAt~eNyk~m 136 (386)
T PF03599_consen 73 IALRLESGDPAEEFAKAVKKVAEAVDVPLILCGC----------------DPEVLKAALEACAGKKPLLYAATEENYKAM 136 (386)
T ss_dssp EEEE-GGGSTHHHHHHHHHHHHHC-SSEEEEESS----------------HHHHHHHHHHHTTTS--EEEEEBTTTHHHH
T ss_pred EEEEecCCChHHHHHHHHHHHHHhcCCCEEEEeC----------------CHHHHHHHHHHhCcCCcEEeEcCHHHHHHH
Q ss_pred -----cccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh-------CCCcEEEe
Q psy4398 167 -----NLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH-------LKIPVIAN 234 (306)
Q Consensus 167 -----~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~-------~~ipvia~ 234 (306)
..+.|+.++-. .+.+...++.+.+.+.|++-|++...+..-+|.-...+....+||.+ ++.|+|..
T Consensus 137 ~~lA~~y~~pl~v~sp--~Dln~lk~Ln~~l~~~Gv~dIVlDpgt~~lGyGie~t~s~~~rIRraALk~Dr~lgyPiI~~ 214 (386)
T PF03599_consen 137 AALAKEYGHPLIVSSP--IDLNLLKQLNIKLTELGVKDIVLDPGTRALGYGIEYTYSNMERIRRAALKGDRPLGYPIITF 214 (386)
T ss_dssp HHHHHHCT-EEEEE-S--SCHHHHHHHHHHHHTTT-GGEEEE---SSTTTTHHHHHHHHHHHHHHHHHT-GGG-S-BEEC
T ss_pred HHHHHHcCCeEEEEec--ccHHHHHHHHHHHHhcCcccEEecCCcccchhHHHHHHHHHHHHHHHHhccCcccCCceeec
Q ss_pred c
Q psy4398 235 G 235 (306)
Q Consensus 235 G 235 (306)
+
T Consensus 215 ~ 215 (386)
T PF03599_consen 215 P 215 (386)
T ss_dssp H
T ss_pred c
|
; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 306 | ||||
| 1vhn_A | 318 | Crystal Structure Of A Putative Flavin Oxidoreducta | 2e-11 | ||
| 3b0p_A | 350 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 2e-07 | ||
| 3b0v_C | 363 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 3e-06 |
| >pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With Flavin Length = 318 | Back alignment and structure |
|
| >pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus Length = 350 | Back alignment and structure |
|
| >pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In Complex With Trna Length = 363 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 3e-39
Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 21/210 (10%)
Query: 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVD 86
++ K+ LAPM FR LA ++GAD +SE + + +K +LL
Sbjct: 1 MSLEVKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQ----- 55
Query: 87 PLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCP-KQFSLTGG 145
P E+N + +QI ++P EAA+ + ID+N GCP ++ G
Sbjct: 56 -----------PHERN-VAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGA 103
Query: 146 MGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR 205
G ALL I+ L ++S S K R+ + + + + L G+ + +H R
Sbjct: 104 -GGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTR 162
Query: 206 TKAERPRHRNRIEMIRTLTQHLKIPVIANG 235
T + R + + L + IP +G
Sbjct: 163 TVVQSFTGRAEWKALSVLEKR--IPTFVSG 190
|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 6e-15
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 242 DYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNG 299
G+ + F R YP + PK L C+ ++ P YETVQ +++F S+VTV
Sbjct: 6 SGSGIIKMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAE 65
Query: 300 KQYTSKF 306
++Y S
Sbjct: 66 QKYQSTL 72
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Length = 350 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 5e-08
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 104 IILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILT 162
I LQ+ +DP+ EAA+ E I++N+GCP + + GG GA LL IL
Sbjct: 60 IALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILK 119
Query: 163 TLISNLSIPVSCKIRV----FHNEADTIALCKRLEACGIIAIGVHGRTKA 208
+ + +PV+ K+R+ + + G+ VH R A
Sbjct: 120 AMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHAR-SA 168
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 4e-05
Identities = 50/345 (14%), Positives = 103/345 (29%), Gaps = 113/345 (32%)
Query: 48 LLALDYGADLVYSEELVDH-----KLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKN 102
LL L + V + + + K++ T R DF+ + +
Sbjct: 247 LLVLL---N-VQNAKAWNAFNLSCKILLTTRFKQV----TDFLSAATTTHIS-------- 290
Query: 103 KIILQIGTADPERALEA-AKKVEHDVA-----AIDINMGCPKQFSLTGGMGAALLSTPD- 155
+ T P+ K ++ + N P++ S+ L+T D
Sbjct: 291 -LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIRDGLATWDN 346
Query: 156 ---IACNILTTLIS----------------NLSI-PVSCKI------RVFHN--EADTIA 187
+ C+ LTT+I LS+ P S I ++ + ++D +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 188 LCKRLEACGIIA-------IGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI--ANGGSK 238
+ +L ++ I + + + N + R++ H IP ++
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 239 EIVD-----YGG-------------VFS---LNCAFLRNHYPVEKLPKTILYAHC----- 272
+D + G +F L+ FL K+ +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-----KIRHDSTAWNASGSIL 521
Query: 273 -------KYKRFEVPKYETVQYEKLFRSLVT----VNGKQYTSKF 306
YK + YE+L +++ + SK+
Sbjct: 522 NTLQQLKFYKPYICDNDPK--YERLVNAILDFLPKIEENLICSKY 564
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-05
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 25/119 (21%)
Query: 9 LLVKIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADL-VYSEELVDHK 67
L +F LD + I + + A +NTL L Y + D+
Sbjct: 492 LFRMVF--LDF-RFLEQKIRHDSTAWNASGSILNTL----------QQLKFYKPYICDND 538
Query: 68 LVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERAL--EAAKKVE 124
K ER VN +L DF+ ++ +++ K +L+I + A+ EA K+V+
Sbjct: 539 P-KYERLVNAIL---DFLPKIEENLI-----CSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Length = 311 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-05
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 104 IILQIGTADPERALEAAKKV--EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL 161
II + ++ + K+ +V AI++N+ CP G A + P++A ++
Sbjct: 101 IIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPN----VKHGGQAFGTDPEVAAALV 156
Query: 162 TTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI-------GVHGRTKAERPRHR 214
+ +P+ K+ N D + + K +EA G + GV K +P
Sbjct: 157 KACKAVSKVPLYVKLSP--NVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILA 214
Query: 215 NR-------------IEMIRTLTQHLKIPVIANGG 236
N +++I + Q + IP+I GG
Sbjct: 215 NITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGG 249
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 306 | |||
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 100.0 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 100.0 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 100.0 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 100.0 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 100.0 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 100.0 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 100.0 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 100.0 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 100.0 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 100.0 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 100.0 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 100.0 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 100.0 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 100.0 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 100.0 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 100.0 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 100.0 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 100.0 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 100.0 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 100.0 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 100.0 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 100.0 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 100.0 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 100.0 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 100.0 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 100.0 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 100.0 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 100.0 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.98 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 99.97 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.97 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 99.97 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.96 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.89 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.88 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.86 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.85 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.84 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.84 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.81 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 99.77 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 99.77 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 99.75 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.74 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.71 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.68 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.67 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.66 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.59 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.58 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 99.58 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.54 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 99.54 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 99.49 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.46 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.46 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.44 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 99.4 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 99.39 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.31 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.3 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 99.3 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.29 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.29 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 99.28 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.28 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.26 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.2 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 99.19 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 99.14 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.14 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.12 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 99.09 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 99.09 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 99.05 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 99.05 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 99.02 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 98.97 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.95 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 98.95 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 98.92 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 98.92 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.9 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 98.89 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.89 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 98.88 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.87 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 98.86 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.85 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 98.85 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.82 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 98.82 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 98.8 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 98.79 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 98.77 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 98.77 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 98.77 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 98.75 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 98.75 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 98.73 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 98.72 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 98.71 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 98.7 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 98.69 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 98.69 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 98.69 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 98.67 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.67 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 98.66 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.66 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 98.66 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 98.65 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 98.63 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 98.62 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 98.6 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.6 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 98.6 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 98.59 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 98.56 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 98.56 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 98.55 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.52 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 98.51 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 98.51 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 98.51 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 98.49 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 98.49 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.49 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.47 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.47 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 98.46 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 98.46 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.43 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.42 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 98.42 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.4 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 98.4 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.38 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 98.38 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 98.37 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.35 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.35 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 98.34 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 98.34 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 98.33 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 98.32 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 98.31 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 98.31 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 98.3 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.3 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 98.29 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.27 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 98.24 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.24 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 98.22 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 98.22 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.22 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 98.22 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 98.22 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 98.22 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.2 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 98.2 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 98.2 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.18 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 98.17 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 98.16 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 98.14 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.13 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 98.11 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 98.1 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 98.09 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 98.09 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 98.09 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.09 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.08 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.08 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 98.07 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 98.07 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 98.06 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 98.06 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 98.06 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 98.04 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 98.03 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 98.03 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 98.0 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 98.0 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 98.0 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 97.99 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.96 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 97.94 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.93 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 97.9 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 97.89 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 97.88 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.87 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 97.87 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 97.83 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 97.82 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 97.82 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 97.81 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 97.81 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 97.8 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 97.79 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 97.77 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 97.77 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 97.76 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 97.76 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 97.74 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.74 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 97.71 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 97.69 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 97.69 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 97.69 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.67 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 97.67 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 97.64 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 97.62 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 97.62 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 97.62 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.56 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 97.55 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 97.49 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 97.49 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.44 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.39 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 97.36 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 97.35 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.35 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 97.32 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.23 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 97.22 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 97.2 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 97.19 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 97.17 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 97.15 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 97.13 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 97.11 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 97.06 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 97.03 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 97.0 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 96.99 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 96.96 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 96.96 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 96.92 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 96.89 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 96.87 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 96.86 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 96.83 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 96.82 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 96.82 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 96.8 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 96.78 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 96.77 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 96.77 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 96.77 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 96.76 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 96.75 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 96.74 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 96.74 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 96.74 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 96.74 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 96.73 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 96.73 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 96.73 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 96.73 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 96.72 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 96.71 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 96.7 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 96.7 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 96.7 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 96.69 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 96.69 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 96.69 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 96.68 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 96.68 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 96.68 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 96.64 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 96.64 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 96.63 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 96.62 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 96.61 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 96.61 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 96.61 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 96.61 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 96.59 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 96.58 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 96.58 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 96.58 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 96.57 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 96.57 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 96.51 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 96.51 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 96.5 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 96.48 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 96.47 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 96.45 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 96.44 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 96.41 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 96.39 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 96.37 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 96.36 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 96.35 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 96.32 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 96.29 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 96.24 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 96.24 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 96.2 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 96.2 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 96.19 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 96.07 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 96.02 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 96.01 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 95.98 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 95.92 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 95.9 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 95.86 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 95.86 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 95.82 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 95.78 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 95.77 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 95.71 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 95.69 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 95.69 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 95.67 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 95.66 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 95.66 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 95.65 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 95.63 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 95.55 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 95.51 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 95.48 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 95.44 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 95.43 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 95.4 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 95.35 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 95.34 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 95.3 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 95.29 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 95.26 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 95.24 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 95.24 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.17 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 95.16 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 95.13 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 95.02 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 94.95 | |
| 3elf_A | 349 | Fructose-bisphosphate aldolase; zinc enzyme, dihyd | 94.86 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 94.84 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 94.83 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 94.83 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 94.83 | |
| 2yr1_A | 257 | 3-dehydroquinate dehydratase; amino acid biosynthe | 94.82 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 94.8 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 94.78 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 94.72 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 94.68 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 94.57 | |
| 1sfl_A | 238 | 3-dehydroquinate dehydratase; 3-dehydroquinase, en | 94.55 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 94.54 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 94.51 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 94.5 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 94.42 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 94.34 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 94.33 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 94.28 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 94.28 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 94.25 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 94.24 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 94.22 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 94.19 | |
| 1dos_A | 358 | Aldolase class II; lyase, classii fructose 1,6-bis | 94.19 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 94.06 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 94.03 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 94.02 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 93.82 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 93.74 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 93.73 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 93.69 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 93.67 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 93.55 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 93.53 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 93.52 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 93.51 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 93.4 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 93.36 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 93.3 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 93.29 | |
| 2pcq_A | 283 | Putative dihydrodipicolinate synthase; lyase, lysi | 93.26 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 93.24 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 93.12 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 93.1 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 92.91 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 92.88 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 92.87 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 92.58 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 92.55 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 92.41 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 92.27 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 92.23 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 92.18 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 92.02 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 92.02 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 92.02 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 91.95 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 91.93 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 91.76 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 91.74 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 91.7 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 91.68 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 91.58 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 91.44 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 91.23 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 91.16 | |
| 3qm3_A | 357 | Fructose-bisphosphate aldolase; structural genomic | 91.11 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 90.91 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 90.87 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 90.86 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 90.84 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 90.8 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 90.8 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 90.74 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 90.57 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 90.55 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 90.52 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 90.51 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 90.5 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 90.42 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 90.36 | |
| 3l9c_A | 259 | 3-dehydroquinate dehydratase; AROD, amino-acid bio | 90.35 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 90.31 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 90.29 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 90.23 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 90.18 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 90.13 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 89.92 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 89.9 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 89.9 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 89.88 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 89.85 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 89.75 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 89.64 | |
| 2egz_A | 219 | 3-dehydroquinate dehydratase; aquifex aeolicus VF5 | 89.61 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 89.58 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 89.56 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 89.55 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 89.48 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 89.39 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 89.35 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 89.34 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 89.14 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 89.13 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 89.11 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 89.11 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 89.04 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 89.03 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 89.01 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 88.99 | |
| 2fiq_A | 420 | Putative tagatose 6-phosphate kinase 1; structural | 88.95 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 88.88 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 88.85 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 88.78 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 88.73 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 88.71 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 88.71 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 88.64 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 88.6 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 88.59 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 88.51 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 88.51 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 88.27 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 88.25 | |
| 1lt8_A | 406 | Betaine-homocysteine methyltransferase; homocystei | 88.23 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 88.18 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 88.15 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 88.15 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 88.13 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 87.99 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 87.99 | |
| 3chv_A | 284 | Prokaryotic domain of unknown function (DUF849) W | 87.88 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 87.85 | |
| 3e49_A | 311 | Uncharacterized protein DUF849 with A TIM barrel; | 87.81 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 87.63 | |
| 2ocz_A | 231 | 3-dehydroquinate dehydratase; structural genomics, | 87.61 | |
| 2y7e_A | 282 | 3-keto-5-aminohexanoate cleavage enzyme; lyase, al | 87.56 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 87.49 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 87.29 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 87.23 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 87.21 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 87.17 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 87.07 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 86.98 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 86.95 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 86.84 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 86.71 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 86.7 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 86.7 | |
| 3nwr_A | 432 | A rubisco-like protein; lyase; HET: KCX; 1.50A {Bu | 86.7 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 86.69 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 86.52 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 86.35 |
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=313.87 Aligned_cols=221 Identities=23% Similarity=0.300 Sum_probs=192.6
Q ss_pred cccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEE
Q psy4398 27 INYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIIL 106 (306)
Q Consensus 27 l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~iv 106 (306)
++++||+++|||+++|+.+||.+++++|+|+++|||+++.+.....+.. ++.+ .++.+.|+++
T Consensus 1 ~~l~nri~~APM~~~t~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~--------------~~~l---~~~~~~~~~~ 63 (318)
T 1vhn_A 1 MSLEVKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKT--------------EELL---PQPHERNVAV 63 (318)
T ss_dssp ----CEEEECCCTTTCSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHH--------------HHHS---CCTTCTTEEE
T ss_pred CccCCCEEECCCCCCCcHHHHHHHHHHCcCEEEeCCEEEcccccCCHhH--------------HHhh---hCcCCCeEEE
Confidence 4689999999999999999999998899999999999887754432211 1112 3346789999
Q ss_pred EecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHH
Q psy4398 107 QIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 107 ql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~ 186 (306)
||+|.++++|+++|+++++.||+||||++||+++.++++||++++++++++.++++++++.+++||+||+|.|++.++..
T Consensus 64 QL~g~~~~~~~~aa~~a~~~~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~ 143 (318)
T 1vhn_A 64 QIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVE 143 (318)
T ss_dssp EEECSCHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHH
T ss_pred EeCCCCHHHHHHHHHHHHHhCCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHH
Confidence 99999999999999999744999999999999999999999999999999999999999999999999999998877777
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVEK 262 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p~ 262 (306)
++++.++++|+|+|++|+++..+.+.++.+|++++++++ ++|||++|||+|.+++.++++. +|++||+++.||+
T Consensus 144 ~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~ 221 (318)
T 1vhn_A 144 EIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPW 221 (318)
T ss_dssp HHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTT
T ss_pred HHHHHHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcc
Confidence 999999999999999999988777777788999999988 8999999999999999999984 4699999999997
Q ss_pred chHH
Q psy4398 263 LPKT 266 (306)
Q Consensus 263 ~~~~ 266 (306)
+...
T Consensus 222 l~~~ 225 (318)
T 1vhn_A 222 IFKQ 225 (318)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7654
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=308.71 Aligned_cols=220 Identities=23% Similarity=0.337 Sum_probs=187.6
Q ss_pred ccCCceEEccCCCCCCHHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEE
Q psy4398 28 NYSNKIILAPMVRMNTLPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIIL 106 (306)
Q Consensus 28 ~l~n~i~lAPm~~~t~~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~iv 106 (306)
.|+|||++|||.++|+.+||.++++.| +|+++|||+++++....... .+.+ ++..+.|+++
T Consensus 1 ~l~nriv~APM~g~td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~-----------------~~~~-~~~~~~p~~v 62 (350)
T 3b0p_A 1 MLDPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRE-----------------RLLA-FRPEEHPIAL 62 (350)
T ss_dssp -CCCSEEECCCTTTSSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHH-----------------HHHC-CCGGGCSEEE
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHcCCCCEEEeCCEEechhhcCCHH-----------------HHhc-cCCCCCeEEE
Confidence 379999999999999999999987776 59999999998765432211 1112 2235679999
Q ss_pred EecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh---
Q psy4398 107 QIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE--- 182 (306)
Q Consensus 107 ql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~--- 182 (306)
||+|.++++|+++|+++++ |||+||||++||.+|.++++||++++++++++.++++++++.+++||++|+|.|++.
T Consensus 63 QL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~ 142 (350)
T 3b0p_A 63 QLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKET 142 (350)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCC
T ss_pred EeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCcccc
Confidence 9999999999999999975 999999999999999999999999999999999999999999999999999987653
Q ss_pred -HHHHHHHHHHHHcCCcEEEEcccCCCCCCC-------CCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHH--hhh
Q psy4398 183 -ADTIALCKRLEACGIIAIGVHGRTKAERPR-------HRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFS--LNC 251 (306)
Q Consensus 183 -~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~-------~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~--~~v 251 (306)
+++.++++.++++|+|+|++|+++..+.+. .+.+|++++++++.+ ++|||+||||.|.++++++++ .+|
T Consensus 143 ~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~GaD~V 222 (350)
T 3b0p_A 143 YRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLKRVDGV 222 (350)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhCCCEE
Confidence 468999999999999999999987643332 246899999999999 999999999999999999997 245
Q ss_pred hhccccCCCCCchH
Q psy4398 252 AFLRNHYPVEKLPK 265 (306)
Q Consensus 252 ~vGrall~~p~~~~ 265 (306)
++||+++.||++..
T Consensus 223 ~iGRa~l~~P~l~~ 236 (350)
T 3b0p_A 223 MLGRAVYEDPFVLE 236 (350)
T ss_dssp EECHHHHHCGGGGT
T ss_pred EECHHHHhCcHHHH
Confidence 99999999995554
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=299.85 Aligned_cols=248 Identities=12% Similarity=0.104 Sum_probs=198.8
Q ss_pred ccccccccccCCceEEccCCCCCC---------HH---HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNT---------LP---FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~---------~~---~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (306)
.|+++++++|+|||++|||++.+. .. |+..+ ++|+|+++||++.+.+.........+++++ ..+..
T Consensus 7 ~p~~ig~~~l~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA-~gG~gliite~~~v~~~g~~~~~~~~i~~d-~~~~~ 84 (338)
T 1z41_A 7 TPITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRA-IGQVGLIIVEASAVNPQGRITDQDLGIWSD-EHIEG 84 (338)
T ss_dssp SCEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHH-HTTCSEEEEEEEESSGGGCSSTTSCBCSST-HHHHH
T ss_pred CCeeECCEEEcCccEECCcCCCcCCCCCCCCCHHHHHHHHHHH-cCCCCEEEeCCeeccccccCCCCCcccCCH-HHHHH
Confidence 577999999999999999996542 23 33334 579999999999876543322222222221 11111
Q ss_pred CCCceeeecCCCCCCceEEEecCC-----------------------C------------HHHHHHHHHHHhc-CCCEEE
Q psy4398 88 LDGSVVFRTCPREKNKIILQIGTA-----------------------D------------PERALEAAKKVEH-DVAAID 131 (306)
Q Consensus 88 ~~~~~~~~~~~~~~~p~ivql~g~-----------------------~------------~~~~~~aa~~~~~-g~d~ve 131 (306)
++.+.+.+|+.+.++++||+|. . +++|+++|+++.+ |||+||
T Consensus 85 --~~~~~~~vh~~g~~i~~QL~h~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVe 162 (338)
T 1z41_A 85 --FAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIE 162 (338)
T ss_dssp --HHHHHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred --HHHHHHHHHhcCCEEEEEecCCCcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4556667777889999999874 2 2689999998874 999999
Q ss_pred EccCC---------CccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------CCChHHHHHHHHHHHHcC
Q psy4398 132 INMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------FHNEADTIALCKRLEACG 196 (306)
Q Consensus 132 ln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------g~~~~~~~~~a~~l~~~G 196 (306)
||++| |+.|.++|+||+++++|++++.|++++|+++++.||.||++. |++.++..++++.++++|
T Consensus 163 ih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~G 242 (338)
T 1z41_A 163 IHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQG 242 (338)
T ss_dssp EEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTT
T ss_pred eccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcC
Confidence 99986 999999999999999999999999999999999999999997 567888999999999999
Q ss_pred CcEEEEcccCCCCC--CCCC-CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhccccCCCCCchHHHHH
Q psy4398 197 IIAIGVHGRTKAER--PRHR-NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNHYPVEKLPKTILY 269 (306)
Q Consensus 197 ~d~i~v~~~~~~~~--~~~p-~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGrall~~p~~~~~~l~ 269 (306)
+|+|++++++.... ..++ .++++++++++.+++|||++|||+|+++++++++.+ +++||+++.||++++...+
T Consensus 243 vd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki~~ 322 (338)
T 1z41_A 243 VDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAK 322 (338)
T ss_dssp CCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHH
T ss_pred CCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHHHHc
Confidence 99999998764311 2233 478999999999999999999999999999999875 5999999999988876444
Q ss_pred HH
Q psy4398 270 AH 271 (306)
Q Consensus 270 ~~ 271 (306)
.+
T Consensus 323 ~~ 324 (338)
T 1z41_A 323 QL 324 (338)
T ss_dssp HT
T ss_pred CC
Confidence 43
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=296.32 Aligned_cols=245 Identities=12% Similarity=0.093 Sum_probs=197.5
Q ss_pred ccccccccccCCceEEccCCCC---------CCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM---------NTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~---------t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (306)
.|+++++++|+|||++|||+.. |+.....+. +++|+|+++||.+.+.+.........+++ +...+..
T Consensus 7 ~p~~ig~~~l~NRiv~apm~~~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~-~d~~i~~- 84 (340)
T 3gr7_A 7 SPYTIRGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIW-SDDHIAG- 84 (340)
T ss_dssp SCEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSEECS-STTHHHH-
T ss_pred CCEeECCEEEcCceEECCcCCCcccCCCCCCCHHHHHHHHHHhcCCceEEEEcceEecccccCCCCCcccC-CHHHHHH-
Confidence 6789999999999999999843 223333332 25789999999998776443333222332 2233322
Q ss_pred CCceeeecCCCCCCceEEEecCCC-----------------------------------HHHHHHHHHHHhc-CCCEEEE
Q psy4398 89 DGSVVFRTCPREKNKIILQIGTAD-----------------------------------PERALEAAKKVEH-DVAAIDI 132 (306)
Q Consensus 89 ~~~~~~~~~~~~~~p~ivql~g~~-----------------------------------~~~~~~aa~~~~~-g~d~vel 132 (306)
++.+.+.+|+.|.++++||++.+ .++|+++|+++++ |||+|||
T Consensus 85 -~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEi 163 (340)
T 3gr7_A 85 -LRELVGLVKEHGAAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEI 163 (340)
T ss_dssp -HHHHHHHHHHTTCEEEEEEECCGGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred -HHHHHHHHHhCCCeEEEEeccCCCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 66788888889999999997521 3689999999975 9999999
Q ss_pred ccC---------CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------CCChHHHHHHHHHHHHcCC
Q psy4398 133 NMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------FHNEADTIALCKRLEACGI 197 (306)
Q Consensus 133 n~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------g~~~~~~~~~a~~l~~~G~ 197 (306)
|++ ||+.|.++|+||+++++|++++.|++++||++++.||.||++. |++.++..++++.|+++|+
T Consensus 164 h~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gv 243 (340)
T 3gr7_A 164 HAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGV 243 (340)
T ss_dssp EECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTC
T ss_pred ccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCC
Confidence 999 5999999999999999999999999999999999999999996 3567889999999999999
Q ss_pred cEEEEccc-CCCCC-C-CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhccccCCCCCchHHH
Q psy4398 198 IAIGVHGR-TKAER-P-RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNHYPVEKLPKTI 267 (306)
Q Consensus 198 d~i~v~~~-~~~~~-~-~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGrall~~p~~~~~~ 267 (306)
|+|+++.. ..... . ....++++++++++.+++|||++|||+|+++++++++.+ |++||++++||++++..
T Consensus 244 d~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki 320 (340)
T 3gr7_A 244 DLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAA 320 (340)
T ss_dssp CEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHH
T ss_pred CEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHH
Confidence 99999853 22211 1 123478999999999999999999999999999999875 59999999999888653
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=301.30 Aligned_cols=263 Identities=11% Similarity=0.080 Sum_probs=207.8
Q ss_pred ccccc-cccccCCceEEccCCC--------CCCHHHHHHHHHc-CCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 20 ANANQ-ANINYSNKIILAPMVR--------MNTLPFRLLALDY-GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~-~~l~l~n~i~lAPm~~--------~t~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
.|+++ ++++|+|||++|||+. +|+.....+.+++ |+|+++||.+.+.+.........+++ +...+..
T Consensus 29 ~P~~i~g~~~lkNRiv~aPm~~~~a~~dg~~t~~~~~yy~~rA~G~GLiIte~~~V~~~g~~~~~~~gi~-~d~~i~~-- 105 (419)
T 3l5a_A 29 QSIHLPNGIKISNRFVLSPMTVNASTKEGYITKADLAYAARRSNSAGMQVTGAAYIEPYGKLFEYGFNID-HDACIPG-- 105 (419)
T ss_dssp SCEECTTSCEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHTTTSCSEEEEEEEESSGGGCCSTTCEECS-SGGGHHH--
T ss_pred CCEEeCCCCEECCCeEeCCCCCCccCCCCCCCHHHHHHHHHHhcCCcEEEecceEeCcccccCCCccccc-cHHHHHH--
Confidence 78899 9999999999999984 3344445554443 79999999998876543333222332 3333332
Q ss_pred CceeeecCCCCCCceEEEecCCC----------------------------------------HHHHHHHHHHHhc-CCC
Q psy4398 90 GSVVFRTCPREKNKIILQIGTAD----------------------------------------PERALEAAKKVEH-DVA 128 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~~----------------------------------------~~~~~~aa~~~~~-g~d 128 (306)
++.+.+++|+.|.++++||++.+ .++|++||+++.+ |||
T Consensus 106 ~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~vapS~i~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~~AGfD 185 (419)
T 3l5a_A 106 LTNMASTMKQHGSLAIIQLAHAGRFSNQAILNFGKVYGPSPMTLHSPIEHVVIAMSHEKINSIIQQYRDATLRAIKAGFD 185 (419)
T ss_dssp HHHHHHHHHTTSCEEEEEEECCGGGCHHHHHHHSEEEESSCEEECSSSSEEEEECCHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCCEEEEEeccCCCcccccccCCCceeCCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 67788888889999999997531 2679999999975 999
Q ss_pred EEEEccCC---------CccccccCCccccc-cCChHHHHHHHHHHHhcc------cccEEEEecc--------CCChHH
Q psy4398 129 AIDINMGC---------PKQFSLTGGMGAAL-LSTPDIACNILTTLISNL------SIPVSCKIRV--------FHNEAD 184 (306)
Q Consensus 129 ~veln~gc---------P~~~~~~~~~G~~l-~~~~~~~~eiv~~v~~~~------~~pv~vKir~--------g~~~~~ 184 (306)
+||||++| |..|.|+|+||+++ ++|++++.||+++|++++ ++||.+|++. |++.++
T Consensus 186 gVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed 265 (419)
T 3l5a_A 186 GVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDE 265 (419)
T ss_dssp EEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHH
T ss_pred EEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHH
Confidence 99999997 99999999999999 999999999999999987 5799999997 567889
Q ss_pred HHHHHHHHHH-cCCcEEEEcccCC-----CCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh--hhhh
Q psy4398 185 TIALCKRLEA-CGIIAIGVHGRTK-----AERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL--NCAF 253 (306)
Q Consensus 185 ~~~~a~~l~~-~G~d~i~v~~~~~-----~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~--~v~v 253 (306)
+.++++.|++ +|+|+|++++++. ...+.++ .++++++.+++.+ ++|||++|||+|+++++++++. +|++
T Consensus 266 ~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~aDlVai 345 (419)
T 3l5a_A 266 FNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQHADMVGM 345 (419)
T ss_dssp HHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHhCCcHHH
Confidence 9999999999 9999999998753 1122222 3567889999998 6999999999999999999986 5599
Q ss_pred ccccCCCCCchHHHHHHHHHhcCCCCCcceehhhc
Q psy4398 254 LRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYE 288 (306)
Q Consensus 254 Grall~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~ 288 (306)
||++++||+|+++..+.+.++- .+|+.|++++
T Consensus 346 GR~~IanPdlv~ki~~G~~~~I---~~ci~~~~~~ 377 (419)
T 3l5a_A 346 SSPFVTEPDFVHKLAEQRPHDI---NLEFSMADLE 377 (419)
T ss_dssp STHHHHCTTHHHHHHTTCGGGC---CCCCCGGGTT
T ss_pred HHHHHHCcHHHHHHHcCCcccc---eecCCHHHHH
Confidence 9999999999876433332221 5688887754
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=296.75 Aligned_cols=257 Identities=13% Similarity=0.038 Sum_probs=208.0
Q ss_pred eccc-ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhh--h---hhhhhcccccccccCCCC
Q psy4398 16 VLDM-ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK--T---ERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 16 ~~~~-~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~ 89 (306)
+.++ |++++.|++|+|||++|+++...+..+.......|+|++++++++.++... . .+...+++|++++.|+|.
T Consensus 32 ~~~~~L~~~~~Gl~~~NPv~lAAG~~~~~~e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~G~~n~G~ 111 (354)
T 4ef8_A 32 RGSMSLQVNLLNNTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGF 111 (354)
T ss_dssp --CCCCCEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCH
T ss_pred CCCCCcceEECCEECCCCCEeccCCCCCCHHHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecchhhhccCCCCCcCH
Confidence 3445 999999999999999999998677776665558899999999999775421 1 123467899999999976
Q ss_pred Cceeeec--C-CCCCCceEEEecCCCHHHHHHHHHHHh---c-CCCEEEEccCCCccccccCCccccccCChHHHHHHHH
Q psy4398 90 GSVVFRT--C-PREKNKIILQIGTADPERALEAAKKVE---H-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILT 162 (306)
Q Consensus 90 ~~~~~~~--~-~~~~~p~ivql~g~~~~~~~~aa~~~~---~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~ 162 (306)
...+.+. . ...+.|+++||+|.++++|.+++++++ + |+|+||||++||+.. + |..++.+++.+.++++
T Consensus 112 ~~~~~~l~~~~~~~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~----g-g~~l~~~~e~~~~il~ 186 (354)
T 4ef8_A 112 DFYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP----G-KPQVAYDFDAMRQCLT 186 (354)
T ss_dssp HHHHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCST----T-SCCGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCC----C-chhhccCHHHHHHHHH
Confidence 4432221 1 223679999999999999999999887 3 899999999999962 2 5678889999999999
Q ss_pred HHHhcccccEEEEeccCCChHHHHHHHHHHHHcC-CcEEEEcccC------------C-------CCCCCC----CCcHH
Q psy4398 163 TLISNLSIPVSCKIRVFHNEADTIALCKRLEACG-IIAIGVHGRT------------K-------AERPRH----RNRIE 218 (306)
Q Consensus 163 ~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G-~d~i~v~~~~------------~-------~~~~~~----p~~~~ 218 (306)
++++.+++||+||++.+++.++..++++.++++| +|+|++++.. . .+.+++ |.+|+
T Consensus 187 av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~ 266 (354)
T 4ef8_A 187 AVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALA 266 (354)
T ss_dssp HHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHH
T ss_pred HHHHhhCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHH
Confidence 9999999999999998888788889999999998 9999875422 0 112333 35799
Q ss_pred HHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCC-CCch-HH--HHHHHHHhcCC
Q psy4398 219 MIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPV-EKLP-KT--ILYAHCKYKRF 277 (306)
Q Consensus 219 ~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~-p~~~-~~--~l~~~~~~~g~ 277 (306)
+++++++.+ ++|||++|||.|.+|+.+.+..| ||+||+++.+ |.+. ++ +|++||+++|+
T Consensus 267 ~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~~~G~ 333 (354)
T 4ef8_A 267 NINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRY 333 (354)
T ss_dssp HHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHHHcCC
Confidence 999999997 79999999999999999999875 5999999886 9554 43 99999999994
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=294.28 Aligned_cols=260 Identities=15% Similarity=0.103 Sum_probs=212.2
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh-------hhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT-------ERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~ 92 (306)
+++++.|++|+|||++|++.+.+...+..+. ..|+|+++++++++.+.... .+...+++|++++.|+|....
T Consensus 50 L~~~~~Gl~~~NPvglAaG~~~~~~~~~~~~-~~g~G~v~~ktvt~~pq~GNp~PR~~~~~~~~~~iN~~G~~N~G~~~~ 128 (367)
T 3zwt_A 50 LEVRVLGHKFRNPVGIAAGFDKHGEAVDGLY-KMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVV 128 (367)
T ss_dssp GCEEETTEEESSSEEECTTSSTTSSSHHHHH-HTTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHH
T ss_pred CcEEECCEEcCCCCEeCCCcCCCHHHHHHHH-hcCcCeEEeCCccCCCCCCCCCCeEEEecCccceeeccCCCCccHHHH
Confidence 8999999999999999999987777777776 56999999999997764311 112247899999999986443
Q ss_pred eeecCC---------CCCCceEEEecCC-----CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHH
Q psy4398 93 VFRTCP---------REKNKIILQIGTA-----DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIAC 158 (306)
Q Consensus 93 ~~~~~~---------~~~~p~ivql~g~-----~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~ 158 (306)
+.+..+ ..+.|+++||+++ ++++|+++++.+.+++|+||||+|||+.. |..++++++.+.
T Consensus 129 ~~~l~~~~~~~~~~~~~~~pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~~------G~~~l~~~~~l~ 202 (367)
T 3zwt_A 129 EHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTA------GLRSLQGKAELR 202 (367)
T ss_dssp HHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHH
T ss_pred HHHHHHHhhhccccccCCceEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCCC------CccccCCHHHHH
Confidence 222211 1257999999886 68999999999988899999999999962 445778999999
Q ss_pred HHHHHHHhc-------ccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------CCCCCC----
Q psy4398 159 NILTTLISN-------LSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------ERPRHR---- 214 (306)
Q Consensus 159 eiv~~v~~~-------~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~~~~~p---- 214 (306)
++++++++. .++||+||++.+++.++..++|+.++++|+|+|++|+++.. +.++++
T Consensus 203 ~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p 282 (367)
T 3zwt_A 203 RLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRD 282 (367)
T ss_dssp HHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHH
T ss_pred HHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccch
Confidence 999999764 67999999998877788999999999999999999987632 223333
Q ss_pred CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhcccc-CCCCCc-hHH--HHHHHHHhcCCCCCcceeh
Q psy4398 215 NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNH-YPVEKL-PKT--ILYAHCKYKRFEVPKYETV 285 (306)
Q Consensus 215 ~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGral-l~~p~~-~~~--~l~~~~~~~g~~~~~~~~~ 285 (306)
..+++++++++.+ ++|||++|||.|.+|+.++++.| |++||++ +.||.+ .++ +|++||+++|
T Consensus 283 ~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~~~~i~~~l~~~m~~~G--------- 353 (367)
T 3zwt_A 283 LSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQG--------- 353 (367)
T ss_dssp HHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHHTT---------
T ss_pred hHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHHHHHHHHHHHHHHHHcC---------
Confidence 2468999999999 89999999999999999999875 5999998 568944 444 9999999999
Q ss_pred hhccceeeEEEEcCc
Q psy4398 286 QYEKLFRSLVTVNGK 300 (306)
Q Consensus 286 ~~~~~~~~~~~~~~~ 300 (306)
|+|+.+++|+
T Consensus 354 -----~~~i~e~~G~ 363 (367)
T 3zwt_A 354 -----FGGVTDAIGA 363 (367)
T ss_dssp -----CSSHHHHTTG
T ss_pred -----CCCHHHhhCc
Confidence 7777777775
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=289.39 Aligned_cols=245 Identities=13% Similarity=0.131 Sum_probs=197.3
Q ss_pred ccccccccccCCceEEccCCCC--------CCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM--------NTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--------t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
.|+++++++|+|||++|||+.. |+.....+. +++|+|+++||.+.+.+.........+++ +..++..
T Consensus 6 ~p~~ig~~~l~NRiv~apm~~~~~~~~g~~~~~~~~~y~~rA~gg~Glii~e~~~v~~~g~~~~~~~~i~-~d~~i~~-- 82 (349)
T 3hgj_A 6 TPLELGGLRLKNRLAMSPMCQYSATLEGEVTDWHLLHYPTRALGGVGLILVEATAVEPLGRISPYDLGIW-SEDHLPG-- 82 (349)
T ss_dssp SCEEETTEEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCS-SGGGHHH--
T ss_pred CCeeECCEEecCceEECCcCcCCcCCCCCCCHHHHHHHHHHhcCCceEEEecceeecccccCCCCcCccC-cHHHHHH--
Confidence 6779999999999999999953 233333332 25789999999998876543333222333 2233322
Q ss_pred CceeeecCCCCCCceEEEecCCC---------------------------------------------HHHHHHHHHHHh
Q psy4398 90 GSVVFRTCPREKNKIILQIGTAD---------------------------------------------PERALEAAKKVE 124 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~~---------------------------------------------~~~~~~aa~~~~ 124 (306)
++.+.+.+|+.|.++++||++.+ .++|+++|+++.
T Consensus 83 ~~~~~~~vh~~G~~i~~Ql~H~Gr~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~ 162 (349)
T 3hgj_A 83 LKELARRIREAGAVPGIQLAHAGRKAGTARPWEGGKPLGWRVVGPSPIPFDEGYPVPEPLDEAGMERILQAFVEGARRAL 162 (349)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCGGGCCBCCGGGTCCBCCCCCEESSSCCSSTTCCCCEECCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeccCCccccccccccccccCCCcccCCCcccccCCCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 66788888888999999996410 267999999987
Q ss_pred c-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc------CCChHHHH
Q psy4398 125 H-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV------FHNEADTI 186 (306)
Q Consensus 125 ~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~------g~~~~~~~ 186 (306)
+ |||+||||++| |+.|.++|+||+++++|++++.|++++||+++ ++||.||++. |++.++..
T Consensus 163 ~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~ 242 (349)
T 3hgj_A 163 RAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTL 242 (349)
T ss_dssp HTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHH
T ss_pred HcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHH
Confidence 5 99999999999 99999999999999999999999999999999 6899999997 57788999
Q ss_pred HHHHHHHHcCCcEEEEcc-cCCCC--CCC-CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhccccC
Q psy4398 187 ALCKRLEACGIIAIGVHG-RTKAE--RPR-HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNHY 258 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~-~~~~~--~~~-~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGrall 258 (306)
++++.|+++|+|+|+++. +.... .+. ...++++++++++.+++|||++|||+|+++++++++.+ +++||+++
T Consensus 243 ~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~l 322 (349)
T 3hgj_A 243 AFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLL 322 (349)
T ss_dssp HHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHH
T ss_pred HHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEecHHHH
Confidence 999999999999999984 33211 111 22578999999999999999999999999999999875 59999999
Q ss_pred CCCCchHHH
Q psy4398 259 PVEKLPKTI 267 (306)
Q Consensus 259 ~~p~~~~~~ 267 (306)
+||+++++.
T Consensus 323 anPdl~~k~ 331 (349)
T 3hgj_A 323 RDPYFPLRA 331 (349)
T ss_dssp HCTTHHHHH
T ss_pred hCchHHHHH
Confidence 999888653
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=297.88 Aligned_cols=242 Identities=15% Similarity=0.153 Sum_probs=195.6
Q ss_pred ccccccccccCCceEEccCCCC-------CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRM-------NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~-------t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
.|+++++++|+|||++|||+.. |+..++.+++++|+|+++||++.+.+.........++++. ..+.. ++.
T Consensus 13 ~P~~ig~~~l~NRiv~aPm~~~~a~~g~pt~~~~~~y~~rA~~GLiitE~~~v~~~g~~~~~~~gi~~d-~~i~~--~k~ 89 (377)
T 2r14_A 13 TPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTD-AQEAG--WKG 89 (377)
T ss_dssp SCEEETTEEESCSEEECCCCCCCCTTSCCCHHHHHHHHHTTTSSCEEEEEEESSGGGCCBTTCCBSSSH-HHHHH--HHH
T ss_pred CCeeECCEEecCCeEECCCcCCcCCCCCCCHHHHHHHHHHhcCCEEEEcceeeccccccCCCCcccCCH-HHHHH--HHH
Confidence 6789999999999999999965 7788899988899999999999886543322222222221 12111 455
Q ss_pred eeecCCCCCCceEEEecCC-------------------------------------------CH------------HHHH
Q psy4398 93 VFRTCPREKNKIILQIGTA-------------------------------------------DP------------ERAL 117 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~-------------------------------------------~~------------~~~~ 117 (306)
+.+.+|+.|.++++||+|. .| ++|+
T Consensus 90 l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~ 169 (377)
T 2r14_A 90 VVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYR 169 (377)
T ss_dssp HHHHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEccCCccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCHHHHHHHHHHHH
Confidence 6677777889999999861 22 6899
Q ss_pred HHHHHHhc-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhcccc-cEEEEeccC-------
Q psy4398 118 EAAKKVEH-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLSI-PVSCKIRVF------- 179 (306)
Q Consensus 118 ~aa~~~~~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~g------- 179 (306)
++|+++.+ |||+||||++| |..|.++|+||+++++|++++.|++++||++++. ||.||++..
T Consensus 170 ~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~ 249 (377)
T 2r14_A 170 QAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLT 249 (377)
T ss_dssp HHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCC
T ss_pred HHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCC
Confidence 99999875 99999999997 9999999999999999999999999999999953 999999863
Q ss_pred --CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhh
Q psy4398 180 --HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAF 253 (306)
Q Consensus 180 --~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~v 253 (306)
++.++..++++.|+++|+|+|++++++..+.+.. ..+++++++++.+++|||++||| ++++++++++.+ |++
T Consensus 250 ~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~ik~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~i 327 (377)
T 2r14_A 250 DDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT-YPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAF 327 (377)
T ss_dssp CSCHHHHHHHHHHHHHHTTCSEEEEECCC------C-CCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCc-chHHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHCCCceEEee
Confidence 2356789999999999999999998754332222 25788999999999999999999 699999999874 599
Q ss_pred ccccCCCCCchHH
Q psy4398 254 LRNHYPVEKLPKT 266 (306)
Q Consensus 254 Grall~~p~~~~~ 266 (306)
||++++||++++.
T Consensus 328 gR~~l~~P~l~~k 340 (377)
T 2r14_A 328 GRPFIANPDLPER 340 (377)
T ss_dssp SHHHHHCTTHHHH
T ss_pred cHHHHhCchHHHH
Confidence 9999999988865
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-38 Score=290.32 Aligned_cols=260 Identities=15% Similarity=0.115 Sum_probs=203.2
Q ss_pred ccccccccccCCceEEccCCCC--------CCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM--------NTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--------t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
.|+++++++|+|||++|||+.. |+.....+. +++|+|+++||.+.+.+.........+++ +...+..
T Consensus 6 ~P~~ig~~~l~NRiv~apm~~~~~~~~g~~t~~~~~yy~~rA~gG~Gliite~~~V~~~g~~~~~~~gi~-~d~~i~~-- 82 (343)
T 3kru_A 6 MPLKIKDITIKNRIMMSPMCMYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVESRGRITDHDLGIW-NDEQVKE-- 82 (343)
T ss_dssp SCEEETTEEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCS-SHHHHHH--
T ss_pred ccceeeeeeeeeeecccchhheecccCCCCCceeeeeeehhhccceeeeeehhhhhhhcCcccccccccc-CHHHHHH--
Confidence 6779999999999999999942 333333332 25789999999998776543333222332 2223322
Q ss_pred CceeeecCCCCCCceEEEecCCC------------------------------------HHHHHHHHHHHhc-CCCEEEE
Q psy4398 90 GSVVFRTCPREKNKIILQIGTAD------------------------------------PERALEAAKKVEH-DVAAIDI 132 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~~------------------------------------~~~~~~aa~~~~~-g~d~vel 132 (306)
++.+.+.+|+.|.++++||++.+ .++|+++|+++++ |||+|||
T Consensus 83 ~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~g~~~~apS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVEi 162 (343)
T 3kru_A 83 LKKIVDICKANGAVMGIQLAHAGRKCNISYEDVVGPSPIKAGDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEI 162 (343)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCGGGCCCTTSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhcCCceEeeehhhccCccCcchhhccCCCcCCCCccccCchhcCHHHHHHHHHHHHHHHhhccccCCceEEE
Confidence 66788888888999999997521 3689999999975 9999999
Q ss_pred c---------cCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc------CCChHHHHHHHHHHHHc
Q psy4398 133 N---------MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV------FHNEADTIALCKRLEAC 195 (306)
Q Consensus 133 n---------~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~------g~~~~~~~~~a~~l~~~ 195 (306)
| |.||..|.++|+||+++++|++++.|++++||+++ ++||.||++. |++.++..++++.|+++
T Consensus 163 h~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~ 242 (343)
T 3kru_A 163 HAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK 242 (343)
T ss_dssp EECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT
T ss_pred ecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc
Confidence 9 67999999999999999999999999999999999 6899999997 35678899999999999
Q ss_pred CCcEEEE-cccCCCCC--CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhccccCCCCCchHHHH
Q psy4398 196 GIIAIGV-HGRTKAER--PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNHYPVEKLPKTIL 268 (306)
Q Consensus 196 G~d~i~v-~~~~~~~~--~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGrall~~p~~~~~~l 268 (306)
+|+|++ +++..... .....++++++++++.+++|||++|||+|+++++++++.+ |++||++++||+|+++..
T Consensus 243 -vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~~k~~ 321 (343)
T 3kru_A 243 -VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVALGRELLRNPYWVLHTY 321 (343)
T ss_dssp -CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHTC
T ss_pred -ccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCeEEEEEe
Confidence 999999 45543321 1122478999999999999999999999999999999874 599999999998887632
Q ss_pred HHHHHhcCCCCCcceehhhcccee
Q psy4398 269 YAHCKYKRFEVPKYETVQYEKLFR 292 (306)
Q Consensus 269 ~~~~~~~g~~~~~~~~~~~~~~~~ 292 (306)
| .......||.+.|.
T Consensus 322 -------~--~~~~~~~~~~~~~~ 336 (343)
T 3kru_A 322 -------T--SKEDWPKQYERAFK 336 (343)
T ss_dssp -------S--SGGGSCGGGGGGCC
T ss_pred -------c--ccccchHHHHHHHH
Confidence 3 22334556666664
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=291.03 Aligned_cols=241 Identities=15% Similarity=0.139 Sum_probs=194.3
Q ss_pred ccccccccccCCceEEccCCCCC---------CHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMN---------TLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t---------~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|+++++++|+|||++|||+..+ +..++.+++++|+|+++||++.+.+.........++++. ..+.. +
T Consensus 7 ~P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~~GLiite~~~v~~~g~~~~~~~gi~~d-~~i~~--~ 83 (365)
T 2gou_A 7 QPITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVSEGTQISPTAKGYAWTPGIYTP-EQIAG--W 83 (365)
T ss_dssp SCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSSH-HHHHH--H
T ss_pred CCeeECCEEEcCceEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEECceeecccccCCCCCCccCCH-HHHHH--H
Confidence 56799999999999999999764 456888888889999999999876543322222222221 12111 4
Q ss_pred ceeeecCCCCCCceEEEecC------------------------------------------CCH------------HHH
Q psy4398 91 SVVFRTCPREKNKIILQIGT------------------------------------------ADP------------ERA 116 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g------------------------------------------~~~------------~~~ 116 (306)
+.+.+.+|+.+.++++||+| ..| ++|
T Consensus 84 ~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f 163 (365)
T 2gou_A 84 RIVTEAVHAKGCAIFAQLWHVGRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADY 163 (365)
T ss_dssp HHHHHHHHHHSCEEEEEEECCTTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEeecCCCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCHHHHHHHHHHH
Confidence 55666777788899999975 112 689
Q ss_pred HHHHHHHhc-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhcccc-cEEEEecc-CC----
Q psy4398 117 LEAAKKVEH-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLSI-PVSCKIRV-FH---- 180 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~-g~---- 180 (306)
+++|+++.+ |||+||||++| |+.|.++|+||+++++|++++.|++++||++++. ||.||++. ++
T Consensus 164 ~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~ 243 (365)
T 2gou_A 164 RQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGT 243 (365)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSC
T ss_pred HHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCC
Confidence 999998874 99999999987 9999999999999999999999999999999853 99999997 22
Q ss_pred ----ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hh
Q psy4398 181 ----NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CA 252 (306)
Q Consensus 181 ----~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~ 252 (306)
+.++..++++.++++|+|+|++++++..+.. ...+++++++++.+++|||++||| |+++++++++.+ |+
T Consensus 244 ~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--~~~~~~~~~i~~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~ 320 (365)
T 2gou_A 244 VDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAP--DTPVSFKRALREAYQGVLIYAGRY-NAEKAEQAINDGLADMIG 320 (365)
T ss_dssp CCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCC--CCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCC--CccHHHHHHHHHHCCCcEEEeCCC-CHHHHHHHHHCCCcceeh
Confidence 3456899999999999999999987532211 135788999999999999999999 899999999874 59
Q ss_pred hccccCCCCCchHH
Q psy4398 253 FLRNHYPVEKLPKT 266 (306)
Q Consensus 253 vGrall~~p~~~~~ 266 (306)
+||+++.||++++.
T Consensus 321 igR~~i~~P~l~~~ 334 (365)
T 2gou_A 321 FGRPFIANPDLPER 334 (365)
T ss_dssp CCHHHHHCTTHHHH
T ss_pred hcHHHHhCchHHHH
Confidence 99999999988765
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=289.66 Aligned_cols=241 Identities=14% Similarity=0.172 Sum_probs=194.5
Q ss_pred ccccccccccCCceEEccCCCC---------CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM---------NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~---------t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|+++++++|+|||++|||+.. |+..++.+++++|+|+++||++.+.+.........++++. ..+.. +
T Consensus 7 ~P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg~GLiite~~~v~~~g~~~~~~~gi~~d-~~i~~--~ 83 (364)
T 1vyr_A 7 TPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSP-EQIAA--W 83 (364)
T ss_dssp SCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSH-HHHHH--H
T ss_pred CCeeECCEEECCccEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEEccccccccccCCCCCcccCCH-HHHHH--H
Confidence 5679999999999999999964 4566888888889999999999876543222222222221 11111 4
Q ss_pred ceeeecCCCCCCceEEEecC------------------------------------------CCH------------HHH
Q psy4398 91 SVVFRTCPREKNKIILQIGT------------------------------------------ADP------------ERA 116 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g------------------------------------------~~~------------~~~ 116 (306)
+.+.+.+|+.+.++++||+| ..| ++|
T Consensus 84 ~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f 163 (364)
T 1vyr_A 84 KKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDF 163 (364)
T ss_dssp HHHHHHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEeccCCcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHHHHH
Confidence 55666777788999999975 122 689
Q ss_pred HHHHHHHhc-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccC--C---
Q psy4398 117 LEAAKKVEH-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVF--H--- 180 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g--~--- 180 (306)
+++|+++.+ |||+||||++| |..|.++|+||+++++|++++.|++++||++++ .||.||++.+ +
T Consensus 164 ~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~ 243 (364)
T 1vyr_A 164 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 243 (364)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTB
T ss_pred HHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccc
Confidence 999998875 99999999986 999999999999999999999999999999994 3999999975 2
Q ss_pred -----ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----h
Q psy4398 181 -----NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----C 251 (306)
Q Consensus 181 -----~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v 251 (306)
+.++..++++.|+++|+|+|++++++..+.. +..+++++++++.+++|||++||| ++++++++++.+ |
T Consensus 244 ~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--~~~~~~~~~v~~~~~iPvi~~Ggi-t~~~a~~~l~~g~aD~V 320 (364)
T 1vyr_A 244 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK--PYSEAFRQKVRERFHGVIIGAGAY-TAEKAEDLIGKGLIDAV 320 (364)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCC--CCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEE
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCC--cccHHHHHHHHHHCCCCEEEECCc-CHHHHHHHHHCCCccEE
Confidence 2345888999999999999999987543322 236789999999999999999999 899999999874 5
Q ss_pred hhccccCCCCCchHH
Q psy4398 252 AFLRNHYPVEKLPKT 266 (306)
Q Consensus 252 ~vGrall~~p~~~~~ 266 (306)
++||++++||++++.
T Consensus 321 ~~gR~~l~~P~~~~~ 335 (364)
T 1vyr_A 321 AFGRDYIANPDLVAR 335 (364)
T ss_dssp EESHHHHHCTTHHHH
T ss_pred EECHHHHhChhHHHH
Confidence 999999999988865
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=287.27 Aligned_cols=259 Identities=13% Similarity=0.118 Sum_probs=203.9
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhh-----hhhhhhcccccccccCCCCCceee
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK-----TERKVNDLLNTIDFVDPLDGSVVF 94 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~ 94 (306)
+++++.|++|+|||++|+++...+..+.......|+|++++++++.++... -.+...+++|++++.|+|....+.
T Consensus 38 L~~~~~Gl~~~NPv~lAaG~~~~~~e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~n~G~~~~~~ 117 (345)
T 3oix_A 38 THTTIGSFDFDNCLMNAAGVYCMTREELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPNLGINYYLD 117 (345)
T ss_dssp CCEEETTEEESCSEEECTTSSCSSHHHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCBSCHHHHHH
T ss_pred cCeEECCEECCCCCEEcCCCCCCCHHHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCCChhHHHHHH
Confidence 889999999999999999998788777776668999999999999875421 112335789999999998654322
Q ss_pred ecC----CCCCCceEEEecCCCHHHHHHHHHHHhc-CCC-EEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 95 RTC----PREKNKIILQIGTADPERALEAAKKVEH-DVA-AIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 95 ~~~----~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d-~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
+.. ...+.|+++||+|.++++|.++++++++ +++ +||||++||+.. + |..++++++.+.++++++++.+
T Consensus 118 ~l~~~~~~~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~----G-~~~l~~~~e~l~~il~av~~~~ 192 (345)
T 3oix_A 118 YVTELQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVP----G-XPQIAYDFETTDQILSEVFTYF 192 (345)
T ss_dssp HHHHHHHSTTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCST----T-CCCGGGCHHHHHHHHHHHTTTC
T ss_pred HHHHHhhccCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcC----C-chhhcCCHHHHHHHHHHHHHHh
Confidence 221 2346799999999999999999999974 776 999999999963 2 4677899999999999999999
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEE-------------EcccCC-------CCCCCCCC----cHHHHHHHH
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIG-------------VHGRTK-------AERPRHRN----RIEMIRTLT 224 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~-------------v~~~~~-------~~~~~~p~----~~~~v~~i~ 224 (306)
++||+||++.+. +..++++.++++|+++|+ ++.+.. .+.+++++ .++++++++
T Consensus 193 ~~PV~vKi~p~~---~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~ 269 (345)
T 3oix_A 193 TKPLGIKLPPYF---DIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFY 269 (345)
T ss_dssp CSCEEEEECCCC---CHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHH
T ss_pred CCCeEEEECCCC---CHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHH
Confidence 999999999654 355666666666655443 333221 12244443 478999999
Q ss_pred hhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccc-cCCCCCc-hHH--HHHHHHHhcCCCCCcceehhhccceeeEE
Q psy4398 225 QHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRN-HYPVEKL-PKT--ILYAHCKYKRFEVPKYETVQYEKLFRSLV 295 (306)
Q Consensus 225 ~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGra-ll~~p~~-~~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 295 (306)
+++ ++|||++|||.|.+|+.+.+..| |++||+ ++.||.+ .++ +|++||+++| |+++.
T Consensus 270 ~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~~i~~~L~~~l~~~G--------------~~si~ 335 (345)
T 3oix_A 270 KRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIMTEKG--------------YETLE 335 (345)
T ss_dssp TTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHHHT--------------CCSGG
T ss_pred HHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHHHHHHHHHHHHHHcC--------------CCCHH
Confidence 999 79999999999999999999875 499999 7899944 444 9999999999 66666
Q ss_pred EEcCc
Q psy4398 296 TVNGK 300 (306)
Q Consensus 296 ~~~~~ 300 (306)
+++|+
T Consensus 336 e~~G~ 340 (345)
T 3oix_A 336 DFRGK 340 (345)
T ss_dssp GTTTC
T ss_pred HHHhH
Confidence 66665
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=290.32 Aligned_cols=260 Identities=16% Similarity=0.124 Sum_probs=205.3
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh-----h--hhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT-----E--RKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-----~--~~~~~~l~~~~~~~~~~~~~ 92 (306)
+++++.|++|+|||++|++.+.+...+..+. +.|+|++.++++++.+.... . ....+++|.++|.|+|....
T Consensus 84 l~v~~~Gl~f~NPvglAAG~dk~~~~~~~l~-~lGfG~vevgtvT~~pq~GNp~PRlfrl~e~~aiiN~~GfnN~G~d~~ 162 (415)
T 3i65_A 84 ACTNIKHLDFINPFGVAAGFDKNGVCIDSIL-KLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKV 162 (415)
T ss_dssp GCEEETTEEESSSEEECTTSSTTCSSHHHHH-TTTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCSCBCCHHHH
T ss_pred ccEEECCEECCCCCEECCCCCCCHHHHHHHH-HcCCCeEEeCcccCCcCCCCCCCeEEeccCCCceeecCCCCchhHHHH
Confidence 7899999999999999999987777776665 78999999999998764311 1 13457899999999986433
Q ss_pred eeecCC---C-------CCCceEEEecCCC-----HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHH
Q psy4398 93 VFRTCP---R-------EKNKIILQIGTAD-----PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157 (306)
Q Consensus 93 ~~~~~~---~-------~~~p~ivql~g~~-----~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~ 157 (306)
+.+..+ . ...++++||+++. +++|.++++++.+.+|+||||+|||++. |..++++++.+
T Consensus 163 ~~~l~~~~~~~~~~~~~~~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~ad~ieiNiScPNt~------Gl~~lq~~~~l 236 (415)
T 3i65_A 163 TENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKL 236 (415)
T ss_dssp HHHHHHHHHHHTTCGGGTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCCC--------------CCHHH
T ss_pred HHHHHHHHhhccccccccCceEEEEeccccCccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------CcccccCHHHH
Confidence 222110 0 1357999999887 8999999999988899999999999962 67788999999
Q ss_pred HHHHHHHHhc--------------------cccc-EEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC--------
Q psy4398 158 CNILTTLISN--------------------LSIP-VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------- 208 (306)
Q Consensus 158 ~eiv~~v~~~--------------------~~~p-v~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------- 208 (306)
.++++++++. ..+| |+||++.+++.++..++|+.++++|+|+|++++++..
T Consensus 237 ~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~ 316 (415)
T 3i65_A 237 KNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFE 316 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGT
T ss_pred HHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccc
Confidence 9999999876 2689 9999998777778999999999999999999987642
Q ss_pred ---CCCCCCC----cHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCC-CCch-HH--HHHHHH
Q psy4398 209 ---ERPRHRN----RIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPV-EKLP-KT--ILYAHC 272 (306)
Q Consensus 209 ---~~~~~p~----~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~-p~~~-~~--~l~~~~ 272 (306)
+.+++++ .+++++++++++ ++|||++|||.|.+|+.+++..| ||+||+++.+ |.+. ++ +|++||
T Consensus 317 ~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l 396 (415)
T 3i65_A 317 NKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLL 396 (415)
T ss_dssp TCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHHHHHH
T ss_pred cccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHHHHHH
Confidence 2344443 458999999999 79999999999999999999885 4999998654 8544 44 999999
Q ss_pred HhcCCCCCcceehhhccceeeEEEEcCc
Q psy4398 273 KYKRFEVPKYETVQYEKLFRSLVTVNGK 300 (306)
Q Consensus 273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (306)
+++| |+|+.+++|+
T Consensus 397 ~~~G--------------~~si~e~~G~ 410 (415)
T 3i65_A 397 YQRG--------------YYNLKEAIGR 410 (415)
T ss_dssp HHTT--------------CSSSTTTTTT
T ss_pred HHcC--------------CCCHHHHhCh
Confidence 9999 6666666664
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=282.56 Aligned_cols=263 Identities=14% Similarity=0.111 Sum_probs=209.0
Q ss_pred cccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh-----hhhhhcccccccccCCCCCcee
Q psy4398 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT-----ERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 19 ~~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
++|++++|++|+|||++||+....+..++..+.++|+|+++|+++++++.... .+...+++|.+++.|++.....
T Consensus 1 ~l~~~i~g~~l~npv~~Aag~~~~~~~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~ 80 (311)
T 1jub_A 1 MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYL 80 (311)
T ss_dssp CCCEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHH
T ss_pred CCceEECCEEcCCCcEECCCCCCCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCccHHHHH
Confidence 36889999999999999998733477787777899999999999998764211 1122466788888887643211
Q ss_pred e--ecCC-CC--CCceEEEecCCCHHHHHHHHHHHhc-CCC-EEEEccCCCccccccCCccccccCChHHHHHHHHHHHh
Q psy4398 94 F--RTCP-RE--KNKIILQIGTADPERALEAAKKVEH-DVA-AIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS 166 (306)
Q Consensus 94 ~--~~~~-~~--~~p~ivql~g~~~~~~~~aa~~~~~-g~d-~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~ 166 (306)
. .... .. +.|+++||.+.++++|.++++++++ |+| +||||++||+. .. +..+..+++.+.++++++++
T Consensus 81 ~~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~-~g----~~~~g~~~e~~~~iv~~vr~ 155 (311)
T 1jub_A 81 DYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNV-PG----EPQLAYDFEATEKLLKEVFT 155 (311)
T ss_dssp HHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS-SS----CCCGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC-CC----cccccCCHHHHHHHHHHHHH
Confidence 1 1111 12 6799999999999999999999975 999 99999999996 11 34555689999999999999
Q ss_pred cccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccC-----CC--------------CCCCCC----CcHHHHHHH
Q psy4398 167 NLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT-----KA--------------ERPRHR----NRIEMIRTL 223 (306)
Q Consensus 167 ~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~-----~~--------------~~~~~p----~~~~~v~~i 223 (306)
.+++||++|++.+++.++..++|+.++++|+|+|++++++ .+ +.++++ ..+++++++
T Consensus 156 ~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v 235 (311)
T 1jub_A 156 FFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAF 235 (311)
T ss_dssp TCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHH
Confidence 9999999999987777788999999999999999998864 11 112232 348899999
Q ss_pred HhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCch-HH--HHHHHHHhcCCCCCcceehhhccceeeE
Q psy4398 224 TQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLP-KT--ILYAHCKYKRFEVPKYETVQYEKLFRSL 294 (306)
Q Consensus 224 ~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~-~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 294 (306)
++.+ ++|||++|||.|.+|+.++++.| |++||+++. ||.+. ++ ++++||+++| |+|+
T Consensus 236 ~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~l~~~l~~~g--------------~~si 301 (311)
T 1jub_A 236 YTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKG--------------YQSI 301 (311)
T ss_dssp HTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHHHT--------------CCSG
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHHHHHHHHHHHHHHHHcC--------------CCCH
Confidence 9999 89999999999999999999875 499999996 99544 43 9999999999 6666
Q ss_pred EEEcCc
Q psy4398 295 VTVNGK 300 (306)
Q Consensus 295 ~~~~~~ 300 (306)
.+++|+
T Consensus 302 ~e~~g~ 307 (311)
T 1jub_A 302 ADFHGK 307 (311)
T ss_dssp GGTTTC
T ss_pred HHHhCh
Confidence 666664
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=288.94 Aligned_cols=244 Identities=15% Similarity=0.151 Sum_probs=189.4
Q ss_pred ccccccccccCCceEEccCCCCC-------CHHHHHHHHHc-CCCEEEecceechhhhhhhhhhhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVRMN-------TLPFRLLALDY-GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t-------~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (306)
.|+++++++|+|||++|||+..+ +.....+.+++ |+|+++||++.+.+.........++++ ...+.. ++
T Consensus 18 ~P~~ig~~~l~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~g~GLiite~~~v~~~g~~~~~~~gi~~-d~~i~~--~k 94 (376)
T 1icp_A 18 SPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWT-KEQVEA--WK 94 (376)
T ss_dssp SCEEETTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSS-HHHHHH--HH
T ss_pred CCeeECCEEECCccEECCcCcCcCCCCCCCHHHHHHHHHhcCCeeEEEECceeeccccccCcccCccCC-HHHHHH--HH
Confidence 67899999999999999999754 33333344344 799999999988754332222222222 111111 45
Q ss_pred eeeecCCCCCCceEEEecCC--------------------------------------CH------------HHHHHHHH
Q psy4398 92 VVFRTCPREKNKIILQIGTA--------------------------------------DP------------ERALEAAK 121 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~--------------------------------------~~------------~~~~~aa~ 121 (306)
.+.+.+|+.|.++++||+|. .| ++|+++|+
T Consensus 95 ~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~AA~ 174 (376)
T 1icp_A 95 PIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAAR 174 (376)
T ss_dssp HHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEeecCCCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 56667777889999999871 12 68999999
Q ss_pred HHhc-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhcccc-cEEEEeccC---------CC
Q psy4398 122 KVEH-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLSI-PVSCKIRVF---------HN 181 (306)
Q Consensus 122 ~~~~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~g---------~~ 181 (306)
++.+ |||+||||++| |..|.++|+||+++++|++++.|++++||++++. ||.||++.. ++
T Consensus 175 ~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~ 254 (376)
T 1icp_A 175 NAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNP 254 (376)
T ss_dssp HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCH
T ss_pred HHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCC
Confidence 9874 99999999986 9999999999999999999999999999999953 999999963 12
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhcccc
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNH 257 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGral 257 (306)
.++..++++.|+++|+|+|++++++.........++++++++++.+++|||++||| +.++++++++.+ |++||++
T Consensus 255 ~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~ 333 (376)
T 1icp_A 255 TALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLF 333 (376)
T ss_dssp HHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHH
Confidence 34689999999999999999998764322212235567899999999999999999 899999999874 5999999
Q ss_pred CCCCCchHHH
Q psy4398 258 YPVEKLPKTI 267 (306)
Q Consensus 258 l~~p~~~~~~ 267 (306)
++||+++++.
T Consensus 334 l~~P~l~~k~ 343 (376)
T 1icp_A 334 ISNPDLPKRF 343 (376)
T ss_dssp HHCTTHHHHH
T ss_pred HhCccHHHHH
Confidence 9999888653
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=283.62 Aligned_cols=245 Identities=15% Similarity=0.159 Sum_probs=195.1
Q ss_pred ccccccccccCCceEEccCCCC-------CCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM-------NTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~-------t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|+++++++|+|||++|||+.. |+.....+. +++|+|+++||.+.+.+.........+++ +...+.. +
T Consensus 6 ~P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~-~d~~i~~--~ 82 (363)
T 3l5l_A 6 EPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPEGRITPGCAGIW-SDAHAQA--F 82 (363)
T ss_dssp SCEEETTEEESSSEEECCCCCCCCBTTBCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTCCBCS-SHHHHHH--H
T ss_pred CCeeECCEEeeCceEECCCCCCcCCCCCCCHHHHHHHHHHHccCceEEEecceeeCccccCCCCcceec-CHHHHHH--H
Confidence 6779999999999999999953 334444443 25789999999998776543333222332 2222322 5
Q ss_pred ceeeecCCCCCCceEEEecCC------------------------------------C----------------HHHHHH
Q psy4398 91 SVVFRTCPREKNKIILQIGTA------------------------------------D----------------PERALE 118 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~------------------------------------~----------------~~~~~~ 118 (306)
+.+.+.+|+.|.++++||++. + .++|++
T Consensus 83 ~~~~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~~p~~mt~~eI~~ii~~f~~ 162 (363)
T 3l5l_A 83 VPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVD 162 (363)
T ss_dssp HHHHHHHHHTTCEEEEEEECCGGGCSBCCGGGTSSBCCTTCTTCCCCEESSSCCCBTTBCCCCEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEeccCCccccccccccccccccccccCCCcccCCCCCccCCCCCCCCccCCHHHHHHHHHHHHH
Confidence 667788888888999999641 0 257999
Q ss_pred HHHHHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccC-------
Q psy4398 119 AAKKVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVF------- 179 (306)
Q Consensus 119 aa~~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g------- 179 (306)
+|+++++ |||+||||++ ||+.|.|+|+||+++++|++++.|++++||+++ ++||.||++..
T Consensus 163 aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~ 242 (363)
T 3l5l_A 163 AARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDE 242 (363)
T ss_dssp HHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHH
T ss_pred HHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCC
Confidence 9999975 9999999987 799999999999999999999999999999999 57999999962
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCC---CCCC-CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----h
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAER---PRHR-NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----C 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~---~~~p-~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v 251 (306)
++.++..++++.|+++|+|+|+++.+..... ..++ .++++++++++.+++|||++|||+|+++++++++.+ |
T Consensus 243 ~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V 322 (363)
T 3l5l_A 243 QTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLV 322 (363)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEE
Confidence 4567899999999999999999987532211 1122 478899999999999999999999999999999875 5
Q ss_pred hhccccCCCCCchHHH
Q psy4398 252 AFLRNHYPVEKLPKTI 267 (306)
Q Consensus 252 ~vGrall~~p~~~~~~ 267 (306)
++||++++||.+++..
T Consensus 323 ~iGR~~lanPdl~~k~ 338 (363)
T 3l5l_A 323 SVGRAHLADPHWAYFA 338 (363)
T ss_dssp ECCHHHHHCTTHHHHH
T ss_pred EecHHHHhCchHHHHH
Confidence 9999999999888663
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=287.13 Aligned_cols=251 Identities=16% Similarity=0.105 Sum_probs=204.5
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhh--h---h--hhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK--T---E--RKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~--~---~--~~~~~~l~~~~~~~~~~~~~ 92 (306)
+|++++|++|+|||++|++.+.....++.+. +.|+|+++++++++.+... . . ....+++|.+++.|+|....
T Consensus 82 l~~~i~Gl~~~NPvglAAG~dk~~~~~~~l~-~~GfG~v~~gtvT~~pq~GNp~PR~~rl~e~~~iiN~~GfnN~G~~~~ 160 (443)
T 1tv5_A 82 ACTNIKHLDFINPFGVAAGFDKNGVCIDSIL-KLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKV 160 (443)
T ss_dssp GCEEETTEEESSSEEECTTTTTTCSSHHHHH-TTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHH
T ss_pred CCeEECCEEeCCCcEECCcccCccHHHHHHH-hcCCCEEEEeeeecCCCCCCCCccEEeccccceeeeccccCChhHHHH
Confidence 7999999999999999999987777777764 7899999999999876431 1 1 12247899999999875432
Q ss_pred eeecCC----C-------CCCceEEEecCCC-----HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHH
Q psy4398 93 VFRTCP----R-------EKNKIILQIGTAD-----PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDI 156 (306)
Q Consensus 93 ~~~~~~----~-------~~~p~ivql~g~~-----~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~ 156 (306)
.. .++ . ...|+++||+++. +++|.++++++.+++|+||||++||+++ |...+++++.
T Consensus 161 ~~-~l~~~~~~~~~~~~~~~~~vgvni~~~~~~~~~~~dy~~~a~~l~~~aD~ieiNiscPnt~------Glr~lq~~~~ 233 (443)
T 1tv5_A 161 TE-NLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGK 233 (443)
T ss_dssp HH-HHHHHHHHHHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHH
T ss_pred HH-HHHHHhhhcccccccCCceEEEEecCcccchHHHHHHHHHHHHHhcCCCEEEEeccCCCCc------ccccccCHHH
Confidence 11 111 0 1358999999987 8999999999988999999999999963 6778889999
Q ss_pred HHHHHHHHHhc--------------------------------------------------cccc-EEEEeccCCChHHH
Q psy4398 157 ACNILTTLISN--------------------------------------------------LSIP-VSCKIRVFHNEADT 185 (306)
Q Consensus 157 ~~eiv~~v~~~--------------------------------------------------~~~p-v~vKir~g~~~~~~ 185 (306)
+.+++++|+++ .++| |+||++.+++.++.
T Consensus 234 l~~il~~v~~~~~~~~~~~~~~~g~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~ed~ 313 (443)
T 1tv5_A 234 LKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQK 313 (443)
T ss_dssp HHHHHHHHHHHHHHHC--------------------------------------CCCCSSSSSCCEEEEEECSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhcccCccccccCHHHHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCHHHH
Confidence 99999999864 3578 99999987777789
Q ss_pred HHHHHHHHHcCCcEEEEcccCCC-----------CCCCCC----CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH
Q psy4398 186 IALCKRLEACGIIAIGVHGRTKA-----------ERPRHR----NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~~~~-----------~~~~~p----~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~ 248 (306)
.++|+.++++|+|+|++++++.. +.++++ ..+++++++++++ ++|||++|||.|.+|+.++++
T Consensus 314 ~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~ 393 (443)
T 1tv5_A 314 KEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIE 393 (443)
T ss_dssp HHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHH
Confidence 99999999999999999988652 122232 2478999999999 899999999999999999998
Q ss_pred hh---hhhccccCC-CCCchH-H--HHHHHHHhcCCC
Q psy4398 249 LN---CAFLRNHYP-VEKLPK-T--ILYAHCKYKRFE 278 (306)
Q Consensus 249 ~~---v~vGrall~-~p~~~~-~--~l~~~~~~~g~~ 278 (306)
.| ||+||+++. ||.+.+ + ++++||+++|++
T Consensus 394 aGAd~Vqigrall~~gP~l~~~i~~~l~~~l~~~G~~ 430 (443)
T 1tv5_A 394 AGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYY 430 (443)
T ss_dssp TTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHHTCS
T ss_pred cCCCEEEEcHHHHhcChHHHHHHHHHHHHHHHHhCCC
Confidence 85 499999765 995554 3 899999999943
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=285.33 Aligned_cols=244 Identities=14% Similarity=0.116 Sum_probs=190.8
Q ss_pred ccccccccccCCceEEccCCCCC-------CHHHHHHHHHc-CCCEEEecceechhhhhhhhhhhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVRMN-------TLPFRLLALDY-GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t-------~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (306)
.|++|++++|+|||++|||+..+ +.....+..++ |+|+++||++.+.+.........++++ ...+.. ++
T Consensus 20 ~P~~ig~~~L~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~G~GLIitE~~~v~~~g~~~~~~~gi~~-d~~i~~--~k 96 (402)
T 2hsa_B 20 SPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPTSAGFPHVPGIFT-KEQVRE--WK 96 (402)
T ss_dssp SCEEETTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHHCCTTCEEECCCEESSTTCCCSTTCCBCSS-HHHHHH--HH
T ss_pred CCeeECCEEecCCeEECCCCCCcCCCCCCCHHHHHHHHHHhccCCEEEecceeeccccccCCCCcccCC-HHHHHH--HH
Confidence 67899999999999999999654 23333333333 599999999988654332222222222 122211 45
Q ss_pred eeeecCCCCCCceEEEecC----------------------------------------CCH------------HHHHHH
Q psy4398 92 VVFRTCPREKNKIILQIGT----------------------------------------ADP------------ERALEA 119 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g----------------------------------------~~~------------~~~~~a 119 (306)
.+.+.+|+.|.++++||++ ..| ++|+++
T Consensus 97 ~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~v~~~~~~~~~~~~g~~~~~~~p~~mt~~eI~~ii~~f~~A 176 (402)
T 2hsa_B 97 KIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRS 176 (402)
T ss_dssp HHHHHHHHTTCEEEEEEECCTTSCCGGGCTTCCCCEESCSCCCCTTCEEECTTSCEEECCCCEECCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEeccCCcccccccccCCCccccCCCcccccccccccccccccCCCCCccCCHHHHHHHHHHHHHH
Confidence 5667777788999999985 112 689999
Q ss_pred HHHHhc-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccCC--------
Q psy4398 120 AKKVEH-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVFH-------- 180 (306)
Q Consensus 120 a~~~~~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~-------- 180 (306)
|+++++ |||+||||++| |..|.++|+||+++++|++++.||+++||++++ .||.||++.+.
T Consensus 177 A~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~ 256 (402)
T 2hsa_B 177 ALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDS 256 (402)
T ss_dssp HHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCS
T ss_pred HHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCC
Confidence 999874 99999999986 999999999999999999999999999999995 59999999741
Q ss_pred -ChHHHHHHHHHHHHcC------CcEEEEcccCCCCCCCCC--------CcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 181 -NEADTIALCKRLEACG------IIAIGVHGRTKAERPRHR--------NRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 181 -~~~~~~~~a~~l~~~G------~d~i~v~~~~~~~~~~~p--------~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
+.++..++++.|+++| +|+|++++++....+..| ..+++++++++.+++|||++||| +++++++
T Consensus 257 ~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i-~~~~a~~ 335 (402)
T 2hsa_B 257 NPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGY-TRELGIE 335 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSC-CHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCCC-CHHHHHH
Confidence 2356899999999999 999999987654312112 25788999999999999999999 9999999
Q ss_pred HHHh----hhhhccccCCCCCchHHH
Q psy4398 246 VFSL----NCAFLRNHYPVEKLPKTI 267 (306)
Q Consensus 246 ~l~~----~v~vGrall~~p~~~~~~ 267 (306)
+++. +|++||++++||+++++.
T Consensus 336 ~l~~g~aD~V~igR~~l~dP~l~~k~ 361 (402)
T 2hsa_B 336 AVAQGDADLVSYGRLFISNPDLVMRI 361 (402)
T ss_dssp HHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred HHHCCCCceeeecHHHHhCchHHHHH
Confidence 9987 459999999999888763
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=300.69 Aligned_cols=260 Identities=14% Similarity=0.139 Sum_probs=202.6
Q ss_pred ccccccccccCCceEEccCCC-CCCHH---------HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR-MNTLP---------FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-~t~~~---------~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
.|+++++++|+|||++|||+. .++.. |+..+ ++|+|+++||++++.+.........++++ ...+..
T Consensus 7 ~p~~ig~~~l~nRi~~apm~~~~~~~~~~~~~~~~~y~~ra-~gg~gliite~~~v~~~~~~~~~~~~~~~-~~~~~~-- 82 (671)
T 1ps9_A 7 APLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERA-RHGVALIVSGGIAPDLTGVGMEGGAMLND-ASQIPH-- 82 (671)
T ss_dssp CCEECSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHH-HTTCSEEEEEEEBSSSTTCSBTTCCBCCS-GGGHHH--
T ss_pred CCeeECCEEEcCceEECCccCCcCCCCCCcHHHHHHHHHHh-cCCCCEEEecccccCccccCCCCCCccCC-HHHHHH--
Confidence 577999999999999999996 33311 33334 67999999999987654322222222222 222221
Q ss_pred CceeeecCCCCCCceEEEecCC----------------------CH------------HHHHHHHHHHhc-CCCEEEEcc
Q psy4398 90 GSVVFRTCPREKNKIILQIGTA----------------------DP------------ERALEAAKKVEH-DVAAIDINM 134 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~----------------------~~------------~~~~~aa~~~~~-g~d~veln~ 134 (306)
++.+.+.+|+.+.++++||+|. .| ++|+++|+++++ |||+||||+
T Consensus 83 ~~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGfd~veih~ 162 (671)
T 1ps9_A 83 HRTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMG 162 (671)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEeccCCcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 4556667777899999999974 22 689999998875 999999999
Q ss_pred CC---------CccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc------CCChHHHHHHHHHHHHcCC
Q psy4398 135 GC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV------FHNEADTIALCKRLEACGI 197 (306)
Q Consensus 135 gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~------g~~~~~~~~~a~~l~~~G~ 197 (306)
+| |+.|.++|+||+++++|++++.|+++++|+++ ++|+.+|++. |++.++..++++.++++|+
T Consensus 163 ~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~ 242 (671)
T 1ps9_A 163 SEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGA 242 (671)
T ss_dssp CBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTC
T ss_pred ccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHHHHHhcCC
Confidence 86 99999999999999999999999999999999 7899999996 5677889999999999999
Q ss_pred cEEEEcccCCCCC------CCCC-CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhccccCCCCCchHH
Q psy4398 198 IAIGVHGRTKAER------PRHR-NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNHYPVEKLPKT 266 (306)
Q Consensus 198 d~i~v~~~~~~~~------~~~p-~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGrall~~p~~~~~ 266 (306)
|+|+++++..+.. +.++ ..+++++++++.+++|||++|||+|+++++++++.+ +++||++++||++++.
T Consensus 243 d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k 322 (671)
T 1ps9_A 243 TIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSK 322 (671)
T ss_dssp SEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHH
T ss_pred CEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHH
Confidence 9999986543321 1122 357899999999999999999999999999999874 5999999999988876
Q ss_pred HHHHHHHhcCCCCCcceehh
Q psy4398 267 ILYAHCKYKRFEVPKYETVQ 286 (306)
Q Consensus 267 ~l~~~~~~~g~~~~~~~~~~ 286 (306)
..+.+.++. ..|..|++
T Consensus 323 ~~~g~~~~~---~~c~~c~~ 339 (671)
T 1ps9_A 323 AQSGRADEI---NTCIGCNQ 339 (671)
T ss_dssp HHTTCGGGC---CCCCCCCT
T ss_pred HHcCCCCCc---cccccccc
Confidence 433333222 45777776
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=274.21 Aligned_cols=253 Identities=10% Similarity=0.011 Sum_probs=201.0
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh-----hhhhhcccccccccCCCCCcee-
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT-----ERKVNDLLNTIDFVDPLDGSVV- 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~- 93 (306)
+|++++|++|+|||++|||.-..+..++..+.++|+|+++|+++++++.... .+...+++|.+++.|++.....
T Consensus 4 l~~~i~g~~l~nPi~~Aag~~~~~~~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~ 83 (314)
T 2e6f_A 4 LKLNLLDHVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLK 83 (314)
T ss_dssp CCEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHH
T ss_pred cceEECCEecCCCcEECCCCCCCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHH
Confidence 6899999999999999998832356666667789999999999998764311 1112356777778777542211
Q ss_pred -eecCCC-CCCceEEEecCCCHHHHHHHHHHHhc-CCC---EEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 94 -FRTCPR-EKNKIILQIGTADPERALEAAKKVEH-DVA---AIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 94 -~~~~~~-~~~p~ivql~g~~~~~~~~aa~~~~~-g~d---~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
...... .+.|+++||.+.++++|.++++++++ |+| +||||++||+. .. +..+..+++.+.++++++++.
T Consensus 84 ~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~-~g----~~~~g~~~~~~~~ii~~vr~~ 158 (314)
T 2e6f_A 84 YASDLHDYSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV-PG----KPQVAYDFEAMRTYLQQVSLA 158 (314)
T ss_dssp HHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS-TT----CCCGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC-CC----chhhcCCHHHHHHHHHHHHHh
Confidence 111112 36799999999999999999999875 899 99999999996 22 344556888999999999999
Q ss_pred ccccEEEEeccCCChHHHHHHHHHHHHcC-CcEEEEcccCC-----C--------------CCCCC----CCcHHHHHHH
Q psy4398 168 LSIPVSCKIRVFHNEADTIALCKRLEACG-IIAIGVHGRTK-----A--------------ERPRH----RNRIEMIRTL 223 (306)
Q Consensus 168 ~~~pv~vKir~g~~~~~~~~~a~~l~~~G-~d~i~v~~~~~-----~--------------~~~~~----p~~~~~v~~i 223 (306)
+++||++|++.+++.++..++++.++++| +|+|++++++. + +.+++ |..+++++++
T Consensus 159 ~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v 238 (314)
T 2e6f_A 159 YGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAF 238 (314)
T ss_dssp HCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHH
Confidence 89999999998877788999999999999 99999988651 1 11122 2347999999
Q ss_pred HhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCchHH---HHHHHHHhcCC
Q psy4398 224 TQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLPKT---ILYAHCKYKRF 277 (306)
Q Consensus 224 ~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~~~---~l~~~~~~~g~ 277 (306)
++.+ ++|||++|||+|.+++.+++..| |++||+++. ||.+.+. ++++||.++|+
T Consensus 239 ~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~~~~g~ 300 (314)
T 2e6f_A 239 YRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKGY 300 (314)
T ss_dssp HHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 9999 99999999999999999999875 599999996 9966553 99999999993
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-36 Score=278.38 Aligned_cols=235 Identities=16% Similarity=0.150 Sum_probs=189.3
Q ss_pred ccccccccccCCceEEccCCCC--------CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVRM--------NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--------t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (306)
.|+++++++|+|||++|||+.. |+.....+.+++.+|+++||.+.+.+.........++++ ...+.. ++
T Consensus 6 ~P~~ig~~~lkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~~GLIite~~~V~~~g~~~~~~~gi~~-d~~i~~--~k 82 (362)
T 4ab4_A 6 DPIKLGDLQLPNRIIMAPLTRCRADEGRVPNALMAEYYVQRASAGLILSEATSVSPMGVGYPDTPGIWN-DEQVRG--WN 82 (362)
T ss_dssp SCEEETTEEESCSEEECCCCCCCCBTTTBCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCSTTCCBCSS-HHHHHH--HH
T ss_pred CCeeECCEEeeCccEECCccCCccCCCCCCCHHHHHHHHHHHhhCEEeeeeeEecccccCCCCCCCcCC-HHHHHH--HH
Confidence 6779999999999999999853 334455555566689999999987765433333223332 222322 66
Q ss_pred eeeecCCCCCCceEEEecCCC------------------------------------------------HHHHHHHHHHH
Q psy4398 92 VVFRTCPREKNKIILQIGTAD------------------------------------------------PERALEAAKKV 123 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~------------------------------------------------~~~~~~aa~~~ 123 (306)
.+.+.+|+.|.++++||++.+ .++|+++|+++
T Consensus 83 ~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~~a 162 (362)
T 4ab4_A 83 NVTKAVHAAGGRIFLQLWHVGRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGAENA 162 (362)
T ss_dssp HHHHHHHHTTCCEEEEEECCTTSCCGGGTTTCCCEESSCCCCSSBCSSCSSCCBCCCCEECCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEeccCcccccccccCCCcccCCCCCCCCccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 777888888999999996410 25799999998
Q ss_pred hc-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhcccc-cEEEEeccCC---------ChH
Q psy4398 124 EH-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLSI-PVSCKIRVFH---------NEA 183 (306)
Q Consensus 124 ~~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~g~---------~~~ 183 (306)
++ |||+||||++| |..|.|+|+||+++++|++++.|++++||++++. ||.||++... ..+
T Consensus 163 ~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~ 242 (362)
T 4ab4_A 163 KAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAE 242 (362)
T ss_dssp HHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHH
T ss_pred HHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHH
Confidence 75 99999999998 9999999999999999999999999999999853 9999999631 135
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhccccCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNHYP 259 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGrall~ 259 (306)
+..++++.|+++|+|+|++++++. ++ ++++++++.+++|||++||+ |+++++++++.+ |++||++++
T Consensus 243 ~~~~la~~l~~~Gvd~i~v~~~~~-----~~---~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~la 313 (362)
T 4ab4_A 243 TFTYVARELGKRGIAFICSREREA-----DD---SIGPLIKEAFGGPYIVNERF-DKASANAALASGKADAVAFGVPFIA 313 (362)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCC-----TT---CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEECCCCC-----CH---HHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence 689999999999999999998751 22 36789999999999999999 999999999874 699999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
||+|+++
T Consensus 314 nPdl~~k 320 (362)
T 4ab4_A 314 NPDLPAR 320 (362)
T ss_dssp CTTHHHH
T ss_pred CcHHHHH
Confidence 9988875
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=303.29 Aligned_cols=259 Identities=11% Similarity=0.023 Sum_probs=200.3
Q ss_pred ccccccccccCCceEEccCCCCCC--HH------HHHHHHHcCCCEEEecceechhhhhhhhhh-hcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNT--LP------FRLLALDYGADLVYSEELVDHKLVKTERKV-NDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~--~~------~r~~~~~~G~g~~~te~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 90 (306)
.|+++++++|+|||++|||+.... .+ |+..+ ++|+|+++||++++.+........ .+++ +...+.. +
T Consensus 11 ~p~~ig~~~l~NRiv~apm~~~~~~~~~~~~~~~y~~ra-~gG~Gliite~~~v~~~~~~~~~~~~~~~-~~~~~~~--~ 86 (729)
T 1o94_A 11 EPIQIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKA-EGGWAALNTEYCSINPESDDTHRLSARIW-DEGDVRN--L 86 (729)
T ss_dssp SCEEETTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHH-HTTCSEEEEEEEESSTTSCCTTSCCEECS-SHHHHHH--H
T ss_pred CCeeECCEEECCccEECCCcCCcCCCCcHHHHHHHHHHh-cCCCCEEEEcceEecCcccCCCCCCCccC-ChHHhHH--H
Confidence 678999999999999999986432 11 33333 679999999999886543222111 1222 2222211 4
Q ss_pred ceeeecCCCCCCceEEEecCC------------------------C---------------HHHHHHHHHHHhc-CCCEE
Q psy4398 91 SVVFRTCPREKNKIILQIGTA------------------------D---------------PERALEAAKKVEH-DVAAI 130 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~------------------------~---------------~~~~~~aa~~~~~-g~d~v 130 (306)
+.+.+.+|+.+.++++||+|. . .++|+++|+++++ |||+|
T Consensus 87 ~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgV 166 (729)
T 1o94_A 87 KAMTDEVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIV 166 (729)
T ss_dssp HHHHHHHHTTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHhCCCeEEEEecCCCccccccccCCCCcCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 556677788899999999882 0 3789999999974 99999
Q ss_pred EEccCC---------CccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc-------CCC-hHHHHHHHHH
Q psy4398 131 DINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV-------FHN-EADTIALCKR 191 (306)
Q Consensus 131 eln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~-------g~~-~~~~~~~a~~ 191 (306)
|||++| |..|.|+|+||+++++|++++.|++++||+++ ++||.+|++. |++ .++..++++.
T Consensus 167 Eih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~~~~~~~~~~ 246 (729)
T 1o94_A 167 YVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEM 246 (729)
T ss_dssp EEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHH
T ss_pred EEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCchHHHHHHHHH
Confidence 999998 99999999999999999999999999999999 7899999985 455 5789999999
Q ss_pred HHHcCCcEEEEcccCC--------CCCCCCC-CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccC
Q psy4398 192 LEACGIIAIGVHGRTK--------AERPRHR-NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHY 258 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~--------~~~~~~p-~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall 258 (306)
+++ |+|+++++.+.. ...+.++ .++++++++++.+++|||++|||+|+++++++++. ++++||+++
T Consensus 247 l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l 325 (729)
T 1o94_A 247 ADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSI 325 (729)
T ss_dssp HGG-GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHH
T ss_pred HHh-hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhh
Confidence 997 799999987641 1112222 26889999999999999999999999999999987 459999999
Q ss_pred CCCCchHHHHHHHHHhcCCCCCcceehh
Q psy4398 259 PVEKLPKTILYAHCKYKRFEVPKYETVQ 286 (306)
Q Consensus 259 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~ 286 (306)
+||+|+++..+...+. -.+|..|++
T Consensus 326 ~~P~~~~~~~~g~~~~---~~~ci~Cn~ 350 (729)
T 1o94_A 326 ADPFLPQKVEQGRYDD---IRVCIGCNV 350 (729)
T ss_dssp HCTTHHHHHHTTCGGG---CCCCCCCCH
T ss_pred cCchHHHHHHcCCccc---cccccccch
Confidence 9999887633222221 257888876
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=276.55 Aligned_cols=236 Identities=15% Similarity=0.130 Sum_probs=189.3
Q ss_pred ccccccccccCCceEEccCCCC--------CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVRM--------NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--------t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (306)
.|++|++++|+|||++|||+.. |+.....+.+++.+|+++||.+.+.+.........++++ ...+.. ++
T Consensus 14 ~P~~ig~~~lkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~~GLIite~~~V~~~g~~~~~~~gi~~-d~~i~~--~k 90 (361)
T 3gka_A 14 DPLTIGDLTLANRIIMAPLTRARAGDTRTPNALMARYYAERASAGLIISEATSVTPQGVGYASTPGIWS-PEQVDG--WR 90 (361)
T ss_dssp SCEEETTEEESCSEEECCCCCCCSTTTTCCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSS-HHHHHH--HH
T ss_pred CCeeECCEEecCccEECCCCCCccCCCCCCCHHHHHHHHHHHhCCEEEEcceeecccccCCCCCCccCC-HHHHHH--HH
Confidence 6779999999999999999853 334455555555589999999988765433332223322 223322 66
Q ss_pred eeeecCCCCCCceEEEecCCC------------------------------------------------HHHHHHHHHHH
Q psy4398 92 VVFRTCPREKNKIILQIGTAD------------------------------------------------PERALEAAKKV 123 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~------------------------------------------------~~~~~~aa~~~ 123 (306)
.+.+.+|+.|.++++||++.+ .++|+++|+++
T Consensus 91 ~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~g~~~~~~pr~mt~~eI~~ii~~f~~AA~~A 170 (361)
T 3gka_A 91 LVTDAVHAAGGRIFLQLWHVGRVSDPVFLDGALPVAPSAIAPGGHVSLVRPQRPYVTPRALELDEIPGVVAAFRRGAENA 170 (361)
T ss_dssp HHHHHHHHTTCCEEEEEECCTTSCCGGGTTTCCCEESSSCCCSSBCSSCSSCCBCCCCEECCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEeeccCCccccccccCCCCcccCCCCCCCCcccccccccCCCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 778888888999999996410 25799999998
Q ss_pred hc-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhcccc-cEEEEeccC-----C----ChH
Q psy4398 124 EH-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLSI-PVSCKIRVF-----H----NEA 183 (306)
Q Consensus 124 ~~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~g-----~----~~~ 183 (306)
++ |||+||||++| |..|.|+|+||+++++|++++.|++++||++++. ||.||++.. . ..+
T Consensus 171 ~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~ 250 (361)
T 3gka_A 171 RAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAA 250 (361)
T ss_dssp HHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHH
T ss_pred HHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHH
Confidence 75 99999999998 9999999999999999999999999999999853 999999962 1 135
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhccccCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNHYP 259 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGrall~ 259 (306)
+..++++.|+++|+|+|+++++.. ++ ++++++++.+++|||++||| |+++++++++.+ |++||++++
T Consensus 251 ~~~~la~~l~~~Gvd~i~v~~~~~-----~~---~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~la 321 (361)
T 3gka_A 251 TFGHVARELGRRRIAFLFARESFG-----GD---AIGQQLKAAFGGPFIVNENF-TLDSAQAALDAGQADAVAWGKLFIA 321 (361)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCS-----TT---CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCC-----CH---HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHh
Confidence 689999999999999999998751 22 46789999999999999999 999999999874 699999999
Q ss_pred CCCchHHH
Q psy4398 260 VEKLPKTI 267 (306)
Q Consensus 260 ~p~~~~~~ 267 (306)
||+|+++.
T Consensus 322 dPdl~~k~ 329 (361)
T 3gka_A 322 NPDLPRRF 329 (361)
T ss_dssp CTTHHHHH
T ss_pred CcHHHHHH
Confidence 99888663
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=299.52 Aligned_cols=265 Identities=11% Similarity=0.025 Sum_probs=203.9
Q ss_pred ccccccccccCCceEEccCCCCCCH-------HHHHHHHHcCCCEEEecceechhhhhhhhhhh-cccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTL-------PFRLLALDYGADLVYSEELVDHKLVKTERKVN-DLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~-------~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 91 (306)
.|+++++++|+|||++|||+..++. .|+...+++|+|+++||++.+.+......... +++ +..++.. ++
T Consensus 16 ~p~~ig~~~l~NRiv~apm~~~~~~~~~~~~~~~~~~~a~gG~gliite~~~v~~~~~~~~~~~~~~~-~~~~~~~--~~ 92 (690)
T 3k30_A 16 EPVQIGPFTTKNRFYQVPHCNGMGYRDPSAQASMRKIKAEGGWSAVCTEQVEIHATSDIAPFIELRIW-DDQDLPA--LK 92 (690)
T ss_dssp CCCEETTEECSSSEEECCCCCSCSSSCHHHHHHHHHHHHHTTCSEEEEEEEECSGGGCCTTSCCEECS-SGGGHHH--HH
T ss_pred CCeeECCEEECCCeEeCCCcCCCCCCChHHHHHHHHHHhccCCEEEEecceEeccccccCCCcCCccC-CHHHHHH--HH
Confidence 7889999999999999999964331 23333457899999999998876543332221 332 2233322 56
Q ss_pred eeeecCCCCCCceEEEecCCC-----------------------------------------HHHHHHHHHHHhc-CCCE
Q psy4398 92 VVFRTCPREKNKIILQIGTAD-----------------------------------------PERALEAAKKVEH-DVAA 129 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~-----------------------------------------~~~~~~aa~~~~~-g~d~ 129 (306)
.+.+.+|+.|.++++||+|.+ .++|++||+++++ |||+
T Consensus 93 ~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aGfDg 172 (690)
T 3k30_A 93 RIADAIHEGGGLAGIELAHNGMNAPNQLSRETPLGPGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDI 172 (690)
T ss_dssp HHHHHHHHTTCEEEEEEECCGGGCCCTTTCCCCEESSSCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHhcCCEEEEEccCCcccccccccCCCccCCCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 677788888999999998521 3789999999975 9999
Q ss_pred EEEccC----------CCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc------CCChHHHHHHHHH
Q psy4398 130 IDINMG----------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV------FHNEADTIALCKR 191 (306)
Q Consensus 130 veln~g----------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~------g~~~~~~~~~a~~ 191 (306)
||||++ ||..|.|+|+||+++++|++++.|++++||+++ ++||.+|++. |++.++..++++.
T Consensus 173 Veih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~~~~~ 252 (690)
T 3k30_A 173 VYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEGVLRE 252 (690)
T ss_dssp EEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHHHHHH
T ss_pred EEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHHHHHH
Confidence 999876 566899999999999999999999999999999 5688999875 4667889999999
Q ss_pred HHHcCCcEEEEcccCC-----CCCC-CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhccccCCCC
Q psy4398 192 LEACGIIAIGVHGRTK-----AERP-RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNHYPVE 261 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~-----~~~~-~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGrall~~p 261 (306)
+++ |+|++++|.++. ...+ .....+++++++++.+++|||++|||+|+++++++++.+ +++||+++.||
T Consensus 253 l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P 331 (690)
T 3k30_A 253 LGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADP 331 (690)
T ss_dssp HTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGCSSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred HHh-hcCEEEEecccccccCCCCccCCccccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCc
Confidence 998 899999987541 1112 223457899999999999999999999999999999874 69999999999
Q ss_pred CchHHHHHHHHHhcCCCCCcceehh-hccce
Q psy4398 262 KLPKTILYAHCKYKRFEVPKYETVQ-YEKLF 291 (306)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~~~~~~~-~~~~~ 291 (306)
+++++..+...++ -..|+.|++ +++.|
T Consensus 332 ~~~~~~~~g~~~~---i~~c~~c~~C~~~~~ 359 (690)
T 3k30_A 332 FLPNKIRDGRLNL---IRECIGCNICVSGDL 359 (690)
T ss_dssp THHHHHHTTCGGG---CCCCCCCCHHHHHHH
T ss_pred cHHHHHHcCCccc---cccccchhhhhhccc
Confidence 9887633222222 157777776 44333
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=264.23 Aligned_cols=251 Identities=17% Similarity=0.227 Sum_probs=192.8
Q ss_pred ccccccccccCCceEEcc-CCCCCCHHHHHHHHHcCCCEEEecceechhhhhhh-----hhhhcccccccccCCCCCce-
Q psy4398 20 ANANQANINYSNKIILAP-MVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE-----RKVNDLLNTIDFVDPLDGSV- 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAP-m~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~- 92 (306)
+|++++|++|+|||++|| |.+.+. .++......|+|+++|+.++..++.... +...++++..++.+++....
T Consensus 7 l~~~~~g~~l~npi~~aag~~~~~~-~~~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g~~~~~~~~~~ 85 (311)
T 1ep3_A 7 LSVKLPGLDLKNPIIPASGCFGFGE-EYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIM 85 (311)
T ss_dssp TCEEETTEEESSSEEECTTSSTTST-TGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHHHHH
T ss_pred cceEECCEECCCCcEECCCCCCCCH-HHHHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCcccccccCCCCcCHHHHH
Confidence 789999999999999999 665554 4554444678999999988766543211 11234566666666542221
Q ss_pred --eeecCCC-C-CCceEEEecCCCHHHHHHHHHHHh--cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh
Q psy4398 93 --VFRTCPR-E-KNKIILQIGTADPERALEAAKKVE--HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS 166 (306)
Q Consensus 93 --~~~~~~~-~-~~p~ivql~g~~~~~~~~aa~~~~--~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~ 166 (306)
..+.+++ . +.|+++||++.++++|.+++++++ .|+|+||||++||+.+.+ |..+..+++++.++++++++
T Consensus 86 ~~~~~~~~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g----~~~~g~~~~~~~eii~~v~~ 161 (311)
T 1ep3_A 86 TEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHG----GQAFGTDPEVAAALVKACKA 161 (311)
T ss_dssp HTHHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGT----TEEGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCc----hhhhcCCHHHHHHHHHHHHH
Confidence 1112222 2 679999999999999999999997 699999999999996543 34455789999999999999
Q ss_pred cccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc---------cCCC-------CCCCCCCc----HHHHHHHHhh
Q psy4398 167 NLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG---------RTKA-------ERPRHRNR----IEMIRTLTQH 226 (306)
Q Consensus 167 ~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~---------~~~~-------~~~~~p~~----~~~v~~i~~~ 226 (306)
.+++||.+|++. +..+..++++.++++|+|+|++++ ++.. +.+.++.. +++++++++.
T Consensus 162 ~~~~pv~vk~~~--~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~ 239 (311)
T 1ep3_A 162 VSKVPLYVKLSP--NVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQD 239 (311)
T ss_dssp HCSSCEEEEECS--CSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTT
T ss_pred hcCCCEEEEECC--ChHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHh
Confidence 999999999994 445678899999999999999954 2221 12334332 5889999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCchHH---HHHHHHHhcCC
Q psy4398 227 LKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPKT---ILYAHCKYKRF 277 (306)
Q Consensus 227 ~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~~---~l~~~~~~~g~ 277 (306)
+++|||++|||.|.+++.++++.| +++||+++.+|.+.+. +++.||.++|+
T Consensus 240 ~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~~~g~ 296 (311)
T 1ep3_A 240 VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQYRI 296 (311)
T ss_dssp CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHHTTC
T ss_pred cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999875 5999999999966543 99999999993
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=263.83 Aligned_cols=244 Identities=13% Similarity=0.089 Sum_probs=189.4
Q ss_pred ccccccccccCCceEEccCCC--------CCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVR--------MNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~--------~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (306)
.|++|++++|||||++|||+. +|+.....+.+++++|+++||.+.+.+.........+++ +..++.. ++
T Consensus 6 ~P~~ig~~~lkNRiv~apm~~~~a~~dg~~t~~~~~~y~~rA~gGliite~~~V~~~g~~~~~~~gi~-~d~~i~~--~k 82 (358)
T 4a3u_A 6 DPIRFGAFTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRASAGLIISEATGISQEGLGWPYAPGIW-SDAQVEA--WL 82 (358)
T ss_dssp SCEEETTEEESCSEEECCCCCCCSCTTCCCCHHHHHHHHHTTTSSSEEEEEEESSTTTCCSTTCCBCS-SHHHHHH--HH
T ss_pred CCceECCEEECCceEEcccCCCccCCCCCCCHHHHHHHHHHcCCCEEEEeeeEECccccCCCCCcccC-chHhHHH--HH
Confidence 677999999999999999984 344555666667788999999988766443333222332 2233322 56
Q ss_pred eeeecCCCCCCceEEEecCCC-----------------------------------------------HHHHHHHHHHHh
Q psy4398 92 VVFRTCPREKNKIILQIGTAD-----------------------------------------------PERALEAAKKVE 124 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~-----------------------------------------------~~~~~~aa~~~~ 124 (306)
.+.+.+|++|.++++||++.+ .++|++||++++
T Consensus 83 ~l~~avh~~G~~i~~QL~H~Gr~~~~~~~g~~~~apS~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~ 162 (358)
T 4a3u_A 83 PITQAVHDAGGLIFAQLWHMGRMVPSNVSGMQPVAPSASQAPGLGHTYDGKKPYDVARALRLDEIPRLLDDYEKAARHAL 162 (358)
T ss_dssp HHHHHHHHTTCCEEEEEECCGGGCCHHHHSSCCEESSCEECSSEEECSSSEEECCEEEECCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCceeeccccccccccccccccCCCCCcccccCCcccccCCCCCCccCccCCHHHHHHHHHHHHHHHHHHH
Confidence 778888889999999996531 257999999997
Q ss_pred c-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccC------C---ChHH
Q psy4398 125 H-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVF------H---NEAD 184 (306)
Q Consensus 125 ~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g------~---~~~~ 184 (306)
+ |||+||||.+ ||..|.|+|+||++++||.+++.||+++||++++ .++.||++.. . +.+.
T Consensus 163 ~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~ 242 (358)
T 4a3u_A 163 KAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQV 242 (358)
T ss_dssp HTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHH
T ss_pred HcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCCCcccchHHH
Confidence 5 9999999986 7999999999999999999999999999999984 4588998862 1 2344
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhccccCCC
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNHYPV 260 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGrall~~ 260 (306)
...+++.+++.|++.++++.......+.......+..++++.+..||+ +||+.|++.++++++.+ |.+||++++|
T Consensus 243 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik~~~~~~v~-~~g~~~~~~ae~~l~~G~aD~V~~gR~~lad 321 (358)
T 4a3u_A 243 FIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRKVFKPPLV-LNQDYTFETAQAALDSGVADAISFGRPFIGN 321 (358)
T ss_dssp HHHHHHHHHHHTCSEEEEECCBTTCSSSBCSSCCCHHHHHHHCCSCEE-EESSCCHHHHHHHHHHTSCSEEEESHHHHHC
T ss_pred HHHHHHhhhccCccccccccccccCcccccccHHHHHHHHHhcCCcEE-EeCCCCHHHHHHHHHcCCceEeHhhHHHHhC
Confidence 678899999999999999866544333222233567888888887776 56778999999999874 5999999999
Q ss_pred CCchHHH
Q psy4398 261 EKLPKTI 267 (306)
Q Consensus 261 p~~~~~~ 267 (306)
|+|+++.
T Consensus 322 Pdlp~k~ 328 (358)
T 4a3u_A 322 PDLPRRF 328 (358)
T ss_dssp TTHHHHH
T ss_pred hhHHHHH
Confidence 9999874
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=264.19 Aligned_cols=239 Identities=13% Similarity=0.097 Sum_probs=184.0
Q ss_pred ccccccccccCCceEEccCCCC---------C-CHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM---------N-TLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~---------t-~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
.|+++++++|+|||++|||+.. | +.....+.+++|+|+++||.+.+.+.........+++ +...+..
T Consensus 9 ~P~~ig~~~l~NRiv~apm~~~~a~~~~g~pt~~~~~~yY~~rA~~GLIite~~~v~~~g~~~~~~~gi~-~d~~i~~-- 85 (379)
T 3aty_A 9 RPLKLGRYTLRNRIIMAPLTRCQATEDDHVPRTESMLKYYEDRASAGLIIAEATMVQPNYTGFLTEPGIY-SDAQIEE-- 85 (379)
T ss_dssp SCEEETTEEESCSEEECCCCCCCBCTTTCCBCHHHHHHHHHTTTTSSEEEEEEEESSTTCCSSSSCCBSS-SHHHHHH--
T ss_pred CCeeECCEEEcCccEECCcCCCcccCCCCccCHHHHHHHHHHHhCCCeEEECceecccccccCCCCCCcC-CHHHHHH--
Confidence 6779999999999999999942 2 3344555667799999999988765433222222222 2222221
Q ss_pred CceeeecCCCCCCceEEEecC-----------------------------------------------------------
Q psy4398 90 GSVVFRTCPREKNKIILQIGT----------------------------------------------------------- 110 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g----------------------------------------------------------- 110 (306)
++.+.+.+|+.|.++++||++
T Consensus 86 ~k~~~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~g~~~~~~~~~apS~i~~~~~~~~~~~~~~g~~~~~~~pr~lt~ 165 (379)
T 3aty_A 86 WRKIVDAVHKKGGLIFLQLIHAGRAGIPEKILQQSKSDQDPLAGRLLAASAIPIKDHRIPAYFAASGEKETYGVPEELTD 165 (379)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCGGGSCHHHHTTSCCCSSSTTTTCCEESSSCCCCSCCBCTTTSTTSSCBCCCCCEECCH
T ss_pred HHHHHHHHHhcCCEEEEEeccCCcccCcccccccccCCCCCccCcccCCCCCccccccccccccccccccCCCCCccCCH
Confidence 455666666666677777642
Q ss_pred -----CCHHHHHHHHHHHh-c-CCCEEEEccCC---------Cccccc-cCCccc-cccCChHHHHHHHHHHHhccc-cc
Q psy4398 111 -----ADPERALEAAKKVE-H-DVAAIDINMGC---------PKQFSL-TGGMGA-ALLSTPDIACNILTTLISNLS-IP 171 (306)
Q Consensus 111 -----~~~~~~~~aa~~~~-~-g~d~veln~gc---------P~~~~~-~~~~G~-~l~~~~~~~~eiv~~v~~~~~-~p 171 (306)
..+++|+++|+++. + |||+||||++| |+.|.+ +|+||+ ++++|++++.|++++||++++ .|
T Consensus 166 ~eI~~~~i~~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~ 245 (379)
T 3aty_A 166 DEVRDGIIPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDR 245 (379)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCe
Confidence 11346788999887 6 99999999985 999999 999999 999999999999999999985 48
Q ss_pred EEEEeccC---------CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHH
Q psy4398 172 VSCKIRVF---------HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD 242 (306)
Q Consensus 172 v~vKir~g---------~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~ 242 (306)
|.+|++.. ++.++..++++.|+++|+|+|+++.++..... .+ .+ ++++++.+++|||++||| |+++
T Consensus 246 v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~-~~--~~-~~~ir~~~~iPvi~~G~i-t~~~ 320 (379)
T 3aty_A 246 VGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQ-IG--DV-VAWVRGSYSGVKISNLRY-DFEE 320 (379)
T ss_dssp EEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTSCC-CC--CH-HHHHHTTCCSCEEEESSC-CHHH
T ss_pred EEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCCCC-cc--HH-HHHHHHHCCCcEEEECCC-CHHH
Confidence 99999972 23467899999999999999999986532211 12 26 899999999999999999 9999
Q ss_pred HHHHHHhh----hhhccccCCCCCchHH
Q psy4398 243 YGGVFSLN----CAFLRNHYPVEKLPKT 266 (306)
Q Consensus 243 ~~~~l~~~----v~vGrall~~p~~~~~ 266 (306)
++++++.+ |++||+++.||+++++
T Consensus 321 a~~~l~~g~aD~V~igR~~l~~P~l~~k 348 (379)
T 3aty_A 321 ADQQIREGKVDAVAFGAKFIANPDLVER 348 (379)
T ss_dssp HHHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred HHHHHHcCCCeEEEecHHHHhCcHHHHH
Confidence 99999874 5999999999988865
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-32 Score=254.68 Aligned_cols=239 Identities=17% Similarity=0.175 Sum_probs=187.3
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh--h-----hhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT--E-----RKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~--~-----~~~~~~l~~~~~~~~~~~~~ 92 (306)
+|++++|++|+|||++|++.... ..++..+.++|+|+++|+++++++.... . ....+++|+.++.|++...
T Consensus 45 l~~~i~g~~l~npi~~aag~~~~-~~~~~~~a~~G~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g~~~~g~~~- 122 (336)
T 1f76_A 45 KPVNCMGLTFKNPLGLAAGLDKD-GECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDN- 122 (336)
T ss_dssp CCEEETTEEESSSEEECTTSSTT-CCCHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHH-
T ss_pred CCeEECCEEcCCCcEeCcccCCc-HHHHHHHHHcCccEEEeCCCCCCCCCCCCCcceeeccccceeeecCCCCCcCHHH-
Confidence 89999999999999999876322 2255556689999999999987653211 0 1123456777777775422
Q ss_pred eeecCC--CCCCceEEEecCCC-------HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 93 VFRTCP--REKNKIILQIGTAD-------PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 93 ~~~~~~--~~~~p~ivql~g~~-------~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
+.+.++ ..+.|+++||+++. +++|.++++++.+|+|+||||++||+++ |...+++++++.+++++
T Consensus 123 ~~~~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~d~iein~~sP~~~------g~~~~~~~~~~~~il~~ 196 (336)
T 1f76_A 123 LVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTP------GLRTLQYGEALDDLLTA 196 (336)
T ss_dssp HHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSST------TGGGGGSHHHHHHHHHH
T ss_pred HHHHHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhccCCEEEEEccCCCCC------CcccccCHHHHHHHHHH
Confidence 222221 13469999999887 8999999999888999999999999964 34456789999999999
Q ss_pred HHhcc---------cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------CCCCCC----CcH
Q psy4398 164 LISNL---------SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------ERPRHR----NRI 217 (306)
Q Consensus 164 v~~~~---------~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~~~~~p----~~~ 217 (306)
+++.+ ++||+||++.+++.++..++|+.++++|+|+|++++++.. +.++++ ..+
T Consensus 197 vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~ 276 (336)
T 1f76_A 197 IKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKST 276 (336)
T ss_dssp HHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHH
T ss_pred HHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHH
Confidence 99988 7999999998878788999999999999999999976421 112232 246
Q ss_pred HHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCchHH
Q psy4398 218 EMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLPKT 266 (306)
Q Consensus 218 ~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~~~ 266 (306)
++++++++.+ ++|||++|||+|.+++.++++.| |++||+++. ||.+.+.
T Consensus 277 ~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~~~P~~~~~ 331 (336)
T 1f76_A 277 EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKE 331 (336)
T ss_dssp HHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHhcCcHHHHH
Confidence 8889999999 89999999999999999999875 499999987 8966654
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-33 Score=261.66 Aligned_cols=244 Identities=13% Similarity=0.089 Sum_probs=186.1
Q ss_pred ccccccccccCCceEEccCCCC--------CCHHHHHHHHH--cCCCEEEecceechhhhhhhhh-hhcccccccccCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM--------NTLPFRLLALD--YGADLVYSEELVDHKLVKTERK-VNDLLNTIDFVDPL 88 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--------t~~~~r~~~~~--~G~g~~~te~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 88 (306)
.|+++++++|+|||++|||+.. |+.....+..+ +|+|+++||.+.+.+....... ..+++ +...+..
T Consensus 16 ~P~~ig~~~LkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~gG~GLIIte~~~V~~~g~~~~~~~~gi~-~d~~i~~- 93 (407)
T 3tjl_A 16 QSIKVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGYEGAAPGIW-TDKHAKA- 93 (407)
T ss_dssp SCEEETTEEESCSEEBCCCCCCBSCTTSCCBHHHHHHHHHTCCSTTCEEEEEEEESSGGGCCCSSBCCBCS-SHHHHHH-
T ss_pred CCeeECCEEecCCcEECCCCCCccCCCCCCCHHHHHHHHHHHcCCceEEEEcceEECCccCCCCCcCcccC-CHHHHHH-
Confidence 7889999999999999999942 33444555444 5799999999987765433332 22332 2222322
Q ss_pred CCceeeecCCCCCCceEEEecCCC-------------------------------------------------HHH-HHH
Q psy4398 89 DGSVVFRTCPREKNKIILQIGTAD-------------------------------------------------PER-ALE 118 (306)
Q Consensus 89 ~~~~~~~~~~~~~~p~ivql~g~~-------------------------------------------------~~~-~~~ 118 (306)
++.+.+.+|+.|.++++||++.+ .++ |++
T Consensus 94 -~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~pr~lt~~eI~~ii~~~~~~ 172 (407)
T 3tjl_A 94 -WKVITDKVHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATYESDAAKEAAEAVGNPVRALTTQEVKDLVYEAYTN 172 (407)
T ss_dssp -HHHHHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCCEESSSCCSSHHHHHHHHHTTCCCEECCHHHHHHHHHTHHHH
T ss_pred -HHHHHHHHHhcCCEEEEEeccCCCccchhhcccCCCcccCCCCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHH
Confidence 66788888888999999997521 145 999
Q ss_pred HHHHHhc-CCCEEEEccCC---------CccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccCC-------
Q psy4398 119 AAKKVEH-DVAAIDINMGC---------PKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVFH------- 180 (306)
Q Consensus 119 aa~~~~~-g~d~veln~gc---------P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~------- 180 (306)
||+++++ |||+||||++| |..|.|+|+||+++++|++++.||+++|+++++ .||.+|++...
T Consensus 173 aa~~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~ 252 (407)
T 3tjl_A 173 AAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKA 252 (407)
T ss_dssp HHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCG
T ss_pred HHHHHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECcccccCCCcc
Confidence 9998875 99999999999 999999999999999999999999999999985 48999999611
Q ss_pred --C----hHHHHHHHHHH---HHcC--CcEEEEc-ccCCCCCCCCC-CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q psy4398 181 --N----EADTIALCKRL---EACG--IIAIGVH-GRTKAERPRHR-NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247 (306)
Q Consensus 181 --~----~~~~~~~a~~l---~~~G--~d~i~v~-~~~~~~~~~~p-~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l 247 (306)
+ .++..++++.| ++.| +|+|+++ ++........+ ..++.+..+++.+++|||++|||.+.+++.+++
T Consensus 253 ~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~~~~~~~~~~~ir~~~~~PvI~~Ggi~~~~dA~~~i 332 (407)
T 3tjl_A 253 HKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVILKAGNYSYDAPEFKTL 332 (407)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEECCGGGCCCCSHHHHHHCCSEEEEESCGGGGTTTTHHH
T ss_pred cccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcCCccchhHHHHHHHHHhCCCEEecCCCCCHHHHHHHH
Confidence 2 34578999999 8889 9999998 44332212121 123456778888899999999999888776666
Q ss_pred Hh-------hhhhccccCCCCCchHH
Q psy4398 248 SL-------NCAFLRNHYPVEKLPKT 266 (306)
Q Consensus 248 ~~-------~v~vGrall~~p~~~~~ 266 (306)
+. +|++||+++.||+++++
T Consensus 333 ~~~~~g~aDlVa~GR~~iaNPdL~~r 358 (407)
T 3tjl_A 333 KEDIADKRTLVGFSRYFTSNPNLVWK 358 (407)
T ss_dssp HHHHTTSSEEEECSHHHHHCTTHHHH
T ss_pred HhhccCCCeEEEeChhhhhCchHHHH
Confidence 54 36999999999988865
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=246.60 Aligned_cols=255 Identities=13% Similarity=0.037 Sum_probs=186.4
Q ss_pred cc-ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhh-----hhhhhhcccccccccCCCCCc
Q psy4398 18 DM-ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK-----TERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 18 ~~-~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~ 91 (306)
++ |++++.|++|+|||++|+++-..+..+.......|+|+++++++++++... -.+.+.+++|.+++.|+|...
T Consensus 34 ~~~L~v~~~Gl~f~NPvglAaG~~~~~~e~~~~l~~~G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~G~~n~G~~~ 113 (354)
T 3tjx_A 34 SMSLQVNLLNNTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDF 113 (354)
T ss_dssp CCCCCEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHH
T ss_pred CCceeEEECCEEcCCCcEEccCCCCCCHHHHHHHHHcCCCEEEeCCcCcccccCCCCCeEEEcccccccccccCCHHHHH
Confidence 44 899999999999999999853344544444447899999999998775431 122346789999999997643
Q ss_pred eeee---cCCCCCCceEEEecCCCHHHHHHHHHHHh----cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHH
Q psy4398 92 VVFR---TCPREKNKIILQIGTADPERALEAAKKVE----HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTL 164 (306)
Q Consensus 92 ~~~~---~~~~~~~p~ivql~g~~~~~~~~aa~~~~----~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v 164 (306)
.+.+ .......|+++||++.+++++.+.++.+. .++|+||||++||+.. .+..+..+++.+.++++++
T Consensus 114 ~~~~~~~~~~~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~-----g~~~l~~~~~~~~~i~~~v 188 (354)
T 3tjx_A 114 YLAYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP-----GKPQVAYDFDAMRQCLTAV 188 (354)
T ss_dssp HHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC--------------CTTSHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCc-----chhhhccCHHHHHHHHHHH
Confidence 3222 22334679999999999999888877653 3799999999999952 2556778999999999999
Q ss_pred HhcccccEEEEeccCCChHHHHHHHHHHHHcC-CcEEEEcc----------cC---------CCCCCCCCCc----HHHH
Q psy4398 165 ISNLSIPVSCKIRVFHNEADTIALCKRLEACG-IIAIGVHG----------RT---------KAERPRHRNR----IEMI 220 (306)
Q Consensus 165 ~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G-~d~i~v~~----------~~---------~~~~~~~p~~----~~~v 220 (306)
++.+..|+.+|++.+++.......+..+.+.+ ++.++... ++ ..+.+++++. ++++
T Consensus 189 ~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v 268 (354)
T 3tjx_A 189 SEVYPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANI 268 (354)
T ss_dssp HHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHH
T ss_pred HHHhhcccccccCCCCCchhHHHHHHHHHhhcccchhheecccccccccccccccccccCcccccccCchhhHHHHHHHH
Confidence 99999999999997766666666777776654 44444211 11 1123455443 5667
Q ss_pred HHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhcccc-CCCCC-chHH--HHHHHHHhcCC
Q psy4398 221 RTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNH-YPVEK-LPKT--ILYAHCKYKRF 277 (306)
Q Consensus 221 ~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGral-l~~p~-~~~~--~l~~~~~~~g~ 277 (306)
+++++.+ ++|||++|||.|.+|+.+.+.+| ||+||++ |.+|. +.++ +|++||+++||
T Consensus 269 ~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~~L~~~L~~~G~ 333 (354)
T 3tjx_A 269 NAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRY 333 (354)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHHHHHHHHHHcCC
Confidence 8888877 79999999999999999999886 4999996 68994 4444 99999999993
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-31 Score=248.34 Aligned_cols=245 Identities=11% Similarity=0.090 Sum_probs=175.8
Q ss_pred ccccccccccCCceEEccCCCC--------C--CHHHHHHHH--HcCCCEEEecceechhhhhhhhhhhcccccccccCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM--------N--TLPFRLLAL--DYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--------t--~~~~r~~~~--~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (306)
.|++|++++|+|||++|||+.. + +.+...+.+ ++|+|+++||.+.+.+.........+++ +...+..
T Consensus 19 ~P~~ig~l~lkNRiv~aPm~~~~a~~~g~v~~~d~~~~yy~~rA~GG~GLIite~~~V~~~g~~~~~~~gi~-~d~~i~~ 97 (400)
T 4gbu_A 19 KPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVW-SEEQMVE 97 (400)
T ss_dssp SCEEETTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEECSCEESSGGGCCCTTSCBSS-SHHHHHH
T ss_pred CCeeECCEEEcCcCEeCCccCCcCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEcCeEECccccCCCCCCccC-CHHHHHH
Confidence 7889999999999999999842 2 233444433 4689999999998776543333322332 2223322
Q ss_pred CCCceeeecCCCCCCceEEEecCCC--------------------------------------------------HHHHH
Q psy4398 88 LDGSVVFRTCPREKNKIILQIGTAD--------------------------------------------------PERAL 117 (306)
Q Consensus 88 ~~~~~~~~~~~~~~~p~ivql~g~~--------------------------------------------------~~~~~ 117 (306)
++.+.+.+|++|.++++||++.+ .++|+
T Consensus 98 --~k~l~davH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~F~ 175 (400)
T 4gbu_A 98 --WTKIFNAIHEKKSFVWVQLAVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYV 175 (400)
T ss_dssp --HHHHHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCCEESCSSCCSCHHHHHHHHHTTCCCEECCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCceEEeeeecCcccCccccccCCCcccCccccccCCCCcccccccCCCCCccCCHHHHHHHHHHHH
Confidence 66788888889999999997531 15799
Q ss_pred HHHHHHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccC------C
Q psy4398 118 EAAKKVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVF------H 180 (306)
Q Consensus 118 ~aa~~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g------~ 180 (306)
+||+++++ |||+||||.+ +|..|.|+|.||++++||.+++.||+++||+++ ..||.+|++.. .
T Consensus 176 ~AA~rA~~AGFDgVEIH~AhGYLl~QFLSp~tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~~~~~ 255 (400)
T 4gbu_A 176 QAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 255 (400)
T ss_dssp HHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCC
T ss_pred HHHHHHHhcCcCeeeecccccchHHheecCcCCCCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEeccccccCCCC
Confidence 99999975 9999999976 799999999999999999999999999999998 35899999851 1
Q ss_pred C------hHHHHHHHHHHHHcC-----CcEEEEcccCCCCCC----CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 181 N------EADTIALCKRLEACG-----IIAIGVHGRTKAERP----RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 181 ~------~~~~~~~a~~l~~~G-----~d~i~v~~~~~~~~~----~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
+ .++..++++.++..+ .+.+++......... .+.........+++.+++|||++||+.+..++.+
T Consensus 256 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~~~~~~~~~~ 335 (400)
T 4gbu_A 256 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVR 335 (400)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTTTTCCCSCCSTHHHHHCCSCEEEESSCTTCHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHhhccCccccceeeecccCCCcccccccchhhhHHHHHHHHHhCCCEEEeCCCCChHHHHH
Confidence 1 234566677776543 456665432211111 0011112335578888999999999987666655
Q ss_pred HHHh----hhhhccccCCCCCchHHH
Q psy4398 246 VFSL----NCAFLRNHYPVEKLPKTI 267 (306)
Q Consensus 246 ~l~~----~v~vGrall~~p~~~~~~ 267 (306)
.+.. +|.+||++++||+|+++.
T Consensus 336 ~~~~~~aDlV~~gR~~iadPdl~~k~ 361 (400)
T 4gbu_A 336 EEVKDKRTLIGYGRFFISNPDLVDRL 361 (400)
T ss_dssp HHTTSTTEEEECCHHHHHCTTHHHHH
T ss_pred HHHcCCCeEhHHHHHHHHCcHHHHHH
Confidence 5533 569999999999999873
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-30 Score=269.74 Aligned_cols=262 Identities=18% Similarity=0.202 Sum_probs=198.9
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhh--hh-hhhh-------------hccccccc
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLV--KT-ERKV-------------NDLLNTID 83 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~--~~-~~~~-------------~~~l~~~~ 83 (306)
+++++.|++|+|||++|||+..++.+++..+...|.|++++++++..+.. .. .+.. ..++++..
T Consensus 533 ls~~~~G~~~~nPv~lAa~~~~~~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~~~~~~~~~~n~e~ 612 (1025)
T 1gte_A 533 ISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIEL 612 (1025)
T ss_dssp CCEEETTEEESSSEEECSSGGGSSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCC
T ss_pred ceeeeccccccCcccccCCCCCCCHHHHHHHHHCCcCeEEeceecccccccCCCCccEEeccccccccCCchhheeeecc
Confidence 89999999999999999999888888888777889999999988865422 10 0100 01333333
Q ss_pred ccCCCCCcee--eecCC--CCCCceEEEe-cCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHH
Q psy4398 84 FVDPLDGSVV--FRTCP--REKNKIILQI-GTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157 (306)
Q Consensus 84 ~~~~~~~~~~--~~~~~--~~~~p~ivql-~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~ 157 (306)
+.+.+..... ...+. ..+.|+++|+ .+.++++|.+++++++ .|+|+||||++||+. ...+++|++++++++.+
T Consensus 613 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~~~G~~~~~~~~~~ 691 (1025)
T 1gte_A 613 ISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGERGMGLACGQDPELV 691 (1025)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC-----SBGGGCHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCcccccccCHHHH
Confidence 3333211100 01111 1246899988 5789999999999986 599999999999997 56688999999999999
Q ss_pred HHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc----------------------ccCCCCCCCCCC
Q psy4398 158 CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH----------------------GRTKAERPRHRN 215 (306)
Q Consensus 158 ~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~----------------------~~~~~~~~~~p~ 215 (306)
.++++++++.+++||+||++ ++.+++.++++.++++|+|+|+++ +++..+.++++.
T Consensus 692 ~~iv~~v~~~~~~Pv~vK~~--~~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~ 769 (1025)
T 1gte_A 692 RNICRWVRQAVQIPFFAKLT--PNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTA 769 (1025)
T ss_dssp HHHHHHHHHHCSSCEEEEEC--SCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGG
T ss_pred HHHHHHHHHhhCCceEEEeC--CChHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCccc
Confidence 99999999999999999999 566678999999999999999993 333334455554
Q ss_pred c----HHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhccccCC-CCCchH-H--HHHHHHHhcCCC-CCcc
Q psy4398 216 R----IEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP-VEKLPK-T--ILYAHCKYKRFE-VPKY 282 (306)
Q Consensus 216 ~----~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~-~p~~~~-~--~l~~~~~~~g~~-~~~~ 282 (306)
. +++++++++.+ ++|||++|||.|.+|+.+++..| +++||+++. +|.+.+ + +|+.+|..+|++ +..+
T Consensus 770 ~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~~l~~~l~~~G~~~i~~l 849 (1025)
T 1gte_A 770 IRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGW 849 (1025)
T ss_dssp GHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHTTCGGGTTS
T ss_pred chhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEEEEeeccccCCccHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 4 47899999999 99999999999999999999875 499999987 665544 3 999999999975 4444
Q ss_pred ee
Q psy4398 283 ET 284 (306)
Q Consensus 283 ~~ 284 (306)
.+
T Consensus 850 ~g 851 (1025)
T 1gte_A 850 DG 851 (1025)
T ss_dssp BT
T ss_pred hC
Confidence 43
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-23 Score=191.20 Aligned_cols=229 Identities=16% Similarity=0.175 Sum_probs=160.3
Q ss_pred ccccccccccCCceEEccCCCCC-------CHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMN-------TLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t-------~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
+++++.|.+++|||++|||.+.+ +.+++..+.+.|+++.++++.+. +... ... ..+.
T Consensus 45 ~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~--l~~~-~~~-~~~~------------ 108 (349)
T 1p0k_A 45 ISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA--LKDP-SER-LSYE------------ 108 (349)
T ss_dssp CCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT--TTCH-HHH-HHHH------------
T ss_pred ceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc--ccCc-ccc-ccee------------
Confidence 78999999999999999999888 56788888899999888876543 1110 000 0000
Q ss_pred eeecCCCCCCceEEEec-CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHH--HHHHHHHHHhccc
Q psy4398 93 VFRTCPREKNKIILQIG-TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDI--ACNILTTLISNLS 169 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~--~~eiv~~v~~~~~ 169 (306)
+.+.. ..+.|+++|+. +.+++.+.++++. .|+|+|+||++||+..... . .++++ +.++++++++.++
T Consensus 109 ~~~~~-~~~~pv~~~i~~~~~~~~~~~~~~~--~gad~i~i~~~~~~~~~~~--~-----~~~~~~~~~~~i~~vr~~~~ 178 (349)
T 1p0k_A 109 IVRKE-NPNGLIFANLGSEATAAQAKEAVEM--IGANALQIHLNVIQEIVMP--E-----GDRSFSGALKRIEQICSRVS 178 (349)
T ss_dssp HHHHH-CSSSCEEEEEETTCCHHHHHHHHHH--TTCSEEEEEECTTTTC---------------CTTHHHHHHHHHHHCS
T ss_pred hhhhh-CCCceeEEeecCCCCHHHHHHHHHh--cCCCeEEecccchhhhcCC--C-----CCcchHHHHHHHHHHHHHcC
Confidence 00000 13579999998 7788776643222 4899999999999853221 1 13333 6789999999899
Q ss_pred ccEEEEec-cCCChHHHHHHHHHHHHcCCcEEEE--cccC--------CCC------CCCCCCcHHHHHHHHhhC-CCcE
Q psy4398 170 IPVSCKIR-VFHNEADTIALCKRLEACGIIAIGV--HGRT--------KAE------RPRHRNRIEMIRTLTQHL-KIPV 231 (306)
Q Consensus 170 ~pv~vKir-~g~~~~~~~~~a~~l~~~G~d~i~v--~~~~--------~~~------~~~~p~~~~~v~~i~~~~-~ipv 231 (306)
+||.+|+. .+.+ .+.++.+.++|+|+|++ |+++ +.. ...++..++.+.++++.+ ++||
T Consensus 179 ~Pv~vK~~~~~~~----~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipv 254 (349)
T 1p0k_A 179 VPVIVKEVGFGMS----KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTM 254 (349)
T ss_dssp SCEEEEEESSCCC----HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEE
T ss_pred CCEEEEecCCCCC----HHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeE
Confidence 99999984 3344 46688899999999999 4443 111 233456788899999987 8999
Q ss_pred EEecCCCCHHHHHHHHHhh---hhhccccCCC-----C-C---ch-HH--HHHHHHHhcCCC
Q psy4398 232 IANGGSKEIVDYGGVFSLN---CAFLRNHYPV-----E-K---LP-KT--ILYAHCKYKRFE 278 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~---v~vGrall~~-----p-~---~~-~~--~l~~~~~~~g~~ 278 (306)
|++|||.+.+|+.+++..| |++||+++.. + . .. .+ +|+.+|...|+.
T Consensus 255 ia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~~~~g~~~~~~~~~~~~~~l~~~m~~~G~~ 316 (349)
T 1p0k_A 255 IASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGAR 316 (349)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999875 4999998764 2 1 11 11 889999999954
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=188.89 Aligned_cols=228 Identities=11% Similarity=0.079 Sum_probs=172.6
Q ss_pred ccccccccccCCceEEccCC--CCCC----HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMV--RMNT----LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~--~~t~----~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++.|.++++||++|||. +.++ .+++..+++.|++++++++.+ ..+.. ...
T Consensus 70 ~st~i~G~~l~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s-~~le~-v~~------------------- 128 (368)
T 2nli_A 70 TSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG-ATFEE-ISE------------------- 128 (368)
T ss_dssp CCEEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCS-SCHHH-HHH-------------------
T ss_pred cceEECCEecCCceeecchhhccCCCcHHHHHHHHHHHHcCCCEEeechHh-HHHHH-HHH-------------------
Confidence 88999999999999999998 6654 578888999999999999875 11110 000
Q ss_pred eecCCCCCCceEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCcc------------------ccc----cCCcccc
Q psy4398 94 FRTCPREKNKIILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQ------------------FSL----TGGMGAA 149 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~------------------~~~----~~~~G~~ 149 (306)
.. .+.|+.+||.+ .+++...++++++++ |+++++||++||.. +.. ....|+.
T Consensus 129 --~~--~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~ 204 (368)
T 2nli_A 129 --GL--NGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMS 204 (368)
T ss_dssp --HH--TTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-
T ss_pred --hC--CCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCch
Confidence 00 13589999987 788888888998875 99999999999972 110 0234555
Q ss_pred c---c--CChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHH
Q psy4398 150 L---L--STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLT 224 (306)
Q Consensus 150 l---~--~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~ 224 (306)
+ + .++++..+.++++++.++.||++|.- . ..+.++.++++|+|+|++++....+...++..++.+.+++
T Consensus 205 l~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v--~----~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~ 278 (368)
T 2nli_A 205 LNNIYGASKQKISPRDIEEIAGHSGLPVFVKGI--Q----HPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIA 278 (368)
T ss_dssp ----CTTBCSBCCHHHHHHHHHHSSSCEEEEEE--C----SHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHH
T ss_pred HHhhhhccCchhhHHHHHHHHHHcCCCEEEEcC--C----CHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHH
Confidence 4 2 36777788899999999999999954 2 3567889999999999996543333455677899999999
Q ss_pred hhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCC----------CchH--HHHHHHHHhcCCC
Q psy4398 225 QHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVE----------KLPK--TILYAHCKYKRFE 278 (306)
Q Consensus 225 ~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p----------~~~~--~~l~~~~~~~g~~ 278 (306)
+.+ ++|||++|||++.+|+.+++..|+ ++||+++... .+.. .+|+.+|...|..
T Consensus 279 ~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~ 349 (368)
T 2nli_A 279 ERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQ 349 (368)
T ss_dssp HHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 988 699999999999999999998754 9999887542 1111 1888899999953
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=181.43 Aligned_cols=234 Identities=15% Similarity=0.098 Sum_probs=170.9
Q ss_pred ccccccccccCCceEEccCCCCCCHH-------HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLP-------FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~-------~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
+++++.|.++++||++||| ++++.. ++..+++.|+.++++++.+.. + ..
T Consensus 61 ~~t~i~G~~~~~Pi~iAPm-g~~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~-i----ee------------------ 116 (370)
T 1gox_A 61 MTTTILGFKISMPIMIAPT-AMQKMAHPEGEYATARAASAAGTIMTLSSWATSS-V----EE------------------ 116 (370)
T ss_dssp CCEEETTEEESSSEEECCC-SCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSC-H----HH------------------
T ss_pred CceEECCcccCCceeEccc-chhhhccchHHHHHHHHHHHcCCCeeccCCCCCC-H----HH------------------
Confidence 8899999999999999999 677654 888889999999999876421 1 00
Q ss_pred eeecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCcc--------------------cccc-------
Q psy4398 93 VFRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQ--------------------FSLT------- 143 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~--------------------~~~~------- 143 (306)
+... .+.|..+||. +.+++...+.++++++ |++.|+||+.||.. +...
T Consensus 117 v~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 193 (370)
T 1gox_A 117 VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMD 193 (370)
T ss_dssp HHTT---CCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---
T ss_pred HHhh---cCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccc
Confidence 0001 1257899995 7888888888888875 99999999999864 1111
Q ss_pred CCccccc------cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcH
Q psy4398 144 GGMGAAL------LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI 217 (306)
Q Consensus 144 ~~~G~~l------~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~ 217 (306)
...|+.+ +.++.+..+.++++++.+++|+.+|.. .+ .+.++.+.++|+|+|++++....+...++..+
T Consensus 194 ~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~--~~----~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~ 267 (370)
T 1gox_A 194 KANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGV--IT----AEDARLAVQHGAAGIIVSNHGARQLDYVPATI 267 (370)
T ss_dssp ------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECC--CS----HHHHHHHHHTTCSEEEECCGGGTSSTTCCCHH
T ss_pred cccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEEEec--CC----HHHHHHHHHcCCCEEEECCCCCccCCCcccHH
Confidence 1123333 335555567799999999999999998 33 35678889999999999442111223345689
Q ss_pred HHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC---------Cch-H--HHHHHHHHhcCCC-C
Q psy4398 218 EMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE---------KLP-K--TILYAHCKYKRFE-V 279 (306)
Q Consensus 218 ~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p---------~~~-~--~~l~~~~~~~g~~-~ 279 (306)
+.+.++++.+ ++|||++|||++.+|+.+++..| |++||+++.+. ... . .+|+.+|...|+. +
T Consensus 268 ~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~~~~~G~~gv~~~~~~l~~el~~~m~~~G~~~i 347 (370)
T 1gox_A 268 MALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSL 347 (370)
T ss_dssp HHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBT
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 9999999998 79999999999999999999875 49999987532 111 1 1899999999975 4
Q ss_pred Ccceehh
Q psy4398 280 PKYETVQ 286 (306)
Q Consensus 280 ~~~~~~~ 286 (306)
.++....
T Consensus 348 ~el~~~~ 354 (370)
T 1gox_A 348 KEISRSH 354 (370)
T ss_dssp TTCCGGG
T ss_pred HHhhhcc
Confidence 4444433
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-21 Score=181.04 Aligned_cols=227 Identities=14% Similarity=0.086 Sum_probs=168.2
Q ss_pred ccccccccccCCceEEccCCCCCCHH-------HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLP-------FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~-------~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
+++++.|.++++||++||| +.++.. ++..|++.|+.++++++.+. .+.. ..
T Consensus 84 ~st~i~G~~l~~Pi~iAPm-g~~~l~~~~~e~~laraA~~~G~~~~~s~~~s~-~le~-v~------------------- 141 (392)
T 2nzl_A 84 LSTSVLGQRVSMPICVGAT-AMQRMAHVDGELATVRACQSLGTGMMLSSWATS-SIEE-VA------------------- 141 (392)
T ss_dssp CCEEETTEEESSSEEECCC-SCGGGTSTTHHHHHHHHHHHHTCEEEECTTCSS-CHHH-HH-------------------
T ss_pred cceEECCEecCCceEeccc-cccccccchHHHHHHHHHHHcCCCeeccchHHH-HHHH-HH-------------------
Confidence 8899999999999999999 555443 88888899999999987641 1110 00
Q ss_pred eeecCCCCCCceEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCcc---------------cc-----c------cC
Q psy4398 93 VFRTCPREKNKIILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQ---------------FS-----L------TG 144 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~---------------~~-----~------~~ 144 (306)
... .+.|+.+||.. .+++...+.++++++ |++++.||++||.. .. . ..
T Consensus 142 --~~~--~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p 217 (392)
T 2nzl_A 142 --EAG--PEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSP 217 (392)
T ss_dssp --HHC--TTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC---------
T ss_pred --Hhc--CCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCc
Confidence 000 23589999976 788888888888875 99999999999974 11 0 00
Q ss_pred ----Cccc---cccC---ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q psy4398 145 ----GMGA---ALLS---TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR 214 (306)
Q Consensus 145 ----~~G~---~l~~---~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p 214 (306)
+.|+ .++. ++++..+.++++++.++.||.+|.- .+ .+.|+.++++|+|+|++++....+...++
T Consensus 218 ~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv--~~----~e~A~~a~~aGad~I~vs~~ggr~~~~g~ 291 (392)
T 2nzl_A 218 EENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGI--LR----GDDAREAVKHGLNGILVSNHGARQLDGVP 291 (392)
T ss_dssp --------CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEE--CC----HHHHHHHHHTTCCEEEECCGGGTSSTTCC
T ss_pred cccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEec--CC----HHHHHHHHHcCCCEEEeCCCCCCcCCCCc
Confidence 1122 1222 6767778899999999999999954 23 56688999999999999664433345567
Q ss_pred CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCC---------ch-H--HHHHHHHHhcCC
Q psy4398 215 NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK---------LP-K--TILYAHCKYKRF 277 (306)
Q Consensus 215 ~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~---------~~-~--~~l~~~~~~~g~ 277 (306)
..++.+.++++++ ++|||++|||++.+|+.+++..| |++||+++.... .. . .+|+.+|...|.
T Consensus 292 ~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~~~~g~~gv~~~l~~l~~el~~~m~~~G~ 371 (392)
T 2nzl_A 292 ATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGC 371 (392)
T ss_dssp CHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899999999988 59999999999999999999875 499999876421 11 1 289999999996
Q ss_pred C
Q psy4398 278 E 278 (306)
Q Consensus 278 ~ 278 (306)
.
T Consensus 372 ~ 372 (392)
T 2nzl_A 372 Q 372 (392)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.6e-21 Score=175.83 Aligned_cols=228 Identities=14% Similarity=0.079 Sum_probs=155.7
Q ss_pred ccccccccccCCceEEccCCCCCCH------HHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTL------PFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~------~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++.|.++++|+++|||.+.++. +++..+++.|++++++++.+. +..... ...+ ++.
T Consensus 48 ~~~~i~g~~l~~P~~iapm~g~~~~~~~~~~~la~~a~~~G~~~~~~~~~~~--le~~~~--~~~~---ql~-------- 112 (332)
T 1vcf_A 48 LTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRIL--LERPEA--LRSF---RVR-------- 112 (332)
T ss_dssp CCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHH--HHCTTT--HHHH---CCT--------
T ss_pred cceEECCcccCCceEEeccccCCcchhHHHHHHHHHHHHcCCCEEeCCchhc--ccCCCc--cceE---Eee--------
Confidence 7889999999999999999987653 677888899999999998763 211000 0000 000
Q ss_pred eecCCCCCCceEEE-----ecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 94 FRTCPREKNKIILQ-----IGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 94 ~~~~~~~~~p~ivq-----l~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
....+.|++.+ +.+.+++.+.++++.+ +++++++|+.+...... + | . .+.+.+.++++++++ +
T Consensus 113 ---~~~~d~pv~~~~~~~q~~~~~~~~~~~a~~~~--~~~a~~i~~n~~~~~~~-~--~-~--~~~~~~~~~i~~vr~-~ 180 (332)
T 1vcf_A 113 ---KVAPKALLIANLGLAQLRRYGRDDLLRLVEML--EADALAFHVNPLQEAVQ-R--G-D--TDFRGLVERLAELLP-L 180 (332)
T ss_dssp ---TTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHH--TCSEEEEECCHHHHHHT-T--S-C--CCCTTHHHHHHHHCS-C
T ss_pred ---ccCCCceeecccChhhhhccChHHHHHHHhhc--CCCceeeccchHHHHhc-C--C-C--ccHHHHHHHHHHHHc-C
Confidence 01124677744 4566777777776644 67888887754322111 0 1 1 111236788999999 9
Q ss_pred cccEEEE-eccCCChHHHHHHHHHHHHcCCcEEEEc--ccC--------CCC--------CCCCCCcHHHHHHHHhhC-C
Q psy4398 169 SIPVSCK-IRVFHNEADTIALCKRLEACGIIAIGVH--GRT--------KAE--------RPRHRNRIEMIRTLTQHL-K 228 (306)
Q Consensus 169 ~~pv~vK-ir~g~~~~~~~~~a~~l~~~G~d~i~v~--~~~--------~~~--------~~~~p~~~~~v~~i~~~~-~ 228 (306)
++||++| ++.|++ .+.++.++++|+|+|+++ +++ +.. ...++..++.+.++++.+ +
T Consensus 181 ~~Pv~vK~v~~g~~----~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ 256 (332)
T 1vcf_A 181 PFPVMVKEVGHGLS----REAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPH 256 (332)
T ss_dssp SSCEEEECSSSCCC----HHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSS
T ss_pred CCCEEEEecCCCCC----HHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCC
Confidence 9999999 654444 345788999999999994 442 211 234456788999999999 8
Q ss_pred CcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC--------CchH---HHHHHHHHhcCCC
Q psy4398 229 IPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE--------KLPK---TILYAHCKYKRFE 278 (306)
Q Consensus 229 ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p--------~~~~---~~l~~~~~~~g~~ 278 (306)
+|||++|||++.+|+.+++..| |++||+++..+ ...+ .+|+.+|...|++
T Consensus 257 ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l~~~~~G~~gv~~~~~~l~~el~~~m~~~G~~ 320 (332)
T 1vcf_A 257 LPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALEGAERVAAWIGDYLEELRTALFAIGAR 320 (332)
T ss_dssp SCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CeEEEECCCCCHHHHHHHHHhCCChHhhhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999875 49999988422 1111 2999999999954
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=180.23 Aligned_cols=229 Identities=12% Similarity=0.080 Sum_probs=170.4
Q ss_pred ccccccccccCCceEEccCCC---C----CCHHHHHHHHH--cCCCEEEecceec-hhhhhhhhhhhcccccccccCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR---M----NTLPFRLLALD--YGADLVYSEELVD-HKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~---~----t~~~~r~~~~~--~G~g~~~te~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
+++++.|.++++||++|||.. . ++.+++..|++ .|++++++++.+. .....
T Consensus 179 ~st~i~G~~l~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~------------------- 239 (511)
T 1kbi_A 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEII------------------- 239 (511)
T ss_dssp CCEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHH-------------------
T ss_pred CccccCCccCCCCeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHH-------------------
Confidence 889999999999999999996 3 35678888989 9999999987432 11110
Q ss_pred CceeeecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCcc-c---------------cc------cCC
Q psy4398 90 GSVVFRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQ-F---------------SL------TGG 145 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~-~---------------~~------~~~ 145 (306)
...+..+.|...||. +.+++...++++++++ ||++|.||+.||.. + .. .+.
T Consensus 240 -----~~~~~~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~ 314 (511)
T 1kbi_A 240 -----EAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEE 314 (511)
T ss_dssp -----HTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSS
T ss_pred -----hhcCCCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccc
Confidence 000012358899997 8889889999999975 99999999999871 1 00 011
Q ss_pred ccc--ccc---CChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHH
Q psy4398 146 MGA--ALL---STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMI 220 (306)
Q Consensus 146 ~G~--~l~---~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v 220 (306)
+++ .++ .++++..+.++++++.+++||.+|.- .+ .+.|+.++++|+|+|++++....+....+..++.+
T Consensus 315 ~~g~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv--~~----~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l 388 (511)
T 1kbi_A 315 SQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGV--QR----TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVL 388 (511)
T ss_dssp CCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEE--CS----HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHH
T ss_pred cccHHHHHhhccChHhHHHHHHHHHHHhCCcEEEEeC--CC----HHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHH
Confidence 111 122 46777778899999999999999954 22 56688999999999999543222233445678999
Q ss_pred HHHHhhC-------CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC---------ch-H--HHHHHHHHhcCCC
Q psy4398 221 RTLTQHL-------KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK---------LP-K--TILYAHCKYKRFE 278 (306)
Q Consensus 221 ~~i~~~~-------~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~---------~~-~--~~l~~~~~~~g~~ 278 (306)
.++++++ ++|||++|||++..|+.+++..|+ ++||+++.... .. . .+|+.+|...|..
T Consensus 389 ~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~ 468 (511)
T 1kbi_A 389 AETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVT 468 (511)
T ss_dssp HHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9998887 799999999999999999998764 99999875331 11 1 2899999999975
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-19 Score=162.49 Aligned_cols=199 Identities=16% Similarity=0.151 Sum_probs=148.4
Q ss_pred cccCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceE
Q psy4398 27 INYSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKII 105 (306)
Q Consensus 27 l~l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i 105 (306)
+.+++||++|||.++++..++..+.++|+ |++.+++++++.+....+.... . .+.|+.
T Consensus 9 l~~~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~------------------~---~~~p~g 67 (332)
T 2z6i_A 9 LKIDYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKS------------------L---TDKPFG 67 (332)
T ss_dssp HTCSSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHH------------------H---CCSCEE
T ss_pred hCCCCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHH------------------h---cCCCEE
Confidence 34899999999999999999988777774 9999988765543221111100 0 135899
Q ss_pred EEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHH
Q psy4398 106 LQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD 184 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~ 184 (306)
+|++..+++ +.+.++.+. .|+|+|++|.+||. ++++++++ .++|+++|+.
T Consensus 68 vnl~~~~~~-~~~~~~~a~~~g~d~V~~~~g~p~--------------------~~i~~l~~-~g~~v~~~v~------- 118 (332)
T 2z6i_A 68 VNIMLLSPF-VEDIVDLVIEEGVKVVTTGAGNPS--------------------KYMERFHE-AGIIVIPVVP------- 118 (332)
T ss_dssp EEECTTSTT-HHHHHHHHHHTTCSEEEECSSCGG--------------------GTHHHHHH-TTCEEEEEES-------
T ss_pred EEecCCCCC-HHHHHHHHHHCCCCEEEECCCChH--------------------HHHHHHHH-cCCeEEEEeC-------
Confidence 999886653 666666665 59999999999873 24566665 3889999985
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCC-CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPR-HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~-~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
..+.++.+++.|+|+|.+++... +... ....|++++++++.+++|||++|||+|.+++.++++. ++++||+++.+
T Consensus 119 ~~~~a~~~~~~GaD~i~v~g~~~-GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~ 197 (332)
T 2z6i_A 119 SVALAKRMEKIGADAVIAEGMEA-GGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVA 197 (332)
T ss_dssp SHHHHHHHHHTTCSCEEEECTTS-SEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTB
T ss_pred CHHHHHHHHHcCCCEEEEECCCC-CCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence 34567888999999999987643 2222 2468899999999999999999999999999999987 45999999999
Q ss_pred CCch-HHHHHHHHHhcC
Q psy4398 261 EKLP-KTILYAHCKYKR 276 (306)
Q Consensus 261 p~~~-~~~l~~~~~~~g 276 (306)
|.+. ....++.+.+-.
T Consensus 198 ~e~~~~~~~k~~~~~~~ 214 (332)
T 2z6i_A 198 KESNAHPNYKEKILKAR 214 (332)
T ss_dssp TTCCSCHHHHHHHHHCC
T ss_pred ccccccHHHHHHHHhCC
Confidence 9443 345666665433
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=162.30 Aligned_cols=230 Identities=16% Similarity=0.141 Sum_probs=154.5
Q ss_pred ccccccccccCCceEEccCCCCCCHH------HHHHHHHcCCCEEEecceec--hhhhhhhhhhhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLP------FRLLALDYGADLVYSEELVD--HKLVKTERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~------~r~~~~~~G~g~~~te~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (306)
++++++|.+|++||++|||++.++.+ ++..|++.|+++.+.++... ++....... .+.
T Consensus 49 ~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~~~s~~---~vr----------- 114 (368)
T 3vkj_A 49 TKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFA---IVR----------- 114 (368)
T ss_dssp CCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGGSHHHH---HHH-----------
T ss_pred ceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHHHhhHH---HHH-----------
Confidence 88899999999999999999998876 47778899999999998643 222111100 000
Q ss_pred eeeecCCCCCCceEEEecC------CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChH-HHHHHHHHH
Q psy4398 92 VVFRTCPREKNKIILQIGT------ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPD-IACNILTTL 164 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g------~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~-~~~eiv~~v 164 (306)
+.. .+.|++.+++. .+++...++++.+.+++..|.||.. ..... ..|. .+.+ ...+.++.+
T Consensus 115 ---~~a--p~~~~~anlg~~ql~~~~~~~~~~~av~~~~a~al~Ihln~~---~~~~~-p~g~---~~~~~~~~~~i~~i 182 (368)
T 3vkj_A 115 ---KVA--PTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPA---QEVFQ-PEGE---PEYQIYALEKLRDI 182 (368)
T ss_dssp ---HHC--SSSCEEEEEEGGGGGTTCCHHHHHHHHHHTTCSEEEEECCHH---HHHHS-SSCC---CBCBTHHHHHHHHH
T ss_pred ---HhC--cCcceecCcCeeecCCCCCHHHHHHHHHHhcCCCeEEEecch---hhhhC-CCCC---chhhHHHHHHHHHH
Confidence 001 13467666654 6778877877777444444444422 11111 0111 1112 367788999
Q ss_pred HhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEccc--C--------CCC-------------CCCCCCcHHHHH
Q psy4398 165 ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR--T--------KAE-------------RPRHRNRIEMIR 221 (306)
Q Consensus 165 ~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~--~--------~~~-------------~~~~p~~~~~v~ 221 (306)
++.+++||.+|. .|+.. ..+.|+.++++|+|+|++++. + +.. ...+.+....+.
T Consensus 183 ~~~~~vPVivK~-vG~g~--s~~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~ 259 (368)
T 3vkj_A 183 SKELSVPIIVKE-SGNGI--SMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIM 259 (368)
T ss_dssp HTTCSSCEEEEC-SSSCC--CHHHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHH
T ss_pred HHHcCCCEEEEe-CCCCC--CHHHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccccHHHHHH
Confidence 999999999996 33322 256789999999999999553 2 100 000223456778
Q ss_pred HHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC----CCC-ch----H--HHHHHHHHhcCCC
Q psy4398 222 TLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP----VEK-LP----K--TILYAHCKYKRFE 278 (306)
Q Consensus 222 ~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~----~p~-~~----~--~~l~~~~~~~g~~ 278 (306)
++++.+ ++|||++|||++..|+.+++..|+ ++||+++. +|. .. . .+|+.+|...|++
T Consensus 260 ~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~~~~~G~~~v~~~l~~l~~eL~~~m~~~G~~ 331 (368)
T 3vkj_A 260 EVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIEGKESLEQFFRKIIFELKAAMMLTGSK 331 (368)
T ss_dssp HHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888888 599999999999999999998764 99998873 551 11 1 2999999999955
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=162.08 Aligned_cols=225 Identities=13% Similarity=0.028 Sum_probs=161.2
Q ss_pred ccccccccccCCceEEccCCC--C----CCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR--M----NTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~--~----t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++.|.++++||++|||.+ . ++.+++..+++.|+++++++.. ..++..- .
T Consensus 62 ~st~i~G~~l~~Pv~iap~~~~~~~~~~~~~~~a~aa~~~G~~~~vss~s-~~~le~i-~-------------------- 119 (380)
T 1p4c_A 62 LQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTAS-NMSIEDL-A-------------------- 119 (380)
T ss_dssp CCEEETTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTTC-SSCHHHH-H--------------------
T ss_pred ceeEECCeecCCceEecCccccccCCCcHHHHHHHHHHHcCCCeecCccc-cCCHHHH-H--------------------
Confidence 889999999999999999964 3 5566888899999999999732 2222110 0
Q ss_pred eecCCCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEE--------------ccCCCcc---ccc--------c--CC
Q psy4398 94 FRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDI--------------NMGCPKQ---FSL--------T--GG 145 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~vel--------------n~gcP~~---~~~--------~--~~ 145 (306)
.. .+.+...||.-...+...+..+++++ |++.++| |.+|+.+ +.. . ..
T Consensus 120 -~~---~~~~~~fQly~~~~~~~~~~i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~ 195 (380)
T 1p4c_A 120 -RQ---CDGDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKA 195 (380)
T ss_dssp -HH---CCSCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSST
T ss_pred -hc---cCCCeEEEEEechHHHHHHHHHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcc
Confidence 00 13478889974445556666677764 9999887 3456322 110 0 01
Q ss_pred ccccc---cC---ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEE--cccCCCCCCCCCCcH
Q psy4398 146 MGAAL---LS---TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV--HGRTKAERPRHRNRI 217 (306)
Q Consensus 146 ~G~~l---~~---~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v--~~~~~~~~~~~p~~~ 217 (306)
.+..+ .. +|++..++++++++.+++||.+|.- . +.+.++.+.++|+|+|.+ |++. +...++.++
T Consensus 196 ~~~ala~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkgv--~----t~e~a~~a~~aGad~I~vs~~gg~--~~d~~~~~~ 267 (380)
T 1p4c_A 196 NLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGL--L----SAEDADRCIAEGADGVILSNHGGR--QLDCAISPM 267 (380)
T ss_dssp TTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEE--C----CHHHHHHHHHTTCSEEEECCGGGT--SCTTCCCGG
T ss_pred cchHHHHHHHhhcCccccHHHHHHHHHhcCCCEEEEec--C----cHHHHHHHHHcCCCEEEEcCCCCC--cCCCCcCHH
Confidence 11111 12 6777789999999999999999953 2 356788999999999999 5443 223356689
Q ss_pred HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCC---------ch-H--HHHHHHHHhcCCC
Q psy4398 218 EMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK---------LP-K--TILYAHCKYKRFE 278 (306)
Q Consensus 218 ~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~---------~~-~--~~l~~~~~~~g~~ 278 (306)
+.+.++++.+++|||++|||++.+|+.+++..| +++||+++.+.. .. . .+++.+|...|..
T Consensus 268 ~~l~~v~~~~~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~~~~~g~~~v~~~~~~l~~el~~~m~~~G~~ 343 (380)
T 1p4c_A 268 EVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCP 343 (380)
T ss_dssp GTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999875 499999876531 11 1 1899999999965
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=152.43 Aligned_cols=194 Identities=12% Similarity=0.086 Sum_probs=140.0
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHH-HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLL-ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCP 98 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~-~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (306)
+++++.++++++||++|||.++++..++.. ++.+|+|++++++... .. .++ +..+
T Consensus 36 l~t~i~g~~l~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~~--~~-------~~i---------------~~~~ 91 (336)
T 1ypf_A 36 TTVTLGKHKFKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEK--RI-------SFI---------------RDMQ 91 (336)
T ss_dssp CCEEETTEEESSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGGG--HH-------HHH---------------HHHH
T ss_pred ceEEECCEEecCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCHH--HH-------HHH---------------HHHH
Confidence 889999999999999999999999998664 5566789888775321 10 000 0011
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHHhcC--CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 99 REKNKIILQIGTADPERALEAAKKVEHD--VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~~~aa~~~~~g--~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
+.+.|+.+|+ +..++++..+....+.| ++.|++|++. | ++....++++++++.++.|+.+|=
T Consensus 92 ~~g~~v~v~~-g~~~~~~~~a~~~~~~g~~~~~i~i~~~~----------G-----~~~~~~~~i~~lr~~~~~~~vi~G 155 (336)
T 1ypf_A 92 SRGLIASISV-GVKEDEYEFVQQLAAEHLTPEYITIDIAH----------G-----HSNAVINMIQHIKKHLPESFVIAG 155 (336)
T ss_dssp HTTCCCEEEE-CCSHHHHHHHHHHHHTTCCCSEEEEECSS----------C-----CSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred hcCCeEEEeC-CCCHHHHHHHHHHHhcCCCCCEEEEECCC----------C-----CcHHHHHHHHHHHHhCCCCEEEEC
Confidence 1245788996 66777776654555567 9999998742 2 567788999999999854444442
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEc--ccCCC----CCCCCCC--cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVH--GRTKA----ERPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~--~~~~~----~~~~~p~--~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
.. . ..+.|+.++++|+|+|++. +.... ....+.+ .++.+.++++++++|||++|||++..|+.+++.
T Consensus 156 ~v-~----s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kala 230 (336)
T 1ypf_A 156 NV-G----TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIR 230 (336)
T ss_dssp EE-C----SHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHH
T ss_pred Cc-C----CHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH
Confidence 11 1 2578899999999999993 32210 0111112 688999999999999999999999999999998
Q ss_pred hh---hhhccccC
Q psy4398 249 LN---CAFLRNHY 258 (306)
Q Consensus 249 ~~---v~vGrall 258 (306)
.| |++||+++
T Consensus 231 lGAdaV~iGr~~l 243 (336)
T 1ypf_A 231 FGATMVMIGSLFA 243 (336)
T ss_dssp TTCSEEEESGGGT
T ss_pred cCCCEEEeChhhh
Confidence 75 49999998
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-18 Score=156.44 Aligned_cols=235 Identities=12% Similarity=0.106 Sum_probs=146.0
Q ss_pred eeccc-ccccccccccCCceEEccCCCCCCHH------HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCC
Q psy4398 15 YVLDM-ANANQANINYSNKIILAPMVRMNTLP------FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87 (306)
Q Consensus 15 ~~~~~-~~~~~~~l~l~n~i~lAPm~~~t~~~------~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (306)
.+.+. ++++++|.++++||++|||++.+..+ ++..|++.|.++.+.++...-.- +.. .+
T Consensus 70 ~~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~le~----~~~----~~------ 135 (365)
T 3sr7_A 70 DLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTALKN----PDD----TS------ 135 (365)
T ss_dssp CGGGCCCCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC----------------------------
T ss_pred CcccccceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeecccccccccC----ccc----cc------
Confidence 33444 88899999999999999999877644 77778899999998887542110 000 00
Q ss_pred CCCceeeecCCCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh
Q psy4398 88 LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS 166 (306)
Q Consensus 88 ~~~~~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~ 166 (306)
..+.+..| +.+++.+|+..... .++.+.++. ++|++++|+...+...... | ..+.+.+.+.++.+++
T Consensus 136 ---~~v~r~~P--~~~~ianig~~~~~--e~~~~~ve~~~adal~ihln~~qe~~~p~--G---d~~~~~~~~~I~~l~~ 203 (365)
T 3sr7_A 136 ---YQVKKSRP--HLLLATNIGLDKPY--QAGLQAVRDLQPLFLQVHINLMQELLMPE--G---EREFRSWKKHLSDYAK 203 (365)
T ss_dssp --------------CCEEEEEETTSCH--HHHHHHHHHHCCSCEEEEECHHHHHTSSS--S---CCCCHHHHHHHHHHHH
T ss_pred ---eEehhhCC--CCcEEEEeCCCCCH--HHHHHHHHhcCCCEEEEeccccccccCCC--C---CCcHHHHHHHHHHHHH
Confidence 00111112 46888999764332 244555544 8899999877433211111 1 1234457789999999
Q ss_pred cccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCC---------------CCCCCcHHHHHHHHhhC-CCc
Q psy4398 167 NLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER---------------PRHRNRIEMIRTLTQHL-KIP 230 (306)
Q Consensus 167 ~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~---------------~~~p~~~~~v~~i~~~~-~ip 230 (306)
.+++||.+|. .|+. ...+.|+.+.++|+|+|++++...... ..+.+..+.+.+++... ++|
T Consensus 204 ~~~~PVivK~-vg~g--~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ip 280 (365)
T 3sr7_A 204 KLQLPFILKE-VGFG--MDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVE 280 (365)
T ss_dssp HCCSCEEEEE-CSSC--CCHHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGTTTSE
T ss_pred hhCCCEEEEE-CCCC--CCHHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhcCCCe
Confidence 9999999994 3322 134678889999999999976521110 01223445666665443 799
Q ss_pred EEEecCCCCHHHHHHHHHhhh---hhccccCC-----CC-C----chHH--HHHHHHHhcCCC
Q psy4398 231 VIANGGSKEIVDYGGVFSLNC---AFLRNHYP-----VE-K----LPKT--ILYAHCKYKRFE 278 (306)
Q Consensus 231 via~GGI~s~~~~~~~l~~~v---~vGrall~-----~p-~----~~~~--~l~~~~~~~g~~ 278 (306)
||++|||++..|+.+++..|+ ++||+++. ++ . +..+ +|+.+|...|++
T Consensus 281 via~GGI~~g~Dv~KaLalGAdaV~ig~~~l~a~~~~G~~~v~~~l~~l~~eL~~~m~~~G~~ 343 (365)
T 3sr7_A 281 ILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQ 343 (365)
T ss_dssp EEECSSCCSHHHHHHHHHHTCSEEEESHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999998764 99998873 32 1 1122 999999999965
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-16 Score=143.09 Aligned_cols=198 Identities=16% Similarity=0.196 Sum_probs=142.5
Q ss_pred ccccCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCce
Q psy4398 26 NINYSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKI 104 (306)
Q Consensus 26 ~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ 104 (306)
.+.+++||++|||.+.++..++..+.+.|+ |++.+++.+++.+....+... ...+.|+
T Consensus 22 ~l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~---------------------~~~~~p~ 80 (326)
T 3bo9_A 22 LLEIEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELR---------------------QKTDKPF 80 (326)
T ss_dssp HHTCSSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHH---------------------TTCSSCE
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHH---------------------HhcCCCE
Confidence 467899999999999999999998777764 888777765544322111110 0123589
Q ss_pred EEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChH
Q psy4398 105 ILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA 183 (306)
Q Consensus 105 ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~ 183 (306)
.+|++..+++ +.+.++.+ +.|+|.|.+|++||. ++++.+++ .++++.+++.
T Consensus 81 gVnl~~~~~~-~~~~~~~~~~~g~d~V~l~~g~p~--------------------~~~~~l~~-~g~~v~~~v~------ 132 (326)
T 3bo9_A 81 GVNIILVSPW-ADDLVKVCIEEKVPVVTFGAGNPT--------------------KYIRELKE-NGTKVIPVVA------ 132 (326)
T ss_dssp EEEEETTSTT-HHHHHHHHHHTTCSEEEEESSCCH--------------------HHHHHHHH-TTCEEEEEES------
T ss_pred EEEEeccCCC-HHHHHHHHHHCCCCEEEECCCCcH--------------------HHHHHHHH-cCCcEEEEcC------
Confidence 9998875543 34444544 459999999988863 13455554 3788888876
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
..+.++.+++.|+|+|.++++...+......+|+++.++++.+++|||+.|||+|.+++.++++. ++++||+++..
T Consensus 133 -s~~~a~~a~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~ 211 (326)
T 3bo9_A 133 -SDSLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVAS 211 (326)
T ss_dssp -SHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTB
T ss_pred -CHHHHHHHHHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcC
Confidence 34667788899999999988654332112458999999999999999999999999999999987 45999999987
Q ss_pred CCc-hHHHHHHHHH
Q psy4398 261 EKL-PKTILYAHCK 273 (306)
Q Consensus 261 p~~-~~~~l~~~~~ 273 (306)
+.. .....++.+.
T Consensus 212 ~e~~~~~~~k~~~~ 225 (326)
T 3bo9_A 212 VESDVHPVYKEKIV 225 (326)
T ss_dssp SSCCSCHHHHHHHH
T ss_pred ccccccHHHHHHHH
Confidence 743 2335555553
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=142.38 Aligned_cols=203 Identities=12% Similarity=0.160 Sum_probs=139.0
Q ss_pred cccccccccCCceEEccCCC-CCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCC
Q psy4398 21 NANQANINYSNKIILAPMVR-MNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCP 98 (306)
Q Consensus 21 ~~~~~~l~l~n~i~lAPm~~-~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (306)
++++..+- +.||+.|||.+ +++..++..+.++|. |++.+++.+++.+....+.....
T Consensus 2 ~t~~~~~~-~~Pii~apMaggvs~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~~~~~-------------------- 60 (369)
T 3bw2_A 2 SSALTDLF-PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRLRGL-------------------- 60 (369)
T ss_dssp -CTTTTSS-SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHHHHHH--------------------
T ss_pred CchhhhhC-cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHHHHHh--------------------
Confidence 34455543 99999999995 999999988777764 88888888776554322221111
Q ss_pred CCCCceEEEecCCCH----------------------------------HHHHHHHHHHh-cCCCEEEEccCCCcccccc
Q psy4398 99 REKNKIILQIGTADP----------------------------------ERALEAAKKVE-HDVAAIDINMGCPKQFSLT 143 (306)
Q Consensus 99 ~~~~p~ivql~g~~~----------------------------------~~~~~aa~~~~-~g~d~veln~gcP~~~~~~ 143 (306)
.+.|+.+|++...+ +.+.+.++.+. .|+|.|.+|++||.
T Consensus 61 -~~~p~gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~----- 134 (369)
T 3bw2_A 61 -TGRPFGVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPD----- 134 (369)
T ss_dssp -CCSCEEEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCC-----
T ss_pred -CCCCeEEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCc-----
Confidence 12356666554321 11344455454 49999999999874
Q ss_pred CCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC---CCCC---C----
Q psy4398 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA---ERPR---H---- 213 (306)
Q Consensus 144 ~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~---~~~~---~---- 213 (306)
.++++.+++ .++++.+++. ..+.++.+++.|+|+|.+++.... +... .
T Consensus 135 --------------~~~i~~~~~-~g~~v~~~v~-------t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~ 192 (369)
T 3bw2_A 135 --------------REVIARLRR-AGTLTLVTAT-------TPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGA 192 (369)
T ss_dssp --------------HHHHHHHHH-TTCEEEEEES-------SHHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTC
T ss_pred --------------HHHHHHHHH-CCCeEEEECC-------CHHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccc
Confidence 234556655 3788888875 234577888999999999765421 1110 0
Q ss_pred -CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCchH-HHHHHHH
Q psy4398 214 -RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPK-TILYAHC 272 (306)
Q Consensus 214 -p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~-~~l~~~~ 272 (306)
...+++++++++.+++|||+.|||.|.+++.++++.| +++||+++.+|+++. ...++.+
T Consensus 193 ~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~~~~~~~k~~i 256 (369)
T 3bw2_A 193 GIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDESGAPGPHKRAL 256 (369)
T ss_dssp CCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTCCCCHHHHHHT
T ss_pred cccHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCcccCccHHHHHHH
Confidence 1238999999999999999999999999999999874 599999999885543 3444433
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-15 Score=138.07 Aligned_cols=198 Identities=11% Similarity=0.133 Sum_probs=138.0
Q ss_pred cccCCceEEccCCCCCCHHHHHHHHHcC-CCEEEeccee-chhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCce
Q psy4398 27 INYSNKIILAPMVRMNTLPFRLLALDYG-ADLVYSEELV-DHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKI 104 (306)
Q Consensus 27 l~l~n~i~lAPm~~~t~~~~r~~~~~~G-~g~~~te~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ 104 (306)
+.++.||++|||.++++..++..+.+.| .|++.+++.. ++.+....+.... . .+.|+
T Consensus 12 l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~------------------~---~~~p~ 70 (328)
T 2gjl_A 12 FGVEHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRE------------------L---TDRPF 70 (328)
T ss_dssp HTCSSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHH------------------H---CSSCC
T ss_pred hCCCCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHH------------------h---cCCCe
Confidence 3579999999999999999998877766 5888877654 3222211111000 0 13477
Q ss_pred EEEecCCC---HHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 105 ILQIGTAD---PERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 105 ivql~g~~---~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
.+|+..+. ..++.+.++.+. .|+|.|.+|+++|. ++++.+++. ++++.+++.
T Consensus 71 ~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g~p~--------------------~~~~~l~~~-gi~vi~~v~--- 126 (328)
T 2gjl_A 71 GVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGNDPG--------------------EHIAEFRRH-GVKVIHKCT--- 126 (328)
T ss_dssp EEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEESCCH--------------------HHHHHHHHT-TCEEEEEES---
T ss_pred EEEEeccccccCccHHHHHHHHHhcCCCEEEEcCCCcH--------------------HHHHHHHHc-CCCEEeeCC---
Confidence 88877651 123555555554 59999999987752 345666664 788887765
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCC--CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhcc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAER--PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLR 255 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~--~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGr 255 (306)
..+.++.+++.|+|+|.+++....+. ...+.+|+++.++++.+++|||+.|||.+.+++.++++. ++++||
T Consensus 127 ----t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~~GAdgV~vGs 202 (328)
T 2gjl_A 127 ----AVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALALGADAINMGT 202 (328)
T ss_dssp ----SHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred ----CHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 24556778899999999987654321 112358899999999999999999999999999999886 459999
Q ss_pred ccCCCCCc-hHHHHHHHHH
Q psy4398 256 NHYPVEKL-PKTILYAHCK 273 (306)
Q Consensus 256 all~~p~~-~~~~l~~~~~ 273 (306)
+++..+.. ....+++.+.
T Consensus 203 ~~~~~~e~~~~~~~k~~~~ 221 (328)
T 2gjl_A 203 RFLATRECPIHPAVKAAIR 221 (328)
T ss_dssp HHHTSSSSCSCHHHHHHHH
T ss_pred HHHcCccccccHHHHHHHH
Confidence 99988742 2234445443
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=143.47 Aligned_cols=221 Identities=12% Similarity=0.082 Sum_probs=138.1
Q ss_pred cccccc-ccccCCceEEccCCCCCCHHHHHHHHHcC-CCEEEecceechhhhhhhhhhh------cccccccc-------
Q psy4398 20 ANANQA-NINYSNKIILAPMVRMNTLPFRLLALDYG-ADLVYSEELVDHKLVKTERKVN------DLLNTIDF------- 84 (306)
Q Consensus 20 ~~~~~~-~l~l~n~i~lAPm~~~t~~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~------~~l~~~~~------- 84 (306)
+++++. ++++++||++|||.+.++..++..+.+.| .|.+. .+.+.+.......... ++++...+
T Consensus 31 lst~l~~g~~l~~Pii~Apm~~~~~~ela~a~a~aGglg~i~-~~~s~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l 109 (404)
T 1eep_A 31 LKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIH-KNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEI 109 (404)
T ss_dssp CCEESSSSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEEC-SSSCHHHHHHHHHHHHTCC------------------
T ss_pred cceeccCCcccCCCEEeCCCCCCCCHHHHHHHHHCCCEEEEC-CCCCHHHHHHHHHHHHhhccCCCceeccccccccccc
Confidence 788888 99999999999999999999888765655 45554 5555554432211100 01110000
Q ss_pred c----CCCCC---ceee--ec----CC--CCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCcccc
Q psy4398 85 V----DPLDG---SVVF--RT----CP--REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149 (306)
Q Consensus 85 ~----~~~~~---~~~~--~~----~~--~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~ 149 (306)
. +.+.. +... .. +. +...++++++.. +++....+...++.|+|.|+||.++ |
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~-~~~~~~~a~~~~~~G~d~i~i~~~~----------g-- 176 (404)
T 1eep_A 110 FTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSI-DIDTIERVEELVKAHVDILVIDSAH----------G-- 176 (404)
T ss_dssp --------------------CCTTCCBCTTSCBCCEEEECS-CTTHHHHHHHHHHTTCSEEEECCSC----------C--
T ss_pred cccCCCCCHHHHHHHHHHhhhcchhhhhcccCceEEEEeCC-ChhHHHHHHHHHHCCCCEEEEeCCC----------C--
Confidence 0 00000 0000 00 11 112357888865 3333333333345699999998654 1
Q ss_pred ccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC------CCCCCCCcHHHHHH
Q psy4398 150 LLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA------ERPRHRNRIEMIRT 222 (306)
Q Consensus 150 l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~------~~~~~p~~~~~v~~ 222 (306)
+++.+.++++++++.+ ++||.++-- . ..+.++.++++|+|+|.+...... ....+...++.+..
T Consensus 177 ---~~~~~~e~i~~ir~~~~~~pviv~~v--~----~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~ 247 (404)
T 1eep_A 177 ---HSTRIIELIKKIKTKYPNLDLIAGNI--V----TKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICD 247 (404)
T ss_dssp ---SSHHHHHHHHHHHHHCTTCEEEEEEE--C----SHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHHCCCCeEEEcCC--C----cHHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcchHHHHHH
Confidence 3578889999999988 789998432 2 257788899999999999321100 00112235666666
Q ss_pred HHh---hCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCc
Q psy4398 223 LTQ---HLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKL 263 (306)
Q Consensus 223 i~~---~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~ 263 (306)
+++ .+++|||++|||++.+|+.+++..| +++||+++..|..
T Consensus 248 v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~ 294 (404)
T 1eep_A 248 VYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKES 294 (404)
T ss_dssp HHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTS
T ss_pred HHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCC
Confidence 655 5689999999999999999999875 4999999876644
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-14 Score=131.46 Aligned_cols=195 Identities=19% Similarity=0.144 Sum_probs=133.9
Q ss_pred cccccc-ccccCCceEEccCCCCCCHHHHHH-HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecC
Q psy4398 20 ANANQA-NINYSNKIILAPMVRMNTLPFRLL-ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97 (306)
Q Consensus 20 ~~~~~~-~l~l~n~i~lAPm~~~t~~~~r~~-~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 97 (306)
+++++. +++++.||+.|||.++++..++.. ++.+|.|++.. ..+++......+...
T Consensus 34 l~t~l~~~~~l~~Pii~apM~~vt~~~lA~avA~~GGlgii~~-~~s~e~~~~~I~~vk--------------------- 91 (361)
T 3khj_A 34 LETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHK-NMDMESQVNEVLKVK--------------------- 91 (361)
T ss_dssp CCEESSSSCEESSSEEECSSTTTCSHHHHHHHHHTTCEEEECS-SSCHHHHHHHHHHHH---------------------
T ss_pred CceecccccccCCCEEeecCCCCCcHHHHHHHHHcCCCeEEec-CCCHHHHHHHHHHHH---------------------
Confidence 666776 789999999999999999998874 55667777653 333322221111100
Q ss_pred CCCCCceEEEecCCCHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 98 PREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
.....|+.++++..+ .+.++ .+++|+|.|.||.+. .+++.+.+.++.+++.++.||.++.
T Consensus 92 ~~~~~pvga~ig~~~----~e~a~~l~eaGad~I~ld~a~---------------G~~~~~~~~i~~i~~~~~~~Vivg~ 152 (361)
T 3khj_A 92 NSGGLRVGAAIGVNE----IERAKLLVEAGVDVIVLDSAH---------------GHSLNIIRTLKEIKSKMNIDVIVGN 152 (361)
T ss_dssp HTTCCCCEEEECTTC----HHHHHHHHHTTCSEEEECCSC---------------CSBHHHHHHHHHHHHHCCCEEEEEE
T ss_pred hccCceEEEEeCCCH----HHHHHHHHHcCcCeEEEeCCC---------------CCcHHHHHHHHHHHHhcCCcEEEcc
Confidence 012357889986655 33334 345699999998653 1356777889999888889999864
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccC--CCC----CCCCCCcHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHH
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRT--KAE----RPRHRNRIEMIRTLTQ---HLKIPVIANGGSKEIVDYGGVF 247 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~--~~~----~~~~p~~~~~v~~i~~---~~~ipvia~GGI~s~~~~~~~l 247 (306)
- . +.+.++.+.++|+|+|.+.... ... ...+.+.+..+.++++ .+++|||+.|||.+.+++.+++
T Consensus 153 v--~----t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kal 226 (361)
T 3khj_A 153 V--V----TEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKAL 226 (361)
T ss_dssp E--C----SHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHH
T ss_pred C--C----CHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHH
Confidence 4 2 3566788899999999983111 000 1122346666666644 4589999999999999999999
Q ss_pred Hhh---hhhccccCCCC
Q psy4398 248 SLN---CAFLRNHYPVE 261 (306)
Q Consensus 248 ~~~---v~vGrall~~p 261 (306)
..| +++|++++..+
T Consensus 227 a~GAd~V~vGs~~~~t~ 243 (361)
T 3khj_A 227 AVGASSVMIGSILAGTE 243 (361)
T ss_dssp HHTCSEEEESTTTTTBT
T ss_pred HcCCCEEEEChhhhcCC
Confidence 875 49999998754
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=127.70 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=93.5
Q ss_pred HhcCCCEEE--EccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe---ccCCChHHHHHHHHHHHHcCC
Q psy4398 123 VEHDVAAID--INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI---RVFHNEADTIALCKRLEACGI 197 (306)
Q Consensus 123 ~~~g~d~ve--ln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi---r~g~~~~~~~~~a~~l~~~G~ 197 (306)
++.|+|.|| +|++|- +.+ +.+.+.+.++++++.++ |+.+|+ +.+++.++..++++.++++|+
T Consensus 80 ~~~Gad~Id~viN~g~~----~~~--------~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGa 146 (225)
T 1mzh_A 80 VRDGAQELDIVWNLSAF----KSE--------KYDFVVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGA 146 (225)
T ss_dssp HHTTCSEEEEECCHHHH----HTT--------CHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCEEEEEecHHHH----hcC--------ChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 346999999 798881 111 34566777999999888 999999 777888889999999999999
Q ss_pred cEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhccc
Q psy4398 198 IAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFLRN 256 (306)
Q Consensus 198 d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vGra 256 (306)
|+|..+ .+.+.+..+++.++.+++.+ ++||+++|||+|.+++.++++.|+ .+|..
T Consensus 147 d~I~ts----tg~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s 204 (225)
T 1mzh_A 147 DFIKTS----TGFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTS 204 (225)
T ss_dssp SEEECC----CSCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CEEEEC----CCCCCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHc
Confidence 999432 23334456899999999988 799999999999999999998776 44544
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=128.34 Aligned_cols=192 Identities=14% Similarity=0.090 Sum_probs=130.7
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPR 99 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 99 (306)
+++++.+++++.||+.|||..+++..++..+.+.|.-.++....+.+......+.
T Consensus 32 ~~t~l~g~~l~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~~~~s~ee~~~~i~~------------------------- 86 (361)
T 3r2g_A 32 STDRLGKLTLNLPVISANMDTITESNMANFMHSKGAMGALHRFMTIEENIQEFKK------------------------- 86 (361)
T ss_dssp EECTTSSCEESSCEEECCSTTTCSHHHHHHHHHTTCEEBCCSCSCHHHHHHHHHT-------------------------
T ss_pred eeEEECCEEcCCCEEECCCCCchHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhh-------------------------
Confidence 4558899999999999999999999999987777754444554443333221110
Q ss_pred CCCceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEec
Q psy4398 100 EKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIR 177 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir 177 (306)
....+.+.+ +.. +...+.++++ ++|+|.|+++..+.+ ++.+.++++.+++.. ++||.+|--
T Consensus 87 ~~~~~~~~~-g~~-~~~~e~~~~a~~aGvdvI~id~a~G~---------------~~~~~e~I~~ir~~~~~~~Vi~G~V 149 (361)
T 3r2g_A 87 CKGPVFVSV-GCT-ENELQRAEALRDAGADFFCVDVAHAH---------------AKYVGKTLKSLRQLLGSRCIMAGNV 149 (361)
T ss_dssp CCSCCBEEE-CSS-HHHHHHHHHHHHTTCCEEEEECSCCS---------------SHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEEEc-CCC-HHHHHHHHHHHHcCCCEEEEeCCCCC---------------cHhHHHHHHHHHHhcCCCeEEEcCc
Confidence 011222333 223 3445556655 469999999876532 245678899999876 789999732
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCC------CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh-
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAE------RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN- 250 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~------~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~- 250 (306)
. +.+.|+.+.++|+|+|.+....... ...+.+.++.+.++++... |||+.|||++..++.++++.|
T Consensus 150 --~----T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GA 222 (361)
T 3r2g_A 150 --A----TYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGA 222 (361)
T ss_dssp --C----SHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTC
T ss_pred --C----CHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCC
Confidence 1 2456888999999999983211000 0112236777777777665 999999999999999999986
Q ss_pred --hhhccccCCC
Q psy4398 251 --CAFLRNHYPV 260 (306)
Q Consensus 251 --v~vGrall~~ 260 (306)
|++||+++.-
T Consensus 223 d~V~iGr~f~~t 234 (361)
T 3r2g_A 223 DFVMIGGMLAGS 234 (361)
T ss_dssp SEEEESGGGTTB
T ss_pred CEEEEChHHhCC
Confidence 4999999864
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=129.84 Aligned_cols=154 Identities=10% Similarity=0.055 Sum_probs=116.3
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCC-----hHHHHHHHHHHH-hcccccEEEEec
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLST-----PDIACNILTTLI-SNLSIPVSCKIR 177 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~-----~~~~~eiv~~v~-~~~~~pv~vKir 177 (306)
+-+|++|.-.. . ++.+.+ .|+|.|-+ |+.++++ |+++.++++++. +.+-+++++|.+
T Consensus 77 ~pv~vgGGir~-~-~~~~~l-~Ga~~Vii--------------gs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~ 139 (260)
T 2agk_A 77 QFLQVGGGIND-T-NCLEWL-KWASKVIV--------------TSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKT 139 (260)
T ss_dssp TTSEEESSCCT-T-THHHHT-TTCSCEEE--------------CGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEE
T ss_pred ceEEEeCCCCH-H-HHHHHh-cCCCEEEE--------------CcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeeec
Confidence 44667666543 3 777777 99998876 4566677 999999999997 666667777633
Q ss_pred ---------cCCChH---HHH-HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC----CCcEEEecCCCCH
Q psy4398 178 ---------VFHNEA---DTI-ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL----KIPVIANGGSKEI 240 (306)
Q Consensus 178 ---------~g~~~~---~~~-~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~----~ipvia~GGI~s~ 240 (306)
.||... +.. ++++.+++. ++.|.+|++++++.+.++ +|++++++++.+ ++|||++|||.|+
T Consensus 140 ~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~~il~t~i~~dG~~~G~-d~eli~~l~~~~~~~~~iPVIasGGi~s~ 217 (260)
T 2agk_A 140 QDGRWIVAMNKWQTLTDLELNADTFRELRKY-TNEFLIHAADVEGLCGGI-DELLVSKLFEWTKDYDDLKIVYAGGAKSV 217 (260)
T ss_dssp ETTEEEEEETTTTEEEEEEESHHHHHHHTTT-CSEEEEEC-------CCC-CHHHHHHHHHHHTTCSSCEEEEESCCCCT
T ss_pred CCCceEEEEcCCccccCccHHHHHHHHHHHh-cCEEEEEeeccccCcCCC-CHHHHHHHHHhhcccCCceEEEeCCCCCH
Confidence 145432 356 999999999 999999999999999887 999999999999 9999999999999
Q ss_pred HHHHHHHHh--h---hhhcccc--CCCCCchHHHHHHHHHhcC
Q psy4398 241 VDYGGVFSL--N---CAFLRNH--YPVEKLPKTILYAHCKYKR 276 (306)
Q Consensus 241 ~~~~~~l~~--~---v~vGral--l~~p~~~~~~l~~~~~~~g 276 (306)
+|++++++. + +++||++ |.++-+...++.+|+++.|
T Consensus 218 ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~~~~~~~~~~ 260 (260)
T 2agk_A 218 DDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFEDCCRWNEKQG 260 (260)
T ss_dssp HHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHHHHHHHHhcC
Confidence 999999976 4 4999997 8887344445667877654
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-14 Score=130.58 Aligned_cols=228 Identities=15% Similarity=0.077 Sum_probs=156.3
Q ss_pred ccccccccccCCceEEccCCC----CCC--HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVR----MNT--LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~----~t~--~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++-||++||+.. ..+ ......+.+.|.-.+++-+.+ .++.. +
T Consensus 59 ~~t~llG~~~~~P~~iaP~g~~~l~~~~ge~~~araa~~~gi~~~lSt~ss-~s~e~----------------------v 115 (352)
T 3sgz_A 59 TRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYAS-YSLED----------------------I 115 (352)
T ss_dssp CCEEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCEEEECTTCS-SCHHH----------------------H
T ss_pred CceEECCcccCCcceechHHHHHhcCccHHHHHHHHHHHcCCCeEeCCCCC-CCHHH----------------------H
Confidence 889999999999999999873 122 224444566676555543321 11110 0
Q ss_pred eecCCCCCCceEEEec-CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccc-cC--------------Cc--------cc
Q psy4398 94 FRTCPREKNKIILQIG-TADPERALEAAKKVEH-DVAAIDINMGCPKQFSL-TG--------------GM--------GA 148 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~-g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~-~~--------------~~--------G~ 148 (306)
.... .+.|...||. ..+.+...+..+++++ ||.+|-+..-.|..-.| +| .+ ++
T Consensus 116 ~~~~--~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 193 (352)
T 3sgz_A 116 VAAA--PEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQ 193 (352)
T ss_dssp HHHS--TTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC----------
T ss_pred HHhc--cCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccc
Confidence 1111 1347888985 3466666777788875 99999988776642111 00 00 00
Q ss_pred c---ccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHh
Q psy4398 149 A---LLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQ 225 (306)
Q Consensus 149 ~---l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~ 225 (306)
. ...++.+.-+.++.+++.++.||.+|.. .+ .+.|+.++++|+|+|++++....+...++..++.+.++++
T Consensus 194 ~~~~~~~d~~~~w~~i~~lr~~~~~PvivK~v--~~----~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~ 267 (352)
T 3sgz_A 194 SVPVLFPKASFCWNDLSLLQSITRLPIILKGI--LT----KEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVA 267 (352)
T ss_dssp -----CCCTTCCHHHHHHHHHHCCSCEEEEEE--CS----HHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHH
T ss_pred hhhhhccCCCCCHHHHHHHHHhcCCCEEEEec--Cc----HHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHH
Confidence 0 1234666678899999999999999987 33 4668899999999999965432233345778999999999
Q ss_pred hC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC-----C-C---ch-H--HHHHHHHHhcCCC
Q psy4398 226 HL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV-----E-K---LP-K--TILYAHCKYKRFE 278 (306)
Q Consensus 226 ~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~-----p-~---~~-~--~~l~~~~~~~g~~ 278 (306)
.+ ++|||++|||++..|+.+++..|+ ++||+++.. + - .. . .+|+.+|...|++
T Consensus 268 av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~~~G~~ 337 (352)
T 3sgz_A 268 AVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQ 337 (352)
T ss_dssp HHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88 799999999999999999998754 999998743 2 1 11 1 2899999999954
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=130.84 Aligned_cols=221 Identities=13% Similarity=0.087 Sum_probs=135.1
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcC-CCEEEecceec-----hh----hhhhhhhh-----hcccccccc
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYG-ADLVYSEELVD-----HK----LVKTERKV-----NDLLNTIDF 84 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G-~g~~~te~~~~-----~~----~~~~~~~~-----~~~l~~~~~ 84 (306)
+++++.++++++||++|||.+.++..++..+.+.| .|.+.|+|... .. +....... .+.+.. .+
T Consensus 57 lst~l~g~~l~~Pii~Apm~g~~~~~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q-~~ 135 (393)
T 2qr6_A 57 TTWHIDAYKFDLPFMNHPSDALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQE-LH 135 (393)
T ss_dssp CCEEETTEEESSSEEECCCTTTCCHHHHHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred ceeEEcccccCCCeEeCCCCCcccHHHHHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhh-cc
Confidence 88899999999999999999999998877665655 58888866321 11 11000000 000000 01
Q ss_pred cCC---CCCceeeecCCCCCCceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChH-HHHH
Q psy4398 85 VDP---LDGSVVFRTCPREKNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPD-IACN 159 (306)
Q Consensus 85 ~~~---~~~~~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~-~~~e 159 (306)
..+ .....+.+...+.+.++++.+.+.+..+ .++.+ +.|+|.+.+|. .|.. ..+++ ++ ...+
T Consensus 136 ~~~~d~~~~~~~i~~~~~~g~~v~~~v~~~~~~e---~a~~~~~agad~i~i~~-~~~~----~~~~~-----~~~~~~~ 202 (393)
T 2qr6_A 136 AAPLDTELLSERIAQVRDSGEIVAVRVSPQNVRE---IAPIVIKAGADLLVIQG-TLIS----AEHVN-----TGGEALN 202 (393)
T ss_dssp HSCCCHHHHHHHHHHHHHTTSCCEEEECTTTHHH---HHHHHHHTTCSEEEEEC-SSCC----SSCCC-----C-----C
T ss_pred cccCCHHHHHHHHHHHhhcCCeEEEEeCCccHHH---HHHHHHHCCCCEEEEeC-Cccc----cccCC-----CcccHHH
Confidence 111 0011122223334778888887654433 33444 35999999873 2210 11221 11 1223
Q ss_pred HHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC---CCCCCCcHHHHHHHHhh-------CC-
Q psy4398 160 ILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE---RPRHRNRIEMIRTLTQH-------LK- 228 (306)
Q Consensus 160 iv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~---~~~~p~~~~~v~~i~~~-------~~- 228 (306)
+..+++.+++||.+|-- .+. +.++.+.++|+|+|.+....... ...+++.++.+.++++. ++
T Consensus 203 -i~~l~~~~~~pvi~ggi--~t~----e~a~~~~~~Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~ 275 (393)
T 2qr6_A 203 -LKEFIGSLDVPVIAGGV--NDY----TTALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGG 275 (393)
T ss_dssp -HHHHHHHCSSCEEEECC--CSH----HHHHHHHTTTCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHhcCCCEEECCc--CCH----HHHHHHHHcCCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCC
Confidence 56677778999999743 333 34777888999999993211000 11235678888877776 54
Q ss_pred --CcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 229 --IPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 229 --ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
+|||++|||++..|+.+++..| |++||+++..+
T Consensus 276 ~~ipvia~GGI~~~~dv~kalalGA~~V~iG~~~l~~~ 313 (393)
T 2qr6_A 276 RYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAE 313 (393)
T ss_dssp CCCEEEECSSCCSHHHHHHHHHHTCSEEEECGGGGGST
T ss_pred cceEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCC
Confidence 9999999999999999999875 49999976543
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-12 Score=120.14 Aligned_cols=217 Identities=18% Similarity=0.128 Sum_probs=129.7
Q ss_pred ccccc-cccccCCceEEccCCCCCCHHHHHHHHHc-CCCEEEecceechhhhhhhhh----hhcccc-c----cccc---
Q psy4398 20 ANANQ-ANINYSNKIILAPMVRMNTLPFRLLALDY-GADLVYSEELVDHKLVKTERK----VNDLLN-T----IDFV--- 85 (306)
Q Consensus 20 ~~~~~-~~l~l~n~i~lAPm~~~t~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~----~~~~l~-~----~~~~--- 85 (306)
+++++ ..+.++.||+.|||.++|+..+.....+. |.|.+- ...+++......+. +++.+. . ..+.
T Consensus 31 l~t~lt~~l~l~~PIi~a~M~~Vs~~~lA~Ava~aGGlGvi~-~~~~~e~~~~~i~~vk~~~~g~~~~P~~~~~nL~~~~ 109 (400)
T 3ffs_A 31 LETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIH-KNMDMESQVNEVLKVKNWISNLEKNESTPDQNLDKES 109 (400)
T ss_dssp CCEESSSSCEESSSEEECSCTTTCSSHHHHHHHTTTCEEEEC-SSSCHHHHHHHHHHHHCCC------------------
T ss_pred CccchhcccCCCCCEEeCCCCCcCcHHHHHHHHHCCCEEEeC-CCCCHHHHHHHHHHHHhhccCcccCCCCccccccCCC
Confidence 55666 46889999999999999999998865555 456665 45555544322211 111110 0 0000
Q ss_pred -CCCCCceeee------cCCCCCC--ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHH
Q psy4398 86 -DPLDGSVVFR------TCPREKN--KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDI 156 (306)
Q Consensus 86 -~~~~~~~~~~------~~~~~~~--p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~ 156 (306)
+....+.+.. .+++... .+.+.+...+ ...+...+++|+|.|.|+.+.. +++.
T Consensus 110 ~~~~~~~~~~~~~~~p~~~~d~~g~l~v~~~v~~~~---~e~~~~lveaGvdvIvldta~G---------------~~~~ 171 (400)
T 3ffs_A 110 TDGKDTKSNNNIDAYSNENLDNKGRLRVGAAIGVNE---IERAKLLVEAGVDVIVLDSAHG---------------HSLN 171 (400)
T ss_dssp -------------CCTTCCBCTTSSBCCEEEECCC----CHHHHHHHHHTCSEEEECCSCC---------------SBHH
T ss_pred CCHHHHHHHHHhhhCcchhhccccceeEEeecCCCH---HHHHHHHHHcCCCEEEEeCCCC---------------Cccc
Confidence 0000000000 0011111 2333333332 2233334456999999974421 3456
Q ss_pred HHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc------cCCCCCCCCCCcHHHHHHHHhh---C
Q psy4398 157 ACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG------RTKAERPRHRNRIEMIRTLTQH---L 227 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~------~~~~~~~~~p~~~~~v~~i~~~---~ 227 (306)
+.++++.+++..+.||.++.- . +.+.|+.++++|+|+|.+.. .++.....+.+.+..+.++++. +
T Consensus 172 ~~e~I~~ik~~~~i~Vi~g~V--~----t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~ 245 (400)
T 3ffs_A 172 IIRTLKEIKSKMNIDVIVGNV--V----TEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKF 245 (400)
T ss_dssp HHHHHHHHHTTCCCEEEEEEE--C----SHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCeEEEeec--C----CHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhc
Confidence 678889999888899988533 1 36778889999999999831 1111112233477778777765 5
Q ss_pred CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 228 KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 228 ~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
++|||+.|||.+.+++.++++.| |++|++++.-+
T Consensus 246 ~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t~ 282 (400)
T 3ffs_A 246 GIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTE 282 (400)
T ss_dssp TCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTBT
T ss_pred CCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcCC
Confidence 89999999999999999999875 49999998643
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.46 E-value=9.4e-13 Score=122.81 Aligned_cols=196 Identities=17% Similarity=0.137 Sum_probs=125.5
Q ss_pred cccccc-ccccCCceEEccCCCCCCHHHHHH-HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecC
Q psy4398 20 ANANQA-NINYSNKIILAPMVRMNTLPFRLL-ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97 (306)
Q Consensus 20 ~~~~~~-~l~l~n~i~lAPm~~~t~~~~r~~-~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 97 (306)
+++++. .+.++.||+.|||.++++..+... ++.+|.|++-. ..+++......+.... .
T Consensus 35 l~t~lt~~~~l~~Pii~apM~~vs~~~lA~avA~aGGlg~i~~-~~s~e~~~~~i~~vk~-------------------~ 94 (366)
T 4fo4_A 35 LRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHK-NMSIEQQAAQVHQVKI-------------------S 94 (366)
T ss_dssp CCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECS-SSCHHHHHHHHHHHHT-------------------T
T ss_pred cceecccccccCCCEEeCCCCCCChHHHHHHHHHcCCceEeec-CCCHHHHHHHHHHHHh-------------------c
Confidence 556665 688999999999999999998865 44455566543 2333322211111000 0
Q ss_pred CCCCCceEEEecCCCHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEE
Q psy4398 98 PREKNKIILQIGTADPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCK 175 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vK 175 (306)
...++.+.+ +.+++ +.+.++ .+++|+|.|.||... | +++.+.+.++.+++.. ++|+.+.
T Consensus 95 --~~l~vga~v-g~~~~-~~~~~~~lieaGvd~I~idta~----------G-----~~~~~~~~I~~ik~~~p~v~Vi~G 155 (366)
T 4fo4_A 95 --GGLRVGAAV-GAAPG-NEERVKALVEAGVDVLLIDSSH----------G-----HSEGVLQRIRETRAAYPHLEIIGG 155 (366)
T ss_dssp --TSCCCEEEC-CSCTT-CHHHHHHHHHTTCSEEEEECSC----------T-----TSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred --CceeEEEEe-ccChh-HHHHHHHHHhCCCCEEEEeCCC----------C-----CCHHHHHHHHHHHHhcCCCceEee
Confidence 011233333 22332 333344 445699999998542 1 3456677888998887 7788775
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCC-------CCCCCcHHHHHHHHh---hCCCcEEEecCCCCHHHHHH
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER-------PRHRNRIEMIRTLTQ---HLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~-------~~~p~~~~~v~~i~~---~~~ipvia~GGI~s~~~~~~ 245 (306)
.- . +.+.++.++++|+|+|.+ +...... ..+.+.+..+.++++ .+++|||+.|||.+..++.+
T Consensus 156 ~v--~----t~e~A~~a~~aGAD~I~v-G~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~k 228 (366)
T 4fo4_A 156 NV--A----TAEGARALIEAGVSAVKV-GIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISK 228 (366)
T ss_dssp EE--C----SHHHHHHHHHHTCSEEEE-CSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHH
T ss_pred ee--C----CHHHHHHHHHcCCCEEEE-ecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHH
Confidence 32 1 356778889999999999 2211110 123346667776665 56899999999999999999
Q ss_pred HHHhh---hhhccccCCCC
Q psy4398 246 VFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 246 ~l~~~---v~vGrall~~p 261 (306)
++..| +++|++++.-+
T Consensus 229 ala~GAd~V~vGs~f~~t~ 247 (366)
T 4fo4_A 229 AIAAGASCVMVGSMFAGTE 247 (366)
T ss_dssp HHHTTCSEEEESTTTTTBT
T ss_pred HHHcCCCEEEEChHhhcCC
Confidence 99875 49999998644
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=134.23 Aligned_cols=178 Identities=16% Similarity=0.023 Sum_probs=131.3
Q ss_pred ceEEEecCCCHH--H--------HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hccccc
Q psy4398 103 KIILQIGTADPE--R--------ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIP 171 (306)
Q Consensus 103 p~ivql~g~~~~--~--------~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~p 171 (306)
++-+|++|.-.+ + +..+.+.++.|+|.|.||..|- .+..+-..++..+.+++++.++.+.+. +.+-+.
T Consensus 327 ~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V~igt~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~ 405 (555)
T 1jvn_A 327 FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAV-YAAEKYYELGNRGDGTSPIETISKAYGAQAVVIS 405 (555)
T ss_dssp CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHH-HHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEE
T ss_pred CCcEEEeCccccchhcccccchHHHHHHHHHHcCCCEEEECCHHh-hCchhhccccccccCHHHHHHHHHHhCCCcEEEE
Confidence 455777665422 1 2334445567999999998872 111111112335678999999999985 345555
Q ss_pred EEEEec--------------------------------cCCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCc
Q psy4398 172 VSCKIR--------------------------------VFHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNR 216 (306)
Q Consensus 172 v~vKir--------------------------------~g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~ 216 (306)
+++|.. .||+. .+..++++.++++|++.|.+|++++++.+.++ +
T Consensus 406 iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~~~G~-d 484 (555)
T 1jvn_A 406 VDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGY-D 484 (555)
T ss_dssp ECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSCC-C
T ss_pred EEccccccccccccccccccccccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCCC-C
Confidence 666521 14543 24789999999999999999999999999886 9
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH-h---hhhhccccCCCCCchHHHHHHHHHhcCCCCCcce
Q psy4398 217 IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS-L---NCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYE 283 (306)
Q Consensus 217 ~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~-~---~v~vGrall~~p~~~~~~l~~~~~~~g~~~~~~~ 283 (306)
|++++++++.+++|||++|||.|++|+.++++ . ++++||+++.+++. -.++.+|++++|+++..|.
T Consensus 485 ~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~-~~e~~~~l~~~gi~~r~~~ 554 (555)
T 1jvn_A 485 LELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFT-VNDVKEYLLEHGLKVRMDE 554 (555)
T ss_dssp HHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCC-HHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCC-HHHHHHHHHHCCCccccCC
Confidence 99999999999999999999999999999998 3 45999999987732 3366788999998765443
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-11 Score=113.71 Aligned_cols=195 Identities=12% Similarity=0.073 Sum_probs=130.3
Q ss_pred cccccc-----ccccCCceEEccCCCCCCHHHHHHHHHcCC-CEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQA-----NINYSNKIILAPMVRMNTLPFRLLALDYGA-DLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~-----~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~-g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++. ++.++.||+.|||.+.++..+...+.+.|. |.+ ....+.+......+. +| .
T Consensus 42 l~t~l~~~~~~~~~l~~PIi~ApM~~~~~~~lA~Ava~~Gglg~i-~~~~s~e~~~~~i~~-----------~p---~-- 104 (351)
T 2c6q_A 42 LTRSFSFRNSKQTYSGVPIIAANMDTVGTFEMAKVLCKFSLFTAV-HKHYSLVQWQEFAGQ-----------NP---D-- 104 (351)
T ss_dssp CCEEEECTTTCCEEEECCEEECSSTTTSCHHHHHHHHHTTCEEEC-CTTCCHHHHHHHHHH-----------CG---G--
T ss_pred eEEEeccccCcCccccCCEEECCCCCCCcHHHHHHHHHCCCEEEE-cCCCCHHHHHHHHhh-----------Cc---h--
Confidence 777886 999999999999999999888876666663 444 333333322211111 11 0
Q ss_pred eecCCCCCCceEEEecCCCHHHHHHHHHHHhc--CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cc
Q psy4398 94 FRTCPREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SI 170 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~--g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~ 170 (306)
.+ .++.+.+ +.+++++..+...++. |++.+++++.. | ++..+.+.++++++.+ ++
T Consensus 105 --~l----~~v~~~~-g~~~~~~~~~~~l~~~~~g~~~i~i~~~~----------g-----~~~~~~~~i~~lr~~~~~~ 162 (351)
T 2c6q_A 105 --CL----EHLAASS-GTGSSDFEQLEQILEAIPQVKYICLDVAN----------G-----YSEHFVEFVKDVRKRFPQH 162 (351)
T ss_dssp --GC----TTEEEEE-CSSHHHHHHHHHHHHHCTTCCEEEEECSC----------T-----TBHHHHHHHHHHHHHCTTS
T ss_pred --hh----heeEeec-CCChHHHHHHHHHHhccCCCCEEEEEecC----------C-----CcHHHHHHHHHHHHhcCCC
Confidence 00 1355555 4556666666666665 89999997532 1 3456778899999988 78
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC--C-CC---CCCCCcHHHHHHH---HhhCCCcEEEecCCCCHH
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK--A-ER---PRHRNRIEMIRTL---TQHLKIPVIANGGSKEIV 241 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~--~-~~---~~~p~~~~~v~~i---~~~~~ipvia~GGI~s~~ 241 (306)
||.+|.- . ..+.|+.+.++|+|+|.+..... . .+ ..+.+.+..+.++ .+..++|||+.|||.+..
T Consensus 163 ~vi~g~v--~----t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~ 236 (351)
T 2c6q_A 163 TIMAGNV--V----TGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPG 236 (351)
T ss_dssp EEEEEEE--C----SHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHH
T ss_pred eEEEEeC--C----CHHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHH
Confidence 9988744 2 25677888999999998853110 0 00 0122344444444 444589999999999999
Q ss_pred HHHHHHHhh---hhhccccCC
Q psy4398 242 DYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 242 ~~~~~l~~~---v~vGrall~ 259 (306)
|+.+++..| |++||+++.
T Consensus 237 di~kAlalGA~~V~vG~~fl~ 257 (351)
T 2c6q_A 237 DVAKAFGAGADFVMLGGMLAG 257 (351)
T ss_dssp HHHHHHHTTCSEEEESTTTTT
T ss_pred HHHHHHHcCCCceeccHHHhc
Confidence 999999986 499999985
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-12 Score=112.02 Aligned_cols=147 Identities=17% Similarity=0.220 Sum_probs=114.9
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE-------
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV------- 172 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv------- 172 (306)
.+.|+++..+-.++++.. ..++.|+|.|-++ ..++.+|+.+.++++.+.+.+.+.+
T Consensus 73 ~~ipv~v~ggi~~~~~~~---~~l~~Gad~V~lg--------------~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~ 135 (244)
T 2y88_A 73 LDVQVELSGGIRDDESLA---AALATGCARVNVG--------------TAALENPQWCARVIGEHGDQVAVGLDVQIIDG 135 (244)
T ss_dssp CSSEEEEESSCCSHHHHH---HHHHTTCSEEEEC--------------HHHHHCHHHHHHHHHHHGGGEEEEEEEEEETT
T ss_pred cCCcEEEECCCCCHHHHH---HHHHcCCCEEEEC--------------chHhhChHHHHHHHHHcCCCEEEEEeccccCC
Confidence 356888776667776533 3334699999884 3456788889999988865443333
Q ss_pred --EEEeccCCCh--HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 173 --SCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 173 --~vKir~g~~~--~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
.||++ ||.. .+..++++.+++.|++.|.+|++++++.+.++ +++.++++++.+++|||++|||++++++.++++
T Consensus 136 ~~~v~~~-g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~-~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~ 213 (244)
T 2y88_A 136 EHRLRGR-GWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGP-NLDLLAGVADRTDAPVIASGGVSSLDDLRAIAT 213 (244)
T ss_dssp EEEEEEG-GGTEEEEEHHHHHHHHHHTTCCCEEEEETTTTTTTSCC-CHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHT
T ss_pred CCEEEEC-CccCCCCCHHHHHHHHHhCCCCEEEEEecCCccccCCC-CHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHh
Confidence 45566 5532 25789999999999999999999988777765 999999999999999999999999999999998
Q ss_pred h---hh---hhccccCCCCCchH
Q psy4398 249 L---NC---AFLRNHYPVEKLPK 265 (306)
Q Consensus 249 ~---~v---~vGrall~~p~~~~ 265 (306)
. ++ ++||+++.+|....
T Consensus 214 ~~~~Gad~v~vG~al~~~~~~~~ 236 (244)
T 2y88_A 214 LTHRGVEGAIVGKALYARRFTLP 236 (244)
T ss_dssp TGGGTEEEEEECHHHHTTSSCHH
T ss_pred hccCCCCEEEEcHHHHCCCcCHH
Confidence 7 65 99999999995543
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6e-11 Score=105.04 Aligned_cols=160 Identities=19% Similarity=0.141 Sum_probs=119.4
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEE---
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCK--- 175 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vK--- 175 (306)
.+.|+++.-+-.++++..+ .++.|+|+|-++ .....+|+.+.++++.+.. .+.+.++++
T Consensus 73 ~~ipvi~~ggI~~~~~~~~---~~~~Gad~V~lg--------------~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~ 135 (253)
T 1thf_D 73 IDIPFTVGGGIHDFETASE---LILRGADKVSIN--------------TAAVENPSLITQIAQTFGSQAVVVAIDAKRVD 135 (253)
T ss_dssp CCSCEEEESSCCSHHHHHH---HHHTTCSEEEES--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEET
T ss_pred CCCCEEEeCCCCCHHHHHH---HHHcCCCEEEEC--------------hHHHhChHHHHHHHHHcCCCcEEEEEEEEccC
Confidence 3568887755566765333 334699999773 4455678888888888743 333444443
Q ss_pred ------eccCCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q psy4398 176 ------IRVFHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV 246 (306)
Q Consensus 176 ------ir~g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~ 246 (306)
+. +|.. .+..++++.+++.|++.|.+|++.+++...++ +++.++++++.+++|||++|||++++++.++
T Consensus 136 g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~-~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~ 213 (253)
T 1thf_D 136 GEFMVFTY-SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY-DTEMIRFVRPLTTLPIIASGGAGKMEHFLEA 213 (253)
T ss_dssp TEEEEEET-TTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCC-CHHHHHHHGGGCCSCEEEESCCCSHHHHHHH
T ss_pred CcEEEEEC-CCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCCCC-CHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 32 3432 24788999999999999999988887777765 8999999999999999999999999999999
Q ss_pred HHhh---hhhccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 247 FSLN---CAFLRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 247 l~~~---v~vGrall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
++.| +++|++++.+|...+ +..+++++.|+++
T Consensus 214 ~~~Gadgv~vGsal~~~~~~~~-~~~~~l~~~g~~~ 248 (253)
T 1thf_D 214 FLAGADAALAASVFHFREIDVR-ELKEYLKKHGVNV 248 (253)
T ss_dssp HHTTCSEEEESHHHHTTCSCHH-HHHHHHHHTTCCC
T ss_pred HHcCChHHHHHHHHHcCCCCHH-HHHHHHHHcCCcc
Confidence 9875 499999998884332 4456678888764
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-11 Score=106.24 Aligned_cols=146 Identities=16% Similarity=0.210 Sum_probs=107.5
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe---
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI--- 176 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi--- 176 (306)
.+.|+++..+-.++++.. ..++.|+|.|-++ .....+|+.+.++++.+...+.+.++++.
T Consensus 74 ~~ipv~v~ggI~~~~~~~---~~l~~Gad~V~lg--------------~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v 136 (244)
T 1vzw_A 74 MDIKVELSGGIRDDDTLA---AALATGCTRVNLG--------------TAALETPEWVAKVIAEHGDKIAVGLDVRGTTL 136 (244)
T ss_dssp CSSEEEEESSCCSHHHHH---HHHHTTCSEEEEC--------------HHHHHCHHHHHHHHHHHGGGEEEEEEEETTEE
T ss_pred cCCcEEEECCcCCHHHHH---HHHHcCCCEEEEC--------------chHhhCHHHHHHHHHHcCCcEEEEEEccCCEE
Confidence 356888776667776533 3344699999884 34556788888888887655555565541
Q ss_pred -ccCCChH--HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---h
Q psy4398 177 -RVFHNEA--DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---N 250 (306)
Q Consensus 177 -r~g~~~~--~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~ 250 (306)
..||... +..++++.+++.|++.|.+|++.+++.+.++ +++.++++++.+++|||++|||++++++.++++. |
T Consensus 137 ~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~-~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~G 215 (244)
T 1vzw_A 137 RGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGP-NLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAG 215 (244)
T ss_dssp CCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CC-CHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGT
T ss_pred EEcCcccCCCCHHHHHHHHHhCCCCEEEEeccCcccccCCC-CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCC
Confidence 1245321 5788899999999999999998877766664 8999999999999999999999999999999987 6
Q ss_pred h---hhccccCCCCCc
Q psy4398 251 C---AFLRNHYPVEKL 263 (306)
Q Consensus 251 v---~vGrall~~p~~ 263 (306)
+ ++||+++.+|+.
T Consensus 216 adgv~vG~al~~~~~~ 231 (244)
T 1vzw_A 216 VEGAIVGKALYAKAFT 231 (244)
T ss_dssp EEEEEECHHHHTTSSC
T ss_pred CceeeeeHHHHcCCCC
Confidence 5 999999998844
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-11 Score=104.63 Aligned_cols=160 Identities=12% Similarity=0.103 Sum_probs=118.1
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEE----
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSC---- 174 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~v---- 174 (306)
.+.|+++.=+-.++++..++ ++.|+|+|-+ |..+..+|+.+.++.+.+.. .+-..+++
T Consensus 74 ~~iPvi~~Ggi~~~~~~~~~---~~~Gad~V~l--------------g~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (252)
T 1ka9_F 74 VFIPLTVGGGVRSLEDARKL---LLSGADKVSV--------------NSAAVRRPELIRELADHFGAQAVVLAIDARWRG 136 (252)
T ss_dssp CCSCEEEESSCCSHHHHHHH---HHHTCSEEEE--------------CHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEET
T ss_pred CCCCEEEECCcCCHHHHHHH---HHcCCCEEEE--------------ChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCC
Confidence 45688776444555543333 3359999988 44556778888888888742 22233443
Q ss_pred -----EeccCCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q psy4398 175 -----KIRVFHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV 246 (306)
Q Consensus 175 -----Kir~g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~ 246 (306)
++. ||.. .+..+.++.+++.|++.|.+|++.+++.+.++ +++.++++++.+++|||++|||++++++.++
T Consensus 137 g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~-~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~ 214 (252)
T 1ka9_F 137 DFPEVHVA-GGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGY-DLRLTRMVAEAVGVPVIASGGAGRMEHFLEA 214 (252)
T ss_dssp TEEEEEET-TTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCC-CHHHHHHHHHHCSSCEEEESCCCSHHHHHHH
T ss_pred CCEEEEEC-CCccccCCcHHHHHHHHHHcCCCEEEEecccCCCCcCCC-CHHHHHHHHHHcCCCEEEeCCCCCHHHHHHH
Confidence 332 4533 34788999999999999999988777777665 8999999999999999999999999999999
Q ss_pred HHh---hhhhccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 247 FSL---NCAFLRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 247 l~~---~v~vGrall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
++. ++++|++++.+|...+ ++.+++++.|+++
T Consensus 215 ~~~Gadgv~vgsal~~~~~~~~-~~~~~l~~~~~~~ 249 (252)
T 1ka9_F 215 FQAGAEAALAASVFHFGEIPIP-KLKRYLAEKGVHV 249 (252)
T ss_dssp HHTTCSEEEESHHHHTTSSCHH-HHHHHHHHTTCCB
T ss_pred HHCCCHHHHHHHHHHcCCCCHH-HHHHHHHHCCCCc
Confidence 986 4599999998874433 3456788888764
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-11 Score=115.52 Aligned_cols=127 Identities=16% Similarity=0.079 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~ 190 (306)
..+.+..+...+++|+|.|+||.+||+ .+.+.++++++++.. +.||.++-- . ..+.++
T Consensus 229 ~~d~~~~a~~l~~aG~d~I~id~a~g~---------------~~~~~~~i~~ir~~~p~~~Vi~g~v--~----t~e~a~ 287 (496)
T 4fxs_A 229 APGNEERVKALVEAGVDVLLIDSSHGH---------------SEGVLQRIRETRAAYPHLEIIGGNV--A----TAEGAR 287 (496)
T ss_dssp SSCCHHHHHHHHHTTCSEEEEECSCTT---------------SHHHHHHHHHHHHHCTTCCEEEEEE--C----SHHHHH
T ss_pred ccchHHHHHHHHhccCceEEecccccc---------------chHHHHHHHHHHHHCCCceEEEccc--C----cHHHHH
Confidence 334455555555679999999998864 345678899999887 789888533 1 246678
Q ss_pred HHHHcCCcEEEEcccC------CCCCCCCCCcHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhh---hhhccccC
Q psy4398 191 RLEACGIIAIGVHGRT------KAERPRHRNRIEMIRTLTQHL---KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHY 258 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~------~~~~~~~p~~~~~v~~i~~~~---~ipvia~GGI~s~~~~~~~l~~~---v~vGrall 258 (306)
.+.++|+|+|.+.... +.....+.+.+..+.++++.+ ++|||+.|||.+..|+.++++.| +++||++.
T Consensus 288 ~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~ 367 (496)
T 4fxs_A 288 ALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFA 367 (496)
T ss_dssp HHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTT
T ss_pred HHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHh
Confidence 8899999999985321 110112334777777777644 79999999999999999999875 49999987
Q ss_pred C
Q psy4398 259 P 259 (306)
Q Consensus 259 ~ 259 (306)
.
T Consensus 368 ~ 368 (496)
T 4fxs_A 368 G 368 (496)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-11 Score=105.92 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=119.0
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cc----cc-----
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NL----SI----- 170 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~----~~----- 170 (306)
+.|+++.-.-.+++++.+ .++.|+|+|.++. .+..+++.+.++.+.... .+ +.
T Consensus 77 ~ipvi~~g~i~~~~~~~~---~~~~Gad~V~i~~--------------~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g 139 (253)
T 1h5y_A 77 SIPVLVGGGVRSLEDATT---LFRAGADKVSVNT--------------AAVRNPQLVALLAREFGSQSTVVAIDAKWNGE 139 (253)
T ss_dssp SSCEEEESSCCSHHHHHH---HHHHTCSEEEESH--------------HHHHCTHHHHHHHHHHCGGGEEEEEEEEECSS
T ss_pred CCCEEEECCCCCHHHHHH---HHHcCCCEEEECh--------------HHhhCcHHHHHHHHHcCCCcEEEEEEeecCCC
Confidence 468887766667765433 2335999999962 234567777777777642 22 11
Q ss_pred cEEEEeccCCC--hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 171 PVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 171 pv~vKir~g~~--~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
++.|+++.++. ..+..++++.+.+.|+|.|.++++...+...++ +++.++++++.+++||+++|||++.+++.++++
T Consensus 140 ~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~-~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~ 218 (253)
T 1h5y_A 140 YYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGY-DVELIRRVADSVRIPVIASGGAGRVEHFYEAAA 218 (253)
T ss_dssp SEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCC-CHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH
T ss_pred cEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCCcCcC-CHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH
Confidence 14666665432 134778899999999999999988876665554 899999999999999999999999999999988
Q ss_pred hh---hhhccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 249 LN---CAFLRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 249 ~~---v~vGrall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
.| +++|++++.++.. ..++.+||+++||++
T Consensus 219 ~Ga~~v~vgsal~~~~~~-~~~~~~~l~~~g~~~ 251 (253)
T 1h5y_A 219 AGADAVLAASLFHFRVLS-IAQVKRYLKERGVEV 251 (253)
T ss_dssp TTCSEEEESHHHHTTSSC-HHHHHHHHHHTTCBC
T ss_pred cCCcHHHHHHHHHcCCCC-HHHHHHHHHHcCCCC
Confidence 64 5999999987622 347788999999864
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-11 Score=107.65 Aligned_cols=163 Identities=15% Similarity=0.031 Sum_probs=99.6
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCcccccc-C--ChHHHHHHHHHHH---hcccccEE
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL-S--TPDIACNILTTLI---SNLSIPVS 173 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~-~--~~~~~~eiv~~v~---~~~~~pv~ 173 (306)
.+.|+++.=+-.+++++.++. +.|+|+|-+. ..+. . +++.+.++++... +.+-..++
T Consensus 73 ~~iPvi~~ggi~~~~~i~~~~---~~Gad~v~lg--------------~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d 135 (266)
T 2w6r_A 73 TTLPIIASGGAGKMEHFLEAF---LAGADKALAA--------------SVFHFREIDMRELKEYLKKHGGSGQAVVVAID 135 (266)
T ss_dssp CCSCEEEESCCCSTHHHHHHH---HHTCSEEECC--------------CCC------CHHHHHHCC----CCCEEEEEEE
T ss_pred cCCCEEEECCCCCHHHHHHHH---HcCCcHhhhh--------------HHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEE
Confidence 357888764435566654333 3599998883 2333 3 6777777776654 23222333
Q ss_pred ---------EEeccCCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHH
Q psy4398 174 ---------CKIRVFHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241 (306)
Q Consensus 174 ---------vKir~g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~ 241 (306)
|+++ +|.. .+..++++.+++.|++.|.++++.+++.+.++ +++.++++++.+++|||++|||++++
T Consensus 136 ~~~~~g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~ipvia~GGI~~~e 213 (266)
T 2w6r_A 136 AKRVDGEFMVFTH-SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY-DTEMIRFVRPLTTLPIIASGGAGKME 213 (266)
T ss_dssp EEEETTEEEEEET-TTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTTCSCC-CHHHHHHHGGGCCSCEEEESCCCSHH
T ss_pred EEecCCCEEEEEC-CCceecchhHHHHHHHHHHcCCCEEEEEeecCCCCcCCC-CHHHHHHHHHHcCCCEEEeCCCCCHH
Confidence 3333 3432 24688899999999999999988887777665 89999999999999999999999999
Q ss_pred HHHHHHHhh---hhhccccCCCCCchHHHHHHHHHhcCCCCCcc
Q psy4398 242 DYGGVFSLN---CAFLRNHYPVEKLPKTILYAHCKYKRFEVPKY 282 (306)
Q Consensus 242 ~~~~~l~~~---v~vGrall~~p~~~~~~l~~~~~~~g~~~~~~ 282 (306)
++.++++.+ +++|++++.+|.. ..++.+|++++|+++..|
T Consensus 214 d~~~~~~~Gadgv~vgsal~~~~~~-~~~~~~~l~~~g~~~~~~ 256 (266)
T 2w6r_A 214 HFLEAFLAGADAALAASVFHFREID-MRELKEYLKKHGVNVRLE 256 (266)
T ss_dssp HHHHHHHHTCSEEEESTTTC------------------------
T ss_pred HHHHHHHcCCHHHHccHHHHcCCCC-HHHHHHHHHHCCCccccc
Confidence 999999864 5999999988733 226678899999875543
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-10 Score=112.27 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a 189 (306)
.+.+.+..+...+++|+|.|+||.+|++ ...+.++++++++.. +.|+.++-- . ..+.+
T Consensus 226 ~~~~~~~~a~~l~~aG~d~I~id~a~g~---------------~~~~~~~v~~i~~~~p~~~Vi~g~v--~----t~e~a 284 (490)
T 4avf_A 226 TGADTGERVAALVAAGVDVVVVDTAHGH---------------SKGVIERVRWVKQTFPDVQVIGGNI--A----TAEAA 284 (490)
T ss_dssp SSTTHHHHHHHHHHTTCSEEEEECSCCS---------------BHHHHHHHHHHHHHCTTSEEEEEEE--C----SHHHH
T ss_pred cccchHHHHHHHhhcccceEEecccCCc---------------chhHHHHHHHHHHHCCCceEEEeee--C----cHHHH
Confidence 3344555555556679999999988764 345678899999887 788888632 1 34668
Q ss_pred HHHHHcCCcEEEEccc------CCCCCCCCCCcHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhhh---hhcccc
Q psy4398 190 KRLEACGIIAIGVHGR------TKAERPRHRNRIEMIRTLTQHL---KIPVIANGGSKEIVDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~------~~~~~~~~p~~~~~v~~i~~~~---~ipvia~GGI~s~~~~~~~l~~~v---~vGral 257 (306)
+.+.++|+|+|.+... ++.....+.+.+..+.++++.+ ++|||+.|||.+.+|+.++++.|+ ++|+++
T Consensus 285 ~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~ 364 (490)
T 4avf_A 285 KALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMF 364 (490)
T ss_dssp HHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTT
T ss_pred HHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHH
Confidence 8899999999998321 1111122345788888888754 799999999999999999998754 999998
Q ss_pred CC
Q psy4398 258 YP 259 (306)
Q Consensus 258 l~ 259 (306)
..
T Consensus 365 ~~ 366 (490)
T 4avf_A 365 AG 366 (490)
T ss_dssp TT
T ss_pred hc
Confidence 75
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.3e-11 Score=105.39 Aligned_cols=146 Identities=13% Similarity=0.093 Sum_probs=106.1
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe---c
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI---R 177 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi---r 177 (306)
+.|+++.=+-.++++.. +.++.|+|+|-+ |..+..+|+.+.++ +.+.+.+-+.+++|. .
T Consensus 73 ~ipvi~~Ggi~~~~~~~---~~~~~Gad~V~l--------------g~~~l~~p~~~~~~-~~~g~~i~~~~d~~~~~v~ 134 (241)
T 1qo2_A 73 AEHIQIGGGIRSLDYAE---KLRKLGYRRQIV--------------SSKVLEDPSFLKSL-REIDVEPVFSLDTRGGRVA 134 (241)
T ss_dssp GGGEEEESSCCSHHHHH---HHHHTTCCEEEE--------------CHHHHHCTTHHHHH-HTTTCEEEEEEEEETTEEC
T ss_pred CCcEEEECCCCCHHHHH---HHHHCCCCEEEE--------------CchHhhChHHHHHH-HHcCCcEEEEEEecCCEEE
Confidence 45666543334554443 333469999966 45566788887777 666533333344431 1
Q ss_pred -cCCChH---HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----
Q psy4398 178 -VFHNEA---DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---- 249 (306)
Q Consensus 178 -~g~~~~---~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---- 249 (306)
.||... +..++++.+++.|++.|.+|++.+++.+.++ +++.++++++.+++|||++|||.+++++.++++.
T Consensus 135 ~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~ 213 (241)
T 1qo2_A 135 FKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTET 213 (241)
T ss_dssp CTTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHT
T ss_pred ECCceecCCCCHHHHHHHHHhCCCCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhccccc
Confidence 145422 4788999999999999999998776666665 8999999999999999999999999999999876
Q ss_pred -h----hhhccccCCCCCchH
Q psy4398 250 -N----CAFLRNHYPVEKLPK 265 (306)
Q Consensus 250 -~----v~vGrall~~p~~~~ 265 (306)
+ +++||+++.++...+
T Consensus 214 ~G~adgv~vgsal~~~~~~~~ 234 (241)
T 1qo2_A 214 NGLLKGVIVGRAFLEGILTVE 234 (241)
T ss_dssp TTSEEEEEECHHHHTTSSCHH
T ss_pred CCeEeEEEeeHHHHcCCCCHH
Confidence 5 499999998884443
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-10 Score=100.00 Aligned_cols=202 Identities=12% Similarity=0.057 Sum_probs=124.7
Q ss_pred cccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh-hhhhhcccccccccCCCCCceeeecCCC
Q psy4398 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT-ERKVNDLLNTIDFVDPLDGSVVFRTCPR 99 (306)
Q Consensus 21 ~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 99 (306)
+++++|++|+||+++++....+...+.....++|+.++-... ++... ...... +++.+++
T Consensus 3 ~~~i~~~~~~~~~~~~t~g~p~~~~~~~~l~~~Gad~ielg~----pr~~~~g~~~~~---------------~~~~l~~ 63 (264)
T 1xm3_A 3 MLTIGGKSFQSRLLLGTGKYPSFDIQKEAVAVSESDILTFAV----RRMNIFEASQPN---------------FLEQLDL 63 (264)
T ss_dssp CEEETTEEESCCEEEECSCSSCHHHHHHHHHHHTCSEEEEET----TSSTTC----------------------CTTCCG
T ss_pred CeEECCEEecCCCEEEecCCCCHHHHHHHHHHcCCeEEEEcc----cccccCCCCHHH---------------HHHHHHh
Confidence 568999999999999999977666666555577988874332 11100 000111 1222322
Q ss_pred CCCceEEEecC-CCHHHHHHHHHHHhc--CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEE
Q psy4398 100 EKNKIILQIGT-ADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSC 174 (306)
Q Consensus 100 ~~~p~ivql~g-~~~~~~~~aa~~~~~--g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~v 174 (306)
...+++.|..+ .++++....++.+++ +.+.|.+++-. . .. .. .+...++++++++.+ ++.+..
T Consensus 64 ~~~~~~pn~~~~~~~~~~~~f~~~a~~agg~~~i~l~i~~-d------~~--~~---~~e~~~~~~~a~~~~~~g~~vi~ 131 (264)
T 1xm3_A 64 SKYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIG-C------SR--SL---LPDPVETLKASEQLLEEGFIVLP 131 (264)
T ss_dssp GGSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBC-C------TT--TC---CBCHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCeEcCCccccCCHHHHHHHHHHHHHcCCCCeEEEeecC-C------Cc--cc---ccchHHHHHHHHHHHCCCeEEEE
Confidence 34567778765 778876666676654 56777776522 1 00 00 122345566665543 333332
Q ss_pred EeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---h
Q psy4398 175 KIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---C 251 (306)
Q Consensus 175 Kir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v 251 (306)
-.. ++. +.++.+++.|+|+|...+.... ...+...++.++++++..++||++.|||.+++++.++++.| +
T Consensus 132 ~~~--~~~----~~a~~~~~~gad~v~~~~~~~G-t~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgV 204 (264)
T 1xm3_A 132 YTS--DDV----VLARKLEELGVHAIMPGASPIG-SGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGV 204 (264)
T ss_dssp EEC--SCH----HHHHHHHHHTCSCBEECSSSTT-CCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEE
T ss_pred EcC--CCH----HHHHHHHHhCCCEEEECCcccC-CCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 222 332 3577788899999944232211 11122347888999998899999999999999999999875 5
Q ss_pred hhccccCCC
Q psy4398 252 AFLRNHYPV 260 (306)
Q Consensus 252 ~vGrall~~ 260 (306)
++|++++..
T Consensus 205 iVGSAi~~a 213 (264)
T 1xm3_A 205 LLNTAVSGA 213 (264)
T ss_dssp EESHHHHTS
T ss_pred EEcHHHhCC
Confidence 999999853
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6e-10 Score=99.82 Aligned_cols=200 Identities=13% Similarity=0.129 Sum_probs=126.6
Q ss_pred ccCCceEEccCCCCCCHH-HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEE
Q psy4398 28 NYSNKIILAPMVRMNTLP-FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIIL 106 (306)
Q Consensus 28 ~l~n~i~lAPm~~~t~~~-~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~iv 106 (306)
-+.+++.++||.+..+.. ....+.++|+..+++.. ..... . . +.. ....|+++
T Consensus 31 ~id~~~~l~p~~~~~~~~~~~~~~~~~g~~~i~~~~----~~~~~------~-----------~----~~~-~~~~~~~v 84 (273)
T 2qjg_A 31 PMDHGVSNGPIKGLIDIRKTVNDVAEGGANAVLLHK----GIVRH------G-----------H----RGY-GKDVGLII 84 (273)
T ss_dssp ECCHHHHHCSCTTSSSHHHHHHHHHHHTCSEEEECH----HHHHS------C-----------C----CSS-SCCCEEEE
T ss_pred EcccccccCCCcchhhHHHHHHHHHhcCCCEEEeCH----HHHHH------H-----------H----Hhh-cCCCCEEE
Confidence 357788899998888875 44445688998887642 11100 0 0 000 12357888
Q ss_pred EecCCC-----H--HHHHHHHH-HHhcCCCEE--EEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 107 QIGTAD-----P--ERALEAAK-KVEHDVAAI--DINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 107 ql~g~~-----~--~~~~~aa~-~~~~g~d~v--eln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
|+.+.. + +.+.+.++ .++.|+|.| .+|.+|+.. . ...+.+.++++..++ .+.|+.+.+
T Consensus 85 ~~~~~~~~~~d~~~~~~~~~v~~a~~~Ga~~v~~~l~~~~~~~--------~---~~~~~~~~v~~~~~~-~g~~viv~~ 152 (273)
T 2qjg_A 85 HLSGGTAISPNPLKKVIVTTVEEAIRMGADAVSIHVNVGSDED--------W---EAYRDLGMIAETCEY-WGMPLIAMM 152 (273)
T ss_dssp ECEECCTTSSSTTCCEECSCHHHHHHTTCSEEEEEEEETSTTH--------H---HHHHHHHHHHHHHHH-HTCCEEEEE
T ss_pred EEcCCCcCCCCcccchHHHHHHHHHHcCCCEEEEEEecCCCCH--------H---HHHHHHHHHHHHHHH-cCCCEEEEe
Confidence 887554 1 11122333 345699999 777777531 0 112344555555543 478888876
Q ss_pred cc-------CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC--HHHHHH--
Q psy4398 177 RV-------FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE--IVDYGG-- 245 (306)
Q Consensus 177 r~-------g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s--~~~~~~-- 245 (306)
.. +.+.++..++++.+++.|+|+|.++. +.+++.++++++.+++||++.|||++ .+++.+
T Consensus 153 ~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~---------~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~ 223 (273)
T 2qjg_A 153 YPRGKHIQNERDPELVAHAARLGAELGADIVKTSY---------TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMI 223 (273)
T ss_dssp EECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECC---------CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHH
T ss_pred CCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECC---------CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHH
Confidence 21 23445566777999999999999872 35789999999999999999999994 777444
Q ss_pred --HHHh---hhhhccccCCCCCchHH--HHHHHHHh
Q psy4398 246 --VFSL---NCAFLRNHYPVEKLPKT--ILYAHCKY 274 (306)
Q Consensus 246 --~l~~---~v~vGrall~~p~~~~~--~l~~~~~~ 274 (306)
+++. ++.+||+++..|+..+. .+.+.+.+
T Consensus 224 ~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l~~~~~~ 259 (273)
T 2qjg_A 224 KDAMEAGAAGVAVGRNIFQHDDVVGITRAVCKIVHE 259 (273)
T ss_dssp HHHHHHTCSEEECCHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEeeHHhhCCCCHHHHHHHHHHHHhc
Confidence 4444 45999999887643322 45444443
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.3e-10 Score=99.35 Aligned_cols=143 Identities=12% Similarity=0.155 Sum_probs=106.5
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccEEEEecc---
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCKIRV--- 178 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vKir~--- 178 (306)
++-+|++|.- ....++.+.+..|+|.|-+| +...++|+++.++.+.+- +.+...+.+|...
T Consensus 75 ~~pl~vGGGI-rs~e~~~~~l~~GadkVii~--------------t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~ 139 (243)
T 4gj1_A 75 SVNLQVGGGI-RSKEEVKALLDCGVKRVVIG--------------SMAIKDATLCLEILKEFGSEAIVLALDTILKEDYV 139 (243)
T ss_dssp CSEEEEESSC-CCHHHHHHHHHTTCSEEEEC--------------TTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEE
T ss_pred CCCeEecccc-ccHHHHHHHHHcCCCEEEEc--------------cccccCCchHHHHHhcccCceEEEEEEEEeCCCCE
Confidence 4557886542 23455556677899999996 455689999999999985 4345566665442
Q ss_pred ----CCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh-
Q psy4398 179 ----FHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL- 249 (306)
Q Consensus 179 ----g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~- 249 (306)
+|.. .+..++++.+++.|+..+.+++..+++...++ ++++++.+++.+ ++|||++||+.+.+|.+++.+.
T Consensus 140 v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~-d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l~~~~ 218 (243)
T 4gj1_A 140 VAVNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQGV-NVRLYKLIHEIFPNICIQASGGVASLKDLENLKGIC 218 (243)
T ss_dssp EC--------CCBHHHHHHHHHTTTCCEEEEEETTC-----CC-CHHHHHHHHHHCTTSEEEEESCCCSHHHHHHTTTTC
T ss_pred EEecCceecccchHHHHHHHHhhcCCcEEEeeeecccccccCC-CHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHHHccC
Confidence 3432 23789999999999999999999999999986 999999999987 7999999999999999886432
Q ss_pred -hhhhccccCCCC
Q psy4398 250 -NCAFLRNHYPVE 261 (306)
Q Consensus 250 -~v~vGrall~~p 261 (306)
++.+|+|+|.+-
T Consensus 219 ~gvivg~Al~~g~ 231 (243)
T 4gj1_A 219 SGVIVGKALLDGV 231 (243)
T ss_dssp SEEEECHHHHTTS
T ss_pred chhehHHHHHCCC
Confidence 569999999876
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.9e-10 Score=109.33 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHH
Q psy4398 113 PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKR 191 (306)
Q Consensus 113 ~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~ 191 (306)
++.+..+...++.|+|.|+||.+|. +++...++++++++.+ ++||.+|-- ...+.|+.
T Consensus 254 ~~~~~~a~~~~~aG~d~v~i~~~~G---------------~~~~~~~~i~~i~~~~~~~pvi~~~v------~t~~~a~~ 312 (514)
T 1jcn_A 254 EDDKYRLDLLTQAGVDVIVLDSSQG---------------NSVYQIAMVHYIKQKYPHLQVIGGNV------VTAAQAKN 312 (514)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCC---------------CSHHHHHHHHHHHHHCTTCEEEEEEE------CSHHHHHH
T ss_pred hhhHHHHHHHHHcCCCEEEeeccCC---------------cchhHHHHHHHHHHhCCCCceEeccc------chHHHHHH
Confidence 3344444444456999999998762 2356778999999988 889988622 13567899
Q ss_pred HHHcCCcEEEEcc---c---CCCCCCCC---CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 192 LEACGIIAIGVHG---R---TKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 192 l~~~G~d~i~v~~---~---~~~~~~~~---p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
+.++|+|+|.+.. . ++.....+ +..+..++++++.+++|||+.|||++..++.+++..|+ ++||+++.
T Consensus 313 l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~ 392 (514)
T 1jcn_A 313 LIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAA 392 (514)
T ss_dssp HHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred HHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHc
Confidence 9999999999831 1 11111111 23578889999999999999999999999999999864 99999998
Q ss_pred CCCch
Q psy4398 260 VEKLP 264 (306)
Q Consensus 260 ~p~~~ 264 (306)
.|+.+
T Consensus 393 ~~e~~ 397 (514)
T 1jcn_A 393 TTEAP 397 (514)
T ss_dssp STTSS
T ss_pred CCcCC
Confidence 87443
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-09 Score=96.07 Aligned_cols=142 Identities=21% Similarity=0.298 Sum_probs=104.5
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
-+|..+ .+ .+-|+.+++ |+.+|...-+||..... . -|.+-+++|+. |+++++++.+||+.|.+.|.
T Consensus 13 ~vimdv--~~----~eqa~iae~aGa~av~~l~~~p~d~r~-~-gGv~Rm~dp~~----I~~I~~aVsIPVm~k~righ- 79 (291)
T 3o07_A 13 GVIMDV--VT----PEQAKIAEKSGACAVMALESIPADMRK-S-GKVCRMSDPKM----IKDIMNSVSIPVMAKVRIGH- 79 (291)
T ss_dssp CEEEEE--SS----HHHHHHHHHHTCSEEEECSSCHHHHHT-T-TCCCCCCCHHH----HHHHHTTCSSCEEEEEETTC-
T ss_pred Ceeeec--CC----HHHHHHHHHhCchhhhhccCCCchhhh-c-CCccccCCHHH----HHHHHHhCCCCeEEEEecCc-
Confidence 366666 22 344566654 99999999999986542 2 25567788886 45567888999999999754
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccC-----------------------------------------CCC-----------
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRT-----------------------------------------KAE----------- 209 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~-----------------------------------------~~~----------- 209 (306)
..-|+.++++|+|+|.-+... ...
T Consensus 80 ----~~EAqilea~GaD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~ 155 (291)
T 3o07_A 80 ----FVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVK 155 (291)
T ss_dssp ----HHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHH
T ss_pred ----HHHHHHHHHcCCCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHH
Confidence 566788888999998743210 000
Q ss_pred -------------CC-----------CCCCcHHHHHHHHhhCCCcE--EEecCCCCHHHHHHHHHh---hhhhccccCCC
Q psy4398 210 -------------RP-----------RHRNRIEMIRTLTQHLKIPV--IANGGSKEIVDYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 210 -------------~~-----------~~p~~~~~v~~i~~~~~ipv--ia~GGI~s~~~~~~~l~~---~v~vGrall~~ 260 (306)
.+ ...++|++++++++..++|| |++|||.|++++..+++. ++++||+++..
T Consensus 156 h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s 235 (291)
T 3o07_A 156 HIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKS 235 (291)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGS
T ss_pred HHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCC
Confidence 02 01357999999999999998 569999999999999986 45999999874
Q ss_pred C
Q psy4398 261 E 261 (306)
Q Consensus 261 p 261 (306)
+
T Consensus 236 ~ 236 (291)
T 3o07_A 236 S 236 (291)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.09 E-value=9e-10 Score=99.92 Aligned_cols=138 Identities=22% Similarity=0.257 Sum_probs=94.2
Q ss_pred HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChH------------
Q psy4398 117 LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEA------------ 183 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~------------ 183 (306)
.+.|+.+++ |+++|... ||.+...+...|.+.+++|+.+.++. +++.+||..|.+.||..+
T Consensus 27 ~e~A~~ae~aGA~aI~~l--~~v~~d~~~~~G~arm~~p~~i~~I~----~av~iPV~~K~rig~~~e~qilea~GaD~I 100 (330)
T 2yzr_A 27 VEQAQIAEEAGAVAVMAL--ERVPADIRAAGGVARMSDPALIEEIM----DAVSIPVMAKCRIGHTTEALVLEAIGVDMI 100 (330)
T ss_dssp HHHHHHHHHHTCSEEEEC--SSCHHHHC--CCCCCCCCHHHHHHHH----HHCSSCEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHcCCCEEEec--CCccccccCCcchhhcCCHHHHHHHH----HhcCCCeEEEEeecchHHHHHHHHcCCCEE
Confidence 556776765 99999443 27776677777888999999877775 467899999999877200
Q ss_pred -----------------------------HHHHHHHHHHHcCCcEEEEcc--------------cC------------CC
Q psy4398 184 -----------------------------DTIALCKRLEACGIIAIGVHG--------------RT------------KA 208 (306)
Q Consensus 184 -----------------------------~~~~~a~~l~~~G~d~i~v~~--------------~~------------~~ 208 (306)
+..+.++++ +.|++.|..|+ |+ .+
T Consensus 101 d~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~-~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~~~~~~~s~~~~~ 179 (330)
T 2yzr_A 101 DESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRI-WEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDE 179 (330)
T ss_dssp EEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHH-HHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred ehhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHH-hcCcceeeccCCCCcccchhHHHHHHHHHHHHHHhccCCHH
Confidence 133444444 45555555555 21 00
Q ss_pred C----------CC----------CC---------------------CCcHHHHHHHHhhCCCcE--EEecCCCCHHHHHH
Q psy4398 209 E----------RP----------RH---------------------RNRIEMIRTLTQHLKIPV--IANGGSKEIVDYGG 245 (306)
Q Consensus 209 ~----------~~----------~~---------------------p~~~~~v~~i~~~~~ipv--ia~GGI~s~~~~~~ 245 (306)
+ .| .| +..+++++++++..++|| |++|||.|++++..
T Consensus 180 El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~~IPVV~VAeGGI~Tpeda~~ 259 (330)
T 2yzr_A 180 EVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRLPVVNFAAGGVATPADAAL 259 (330)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHTSCSSEEEECSCCCSHHHHHH
T ss_pred HHHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH
Confidence 0 01 00 011288889999889998 69999999999999
Q ss_pred HHHhh---hhhccccCC--CC
Q psy4398 246 VFSLN---CAFLRNHYP--VE 261 (306)
Q Consensus 246 ~l~~~---v~vGrall~--~p 261 (306)
+++.| +++|++++. ||
T Consensus 260 ~l~~GaDgV~VGsaI~~a~dP 280 (330)
T 2yzr_A 260 MMQLGSDGVFVGSGIFKSENP 280 (330)
T ss_dssp HHHTTCSCEEESHHHHTSSCH
T ss_pred HHHcCcCEEeeHHHHhcCCCH
Confidence 99975 599999984 55
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.7e-09 Score=99.37 Aligned_cols=152 Identities=12% Similarity=0.113 Sum_probs=117.3
Q ss_pred CceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccC
Q psy4398 102 NKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVF 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g 179 (306)
.|+...+++.+++++.++|+++. +||+.|++|+|| +++...++++++|+++ ++++.++...+
T Consensus 137 v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~gd~~l~vD~n~~ 200 (384)
T 2pgw_A 137 VGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGR----------------GEKLDLEITAAVRGEIGDARLRLDANEG 200 (384)
T ss_dssp EEBCEECCCSSHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHTTSTTCEEEEECTTC
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcCCCEEEECcCC----------------CHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 35555566678999999988775 599999999774 5788899999999998 57888888778
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----hhcc
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----AFLR 255 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~vGr 255 (306)
|+.+++.++++.+++.|+++|. ++. .+.+++..+++++.+++||++.+.+.++++++++++.+. ++..
T Consensus 201 ~~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~ 272 (384)
T 2pgw_A 201 WSVHDAINMCRKLEKYDIEFIE-------QPT-VSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGP 272 (384)
T ss_dssp CCHHHHHHHHHHHGGGCCSEEE-------CCS-CTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECH
T ss_pred CCHHHHHHHHHHHHhcCCCEEe-------CCC-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcc
Confidence 9999999999999999999885 222 356899999999999999999999999999999997532 2222
Q ss_pred ccCCCCCchHHHHHHHHHhcCCC
Q psy4398 256 NHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 256 all~~p~~~~~~l~~~~~~~g~~ 278 (306)
...-++ ..-+.+.++.+++|++
T Consensus 273 ~~~GGi-t~~~~i~~~A~~~g~~ 294 (384)
T 2pgw_A 273 REIGGI-QPMMKAAAVAEAAGLK 294 (384)
T ss_dssp HHHTSH-HHHHHHHHHHHHTTCC
T ss_pred hhhCCH-HHHHHHHHHHHHCCCe
Confidence 111111 1122556667777776
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=8.9e-08 Score=83.98 Aligned_cols=207 Identities=12% Similarity=0.105 Sum_probs=140.9
Q ss_pred cccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCC
Q psy4398 21 NANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPRE 100 (306)
Q Consensus 21 ~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 100 (306)
+.+|+|.+|..|+++-.+--.+...++......|+.++..-.-..+ .. ......+ +.+.++..
T Consensus 10 ~l~i~~~~f~SRl~~Gtgky~~~~~~~~a~~asg~e~vtva~rR~~-~~-~~~~~~~---------------~~~~i~~~ 72 (265)
T 1wv2_A 10 PFVIAGRTYGSRLLVGTGKYKDLDETRRAIEASGAEIVTVAVRRTN-IG-QNPDEPN---------------LLDVIPPD 72 (265)
T ss_dssp CEEETTEEESCCEEECCSCSSSHHHHHHHHHHSCCSEEEEEGGGCC-C-----------------------------CTT
T ss_pred CeEECCEEeecceEEecCCCCCHHHHHHHHHHhCCCeEEEEEEeec-cc-cCCCcch---------------HHhhhhhc
Confidence 4789999999999998877444445666666789877665431110 00 0000011 22333334
Q ss_pred CCceEEEec-CCCHHHHHHHHHHHhc---CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 101 KNKIILQIG-TADPERALEAAKKVEH---DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 101 ~~p~ivql~-g~~~~~~~~aa~~~~~---g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
+..+..|-. +.+.++....|+.+.+ |-+-|-|..-.-+ . .++.|+....+..+.+.+. ++.+..-+
T Consensus 73 ~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~------~---~llpD~~~tv~aa~~L~~~-Gf~Vlpy~ 142 (265)
T 1wv2_A 73 RYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQ------K---TLFPNVVETLKAAEQLVKD-GFDVMVYT 142 (265)
T ss_dssp TSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCT------T---TCCBCHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred CCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCc------c---ccCcCHHHHHHHHHHHHHC-CCEEEEEe
Confidence 566777765 4789999999998876 7788777654322 1 3556777766666666443 66666556
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhh
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAF 253 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~v 253 (306)
. .+ ..+++++++.|++.|.-.+..... ..+..++++++++++..++|||+.|||.+++|+..+++.| |.+
T Consensus 143 ~--dd----~~~akrl~~~G~~aVmPlg~pIGs-G~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlV 215 (265)
T 1wv2_A 143 S--DD----PIIARQLAEIGCIAVMPLAGLIGS-GLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLM 215 (265)
T ss_dssp C--SC----HHHHHHHHHSCCSEEEECSSSTTC-CCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred C--CC----HHHHHHHHHhCCCEEEeCCccCCC-CCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 6 33 688999999999999776653322 2234578999999999999999999999999999999985 499
Q ss_pred ccccCC--CC
Q psy4398 254 LRNHYP--VE 261 (306)
Q Consensus 254 Grall~--~p 261 (306)
|+++.. ||
T Consensus 216 gSAI~~a~dP 225 (265)
T 1wv2_A 216 NTAIAHAKDP 225 (265)
T ss_dssp SHHHHTSSSH
T ss_pred ChHHhCCCCH
Confidence 999864 56
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=99.02 E-value=9.3e-09 Score=95.73 Aligned_cols=155 Identities=12% Similarity=0.029 Sum_probs=118.6
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEec
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIR 177 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir 177 (306)
..|+..+++..+++++.+.++++. +||+.|++|+||+ +++...++++++|+++ ++++.++..
T Consensus 133 ~vp~~~~~g~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan 197 (359)
T 1mdl_A 133 PVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYP---------------ALDQDLAVVRSIRQAVGDDFGIMVDYN 197 (359)
T ss_dssp CEEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred CeeeeeecCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 345555543367889998888775 5999999998872 4677789999999988 588999988
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----hh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----AF 253 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~v 253 (306)
.+|+.+++.++++.+++.|+++|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. ++
T Consensus 198 ~~~~~~~a~~~~~~l~~~~i~~iE-------~P~-~~~~~~~~~~l~~~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~i 269 (359)
T 1mdl_A 198 QSLDVPAAIKRSQALQQEGVTWIE-------EPT-LQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMP 269 (359)
T ss_dssp TCSCHHHHHHHHHHHHHHTCSCEE-------CCS-CTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEE-------CCC-ChhhHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEee
Confidence 899999999999999999999873 222 346899999999999999999999999999999988632 22
Q ss_pred ccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 254 LRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 254 Grall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
-....-+ ...-+.+.++.+++|++.
T Consensus 270 k~~~~GG-i~~~~~i~~~A~~~g~~~ 294 (359)
T 1mdl_A 270 DAMKIGG-VTGWIRASALAQQFGIPM 294 (359)
T ss_dssp BTTTTTH-HHHHHHHHHHHHHTTCCB
T ss_pred cchhhCC-HHHHHHHHHHHHHcCCeE
Confidence 2111111 112236777888889883
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-08 Score=95.72 Aligned_cols=149 Identities=6% Similarity=-0.035 Sum_probs=114.9
Q ss_pred CceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~ 178 (306)
.|+...+...+++++.++|+++. +||+.|++|+++ +++...++++++|+++ ++++.++...
T Consensus 135 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~d~~l~vDan~ 198 (379)
T 2rdx_A 135 APMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGA----------------DWQSDIDRIRACLPLLEPGEKAMADANQ 198 (379)
T ss_dssp EEBCEECCCSCSHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHGGGSCTTCEEEEECTT
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeccC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 34544554467899999888775 599999999875 4678889999999998 4889999888
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----hhc
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----AFL 254 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~vG 254 (306)
+|+.+++.++++.+++.|+ +|- ++. + +++..+++++.+++||++.+.+.+.++++++++.+. ++-
T Consensus 199 ~~~~~~a~~~~~~l~~~~i-~iE-------~P~--~-~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik 267 (379)
T 2rdx_A 199 GWRVDNAIRLARATRDLDY-ILE-------QPC--R-SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLK 267 (379)
T ss_dssp CSCHHHHHHHHHHTTTSCC-EEE-------CCS--S-SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCe-EEe-------CCc--C-CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEe
Confidence 9999999999999999999 763 222 2 899999999999999999999999999999988632 222
Q ss_pred cccCCCCCchHHHHHHHHHhcCCC
Q psy4398 255 RNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 255 rall~~p~~~~~~l~~~~~~~g~~ 278 (306)
....-+ ...-+.+.++.+++|++
T Consensus 268 ~~~~GG-it~~~~i~~~A~~~g~~ 290 (379)
T 2rdx_A 268 ISNLGG-LSKARRTRDFLIDNRMP 290 (379)
T ss_dssp TTTTTS-HHHHHHHHHHHHHTTCC
T ss_pred ccccCC-HHHHHHHHHHHHHcCCe
Confidence 221111 12223666777788877
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=92.59 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc--cCCCCCCC--CCCcHHHHHHHHhhCCCc
Q psy4398 156 IACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG--RTKAERPR--HRNRIEMIRTLTQHLKIP 230 (306)
Q Consensus 156 ~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~--~~~~~~~~--~p~~~~~v~~i~~~~~ip 230 (306)
.+.++++.+++.+ +.++.+.+. + .+.++.+++.|+|+|.+.. .+...... ...+++.++++++.+++|
T Consensus 105 ~~~~~i~~~~~~~~~~~v~~~~~---t----~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ip 177 (223)
T 1y0e_A 105 TLDELVSYIRTHAPNVEIMADIA---T----VEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAK 177 (223)
T ss_dssp CHHHHHHHHHHHCTTSEEEEECS---S----HHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSE
T ss_pred CHHHHHHHHHHhCCCceEEecCC---C----HHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCC
Confidence 4567788887765 566666544 2 2235668899999998643 22221111 234788999999999999
Q ss_pred EEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 231 VIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 231 via~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
|++.|||.|.+++.++++.| +++||+++.
T Consensus 178 via~GGI~~~~~~~~~~~~Gad~v~vG~al~~ 209 (223)
T 1y0e_A 178 VIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (223)
T ss_dssp EEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEChHHcC
Confidence 99999999999999999875 499999875
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.6e-09 Score=92.71 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=88.4
Q ss_pred HHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEE
Q psy4398 121 KKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200 (306)
Q Consensus 121 ~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i 200 (306)
...+.|+|.|-|+..+ ..+|+.+.++++.+++. +.++.+.+. ..+.++.+++.|+|+|
T Consensus 96 ~~~~~Gad~V~l~~~~--------------~~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea~~a~~~Gad~I 153 (232)
T 3igs_A 96 ALAQAGAAIIAVDGTA--------------RQRPVAVEALLARIHHH-HLLTMADCS-------SVDDGLACQRLGADII 153 (232)
T ss_dssp HHHHHTCSEEEEECCS--------------SCCSSCHHHHHHHHHHT-TCEEEEECC-------SHHHHHHHHHTTCSEE
T ss_pred HHHHcCCCEEEECccc--------------cCCHHHHHHHHHHHHHC-CCEEEEeCC-------CHHHHHHHHhCCCCEE
Confidence 3345699999886443 23556778888888764 778888776 3567788899999999
Q ss_pred EE--cccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 201 GV--HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 201 ~v--~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
.+ ++.+..... ...++++++++++. ++|||+.|||.|++++.++++.| +++|++++.
T Consensus 154 g~~~~g~t~~~~~-~~~~~~~i~~l~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~ 215 (232)
T 3igs_A 154 GTTMSGYTTPDTP-EEPDLPLVKALHDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR 215 (232)
T ss_dssp ECTTTTSSSSSCC-SSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred EEcCccCCCCCCC-CCCCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence 65 344433222 34589999999998 99999999999999999999875 599999884
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.1e-09 Score=92.16 Aligned_cols=118 Identities=15% Similarity=0.093 Sum_probs=89.6
Q ss_pred HHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCC
Q psy4398 118 EAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI 197 (306)
Q Consensus 118 ~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~ 197 (306)
++....+.|+|.|-++..+ ..+|+.+.++++.+++. +.++.+.+. +.+.++.++++|+
T Consensus 93 ~i~~~~~aGad~I~l~~~~--------------~~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea~~a~~~Ga 150 (229)
T 3q58_A 93 DVDALAQAGADIIAFDASF--------------RSRPVDIDSLLTRIRLH-GLLAMADCS-------TVNEGISCHQKGI 150 (229)
T ss_dssp HHHHHHHHTCSEEEEECCS--------------SCCSSCHHHHHHHHHHT-TCEEEEECS-------SHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEECccc--------------cCChHHHHHHHHHHHHC-CCEEEEecC-------CHHHHHHHHhCCC
Confidence 3333345699999887543 13456778888888774 788888776 3567788899999
Q ss_pred cEEEE--cccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 198 IAIGV--HGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 198 d~i~v--~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
|+|.+ ++.+.... ....++++++++++. ++|||+.|||.|++++.++++.| +++|+++..
T Consensus 151 d~Ig~~~~g~t~~~~-~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~ 215 (229)
T 3q58_A 151 EFIGTTLSGYTGPIT-PVEPDLAMVTQLSHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR 215 (229)
T ss_dssp SEEECTTTTSSSSCC-CSSCCHHHHHHHHTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred CEEEecCccCCCCCc-CCCCCHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcC
Confidence 99965 34443322 234589999999998 99999999999999999999875 499999873
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-08 Score=93.33 Aligned_cols=143 Identities=10% Similarity=0.058 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+.++++. +||+.|.|++||+ +++...++++++|+++ ++++.++...+|+.+++.++
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~ 210 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRP---------------DLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRA 210 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 7999998888775 5999999998873 3567788999999988 58899999889999999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----hhccccCCCCCch
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----AFLRNHYPVEKLP 264 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~vGrall~~p~~~ 264 (306)
++.+++.|+++|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. ++-....-+ ...
T Consensus 211 ~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG-i~~ 281 (371)
T 2ovl_A 211 ARALAPFDLHWIE-------EPT-IPDDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGG-YTT 281 (371)
T ss_dssp HHHHGGGCCSEEE-------CCS-CTTCHHHHHHHHHHHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTS-HHH
T ss_pred HHHHHhcCCCEEE-------CCC-CcccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCC-HHH
Confidence 9999999999873 222 346899999999999999999999999999999988632 332221111 112
Q ss_pred HHHHHHHHHhcCCC
Q psy4398 265 KTILYAHCKYKRFE 278 (306)
Q Consensus 265 ~~~l~~~~~~~g~~ 278 (306)
-+.+.++.+++|++
T Consensus 282 ~~~i~~~A~~~gi~ 295 (371)
T 2ovl_A 282 FRKVAALAEANNML 295 (371)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCe
Confidence 23677888899988
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-09 Score=93.61 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=75.7
Q ss_pred EEEEeccCCCh--HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 172 VSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 172 v~vKir~g~~~--~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
..||++.++.. .+..++++.++++|+++|++++.+..+... ..++++++++++.+++||+++|||+|+++++++++.
T Consensus 22 ~~v~~~~~~~~~~~~~~~~a~~~~~~G~~~i~v~d~~~~~~~~-~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~ 100 (247)
T 3tdn_A 22 FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS-GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLR 100 (247)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTCSS-CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHT
T ss_pred EEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEecCcccCCC-cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc
Confidence 35566643322 358999999999999999999876554443 358999999999999999999999999999999987
Q ss_pred h---hhhccccCCCCCchH
Q psy4398 250 N---CAFLRNHYPVEKLPK 265 (306)
Q Consensus 250 ~---v~vGrall~~p~~~~ 265 (306)
+ +.+||+++.||.+..
T Consensus 101 Gad~V~ig~~~l~dp~~~~ 119 (247)
T 3tdn_A 101 GADKVSINTAAVENPSLIT 119 (247)
T ss_dssp TCSEECCSHHHHHCTHHHH
T ss_pred CCCeeehhhHHhhChHHHH
Confidence 5 499999999995543
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=95.24 Aligned_cols=151 Identities=8% Similarity=-0.020 Sum_probs=116.3
Q ss_pred CceEEEec-CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEec
Q psy4398 102 NKIILQIG-TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~-g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir 177 (306)
.|+..+++ ..++++|.+.++++. +||+.|+||+|+ .+++. .++++++|+++ ++++.++..
T Consensus 153 vp~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~-~e~v~avr~a~g~d~~l~vDan 216 (388)
T 2nql_A 153 FPAYVSGLPERTLKARGELAKYWQDRGFNAFKFATPV---------------ADDGP-AAEIANLRQVLGPQAKIAADMH 216 (388)
T ss_dssp EEEEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGG---------------CTTCH-HHHHHHHHHHHCTTSEEEEECC
T ss_pred eEeeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC---------------CChHH-HHHHHHHHHHhCCCCEEEEECC
Confidence 45555554 468999999888775 599999999775 24667 89999999987 588999988
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----hh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----AF 253 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~v 253 (306)
.+|+.+++.++++.+++.|+++|. ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. ++
T Consensus 217 ~~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~i 288 (388)
T 2nql_A 217 WNQTPERALELIAEMQPFDPWFAE-------APV-WTEDIAGLEKVSKNTDVPIAVGEEWRTHWDMRARIERCRIAIVQP 288 (388)
T ss_dssp SCSCHHHHHHHHHHHGGGCCSCEE-------CCS-CTTCHHHHHHHHTSCCSCEEECTTCCSHHHHHHHHTTSCCSEECC
T ss_pred CCCCHHHHHHHHHHHhhcCCCEEE-------CCC-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEe
Confidence 889999999999999999999873 222 346899999999999999999999999999999997532 22
Q ss_pred ccccCCCCCchHHHHHHHHHhcCCC
Q psy4398 254 LRNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 254 Grall~~p~~~~~~l~~~~~~~g~~ 278 (306)
-... +-...-+.+.++.+++|++
T Consensus 289 k~~~--GGit~~~~i~~~A~~~g~~ 311 (388)
T 2nql_A 289 EMGH--KGITNFIRIGALAAEHGID 311 (388)
T ss_dssp CHHH--HCHHHHHHHHHHHHHHTCE
T ss_pred cCCC--CCHHHHHHHHHHHHHcCCe
Confidence 1111 1112223666778888887
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.89 E-value=5.9e-09 Score=91.18 Aligned_cols=115 Identities=14% Similarity=0.101 Sum_probs=84.8
Q ss_pred HhcCCCEEEEccCCCccccccCCccccccCCh--HHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcE
Q psy4398 123 VEHDVAAIDINMGCPKQFSLTGGMGAALLSTP--DIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIA 199 (306)
Q Consensus 123 ~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~--~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~ 199 (306)
++.|+|.|.++...- .++ ..+.++++.+++.. +.++.+.++ + .+.++.+.++|+|+
T Consensus 98 ~~~Gad~V~l~~~~~--------------~~~~~~~~~~~i~~i~~~~~~~~v~~~~~---t----~~ea~~a~~~Gad~ 156 (234)
T 1yxy_A 98 AALNIAVIAMDCTKR--------------DRHDGLDIASFIRQVKEKYPNQLLMADIS---T----FDEGLVAHQAGIDF 156 (234)
T ss_dssp HTTTCSEEEEECCSS--------------CCTTCCCHHHHHHHHHHHCTTCEEEEECS---S----HHHHHHHHHTTCSE
T ss_pred HHcCCCEEEEccccc--------------CCCCCccHHHHHHHHHHhCCCCeEEEeCC---C----HHHHHHHHHcCCCE
Confidence 345999999986531 111 23467888888766 667777665 2 23377888999999
Q ss_pred E--EEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 200 I--GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 200 i--~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
| ++++.+.......+.+++.++++++. ++||++.|||+|.+++.++++.| +++||+++.
T Consensus 157 i~~~v~g~~~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 157 VGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR 220 (234)
T ss_dssp EECTTTTSSTTSCCSSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred EeeeccccCCCCcCCCCCCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 9 67765432211124588999999998 99999999999999999999875 499999986
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.9e-08 Score=94.06 Aligned_cols=166 Identities=14% Similarity=0.159 Sum_probs=123.6
Q ss_pred CCceEEE-ec-C-C-------CHHHHHHHHHHHh-cCCCEEEEcc------CC----CccccccCCcccccc-CChHHHH
Q psy4398 101 KNKIILQ-IG-T-A-------DPERALEAAKKVE-HDVAAIDINM------GC----PKQFSLTGGMGAALL-STPDIAC 158 (306)
Q Consensus 101 ~~p~ivq-l~-g-~-------~~~~~~~aa~~~~-~g~d~veln~------gc----P~~~~~~~~~G~~l~-~~~~~~~ 158 (306)
..|+..+ +. | . ++++|.+.|+++. +||+.|.|+. |+ |..| +.||+... ++++...
T Consensus 129 ~vp~y~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~---~~~GG~~~~~~~~~~~ 205 (410)
T 2gl5_A 129 KLRTYASQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRN---RNYSGLLLADQLKMGE 205 (410)
T ss_dssp SEEEEEECGGGCCTTCCSCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCC---GGGGSCCCHHHHHHHH
T ss_pred ceeEeEecccCCccccccccCCHHHHHHHHHHHHHcCCCEEEEeccccCCccccccccccc---ccccCccchhHHHHHH
Confidence 3566665 65 4 4 8999999888775 5999999996 54 3322 35787765 5778889
Q ss_pred HHHHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 159 NILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 159 eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
++++++|+++ ++++.+....+|+.+++.++++.+++.|++.|- ++. .+.+++..+++++.+++||++.+.
T Consensus 206 e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE-------~P~-~~~~~~~~~~l~~~~~iPIa~dE~ 277 (410)
T 2gl5_A 206 ARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYE-------EPI-HPLNSDNMQKVSRSTTIPIATGER 277 (410)
T ss_dssp HHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEE-------CSS-CSSCHHHHHHHHHHCSSCEEECTT
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeEE-------CCC-ChhhHHHHHHHHhhCCCCEEecCC
Confidence 9999999988 578888888889999999999999999998774 122 346899999999999999999999
Q ss_pred CCCHHHHHHHHHhhhhhccccCCCC-Cc----hHHHHHHHHHhcCCCC
Q psy4398 237 SKEIVDYGGVFSLNCAFLRNHYPVE-KL----PKTILYAHCKYKRFEV 279 (306)
Q Consensus 237 I~s~~~~~~~l~~~v~vGrall~~p-~~----~~~~l~~~~~~~g~~~ 279 (306)
+.+.++++++++.+. ...+.-++ .+ .-+.+.+..+++|++.
T Consensus 278 ~~~~~~~~~~i~~~~--~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~ 323 (410)
T 2gl5_A 278 SYTRWGYRELLEKQS--IAVAQPDLCLCGGITEGKKICDYANIYDTTV 323 (410)
T ss_dssp CCTTHHHHHHHHTTC--CSEECCCTTTTTHHHHHHHHHHHHHTTTCEE
T ss_pred cCCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeE
Confidence 999999999987532 01111122 11 1126667777788773
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-08 Score=90.48 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhh---hhhccccCCCCC---chHH---HHHHHHHhcCC
Q psy4398 214 RNRIEMIRTLTQHLKIPVI--ANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK---LPKT---ILYAHCKYKRF 277 (306)
Q Consensus 214 p~~~~~v~~i~~~~~ipvi--a~GGI~s~~~~~~~l~~~---v~vGrall~~p~---~~~~---~l~~~~~~~g~ 277 (306)
+..+++++++++.+++||+ ++|||.|.+++.++++.| +++||+++..+. ..+. .+.+|++.+++
T Consensus 193 ~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p~~~~~~l~~~~~~~~~~~~~ 267 (305)
T 2nv1_A 193 GAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHFTDYKLI 267 (305)
T ss_dssp TCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTTTCHHHH
T ss_pred cccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 3578899999998899999 999999999999999864 599999996432 2221 45555555543
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-08 Score=110.03 Aligned_cols=215 Identities=11% Similarity=0.066 Sum_probs=137.9
Q ss_pred ccccccccccCCceEEccCC-CCCCHHHHHHHHHcCC-CEE-EecceechhhhhhhhhhhcccccccccCCCCCceeeec
Q psy4398 20 ANANQANINYSNKIILAPMV-RMNTLPFRLLALDYGA-DLV-YSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRT 96 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~-~~t~~~~r~~~~~~G~-g~~-~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 96 (306)
+.+++..+.-+.||+.|||. ++++..+...+.++|. |.+ -..+.+++.+....+.... .
T Consensus 572 l~t~~t~~lg~~PIi~a~M~~~vs~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~vk~------------------~ 633 (2060)
T 2uva_G 572 VDTKMSRLLGVPPVMVAGMTPTTVPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKIEK------------------A 633 (2060)
T ss_dssp EECHHHHHHTSCSEEECCCTTTTCSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHHGG------------------G
T ss_pred cchhhhhccccceEEecCCCCccccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHHHh------------------h
Confidence 44555555448999999999 6888888887667664 444 2233333322221111100 0
Q ss_pred CCCCCCceEEEecCCCHHH---HHHHHHHHh-cCCCE--EEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc
Q psy4398 97 CPREKNKIILQIGTADPER---ALEAAKKVE-HDVAA--IDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI 170 (306)
Q Consensus 97 ~~~~~~p~ivql~g~~~~~---~~~aa~~~~-~g~d~--veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~ 170 (306)
. ..+.|+++++...+++. +.+..+.+. .|++. |.+..|.|. . .++++.+++. ++
T Consensus 634 ~-~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~p~---------------~---e~~~~~l~~~-gi 693 (2060)
T 2uva_G 634 I-PPGRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIEGLTIGAGVPS---------------I---EVANEYIQTL-GI 693 (2060)
T ss_dssp S-CTTCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEEEEEEESSCCC---------------H---HHHHHHHHHS-CC
T ss_pred c-ccCCCeEecccccCcccchhHHHHHHHHHHcCCCcceEeecCCCCC---------------H---HHHHHHHHHc-CC
Confidence 1 12568999988766542 344555454 58888 888777664 1 2334444443 77
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEE---EcccCCCCCCCC----CCcHHHHHHHHhhCCCcEEEecCCCCHHHH
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIG---VHGRTKAERPRH----RNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~---v~~~~~~~~~~~----p~~~~~v~~i~~~~~ipvia~GGI~s~~~~ 243 (306)
++...+. +..+..+.+..+.++|+|.|+ +.|....+.... ...+.++.+|++.+++|||+.|||.|.+++
T Consensus 694 ~~i~~v~---~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~i 770 (2060)
T 2uva_G 694 RHISFKP---GSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSEDT 770 (2060)
T ss_dssp SEEEECC---CSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHHH
T ss_pred eEEEecC---CHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHHH
Confidence 7774444 446778887888999999999 776544332221 224678899999999999999999999999
Q ss_pred HHHH-----------Hh---hhhhccccCCCCCc-hHHHHHHHHHhc
Q psy4398 244 GGVF-----------SL---NCAFLRNHYPVEKL-PKTILYAHCKYK 275 (306)
Q Consensus 244 ~~~l-----------~~---~v~vGrall~~p~~-~~~~l~~~~~~~ 275 (306)
.+++ .+ +|++|+.++.-.+. .....++.+.+.
T Consensus 771 ~aaltg~ws~~~g~palGAdgV~~GT~f~~t~Ea~~s~~~K~~lv~a 817 (2060)
T 2uva_G 771 YPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAKEAHTSKQAKQAIVDA 817 (2060)
T ss_dssp HHHHHTCGGGTTTSCCCCCSCEEESGGGGGBTTSCCCHHHHHHHHTS
T ss_pred HHHhcCcchhhcCCCCCCCCEEEEchhhhcCcCCCCCHHHHHHHHhC
Confidence 9999 54 56999999864422 223445544443
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=87.48 Aligned_cols=137 Identities=14% Similarity=0.136 Sum_probs=93.4
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
.|+++.+.+.+++++.+.++.+.+ |++.|++++.+|.. .+.++.+|+.++..+.+....-.
T Consensus 10 ~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~~~------------------~~~i~~ir~~~~~~~~ig~~~v~ 71 (205)
T 1wa3_A 10 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDA------------------DTVIKELSFLKEKGAIIGAGTVT 71 (205)
T ss_dssp HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTH------------------HHHHHHTHHHHHTTCEEEEESCC
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCChhH------------------HHHHHHHHHHCCCCcEEEecccC
Confidence 589999999999999999998875 89999999887641 23455666554322334432112
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCC-------------------CCC---------------C-CCCCcHHHHHHHHh
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTK-------------------AER---------------P-RHRNRIEMIRTLTQ 225 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~-------------------~~~---------------~-~~p~~~~~v~~i~~ 225 (306)
+.+ .++.+.++|+|+| ++.... ... . ..+..++.++++++
T Consensus 72 ~~~----~~~~a~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~l~~ 146 (205)
T 1wa3_A 72 SVE----QCRKAVESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKG 146 (205)
T ss_dssp SHH----HHHHHHHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHHHHT
T ss_pred CHH----HHHHHHHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHH
Confidence 322 2455566788888 554322 000 0 00124577888998
Q ss_pred hC-CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCc
Q psy4398 226 HL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKL 263 (306)
Q Consensus 226 ~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~ 263 (306)
.+ ++||++.|||+ .+++.++++.| +++|++++. +.|
T Consensus 147 ~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~-~d~ 186 (205)
T 1wa3_A 147 PFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVK-GTP 186 (205)
T ss_dssp TCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHC-SCH
T ss_pred hCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEECccccC-CCH
Confidence 88 89999999997 78999998875 499999987 543
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=8.1e-08 Score=90.08 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
.+++++.+.++++. +||+.|.|+++++. +| ...+++...++++++|+++ ++++.++...+|+.+++.+
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~-------~~--~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~ 218 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPP-------VS--WAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALA 218 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTT-------ST--TCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCc-------cc--cccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHH
Confidence 68999999888775 59999999999854 22 2358899999999999988 5788998888899999999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC-HHHHHHHHHhhhhhccccCCCC-----
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE-IVDYGGVFSLNCAFLRNHYPVE----- 261 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~~~~l~~~v~vGrall~~p----- 261 (306)
+++.+++.|++.|- ++. .+.+++..+++++.+++||++.+.+.+ .++++++++.+. ...+.-++
T Consensus 219 ~~~~l~~~~i~~iE-------~P~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~i~~~~--~d~v~ik~~~~GG 288 (382)
T 1rvk_A 219 LGRGLEKLGFDWIE-------EPM-DEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGA--CDILRTGVNDVGG 288 (382)
T ss_dssp HHHHHHTTTCSEEE-------CCS-CTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTC--CSEEEECHHHHTS
T ss_pred HHHHHHhcCCCEEe-------CCC-ChhhHHHHHHHHhhCCCCEEEeCCccCcHHHHHHHHHcCC--CCEEeeCchhcCC
Confidence 99999999999874 222 246899999999999999999999999 999999988632 00000111
Q ss_pred CchHHHHHHHHHhcCCC
Q psy4398 262 KLPKTILYAHCKYKRFE 278 (306)
Q Consensus 262 ~~~~~~l~~~~~~~g~~ 278 (306)
...-+.+.++.+++|++
T Consensus 289 it~~~~i~~~A~~~g~~ 305 (382)
T 1rvk_A 289 ITPALKTMHLAEAFGME 305 (382)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 11123666777888887
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.3e-08 Score=86.34 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=108.0
Q ss_pred CceEEEecCCCH--HHHHHHHHHHhcCCCEEEEc--cCCCccccccCCccccc----------cCChHHHHHHHHHHHhc
Q psy4398 102 NKIILQIGTADP--ERALEAAKKVEHDVAAIDIN--MGCPKQFSLTGGMGAAL----------LSTPDIACNILTTLISN 167 (306)
Q Consensus 102 ~p~ivql~g~~~--~~~~~aa~~~~~g~d~veln--~gcP~~~~~~~~~G~~l----------~~~~~~~~eiv~~v~~~ 167 (306)
..++.+|...++ +.+.+.++.+++++|.||++ +++|.. | |... ..+.....++++++++.
T Consensus 5 ~~~~~~i~~~~~~~~~~~~~a~~~~~~ad~iel~~p~sdp~~----D--G~~~~~~~~~al~~g~~~~~~~~~i~~i~~~ 78 (248)
T 1geq_A 5 GSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIA----D--GKTIQESHYRALKNGFKLREAFWIVKEFRRH 78 (248)
T ss_dssp TEEEEEEETTSSCHHHHHHHHHHHGGGBSCEEEECCCSCCTT----S--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEECCCCCCCCC----C--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 358889988887 58999888776449999998 566652 1 1111 12567778999999998
Q ss_pred ccccEEEEeccCCCh---HHHHHHHHHHHHcCCcEEEEcccC-----------------------C--------------
Q psy4398 168 LSIPVSCKIRVFHNE---ADTIALCKRLEACGIIAIGVHGRT-----------------------K-------------- 207 (306)
Q Consensus 168 ~~~pv~vKir~g~~~---~~~~~~a~~l~~~G~d~i~v~~~~-----------------------~-------------- 207 (306)
+++|+.+... .+. ....+.++.+.++|+|+++++... .
T Consensus 79 ~~~pv~~~~~--~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~ 156 (248)
T 1geq_A 79 SSTPIVLMTY--YNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMT 156 (248)
T ss_dssp CCCCEEEEEC--HHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHC
T ss_pred CCCCEEEEec--cchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcC
Confidence 8889887664 121 113578888888999999986411 0
Q ss_pred C--------CCCCC------CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 208 A--------ERPRH------RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 208 ~--------~~~~~------p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
+ ....+ +..++.++++++.+++||++.|||++.+++.++++.| +.+|++++.
T Consensus 157 d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~ 225 (248)
T 1geq_A 157 TGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVK 225 (248)
T ss_dssp SSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred CCeEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHh
Confidence 0 00011 2246788999999999999999999999999998875 499999885
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-08 Score=92.36 Aligned_cols=159 Identities=9% Similarity=0.113 Sum_probs=119.3
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCcc--ccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHH
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQ--FSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEAD 184 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~--~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~ 184 (306)
..+++++.+.|+++. +||+.|.|+.+|+.. ......||++..++++...++++++|+++ ++++.+....+|+.++
T Consensus 135 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~ 214 (392)
T 2poz_A 135 ADTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTTDE 214 (392)
T ss_dssp CCSHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHH
Confidence 357899988888775 599999999986321 00123567776778899999999999988 5788888888899999
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-C-
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-K- 262 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~- 262 (306)
+.++++.+++.|+++|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. ...+.-++ .
T Consensus 215 a~~~~~~l~~~~i~~iE-------~P~-~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~--~d~v~ik~~~~ 284 (392)
T 2poz_A 215 TIRFCRKIGELDICFVE-------EPC-DPFDNGALKVISEQIPLPIAVGERVYTRFGFRKIFELQA--CGIIQPDIGTA 284 (392)
T ss_dssp HHHHHHHHGGGCEEEEE-------CCS-CTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHTTTC--CSEECCCTTTS
T ss_pred HHHHHHHHHhcCCCEEE-------CCC-CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCC--CCEEecCcccc
Confidence 99999999999988774 222 345899999999999999999999999999999987532 00111122 1
Q ss_pred ---chHHHHHHHHHhcCCC
Q psy4398 263 ---LPKTILYAHCKYKRFE 278 (306)
Q Consensus 263 ---~~~~~l~~~~~~~g~~ 278 (306)
..-+.+.+..+++|++
T Consensus 285 GGit~~~~i~~~A~~~g~~ 303 (392)
T 2poz_A 285 GGLMETKKICAMAEAYNMR 303 (392)
T ss_dssp SCHHHHHHHHHHHHTTTCE
T ss_pred CCHHHHHHHHHHHHHcCCe
Confidence 1123666777778877
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-07 Score=88.21 Aligned_cols=153 Identities=11% Similarity=0.075 Sum_probs=119.2
Q ss_pred CceEEEe-c-CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEe
Q psy4398 102 NKIILQI-G-TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKI 176 (306)
Q Consensus 102 ~p~ivql-~-g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 176 (306)
.|+..++ . ..+++++++.++.+. +||+.+.+++|| +++.-.++++++|+++ +.++.++.
T Consensus 139 v~~y~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiKvG~----------------~~~~d~~~v~avR~a~g~d~~l~vDa 202 (389)
T 3ozy_A 139 VRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR----------------APRKDAANLRAMRQRVGADVEILVDA 202 (389)
T ss_dssp EEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHCCCCEEeeccCC----------------CHHHHHHHHHHHHHHcCCCceEEEEC
Confidence 6777777 5 688999998888765 599999999876 3666788899999987 57899998
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHH-hhCCCcEEEecCCCCHHHHHHHHHhhh----
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLT-QHLKIPVIANGGSKEIVDYGGVFSLNC---- 251 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~-~~~~ipvia~GGI~s~~~~~~~l~~~v---- 251 (306)
..+|+.+++.++++.+++.|+++|. ++. .+.+++..++++ +.+++||++.+.+.+.++++++++.+.
T Consensus 203 n~~~~~~~A~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v 274 (389)
T 3ozy_A 203 NQSLGRHDALAMLRILDEAGCYWFE-------EPL-SIDDIEGHRILRAQGTPVRIATGENLYTRNAFNDYIRNDAIDVL 274 (389)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCSEEE-------SCS-CTTCHHHHHHHHTTCCSSEEEECTTCCHHHHHHHHHHTTCCSEE
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEEE-------CCC-CcccHHHHHHHHhcCCCCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence 8899999999999999999999984 222 345889999999 999999999999999999999987532
Q ss_pred hhccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 252 AFLRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 252 ~vGrall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
++--...-+ ...-+.+.++.+++|++.
T Consensus 275 ~ik~~~~GG-it~~~~ia~~A~~~gi~~ 301 (389)
T 3ozy_A 275 QADASRAGG-ITEALAISASAASAHLAW 301 (389)
T ss_dssp CCCTTTSSC-HHHHHHHHHHHHHTTCEE
T ss_pred EeCccccCC-HHHHHHHHHHHHHcCCEE
Confidence 221111111 112236778888888883
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-07 Score=88.47 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
+.+++++.+.|+++. +||+.|+|+.++. .++...++++++|+++ ++++.++...+|+.+++.
T Consensus 147 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~---------------~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~ 211 (391)
T 2qgy_A 147 KKDTNDYLRQIEKFYGKKYGGIKIYPMLD---------------SLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTK 211 (391)
T ss_dssp CCCHHHHHHHHHHHHHTTCSCEEECCCCS---------------SHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccCCC---------------hHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHH
Confidence 468999999888775 5999999986631 1578889999999987 588999998899999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----hhccccCCCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----AFLRNHYPVEK 262 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~vGrall~~p~ 262 (306)
++++.+++.|+++|- ++. .+.+++..+++++.+++||++.+.+.++++++++++.+. ++-....-+ .
T Consensus 212 ~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG-i 282 (391)
T 2qgy_A 212 SFLKEVSSFNPYWIE-------EPV-DGENISLLTEIKNTFNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGG-L 282 (391)
T ss_dssp HHHHHHGGGCCSEEE-------CSS-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSC-H
T ss_pred HHHHHHHhcCCCeEe-------CCC-ChhhHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCC-H
Confidence 999999999999874 222 246899999999999999999999999999999997632 221111111 1
Q ss_pred chHHHHHHHHHhcCCC
Q psy4398 263 LPKTILYAHCKYKRFE 278 (306)
Q Consensus 263 ~~~~~l~~~~~~~g~~ 278 (306)
..-+.+.++.+++|++
T Consensus 283 t~~~~i~~~A~~~gi~ 298 (391)
T 2qgy_A 283 IDIIEISNEASNNGIF 298 (391)
T ss_dssp HHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHCCCE
Confidence 1223666777788877
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=98.77 E-value=9e-08 Score=89.67 Aligned_cols=122 Identities=12% Similarity=0.154 Sum_probs=102.6
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEec
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIR 177 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir 177 (306)
..|+...+...+++++.+.++++. +||+.|++++||| +++...++++++|+++ ++++.++..
T Consensus 134 ~v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan 198 (378)
T 2qdd_A 134 PVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGS---------------DPAQDIARIEAISAGLPDGHRVTFDVN 198 (378)
T ss_dssp CEEBEEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHSCCTTCEEEEECT
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHhhhheeecCCCC---------------ChHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 356666666678999998888775 5999999998875 4677889999999988 578888888
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+|+.+++.++++.++ .|+ .| +++. + +++..+++++.+++||++.+.+.+.++++++++.
T Consensus 199 ~~~~~~~a~~~~~~l~-~~i-~i-------EqP~--~-d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~ 258 (378)
T 2qdd_A 199 RAWTPAIAVEVLNSVR-ARD-WI-------EQPC--Q-TLDQCAHVARRVANPIMLDECLHEFSDHLAAWSR 258 (378)
T ss_dssp TCCCHHHHHHHHTSCC-CCC-EE-------ECCS--S-SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCc-EE-------EcCC--C-CHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHh
Confidence 8899999999999998 888 65 2233 2 8999999999999999999999999999999875
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=7.4e-08 Score=89.90 Aligned_cols=152 Identities=13% Similarity=0.171 Sum_probs=116.7
Q ss_pred CceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~ 178 (306)
.|+-.++++.+++++.+.++++. +||+.|.||+|+ +++...++++++|+++ ++++.++...
T Consensus 131 v~~~~~i~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~~~~l~vDan~ 194 (369)
T 2p8b_A 131 FPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGT----------------NVKEDVKRIEAVRERVGNDIAIRVDVNQ 194 (369)
T ss_dssp EECCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred eeeeEEecCCChHHHHHHHHHHHHcCcCEEEEEeCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 45556777889999998888775 599999998763 4677889999999988 5788888887
Q ss_pred CCChHHHH-HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----hh
Q psy4398 179 FHNEADTI-ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----AF 253 (306)
Q Consensus 179 g~~~~~~~-~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~v 253 (306)
+|+.+++. ++++.+++.|+++|. ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. ++
T Consensus 195 ~~~~~~a~~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~i 266 (369)
T 2p8b_A 195 GWKNSANTLTALRSLGHLNIDWIE-------QPV-IADDIDAMAHIRSKTDLPLMIDEGLKSSREMRQIIKLEAADKVNI 266 (369)
T ss_dssp TTBSHHHHHHHHHTSTTSCCSCEE-------CCB-CTTCHHHHHHHHHTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCcEEE-------CCC-CcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEe
Confidence 89999999 999999999999874 233 356899999999999999999999999999999988532 21
Q ss_pred ccccCCCCCchHHHHHHHHHhcCCC
Q psy4398 254 LRNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 254 Grall~~p~~~~~~l~~~~~~~g~~ 278 (306)
-....-+ ...-+.+.+..+++|++
T Consensus 267 k~~~~GG-it~~~~i~~~A~~~g~~ 290 (369)
T 2p8b_A 267 KLMKCGG-IYPAVKLAHQAEMAGIE 290 (369)
T ss_dssp CHHHHTS-HHHHHHHHHHHHHTTCE
T ss_pred ecchhCC-HHHHHHHHHHHHHcCCc
Confidence 1111101 11223566777788877
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-07 Score=89.37 Aligned_cols=156 Identities=10% Similarity=0.103 Sum_probs=117.0
Q ss_pred CCceEEEec-CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCCh-HHHHHHHHHHHhcc--cccEEEE
Q psy4398 101 KNKIILQIG-TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTP-DIACNILTTLISNL--SIPVSCK 175 (306)
Q Consensus 101 ~~p~ivql~-g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~-~~~~eiv~~v~~~~--~~pv~vK 175 (306)
..|+..++. +.+++++.+.++++. +||+.|.++. ||. |+ ++ +...++++++|+++ ++++.++
T Consensus 133 ~vp~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~-spv--------G~----~~~~~~~e~v~avr~a~G~d~~l~vD 199 (401)
T 2hzg_A 133 GKRPYASLLFGDTPQETLERARAARRDGFAAVKFGW-GPI--------GR----GTVAADADQIMAAREGLGPDGDLMVD 199 (401)
T ss_dssp CBEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEEES-TTT--------TS----SCHHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred ceEeeEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcC-CCC--------CC----CHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 356655554 568999999888775 5999999996 553 32 44 77789999999988 5789999
Q ss_pred eccCC--ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHh-hCCCcEEEecCCCCHHHHHHHHHhhh-
Q psy4398 176 IRVFH--NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQ-HLKIPVIANGGSKEIVDYGGVFSLNC- 251 (306)
Q Consensus 176 ir~g~--~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~-~~~ipvia~GGI~s~~~~~~~l~~~v- 251 (306)
...+| +.+++.++++.+++.|++.|- ++. .+.+++..+++++ .+++||++.+.+.+.++++++++.+.
T Consensus 200 an~~~~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~~iPI~~dE~~~~~~~~~~~i~~~~~ 271 (401)
T 2hzg_A 200 VGQIFGEDVEAAAARLPTLDAAGVLWLE-------EPF-DAGALAAHAALAGRGARVRIAGGEAAHNFHMAQHLMDYGRI 271 (401)
T ss_dssp CTTTTTTCHHHHHTTHHHHHHTTCSEEE-------CCS-CTTCHHHHHHHHTTCCSSEEEECTTCSSHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEE-------CCC-CccCHHHHHHHHhhCCCCCEEecCCcCCHHHHHHHHHCCCC
Confidence 88899 999999999999999999874 222 3468999999999 89999999999999999999997532
Q ss_pred ---hhccccCCCCCchHHHHHHHHHhcCCC
Q psy4398 252 ---AFLRNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 252 ---~vGrall~~p~~~~~~l~~~~~~~g~~ 278 (306)
++-....-+ ...-+.+.++.+++|++
T Consensus 272 d~v~ik~~~~GG-it~~~~i~~~A~~~g~~ 300 (401)
T 2hzg_A 272 GFIQIDCGRIGG-LGPAKRVADAAQARGIT 300 (401)
T ss_dssp SEEEECHHHHTS-HHHHHHHHHHHHHHTCE
T ss_pred CEEEeCcchhCC-HHHHHHHHHHHHHcCCE
Confidence 111110100 11123566777788877
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-07 Score=87.69 Aligned_cols=122 Identities=12% Similarity=0.105 Sum_probs=104.1
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEec
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIR 177 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir 177 (306)
..|+...+.+.+++++.+.++++. +||+.|+||++. +++...++++++|+++ ++++.++..
T Consensus 135 ~vp~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~~~~l~vDan 198 (371)
T 2ps2_A 135 RLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISG----------------EPVTDAKRITAALANQQPDEFFIVDAN 198 (371)
T ss_dssp CEEBEEEECSCCHHHHHHHHHHHHTTTCCEEEEECCS----------------CHHHHHHHHHHHTTTCCTTCEEEEECT
T ss_pred ceEEEEEeCCCCHHHHHHHHHHHHHhChheEEeecCC----------------CHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 456777787789999999888776 599999998763 3677889999999988 578888888
Q ss_pred cCCChHHHHHHHHHH-HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 178 VFHNEADTIALCKRL-EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l-~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+|+.+++.++++.+ ++.|+ .|- ++. + +++..+++++.+++||++.+.+.+.++++++++.
T Consensus 199 ~~~~~~~a~~~~~~l~~~~~i-~iE-------~P~--~-~~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~ 260 (371)
T 2ps2_A 199 GKLSVETALRLLRLLPHGLDF-ALE-------APC--A-TWRECISLRRKTDIPIIYDELATNEMSIVKILAD 260 (371)
T ss_dssp TBCCHHHHHHHHHHSCTTCCC-EEE-------CCB--S-SHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhhcCC-cCc-------CCc--C-CHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHh
Confidence 889999999999999 99998 663 222 2 8899999999999999999999999999999886
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-07 Score=87.33 Aligned_cols=160 Identities=8% Similarity=-0.009 Sum_probs=121.5
Q ss_pred CCceEEEe-cCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEe
Q psy4398 101 KNKIILQI-GTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKI 176 (306)
Q Consensus 101 ~~p~ivql-~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 176 (306)
..|+..++ ...+++++++.++.+. +||+.|.|++++... + |+ ++++...+.++++|+++ ++++.+..
T Consensus 167 ~v~~y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~----d--g~---~~~~~die~v~avReavG~d~~L~vDa 237 (412)
T 3stp_A 167 RIPVYYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPK----D--GM---PGMRENLKRVEAVREVIGYDNDLMLEC 237 (412)
T ss_dssp SEEEEEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGG----G--HH---HHHHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcc----c--cc---chHHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 45666663 4568999999988775 599999999987421 1 22 35677888999999988 57899998
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccc
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRN 256 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGra 256 (306)
..+|+.+++.++++.|++.|+++|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. .
T Consensus 238 N~~~~~~~Ai~~~~~Le~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~li~~~a----~ 305 (412)
T 3stp_A 238 YMGWNLDYAKRMLPKLAPYEPRWLE-------EPV-IADDVAGYAELNAMNIVPISGGEHEFSVIGCAELINRKA----V 305 (412)
T ss_dssp TTCSCHHHHHHHHHHHGGGCCSEEE-------CCS-CTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTC----C
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEE-------CCC-CcccHHHHHHHHhCCCCCEEeCCCCCCHHHHHHHHHcCC----C
Confidence 8899999999999999999999984 222 345889999999999999999999999999999987531 1
Q ss_pred cCCCCCchH-------HHHHHHHHhcCCCCCc
Q psy4398 257 HYPVEKLPK-------TILYAHCKYKRFEVPK 281 (306)
Q Consensus 257 ll~~p~~~~-------~~l~~~~~~~g~~~~~ 281 (306)
-+-+|...+ +.+.+..+++|++...
T Consensus 306 D~v~ik~~~~GGit~a~kia~~A~a~gi~v~~ 337 (412)
T 3stp_A 306 SVLQYDTNRVGGITAAQKINAIAEAAQIPVIP 337 (412)
T ss_dssp SEECCCHHHHTHHHHHHHHHHHHHHHTCCBCC
T ss_pred CEEecChhhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 112222222 2556667788887443
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.7e-07 Score=87.35 Aligned_cols=125 Identities=11% Similarity=0.238 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEcc----CCCccccccCCcccccc--CChHHHHHHHHHHHhcc--cccEEEEeccCCCh
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINM----GCPKQFSLTGGMGAALL--STPDIACNILTTLISNL--SIPVSCKIRVFHNE 182 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~----gcP~~~~~~~~~G~~l~--~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~ 182 (306)
+++++.+.|+++. +||+.|.+++ |.... .||+.+. ++++...++++++|+++ ++++.+....+|+.
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~-----~~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~ 223 (410)
T 2qq6_A 149 SNEEYIAVAREAVERGFDAIKLDVDDITGPLHR-----DFWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDI 223 (410)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCS-----CSSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeccccCCcccC-----CcCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 6888988888775 5999999998 54221 1566665 46788899999999987 47788887778999
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+++.++++.+++.|++.|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.
T Consensus 224 ~~a~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ 282 (410)
T 2qq6_A 224 PSSIRFARAMEPFGLLWLE-------EPT-PPENLDALAEVRRSTSTPICAGENVYTRFDFRELFAK 282 (410)
T ss_dssp HHHHHHHHHHGGGCCSEEE-------CCS-CTTCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCeEE-------CCC-ChhhHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHc
Confidence 9999999999999999875 122 3458999999999999999999999999999999875
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=5.6e-08 Score=94.27 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=90.5
Q ss_pred HHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHH
Q psy4398 115 RALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRL 192 (306)
Q Consensus 115 ~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l 192 (306)
++.+.++.+ ++|+|.|++|+.. | .+....++++++++.+ ++||.++-- .+ .+.++.+
T Consensus 237 ~~~~~a~~l~~aGvd~v~i~~~~----------G-----~~~~~~e~i~~i~~~~p~~pvi~g~~--~t----~e~a~~l 295 (494)
T 1vrd_A 237 ETMERVEKLVKAGVDVIVIDTAH----------G-----HSRRVIETLEMIKADYPDLPVVAGNV--AT----PEGTEAL 295 (494)
T ss_dssp THHHHHHHHHHTTCSEEEECCSC----------C-----SSHHHHHHHHHHHHHCTTSCEEEEEE--CS----HHHHHHH
T ss_pred hHHHHHHHHHHhCCCEEEEEecC----------C-----chHHHHHHHHHHHHHCCCceEEeCCc--CC----HHHHHHH
Confidence 345555555 4699999998642 1 2456778899999988 789988643 33 3445788
Q ss_pred HHcCCcEEEEcccCCCC------CCCCCCcHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 193 EACGIIAIGVHGRTKAE------RPRHRNRIEMIRTLTQH---LKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~------~~~~p~~~~~v~~i~~~---~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
.++|+|+|.+....... ...+.+.+..+..+++. +++|||+.|||.+..++.++++.|+ ++||+++.+
T Consensus 296 ~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~iGr~~l~~ 375 (494)
T 1vrd_A 296 IKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGT 375 (494)
T ss_dssp HHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTB
T ss_pred HHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHhcC
Confidence 89999999994321100 00122345555555544 6899999999999999999999864 999999887
Q ss_pred CCch
Q psy4398 261 EKLP 264 (306)
Q Consensus 261 p~~~ 264 (306)
|.++
T Consensus 376 ~e~~ 379 (494)
T 1vrd_A 376 EEAP 379 (494)
T ss_dssp TTSS
T ss_pred CcCC
Confidence 7553
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.6e-07 Score=85.23 Aligned_cols=124 Identities=15% Similarity=0.258 Sum_probs=101.9
Q ss_pred ceEEEecCCCHHHHHHHHHHH-h-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc
Q psy4398 103 KIILQIGTADPERALEAAKKV-E-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV 178 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~-~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~ 178 (306)
|+-..++..+++++.+.++++ + +||+.|.|+++++ +++...++++++|++++ +++.+....
T Consensus 133 ~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~ 197 (370)
T 1nu5_A 133 PIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGAR---------------TPAQDLEHIRSIVKAVGDRASVRVDVNQ 197 (370)
T ss_dssp EBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGCEEEEECTT
T ss_pred EeeEEecCCCHHHHHHHHHHHHHhCCccEEEEecCCC---------------ChHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 333445556888998888765 5 6999999998874 34566788999998874 778888887
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+|+.+++.++++.+++.|++.|. ++. .+.+++..+++++.+++||++.+.+.+.++++++++.
T Consensus 198 ~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~ 260 (370)
T 1nu5_A 198 GWDEQTASIWIPRLEEAGVELVE-------QPV-PRANFGALRRLTEQNGVAILADESLSSLSSAFELARD 260 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEE-------CCS-CTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcCcceEe-------CCC-CcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHh
Confidence 89999999999999999999874 222 3468999999999999999999999999999999875
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.6e-07 Score=87.20 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEcc------CCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCCh
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINM------GCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNE 182 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~------gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~ 182 (306)
+++++.+.|+++. +||+.|.|+. |++... ...|....++++...++++++|+++ ++++.+....+|+.
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s---~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~ 222 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGV---FLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDL 222 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTC---CCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCccccccC---cccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH
Confidence 8999998888775 5999999996 442111 1112122346678889999999987 57888888888999
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEK 262 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p~ 262 (306)
+++.++++.+++.|+++|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. .-+-.+.
T Consensus 223 ~~ai~~~~~l~~~~i~~iE-------~P~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~----~d~v~ik 290 (403)
T 2ox4_A 223 VSAIQFAKAIEEFNIFFYE-------EIN-TPLNPRLLKEAKKKIDIPLASGERIYSRWGFLPFLEDRS----IDVIQPD 290 (403)
T ss_dssp HHHHHHHHHHGGGCEEEEE-------CCS-CTTSTHHHHHHHHTCCSCEEECTTCCHHHHHHHHHHTTC----CSEECCC
T ss_pred HHHHHHHHHHHhhCCCEEe-------CCC-ChhhHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCC----CCEEecC
Confidence 9999999999999998774 222 345889999999999999999999999999999987532 1111111
Q ss_pred chH-------HHHHHHHHhcCCCCC
Q psy4398 263 LPK-------TILYAHCKYKRFEVP 280 (306)
Q Consensus 263 ~~~-------~~l~~~~~~~g~~~~ 280 (306)
..+ +.+.+..+++|++..
T Consensus 291 ~~~~GGite~~~i~~~A~~~g~~~~ 315 (403)
T 2ox4_A 291 LGTCGGFTEFKKIADMAHIFEVTVQ 315 (403)
T ss_dssp HHHHTHHHHHHHHHHHHHHTTCEEC
T ss_pred ccccCCHHHHHHHHHHHHHcCCEEe
Confidence 111 255566677777733
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.6e-07 Score=85.15 Aligned_cols=125 Identities=10% Similarity=0.167 Sum_probs=104.0
Q ss_pred CceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~ 178 (306)
.|+-.+++..+++++.+.++++. +||+.|.++++++ +++...+.++++|+++ ++++.+....
T Consensus 130 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~d~~~v~avr~a~g~~~~l~vDan~ 194 (366)
T 1tkk_A 130 LETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD---------------DIATDIARIQEIRKRVGSAVKLRLDANQ 194 (366)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 34555677778999988888765 5999999998762 4677788999999987 5788888888
Q ss_pred CCChHHHHHHHHHHHH--cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 179 FHNEADTIALCKRLEA--CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~--~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+|+.+++.++++.+++ .|+++|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.
T Consensus 195 ~~~~~~a~~~~~~l~~~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~ 259 (366)
T 1tkk_A 195 GWRPKEAVTAIRKMEDAGLGIELVE-------QPV-HKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQT 259 (366)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEEEE-------CCS-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCCceEEE-------CCC-CcccHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHh
Confidence 8999999999999999 8887773 233 3568999999999999999999999999999999875
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=8.6e-08 Score=93.28 Aligned_cols=125 Identities=15% Similarity=0.096 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHH
Q psy4398 113 PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKR 191 (306)
Q Consensus 113 ~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~ 191 (306)
.+.+..+...++.|+|.|.++..+|+ ...+.++++++++.. +.|+.++-- . ..+.|+.
T Consensus 255 ~d~~era~aLveaGvd~I~Id~a~g~---------------~~~v~~~i~~i~~~~~~~~vi~g~v--~----t~e~a~~ 313 (511)
T 3usb_A 255 ADAMTRIDALVKASVDAIVLDTAHGH---------------SQGVIDKVKEVRAKYPSLNIIAGNV--A----TAEATKA 313 (511)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCTT---------------SHHHHHHHHHHHHHCTTSEEEEEEE--C----SHHHHHH
T ss_pred cchHHHHHHHHhhccceEEecccccc---------------hhhhhhHHHHHHHhCCCceEEeeee--c----cHHHHHH
Confidence 34455555556679999999977653 345677889998887 478887643 1 3566888
Q ss_pred HHHcCCcEEEEcccCCCC-------CCCCCCcHHHHHHHH---hhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccC
Q psy4398 192 LEACGIIAIGVHGRTKAE-------RPRHRNRIEMIRTLT---QHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHY 258 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~~~-------~~~~p~~~~~v~~i~---~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall 258 (306)
+.++|+|+|.+. ..... ...+.+.+..+.+++ +.+++|||+.|||.+..|+.++++.| |++||+++
T Consensus 314 ~~~aGad~i~vg-~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~ 392 (511)
T 3usb_A 314 LIEAGANVVKVG-IGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFA 392 (511)
T ss_dssp HHHHTCSEEEEC-SSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTT
T ss_pred HHHhCCCEEEEC-CCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHh
Confidence 999999999982 21111 012234666666654 44579999999999999999999875 49999985
Q ss_pred C
Q psy4398 259 P 259 (306)
Q Consensus 259 ~ 259 (306)
.
T Consensus 393 ~ 393 (511)
T 3usb_A 393 G 393 (511)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2e-07 Score=87.74 Aligned_cols=141 Identities=11% Similarity=0.186 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~ 188 (306)
++++|.+.|+++. +||++|+++++. .+++...++++++|+++ ++++.+....+|+.+++.++
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~ 226 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQ---------------PDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRM 226 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCC---------------SCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC---------------CCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHH
Confidence 8999999888775 599999998662 24788889999999987 57888888888999999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCCCc-----
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEKL----- 263 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p~~----- 263 (306)
++.+++.|+++|- ++. .+.+++..+++++.+++||++.+.+.++++++++++.+. +-+-++..
T Consensus 227 ~~~l~~~~i~~iE-------~P~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~----~d~v~ik~~~~GG 294 (393)
T 2og9_A 227 CRIFEPFNLVWIE-------EPL-DAYDHEGHAALALQFDTPIATGEMLTSAAEHGDLIRHRA----ADYLMPDAPRVGG 294 (393)
T ss_dssp HHHHGGGCCSCEE-------CCS-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTC----CSEECCCHHHHTS
T ss_pred HHHHHhhCCCEEE-------CCC-CcccHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHCCC----CCEEeeCccccCC
Confidence 9999999999874 222 346899999999999999999999999999999988532 11111111
Q ss_pred --hHHHHHHHHHhcCCCC
Q psy4398 264 --PKTILYAHCKYKRFEV 279 (306)
Q Consensus 264 --~~~~l~~~~~~~g~~~ 279 (306)
.-+.+.++.+++|++.
T Consensus 295 it~~~~i~~~A~~~gi~~ 312 (393)
T 2og9_A 295 ITPFLKIASLAEHAGLML 312 (393)
T ss_dssp HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHcCCEE
Confidence 1126667777888773
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.67 E-value=9.3e-07 Score=83.09 Aligned_cols=139 Identities=9% Similarity=0.005 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+.++++. +||+.|.|++|+ .+++...++++++|+++ ++++.+....+|+.+++.++
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~ 209 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGH---------------RDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTK 209 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCC---------------SSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCC---------------CCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHH
Confidence 8899988888775 599999999876 24567789999999988 57788888878999999999
Q ss_pred HHHHHH--cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh----hhhccccCCCC
Q psy4398 189 CKRLEA--CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN----CAFLRNHYPVE 261 (306)
Q Consensus 189 a~~l~~--~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~----v~vGrall~~p 261 (306)
++.+++ .++++|- ++. .+.+++..+++++.+ ++||++.+.+ +.++++++++.+ +++. +-
T Consensus 210 ~~~l~~~g~~i~~iE-------qP~-~~~~~~~~~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik-----GG 275 (389)
T 2oz8_A 210 LVAIREAGHDLLWVE-------DPI-LRHDHDGLRTLRHAVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH-----GQ 275 (389)
T ss_dssp HHHHHHTTCCCSEEE-------SCB-CTTCHHHHHHHHHHCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC-----SC
T ss_pred HHHHHhcCCCceEEe-------CCC-CCcCHHHHHHHHhhCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC-----cC
Confidence 999999 7777653 222 345899999999999 9999999999 999999999864 3554 22
Q ss_pred CchHHHHHHHHHhcCCCC
Q psy4398 262 KLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~ 279 (306)
...-+.+.++.+++|++.
T Consensus 276 it~a~~i~~~A~~~gi~~ 293 (389)
T 2oz8_A 276 VTDVMRIGWLAAELGIPI 293 (389)
T ss_dssp HHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHcCCeE
Confidence 233347778889999883
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-08 Score=88.54 Aligned_cols=142 Identities=25% Similarity=0.336 Sum_probs=91.0
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF 179 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 179 (306)
..++++.+.. .+.++.+. .|+++|+++.++|..... ..|....+.++ .++.+++.+++|+.++.+.+
T Consensus 21 ~~~~i~~~~~------~~~a~~~~~~Ga~~i~~~e~v~~~~~~--~~G~~~~~~~~----~i~~i~~~~~~Pvi~~~~~~ 88 (297)
T 2zbt_A 21 KGGVIMDVTT------PEQAVIAEEAGAVAVMALERVPADIRA--QGGVARMSDPK----IIKEIMAAVSIPVMAKVRIG 88 (297)
T ss_dssp TTEEEEEESS------HHHHHHHHHHTCSEEEECSSCHHHHHH--TTCCCCCCCHH----HHHHHHTTCSSCEEEEEETT
T ss_pred hCCeeeeech------HHHHHHHHHCCCcEEEeccccchHHHh--hcCCccCCCHH----HHHHHHHhcCCCeEEEeccC
Confidence 3578887754 45555554 499999997665542111 12334555554 45566777889998877643
Q ss_pred CChHHHHHHHHHHHHcCCcEE---------------------------------------------EEcccCCCCC----
Q psy4398 180 HNEADTIALCKRLEACGIIAI---------------------------------------------GVHGRTKAER---- 210 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i---------------------------------------------~v~~~~~~~~---- 210 (306)
. .+.++.+.++|+|.| .+|+....+.
T Consensus 89 ~-----~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~ 163 (297)
T 2zbt_A 89 H-----FVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEA 163 (297)
T ss_dssp C-----HHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCSSSCCTHHH
T ss_pred C-----HHHHHHHHHCCCCEEeeeCCCChHHHHHHHHHhCCCceEEeecCCHHHHHHHHHcCCCEEEEcccccCcchHHH
Confidence 1 233444444555555 4332100000
Q ss_pred ----------------C----------CCCCcHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 211 ----------------P----------RHRNRIEMIRTLTQHLKIPVI--ANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 211 ----------------~----------~~p~~~~~v~~i~~~~~ipvi--a~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
+ ..+.+++.++++++.+++|++ +.|||.|.+++.++++.| +++|++++.
T Consensus 164 ~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~ 243 (297)
T 2zbt_A 164 VRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFK 243 (297)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGG
T ss_pred HhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhC
Confidence 0 013467889999998899998 999999999999999875 499999995
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=98.66 E-value=8.3e-07 Score=84.59 Aligned_cols=152 Identities=11% Similarity=0.135 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCcccc-ccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAA-LLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~-l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
.+++++++.++.+. +||..|-+++++|.... .|.. ..++++...++++++|+++ ++++.+....+|+.+++.
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~----~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~ 220 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTLR----GGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAI 220 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTT----CCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccc----cCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHH
Confidence 68899988888664 59999999999986421 2221 1235677888999999988 478888888789999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCCCchH-
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEKLPK- 265 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p~~~~- 265 (306)
++++.|++.|+++|. ++ ..+.+++..+++++.+++||++.+.+.+..+++++++.+. .-+-+|...+
T Consensus 221 ~~~~~Le~~~i~~iE-------eP-~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~g~----~D~v~~d~~~~ 288 (433)
T 3rcy_A 221 RLGQAIEPYSPLWYE-------EP-VPPDNVGAMAQVARAVRIPVATGERLTTKAEFAPVLREGA----AAILQPALGRA 288 (433)
T ss_dssp HHHHHHGGGCCSEEE-------CC-SCTTCHHHHHHHHHHSSSCEEECTTCCSHHHHHHHHHTTC----CSEECCCHHHH
T ss_pred HHHHHhhhcCCCEEE-------CC-CChhhHHHHHHHHhccCCCEEecCCCCCHHHHHHHHHcCC----CCEEEeCchhc
Confidence 999999999999985 22 2345889999999999999999999999999999987532 1112222222
Q ss_pred ------HHHHHHHHhcCCC
Q psy4398 266 ------TILYAHCKYKRFE 278 (306)
Q Consensus 266 ------~~l~~~~~~~g~~ 278 (306)
+.+.+..+++|++
T Consensus 289 GGit~~~kia~lA~~~gv~ 307 (433)
T 3rcy_A 289 GGIWEMKKVAAMAEVYNAQ 307 (433)
T ss_dssp THHHHHHHHHHHHHTTTCE
T ss_pred CCHHHHHHHHHHHHHcCCE
Confidence 2556667777876
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-06 Score=83.21 Aligned_cols=127 Identities=14% Similarity=0.098 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHH
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~ 188 (306)
|..++.+..+...+++|+|.|-|....- ..+.+.+.++.+++.. +++|.+.-- - +.+-
T Consensus 277 gv~~d~~eR~~aLv~AGvD~iviD~ahG---------------hs~~v~~~i~~ik~~~p~~~viaGNV--a----T~e~ 335 (556)
T 4af0_A 277 GTRPGDKDRLKLLAEAGLDVVVLDSSQG---------------NSVYQIEFIKWIKQTYPKIDVIAGNV--V----TREQ 335 (556)
T ss_dssp CSSHHHHHHHHHHHHTTCCEEEECCSCC---------------CSHHHHHHHHHHHHHCTTSEEEEEEE--C----SHHH
T ss_pred ccCccHHHHHHHHHhcCCcEEEEecccc---------------ccHHHHHHHHHHHhhCCcceEEeccc--c----CHHH
Confidence 4556777777777788999999975431 2355678889998876 567766544 2 3566
Q ss_pred HHHHHHcCCcEEEEc------ccCCCCCCCCCCcHHHHHH---HHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccc
Q psy4398 189 CKRLEACGIIAIGVH------GRTKAERPRHRNRIEMIRT---LTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRN 256 (306)
Q Consensus 189 a~~l~~~G~d~i~v~------~~~~~~~~~~p~~~~~v~~---i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGra 256 (306)
++.|.++|+|+|.|- +.++...-.+-+.+..+.+ .++.+++|||+-|||...-|+-+++.+|+ |+|+.
T Consensus 336 a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsl 415 (556)
T 4af0_A 336 AAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMGGL 415 (556)
T ss_dssp HHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred HHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEchh
Confidence 777888999999873 1222222223334544444 44455899999999999999999999865 88876
Q ss_pred c
Q psy4398 257 H 257 (306)
Q Consensus 257 l 257 (306)
|
T Consensus 416 l 416 (556)
T 4af0_A 416 L 416 (556)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=9e-08 Score=101.49 Aligned_cols=131 Identities=11% Similarity=-0.005 Sum_probs=94.3
Q ss_pred ChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC--------CCCCcHHHHHHH
Q psy4398 153 TPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP--------RHRNRIEMIRTL 223 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--------~~p~~~~~v~~i 223 (306)
+++.+.++++.+++.. +.||.||+-.. ......|+.++++|+|+|++++....... .+.+....+.++
T Consensus 976 s~edl~~~I~~Lk~~~~~~PV~VKlv~~---~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev 1052 (1479)
T 1ea0_A 976 SIEDLAQLIYDLKQINPDAKVTVKLVSR---SGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEV 1052 (1479)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEEECC---TTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcCC---CChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHH
Confidence 4677889999999988 88999999843 23455788899999999999876422111 122344566677
Q ss_pred HhhC-------CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC----------------------CCC---------
Q psy4398 224 TQHL-------KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP----------------------VEK--------- 262 (306)
Q Consensus 224 ~~~~-------~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~----------------------~p~--------- 262 (306)
++.+ ++|||+.|||.+..|+.+++..|+ ++||+++. ||.
T Consensus 1053 ~~al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a~gc~~~r~Ch~~~CP~Gvatqdp~l~~~~~gg~ 1132 (1479)
T 1ea0_A 1053 HQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTP 1132 (1479)
T ss_dssp HHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCH
T ss_pred HHHHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHHHHHHHHHhhccCCCCCceeEEeCHHHHhhcCCch
Confidence 6654 699999999999999999998764 88887643 232
Q ss_pred ------chH--HHHHHHHHhcCCC-CCcceehh
Q psy4398 263 ------LPK--TILYAHCKYKRFE-VPKYETVQ 286 (306)
Q Consensus 263 ------~~~--~~l~~~~~~~g~~-~~~~~~~~ 286 (306)
+.. .+|+++|...|+. +.++.++.
T Consensus 1133 e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~g~~ 1165 (1479)
T 1ea0_A 1133 EKVVNLFTFLAEEVREILAGLGFRSLNEVIGRT 1165 (1479)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCSGGGTTCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCch
Confidence 111 2999999999976 55554443
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-07 Score=87.21 Aligned_cols=151 Identities=9% Similarity=0.033 Sum_probs=115.8
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEec
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIR 177 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir 177 (306)
..|+..++...+++++++.++.+. .||..|.+++|| +++.-.+.++++|+++ ++++.++..
T Consensus 134 ~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiK~G~----------------~~~~d~~~v~avR~a~g~~~~l~vDan 197 (378)
T 3eez_A 134 PRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGG----------------DVERDIARIRDVEDIREPGEIVLYDVN 197 (378)
T ss_dssp CEEBBCCBCSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHTTSCCTTCEEEEECT
T ss_pred eEEEEEEecCCCHHHHHHHHHHHHhCCCCEEEeccCC----------------CHHHHHHHHHHHHHHcCCCceEEEECC
Confidence 456777788889999998888665 599999999886 3556678899999998 578999999
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----hh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----AF 253 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~v 253 (306)
.+|+.+++.++++.+++.|+ +|. ++. + +++..+++++.+++||++.+.+.+.++++++++.+. ++
T Consensus 198 ~~~~~~~a~~~~~~l~~~~i-~iE-------qP~--~-~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~i 266 (378)
T 3eez_A 198 RGWTRQQALRVMRATEDLHV-MFE-------QPG--E-TLDDIAAIRPLHSAPVSVDECLVTLQDAARVARDGLAEVFGI 266 (378)
T ss_dssp TCCCHHHHHHHHHHTGGGTC-CEE-------CCS--S-SHHHHHHTGGGCCCCEEECTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred CCCCHHHHHHHHHHhccCCe-EEe-------cCC--C-CHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCEEEe
Confidence 89999999999999999998 663 222 2 788999999999999999999999999999997532 22
Q ss_pred ccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 254 LRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 254 Grall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
-..-.-+ ...-..+.++.+++|++.
T Consensus 267 k~~~~GG-it~~~~ia~~A~~~g~~~ 291 (378)
T 3eez_A 267 KLNRVGG-LTRAARMRDIALTHGIDM 291 (378)
T ss_dssp EHHHHTS-HHHHHHHHHHHHHTTCEE
T ss_pred CchhcCC-HHHHHHHHHHHHHcCCEE
Confidence 1111111 112225667777778773
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.7e-07 Score=85.35 Aligned_cols=124 Identities=14% Similarity=0.195 Sum_probs=102.4
Q ss_pred CceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~ 178 (306)
.|+...++..+++++.+.++++. +||+.|.+++++ +++...++++++|+.+ ++++.+....
T Consensus 135 vp~~~~~g~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~~e~v~avR~a~g~d~~l~vDan~ 198 (397)
T 2qde_A 135 IPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGG----------------PLKADIAMVAEVRRAVGDDVDLFIDING 198 (397)
T ss_dssp EEBCEECCCSCHHHHHHHHHHHHHHTCSCEEEECCS----------------CHHHHHHHHHHHHHHHCTTSCEEEECTT
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhhhhheeecccC----------------CHHHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 45554554468999988888775 599999998762 4577788999999987 5788888888
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+|+.+++.++++.+++.|++.|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.
T Consensus 199 ~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ 261 (397)
T 2qde_A 199 AWTYDQALTTIRALEKYNLSKIE-------QPL-PAWDLDGMARLRGKVATPIYADESAQELHDLLAIINK 261 (397)
T ss_dssp CCCHHHHHHHHHHHGGGCCSCEE-------CCS-CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCEEE-------CCC-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHc
Confidence 89999999999999999999874 222 3468999999999999999999999999999999875
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.2e-07 Score=85.27 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEcc------CCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCCh
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINM------GCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNE 182 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~------gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~ 182 (306)
++++|.+.|+++. +||+.|.++. |+... ....|....++++...++++++|+++ ++++.+....+|+.
T Consensus 152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~---s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~ 228 (407)
T 2o56_A 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQ---QNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDT 228 (407)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSC---SCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccCCcCcccc---CcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 7999999888775 5999999986 43210 01111111346678889999999987 57888888878999
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE- 261 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p- 261 (306)
+++.++++.+++.|+++|- ++ ..+.+++..+++++.+++||++.+.+.+.++++++++.+. ...+.-++
T Consensus 229 ~~a~~~~~~l~~~~i~~iE-------~P-~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~--~d~v~ik~~ 298 (407)
T 2o56_A 229 TSAIQFGRMIEELGIFYYE-------EP-VMPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGS--LSVIQPDIC 298 (407)
T ss_dssp HHHHHHHHHHGGGCCSCEE-------CS-SCSSSHHHHHHHHHHCCSCEEECTTCCHHHHHHHHHHTTC--CSEECCCTT
T ss_pred HHHHHHHHHHHhcCCCEEe-------CC-CChhhHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCC--CCEEecCcc
Confidence 9999999999999999874 22 2346899999999999999999999999999999987532 01111122
Q ss_pred Cc----hHHHHHHHHHhcCCCC
Q psy4398 262 KL----PKTILYAHCKYKRFEV 279 (306)
Q Consensus 262 ~~----~~~~l~~~~~~~g~~~ 279 (306)
.+ .-+.+.+..+++|++.
T Consensus 299 ~~GGite~~~i~~~A~~~g~~~ 320 (407)
T 2o56_A 299 TCGGITEVKKICDMAHVYDKTV 320 (407)
T ss_dssp TTTHHHHHHHHHHHHHTTTCEE
T ss_pred ccCCHHHHHHHHHHHHHcCCeE
Confidence 11 1126666777778773
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-06 Score=81.86 Aligned_cols=142 Identities=8% Similarity=-0.041 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+.++++. +||+.|.|+++++ +++...++++++|+++ ++++.+....+|+.+++.++
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~ 229 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGGA---------------PIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAY 229 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSSS---------------CHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC---------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence 7889988888765 5999999998762 3577788999999887 47788888878999999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh----hhhccccCCCC-Cc
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN----CAFLRNHYPVE-KL 263 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~----v~vGrall~~p-~~ 263 (306)
++.+++.|+++|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+ . ...+.-++ .+
T Consensus 230 ~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~--~d~v~ik~~~~ 299 (392)
T 1tzz_A 230 AKMLRDYPLFWYE-------EVG-DPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPD--RDWLQFDCALS 299 (392)
T ss_dssp HHHHTTSCCSEEE-------CCS-CTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTT--TCEECCCTTTT
T ss_pred HHHHHHcCCCeec-------CCC-ChhhHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCccC--CcEEEECcccc
Confidence 9999999999874 222 24689999999999999999999999999999998864 2 11122233 22
Q ss_pred ----hHHHHHHHHHhcCCC
Q psy4398 264 ----PKTILYAHCKYKRFE 278 (306)
Q Consensus 264 ----~~~~l~~~~~~~g~~ 278 (306)
.-+.+.++.+++|++
T Consensus 300 GGit~~~~i~~~A~~~gi~ 318 (392)
T 1tzz_A 300 YGLCEYQRTLEVLKTHGWS 318 (392)
T ss_dssp TCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCCC
Confidence 223777888999988
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-07 Score=81.77 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=97.4
Q ss_pred ceEEEecCCCH--HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccc----------cCChHHHHHHHHHHHhccc
Q psy4398 103 KIILQIGTADP--ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAAL----------LSTPDIACNILTTLISNLS 169 (306)
Q Consensus 103 p~ivql~g~~~--~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l----------~~~~~~~~eiv~~v~~~~~ 169 (306)
.++..|...++ +++.+.++.+.+ |+|.|||+..++.+.. | |..+ .-+++...++++++++.++
T Consensus 19 ~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~--d--g~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~ 94 (262)
T 1rd5_A 19 AFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYI--D--GPIIQASVARALASGTTMDAVLEMLREVTPELS 94 (262)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTT--S--CHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCS
T ss_pred eEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCccc--C--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 46667655554 888888887765 9999999876643211 1 1111 0267888899999999889
Q ss_pred ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEccc--------------------------CC-----------C----
Q psy4398 170 IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGR--------------------------TK-----------A---- 208 (306)
Q Consensus 170 ~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~--------------------------~~-----------~---- 208 (306)
+|+.+... ++.... ...+.+.++|+|++++++. +. .
T Consensus 95 ~Pv~~m~~--~~~~~~-~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~ 171 (262)
T 1rd5_A 95 CPVVLLSY--YKPIMF-RSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVY 171 (262)
T ss_dssp SCEEEECC--SHHHHS-CCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEE
T ss_pred CCEEEEec--CcHHHH-HHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEE
Confidence 99887543 221110 0011245556665554321 10 0
Q ss_pred ----CCCCC------CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 209 ----ERPRH------RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 209 ----~~~~~------p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
..+.+ +..+++++++++.+++||++.|||+|.+++.++++.| +.+|++++.
T Consensus 172 ~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~ 235 (262)
T 1rd5_A 172 LVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR 235 (262)
T ss_dssp EECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred EecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 00011 2245688999999999999999999999999998875 489999874
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-07 Score=100.26 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=140.1
Q ss_pred ccccccccCCceEEccCCC-CCCHHHHHHHHHcCC-CEEEe-cceechhhhhhhhhhhcccccccccCCCCCceeeecCC
Q psy4398 22 ANQANINYSNKIILAPMVR-MNTLPFRLLALDYGA-DLVYS-EELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCP 98 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~-~t~~~~r~~~~~~G~-g~~~t-e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (306)
+++..+.=+.||++|||.. .++..+...+.++|. |.+-. .+.+++.+....+....+ .
T Consensus 581 t~~t~llg~~PIi~~gM~~~~~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~~------------------t- 641 (2051)
T 2uv8_G 581 TKFSKLIGRPPLLVPGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVSQ------------------I- 641 (2051)
T ss_dssp CHHHHHHSSCSEEECCCHHHHTCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHHH------------------S-
T ss_pred HHHHHhhCccceecCCCccccccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHHh------------------c-
Confidence 4444444468999999994 458888887777774 55533 233333333222221111 1
Q ss_pred CCCCceEEEecCCCHHHH---HHHHHHH-hcCCCE--EEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 99 REKNKIILQIGTADPERA---LEAAKKV-EHDVAA--IDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~---~~aa~~~-~~g~d~--veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
..+.|+.+++.-.++..+ .+..+.+ ++|... |.+..|.|. .+...++++.+ ++++
T Consensus 642 ~~~~~~gvN~~~~~~~~~~~~~~~~~~~~~~gv~i~~v~~~ag~p~---------------~~~~~~~i~~l----G~~v 702 (2051)
T 2uv8_G 642 EKGSTFGINLIYVNPFMLQWGIPLIKELRSKGYPIQFLTIGAGVPS---------------LEVASEYIETL----GLKY 702 (2051)
T ss_dssp CTTCCEEEEEETTCTTHHHHHHHHHHHHHHTTCSEEEEEEESSCCC---------------HHHHHHHHHHS----CCSC
T ss_pred CCCCceEEEEeecChhhhhhhHHHHHHHHHcCCCcceEEecCCCCc---------------hhhHHHHHHHc----CCEE
Confidence 125689999876555311 2444544 458665 888777665 22333444443 7777
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEE---EEcccCCCCCCCCC-----CcHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAI---GVHGRTKAERPRHR-----NRIEMIRTLTQHLKIPVIANGGSKEIVDYG 244 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i---~v~~~~~~~~~~~p-----~~~~~v~~i~~~~~ipvia~GGI~s~~~~~ 244 (306)
..... .....++.+...+++|+|.+ ++.|....+ +.+. ..+.++.+|++.++||||+.|||.|.+.+.
T Consensus 703 i~~~~---~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGG-H~g~~d~~~~~l~l~~~v~~~~~ipviaaGGi~dg~~~~ 778 (2051)
T 2uv8_G 703 LGLKP---GSIDAISQVINIAKAHPNFPIALQWTGGRGGG-HHSFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSADDTY 778 (2051)
T ss_dssp EEECC---CSHHHHHHHHHHHHHSTTSCEEEEECCSSCSE-ECCSCCSSHHHHHHHHHHTTCTTBCCEEESSCCSHHHHT
T ss_pred EEecC---chHHHHHHHHHHHHhCCCceeEEEEEccCcCC-CCCcccccccHHHHHHHHHhcCCceEEEeCCCCCHHHHH
Confidence 65443 24567788888999999994 455554333 2222 134568999999999999999999999999
Q ss_pred HHH-----------Hh---hhhhccccCCCCCc-hHHHHHHH-HHhcCCCCCcceehhhccceeeEEEEc
Q psy4398 245 GVF-----------SL---NCAFLRNHYPVEKL-PKTILYAH-CKYKRFEVPKYETVQYEKLFRSLVTVN 298 (306)
Q Consensus 245 ~~l-----------~~---~v~vGrall~~p~~-~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~ 298 (306)
.++ .+ |++||+.++.=.+. .....++. ++..+.+-..|. +.+.+.-.++.+.|
T Consensus 779 aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~Ea~~~~~~K~~iv~a~~~d~~~w~-~~~~~~~gG~~~~~ 847 (2051)
T 2uv8_G 779 PYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEVKTSPDAKKCIAACTGVPDDKWE-QTYKKPTGGIVTVR 847 (2051)
T ss_dssp HHHHTCGGGTTTCCCCCCSCEECSGGGTTSTTSCCCHHHHHHHHTCCCCCGGGGG-GGGTSCCSSEEEEE
T ss_pred HHHccccccccCccCCCCceeeechHHHhCcccccCHHHHHHHHhCCCCcccchh-hccccCcCcEEEEe
Confidence 988 33 56999999875422 22345554 444443322222 22433344444444
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.6e-07 Score=84.39 Aligned_cols=143 Identities=14% Similarity=0.125 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~ 188 (306)
+++++.+.++++. +||+.|.+++|. .+++...++++++|+++ ++++.+....+|+.+++.++
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~ 239 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQ---------------PNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRM 239 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCC---------------SCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCC---------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence 7999988888775 599999998763 24778889999999987 57888888888999999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-----Cc
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-----KL 263 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-----~~ 263 (306)
++.+++.|++.|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. ...+.-++ ..
T Consensus 240 ~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~--~d~v~ik~~~~GGit 309 (398)
T 2pp0_A 240 GRKMEQFNLIWIE-------EPL-DAYDIEGHAQLAAALDTPIATGEMLTSFREHEQLILGNA--SDFVQPDAPRVGGIS 309 (398)
T ss_dssp HHHHGGGTCSCEE-------CCS-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTC--CSEECCCHHHHTSHH
T ss_pred HHHHHHcCCceee-------CCC-ChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCC--CCEEEeCccccCCHH
Confidence 9999999999874 222 346899999999999999999999999999999987532 00111111 01
Q ss_pred hHHHHHHHHHhcCCCC
Q psy4398 264 PKTILYAHCKYKRFEV 279 (306)
Q Consensus 264 ~~~~l~~~~~~~g~~~ 279 (306)
.-+.+.++.+++|++.
T Consensus 310 e~~~i~~~A~~~gi~~ 325 (398)
T 2pp0_A 310 PFLKIMDLAAKHGRKL 325 (398)
T ss_dssp HHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHcCCeE
Confidence 1126667777888773
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-06 Score=82.62 Aligned_cols=142 Identities=14% Similarity=0.133 Sum_probs=109.1
Q ss_pred CCH-HHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 111 ADP-ERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~-~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
.++ +++.+.|+++. +||+.|.+++++ +++...++++++|+++ ++++.+....+|+.+++.
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai 246 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGD----------------AARVDIERVRHVRKVLGDEVDILTDANTAYTMADAR 246 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHH
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 567 88888888765 599999998764 4677788999999987 577888887789999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-C--
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-K-- 262 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~-- 262 (306)
++++.+++.|++.|- ++. .+.+++..+++++.++ +||++.+.+.+.++++++++.+. ...+.-++ .
T Consensus 247 ~~~~~L~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~--~d~v~ik~~~~G 316 (428)
T 3bjs_A 247 RVLPVLAEIQAGWLE-------EPF-ACNDFASYREVAKITPLVPIAAGENHYTRFEFGQMLDAGA--VQVWQPDLSKCG 316 (428)
T ss_dssp HHHHHHHHTTCSCEE-------CCS-CTTCHHHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTCC--EEEECCBTTTSS
T ss_pred HHHHHHHhcCCCEEE-------CCC-CccCHHHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCC--CCEEEeCccccC
Confidence 999999999999874 222 3458999999999998 99999999999999999987532 00111122 1
Q ss_pred --chHHHHHHHHHhcCCC
Q psy4398 263 --LPKTILYAHCKYKRFE 278 (306)
Q Consensus 263 --~~~~~l~~~~~~~g~~ 278 (306)
..-+.+.+..+++|++
T Consensus 317 Gitea~~ia~~A~~~gi~ 334 (428)
T 3bjs_A 317 GITEGIRIAAMASAYRIP 334 (428)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 1223666777788877
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=82.51 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=119.4
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEec
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIR 177 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir 177 (306)
..|+-..+++.+++++++.++.+. +||..+-+ .|+|.... .....+++.-.++++++|+++ ++++.+...
T Consensus 114 ~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~------~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN 186 (405)
T 3rr1_A 114 KMRTYSWVGGDRPADVIAGMKALQAGGFDHFKL-NGCEEMGI------IDTSRAVDAAVARVAEIRSAFGNTVEFGLDFH 186 (405)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSC------BCSHHHHHHHHHHHHHHHHTTGGGSEEEEECC
T ss_pred ceeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEE-ecCCcccc------cccchhHHHHHHHHHHHHHHhCCCceEEEECC
Confidence 467777788889999998888664 59999999 88764211 011224566678999999998 578888888
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhcccc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNH 257 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGral 257 (306)
.+|+.+++.++++.|++.|+++|. ++. .+.+++..+++++.+++||++.+.+.+..+++++++.+. ...+
T Consensus 187 ~~~~~~~A~~~~~~L~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~iPIa~dE~i~~~~~~~~~l~~~a--~d~v 256 (405)
T 3rr1_A 187 GRVSAPMAKVLIKELEPYRPLFIE-------EPV-LAEQAETYARLAAHTHLPIAAGERMFSRFDFKRVLEAGG--VSIL 256 (405)
T ss_dssp SCBCHHHHHHHHHHHGGGCCSCEE-------CSS-CCSSTHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHCC--CSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEE-------CCC-CcccHHHHHHHHhcCCCCEEecCCcCCHHHHHHHHHHhC--CCeE
Confidence 889999999999999999999885 222 345789999999999999999999999999999987532 0001
Q ss_pred CCCC-Cc----hHHHHHHHHHhcCCCC
Q psy4398 258 YPVE-KL----PKTILYAHCKYKRFEV 279 (306)
Q Consensus 258 l~~p-~~----~~~~l~~~~~~~g~~~ 279 (306)
.-++ .+ .-+.+.+..+++|++.
T Consensus 257 ~~d~~~~GGitea~kia~lA~~~gi~v 283 (405)
T 3rr1_A 257 QPDLSHAGGITECVKIAAMAEAYDVAL 283 (405)
T ss_dssp CCBTTTTTHHHHHHHHHHHHHTTTCEE
T ss_pred EEChhhcCCHHHHHHHHHHHHHcCCEE
Confidence 1122 11 1125666777778773
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=98.55 E-value=7.4e-07 Score=83.59 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=101.5
Q ss_pred CceEEEecC--CCH---HHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEE
Q psy4398 102 NKIILQIGT--ADP---ERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVS 173 (306)
Q Consensus 102 ~p~ivql~g--~~~---~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~ 173 (306)
.|+...++. .++ +++.+.++++. +||+.|.+++++ .+++...++++++|+++ ++++.
T Consensus 124 vp~~~~~g~~~~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~d~e~v~avR~a~G~d~~l~ 188 (382)
T 2gdq_A 124 IPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGG---------------TSFKEDVRHINALQHTAGSSITMI 188 (382)
T ss_dssp EEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHHCTTSEEE
T ss_pred eeEEEEecccCCCcccHHHHHHHHHHHHHcCCCEEEEcCCC---------------CCHHHHHHHHHHHHHhhCCCCEEE
Confidence 344444422 577 88988888775 599999999775 24677889999999988 57888
Q ss_pred EEeccCCChHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 174 CKIRVFHNEADTIALCKRLEAC-GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 174 vKir~g~~~~~~~~~a~~l~~~-G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+....+|+.+++.++++.+++. |+++|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.
T Consensus 189 vDan~~~~~~~a~~~~~~l~~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ 257 (382)
T 2gdq_A 189 LDANQSYDAAAAFKWERYFSEWTNIGWLE-------EPL-PFDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQ 257 (382)
T ss_dssp EECTTCCCHHHHHTTHHHHTTCSCEEEEE-------CCS-CSSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhhccCCeEEE-------CCC-CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHc
Confidence 8888889999999999999999 888763 222 3458999999999999999999999999999999875
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.52 E-value=9.3e-06 Score=71.40 Aligned_cols=203 Identities=12% Similarity=0.045 Sum_probs=128.6
Q ss_pred ccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCC
Q psy4398 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREK 101 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (306)
.+|++.+|..|+++-.+--.+...++......|+.++..-+-..+.. ...... +.+.++ +
T Consensus 4 l~i~~~~~~srl~~Gtgky~~~~~~~~ai~asg~eivtva~rR~~~~---~~~~~~---------------~~~~i~--~ 63 (268)
T 2htm_A 4 WKVGPVELKSRLILGSGKYEDFGVMREAIAAAKAEVVTVSVRRVELK---APGHVG---------------LLEALE--G 63 (268)
T ss_dssp EEETTEEECCSEEEECSSCSCHHHHHHHHHHTTCSEEEEEEEECC----------C---------------HHHHTT--T
T ss_pred eEECCEEeecceEEecCCCCCHHHHHHHHHHhCCCEEEEEccccCCC---CCCccc---------------HHHHHh--h
Confidence 67899999999999888744444566666788988776653211100 000011 122232 4
Q ss_pred CceEEEec-CCCHHHHHHHHHHHhc--CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 102 NKIILQIG-TADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~-g~~~~~~~~aa~~~~~--g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
.++..+-. ..+.++...+++.+.+ |-+-|-|..-.- .. .+.-|+..+.+-.+.+.+. ++.+...+.
T Consensus 64 ~~~lpntaG~~taeeAv~~a~lare~~gt~~iKlEvi~d------~~---~l~pD~~~tv~aa~~L~k~-Gf~Vlpy~~- 132 (268)
T 2htm_A 64 VRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLEVIPD------PT---YLLPDPLETLKAAERLIEE-DFLVLPYMG- 132 (268)
T ss_dssp SEEEEBCTTCCSHHHHHHHHHHHHHHHCCSEEBCCCCSC------TT---TTCCCHHHHHHHHHHHHHT-TCEECCEEC-
T ss_pred hhccCcccCCCCHHHHHHHHHhhhHhcCcceeeeeeccC------cc---ccCcCHHHHHHHHHHHHHC-CCEEeeccC-
Confidence 45666654 4789999999987765 777765543321 11 2445555555555544332 433333343
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHh-hCC-CcEEEecCCCCHHHHHHHHHhh---hhh
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQ-HLK-IPVIANGGSKEIVDYGGVFSLN---CAF 253 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~-~~~-ipvia~GGI~s~~~~~~~l~~~---v~v 253 (306)
.+ ..+|+++++.|++.|.--+.... .-.+..+.++++++++ ..+ +|||+-|||.+++|+..+++.| |.+
T Consensus 133 -~D----~~~ak~l~~~G~~aVmPlg~pIG-sG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlV 206 (268)
T 2htm_A 133 -PD----LVLAKRLAALGTATVMPLAAPIG-SGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLV 206 (268)
T ss_dssp -SC----HHHHHHHHHHTCSCBEEBSSSTT-TCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEE
T ss_pred -CC----HHHHHHHHhcCCCEEEecCccCc-CCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 33 38899999999999943232221 1223346678999998 568 9999999999999999999985 599
Q ss_pred ccccCC--CC
Q psy4398 254 LRNHYP--VE 261 (306)
Q Consensus 254 Grall~--~p 261 (306)
|+++.. ||
T Consensus 207 gSAI~~a~dP 216 (268)
T 2htm_A 207 NTAIAEAQDP 216 (268)
T ss_dssp SHHHHTSSSH
T ss_pred ChHHhCCCCH
Confidence 999875 45
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=7e-06 Score=77.23 Aligned_cols=158 Identities=14% Similarity=0.071 Sum_probs=121.3
Q ss_pred CCceEEEec---CCCHHHHHHHH-HHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEE
Q psy4398 101 KNKIILQIG---TADPERALEAA-KKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVS 173 (306)
Q Consensus 101 ~~p~ivql~---g~~~~~~~~aa-~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~ 173 (306)
..|+...+. ..+++++.+.+ +.+ ++||..+-+++|++.+. ...+++.-.+.++++|+.+ ++++.
T Consensus 125 ~v~~y~s~~g~~~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~---------~~~~~~~d~~~v~avR~a~g~~~~l~ 195 (393)
T 4dwd_A 125 RLPCYSSIGGNAARSVDEVVREVARRVEAEQPAAVKIRWDGDRTR---------CDVDIPGDIAKARAVRELLGPDAVIG 195 (393)
T ss_dssp EEEEEEEECCCSSSCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC---------CSCCHHHHHHHHHHHHHHHCTTCCEE
T ss_pred ceeeEEecCccCCCCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc---------cccCHHHHHHHHHHHHHHhCCCCeEE
Confidence 456777763 36788888877 655 45999999999986531 2346778888999999987 57899
Q ss_pred EEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhh
Q psy4398 174 CKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAF 253 (306)
Q Consensus 174 vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~v 253 (306)
+....+|+.+++.++++.|++.|+++|- ++. .+.+++..+++++.+++||++...+.+.++++++++.++
T Consensus 196 vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~-- 265 (393)
T 4dwd_A 196 FDANNGYSVGGAIRVGRALEDLGYSWFE-------EPV-QHYHVGAMGEVAQRLDITVSAGEQTYTLQALKDLILSGV-- 265 (393)
T ss_dssp EECTTCCCHHHHHHHHHHHHHTTCSEEE-------CCS-CTTCHHHHHHHHHHCSSEEEBCTTCCSHHHHHHHHHHTC--
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCEEE-------CCC-CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCC--
Confidence 9988899999999999999999999885 222 345889999999999999999999999999999887541
Q ss_pred ccccCCCC-CchH----HHHHHHHHhcCCC
Q psy4398 254 LRNHYPVE-KLPK----TILYAHCKYKRFE 278 (306)
Q Consensus 254 Grall~~p-~~~~----~~l~~~~~~~g~~ 278 (306)
..+.-++ .+.- +.+.+..+++|++
T Consensus 266 -d~v~~k~~~~GGit~~~~ia~~A~~~gi~ 294 (393)
T 4dwd_A 266 -RMVQPDIVKMGGITGMMQCAALAHAHGVE 294 (393)
T ss_dssp -CEECCCTTTTTHHHHHHHHHHHHHHHTCE
T ss_pred -CEEEeCccccCCHHHHHHHHHHHHHcCCE
Confidence 2222233 2211 2667778888887
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-06 Score=82.43 Aligned_cols=168 Identities=9% Similarity=0.022 Sum_probs=119.3
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccc------cCCcccccc--CChHHHHHHHHHHHhcc--c
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSL------TGGMGAALL--STPDIACNILTTLISNL--S 169 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~------~~~~G~~l~--~~~~~~~eiv~~v~~~~--~ 169 (306)
..|+...+.+.+++++.+.++.+. +||..+-+.+|++..... ...-|..+. +.++...++++++|+++ +
T Consensus 122 ~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d 201 (401)
T 3sbf_A 122 AIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQ 201 (401)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred eeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 456666777889999988887664 699999999987531100 001121111 12567788899999988 5
Q ss_pred ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 170 IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 170 ~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+++.+....+|+.+++.++++.+++.|+++|. ++. .+.+++..+++++.+++||++.+.+.+.++++++++.
T Consensus 202 ~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ 273 (401)
T 3sbf_A 202 FHILHDVHERLFPNQAIQFAKEVEQYKPYFIE-------DIL-PPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIAN 273 (401)
T ss_dssp SEEEEECTTCSCHHHHHHHHHHHGGGCCSCEE-------CSS-CTTCGGGHHHHHTTCCCCEEECTTCCSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CCC-ChhHHHHHHHHHhhCCCCEEeCCccCCHHHHHHHHhc
Confidence 78999988899999999999999999998885 222 2457888999999999999999999999999999875
Q ss_pred hhhhccccCCCC-C----chHHHHHHHHHhcCCC
Q psy4398 250 NCAFLRNHYPVE-K----LPKTILYAHCKYKRFE 278 (306)
Q Consensus 250 ~v~vGrall~~p-~----~~~~~l~~~~~~~g~~ 278 (306)
+. ...+.-++ . ..-+.+.+..+++|++
T Consensus 274 ~~--~d~v~~k~~~~GGit~~~kia~~A~~~gi~ 305 (401)
T 3sbf_A 274 RR--IDFIRCHVSQIGGITPALKLGHLCQNFGVR 305 (401)
T ss_dssp TC--CSEECCCGGGGTSHHHHHHHHHHHHHHTCE
T ss_pred CC--CCEEecCccccCCHHHHHHHHHHHHHcCCE
Confidence 32 00011111 1 1112566777777876
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.3e-07 Score=83.01 Aligned_cols=144 Identities=12% Similarity=0.166 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCC-hHHHHHH
Q psy4398 113 PERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHN-EADTIAL 188 (306)
Q Consensus 113 ~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~-~~~~~~~ 188 (306)
++++++.++.+. +||+.|.|++|++. .+++.-.+.++++|+++ +.++.+....+|+ .+++.++
T Consensus 147 ~e~~~~~a~~~~~~Gf~~iKlk~g~~g-------------~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~ 213 (374)
T 3sjn_A 147 PEDNVAIVQGLKDQGFSSIKFGGGVMG-------------DDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMM 213 (374)
T ss_dssp GGGGHHHHHHHHTTTCSEEEEECTTTT-------------SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeccCCCC-------------CCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHH
Confidence 488888888765 59999999998742 24778888999999987 5788898888899 9999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-Cc----
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-KL---- 263 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~~---- 263 (306)
++.+++.|+++|- ++ ..+.+++..+++++.+++||++.+.+.+.++++++++.+. ...+.-++ .+
T Consensus 214 ~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~--~d~v~~k~~~~GGit 283 (374)
T 3sjn_A 214 AKRLEEFNLNWIE-------EP-VLADSLISYEKLSRQVSQKIAGGESLTTRYEFQEFITKSN--ADIVQPDITRCGGIT 283 (374)
T ss_dssp HHHSGGGCCSEEE-------CS-SCTTCHHHHHHHHHHCSSEEEECTTCCHHHHHHHHHHHHC--CSEECCBTTTSSHHH
T ss_pred HHHhhhcCceEEE-------CC-CCcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCC--CCEEEeCccccCCHH
Confidence 9999999999885 22 2245889999999999999999999999999999987532 00111122 12
Q ss_pred hHHHHHHHHHhcCCCC
Q psy4398 264 PKTILYAHCKYKRFEV 279 (306)
Q Consensus 264 ~~~~l~~~~~~~g~~~ 279 (306)
.-+.+.++.+++|++.
T Consensus 284 ~~~~ia~~A~~~gi~~ 299 (374)
T 3sjn_A 284 EMKKIYDIAQMNGTQL 299 (374)
T ss_dssp HHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHcCCEE
Confidence 1126677788888873
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.4e-06 Score=80.68 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCcccc-ccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAA-LLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~-l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
.+++++++.++.+. +||..+-++.++|.. ...|.. ...+++...++++++|+++ ++++.+....+|+.+++.
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~----~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~ 225 (404)
T 4e5t_A 150 NDADMAAEAAAKAVDQGFTAVKFDPAGAYT----IYDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAK 225 (404)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCSCCCB----TTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeCCCCCCc----ccccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHH
Confidence 47888888777654 599999999998742 111111 1123566788999999988 478888888889999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-Cc--
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-KL-- 263 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~~-- 263 (306)
++++.+++.|+++|. ++ ..+.+++..+++++.+++||++.+.+.+.++++++++.+. ...+.-++ .+
T Consensus 226 ~~~~~l~~~~i~~iE-------eP-~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a--~d~v~~d~~~~GG 295 (404)
T 4e5t_A 226 RLARRLEAYDPLWFE-------EP-IPPEKPEDMAEVARYTSIPVATGERLCTKYEFSRVLETGA--ASILQMNLGRVGG 295 (404)
T ss_dssp HHHHHHGGGCCSEEE-------CC-SCTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTC--CSEECCCTTTSSC
T ss_pred HHHHHHhhcCCcEEE-------CC-CCcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCC--CCEEecCccccCC
Confidence 999999999999985 22 2345889999999999999999999999999999988532 00111122 11
Q ss_pred --hHHHHHHHHHhcCCCCC
Q psy4398 264 --PKTILYAHCKYKRFEVP 280 (306)
Q Consensus 264 --~~~~l~~~~~~~g~~~~ 280 (306)
.-+.+.+..+++|++..
T Consensus 296 it~~~~ia~~A~~~gi~~~ 314 (404)
T 4e5t_A 296 LLEAKKIAAMAECHSAQIA 314 (404)
T ss_dssp HHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHcCCEEe
Confidence 12366777888888743
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=98.49 E-value=4.5e-06 Score=77.05 Aligned_cols=148 Identities=12% Similarity=0.143 Sum_probs=109.2
Q ss_pred CceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~ 178 (306)
.|+-..++..+++++.+.++++. +||+.|.+++++ +++.-.++++++|+. + +++.+....
T Consensus 129 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~avr~~-g~~~~l~vDan~ 191 (345)
T 2zad_A 129 IETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGE----------------NLKEDIEAVEEIAKV-TRGAKYIVDANM 191 (345)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHH-STTCEEEEECTT
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCcCEEEEeecC----------------CHHHHHHHHHHHHhh-CCCCeEEEECCC
Confidence 34445566678999988888765 599999998764 355567788999887 4 456665555
Q ss_pred CCChHHHHHHHHHHHHcCCc--EEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----h
Q psy4398 179 FHNEADTIALCKRLEACGII--AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----A 252 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d--~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~ 252 (306)
+|+.+++.++++.+++.|++ .|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. +
T Consensus 192 ~~~~~~a~~~~~~l~~~~i~~~~iE-------~P~-~~~~~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~ 263 (345)
T 2zad_A 192 GYTQKEAVEFARAVYQKGIDIAVYE-------QPV-RREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVN 263 (345)
T ss_dssp CSCHHHHHHHHHHHHHTTCCCSEEE-------CCS-CTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHHTCCSEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCeeeee-------CCC-CcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHhCCCCEEE
Confidence 78999999999999999999 764 222 346899999999999999999999999999999987532 1
Q ss_pred h--ccccCCCCCchHHHHHHHHHhcCCC
Q psy4398 253 F--LRNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 253 v--Grall~~p~~~~~~l~~~~~~~g~~ 278 (306)
+ +++-+ ..-+.+.++.+++|++
T Consensus 264 ik~~~GGi----t~~~~i~~~A~~~g~~ 287 (345)
T 2zad_A 264 IKLMKSGI----SDALAIVEIAESSGLK 287 (345)
T ss_dssp ECHHHHHH----HHHHHHHHHHHTTTCE
T ss_pred EecccccH----HHHHHHHHHHHHcCCe
Confidence 1 11101 1112556667777776
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.5e-06 Score=76.12 Aligned_cols=130 Identities=22% Similarity=0.218 Sum_probs=85.1
Q ss_pred HHHHHHhc-CCCEEEE--ccCCCccccccCCccc-cccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHH
Q psy4398 118 EAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGA-ALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLE 193 (306)
Q Consensus 118 ~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~-~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~ 193 (306)
+.|+..++ |++.|.+ |.+|+.. .+|+ ....+++ .++++++.+.+||.+|.+.+. .+.++.++
T Consensus 32 e~A~~ye~~GA~~lsvLe~~~~Di~-----~~~g~~R~~~~~----~i~~i~~~v~iPvl~k~~i~~-----ide~qil~ 97 (297)
T 4adt_A 32 EQAKIAEKAGAIGVMILENIPSELR-----NTDGVARSVDPL----KIEEIRKCISINVLAKVRIGH-----FVEAQILE 97 (297)
T ss_dssp HHHHHHHHHTCSEEEECCCCC----------CCCCCCCCCHH----HHHHHHTTCCSEEEEEEETTC-----HHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEecCCCCcch-----hcCCcccCCCHH----HHHHHHHhcCCCEEEeccCCc-----HHHHHHHH
Confidence 44555554 9998765 4556542 2333 3444555 466678888999999987432 55666667
Q ss_pred HcCCcEEEEccc-CC---------------------------------------CCC-CCC-------------------
Q psy4398 194 ACGIIAIGVHGR-TK---------------------------------------AER-PRH------------------- 213 (306)
Q Consensus 194 ~~G~d~i~v~~~-~~---------------------------------------~~~-~~~------------------- 213 (306)
++|+|.|..+.. +. .+. +.+
T Consensus 98 aaGAD~Id~s~~~~~~~li~~i~~~~~g~~vvv~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l 177 (297)
T 4adt_A 98 ELKVDMLDESEVLTMADEYNHINKHKFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYL 177 (297)
T ss_dssp HTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEcCCCCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhh
Confidence 788888743211 00 000 011
Q ss_pred ---------------CCcHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 214 ---------------RNRIEMIRTLTQHLKIPVI--ANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 214 ---------------p~~~~~v~~i~~~~~ipvi--a~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
..++++++++++.+++||+ +.|||.+++++..+++.| +.+|++++..+
T Consensus 178 ~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~ 245 (297)
T 4adt_A 178 CSLDESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESE 245 (297)
T ss_dssp HHSCTTTHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSS
T ss_pred ccccccccccccccCCCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCC
Confidence 2457888999999889987 999999999999999875 49999999743
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-06 Score=77.10 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=102.1
Q ss_pred ceEEEecCCCH--HHHHHHHHHHhc-CCCEEEEccCCCccccccCCcccccc----------CChHHHHHHHHHHHhc-c
Q psy4398 103 KIILQIGTADP--ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALL----------STPDIACNILTTLISN-L 168 (306)
Q Consensus 103 p~ivql~g~~~--~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~----------~~~~~~~eiv~~v~~~-~ 168 (306)
.++..|...+| +.+.+.++.+++ |+|.||+++....+ ..| |.... -+.....++++++|+. +
T Consensus 18 ~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp--~~D--G~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~ 93 (268)
T 1qop_A 18 AFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDP--LAD--GPTIQNANLRAFAAGVTPAQCFEMLAIIREKHP 93 (268)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCC--TTC--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred eEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCc--cCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 46667766655 888888887765 99999997532111 111 11111 1456677899999988 7
Q ss_pred cccEEEEeccCCCh---HHHHHHHHHHHHcCCcEEEEcccCC-------------------------------------C
Q psy4398 169 SIPVSCKIRVFHNE---ADTIALCKRLEACGIIAIGVHGRTK-------------------------------------A 208 (306)
Q Consensus 169 ~~pv~vKir~g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~-------------------------------------~ 208 (306)
+.|+.+=.. +++ ....++++.+.++|+|++++++-.. .
T Consensus 94 ~~Pv~lm~y--~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~ 171 (268)
T 1qop_A 94 TIPIGLLMY--ANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGR 171 (268)
T ss_dssp SSCEEEEEC--HHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCC
T ss_pred CCCEEEEEc--ccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCC
Confidence 899766221 121 1136788888888999888754220 0
Q ss_pred C--------CCCC------CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCC
Q psy4398 209 E--------RPRH------RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYP 259 (306)
Q Consensus 209 ~--------~~~~------p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~ 259 (306)
+ .+.+ +...++++++++.+++||+..|||++++++.+++.. ++.+|++++.
T Consensus 172 g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~ 239 (268)
T 1qop_A 172 GYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVK 239 (268)
T ss_dssp SCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred CcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 0 0111 223689999999999999999999999999997765 5599999864
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.6e-07 Score=79.03 Aligned_cols=150 Identities=12% Similarity=0.145 Sum_probs=104.3
Q ss_pred CceEEEecCCCH--HHHHHHHHHHhc-CCCEEEEccC--CCccccccCCcccccc----------CChHHHHHHHHHHHh
Q psy4398 102 NKIILQIGTADP--ERALEAAKKVEH-DVAAIDINMG--CPKQFSLTGGMGAALL----------STPDIACNILTTLIS 166 (306)
Q Consensus 102 ~p~ivql~g~~~--~~~~~aa~~~~~-g~d~veln~g--cP~~~~~~~~~G~~l~----------~~~~~~~eiv~~v~~ 166 (306)
..++.-|...+| +.+.+.++.+++ |+|.|||.+. -|. .| |-.+. -+.+.+.++++++|+
T Consensus 18 ~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~----aD--Gp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~ 91 (267)
T 3vnd_A 18 GAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPL----AD--GPVIQGANLRSLAAGTTSSDCFDIITKVRA 91 (267)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCT----TC--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCC----CC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 356777766655 889999988765 9999999743 343 11 11111 245677899999998
Q ss_pred c-ccccEEEEeccCCChH---HHHHHHHHHHHcCCcEEEEcccCC-----------------------------------
Q psy4398 167 N-LSIPVSCKIRVFHNEA---DTIALCKRLEACGIIAIGVHGRTK----------------------------------- 207 (306)
Q Consensus 167 ~-~~~pv~vKir~g~~~~---~~~~~a~~l~~~G~d~i~v~~~~~----------------------------------- 207 (306)
. .++|+.+-.- +++- ...++++.+.++|+|++++++-..
T Consensus 92 ~~~~~Pivlm~Y--~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~ 169 (267)
T 3vnd_A 92 QHPDMPIGLLLY--ANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSE 169 (267)
T ss_dssp HCTTCCEEEEEC--HHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHH
T ss_pred cCCCCCEEEEec--CcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH
Confidence 7 7889877544 2321 247788899999999988754210
Q ss_pred --CC--------CCC------CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCC
Q psy4398 208 --AE--------RPR------HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYP 259 (306)
Q Consensus 208 --~~--------~~~------~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~ 259 (306)
.+ ... .+...+.++++++.+++||+..|||++++++++.++. ++.+|+++++
T Consensus 170 ~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~ 240 (267)
T 3vnd_A 170 QGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVK 240 (267)
T ss_dssp HCCSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred hCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 00 000 1123578899999999999999999999999966664 5699998864
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=82.65 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=119.5
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccc--------------------cccCChHHHHH
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGA--------------------ALLSTPDIACN 159 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~--------------------~l~~~~~~~~e 159 (306)
..|+...+.+.+++++++.++.+. +||..+-+++|+|.... .||. ...++++...+
T Consensus 132 ~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~---~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~ 208 (418)
T 3r4e_A 132 GIMVYGHANGSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKD---AYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPK 208 (418)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTC---------------------CCCCEEEECHHHHHHHHHH
T ss_pred eeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccccc---cccccccccccccccccccccccccchhHHHHHHH
Confidence 356666677889999988887664 69999999999875211 1111 01112566788
Q ss_pred HHHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCC
Q psy4398 160 ILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237 (306)
Q Consensus 160 iv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI 237 (306)
+++++|+++ ++++.+....+|+.+++.++++.|++.|+++|. ++. .+.+++..+++++.+++||++.+.+
T Consensus 209 ~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~ 280 (418)
T 3r4e_A 209 LFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLE-------DCT-PAENQEAFRLVRQHTVTPLAVGEIF 280 (418)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------SCS-CCSSGGGGHHHHHHCCSCEEECTTC
T ss_pred HHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEE-------CCC-CccCHHHHHHHHhcCCCCEEEcCCc
Confidence 999999988 578888888899999999999999999999985 222 2457888899999999999999999
Q ss_pred CCHHHHHHHHHhhhhhccccCCCC-Cc----hHHHHHHHHHhcCCC
Q psy4398 238 KEIVDYGGVFSLNCAFLRNHYPVE-KL----PKTILYAHCKYKRFE 278 (306)
Q Consensus 238 ~s~~~~~~~l~~~v~vGrall~~p-~~----~~~~l~~~~~~~g~~ 278 (306)
.+.++++++++.+. ...+.-++ .+ .-+.+.+..+++|++
T Consensus 281 ~~~~~~~~~l~~~a--~d~v~~k~~~~GGit~~~~ia~~A~~~gi~ 324 (418)
T 3r4e_A 281 NTIWDAKDLIQNQL--IDYIRATVVGAGGLTHLRRIADLASLYQVR 324 (418)
T ss_dssp CSGGGTHHHHHTTC--CSEECCCTTTTTHHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHcCC--CCeEecCccccCCHHHHHHHHHHHHHcCCE
Confidence 99999999988532 00111122 12 112667778888887
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.3e-06 Score=78.56 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccc-cCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAAL-LSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l-~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
.+++++++.++.+. +||..+-++.++|... ..|... ..+++...+.++++|+++ ++++.+....+|+.+++.
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~----~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~ 218 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTA----YSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAI 218 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCBT----TCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCcc----ccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 57889888777654 5999999999886431 111111 113566788999999988 478888888889999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-Cc--
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-KL-- 263 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~~-- 263 (306)
++++.+++.|+++|. ++ ..+.+++..+++++.+++||++.+.+.+.++++++++.+. ...+.-++ .+
T Consensus 219 ~~~~~L~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a--~d~v~~d~~~~GG 288 (412)
T 4e4u_A 219 RLAKRLEKYDPLWFE-------EP-VPPGQEEAIAQVAKHTSIPIATGERLTTKYEFHKLLQAGG--ASILQLNVARVGG 288 (412)
T ss_dssp HHHHHHGGGCCSEEE-------CC-SCSSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTC--CSEECCCTTTTTS
T ss_pred HHHHHhhhcCCcEEE-------CC-CChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCC--CCEEEeCccccCC
Confidence 999999999999885 22 2345889999999999999999999999999999988532 00011122 11
Q ss_pred --hHHHHHHHHHhcCCCCCc
Q psy4398 264 --PKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 264 --~~~~l~~~~~~~g~~~~~ 281 (306)
.-+.+.+..+++|+++.+
T Consensus 289 it~~~kia~~A~~~gi~v~~ 308 (412)
T 4e4u_A 289 LLEAKKIATLAEVHYAQIAP 308 (412)
T ss_dssp HHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHHHcCCEEEe
Confidence 123667778888887433
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.43 E-value=9.5e-07 Score=75.90 Aligned_cols=156 Identities=16% Similarity=0.183 Sum_probs=100.8
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCcccc---------ccCCccccc---------------cCChHH
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFS---------LTGGMGAAL---------------LSTPDI 156 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~---------~~~~~G~~l---------------~~~~~~ 156 (306)
.|++..+.+.+++++.+.++.+.+ |++.||+.+.+|+... ...++|.-+ .--+..
T Consensus 13 ~~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~~~~~~gag~vl~~d~~~~A~~~GAd~v~~~~~ 92 (207)
T 2yw3_A 13 SRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGL 92 (207)
T ss_dssp HCEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTTSSCEEEEESCCSHHHHHHHHHHTCSEEEESSC
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhCCCCEEEeCeEeeHHHHHHHHHcCCCEEEcCCC
Confidence 478888888888888888887755 8999999988876421 112333311 111111
Q ss_pred HHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhC-CCcEEEe
Q psy4398 157 ACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHL-KIPVIAN 234 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~-~ipvia~ 234 (306)
-.++++..++ .+.|+...+. + .+-+..+.+.|+|+|.++.. .+. .+++++++++.+ ++|+++.
T Consensus 93 d~~v~~~~~~-~g~~~i~G~~---t----~~e~~~A~~~Gad~v~~fpa-------~~~gG~~~lk~l~~~~~~ipvvai 157 (207)
T 2yw3_A 93 LEEVAALAQA-RGVPYLPGVL---T----PTEVERALALGLSALKFFPA-------EPFQGVRVLRAYAEVFPEVRFLPT 157 (207)
T ss_dssp CHHHHHHHHH-HTCCEEEEEC---S----HHHHHHHHHTTCCEEEETTT-------TTTTHHHHHHHHHHHCTTCEEEEB
T ss_pred CHHHHHHHHH-hCCCEEecCC---C----HHHHHHHHHCCCCEEEEecC-------ccccCHHHHHHHHhhCCCCcEEEe
Confidence 1234444333 3555554433 2 22234456789999999641 122 468899999988 8999999
Q ss_pred cCCCCHHHHHHHHHhh---hhhccccCCCCCch--HHHHHHHHHh
Q psy4398 235 GGSKEIVDYGGVFSLN---CAFLRNHYPVEKLP--KTILYAHCKY 274 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~---v~vGrall~~p~~~--~~~l~~~~~~ 274 (306)
|||+ .+++.++++.+ +++|++++. +.+. ....+++++.
T Consensus 158 GGI~-~~n~~~~l~aGa~~vavgSai~~-~d~~~i~~~a~~~~~~ 200 (207)
T 2yw3_A 158 GGIK-EEHLPHYAALPNLLAVGGSWLLQ-GNLEAVRAKVRAAKAL 200 (207)
T ss_dssp SSCC-GGGHHHHHTCSSBSCEEESGGGS-SCHHHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHhCCCcEEEEehhhhC-CCHHHHHHHHHHHHHH
Confidence 9997 69999999874 489999987 4333 2344555544
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.6e-07 Score=103.81 Aligned_cols=198 Identities=11% Similarity=0.094 Sum_probs=122.8
Q ss_pred ccccccccCCceEEccCCC-CCCHHHHHHHHHcC-CCEEEe-cceechhhhhhhhhhhcccccccccCCCCCceeeecCC
Q psy4398 22 ANQANINYSNKIILAPMVR-MNTLPFRLLALDYG-ADLVYS-EELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCP 98 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~-~t~~~~r~~~~~~G-~g~~~t-e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (306)
++++.+.-+.||++|||.+ .++..+...+.++| .|.+-. .+.+++.+....+..... +
T Consensus 419 t~~~~~lg~~PIi~a~M~~~~s~~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~~~r~~------------------~- 479 (3089)
T 3zen_D 419 TKFTRLTGRSPILLAGMTPTTVDAKIVAAAANAGHWAELAGGGQVTEQIFNDRIAELETL------------------L- 479 (3089)
T ss_dssp CHHHHHHSSCSEEECCCHHHHTSHHHHHHHHHTTCEEEECSTTCCSHHHHHHHHHHHHHH------------------S-
T ss_pred chhhhhcCCCCEEeCCCcCCcCCHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHHh------------------c-
Confidence 3344433388999999995 45788887766665 466622 222333332221111110 1
Q ss_pred CCCCceEEEecCCCHHHH------HHHHHHH-hcC--CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc
Q psy4398 99 REKNKIILQIGTADPERA------LEAAKKV-EHD--VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS 169 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~------~~aa~~~-~~g--~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~ 169 (306)
..+.|+.+++.-.++..+ .+..+.+ ++| +|+|-+.+|.|. .+...++++.+++. +
T Consensus 480 ~~~~p~~vNl~~~~p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~---------------~ee~~~~i~~l~~~-G 543 (3089)
T 3zen_D 480 EPGRAIQFNTLFLDPYLWKLQVGGKRLVQRARQSGAPIDGLVVSAGIPD---------------LEEAVDIIDELNEV-G 543 (3089)
T ss_dssp CTTCCCEEEEECSCHHHHHHHHHHHHHHHHHHHTTCSCCEEEEESSCCC---------------HHHHHHHHTSTTHH-H
T ss_pred CCCCceeechhhcChhhhhhccCHHHHHHHHHHcCCCceEEEEeCCCCc---------------hhHhHHHHHHHHHc-C
Confidence 125688899887777442 2344444 458 899999888874 23445566666553 5
Q ss_pred ccEEE-EeccCCChHHHHHHHHHHHHcCCc------EEEEcccCCCCCCCCCCcHHHH----HHHHhhCCCcEEEecCCC
Q psy4398 170 IPVSC-KIRVFHNEADTIALCKRLEACGII------AIGVHGRTKAERPRHRNRIEMI----RTLTQHLKIPVIANGGSK 238 (306)
Q Consensus 170 ~pv~v-Kir~g~~~~~~~~~a~~l~~~G~d------~i~v~~~~~~~~~~~p~~~~~v----~~i~~~~~ipvia~GGI~ 238 (306)
+.++. +.. + .+.++.+++.|+| +|++.|.+..+.........++ .++++.+++|||+.|||.
T Consensus 544 i~~i~~~~~---t----~~~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g~~~~~~ll~~~~~~ir~~~~iPViaaGGI~ 616 (3089)
T 3zen_D 544 ISHVVFKPG---T----VEQIRSVIRIAAEVPTKPVIVHIEGGRAGGHHSWEDLDDLLLATYSELRSRSNITICVGGGIG 616 (3089)
T ss_dssp HCSEEECCC---S----HHHHHHHHHHHTTSTTSCEEEEECCSSSSEECCSCCHHHHHHHHHHHHTTCTTEEEEEESSCC
T ss_pred CEEEEEeCC---C----HHHHHHHHHhhhhcCCCcEEEEEeCCCcCCCCCcccHHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 54444 555 2 3444555566666 7888876543322111223455 788888899999999999
Q ss_pred CHHHHHHHH-----------H---hhhhhccccCCCC
Q psy4398 239 EIVDYGGVF-----------S---LNCAFLRNHYPVE 261 (306)
Q Consensus 239 s~~~~~~~l-----------~---~~v~vGrall~~p 261 (306)
|.+++..++ . .+++||++++.-+
T Consensus 617 d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~ 653 (3089)
T 3zen_D 617 TPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATL 653 (3089)
T ss_dssp CTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCT
T ss_pred CHHHHHHHhccccccccCccCCCCCEEEecHHHHhCc
Confidence 999999999 3 3679999998755
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.4e-06 Score=81.20 Aligned_cols=168 Identities=10% Similarity=0.021 Sum_probs=118.3
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCcccc------ccCCcccccc--CChHHHHHHHHHHHhcc--c
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFS------LTGGMGAALL--STPDIACNILTTLISNL--S 169 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~------~~~~~G~~l~--~~~~~~~eiv~~v~~~~--~ 169 (306)
..|+...+.+.+++++.+.++.+. +||..|-+.+|++.... ....-|..+. +..+...++++++|+++ +
T Consensus 143 ~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d 222 (422)
T 3tji_A 143 AIPAYSHASGETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWK 222 (422)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred eEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCC
Confidence 456666667788999988887664 69999999998642100 0001111111 12566788899999987 5
Q ss_pred ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 170 IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 170 ~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+++.+....+|+.+++.++++.|++.|+++|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.
T Consensus 223 ~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~ll~~ 294 (422)
T 3tji_A 223 LHILHDVHERLFPQQAVQLAKQLEPFQPYFIE-------DIL-PPQQSAWLEQVRQQSCVPLALGELFNNPAEWHDLIVN 294 (422)
T ss_dssp SEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------CCS-CGGGGGGHHHHHHHCCCCEEECTTCCSGGGTHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCeEE-------CCC-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhc
Confidence 78888888899999999999999999999885 222 2457888899999999999999999999999999875
Q ss_pred hhhhccccCCCC-C----chHHHHHHHHHhcCCC
Q psy4398 250 NCAFLRNHYPVE-K----LPKTILYAHCKYKRFE 278 (306)
Q Consensus 250 ~v~vGrall~~p-~----~~~~~l~~~~~~~g~~ 278 (306)
+. ...+.-++ . ..-+.+.+..+++|++
T Consensus 295 ga--~d~v~~k~~~~GGit~~~kia~lA~a~gv~ 326 (422)
T 3tji_A 295 RR--IDFIRCHVSQIGGITPALKLAHLCQAFGVR 326 (422)
T ss_dssp TC--CSEECCCGGGGTSHHHHHHHHHHHHHTTCE
T ss_pred CC--CCEEecCccccCCHHHHHHHHHHHHHcCCE
Confidence 32 00011111 1 1122566777888877
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.7e-06 Score=70.87 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=86.5
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF 179 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 179 (306)
+.|++.+|.+.+++++.+.++.+.+ |++.|++...+|.. .+.++.+++..+.++.+....-
T Consensus 6 ~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~------------------~~~i~~i~~~~~~~l~vg~g~~ 67 (212)
T 2v82_A 6 KLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQW------------------EQSIPAIVDAYGDKALIGAGTV 67 (212)
T ss_dssp SSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTSTTH------------------HHHHHHHHHHHTTTSEEEEECC
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhH------------------HHHHHHHHHhCCCCeEEEeccc
Confidence 4689999999999999999988765 99999998776542 0122222222233333321100
Q ss_pred CC--------------------------------------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHH
Q psy4398 180 HN--------------------------------------EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIR 221 (306)
Q Consensus 180 ~~--------------------------------------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~ 221 (306)
.+ ..+..+ +....+.|+|+|.+... .+..++.++
T Consensus 68 ~~~~~i~~a~~~Gad~V~~~~~~~~~~~~~~~~g~~~~~g~~t~~e-~~~a~~~G~d~v~v~~t-------~~~g~~~~~ 139 (212)
T 2v82_A 68 LKPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATE-AFTALEAGAQALKIFPS-------SAFGPQYIK 139 (212)
T ss_dssp CSHHHHHHHHHTTCCEEECSSCCHHHHHHHHHTTCEEECEECSHHH-HHHHHHTTCSEEEETTH-------HHHCHHHHH
T ss_pred cCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCCEEeecCCHHH-HHHHHHCCCCEEEEecC-------CCCCHHHHH
Confidence 00 001112 23334567777765321 123568889
Q ss_pred HHHhhCC--CcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 222 TLTQHLK--IPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 222 ~i~~~~~--ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
++++.++ +||++.|||+ .+++.++++.|+ .+|++++..
T Consensus 140 ~l~~~~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 140 ALKAVLPSDIAVFAVGGVT-PENLAQWIDAGCAGAGLGSDLYRA 182 (212)
T ss_dssp HHHTTSCTTCEEEEESSCC-TTTHHHHHHHTCSEEEECTTTCCT
T ss_pred HHHHhccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence 9998886 9999999997 899999988754 999999875
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=98.40 E-value=6.2e-06 Score=78.36 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=118.7
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCcccc------------------c--cCChHHHHH
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAA------------------L--LSTPDIACN 159 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~------------------l--~~~~~~~~e 159 (306)
..|+...+.+.+++++++.++.+. +||..+-+.+|.|.. ...||.. + .++.+...+
T Consensus 138 ~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvG~~~~---~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e 214 (424)
T 3v3w_A 138 RILSYTHANGKDLDSTLEAVRKAKDKGYKAIRVQCGIPGI---AKTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIPD 214 (424)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTC---SCCTTCC-----CCSCCBSSCCEEEECHHHHHHHHHH
T ss_pred ceeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCccc---cccccccccccccccccccccccccccchhHHHHHHH
Confidence 345655667788999988887664 699999999887531 0111110 0 012456788
Q ss_pred HHHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCC
Q psy4398 160 ILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237 (306)
Q Consensus 160 iv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI 237 (306)
+++++|+++ ++++.+....+|+.+++.++++.|++.|+++|. ++. .+.+++..+++++.+++||++.+.+
T Consensus 215 ~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~ 286 (424)
T 3v3w_A 215 VFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWME-------DAV-PAENQESFKLIRQHTTTPLAVGEVF 286 (424)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------CCS-CCSSTTHHHHHHHHCCSCEEECTTC
T ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE-------CCC-ChHhHHHHHHHHhhCCCCEEEccCc
Confidence 999999988 578888888899999999999999999999985 222 2457888999999999999999999
Q ss_pred CCHHHHHHHHHhhhhhccccCCCC-Cc----hHHHHHHHHHhcCCC
Q psy4398 238 KEIVDYGGVFSLNCAFLRNHYPVE-KL----PKTILYAHCKYKRFE 278 (306)
Q Consensus 238 ~s~~~~~~~l~~~v~vGrall~~p-~~----~~~~l~~~~~~~g~~ 278 (306)
.+.++++++++.+. ...+.-++ .+ .-+.+.+..+++|++
T Consensus 287 ~~~~~~~~~i~~ga--~d~v~~k~~~~GGit~~~~ia~~A~~~gi~ 330 (424)
T 3v3w_A 287 NSIHDCRELIQNQW--IDYIRTTIVHAGGISQMRRIADFASLFHVR 330 (424)
T ss_dssp CSGGGTHHHHHTTC--CSEECCCTTTTTHHHHHHHHHHHHHTTTCE
T ss_pred CCHHHHHHHHHcCC--CCeEeecchhcCCHHHHHHHHHHHHHcCCE
Confidence 99999999988532 00111122 22 112667778888887
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-07 Score=83.01 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=73.7
Q ss_pred EEEEeccCCCh------HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 172 VSCKIRVFHNE------ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 172 v~vKir~g~~~------~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
..||++.||.. .+..++++.++++|+|.|++++.+..+... +.+++.+++++ .+++||+++|||++.+++++
T Consensus 13 ~~vk~~~G~~~~~~~~~~~~~~~a~~~~~~Gad~i~v~d~~~~~~~~-~~~~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~ 90 (241)
T 1qo2_A 13 KVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIENS-GENLPVLEKLS-EFAEHIQIGGGIRSLDYAEK 90 (241)
T ss_dssp EEEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEEEHHHHHHCC-CTTHHHHHHGG-GGGGGEEEESSCCSHHHHHH
T ss_pred EEEEEeccccccceecCcCHHHHHHHHHHcCCCEEEEecccccccCC-chhHHHHHHHH-hcCCcEEEECCCCCHHHHHH
Confidence 46777777632 368999999999999999998765432222 35789999999 88999999999999999999
Q ss_pred HHHhh---hhhccccCCCCCch
Q psy4398 246 VFSLN---CAFLRNHYPVEKLP 264 (306)
Q Consensus 246 ~l~~~---v~vGrall~~p~~~ 264 (306)
+++.+ +.+|++++.+|.+.
T Consensus 91 ~~~~Gad~V~lg~~~l~~p~~~ 112 (241)
T 1qo2_A 91 LRKLGYRRQIVSSKVLEDPSFL 112 (241)
T ss_dssp HHHTTCCEEEECHHHHHCTTHH
T ss_pred HHHCCCCEEEECchHhhChHHH
Confidence 99875 49999999988543
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.38 E-value=9.6e-06 Score=75.99 Aligned_cols=153 Identities=12% Similarity=0.179 Sum_probs=114.8
Q ss_pred CceEEEecCCCHHHHHHHHHH-Hhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEec
Q psy4398 102 NKIILQIGTADPERALEAAKK-VEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~-~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir 177 (306)
.|+...+...++++..+.++. +++ ||..+-+++|++ +++.-.+.++++|+.+ ++++.+...
T Consensus 138 v~~~~t~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDan 202 (383)
T 3i4k_A 138 VDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAG---------------DPAEDTRRVAELAREVGDRVSLRIDIN 202 (383)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHHHCCSEEEEECCSS---------------CHHHHHHHHHHHHHTTTTTSEEEEECT
T ss_pred EEEeEEeeCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC---------------CHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 455566777788887766664 566 999999998762 3556678899999998 478999988
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----hh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----AF 253 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~v 253 (306)
.+|+.+++.++++.+++.|+++|. ++ ..+.+++..+++++.+++||++.+.+.+.++++++++.+. ++
T Consensus 203 ~~~~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~ 274 (383)
T 3i4k_A 203 ARWDRRTALHYLPILAEAGVELFE-------QP-TPADDLETLREITRRTNVSVMADESVWTPAEALAVVKAQAADVIAL 274 (383)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCEEE-------SC-SCTTCHHHHHHHHHHHCCEEEESTTCSSHHHHHHHHHHTCCSEEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEE-------CC-CChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEE
Confidence 899999999999999999999885 22 2345789999999999999999999999999999987532 11
Q ss_pred ccccCCCCCchHHHHHHHHHhcCCC
Q psy4398 254 LRNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 254 Grall~~p~~~~~~l~~~~~~~g~~ 278 (306)
--... +-...-+.+.++.+++|++
T Consensus 275 k~~~~-GGit~~~~ia~~A~~~gi~ 298 (383)
T 3i4k_A 275 KTTKH-GGLLESKKIAAIAEAGGLA 298 (383)
T ss_dssp CTTTT-TSHHHHHHHHHHHHHTTCE
T ss_pred ccccc-CCHHHHHHHHHHHHHcCCe
Confidence 11100 1011123666777888877
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=4.6e-07 Score=96.34 Aligned_cols=103 Identities=13% Similarity=0.037 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCC--------CCCCCcHHHHHHH
Q psy4398 153 TPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAER--------PRHRNRIEMIRTL 223 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~--------~~~p~~~~~v~~i 223 (306)
+++.+.++++.+++.. +.||.||+-.. ......|+.++++|+|+|++++...... ..+.+....+.++
T Consensus 1011 s~edl~~~I~~Lk~~~~~~PV~VKlv~~---~gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev 1087 (1520)
T 1ofd_A 1011 SIEDLAQLIYDLHQINPEAQVSVKLVAE---IGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEV 1087 (1520)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEEEEEECS---TTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEecCC---CChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHH
Confidence 4667789999999988 89999999843 2345578889999999999987642211 1122344566666
Q ss_pred HhhC-------CCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 224 TQHL-------KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 224 ~~~~-------~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
++.+ ++|||+.|||.+..|+.+++..|+ ++||+++
T Consensus 1088 ~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL 1132 (1520)
T 1ofd_A 1088 HRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAM 1132 (1520)
T ss_dssp HHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHH
T ss_pred HHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHH
Confidence 6654 699999999999999999998764 8888764
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.1e-06 Score=73.08 Aligned_cols=125 Identities=17% Similarity=0.195 Sum_probs=88.0
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C-CChHHHHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F-HNEADTIALCKRL 192 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g-~~~~~~~~~a~~l 192 (306)
..++...++.|+|.|++.+. +|.....+.+.+.+=++++++.++- ..+|+=+ + .+.++....++..
T Consensus 98 v~Ea~~Ai~~GAdEIDmViN----------ig~lk~g~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~ia 166 (239)
T 3ngj_A 98 AYETKVAVEQGAEEVDMVIN----------IGMVKAKKYDDVEKDVKAVVDASGK-ALTKVIIECCYLTNEEKVEVCKRC 166 (239)
T ss_dssp HHHHHHHHHTTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHHHTT-SEEEEECCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEee----------hHHhccccHHHHHHHHHHHHHHhcC-CceEEEEecCCCCHHHHHHHHHHH
Confidence 34444455679999998643 3444445777788878888887742 2344321 2 4667788999999
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
.++|+|+|-.+-. ...+.+.++.++.+++.+ +++|-++|||+|.+++.++++.|+ -+|+
T Consensus 167 ~~aGADfVKTSTG----f~~ggAt~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aGA~riGt 228 (239)
T 3ngj_A 167 VAAGAEYVKTSTG----FGTHGATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNGASRIGA 228 (239)
T ss_dssp HHHTCSEEECCCS----SSSCCCCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTTEEEEEE
T ss_pred HHHCcCEEECCCC----CCCCCCCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhcccceec
Confidence 9999999986522 112335677777777776 689999999999999999999876 3443
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.8e-06 Score=75.80 Aligned_cols=151 Identities=13% Similarity=0.190 Sum_probs=100.5
Q ss_pred ceEEEecCC--CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCcccccc----------CChHHHHHHHHHHHhc-c
Q psy4398 103 KIILQIGTA--DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALL----------STPDIACNILTTLISN-L 168 (306)
Q Consensus 103 p~ivql~g~--~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~----------~~~~~~~eiv~~v~~~-~ 168 (306)
.++.=|... +.+.+.+.++.+.+ |+|.|||.+.-..+ ..| |-.+. -+.+.+.++++++|+. .
T Consensus 21 ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP--~aD--GpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~ 96 (271)
T 3nav_A 21 AFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDP--LAD--GPTIQGANLRALAAKTTPDICFELIAQIRARNP 96 (271)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCG--GGC--CSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCC--CCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 344445433 56889999887765 99999997543211 112 11111 2456778899999987 7
Q ss_pred cccEEEEeccCCChH---HHHHHHHHHHHcCCcEEEEcccCC------------------------------------CC
Q psy4398 169 SIPVSCKIRVFHNEA---DTIALCKRLEACGIIAIGVHGRTK------------------------------------AE 209 (306)
Q Consensus 169 ~~pv~vKir~g~~~~---~~~~~a~~l~~~G~d~i~v~~~~~------------------------------------~~ 209 (306)
++|+.+-.- +++- ...++++.+.++|+|++++.+-.. ..
T Consensus 97 ~~Pivlm~Y--~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~ 174 (271)
T 3nav_A 97 ETPIGLLMY--ANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGK 174 (271)
T ss_dssp TSCEEEEEC--HHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCC
T ss_pred CCCEEEEec--CcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCC
Confidence 899887543 2221 246788888888888887643210 00
Q ss_pred C---------CCC-----CC-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCC
Q psy4398 210 R---------PRH-----RN-RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYP 259 (306)
Q Consensus 210 ~---------~~~-----p~-~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~ 259 (306)
. ..| +. ..++++++++.+++||+..+||.+++++++.++. ++.+|+++.+
T Consensus 175 gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv~ 242 (271)
T 3nav_A 175 GYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVK 242 (271)
T ss_dssp SCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred CeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0 011 11 2467899999999999999999999999966664 6699999863
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=98.34 E-value=6.1e-06 Score=74.49 Aligned_cols=126 Identities=12% Similarity=0.116 Sum_probs=90.7
Q ss_pred CCceEEEe---cCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCcc-ccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 101 KNKIILQI---GTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMG-AALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 101 ~~p~ivql---~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G-~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
+.|+++.+ +|.++++..+.++++.+ |+++|.|+-++..+ +.+..| ..+....+.+..|..++....+.++.+.
T Consensus 78 ~~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k--~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~ 155 (295)
T 1xg4_A 78 SLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAK--RSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIM 155 (295)
T ss_dssp CSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSC--CCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEE
T ss_pred CCCEEecCCcccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCc--ccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 46999999 56689898888887764 99999999887322 222233 3354444555555444444446677777
Q ss_pred eccCC----ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCC
Q psy4398 176 IRVFH----NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237 (306)
Q Consensus 176 ir~g~----~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI 237 (306)
-|..- ..+++++=+++++++|+|.|.+++. .+++.++++.+.+++|+++|.-.
T Consensus 156 aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~~---------~~~~~~~~i~~~~~iP~~~N~~~ 212 (295)
T 1xg4_A 156 ARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAI---------TELAMYRQFADAVQVPILANITE 212 (295)
T ss_dssp EEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTC---------CSHHHHHHHHHHHCSCBEEECCS
T ss_pred EecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeCC---------CCHHHHHHHHHHcCCCEEEEecc
Confidence 77422 2367899999999999999999874 26789999999999999987643
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=98.34 E-value=7.2e-06 Score=77.95 Aligned_cols=165 Identities=12% Similarity=0.086 Sum_probs=116.6
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCcccc------------------c--cCChHHHHH
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAA------------------L--LSTPDIACN 159 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~------------------l--~~~~~~~~e 159 (306)
..|+-..+.+.+++++++.++.+. +||..+-+.+|.|.. ...||.. + .+..+...+
T Consensus 139 ~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~---~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e 215 (425)
T 3vcn_A 139 GVTVYGHANGETIEDTIAEAVKYKAMGYKAIRLQTGVPGL---ASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPK 215 (425)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTC---SCCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHH
T ss_pred eeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeecCccc---cccccccccccccCcccccccccccccchhHHHHHHH
Confidence 345655667788999988887664 699999999886431 0111100 0 001334577
Q ss_pred HHHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCC
Q psy4398 160 ILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237 (306)
Q Consensus 160 iv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI 237 (306)
+++++|+++ ++++.+....+|+.+++.++++.|++.|+++|. ++. .+.+++..+++++.+++||++.+.+
T Consensus 216 ~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~ 287 (425)
T 3vcn_A 216 LFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLE-------DSV-PAENQAGFRLIRQHTTTPLAVGEIF 287 (425)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------CCS-CCSSTTHHHHHHHHCCSCEEECTTC
T ss_pred HHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CCC-ChhhHHHHHHHHhcCCCCEEeCCCc
Confidence 889999887 578888888889999999999999999999985 222 2457788999999999999999999
Q ss_pred CCHHHHHHHHHhhhhhccccCCCC-Cch----HHHHHHHHHhcCCC
Q psy4398 238 KEIVDYGGVFSLNCAFLRNHYPVE-KLP----KTILYAHCKYKRFE 278 (306)
Q Consensus 238 ~s~~~~~~~l~~~v~vGrall~~p-~~~----~~~l~~~~~~~g~~ 278 (306)
.+.++++++++.+. ...+.-++ .+. -+.+.+..+++|++
T Consensus 288 ~~~~~~~~~i~~~a--~d~v~~k~~~~GGit~~~~ia~~A~~~gi~ 331 (425)
T 3vcn_A 288 AHVWDAKQLIEEQL--IDYLRATVLHAGGITNLKKIAAFADLHHVK 331 (425)
T ss_dssp CSGGGTHHHHHTTC--CSEECCCTTTTTHHHHHHHHHHHHGGGTCE
T ss_pred CCHHHHHHHHHcCC--CCeEecChhhcCCHHHHHHHHHHHHHcCCE
Confidence 99999999988532 00111122 121 12566777888877
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.4e-06 Score=73.63 Aligned_cols=124 Identities=12% Similarity=0.085 Sum_probs=85.0
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C-CChHHHHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F-HNEADTIALCKRL 192 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g-~~~~~~~~~a~~l 192 (306)
..++...++.|+|.|++.+. +|.....+.+.+.+-++++++.++.+ .+|+=+ + .+.++....++..
T Consensus 129 v~Ea~~Ai~~GAdEIDmVIN----------ig~lk~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~ia 197 (288)
T 3oa3_A 129 VSEAKRAMQNGASELDMVMN----------YPWLSEKRYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEIIAGCVLS 197 (288)
T ss_dssp HHHHHHHHHTTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEee----------hhhhcCCcHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHHHHHHHH
Confidence 44444555679999996432 34444457788888889998888656 355443 2 4566788889999
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH--LKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~--~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.++|+|+|--+-....+.. .+.+.++++++.+. .+++|.++|||++.+++.+++++|+
T Consensus 198 ~eaGADfVKTSTGf~~~GA-T~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA 257 (288)
T 3oa3_A 198 SLAGADYVKTSTGFNGPGA-SIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGA 257 (288)
T ss_dssp HHTTCSEEECCCSSSSCCC-CHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTC
T ss_pred HHcCCCEEEcCCCCCCCCC-CHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCC
Confidence 9999999975422111111 11245556666543 3699999999999999999999876
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=98.32 E-value=5.7e-06 Score=78.96 Aligned_cols=143 Identities=11% Similarity=0.104 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
.+++++.+.|+++. +||+.|.|++++ +++...++++++|+++ ++++.+....+|+.+++.+
T Consensus 197 ~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~ 260 (441)
T 2hxt_A 197 YSDEKLVRLAKEAVADGFRTIKLKVGA----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAID 260 (441)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccCC----------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 47899988888775 599999998763 3677788999999987 4778888777899999999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-Cc--
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-KL-- 263 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~~-- 263 (306)
+++.+++.|++.|- ++. .+.+++..+++++.+ ++||++.+.+.+.++++++++.+. ...+.-++ .+
T Consensus 261 ~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~--~d~v~ik~~~~GG 330 (441)
T 2hxt_A 261 WMRQLAEFDIAWIE-------EPT-SPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGA--VDLIQIDAARVGG 330 (441)
T ss_dssp HHHTTGGGCCSCEE-------CCS-CTTCHHHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTC--CSEECCCTTTSSH
T ss_pred HHHHHHhcCCCeee-------CCC-CHHHHHHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCC--CCEEEeCcceeCC
Confidence 99999999999874 222 245889999999998 699999999999999999987632 00111122 11
Q ss_pred --hHHHHHHHHHhcCCCC
Q psy4398 264 --PKTILYAHCKYKRFEV 279 (306)
Q Consensus 264 --~~~~l~~~~~~~g~~~ 279 (306)
.-+.+.+..+++|++.
T Consensus 331 ite~~~ia~~A~~~g~~~ 348 (441)
T 2hxt_A 331 VNENLAILLLAAKFGVRV 348 (441)
T ss_dssp HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHcCCeE
Confidence 1125666677777774
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=9.4e-06 Score=75.25 Aligned_cols=150 Identities=11% Similarity=0.121 Sum_probs=110.8
Q ss_pred ceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccC
Q psy4398 103 KIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVF 179 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g 179 (306)
|+...+...+++++.+.++.+ ++||..+-+++|++ ++.-.+.++++|+.+ ++++.+....+
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~g~~----------------~~~d~~~v~avR~a~g~~~~l~vDan~~ 193 (354)
T 3jva_A 130 ITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTG----------------IEADIARVKAIREAVGFDIKLRLDANQA 193 (354)
T ss_dssp ECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSC----------------HHHHHHHHHHHHHHHCTTSEEEEECTTC
T ss_pred eeeEEeCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC----------------HHHHHHHHHHHHHHcCCCCeEEEECCCC
Confidence 334556667898888777755 46999999998752 244467888898887 57788888888
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCC
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYP 259 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~ 259 (306)
|+.+++.++++.+++.|+++|. ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. ...+.-
T Consensus 194 ~~~~~a~~~~~~L~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~--~d~v~~ 263 (354)
T 3jva_A 194 WTPKDAVKAIQALADYQIELVE-------QPV-KRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGT--VDVINI 263 (354)
T ss_dssp SCHHHHHHHHHHTTTSCEEEEE-------CCS-CTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHHTC--CSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEE-------CCC-ChhhHHHHHHHHHhCCCCEEEcCCcCCHHHHHHHHHcCC--CCEEEE
Confidence 9999999999999999988885 222 345889999999999999999999999999999987531 000001
Q ss_pred CC-----CchHHHHHHHHHhcCCC
Q psy4398 260 VE-----KLPKTILYAHCKYKRFE 278 (306)
Q Consensus 260 ~p-----~~~~~~l~~~~~~~g~~ 278 (306)
++ ...-..+.++.+++|++
T Consensus 264 k~~~~GGit~~~~i~~~A~~~gi~ 287 (354)
T 3jva_A 264 KLMKCGGIHEALKINQICETAGIE 287 (354)
T ss_dssp CHHHHTSHHHHHHHHHHHHHTTCE
T ss_pred CchhcCCHHHHHHHHHHHHHcCCe
Confidence 11 01112666777788877
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.31 E-value=8.1e-06 Score=76.78 Aligned_cols=144 Identities=12% Similarity=0.105 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
|.+++++++.++.+. +||..+.+++|+ +++.-.+.++++|+.+ +.++.+....+|+.+++.
T Consensus 153 g~~~e~~~~~a~~~~~~G~~~iKlK~g~----------------~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~ 216 (392)
T 3ddm_A 153 GINPENPEDVVARKAAEGYRAFKLKVGF----------------DDARDVRNALHVRELLGAATPLMADANQGWDLPRAR 216 (392)
T ss_dssp EECSSSHHHHHHHHHHHTCCCEEEECSS----------------CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCC----------------CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHH
Confidence 444778888877665 599999998764 3455678889999987 578999988899999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-Cc-
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNR-IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-KL- 263 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~-~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~~- 263 (306)
++++.+++.|+++|- ++. .+.+ ++..+++++.+++||++.+.+.+.++++++++.+. ...+.-++ .+
T Consensus 217 ~~~~~L~~~~i~~iE-------eP~-~~~d~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a--~d~v~~k~~~~G 286 (392)
T 3ddm_A 217 QMAQRLGPAQLDWLE-------EPL-RADRPAAEWAELAQAAPMPLAGGENIAGVAAFETALAARS--LRVMQPDLAKWG 286 (392)
T ss_dssp HHHHHHGGGCCSEEE-------CCS-CTTSCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTC--EEEECCCTTTTT
T ss_pred HHHHHHHHhCCCEEE-------CCC-CccchHHHHHHHHHhcCCCEEeCCCCCCHHHHHHHHHcCC--CCEEEeCcchhC
Confidence 999999999999985 222 3457 89999999999999999999999999999987542 00111122 22
Q ss_pred ---hHHHHHHHHHhcCCCC
Q psy4398 264 ---PKTILYAHCKYKRFEV 279 (306)
Q Consensus 264 ---~~~~l~~~~~~~g~~~ 279 (306)
.-+.+.++.+++|++.
T Consensus 287 Git~~~~ia~~A~~~gi~~ 305 (392)
T 3ddm_A 287 GFSGCLPVARAVVAAGLRY 305 (392)
T ss_dssp HHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHcCCEE
Confidence 1236778888889885
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-05 Score=75.13 Aligned_cols=147 Identities=10% Similarity=0.130 Sum_probs=105.4
Q ss_pred ceEEEecC-CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc
Q psy4398 103 KIILQIGT-ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV 178 (306)
Q Consensus 103 p~ivql~g-~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~ 178 (306)
|+..+++. .+++++.+.++++. +||+.|.++++ | +...++++++|+.+ ++++.+....
T Consensus 131 ~~~~~~g~~~~~~~~~~~a~~~~~~Gf~~vKik~~-~-----------------~~~~e~v~avr~~~g~~~~l~vDan~ 192 (368)
T 1sjd_A 131 PCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE-P-----------------GWDVEPVRAVRERFGDDVLLQVDANT 192 (368)
T ss_dssp EBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB-T-----------------TBSHHHHHHHHHHHCTTSEEEEECTT
T ss_pred cceEEeeCCCCHHHHHHHHHHHHHhCccEEEEecC-c-----------------hhHHHHHHHHHHhcCCCceEEEeccC
Confidence 34444443 48899988888765 59999999863 1 23356778888877 4667777666
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHY 258 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall 258 (306)
+|+.++ .++++.+++.|++.|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. ...+.
T Consensus 193 ~~~~~~-~~~~~~l~~~~i~~iE-------~P~-~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~--~d~v~ 261 (368)
T 1sjd_A 193 AYTLGD-APQLARLDPFGLLLIE-------QPL-EEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGA--VQIVN 261 (368)
T ss_dssp CCCGGG-HHHHHTTGGGCCSEEE-------CCS-CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTC--CSEEE
T ss_pred CCCHHH-HHHHHHHHhcCCCeEe-------CCC-ChhhHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCC--CCEEE
Confidence 899999 9999999999999874 222 346899999999999999999999999999999987532 00011
Q ss_pred CCC-C----chHHHHHHHHHhcCCC
Q psy4398 259 PVE-K----LPKTILYAHCKYKRFE 278 (306)
Q Consensus 259 ~~p-~----~~~~~l~~~~~~~g~~ 278 (306)
-++ . ..-+.+.++.+++|++
T Consensus 262 ik~~~~GGit~~~~i~~~A~~~g~~ 286 (368)
T 1sjd_A 262 IKPGRVGGYLEARRVHDVCAAHGIP 286 (368)
T ss_dssp ECTTTTTSHHHHHHHHHHHHHTTCC
T ss_pred ecccccCCHHHHHHHHHHHHHcCCc
Confidence 122 1 1123566667777776
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.5e-06 Score=71.40 Aligned_cols=137 Identities=12% Similarity=0.056 Sum_probs=91.5
Q ss_pred CCceEEEecCCC-HHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 101 KNKIILQIGTAD-PERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~-~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
+.|+.+.+.-.+ ++.+ ++.+ +.|+|+|-++...+ .+.+.++++.+++. +.++.+-+.
T Consensus 53 ~~~i~~~~~~~~~~~~~---~~~~~~~Gad~v~v~~~~~----------------~~~~~~~~~~~~~~-g~~~~v~~~- 111 (211)
T 3f4w_A 53 HKEVLADAKIMDGGHFE---SQLLFDAGADYVTVLGVTD----------------VLTIQSCIRAAKEA-GKQVVVDMI- 111 (211)
T ss_dssp TSEEEEEEEECSCHHHH---HHHHHHTTCSEEEEETTSC----------------HHHHHHHHHHHHHH-TCEEEEECT-
T ss_pred CCEEEEEEEeccchHHH---HHHHHhcCCCEEEEeCCCC----------------hhHHHHHHHHHHHc-CCeEEEEec-
Confidence 457777765433 4433 3333 45999999974321 23445666666653 555555432
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhc
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFL 254 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vG 254 (306)
+..+..+.++.+.+.|+|+|.++........ ++..++.++++++.+ ++||++.|||+ .+++.++++.| +.+|
T Consensus 112 --~~~t~~~~~~~~~~~g~d~i~v~~g~~g~~~-~~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 112 --CVDDLPARVRLLEEAGADMLAVHTGTDQQAA-GRKPIDDLITMLKVRRKARIAVAGGIS-SQTVKDYALLGPDVVIVG 187 (211)
T ss_dssp --TCSSHHHHHHHHHHHTCCEEEEECCHHHHHT-TCCSHHHHHHHHHHCSSCEEEEESSCC-TTTHHHHHTTCCSEEEEC
T ss_pred --CCCCHHHHHHHHHHcCCCEEEEcCCCccccc-CCCCHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 1234567788889999999987632111111 233678999999997 89999999996 99999999875 4999
Q ss_pred cccCCCCC
Q psy4398 255 RNHYPVEK 262 (306)
Q Consensus 255 rall~~p~ 262 (306)
|+++..+.
T Consensus 188 sai~~~~d 195 (211)
T 3f4w_A 188 SAITHAAD 195 (211)
T ss_dssp HHHHTCSS
T ss_pred HHHcCCCC
Confidence 99997654
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=98.29 E-value=4.5e-06 Score=77.46 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=102.4
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~ 178 (306)
.|+..+++..+++++.+.++.+ ++||..+-+++|+ +++.-.+.++++|+.+ +.++.+....
T Consensus 130 v~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~G~----------------~~~~d~~~v~avR~~~g~~~~l~vDan~ 193 (356)
T 3ro6_B 130 LPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCG----------------DEEQDFERLRRLHETLAGRAVVRVDPNQ 193 (356)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHHTTSSEEEEECTT
T ss_pred eeeeEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------CHHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4566677778899988877765 4699999999875 3455677888998887 5788888888
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+|+.+++.++++.+++.|+++|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.
T Consensus 194 ~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~ 256 (356)
T 3ro6_B 194 SYDRDGLLRLDRLVQELGIEFIE-------QPF-PAGRTDWLRALPKAIRRRIAADESLLGPADAFALAAP 256 (356)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCEE-------CCS-CTTCHHHHHTSCHHHHHTEEESTTCCSHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHhcCCCEEE-------CCC-CCCcHHHHHHHHhcCCCCEEeCCcCCCHHHHHHHHhc
Confidence 99999999999999999999884 222 2458899999999999999999999999999998874
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=5.6e-07 Score=79.19 Aligned_cols=82 Identities=10% Similarity=0.195 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
.+..++++.++++|+|.|++++....+.. .+.+++.++++++.+++||+++|||++.++++++++.+ +.+|++++.
T Consensus 31 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~~-~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 109 (252)
T 1ka9_F 31 GDPVEAARAYDEAGADELVFLDISATHEE-RAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 109 (252)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSSTTC-HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCccccC-ccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 46889999999999999999876543222 23467889999999999999999999999999999875 499999999
Q ss_pred CCCchH
Q psy4398 260 VEKLPK 265 (306)
Q Consensus 260 ~p~~~~ 265 (306)
+|.+.+
T Consensus 110 ~p~~~~ 115 (252)
T 1ka9_F 110 RPELIR 115 (252)
T ss_dssp CTHHHH
T ss_pred CcHHHH
Confidence 885443
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.7e-05 Score=75.73 Aligned_cols=168 Identities=12% Similarity=0.098 Sum_probs=116.4
Q ss_pred CCceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccc-----------cccCC------------ccccc--cCCh
Q psy4398 101 KNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQF-----------SLTGG------------MGAAL--LSTP 154 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~-----------~~~~~------------~G~~l--~~~~ 154 (306)
..|+...+.+.+++++++.++.+ ++||..+-+.+|..... ...+. -|..+ ....
T Consensus 144 ~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (440)
T 3t6c_A 144 GIALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYA 223 (440)
T ss_dssp SEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHHH
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhhH
Confidence 34566567778899998887765 46999999998743210 00000 00000 0114
Q ss_pred HHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE
Q psy4398 155 DIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI 232 (306)
Q Consensus 155 ~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi 232 (306)
+...+.++++|+++ ++++.+....+|+.+++.++++.|++.|+++|- ++. .+.+++..+++++.+++||+
T Consensus 224 ~~d~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~iPIa 295 (440)
T 3t6c_A 224 KSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLE-------DPV-APENTEWLKMLRQQSSTPIA 295 (440)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEE-------CSS-CGGGGGGHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEE-------CCC-ChhhHHHHHHHHhhcCCCEE
Confidence 56678899999988 578999988899999999999999999999885 222 24578888999999999999
Q ss_pred EecCCCCHHHHHHHHHhhhhhccccCCCC-C----chHHHHHHHHHhcCCC
Q psy4398 233 ANGGSKEIVDYGGVFSLNCAFLRNHYPVE-K----LPKTILYAHCKYKRFE 278 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v~vGrall~~p-~----~~~~~l~~~~~~~g~~ 278 (306)
+...+.+.++++++++.+. ...+.-++ . ..-+.+.+..+++|++
T Consensus 296 ~dE~~~~~~~~~~~i~~~a--~d~v~~k~~~~GGit~~~~ia~~A~~~gi~ 344 (440)
T 3t6c_A 296 MGELFVNVNEWKPLIDNKL--IDYIRCHISSIGGITPAKKIAIYSELNGVR 344 (440)
T ss_dssp ECTTCCSHHHHHHHHHTTC--CSEECCCGGGGTSHHHHHHHHHHHHHTTCE
T ss_pred eCcccCCHHHHHHHHHcCC--ccceeechhhhCCHHHHHHHHHHHHHcCCE
Confidence 9999999999999987532 00011111 1 1112566777788877
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.24 E-value=8.2e-07 Score=78.19 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
.+..++++.++++|+|.|+++..+.... ..+.+++.++++++.+++||+++|||+++++++++++.+ +.+|++++.
T Consensus 30 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~-~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~ 108 (253)
T 1thf_D 30 GDPVELGKFYSEIGIDELVFLDITASVE-KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp TCHHHHHHHHHHTTCCEEEEEESSCSSS-HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEECCchhhc-CCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 4678999999999999999987654321 123467889999999999999999999999999999875 499999998
Q ss_pred CCCch
Q psy4398 260 VEKLP 264 (306)
Q Consensus 260 ~p~~~ 264 (306)
+|.+.
T Consensus 109 ~p~~~ 113 (253)
T 1thf_D 109 NPSLI 113 (253)
T ss_dssp CTHHH
T ss_pred ChHHH
Confidence 88543
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.1e-05 Score=71.69 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=115.9
Q ss_pred CCceEEEecCCCHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEe
Q psy4398 101 KNKIILQIGTADPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKI 176 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 176 (306)
..|+..++...+++++.+.++.+ ++ ||..+-+.+|.+ +++.-.+.++++|+.+ +.++.+..
T Consensus 156 ~v~~y~s~g~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~---------------~~~~d~~~v~avR~a~G~~~~l~vDa 220 (383)
T 3toy_A 156 PIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHG---------------DLATDEAMIKGLRALLGPDIALMLDF 220 (383)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTSCCCEEEEECCSS---------------CHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred ceEEeEecCCCCHHHHHHHHHHHHHccCCcEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence 34666666557888888777654 67 999999987753 3455567888999887 56788888
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccc
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRN 256 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGra 256 (306)
..+|+.+++.++++.+++.|+++|- ++ ..+.+++..+++++.+++||++...+.+..+++++++.+. ...
T Consensus 221 N~~~~~~~A~~~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a--~d~ 290 (383)
T 3toy_A 221 NQSLDPAEATRRIARLADYDLTWIE-------EP-VPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGA--SDF 290 (383)
T ss_dssp TTCSCHHHHHHHHHHHGGGCCSEEE-------CC-SCTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTC--CSE
T ss_pred CCCCCHHHHHHHHHHHHhhCCCEEE-------CC-CCcchHHHHHHHHhhcCCCEEeCCCcCCHHHHHHHHHcCC--CCE
Confidence 8889999999999999999999884 22 2345889999999999999999999999999999987532 001
Q ss_pred cCCCC-Cch----HHHHHHHHHhcCCCCC
Q psy4398 257 HYPVE-KLP----KTILYAHCKYKRFEVP 280 (306)
Q Consensus 257 ll~~p-~~~----~~~l~~~~~~~g~~~~ 280 (306)
+.-++ .+. -+.+.+..+++|++..
T Consensus 291 v~ik~~~~GGit~~~~ia~~A~~~gi~~~ 319 (383)
T 3toy_A 291 IMPDLMKVGGITGWLNVAGQADAASIPMS 319 (383)
T ss_dssp ECCCTTTTTHHHHHHHHHHHHHHHTCCBC
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCEEe
Confidence 11222 221 1267778888898843
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=76.28 Aligned_cols=169 Identities=10% Similarity=0.090 Sum_probs=114.3
Q ss_pred CCceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccc---cCCccc----------------cccCChHHHHHH
Q psy4398 101 KNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSL---TGGMGA----------------ALLSTPDIACNI 160 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~---~~~~G~----------------~l~~~~~~~~ei 160 (306)
..|+-....+.++++..+.++.. ++||..+-+.+|.|..... ..+.+. ...+..++..++
T Consensus 138 ~v~~y~~~~~~~~~~~~~~~~~~~~~Gf~~iKikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 217 (426)
T 4e4f_A 138 GVMVYCHTTGHSIDEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTPKL 217 (426)
T ss_dssp SEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEECC-------------------CCSEESSSCCEEEECHHHHHHHHHHH
T ss_pred ceeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCCccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 34666667778888776666544 5699999999987642100 000000 001123566789
Q ss_pred HHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC
Q psy4398 161 LTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK 238 (306)
Q Consensus 161 v~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~ 238 (306)
++++|+++ ++++.+....+|+.+++.++++.|++.|+++|. ++. .+.+++..+++++.+++||++.+.+.
T Consensus 218 v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~iPIa~dE~~~ 289 (426)
T 4e4f_A 218 FEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWME-------DPT-PAENQACFRLIRQHTVTPIAVGEVFN 289 (426)
T ss_dssp HHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEE-------CCS-CCSSGGGGHHHHTTCCSCEEECTTCC
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEE-------CCC-ChHHHHHHHHHHhcCCCCEEeCCCcC
Confidence 99999998 578888888899999999999999999999985 222 24578888999999999999999999
Q ss_pred CHHHHHHHHHhhhhhccccCCCC-Cch----HHHHHHHHHhcCCCC
Q psy4398 239 EIVDYGGVFSLNCAFLRNHYPVE-KLP----KTILYAHCKYKRFEV 279 (306)
Q Consensus 239 s~~~~~~~l~~~v~vGrall~~p-~~~----~~~l~~~~~~~g~~~ 279 (306)
+.++++++++.+. ...+.-++ .+. -+.+.+..+++|++.
T Consensus 290 ~~~~~~~~i~~ga--~d~v~~k~~~~GGit~~~~ia~~A~~~gi~v 333 (426)
T 4e4f_A 290 SIWDCKQLIEEQL--IDYIRTTITHAGGITGMRRIADFASLYQVRT 333 (426)
T ss_dssp SGGGTHHHHHTTC--CSEECCCTTTTTHHHHHHHHHHHHHTTTCEE
T ss_pred CHHHHHHHHHcCC--CCEEEeCccccCCHHHHHHHHHHHHHcCCEE
Confidence 9999999987532 00111122 221 126677788888873
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.3e-05 Score=68.23 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=96.8
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
+.|++..=+..++.+..++ ...|+|+|=|.... + +++.+.++++..++ .+..+.+-+.
T Consensus 113 ~lPvl~kdfiid~~qv~~A---~~~GAD~VlLi~a~--------------l-~~~~l~~l~~~a~~-lGl~~lvev~--- 170 (272)
T 3qja_A 113 SIPVLRKDFVVQPYQIHEA---RAHGADMLLLIVAA--------------L-EQSVLVSMLDRTES-LGMTALVEVH--- 170 (272)
T ss_dssp SSCEEEESCCCSHHHHHHH---HHTTCSEEEEEGGG--------------S-CHHHHHHHHHHHHH-TTCEEEEEES---
T ss_pred CCCEEECccccCHHHHHHH---HHcCCCEEEEeccc--------------C-CHHHHHHHHHHHHH-CCCcEEEEcC---
Confidence 3566654344555444333 23599999985331 1 24456777777665 5777777766
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhcc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLR 255 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGr 255 (306)
+.++ ++.+.+.|+|.|.++++..... +.+++.+.++.+.+ ++|+|+.|||.+++++.++.+.| +.+|+
T Consensus 171 t~ee----~~~A~~~Gad~IGv~~r~l~~~---~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGs 243 (272)
T 3qja_A 171 TEQE----ADRALKAGAKVIGVNARDLMTL---DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGE 243 (272)
T ss_dssp SHHH----HHHHHHHTCSEEEEESBCTTTC---CBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred CHHH----HHHHHHCCCCEEEECCCccccc---ccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcH
Confidence 3232 3344567999999997653322 23677888999888 79999999999999999999875 59999
Q ss_pred ccCCCCCchHHHHHHHHHh
Q psy4398 256 NHYPVEKLPKTILYAHCKY 274 (306)
Q Consensus 256 all~~p~~~~~~l~~~~~~ 274 (306)
+++..+. +...++++.+.
T Consensus 244 al~~a~d-p~~~~~~l~~~ 261 (272)
T 3qja_A 244 GLVTSGD-PRAAVADLVTA 261 (272)
T ss_dssp HHHTCSC-HHHHHHHHHTT
T ss_pred HHhCCCC-HHHHHHHHHhh
Confidence 9987553 33445555543
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-05 Score=72.17 Aligned_cols=150 Identities=13% Similarity=0.157 Sum_probs=112.3
Q ss_pred ceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccC
Q psy4398 103 KIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVF 179 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g 179 (306)
|....+...+++++.+.++.+ ++||..+-+.+|+ +++.-.+.++++|+.+ +.++.+....+
T Consensus 131 ~~~~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~----------------~~~~d~~~v~avR~~~g~~~~l~vDaN~~ 194 (368)
T 3q45_A 131 QTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGG----------------SKELDVERIRMIREAAGDSITLRIDANQG 194 (368)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCeEEEEecC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 444567777899988877755 4699999998764 2445567888999887 47788888878
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCC
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYP 259 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~ 259 (306)
|+.+++.++++.+++.|+++|- ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. ...+.-
T Consensus 195 ~~~~~A~~~~~~l~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~--~d~v~~ 264 (368)
T 3q45_A 195 WSVETAIETLTLLEPYNIQHCE-------EPV-SRNLYTALPKIRQACRIPIMADESCCNSFDAERLIQIQA--CDSFNL 264 (368)
T ss_dssp BCHHHHHHHHHHHGGGCCSCEE-------CCB-CGGGGGGHHHHHHTCSSCEEESTTCCSHHHHHHHHHTTC--CSEEEE
T ss_pred CChHHHHHHHHHHhhcCCCEEE-------CCC-ChhHHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCC--CCeEEe
Confidence 9999999999999999999885 222 244778889999999999999999999999999987532 000111
Q ss_pred CC-Cc----hHHHHHHHHHhcCCC
Q psy4398 260 VE-KL----PKTILYAHCKYKRFE 278 (306)
Q Consensus 260 ~p-~~----~~~~l~~~~~~~g~~ 278 (306)
++ .+ .-+.+.++.+++|++
T Consensus 265 k~~~~GGit~~~~i~~~A~~~gi~ 288 (368)
T 3q45_A 265 KLSKSAGITNALNIIRLAEQAHMP 288 (368)
T ss_dssp CTTTTTSHHHHHHHHHHHHHTTCC
T ss_pred chhhcCCHHHHHHHHHHHHHcCCc
Confidence 22 11 223677778888887
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-05 Score=69.33 Aligned_cols=126 Identities=16% Similarity=0.149 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccC-CChHHHHHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVF-HNEADTIALCKRLE 193 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g-~~~~~~~~~a~~l~ 193 (306)
..++...++.|+|.|++.+. +|.....+.+.+.+=++++++.++ .|+-|=+-.+ .+.++....++.+.
T Consensus 114 v~Ea~~Ai~~GAdEIDmViN----------ig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~ 183 (260)
T 3r12_A 114 AHEAIFAVESGADEIDMVIN----------VGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISK 183 (260)
T ss_dssp HHHHHHHHHHTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEee----------hhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33444455669999998532 444445677888888888888774 4433323323 45677889999999
Q ss_pred HcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 194 ACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 194 ~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
++|+|+|-.+- +...+.+.++.++.+++.+ +++|-++|||+|.+++.+++++|+ -+|+
T Consensus 184 eaGADfVKTST----Gf~~~GAT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aGA~RiGt 244 (260)
T 3r12_A 184 LAGAHFVKTST----GFGTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGT 244 (260)
T ss_dssp HTTCSEEECCC----SSSSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HhCcCEEEcCC----CCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeec
Confidence 99999997542 2222335677777777776 699999999999999999999876 3443
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.4e-05 Score=72.45 Aligned_cols=152 Identities=12% Similarity=0.111 Sum_probs=113.3
Q ss_pred CceEEEecC---CCHHHHHHHHHH-Hhc---CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccE
Q psy4398 102 NKIILQIGT---ADPERALEAAKK-VEH---DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPV 172 (306)
Q Consensus 102 ~p~ivql~g---~~~~~~~~aa~~-~~~---g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv 172 (306)
.|+..++++ .+++++.+.++. +++ ||..+-+.+|.+ +++.-.+.++++|+.+ +.++
T Consensus 158 v~~y~s~g~~~~~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~~---------------~~~~d~~~v~avR~a~G~~~~l 222 (390)
T 3ugv_A 158 VKAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRD---------------DPAVDIETAEAVWDAVGRDTAL 222 (390)
T ss_dssp EEEEECSCCCSSCHHHHHHHHHHHHHTTCTTCCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSEE
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHhhhCCCcEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCEE
Confidence 455555555 678888777664 467 999999987753 2455567888999887 5688
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhh
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCA 252 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~ 252 (306)
.+....+|+.+++.++++.+++.|+++|- ++. .+.+++..+++++.+++||++...+.+..+++++++.+.
T Consensus 223 ~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a- 293 (390)
T 3ugv_A 223 MVDFNQGLDMAEAMHRTRQIDDLGLEWIE-------EPV-VYDNFDGYAQLRHDLKTPLMIGENFYGPREMHQALQAGA- 293 (390)
T ss_dssp EEECTTCCCHHHHHHHHHHHTTSCCSEEE-------CCS-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTC-
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCCCEEE-------CCC-CcccHHHHHHHHHhcCCCEEeCCCcCCHHHHHHHHHcCC-
Confidence 88888889999999999999999999884 222 345889999999999999999999999999999987532
Q ss_pred hccccCCCCCchH-------HHHHHHHHhcCCCCC
Q psy4398 253 FLRNHYPVEKLPK-------TILYAHCKYKRFEVP 280 (306)
Q Consensus 253 vGrall~~p~~~~-------~~l~~~~~~~g~~~~ 280 (306)
.-+-+|...+ +.+.+..+++|++..
T Consensus 294 ---~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~ 325 (390)
T 3ugv_A 294 ---CDLVMPDFMRIGGVSGWMRAAGVAGAWGIPMS 325 (390)
T ss_dssp ---CSEECCBHHHHTHHHHHHHHHHHHHHHTCCBC
T ss_pred ---CCEEEeCccccCCHHHHHHHHHHHHHcCCEEe
Confidence 1112232222 256667778888743
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-05 Score=68.96 Aligned_cols=87 Identities=15% Similarity=0.123 Sum_probs=61.5
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCC--CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCc
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPR--HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKL 263 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~--~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~ 263 (306)
++.+.+.|+|+|.+.......... .+..|+.++++++.+++||++.||| +.+++.++++.| +++|++++..+..
T Consensus 123 ~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~vgs~i~~~~d~ 201 (221)
T 1yad_A 123 AVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIAVMSGIFSSAEP 201 (221)
T ss_dssp HHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEEESHHHHTSSSH
T ss_pred HHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhHHhhCCCCH
Confidence 566678999999986532111111 2467899999998889999999999 899999999875 5999999876542
Q ss_pred hH-H-HHHHHHHhcC
Q psy4398 264 PK-T-ILYAHCKYKR 276 (306)
Q Consensus 264 ~~-~-~l~~~~~~~g 276 (306)
.+ . .+.+.+++.+
T Consensus 202 ~~~~~~~~~~~~~~~ 216 (221)
T 1yad_A 202 LEAARRYSRKLKEMR 216 (221)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 22 2 5555555555
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.3e-05 Score=71.25 Aligned_cols=155 Identities=13% Similarity=0.116 Sum_probs=113.9
Q ss_pred CceEEEecC---CCHHHHHHHHHH-Hhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEE
Q psy4398 102 NKIILQIGT---ADPERALEAAKK-VEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSC 174 (306)
Q Consensus 102 ~p~ivql~g---~~~~~~~~aa~~-~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~v 174 (306)
.|+..++.+ .+++++.+.++. +++ ||..+-+++|+|. ++.-.+.++++|+.+ +.++.+
T Consensus 138 v~~y~s~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~---------------~~~d~~~v~avR~~~g~~~~l~v 202 (372)
T 3tj4_A 138 VEAYNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGHDD---------------PNIDIARLTAVRERVDSAVRIAI 202 (372)
T ss_dssp EEEEECTTCCTTSCHHHHHHHHHHHHHTTCCCEEEEECCCSS---------------HHHHHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEecCCccCCCHHHHHHHHHHHHHccCCCEEEEcCCCCC---------------HHHHHHHHHHHHHHcCCCCcEEe
Confidence 455554333 378888776664 467 9999999988643 344577889999988 578888
Q ss_pred EeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhc
Q psy4398 175 KIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFL 254 (306)
Q Consensus 175 Kir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vG 254 (306)
....+|+.+++.++++.+++.|+++|- ++. .+.+++..+++++.+++||++...+.+.++++++++.+. .
T Consensus 203 Dan~~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~--~ 272 (372)
T 3tj4_A 203 DGNGKWDLPTCQRFCAAAKDLDIYWFE-------EPL-WYDDVTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGA--V 272 (372)
T ss_dssp ECTTCCCHHHHHHHHHHTTTSCEEEEE-------SCS-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTC--C
T ss_pred eCCCCCCHHHHHHHHHHHhhcCCCEEE-------CCC-CchhHHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCC--C
Confidence 888889999999999999999988774 222 245889999999999999999999999999999987532 0
Q ss_pred cccCCCC-Cc----hHHHHHHHHHhcCCCCCc
Q psy4398 255 RNHYPVE-KL----PKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 255 rall~~p-~~----~~~~l~~~~~~~g~~~~~ 281 (306)
..+.-++ .+ .-+.+.++.+++|++...
T Consensus 273 d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~ 304 (372)
T 3tj4_A 273 AYVQPDVTRLGGITEYIQVADLALAHRLPVVP 304 (372)
T ss_dssp SEECCCTTTTTHHHHHHHHHHHHHHTTCCBCC
T ss_pred CEEEeCccccCCHHHHHHHHHHHHHcCCEEEe
Confidence 0111222 22 123677788889988543
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=98.20 E-value=2.2e-05 Score=68.19 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=87.3
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C-C----ChHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F-H----NEADTIAL 188 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g-~----~~~~~~~~ 188 (306)
..++...++.|+|.|++.+. +|.....+.+.+.+-++++++.++ ...+|+=+ + . +.++....
T Consensus 83 ~~E~~~Ai~~GAdEIDmVin----------ig~lk~g~~~~v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~eei~~a 151 (231)
T 3ndo_A 83 ATEAELAVAAGATEIDMVID----------VGAALAGDLDAVSADITAVRKAVR-AATLKVIVESAALLEFSGEPLLADV 151 (231)
T ss_dssp HHHHHHHHHTTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEee----------hHhhhcccHHHHHHHHHHHHHHcc-CCceEEEEECcccCCCCCHHHHHHH
Confidence 34444455679999998643 454455677888888888888884 23345433 2 3 56678889
Q ss_pred HHHHHHcCCcEEEEcccCCCCCC-CCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERP-RHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~-~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
++...++|+|+|-.+-. .. .+.+.++.++.+++.+ +++|-++|||+|.+++.++++.|+
T Consensus 152 ~~ia~~aGADfVKTSTG----f~~~~gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa 213 (231)
T 3ndo_A 152 CRVARDAGADFVKTSTG----FHPSGGASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGA 213 (231)
T ss_dssp HHHHHHTTCSEEECCCS----CCTTCSCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTTC
T ss_pred HHHHHHHCcCEEEcCCC----CCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhcc
Confidence 99999999999975422 11 2345677777777776 699999999999999999999866
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=71.08 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCcccccc----------CChHHHHHHHHHHHhcc-cccEEEEecc
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALL----------STPDIACNILTTLISNL-SIPVSCKIRV 178 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~----------~~~~~~~eiv~~v~~~~-~~pv~vKir~ 178 (306)
.+.+.+.+.++.+.+ |+|.|||++.- .....| |..+. -+.+.+.++++++|+.+ +.|+.+ +.
T Consensus 28 p~~~~~~~~~~~l~~~G~D~IElG~P~--sdP~ad--gp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~-m~- 101 (262)
T 2ekc_A 28 PDYETSLKAFKEVLKNGTDILEIGFPF--SDPVAD--GPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLL-MT- 101 (262)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCC--SCCTTS--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEE-EC-
T ss_pred CChHHHHHHHHHHHHcCCCEEEECCCC--CCcccc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEE-Ee-
Confidence 456788888887765 99999996532 111111 11110 24566788999999888 889877 21
Q ss_pred CCChH---HHHHHHHHHHHcCCcEEEEcccC-----------------------CC-------------CC---------
Q psy4398 179 FHNEA---DTIALCKRLEACGIIAIGVHGRT-----------------------KA-------------ER--------- 210 (306)
Q Consensus 179 g~~~~---~~~~~a~~l~~~G~d~i~v~~~~-----------------------~~-------------~~--------- 210 (306)
.++.- ...++++.+.++|+|++++.+.. .. ..
T Consensus 102 y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~vs~~g 181 (262)
T 2ekc_A 102 YYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTG 181 (262)
T ss_dssp CHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEESSCC
T ss_pred cCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 12211 13577777888888887754321 00 00
Q ss_pred CC---CCC----cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH--hhhhhccccCC
Q psy4398 211 PR---HRN----RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS--LNCAFLRNHYP 259 (306)
Q Consensus 211 ~~---~p~----~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~--~~v~vGrall~ 259 (306)
.. .+. ..++++++++.+++||+..+||.+++++.++.. .++.+|++++.
T Consensus 182 ~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~~~~gADgvIVGSai~~ 239 (262)
T 2ekc_A 182 TTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHAREIGSFADGVVVGSALVK 239 (262)
T ss_dssp ---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHHHHTTSSEEEECHHHHH
T ss_pred ccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHcCCCEEEECHHHHh
Confidence 00 011 137889999999999999999999999999543 26799999875
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-05 Score=72.27 Aligned_cols=151 Identities=14% Similarity=0.163 Sum_probs=111.1
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~ 178 (306)
.|+...+...++++..+.++.. ++||..+-+.+|+. +++.-.+.++++|+.+ +.++.+....
T Consensus 136 v~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~~~g~~~~l~vDan~ 200 (377)
T 3my9_A 136 IPLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVK---------------PHAEELRILETMRGEFGERIDLRLDFNQ 200 (377)
T ss_dssp EEBCEEECCSSHHHHHHHHHHHTTTTCCEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEccCCC---------------cHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 4555666666787776666554 45999999987752 2444567788888887 5688888888
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHY 258 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall 258 (306)
+|+.+++.++++.+++.|+++|- ++ ..+.+++..+++++.+++||++...+.+..+++++++.+. .-+
T Consensus 201 ~~~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~----~d~ 268 (377)
T 3my9_A 201 ALTPFGAMKILRDVDAFRPTFIE-------QP-VPRRHLDAMAGFAAALDTPILADESCFDAVDLMEVVRRQA----ADA 268 (377)
T ss_dssp CCCTTTHHHHHHHHHTTCCSCEE-------CC-SCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTC----CSE
T ss_pred CcCHHHHHHHHHHHhhcCCCEEE-------CC-CCccCHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCC----CCE
Confidence 89999999999999999998884 22 2345789999999999999999999999999999887532 111
Q ss_pred CCCCc-------hHHHHHHHHHhcCCCC
Q psy4398 259 PVEKL-------PKTILYAHCKYKRFEV 279 (306)
Q Consensus 259 ~~p~~-------~~~~l~~~~~~~g~~~ 279 (306)
-+|.. .-+.+.++.+++|++.
T Consensus 269 v~~k~~~~GGit~~~~i~~~a~~~gi~~ 296 (377)
T 3my9_A 269 ISVKIMKCGGLMKAQSLMAIADTAGLPG 296 (377)
T ss_dssp EECCHHHHTSHHHHHHHHHHHHHHTCCE
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCeE
Confidence 11111 1125566777888773
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-05 Score=67.02 Aligned_cols=121 Identities=15% Similarity=0.134 Sum_probs=83.9
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc---CCChHHHHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV---FHNEADTIALCKRL 192 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~---g~~~~~~~~~a~~l 192 (306)
..++...++.|+|.|++.+. +|.....+.+.+.+-+.++++.++.+ .+|+=+ -.+.++....++..
T Consensus 74 ~~e~~~Ai~~GAdevd~vin----------ig~~~~g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~ia 142 (220)
T 1ub3_A 74 ALEAALACARGADEVDMVLH----------LGRAKAGDLDYLEAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEAA 142 (220)
T ss_dssp HHHHHHHHHTTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeccc----------chhhhCCCHHHHHHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHHH
Confidence 34444445679999999643 34333456677777778888877433 445221 24667788999999
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.++|+|+|-.+-. ...+.+..+.++.+++.+ ++||-++|||+|.+++.++++.|+
T Consensus 143 ~eaGADfVKTsTG----f~~~gat~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~aGa 199 (220)
T 1ub3_A 143 IRGGADFLKTSTG----FGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGA 199 (220)
T ss_dssp HHHTCSEEECCCS----SSSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTC
T ss_pred HHhCCCEEEeCCC----CCCCCCCHHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHHCCC
Confidence 9999999975421 112334666666666654 699999999999999999998755
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3e-05 Score=72.82 Aligned_cols=122 Identities=14% Similarity=0.164 Sum_probs=98.8
Q ss_pred CceEEEec----CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEE-
Q psy4398 102 NKIILQIG----TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVS- 173 (306)
Q Consensus 102 ~p~ivql~----g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~- 173 (306)
.|+...++ ..+++++++.++.+. +||..+.+++|+ +++.-.+.++++|+++ ++++.
T Consensus 128 v~~y~t~~~~~~~~~~e~~~~~a~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avR~a~g~~~~l~~ 191 (391)
T 3gd6_A 128 IKVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGK----------------NLDADEEFLSRVKEEFGSRVRIKS 191 (391)
T ss_dssp EEBCEEECCCSSTTHHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHHGGGCEEEE
T ss_pred EEeeEEecccccCCCHHHHHHHHHHHHHcCCCEEEEeeCC----------------CHHHHHHHHHHHHHHcCCCCcEEE
Confidence 45666776 677888888877664 699999999875 2455577888998887 46788
Q ss_pred EEeccCCChHHHHHHHHHHHHcCC--cEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 174 CKIRVFHNEADTIALCKRLEACGI--IAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 174 vKir~g~~~~~~~~~a~~l~~~G~--d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+....+|+.+++.++++.+++.|+ ++|. ++. .+.+++..+++++.+++|| ...+.+.++++++++.
T Consensus 192 vDan~~~~~~~A~~~~~~l~~~~i~~~~iE-------qP~-~~~d~~~~~~l~~~~~iPI--dE~~~~~~~~~~~~~~ 259 (391)
T 3gd6_A 192 YDFSHLLNWKDAHRAIKRLTKYDLGLEMIE-------SPA-PRNDFDGLYQLRLKTDYPI--SEHVWSFKQQQEMIKK 259 (391)
T ss_dssp EECTTCSCHHHHHHHHHHHTTCCSSCCEEE-------CCS-CTTCHHHHHHHHHHCSSCE--EEECCCHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHHhcCCCcceec-------CCC-ChhhHHHHHHHHHHcCCCc--CCCCCCHHHHHHHHHc
Confidence 888778999999999999999999 7775 222 2457899999999999999 7889999999999875
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.13 E-value=5.5e-05 Score=67.21 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=81.1
Q ss_pred HHhcCCCEEEEcc--CCCccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEecc-CC------ChHHHHHHH
Q psy4398 122 KVEHDVAAIDINM--GCPKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKIRV-FH------NEADTIALC 189 (306)
Q Consensus 122 ~~~~g~d~veln~--gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~-g~------~~~~~~~~a 189 (306)
.++.|+|.|++.. +. .+.+...+-++++++.+ ++|+++=... |. +.+.....+
T Consensus 101 Ai~~Ga~~v~~~~nig~---------------~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~ 165 (263)
T 1w8s_A 101 AVSLGASAVGYTIYPGS---------------GFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAA 165 (263)
T ss_dssp HHHTTCSEEEEEECTTS---------------TTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHH
T ss_pred HHHCCCCEEEEEEecCC---------------cCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHH
Confidence 3456999999854 42 12233344444444333 7787766543 11 445566678
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCC-cEEEecCCC--CHHHHHHHH----Hh---hhhhccccCC
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKI-PVIANGGSK--EIVDYGGVF----SL---NCAFLRNHYP 259 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~i-pvia~GGI~--s~~~~~~~l----~~---~v~vGrall~ 259 (306)
+.+.+.|+|+|-+.- |...+.++++++.++. ||++.|||+ |.+++.+.+ +. |+.+||+++.
T Consensus 166 ~~a~~~GAD~vkt~~---------~~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~ 236 (263)
T 1w8s_A 166 RIALELGADAMKIKY---------TGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQ 236 (263)
T ss_dssp HHHHHHTCSEEEEEC---------CSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred HHHHHcCCCEEEEcC---------CCCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcC
Confidence 999999999998761 1266889999988877 999999999 888887766 44 4599999988
Q ss_pred CCC
Q psy4398 260 VEK 262 (306)
Q Consensus 260 ~p~ 262 (306)
.|.
T Consensus 237 ~~d 239 (263)
T 1w8s_A 237 RRD 239 (263)
T ss_dssp STT
T ss_pred CcC
Confidence 664
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.9e-05 Score=72.15 Aligned_cols=142 Identities=8% Similarity=-0.009 Sum_probs=103.5
Q ss_pred HHHHHHHHH-hcCCCEEEEc-cCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCC-ChHHHHHHH
Q psy4398 115 RALEAAKKV-EHDVAAIDIN-MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFH-NEADTIALC 189 (306)
Q Consensus 115 ~~~~aa~~~-~~g~d~veln-~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~-~~~~~~~~a 189 (306)
++++.++.+ ++||..+-++ +|.+ ..+++.-.++++++|+++ +.++.+....+| +.+++.+++
T Consensus 155 ~~~~~a~~~~~~G~~~~K~~k~g~~-------------~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~ 221 (394)
T 3mqt_A 155 AYKPLIAKAKERGAKAVKVCIIPND-------------KVSDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTF 221 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCT-------------TSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEecccCCC-------------ccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHH
Confidence 455555544 4599999993 4321 124677788999999987 578888888889 999999999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-C----ch
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-K----LP 264 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~----~~ 264 (306)
+.|++.|+++|. ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. ...+.-++ . ..
T Consensus 222 ~~L~~~~i~~iE-------eP~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~--~d~v~~k~~~~GGit~ 291 (394)
T 3mqt_A 222 RQLEDIDLYFIE-------ACL-QHDDLIGHQKLAAAINTRLCGAEMSTTRFEAQEWLEKTG--ISVVQSDYNRCGGVTE 291 (394)
T ss_dssp HHTGGGCCSEEE-------SCS-CTTCHHHHHHHHHHSSSEEEECTTCCHHHHHHHHHHHHC--CSEECCCTTTSSCHHH
T ss_pred HHHhhcCCeEEE-------CCC-CcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCC--CCeEecCccccCCHHH
Confidence 999999999985 222 345889999999999999999999999999999987632 00011122 1 12
Q ss_pred HHHHHHHHHhcCCCC
Q psy4398 265 KTILYAHCKYKRFEV 279 (306)
Q Consensus 265 ~~~l~~~~~~~g~~~ 279 (306)
-+.+.+..+++|++.
T Consensus 292 ~~~ia~~A~~~gi~~ 306 (394)
T 3mqt_A 292 LLRIMDICEHHNAQL 306 (394)
T ss_dssp HHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHcCCEE
Confidence 235667777888773
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.1e-05 Score=75.95 Aligned_cols=121 Identities=15% Similarity=0.073 Sum_probs=84.1
Q ss_pred HHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHc
Q psy4398 118 EAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEAC 195 (306)
Q Consensus 118 ~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~ 195 (306)
+.++.+ +.|+|.|.++... .+.+...+.++.+++.+ ++|+..+-- .+ .+.++.+.++
T Consensus 236 ~~a~~l~~~G~d~ivi~~a~---------------g~~~~~~~~i~~l~~~~p~~pvi~G~v--~t----~~~a~~~~~~ 294 (491)
T 1zfj_A 236 ERAEALFEAGADAIVIDTAH---------------GHSAGVLRKIAEIRAHFPNRTLIAGNI--AT----AEGARALYDA 294 (491)
T ss_dssp HHHHHHHHHTCSEEEECCSC---------------TTCHHHHHHHHHHHHHCSSSCEEEEEE--CS----HHHHHHHHHT
T ss_pred HHHHHHHHcCCCeEEEeeec---------------CcchhHHHHHHHHHHHCCCCcEeCCCc--cC----HHHHHHHHHc
Confidence 334444 4599999997421 12345567888888888 788875432 22 3667788899
Q ss_pred CCcEEEEccc------C--CCCCCCCCCcHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 196 GIIAIGVHGR------T--KAERPRHRNRIEMIRTLTQ---HLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 196 G~d~i~v~~~------~--~~~~~~~p~~~~~v~~i~~---~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
|+|+|.+... + .. .. +.+.++.+.++.+ ..++|||+.|||++..|+.++++.|+ ++||+++..+
T Consensus 295 Gad~I~vg~g~g~~~~tr~~~-~~-~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~~~ 372 (491)
T 1zfj_A 295 GVDVVKVGIGPGSICTTRVVA-GV-GVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTD 372 (491)
T ss_dssp TCSEEEECSSCCTTBCHHHHT-CC-CCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBS
T ss_pred CCCEEEECccCCcceEEeeec-CC-CCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhCCC
Confidence 9999988421 0 11 11 2236666666665 46899999999999999999998754 9999998643
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=5.6e-05 Score=70.32 Aligned_cols=152 Identities=12% Similarity=0.144 Sum_probs=111.2
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEec
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir 177 (306)
.|+...++..+++++.+.++.+ ++ ||..+-+.+|... .+.-.+.++++|+.+ +.++.+...
T Consensus 129 v~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~K~g~~~---------------~~~d~~~v~avR~a~g~~~~l~vDan 193 (367)
T 3dg3_A 129 MRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRRP---------------VQLDTAVVRALRERFGDAIELYVDGN 193 (367)
T ss_dssp EEEEEEEESSCHHHHHHHHHHHHHHHCCCEEEEECCCSS---------------THHHHHHHHHHHHHHGGGSEEEEECT
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHhcCccEEEEeeCCCh---------------hhhHHHHHHHHHHHhCCCCEEEEECC
Confidence 4566667777898888777654 67 9999999876511 113356788888887 467888888
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh----hh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC----AF 253 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v----~v 253 (306)
.+|+.+++.++++.+++.|+++|. ++ ..+.+++..+++++.+++||++.+.+.+.++++++++.+. ++
T Consensus 194 ~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~ 265 (367)
T 3dg3_A 194 RGWSAAESLRAMREMADLDLLFAE-------EL-CPADDVLSRRRLVGQLDMPFIADESVPTPADVTREVLGGSATAISI 265 (367)
T ss_dssp TCSCHHHHHHHHHHTTTSCCSCEE-------SC-SCTTSHHHHHHHHHHCSSCEEECTTCSSHHHHHHHHHHTSCSEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEE-------CC-CCcccHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence 889999999999999999998885 22 2345788999999999999999999999999999988632 11
Q ss_pred ccccCCCCCchHHHHHHHHHhcCCC
Q psy4398 254 LRNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 254 Grall~~p~~~~~~l~~~~~~~g~~ 278 (306)
=-.-. + ...-+.+.++.+++|++
T Consensus 266 k~~~~-G-it~~~~ia~~A~~~gi~ 288 (367)
T 3dg3_A 266 KTART-G-FTGSTRVHHLAEGLGLD 288 (367)
T ss_dssp CHHHH-T-THHHHHHHHHHHHHTCE
T ss_pred ehhhh-h-HHHHHHHHHHHHHcCCe
Confidence 00000 1 01123566778888887
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-05 Score=70.01 Aligned_cols=152 Identities=15% Similarity=0.093 Sum_probs=101.2
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
.++.+|...+...+.+..+.+.+ |+|.+++-.- | |. +..+..+-.++++++|+.++.|+.+-+=. .+
T Consensus 6 ~i~psila~D~~~l~~~i~~~~~~Gad~ihldi~--------D--G~-fvp~~~~g~~~v~~lr~~~~~~~~vhlmv-~d 73 (230)
T 1tqj_A 6 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVM--------D--GR-FVPNITIGPLIVDAIRPLTKKTLDVHLMI-VE 73 (230)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEE--------B--SS-SSSCBCBCHHHHHHHGGGCCSEEEEEEES-SS
T ss_pred EEEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEE--------e--cC-CCcchhhhHHHHHHHHhhcCCcEEEEEEc-cC
Confidence 36778888888888888888765 8999888641 1 11 11122222378888888877787755543 23
Q ss_pred hHHHHHHHHHHHHcCCcEEEEccc--CC---------------------------------------------CCCC---
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGR--TK---------------------------------------------AERP--- 211 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~--~~---------------------------------------------~~~~--- 211 (306)
+ .++++.+.++|+|++++|.- .. .+.+
T Consensus 74 p---~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg~ggq 150 (230)
T 1tqj_A 74 P---EKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQ 150 (230)
T ss_dssp G---GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC----C
T ss_pred H---HHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccccCCc
Confidence 3 23556777788888888765 20 0000
Q ss_pred -CCCCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCchHHHHHHH
Q psy4398 212 -RHRNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKLPKTILYAH 271 (306)
Q Consensus 212 -~~p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~~~~~l~~~ 271 (306)
..+..++.++++++.+ ++||.+-|||+. +++.++.+.| +.+||+++..+. ++..++++
T Consensus 151 ~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~a~d-~~~~~~~l 217 (230)
T 1tqj_A 151 SFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFNAPN-YAEAIAGV 217 (230)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHTSSC-HHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHCCCC-HHHHHHHH
Confidence 1123478888888887 899999999997 8888888865 499999997554 34444444
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.1e-05 Score=70.27 Aligned_cols=141 Identities=11% Similarity=0.084 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCcccccc----------CChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 112 DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL----------STPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 112 ~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~----------~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
+.+...+.++.+.+++|.|||.+. ......| |..+. -+.+.+.++++++|+.+++|+.+=.. ++
T Consensus 28 ~~~~~~~~~~~l~~~aD~IElG~P--fsdP~ad--Gp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y--~n 101 (271)
T 1ujp_A 28 SREGFLQAVEEVLPYADLLEIGLP--YSDPLGD--GPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTY--LN 101 (271)
T ss_dssp CHHHHHHHHHHHGGGCSSEEEECC--CCC------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECC--HH
T ss_pred ChHHHHHHHHHHHhcCCEEEECCC--CCCcccc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEec--Cc
Confidence 456777777766655999999643 2211111 11111 25566788999999888899887311 22
Q ss_pred hH---HHHHHHHHHHHcCCcEEEEcccC--------------------------C----------CCC---------CCC
Q psy4398 182 EA---DTIALCKRLEACGIIAIGVHGRT--------------------------K----------AER---------PRH 213 (306)
Q Consensus 182 ~~---~~~~~a~~l~~~G~d~i~v~~~~--------------------------~----------~~~---------~~~ 213 (306)
+- ...++++.+.++|+|++++-+-+ . ... +.+
T Consensus 102 ~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfiy~vs~~G~TG 181 (271)
T 1ujp_A 102 PVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTG 181 (271)
T ss_dssp HHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC-----
T ss_pred HHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCEEEEecCcccC
Confidence 11 24677777888888877642210 0 000 011
Q ss_pred ------CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccCC
Q psy4398 214 ------RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYP 259 (306)
Q Consensus 214 ------p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~ 259 (306)
+...++++++++.+++||++.|||+|++++.++ .. ++.+|+++.+
T Consensus 182 ~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~-~~ADgVIVGSAi~~ 234 (271)
T 1ujp_A 182 MRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA-AVADGVVVGSALVR 234 (271)
T ss_dssp -------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH-TTSSEEEECHHHHH
T ss_pred CCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh-cCCCEEEEChHHhc
Confidence 123578999999999999999999999999997 42 6799999874
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=2.3e-06 Score=74.72 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
++..++++.++++|+|+|+++...... +..+..++.++++++.+++|++++|||.++++++++++.++ .+|++++.
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~-~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~ 111 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAP-EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 111 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCT-TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 358899999999999999998765432 12234678899999999999999999999999999988754 88999888
Q ss_pred CCCch
Q psy4398 260 VEKLP 264 (306)
Q Consensus 260 ~p~~~ 264 (306)
+|.+.
T Consensus 112 ~~~~~ 116 (253)
T 1h5y_A 112 NPQLV 116 (253)
T ss_dssp CTHHH
T ss_pred CcHHH
Confidence 88543
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.08 E-value=8.7e-06 Score=72.11 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHY 258 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall 258 (306)
.+..++++.++++|++.|.+++....+...+ .+++.++++++.+++||++.|||+++++++++++.+ +.+|++++
T Consensus 30 ~~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g-~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~ 107 (266)
T 2w6r_A 30 ILLRDWVVEVEKRGAGEILLTSIDRDGTKSG-YDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFH 107 (266)
T ss_dssp EEHHHHHHHHHHHTCSEEEEEETTTSSCSSC-CCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCcccCCCc-ccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence 3589999999999999999987765544444 478999999999999999999999999999998875 48999988
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=98.08 E-value=7.2e-05 Score=64.85 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=44.6
Q ss_pred CcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh--hhhhccccCCCCCchHH
Q psy4398 215 NRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYPVEKLPKT 266 (306)
Q Consensus 215 ~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~~p~~~~~ 266 (306)
.+.++++++++.+ ++|++..|||+|++++++++.- ++.+|+++.+||.+.+.
T Consensus 166 ~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~~gAD~VVVGSa~v~~p~~~~~ 220 (228)
T 3vzx_A 166 GDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALK 220 (228)
T ss_dssp CCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHHTTCSEEEECTHHHHCHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhCCCEEEEChHHhcCHHHHHH
Confidence 3789999999999 8999999999999999999841 45999999998855444
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=5.9e-05 Score=71.26 Aligned_cols=159 Identities=12% Similarity=0.101 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccc---cCCcc----ccccC---ChHHHHHHHHHHHhcc--cccEEEEec
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSL---TGGMG----AALLS---TPDIACNILTTLISNL--SIPVSCKIR 177 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~---~~~~G----~~l~~---~~~~~~eiv~~v~~~~--~~pv~vKir 177 (306)
.+++++++.++.+. +||..+-+.++.+..... +.+.+ ..... ..+...++++++|+++ ++++.+...
T Consensus 142 ~~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vDaN 221 (409)
T 3go2_A 142 TDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDLN 221 (409)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 36888888877664 699999998742211000 00111 00101 2456788999999987 578888888
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hh-cc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AF-LR 255 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~v-Gr 255 (306)
.+|+.+++.++++.|++.|+++|.. + +.+++..+++++.+++||++.+.+.+.++++++++.+. .+ --
T Consensus 222 ~~~~~~~A~~~~~~L~~~~i~~iE~-------P---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~ 291 (409)
T 3go2_A 222 FNAKPEGYLKILRELADFDLFWVEI-------D---SYSPQGLAYVRNHSPHPISSCETLFGIREFKPFFDANAVDVAIV 291 (409)
T ss_dssp TCSCHHHHHHHHHHTTTSCCSEEEC-------C---CSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCHHHHHHHHHHHhhcCCeEEEe-------C---cCCHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEe
Confidence 8899999999999999999999972 1 24788999999999999999999999999999988532 00 00
Q ss_pred ccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 256 NHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 256 all~~p~~~~~~l~~~~~~~g~~~ 279 (306)
-+-++-...-+.+.+..+++|++.
T Consensus 292 k~~~GGit~~~~ia~~A~~~gi~~ 315 (409)
T 3go2_A 292 DTIWNGVWQSMKIAAFADAHDINV 315 (409)
T ss_dssp CHHHHCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEE
Confidence 000000112235667777888773
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00012 Score=68.77 Aligned_cols=149 Identities=12% Similarity=0.122 Sum_probs=108.2
Q ss_pred CHHHHHHHHH-HH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 112 DPERALEAAK-KV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 112 ~~~~~~~aa~-~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
++++..+.+. .. ++||..+-+.+|.+.. ......++...+.++++|+++ ++++.+....+|+.+++.+
T Consensus 146 ~~~~~~~~~~~~~~~~Gf~~~K~KvG~~~~--------~d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~ 217 (388)
T 3tcs_A 146 TPRDEAERLKRLRDTQGFTAFKVRAGAEVG--------RNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIE 217 (388)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEECSCTTC--------TTCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEccCCCcc--------cccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHH
Confidence 5665555443 33 4599999999987541 112233566778899999987 5688888888999999999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCCCchH--
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEKLPK-- 265 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p~~~~-- 265 (306)
+++.+++.|+.+|- ++ ..+.+++..+++++.+++||.+...+.+..+++++++.+. .-+-+|...+
T Consensus 218 ~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a----~d~v~~d~~~~G 285 (388)
T 3tcs_A 218 VGHMLQDHGFCHFE-------EP-CPYWELAQTKQVTDALDIDVTGGEQDCDLPTWQRMIDMRA----VDIVQPDILYLG 285 (388)
T ss_dssp HHHHHHHTTCCEEE-------CC-SCTTCHHHHHHHHHHCSSCEEECTTCCCHHHHHHHHHHTC----CSEECCCHHHHT
T ss_pred HHHHHhhcCCeEEE-------CC-CCccCHHHHHHHHHhcCCCEEcCCccCCHHHHHHHHHcCC----CCEEEeCccccC
Confidence 99999999998883 22 2345889999999999999999999999999999987532 1112222221
Q ss_pred -----HHHHHHHHhcCCCCC
Q psy4398 266 -----TILYAHCKYKRFEVP 280 (306)
Q Consensus 266 -----~~l~~~~~~~g~~~~ 280 (306)
+.+.+..+++|++..
T Consensus 286 Git~a~kia~~A~~~gv~~~ 305 (388)
T 3tcs_A 286 GICRTLRVVEMARAAGLPVT 305 (388)
T ss_dssp SHHHHHHHHHHHHHTTCCBC
T ss_pred CHHHHHHHHHHHHHcCCEEE
Confidence 256677788888743
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0001 Score=69.01 Aligned_cols=151 Identities=9% Similarity=0.049 Sum_probs=110.8
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccC
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVF 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g 179 (306)
.|+...+...++++..+.++.+ ++||..+-+.+|.. +++.-.+.++++|+.+ +.++.+....+
T Consensus 138 v~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~a~~~~~l~vDan~~ 202 (385)
T 3i6e_A 138 IPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFR---------------DHAFDIMRLELIARDFPEFRVRVDYNQG 202 (385)
T ss_dssp EEBEEEECCSSHHHHHHHHHHHHHHTCCEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECTTC
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 4566677667787776655544 56999999987642 2444567788888887 56788888888
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCC
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYP 259 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~ 259 (306)
|+.+++.++++.+++.|+++|- ++. .+.+++..+++++.+++||++...+.+..+++++++.+. .-+-
T Consensus 203 ~~~~~A~~~~~~L~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~----~d~v 270 (385)
T 3i6e_A 203 LEIDEAVPRVLDVAQFQPDFIE-------QPV-RAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGI----CDGV 270 (385)
T ss_dssp CCGGGHHHHHHHHHTTCCSCEE-------CCS-CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTC----CSEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEE-------CCC-CcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHcCC----CCEE
Confidence 9999999999999999998884 222 345889999999999999999999999999999887532 1011
Q ss_pred CCCc-------hHHHHHHHHHhcCCCC
Q psy4398 260 VEKL-------PKTILYAHCKYKRFEV 279 (306)
Q Consensus 260 ~p~~-------~~~~l~~~~~~~g~~~ 279 (306)
+|.. .-+.+.++.+++|++.
T Consensus 271 ~~k~~~~GGit~~~~i~~~A~~~gi~~ 297 (385)
T 3i6e_A 271 SIKIMKSGGLTRAQTVARIAAAHGLMA 297 (385)
T ss_dssp EECHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred EecccccCCHHHHHHHHHHHHHcCCEE
Confidence 1111 1125667777888773
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=69.25 Aligned_cols=150 Identities=11% Similarity=0.160 Sum_probs=90.9
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEcc--CC-CccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINM--GC-PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF 179 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~--gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 179 (306)
+..+|...+..++.+.++.+.+ |+|.+.+-. ++ +. ....-.++++++++.++.|+.+-+-..
T Consensus 6 ~~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~--------------~~~~g~~~i~~i~~~~~~~~~v~l~v~ 71 (220)
T 2fli_A 6 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVP--------------NISFGADVVASMRKHSKLVFDCHLMVV 71 (220)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSS--------------CBCBCHHHHHHHHTTCCSEEEEEEESS
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC--------------ccccCHHHHHHHHHhCCCCEEEEEeec
Confidence 5556777888888888888765 899977753 22 11 111113556667776666665544321
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCCCCC-
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AERPRH- 213 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~~~~- 213 (306)
+.++ .++.+.++|+|.+++|+... ...+.+
T Consensus 72 -d~~~---~i~~~~~~gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~ 147 (220)
T 2fli_A 72 -DPER---YVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQ 147 (220)
T ss_dssp -SGGG---GHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSC
T ss_pred -CHHH---HHHHHHHcCCCEEEEccCccccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCccc
Confidence 2222 33666777888887764210 000111
Q ss_pred ---CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCCchHHHHHHHHH
Q psy4398 214 ---RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEKLPKTILYAHCK 273 (306)
Q Consensus 214 ---p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~~~~~~l~~~~~ 273 (306)
+..++.++++++.+ ++|+++.|||+ ++++.++++. ++.+||+++..+. ++..++++.+
T Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~~~d-~~~a~~~~~~ 216 (220)
T 2fli_A 148 AFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKASD-LVSQVQTLRT 216 (220)
T ss_dssp CCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSC-HHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhCCCC-HHHHHHHHHH
Confidence 11235566666655 79999999999 7888888776 4599999997644 4444444443
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.06 E-value=3.1e-05 Score=67.16 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=96.3
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.++..|...+++++.+.++.+.+ |+|.|++.+. .|+ .....++++++++.++.|+.+-+-
T Consensus 12 ~i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~---------------~~~~~~~i~~l~~~~~~~~~v~l~ 76 (230)
T 1rpx_A 12 IVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPN---------------ITIGPLVVDSLRPITDLPLDVHLM 76 (230)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSC---------------BCCCHHHHHHHGGGCCSCEEEEEE
T ss_pred EEEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcccc---------------cccCHHHHHHHHhccCCcEEEEEE
Confidence 35667778888888888887765 9999988641 121 111136677788776667666554
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEccc--CC---------------------------------------------CCC
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGR--TK---------------------------------------------AER 210 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~--~~---------------------------------------------~~~ 210 (306)
. +. ..+.++.+.++|+|+|++|+. .. ...
T Consensus 77 v--nd--~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~~pg 152 (230)
T 1rpx_A 77 I--VE--PDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPG 152 (230)
T ss_dssp S--SS--HHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTT
T ss_pred e--cC--HHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEEcCC
Confidence 2 21 335666677789999888765 20 000
Q ss_pred CCC----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCCchHHHHHHHH
Q psy4398 211 PRH----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEKLPKTILYAHC 272 (306)
Q Consensus 211 ~~~----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~~~~~~l~~~~ 272 (306)
+.+ +..++.++++++.+ ++|+++.|||+ ++++.++++. ++.+||+++..+. +...++++.
T Consensus 153 ~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~a~d-p~~a~~~l~ 224 (230)
T 1rpx_A 153 FGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAPD-YAEAIKGIK 224 (230)
T ss_dssp CSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSC-HHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCC-HHHHHHHHH
Confidence 111 11245667777766 79999999998 7888887776 4599999986444 444444543
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=98.04 E-value=7.1e-05 Score=70.32 Aligned_cols=142 Identities=8% Similarity=-0.037 Sum_probs=103.3
Q ss_pred HHHHHHHHH-hcCCCEEEE-ccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCC-ChHHHHHHH
Q psy4398 115 RALEAAKKV-EHDVAAIDI-NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFH-NEADTIALC 189 (306)
Q Consensus 115 ~~~~aa~~~-~~g~d~vel-n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~-~~~~~~~~a 189 (306)
++++.++.+ ++||..+-+ -+|.+ ..+++.-.++++++|+.+ ++++.+....+| +.+++.+++
T Consensus 160 ~~~~~a~~~~~~G~~~~K~~k~g~~-------------~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~ 226 (394)
T 3mkc_A 160 GYAPLLEKAKAHNIRAVKVCVPIKA-------------DWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLL 226 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTC-------------CCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCccCCC-------------ccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHH
Confidence 455555544 459999999 34421 124667788899999988 568888888889 999999999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-Cch----
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-KLP---- 264 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~~~---- 264 (306)
+.|++.|+++|. ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. ...+.-++ .+.
T Consensus 227 ~~L~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~--~d~v~~k~~~~GGit~ 296 (394)
T 3mkc_A 227 NSIEDLELYFAE-------ATL-QHDDLSGHAKLVENTRSRICGAEMSTTRFEAEEWITKGK--VHLLQSDYNRCGGLTE 296 (394)
T ss_dssp HHTGGGCCSEEE-------SCS-CTTCHHHHHHHHHHCSSCBEECTTCCHHHHHHHHHHTTC--CSEECCCTTTTTHHHH
T ss_pred HHhhhcCCeEEE-------CCC-CchhHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCC--CCeEecCccccCCHHH
Confidence 999999999985 222 345889999999999999999999999999999987532 00111122 111
Q ss_pred HHHHHHHHHhcCCCC
Q psy4398 265 KTILYAHCKYKRFEV 279 (306)
Q Consensus 265 ~~~l~~~~~~~g~~~ 279 (306)
-+.+.+..+++|++.
T Consensus 297 ~~~ia~~A~~~gi~~ 311 (394)
T 3mkc_A 297 LRRITEMATANNVQV 311 (394)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCEE
Confidence 125667778888873
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=98.03 E-value=6.7e-05 Score=69.85 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=98.7
Q ss_pred CceEEEecCCCH-HHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEec
Q psy4398 102 NKIILQIGTADP-ERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~g~~~-~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir 177 (306)
.|+...+...++ +.+.++++.++ .||..+-+.+|+. +++.-.+.++++|+.++ .++.+...
T Consensus 132 v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~~~g~~~~l~vDan 196 (370)
T 1chr_A 132 IPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR---------------SPQDDLIHMEALSNSLGSKAYLRVDVN 196 (370)
T ss_dssp EEBEEEECSSSHHHHHHHHHHHHHTTCCCEEEEECSSS---------------CSHHHHHHHHHHHHHSSTTCCEEEECT
T ss_pred eeEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEecCCC---------------CHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 355455554444 45667777776 5999999987752 24455678899999883 78999988
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+|+.+++.++++.+++.|+++|- ++. .+.+++..+++++.+++||++...+.+.++++++++.
T Consensus 197 ~~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~~iPia~dE~~~~~~~~~~~~~~ 260 (370)
T 1chr_A 197 QAWDEQVASVYIPELEALGVELIE-------QPV-GRENTQALRRLSDNNRVAIMADESLSTLASAFDLARD 260 (370)
T ss_dssp TCCCTTHHHHHTHHHHTTTEEEEE-------CCS-CTTCHHHHHHHHHHSCSEEEESSSCCSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEE-------CCC-CcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHc
Confidence 899999999999999999988874 222 3457889999999999999999999999999998875
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=98.03 E-value=5e-05 Score=70.78 Aligned_cols=146 Identities=10% Similarity=0.104 Sum_probs=103.8
Q ss_pred eEEEecC-CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCC
Q psy4398 104 IILQIGT-ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFH 180 (306)
Q Consensus 104 ~ivql~g-~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~ 180 (306)
+..+++. .+++++.+.++++. +||+.+.++++ | +...+.++++|+.+ ++++.+....+|
T Consensus 139 ~~~~~g~~~~~~~~~~~a~~~~~~G~~~iKik~~-~-----------------~~d~~~v~avr~a~~~~~l~vDan~~~ 200 (375)
T 1r0m_A 139 VGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIK-P-----------------GWDVQPVRATREAFPDIRLTVDANSAY 200 (375)
T ss_dssp BCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB-T-----------------TBSHHHHHHHHHHCTTSCEEEECTTCC
T ss_pred eeEEecCCCCHHHHHHHHHHHHHhcccEEEEecC-h-----------------HHHHHHHHHHHHHcCCCeEEEeCCCCC
Confidence 3334433 48888888877664 59999999863 1 22235577777766 567888877789
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCC
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPV 260 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~ 260 (306)
+.++ .++++.+++.|+++|. ++. .+.+++..+++++.+++||++.+.+.+.++++++++.+. ...+.-+
T Consensus 201 ~~~~-~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~--~d~v~ik 269 (375)
T 1r0m_A 201 TLAD-AGRLRQLDEYDLTYIE-------QPL-AWDDLVDHAELARRIRTPLCLDESVASASDARKALALGA--GGVINLK 269 (375)
T ss_dssp CGGG-HHHHHTTGGGCCSCEE-------CCS-CTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTS--CSEEEEC
T ss_pred CHHH-HHHHHHHHhCCCcEEE-------CCC-CcccHHHHHHHHHhCCCCEEecCccCCHHHHHHHHHhCC--CCEEEEC
Confidence 9999 9999999999999885 233 346789999999999999999999999999999987532 0001112
Q ss_pred C-Cc----hHHHHHHHHHhcCCC
Q psy4398 261 E-KL----PKTILYAHCKYKRFE 278 (306)
Q Consensus 261 p-~~----~~~~l~~~~~~~g~~ 278 (306)
+ .+ .-+.+.++.+++|++
T Consensus 270 ~~~~GGit~~~~i~~~A~~~g~~ 292 (375)
T 1r0m_A 270 VARVGGHAESRRVHDVAQSFGAP 292 (375)
T ss_dssp TTTTTSHHHHHHHHHHHHHTTCC
T ss_pred cchhcCHHHHHHHHHHHHHcCCc
Confidence 2 11 123566667777776
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00015 Score=67.80 Aligned_cols=124 Identities=17% Similarity=0.187 Sum_probs=99.9
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~ 178 (306)
.|+...++..++++..+.++.. ++||..+-+++|. +++.-.+.++++|+.++ .++.+....
T Consensus 132 v~~y~t~g~~~~e~~~~~a~~~~~~Gf~~~KlK~g~----------------~~~~d~~~v~avR~a~g~~~~L~vDaN~ 195 (379)
T 3r0u_A 132 IVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGA----------------DFNRDIQLLKALDNEFSKNIKFRFDANQ 195 (379)
T ss_dssp EEBCEEECCCCHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHCCTTSEEEEECTT
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHcCCCEEeeecCC----------------CHHHHHHHHHHHHHhcCCCCeEEEeCCC
Confidence 4556667777898888777755 4699999998663 35556778899999884 688888888
Q ss_pred CCChHHHHHHHHHHHH--cCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 179 FHNEADTIALCKRLEA--CGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~--~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+|+.+++.++++.+++ .|+.+|- ++ ..+.+++..+++++.+++||.+...+.+..+++++++.
T Consensus 196 ~w~~~~A~~~~~~l~~~~~~l~~iE-------eP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ 260 (379)
T 3r0u_A 196 GWNLAQTKQFIEEINKYSLNVEIIE-------QP-VKYYDIKAMAEITKFSNIPVVADESVFDAKDAERVIDE 260 (379)
T ss_dssp CCCHHHHHHHHHHHHTSCCCEEEEE-------CC-SCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhhcCCCcEEEE-------CC-CCcccHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc
Confidence 8999999999999999 6676663 22 23457899999999999999999999999999998875
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.3e-05 Score=66.14 Aligned_cols=94 Identities=18% Similarity=0.098 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++++.+...|+..+.+++....+...+. .++.++++++..++|+|++||+.++++..+.++.|+ .+|++++.+
T Consensus 131 ~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~-~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGY-DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTTTCCSCC-CHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcCCCeEEEEecCCCCccccc-cHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4778889999999998888886555555554 488999999999999999999999999999988754 999999998
Q ss_pred CCchHHHHHHHHHhcCCCC
Q psy4398 261 EKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 261 p~~~~~~l~~~~~~~g~~~ 279 (306)
|...+ ++.+++++.|+.+
T Consensus 210 ~~~~~-~~~~~l~~~~~~~ 227 (237)
T 3cwo_X 210 EIDVR-ELKEYLKKHGVNV 227 (237)
T ss_dssp SSCHH-HHHHHHHTTTCCC
T ss_pred CCCHH-HHHHHHHHCCCce
Confidence 84433 4456788888643
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.5e-05 Score=67.87 Aligned_cols=148 Identities=9% Similarity=0.110 Sum_probs=93.3
Q ss_pred eEEEecC--CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCcccccc----------CChHHHHHHHHHHHhcccc
Q psy4398 104 IILQIGT--ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALL----------STPDIACNILTTLISNLSI 170 (306)
Q Consensus 104 ~ivql~g--~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~----------~~~~~~~eiv~~v~~~~~~ 170 (306)
++.=+.. .+.+.+.++.+.+.+ |+|.|||.+.-.. ...| |-.+. -+.+.+.++++++|+. .
T Consensus 16 li~yitaG~P~~~~t~~~~~~l~~~GaD~iElGiPfSD--P~aD--GpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~--~ 89 (252)
T 3tha_A 16 NVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSD--PIAD--GEIIADAAKIALDQGVDIHSVFELLARIKTK--K 89 (252)
T ss_dssp EEEEEETTSSCHHHHHHHHHTGGGSSCSEEEEECCCSC--CCSC--CCHHHHHHHHHHHTTCCHHHHHHHHHHCCCS--S
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC--CCCC--cHHHHHHHHHHHHCCCCHHHHHHHHHHHhcC--C
Confidence 4444433 466889998887765 9999999754321 1222 11111 2456777888888765 5
Q ss_pred cEEEEeccCCChH---HHHHHHHHHHHcCCcEEEEccc--------------------------CC----------CCCC
Q psy4398 171 PVSCKIRVFHNEA---DTIALCKRLEACGIIAIGVHGR--------------------------TK----------AERP 211 (306)
Q Consensus 171 pv~vKir~g~~~~---~~~~~a~~l~~~G~d~i~v~~~--------------------------~~----------~~~~ 211 (306)
|+.+-.- +++- ...++++.+.++|+|++.+-+- +. ...+
T Consensus 90 Pivlm~Y--~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gF 167 (252)
T 3tha_A 90 ALVFMVY--YNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGF 167 (252)
T ss_dssp EEEEECC--HHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSC
T ss_pred CEEEEec--cCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCe
Confidence 7665333 2211 1456677777777777765221 10 0011
Q ss_pred ---------CCCC------cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccCC
Q psy4398 212 ---------RHRN------RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYP 259 (306)
Q Consensus 212 ---------~~p~------~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~ 259 (306)
.|.. ..++++++++.+++||+..+||.++++++++.+. ++.+|+++++
T Consensus 168 iY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~~ADGVIVGSAiVk 232 (252)
T 3tha_A 168 IYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVADGVIVGTSIVK 232 (252)
T ss_dssp EEEECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTTTSSEEEECHHHHH
T ss_pred EEEEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHhcCCEEEECHHHHH
Confidence 1211 1457899999999999999999999999988763 7799999863
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00013 Score=68.35 Aligned_cols=128 Identities=11% Similarity=0.108 Sum_probs=103.3
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEe
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKI 176 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 176 (306)
...|+...+...+++++.+.++.+. +||..+-+++|++.. ..+++.-.+.++++|+.+ ++++.+..
T Consensus 133 ~~v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~-----------~~~~~~d~~~v~avR~a~G~~~~L~vDa 201 (386)
T 3fv9_G 133 GPVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEA-----------EGGPALDAERITACLADRQPGEWYLADA 201 (386)
T ss_dssp SCBCEEEEECSCCHHHHHHHHHHHHHTTCCEEEEECCCCTT-----------TTHHHHHHHHHHHHTTTCCTTCEEEEEC
T ss_pred CceeeeEecCCCCHHHHHHHHHHHHHCCCCEEEEeccCCCC-----------CCCHHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 3567888888889999988887664 699999999998631 123566678899999988 46788888
Q ss_pred ccCCChHHHHHHHHHH-HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 177 RVFHNEADTIALCKRL-EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l-~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
..+|+.+++.++++.+ ++.++ +|- ++. + +++..+++++.+++||.+...+.+..+++++++.
T Consensus 202 N~~~~~~~A~~~~~~l~~~~~i-~iE-------eP~--~-~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~ 264 (386)
T 3fv9_G 202 NNGLTVEHALRMLSLLPPGLDI-VLE-------APC--A-SWAETKSLRARCALPLLLDELIQTETDLIAAIRD 264 (386)
T ss_dssp TTCCCHHHHHHHHHHSCSSCCC-EEE-------CCC--S-SHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhhccCCc-EEe-------cCC--C-CHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHh
Confidence 8889999999999999 76776 552 222 2 7888999999999999999999999999999875
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.96 E-value=7.3e-06 Score=72.09 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+.+.|+|.+++-+-+... ...+.++++++++.+.+.+|+...|||+|.++++.+++.|+ .+|++.+.
T Consensus 31 ~dP~~~a~~~~~~gad~lhvvDld~a~-~~~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~ 109 (243)
T 4gj1_A 31 YNPLKKFKEYEKAGAKELHLVDLTGAK-DPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIK 109 (243)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEHHHHH-CGGGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTT
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCccc-ccchhHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEcccccc
Confidence 357899999999999999986533211 11245889999999999999999999999999999999986 99999999
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
||.+.+.
T Consensus 110 ~p~li~e 116 (243)
T 4gj1_A 110 DATLCLE 116 (243)
T ss_dssp CHHHHHH
T ss_pred CCchHHH
Confidence 9965433
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=97.94 E-value=7.9e-05 Score=64.61 Aligned_cols=136 Identities=10% Similarity=0.122 Sum_probs=91.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
.++.+-+..+++++|.+.+.. .|+|+|.+|...+. ..+.+.++.+++. ++.+.+-+. ++
T Consensus 65 ~~~~v~lmv~d~~~~i~~~~~--agad~v~vH~~~~~----------------~~~~~~~~~i~~~-g~~igv~~~--p~ 123 (228)
T 1h1y_A 65 AYLDCHLMVTNPSDYVEPLAK--AGASGFTFHIEVSR----------------DNWQELIQSIKAK-GMRPGVSLR--PG 123 (228)
T ss_dssp SEEEEEEESSCGGGGHHHHHH--HTCSEEEEEGGGCT----------------TTHHHHHHHHHHT-TCEEEEEEC--TT
T ss_pred CcEEEEEEecCHHHHHHHHHH--cCCCEEEECCCCcc----------------cHHHHHHHHHHHc-CCCEEEEEe--CC
Confidence 478888888888777554432 59999999854311 1124556666654 666665554 22
Q ss_pred hHHHHHHHHHHHHc--CCcEEEEcccCCC---CCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hh
Q psy4398 182 EADTIALCKRLEAC--GIIAIGVHGRTKA---ERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CA 252 (306)
Q Consensus 182 ~~~~~~~a~~l~~~--G~d~i~v~~~~~~---~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~ 252 (306)
+..+..+.+.+. ++|+|.+...... +.+ .+..++.++++++.. ++||++.|||+. +++.++++.+ +.
T Consensus 124 --t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~-~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni~~~~~aGaD~vv 199 (228)
T 1h1y_A 124 --TPVEEVFPLVEAENPVELVLVMTVEPGFGGQKF-MPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAASAGANCIV 199 (228)
T ss_dssp --SCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCC-CGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHHHTCCEEE
T ss_pred --CCHHHHHHHHhcCCCCCEEEEEeecCCCCcccC-CHHHHHHHHHHHHhcCCCCEEEECCcCH-HHHHHHHHcCCCEEE
Confidence 112334455555 8999988544321 222 234577888999988 899999999986 8888888865 49
Q ss_pred hccccCCCCC
Q psy4398 253 FLRNHYPVEK 262 (306)
Q Consensus 253 vGrall~~p~ 262 (306)
+||+++..+.
T Consensus 200 vGsai~~~~d 209 (228)
T 1h1y_A 200 AGSSIFGAAE 209 (228)
T ss_dssp ESHHHHTSSC
T ss_pred ECHHHHCCCC
Confidence 9999997554
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=5.3e-06 Score=72.50 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++++.++++|+|.|+++..+... ...+.. +.++++++.+++|++.+|||.|+++++.+++.++ .+|++++.+
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~-~~~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~~ 109 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAF-GRGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALEN 109 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHT-TSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccc-cCCChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhhC
Confidence 67899999999999999997643211 112334 8999999999999999999999999999998754 889988887
Q ss_pred CCc
Q psy4398 261 EKL 263 (306)
Q Consensus 261 p~~ 263 (306)
|.+
T Consensus 110 p~~ 112 (244)
T 2y88_A 110 PQW 112 (244)
T ss_dssp HHH
T ss_pred hHH
Confidence 743
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.3e-05 Score=72.56 Aligned_cols=149 Identities=7% Similarity=-0.090 Sum_probs=107.3
Q ss_pred HHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHHHH
Q psy4398 114 ERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 114 ~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~ 190 (306)
+++.+.++++. +||+.+.++++...... + + .++++...++++++|+.+ ++++.+....+|+.+++.++++
T Consensus 150 e~~~~~a~~~~~~Gf~~vKik~g~~~~~~--~----~-~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~ 222 (392)
T 3p3b_A 150 ALMQEEAMQGYAKGQRHFKIKVGRGGRHM--P----L-WEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLA 222 (392)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCHHHHTS--C----H-HHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEECcCcCcccC--C----c-cccHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHH
Confidence 88888887665 59999999876321100 0 1 125677788999999887 4778887777899999999999
Q ss_pred HHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-C--
Q psy4398 191 RLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH-----LKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-K-- 262 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~-----~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~-- 262 (306)
.+++.|++++- ++.. .+++..+++++. +++||++.+ +.+.++++++++.+. ...+.-++ .
T Consensus 223 ~l~~~~i~~iE-------~P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~--~d~v~ik~~~~G 290 (392)
T 3p3b_A 223 ALSDVNLYWLE-------EAFH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGR--VDVLQYDIIWPG 290 (392)
T ss_dssp HTTTSCEEEEE-------CSSS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTS--CCEECCBTTTBC
T ss_pred HHHhcCCCEEe-------cCCc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCC--CCEEEeCccccC
Confidence 99999988764 2222 578899999998 899999999 999999999997632 00111122 1
Q ss_pred chH-HHHHHHHHhcCCCCCc
Q psy4398 263 LPK-TILYAHCKYKRFEVPK 281 (306)
Q Consensus 263 ~~~-~~l~~~~~~~g~~~~~ 281 (306)
+.+ +.+.++.+++|++...
T Consensus 291 it~~~~i~~~A~~~gi~~~~ 310 (392)
T 3p3b_A 291 FTHWMELGEKLDAHGLRSAP 310 (392)
T ss_dssp HHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHHHcCCEEEe
Confidence 222 3677788888887333
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.2e-05 Score=69.53 Aligned_cols=117 Identities=14% Similarity=0.180 Sum_probs=91.8
Q ss_pred EEecC-CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCCh
Q psy4398 106 LQIGT-ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNE 182 (306)
Q Consensus 106 vql~g-~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~ 182 (306)
.+++. .+++++.+.++++. +||+.+.++++ | +...+.++++|+.+ ++++.+....+|+.
T Consensus 134 ~~~g~~~~~~~~~~~a~~~~~~G~~~iKik~~-~-----------------~~d~~~v~avr~a~~~~~l~vDan~~~~~ 195 (369)
T 2zc8_A 134 VSLGIQPSVEDTLRVVERHLEEGYRRIKLKIK-P-----------------GWDYEVLKAVREAFPEATLTADANSAYSL 195 (369)
T ss_dssp EEECCCSSHHHHHHHHHHHHHTTCSCEEEECB-T-----------------TBSHHHHHHHHHHCTTSCEEEECTTCCCG
T ss_pred EEecCCCCHHHHHHHHHHHHHhhhheeeeecC-h-----------------hHHHHHHHHHHHHcCCCeEEEecCCCCCH
Confidence 34433 47888888877664 69999999863 1 22235577777766 56788877778999
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
++ .++++.+++.|+++|. ++. .+.+++..+++++.+++||++...+.+.++++++++.
T Consensus 196 ~~-~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~ 253 (369)
T 2zc8_A 196 AN-LAQLKRLDELRLDYIE-------QPL-AYDDLLDHAKLQRELSTPICLDESLTGAEKARKAIEL 253 (369)
T ss_dssp GG-HHHHHGGGGGCCSCEE-------CCS-CTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHH
T ss_pred HH-HHHHHHHHhCCCcEEE-------CCC-CcccHHHHHHHHhhCCCCEEEcCccCCHHHHHHHHHh
Confidence 99 9999999999999886 222 2457889999999999999999999999999999875
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00039 Score=61.89 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=100.4
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
+.|++.+=+-.++.+.. +....|+|+|=|...+ + +.+.+.++++..++ .+..+.|-+.
T Consensus 120 ~lPVl~Kdfi~d~~qi~---ea~~~GAD~VlLi~a~--------------L-~~~~l~~l~~~a~~-lGl~~lvevh--- 177 (272)
T 3tsm_A 120 SLPALRKDFLFDPYQVY---EARSWGADCILIIMAS--------------V-DDDLAKELEDTAFA-LGMDALIEVH--- 177 (272)
T ss_dssp SSCEEEESCCCSTHHHH---HHHHTTCSEEEEETTT--------------S-CHHHHHHHHHHHHH-TTCEEEEEEC---
T ss_pred CCCEEECCccCCHHHHH---HHHHcCCCEEEEcccc--------------c-CHHHHHHHHHHHHH-cCCeEEEEeC---
Confidence 46776654445554433 2234599999997543 1 34567778777766 4777777777
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhcc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLR 255 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGr 255 (306)
+. +-++.+.+.|++.|-++.|..... ..+++...++.+.+ ++|+|+-|||.+++|+..+.+.| +.||+
T Consensus 178 ~~----eEl~~A~~~ga~iIGinnr~l~t~---~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~ 250 (272)
T 3tsm_A 178 DE----AEMERALKLSSRLLGVNNRNLRSF---EVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGE 250 (272)
T ss_dssp SH----HHHHHHTTSCCSEEEEECBCTTTC---CBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECH
T ss_pred CH----HHHHHHHhcCCCEEEECCCCCccC---CCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcH
Confidence 22 334556679999999988764332 24678888888888 69999999999999999999875 49999
Q ss_pred ccCCCCCchHHHHHHHHH
Q psy4398 256 NHYPVEKLPKTILYAHCK 273 (306)
Q Consensus 256 all~~p~~~~~~l~~~~~ 273 (306)
++++.+. +...+++++.
T Consensus 251 almr~~d-~~~~~~~l~~ 267 (272)
T 3tsm_A 251 SLMRQHD-VAAATRALLT 267 (272)
T ss_dssp HHHTSSC-HHHHHHHHHH
T ss_pred HHcCCcC-HHHHHHHHHh
Confidence 9997543 3345555554
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.87 E-value=6.1e-06 Score=72.24 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++++.++++|+|.|+++..+... ...+.+ +.++++++.+++|++.+|||.|+++++.+++.++ .+|+.++.+
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~-~~~~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~~ 110 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAF-GTGDNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET 110 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHH-TSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhh-cCCChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhhC
Confidence 67889999999999999997643211 112345 8899999999999999999999999999998754 889988887
Q ss_pred CCc
Q psy4398 261 EKL 263 (306)
Q Consensus 261 p~~ 263 (306)
|.+
T Consensus 111 p~~ 113 (244)
T 1vzw_A 111 PEW 113 (244)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=97.87 E-value=4.6e-05 Score=66.25 Aligned_cols=139 Identities=11% Similarity=0.061 Sum_probs=95.5
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-CCCEEEEcc----CCCccccccCCccccccCChHHHHHHHHHHHhc--ccccEEEE
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-DVAAIDINM----GCPKQFSLTGGMGAALLSTPDIACNILTTLISN--LSIPVSCK 175 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~----gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~--~~~pv~vK 175 (306)
.+..+|...|...+.+..+.+++ |+|.+-+-. -.|+- .+| .++++++|+. .+.|+.+.
T Consensus 6 ~i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~-----~~G----------~~~v~~ir~~~~~~~~~dvh 70 (228)
T 3ovp_A 6 KIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNI-----TFG----------HPVVESLRKQLGQDPFFDMH 70 (228)
T ss_dssp EEEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCB-----CBC----------HHHHHHHHHHHCSSSCEEEE
T ss_pred EeeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCccc-----ccC----------HHHHHHHHHhhCCCCcEEEE
Confidence 46677888888888888888865 888655522 23542 133 3467777777 47889988
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCC
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AER 210 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~ 210 (306)
+-. .+++ ++++.+.++|+|.|++|.-.. ..+
T Consensus 71 Lmv-~~p~---~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pG 146 (228)
T 3ovp_A 71 MMV-SKPE---QWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPG 146 (228)
T ss_dssp EEC-SCGG---GGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTT
T ss_pred EEe-CCHH---HHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCC
Confidence 774 2333 455677789999999875210 001
Q ss_pred CC----CCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 211 PR----HRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 211 ~~----~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
+. .|..++-++++++.. +++|..-|||+ .+++.+++++|+ .+||+++..+
T Consensus 147 f~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a~ 204 (228)
T 3ovp_A 147 FGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRSE 204 (228)
T ss_dssp TCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTCS
T ss_pred CCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCCC
Confidence 11 123567788888877 68999999996 899999998875 8999998644
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00035 Score=66.12 Aligned_cols=167 Identities=5% Similarity=0.057 Sum_probs=117.0
Q ss_pred CCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccc-----cCCccccccC---ChHHHHHHHHHHHhcc--c
Q psy4398 101 KNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSL-----TGGMGAALLS---TPDIACNILTTLISNL--S 169 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~-----~~~~G~~l~~---~~~~~~eiv~~v~~~~--~ 169 (306)
..|+...+.+.+++++.+.++.+. +||..+-+.++.+..+.. .....+.... +++...+.++++|+++ +
T Consensus 142 ~v~~y~~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~~ 221 (421)
T 4hnl_A 142 AIPAYTHAVADNLDDLYHEIDRFLAAGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGNQ 221 (421)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccceecccCCCCHHHHHHHHHHHHHhhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCCC
Confidence 457777777889999888777664 699999999886432211 1111122222 3455677888889888 4
Q ss_pred ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 170 IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 170 ~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+.+.+-...+|+.+++.++++.+++.++..+- ++ ..+.+++..+++++.+++||.+.-.+.+..+++++++.
T Consensus 222 ~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~ 293 (421)
T 4hnl_A 222 FQMLHDVHERLHPNQAIQFAKAAEPYQLFFLE-------DI-LPPDQSHWLTQLRSQSATPIATGELFNNPMEWQELVKN 293 (421)
T ss_dssp SEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------CC-SCGGGGGGHHHHHTTCCCCEEECTTCCSGGGTHHHHHT
T ss_pred ceEeccccccCCHHHHHHHHHHhhhhhhcccc-------cC-CcccchHHHHHHHhcCCCCeecCcceehhHHHHHHHhc
Confidence 56667766689999999999999999998873 22 23457888999999999999998899999999999886
Q ss_pred hhhhccccCCCCCch-------HHHHHHHHHhcCCCC
Q psy4398 250 NCAFLRNHYPVEKLP-------KTILYAHCKYKRFEV 279 (306)
Q Consensus 250 ~v~vGrall~~p~~~-------~~~l~~~~~~~g~~~ 279 (306)
+. .-+-+|... -+.+.+..+++|++.
T Consensus 294 ~a----~d~v~~d~~~~GGite~~~ia~~A~~~gi~v 326 (421)
T 4hnl_A 294 RQ----IDFMRAHVSQIGGITPALKLAHFCDAMGVRI 326 (421)
T ss_dssp TC----CSEECCCGGGGTSHHHHHHHHHHHHHTTCEE
T ss_pred CC----ceEEEeCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 32 111122111 125667777888773
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=4.7e-05 Score=67.71 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
+....+...++.|...+-+.... .+.+.++++++++.+ ++||+..|||+|.++++++++.|+ .+|++++
T Consensus 187 ~~~aYa~~gad~G~~lV~LD~~~------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav 260 (286)
T 3vk5_A 187 EIDRYLHVARAFGFHMVYLYSRN------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALE 260 (286)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSS------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGS
T ss_pred HHHHHHHHHHHcCCCEEEEcCCC------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 34677888888999998887432 356889999999999 899999999999999999998754 9999999
Q ss_pred CCC
Q psy4398 259 PVE 261 (306)
Q Consensus 259 ~~p 261 (306)
.|+
T Consensus 261 ~d~ 263 (286)
T 3vk5_A 261 QPD 263 (286)
T ss_dssp STT
T ss_pred cCC
Confidence 993
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00037 Score=65.13 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=96.8
Q ss_pred CceEEEecCCCHHH-HHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEec
Q psy4398 102 NKIILQIGTADPER-ALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~g~~~~~-~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir 177 (306)
.|+...+...++++ ..++++.++ .||..+-+.+|.. +++.-.+.++++|+.++ .++.+...
T Consensus 138 v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDaN 202 (382)
T 3dgb_A 138 LPVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGAG---------------EVDRDLAHVIAIKKALGDSASVRVDVN 202 (382)
T ss_dssp EEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECCSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECT
T ss_pred eeEEEEecCCChHHHHHHHHHHHHhCCCCEEEEeeCCC---------------CHHHHHHHHHHHHHHcCCCCeEEEeCC
Confidence 34445555556655 555666666 4999999987642 24445677888888874 67888888
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+|+.+++.++++.+++.|+.+|- ++ ..+.+++..+++++.+++||++...+.+..+++++++.
T Consensus 203 ~~~~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~ 266 (382)
T 3dgb_A 203 QAWDEAVALRACRILGGNGIDLIE-------QP-ISRNNRAGMVRLNASSPAPIMADESIECVEDAFNLARE 266 (382)
T ss_dssp TCBCHHHHHHHHHHHHTTTCCCEE-------CC-BCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcCcCeee-------CC-CCccCHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHc
Confidence 889999999999999999988873 22 23458999999999999999999999999999998875
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00044 Score=59.87 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc---CCChHHHHHHHHH
Q psy4398 115 RALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV---FHNEADTIALCKR 191 (306)
Q Consensus 115 ~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~---g~~~~~~~~~a~~ 191 (306)
...++.. ++.|+|.|++.+. +|.....+.+.+.+-++++++.++- ..+|+=+ -.+.++....++.
T Consensus 69 k~~E~~~-i~~GAdEID~Vin----------ig~~~~g~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~Lt~eei~~a~~i 136 (226)
T 1vcv_A 69 RIALVSR-LAEVADEIDVVAP----------IGLVKSRRWAEVRRDLISVVGAAGG-RVVKVITEEPYLRDEERYTLYDI 136 (226)
T ss_dssp HHHHHHH-HTTTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCCEEEEecc----------hhhhcCCCHHHHHHHHHHHHHHHcC-CCceEEEeccCCCHHHHHHHHHH
Confidence 4456666 7789999998633 3433445677888888888887742 2445222 2456778899999
Q ss_pred HHHcCCcEEEEcccCC------CCCCCCCCcHHHHHHHHhh---CC--CcEEEecCCCCHHHHHHHHHh
Q psy4398 192 LEACGIIAIGVHGRTK------AERPRHRNRIEMIRTLTQH---LK--IPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~------~~~~~~p~~~~~v~~i~~~---~~--ipvia~GGI~s~~~~~~~l~~ 249 (306)
..++|+|+|-.+-... .....+.+.++.++.+++. ++ ++|-++|||++.+++.++++.
T Consensus 137 a~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a 205 (226)
T 1vcv_A 137 IAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDA 205 (226)
T ss_dssp HHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHH
T ss_pred HHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHH
Confidence 9999999997542211 0000233455666555555 64 999999999999999998887
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00011 Score=63.20 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=54.1
Q ss_pred HHHHHHcCCcEEEEcccC---CCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHh---hhhhccccCCCC
Q psy4398 189 CKRLEACGIIAIGVHGRT---KAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~---~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p 261 (306)
++.+.+.|+|++.+.... ....+..+..|+.++++++.++ +||++.|||+ ++++.++++. ++.+|++++..+
T Consensus 129 ~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~~ 207 (227)
T 2tps_A 129 VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVSMISAISQAE 207 (227)
T ss_dssp HHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEEESHHHHTSS
T ss_pred HHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEEEhHHhhcCC
Confidence 455667899999973211 1111123457899999999887 9999999999 8999888876 459999998654
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00038 Score=59.02 Aligned_cols=145 Identities=12% Similarity=0.151 Sum_probs=84.1
Q ss_pred CCceEEEecCCC-HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC
Q psy4398 101 KNKIILQIGTAD-PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF 179 (306)
Q Consensus 101 ~~p~ivql~g~~-~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 179 (306)
+.|+++-+...+ ++.+.+.+ ++.|+|+|-+|.... .+.+.++++.+++. +.++.+-+. .
T Consensus 53 ~~~i~~~l~~~di~~~~~~~a--~~~Gad~v~vh~~~~----------------~~~~~~~~~~~~~~-g~~~gv~~~-s 112 (207)
T 3ajx_A 53 DKIVFADMKTMDAGELEADIA--FKAGADLVTVLGSAD----------------DSTIAGAVKAAQAH-NKGVVVDLI-G 112 (207)
T ss_dssp TSEEEEEEEECSCHHHHHHHH--HHTTCSEEEEETTSC----------------HHHHHHHHHHHHHH-TCEEEEECT-T
T ss_pred CCeEEEEEEecCccHHHHHHH--HhCCCCEEEEeccCC----------------hHHHHHHHHHHHHc-CCceEEEEe-c
Confidence 457887766567 76655322 235999999985531 12344555555542 444433232 1
Q ss_pred C-ChHHHHHHHHHHHHcCCcEEEEc-ccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhc
Q psy4398 180 H-NEADTIALCKRLEACGIIAIGVH-GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFL 254 (306)
Q Consensus 180 ~-~~~~~~~~a~~l~~~G~d~i~v~-~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vG 254 (306)
+ +++ +.++.+++.|+|++.++ +.+.......+.. +.++++++. ++|+++.|||+ ++++.++++.| +.+|
T Consensus 113 ~~~p~---~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~-~~i~~~~~~-~~pi~v~GGI~-~~~~~~~~~aGad~vvvG 186 (207)
T 3ajx_A 113 IEDKA---TRAQEVRALGAKFVEMHAGLDEQAKPGFDLN-GLLAAGEKA-RVPFSVAGGVK-VATIPAVQKAGAEVAVAG 186 (207)
T ss_dssp CSSHH---HHHHHHHHTTCSEEEEECCHHHHTSTTCCTH-HHHHHHHHH-TSCEEEESSCC-GGGHHHHHHTTCSEEEES
T ss_pred CCChH---HHHHHHHHhCCCEEEEEecccccccCCCchH-HHHHHhhCC-CCCEEEECCcC-HHHHHHHHHcCCCEEEEe
Confidence 2 223 23455566799999443 3321100011223 555555544 78999999998 78888888875 4999
Q ss_pred cccCCCCCchHHHHHHHH
Q psy4398 255 RNHYPVEKLPKTILYAHC 272 (306)
Q Consensus 255 rall~~p~~~~~~l~~~~ 272 (306)
|+++..+. +....+++.
T Consensus 187 saI~~~~d-p~~~~~~~~ 203 (207)
T 3ajx_A 187 GAIYGAAD-PAAAAKELR 203 (207)
T ss_dssp HHHHTSSS-HHHHHHHHH
T ss_pred eeccCCCC-HHHHHHHHH
Confidence 99987443 333444443
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.79 E-value=4.6e-05 Score=66.96 Aligned_cols=139 Identities=15% Similarity=0.134 Sum_probs=97.4
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-CCCEEEEcc----CCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEe
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-DVAAIDINM----GCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKI 176 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~----gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 176 (306)
.+..+|...|...+.+..+.+++ |+|.+-+-. -.|+- .+| .++++++|+.. +.|+.+.+
T Consensus 29 ~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpni-----t~G----------~~~v~~lr~~~p~~~ldvHL 93 (246)
T 3inp_A 29 QINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNL-----TFG----------PMVLKALRDYGITAGMDVHL 93 (246)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB-----CCC----------HHHHHHHHHHTCCSCEEEEE
T ss_pred eeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcch-----hcC----------HHHHHHHHHhCCCCeEEEEE
Confidence 57778888888888888888875 888655532 24542 233 35788888887 88999988
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccC--------------------------C-------------------CCCC
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRT--------------------------K-------------------AERP 211 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~--------------------------~-------------------~~~~ 211 (306)
-.. ++ .++++.+.++|+|.+++|.-. . ..++
T Consensus 94 mv~-~p---~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGf 169 (246)
T 3inp_A 94 MVK-PV---DALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGF 169 (246)
T ss_dssp ECS-SC---HHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC
T ss_pred eeC-CH---HHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCC
Confidence 741 22 346677888999999987521 0 0011
Q ss_pred C----CCCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 212 R----HRNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 212 ~----~p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
. .|..++-++++++.. +++|..-|||+ .+++.+++++|+ .+||+++..+
T Consensus 170 gGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a~ 230 (246)
T 3inp_A 170 GGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNSD 230 (246)
T ss_dssp --CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTSS
T ss_pred CCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCCC
Confidence 1 134567777777653 58899999998 788999998876 8999998755
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=5.7e-05 Score=66.11 Aligned_cols=131 Identities=12% Similarity=0.054 Sum_probs=86.9
Q ss_pred HHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------CC------C--hH
Q psy4398 119 AAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------FH------N--EA 183 (306)
Q Consensus 119 aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------g~------~--~~ 183 (306)
+++.+. .|+|.|||-.+ ..-+.+.+.++++++|+ .++|+.+-... |. + .+
T Consensus 25 ~~~~l~~~GaD~ielG~S--------------~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i~~G~dg~iiPdLp~e 89 (240)
T 1viz_A 25 QLEILCESGTDAVIIGGS--------------DGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAIVPGFDLYFIPSVLNS 89 (240)
T ss_dssp HHHHHHTSCCSEEEECC------------------CHHHHHHHHHHHTT-SSSCEEEECSCGGGCCSCCSEEEEEEETTB
T ss_pred HHHHHHHcCCCEEEECCC--------------CCCCHHHHHHHHHHhhC-cCCCEEEecCccccccCCCCEEEEcccCcc
Confidence 345444 59999999642 23467788999999998 78898863221 21 1 11
Q ss_pred HHHHH-----HHHHHHcC-----CcEEE----Ec-ccCC---------------------------------CCCCCCCC
Q psy4398 184 DTIAL-----CKRLEACG-----IIAIG----VH-GRTK---------------------------------AERPRHRN 215 (306)
Q Consensus 184 ~~~~~-----a~~l~~~G-----~d~i~----v~-~~~~---------------------------------~~~~~~p~ 215 (306)
+..++ .+.+.+.| .+.+- +- ..+. .. ...+.
T Consensus 90 e~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~VYl~s-~G~~~ 168 (240)
T 1viz_A 90 KNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEY-SGVLG 168 (240)
T ss_dssp SSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEEC-TTSCC
T ss_pred cChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCEEEEeC-CCccC
Confidence 12233 45567777 66664 31 1000 00 01144
Q ss_pred cHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh--hhhhccccCCCCC-chH
Q psy4398 216 RIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYPVEK-LPK 265 (306)
Q Consensus 216 ~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~~p~-~~~ 265 (306)
+.++++++++.+ ++|++..|||+|+++++++++- ++.+|+++..+|. +.+
T Consensus 169 ~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~gAd~VIVGSa~v~~~~~~~~ 222 (240)
T 1viz_A 169 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALK 222 (240)
T ss_dssp CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHTTCSEEEECTHHHHCHHHHHT
T ss_pred hHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCCEEEEChHHHhCHHHHHH
Confidence 789999999999 9999999999999999999881 3599999999874 443
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=63.75 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=42.2
Q ss_pred CCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh--hhhhccccCCCC
Q psy4398 214 RNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYPVE 261 (306)
Q Consensus 214 p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~~p 261 (306)
+.+.++++++++.+ ++|++..|||+|+++++++++- ++.+|++++.+|
T Consensus 175 ~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~gAd~VIVGSa~v~~~ 225 (234)
T 2f6u_A 175 YGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLRYADTIIVGNVIYEKG 225 (234)
T ss_dssp CCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHHHSSEEEECHHHHHHC
T ss_pred cchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhCCCEEEEChHHHhCH
Confidence 34789999999999 9999999999999999999881 359999998765
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00019 Score=67.50 Aligned_cols=121 Identities=12% Similarity=0.091 Sum_probs=95.2
Q ss_pred CceEEEec-CCC--HHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEE
Q psy4398 102 NKIILQIG-TAD--PERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCK 175 (306)
Q Consensus 102 ~p~ivql~-g~~--~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vK 175 (306)
.|+-.+++ ..+ ++++++.++.+. +||..+.++++ |. .+ .+.++++|+.+ ++++.+.
T Consensus 150 v~~~~s~g~~~~~~~e~~~~~a~~~~~~G~~~iKlKv~-~~-------------~d----~~~v~avR~a~G~~~~L~vD 211 (400)
T 3mwc_A 150 IESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIKIK-PG-------------WD----VEPLQETRRAVGDHFPLWTD 211 (400)
T ss_dssp EEBCEEECCCTTCCHHHHHHHHHHHHHHTCSCEEEECB-TT-------------BS----HHHHHHHHHHHCTTSCEEEE
T ss_pred EEeeEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEEeC-cc-------------hH----HHHHHHHHHhcCCCCEEEEe
Confidence 45556664 335 888888777654 59999999873 11 22 45677888877 5788888
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
...+|+.++ .++++.+++.|+++|- ++ ..+.+++..+++++.+++||++...+.+..+++++++.
T Consensus 212 aN~~w~~~~-~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~ 276 (400)
T 3mwc_A 212 ANSSFELDQ-WETFKAMDAAKCLFHE-------QP-LHYEALLDLKELGERIETPICLDESLISSRVAEFVAKL 276 (400)
T ss_dssp CTTCCCGGG-HHHHHHHGGGCCSCEE-------SC-SCTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHT
T ss_pred CCCCCCHHH-HHHHHHHHhcCCCEEe-------CC-CChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhc
Confidence 888899999 9999999999998884 22 23457899999999999999999999999999999875
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00044 Score=60.18 Aligned_cols=118 Identities=13% Similarity=0.110 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEeccC-CChHHHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKIRVF-HNEADTIALCKR 191 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~g-~~~~~~~~~a~~ 191 (306)
..++...++.|+|.|++.+. +|.... .+.+-+.++++.+ +.|+-|=+-.+ .+.++....++.
T Consensus 91 ~~e~~~Av~~GAdEID~vin----------ig~~~~----~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~e~i~~a~ri 156 (234)
T 1n7k_A 91 LVEAQTVLEAGATELDVVPH----------LSLGPE----AVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDS 156 (234)
T ss_dssp HHHHHHHHHHTCCEEEECCC----------GGGCHH----HHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecc----------chHHHH----HHHHHHHHHHHHHhhcCCeEEEEEeccCCCHHHHHHHHHH
Confidence 34444445569999998643 232222 4444445555554 34542222222 356778899999
Q ss_pred HHHcCCcEEEEcccCCCCCCC-CCCcHHHHHH--HHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 192 LEACGIIAIGVHGRTKAERPR-HRNRIEMIRT--LTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~~~~~~-~p~~~~~v~~--i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
..++|+|+|-.+-. ... +.+..+.++. +++.+++||-++|||++.+++.++++.|.
T Consensus 157 a~eaGADfVKTsTG----~~~~~gAt~~dv~l~~m~~~v~v~VKaaGGirt~~~al~~i~aGa 215 (234)
T 1n7k_A 157 SRRAGADIVKTSTG----VYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGA 215 (234)
T ss_dssp HHHTTCSEEESCCS----SSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTTC
T ss_pred HHHhCCCEEEeCCC----CCCCCCCCHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHHcCc
Confidence 99999999975321 111 2345566666 77777799999999999999999998755
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00032 Score=65.84 Aligned_cols=148 Identities=9% Similarity=0.112 Sum_probs=108.7
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc---ccEEEEec
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS---IPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~---~pv~vKir 177 (306)
.|+-..+...+++++.+.++.+ ++||..+-+++|++ +++.-.+.++++|+.++ +++.+...
T Consensus 154 v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~KlKvg~~---------------~~~~d~~~v~avR~a~gg~~~~L~vDaN 218 (391)
T 4e8g_A 154 VPSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGR---------------PVEIDIETVRKVWERIRGTGTRLAVDGN 218 (391)
T ss_dssp EECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSS---------------CHHHHHHHHHHHHHHHTTTTCEEEEECT
T ss_pred EEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEcCCCC---------------CHHHHHHHHHHHHHHhCCCCCeEEEeCC
Confidence 4566677778899988877765 46999999998763 24445667888877763 56788887
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhcccc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNH 257 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGral 257 (306)
.+|+.+++.++++.+++.++ +|- ++ ..+++..+++++.+++||.+.-.+.+..+++++++.+. .-
T Consensus 219 ~~w~~~~A~~~~~~L~~~~i-~iE-------eP---~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~a----~d 283 (391)
T 4e8g_A 219 RSLPSRDALRLSRECPEIPF-VLE-------QP---CNTLEEIAAIRGRVQHGIYLDESGEDLSTVIRAAGQGL----CD 283 (391)
T ss_dssp TCCCHHHHHHHHHHCTTSCE-EEE-------SC---SSSHHHHHHHGGGCCSCEEESTTCCSHHHHHHHHHTTC----CS
T ss_pred CCCCHHHHHHHHHHHhhcCe-EEe-------cC---CccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCC----CC
Confidence 78999999999999999887 652 22 24789999999999999999999999999999987532 00
Q ss_pred CCCCCc-------hHHHHHHHHHhcCCCC
Q psy4398 258 YPVEKL-------PKTILYAHCKYKRFEV 279 (306)
Q Consensus 258 l~~p~~-------~~~~l~~~~~~~g~~~ 279 (306)
+-+|.. .-+.+.+..+++|++.
T Consensus 284 ~v~ik~~~~GGit~~~~ia~~A~~~gi~~ 312 (391)
T 4e8g_A 284 GFGMKLTRIGGLQQMAAFRDICEARALPH 312 (391)
T ss_dssp EEEEEHHHHTSHHHHHHHHHHHHHTTCCE
T ss_pred EEEeCccccCCHHHHHHHHHHHHHcCCeE
Confidence 111111 1125666777788773
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0003 Score=62.14 Aligned_cols=127 Identities=10% Similarity=0.085 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc-cEEEEecc--C-CChHH-HHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI-PVSCKIRV--F-HNEAD-TIALCK 190 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~-pv~vKir~--g-~~~~~-~~~~a~ 190 (306)
..++...++.|+|.|++.+. +|.....+.+.+.+-++++++.++. +..+|+=+ + .+.++ ....++
T Consensus 88 v~E~~~Av~~GAdEIDmVin----------ig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ 157 (260)
T 1p1x_A 88 LAETRAAIAYGADEVDVVFP----------YRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASE 157 (260)
T ss_dssp HHHHHHHHHHTCSEEEEECC----------HHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecc----------HHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHH
Confidence 34444445679999998543 3333345667777777888877642 34555443 1 23344 678999
Q ss_pred HHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh-----C--CCcEEEecCCCCHHHHHHHHHhhh-hhccc
Q psy4398 191 RLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH-----L--KIPVIANGGSKEIVDYGGVFSLNC-AFLRN 256 (306)
Q Consensus 191 ~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~-----~--~ipvia~GGI~s~~~~~~~l~~~v-~vGra 256 (306)
...++|+|+|-.+- +...+.+..+.++.+++. + +++|-++|||++.+++.++++.+. .+|..
T Consensus 158 ia~eaGADfVKTST----Gf~~~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~aga~~lG~~ 227 (260)
T 1p1x_A 158 ISIKAGADFIKTST----GKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGAD 227 (260)
T ss_dssp HHHHTTCSEEECCC----SCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhCCCEEEeCC----CCCCCCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhhhhhcccc
Confidence 99999999997542 122234566755555555 3 689999999999999999999876 45554
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00097 Score=62.23 Aligned_cols=125 Identities=13% Similarity=0.198 Sum_probs=94.9
Q ss_pred CceEEEecCCCHHHH-HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEec
Q psy4398 102 NKIILQIGTADPERA-LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~g~~~~~~-~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir 177 (306)
.|+...+...++++. .++++.+++ ||..+-+.+|+. +++.-.+.++++|+.++ +++.+...
T Consensus 137 v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDaN 201 (381)
T 3fcp_A 137 LPVLWTLASGDTAKDIAEGEKLLAEGRHRAFKLKIGAR---------------ELATDLRHTRAIVEALGDRASIRVDVN 201 (381)
T ss_dssp EEBCEEECSSCHHHHHHHHHHHTC----CEEEEECCSS---------------CHHHHHHHHHHHHHHTCTTCEEEEECT
T ss_pred eeeEEEecCCChHHHHHHHHHHHHhCCCCEEEEecCCC---------------ChHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 455555655566654 445555564 899999987652 34555678899999884 67888888
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+|+.+++.++++.+++.|+.+|- ++. .+.+++..+++++.+++||++...+.+..+++++++.
T Consensus 202 ~~~~~~~A~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~ 265 (381)
T 3fcp_A 202 QAWDAATGAKGCRELAAMGVDLIE-------QPV-SAHDNAALVRLSQQIETAILADEAVATAYDGYQLAQQ 265 (381)
T ss_dssp TCBCHHHHHHHHHHHHHTTCSEEE-------CCB-CTTCHHHHHHHHHHSSSEEEESTTCCSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhhcCcccee-------CCC-CcccHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHc
Confidence 789999999999999999998883 222 3458999999999999999999999999999998875
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0014 Score=62.34 Aligned_cols=148 Identities=9% Similarity=0.027 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
+.+++++++.++.+. +||..+-+++|+ +++.-.+.++++|+.+ ++++.+....+|+.+++.
T Consensus 199 ~~~~e~~~~~a~~~~~~Gf~~~KlKvG~----------------~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~ 262 (441)
T 4a35_A 199 GYSDDTLKQLCAQALKDGWTRFKVKVGA----------------DLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAV 262 (441)
T ss_dssp TCCHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEcCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 458899988887664 599999998764 3445566788888887 467888888789999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-C
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH---LKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-K 262 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~---~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~ 262 (306)
++++.+++.++.+|- ++. .+.+++..+++++. +++||.+.-.+.+..++.++++.+. ...+.-++ .
T Consensus 263 ~~~~~L~~~~~~~iE-------eP~-~~~d~~~~~~l~~~l~~~~iPIa~gE~~~~~~~~~~~l~~~a--~div~~d~~~ 332 (441)
T 4a35_A 263 EWMSKLAKFKPLWIE-------EPT-SPDDILGHATISKALVPLGIGIATGEQCHNRVIFKQLLQAKA--LQFLQIDSCR 332 (441)
T ss_dssp HHHHHHGGGCCSEEE-------CCS-CTTCHHHHHHHHHHHGGGTCEEEECTTCCSHHHHHHHHHTTC--CSEECCCTTT
T ss_pred HHHHhhcccCccEEe-------CCC-CcccHHHHHHHHHhccCCCCCEEeCCccccHHHHHHHHHcCC--CCEEEECccc
Confidence 999999999988883 222 34578888999987 7899999999999999999887532 00111122 2
Q ss_pred ch----HHHHHHHHHhcCCCCCcce
Q psy4398 263 LP----KTILYAHCKYKRFEVPKYE 283 (306)
Q Consensus 263 ~~----~~~l~~~~~~~g~~~~~~~ 283 (306)
+. -+.+.+..+++|+++..+.
T Consensus 333 ~GGit~~~kia~lA~~~gv~v~~H~ 357 (441)
T 4a35_A 333 LGSVNENLSVLLMAKKFEIPVCPHA 357 (441)
T ss_dssp SSHHHHHHHHHHHHHHTTCCBCCCC
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 21 1266777888888865543
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00056 Score=64.53 Aligned_cols=149 Identities=10% Similarity=0.093 Sum_probs=102.2
Q ss_pred HHHHH-HhcCCCEEEEccCCCccccccCCccccc-cCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHHHHHHH
Q psy4398 118 EAAKK-VEHDVAAIDINMGCPKQFSLTGGMGAAL-LSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLE 193 (306)
Q Consensus 118 ~aa~~-~~~g~d~veln~gcP~~~~~~~~~G~~l-~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~ 193 (306)
+.++. +++||..+-++-..+. . .+-|... ..+++...+.++++|+++ ++++.+....+|+.+++.++++.|+
T Consensus 162 ~~a~~~~~~G~~~~K~~~~~~~---~-~K~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~ 237 (410)
T 3dip_A 162 VLAESLVAEGYAAMKIWPFDDF---A-SITPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALA 237 (410)
T ss_dssp HHHHHHHHTTCSEEEECTTHHH---H-TTCTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCEEEECCccCc---c-ccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33443 3469999999521111 0 1122211 113556788999999988 4688888888899999999999999
Q ss_pred HcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-C----chHHHH
Q psy4398 194 ACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-K----LPKTIL 268 (306)
Q Consensus 194 ~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~----~~~~~l 268 (306)
+.|+++|. ++...+.+++..+++++.+++||++.+.+.+.++++++++.+.. ..+.-++ . ..-+.+
T Consensus 238 ~~~i~~iE-------qP~~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~--d~v~~k~~~~GGit~~~~i 308 (410)
T 3dip_A 238 DYGVLWVE-------DPIAKMDNIPAVADLRRQTRAPICGGENLAGTRRFHEMLCADAI--DFVMLDLTWCGGLSEGRKI 308 (410)
T ss_dssp GGTCSEEE-------CCBSCTTCHHHHHHHHHHHCCCEEECTTCCSHHHHHHHHHTTCC--SEEEECTTTSSCHHHHHHH
T ss_pred hcCCCEEE-------CCCCCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCC--CeEeecccccCCHHHHHHH
Confidence 99999886 22023457899999999999999999999999999999886320 0011122 1 122366
Q ss_pred HHHHHhcCCCC
Q psy4398 269 YAHCKYKRFEV 279 (306)
Q Consensus 269 ~~~~~~~g~~~ 279 (306)
.+..+++|++.
T Consensus 309 a~~A~~~gi~~ 319 (410)
T 3dip_A 309 AALAETHARPL 319 (410)
T ss_dssp HHHHHHTTCCE
T ss_pred HHHHHHcCCEE
Confidence 77788888874
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0004 Score=61.96 Aligned_cols=126 Identities=12% Similarity=0.069 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChH---HHHHHHHHHHhcccccEEEEecc--C-CChHH-HHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPD---IACNILTTLISNLSIPVSCKIRV--F-HNEAD-TIAL 188 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~---~~~eiv~~v~~~~~~pv~vKir~--g-~~~~~-~~~~ 188 (306)
..++...++.|+|.|++-+. +|.....+.+ .+.+-++++++.++ ...+|+=+ + .+.++ ....
T Consensus 109 v~E~~~Av~~GAdEIDmVin----------ig~lksg~~~~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~L~d~e~i~~A 177 (281)
T 2a4a_A 109 LNDTEKALDDGADEIDLVIN----------YKKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIKT 177 (281)
T ss_dssp HHHHHHHHHHTCSEEEEECC----------HHHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecc----------hHhhhCCChhHHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHH
Confidence 34444455679999998532 3333334556 77778888888874 24555443 1 23344 6688
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh------------CCCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH------------LKIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~------------~~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
++...++|+|+|-.+-. ...+.+.++.++.+++. .+++|-++|||+|.+++.++++.+. .+|.
T Consensus 178 ~~ia~eaGADfVKTSTG----f~~~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~~lG~ 253 (281)
T 2a4a_A 178 TLAVLNGNADFIKTSTG----KVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRFLSS 253 (281)
T ss_dssp HHHHHTTTCSEEECCCS----CSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhCCCEEEeCCC----CCCCCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhhhhccc
Confidence 99999999999975422 11123344444333333 2689999999999999999998776 4554
Q ss_pred c
Q psy4398 256 N 256 (306)
Q Consensus 256 a 256 (306)
.
T Consensus 254 ~ 254 (281)
T 2a4a_A 254 L 254 (281)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00025 Score=66.47 Aligned_cols=97 Identities=10% Similarity=0.162 Sum_probs=73.6
Q ss_pred ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhCCCcE
Q psy4398 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHLKIPV 231 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~~ipv 231 (306)
+++.+.++++++++. +.++.++++. . ...+.++.+.++|+|.+.+++....+.+..+ ..|+.+.++++.+++||
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~--~--~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~~pv 214 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSP--Q--NVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPV 214 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECT--T--THHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCSSCE
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCC--c--cHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcCCCE
Confidence 788889999999886 8999999883 2 3567788888899999999865422223233 26667889999999999
Q ss_pred EEecCCCCHHHHHHHHHhhh---hhcc
Q psy4398 232 IANGGSKEIVDYGGVFSLNC---AFLR 255 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~v---~vGr 255 (306)
|+ |||.|+++++.+++.|+ .+|+
T Consensus 215 i~-ggi~t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 215 IA-GGVNDYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp EE-ECCCSHHHHHHHHTTTCSEEEESC
T ss_pred EE-CCcCCHHHHHHHHHcCCCEEEECC
Confidence 98 89999999999998765 5555
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=64.87 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=87.8
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
+.|+..+=+-.++.+.. .....|+|+|-|.. ..+. +.+.++++..++ .+..+.|-+.
T Consensus 106 ~lPvl~kdfI~d~~qi~---~a~~~GAD~VlL~~--------------~~l~--~~l~~l~~~a~~-lGl~~lvev~--- 162 (254)
T 1vc4_A 106 DLPLLRKDFVVDPFMLE---EARAFGASAALLIV--------------ALLG--ELTGAYLEEARR-LGLEALVEVH--- 162 (254)
T ss_dssp CSCEEEESCCCSHHHHH---HHHHTTCSEEEEEH--------------HHHG--GGHHHHHHHHHH-HTCEEEEEEC---
T ss_pred CCCEEECCcCCCHHHHH---HHHHcCCCEEEECc--------------cchH--HHHHHHHHHHHH-CCCeEEEEEC---
Confidence 45665544345554332 22345999999942 2222 456667665544 4655555555
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---h
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---A 252 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~ 252 (306)
+.+ + ++.+.+.|+|.|-++.+..... ..+++...++.+.+ ++|+|+.|||.|++|+..+.+ |+ .
T Consensus 163 ~~~---E-~~~a~~~gad~IGvn~~~l~~~---~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvl 234 (254)
T 1vc4_A 163 TER---E-LEIALEAGAEVLGINNRDLATL---HINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVL 234 (254)
T ss_dssp SHH---H-HHHHHHHTCSEEEEESBCTTTC---CBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEE
T ss_pred CHH---H-HHHHHHcCCCEEEEccccCcCC---CCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEE
Confidence 222 3 2356678999999988764322 24667777777766 789999999999999999998 76 9
Q ss_pred hccccCCCCCc
Q psy4398 253 FLRNHYPVEKL 263 (306)
Q Consensus 253 vGrall~~p~~ 263 (306)
+|++++..+..
T Consensus 235 VGsAl~~~~d~ 245 (254)
T 1vc4_A 235 IGTSLMRAPDL 245 (254)
T ss_dssp ECHHHHTSSCH
T ss_pred EeHHHcCCCCH
Confidence 99999986543
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00048 Score=58.52 Aligned_cols=71 Identities=23% Similarity=0.240 Sum_probs=55.0
Q ss_pred HHHHHcCCcEEEEcccCCC---CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCC
Q psy4398 190 KRLEACGIIAIGVHGRTKA---ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEK 262 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~---~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~ 262 (306)
..+.+.|+|++.+++.... +. ..+.+|+.++++++.+++||++.|||+ .+++.++++. ++.+|++++..|.
T Consensus 122 ~~~~~~g~d~i~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~~d 198 (215)
T 1xi3_A 122 LEAEKKGADYLGAGSVFPTKTKED-ARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAVISAVMGAED 198 (215)
T ss_dssp HHHHHHTCSEEEEECSSCC----C-CCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEESHHHHTSSS
T ss_pred HHHHhcCCCEEEEcCCccCCCCCC-CCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEEEhHHHhCCCC
Confidence 4456789999998653211 11 235688999999998899999999999 9999998876 4599999987664
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00017 Score=63.24 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=54.1
Q ss_pred HHHHHHcCCcEEEEcccCCCC--CCCCCCcHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 189 CKRLEACGIIAIGVHGRTKAE--RPRHRNRIEMIRTLTQH--LKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~--~~~~p~~~~~v~~i~~~--~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
++.+.+.|+|+|.+....... ....+..++.++++++. .++||++.||| +.+++.++++.| +++|++++..+
T Consensus 148 a~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~a~ 226 (243)
T 3o63_A 148 VAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITSAD 226 (243)
T ss_dssp HHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEESHHHHTCS
T ss_pred HHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhCCC
Confidence 455667999999996642211 11135678999999987 48999999999 799999999875 59999998754
Q ss_pred C
Q psy4398 262 K 262 (306)
Q Consensus 262 ~ 262 (306)
.
T Consensus 227 d 227 (243)
T 3o63_A 227 D 227 (243)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00035 Score=67.66 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=78.9
Q ss_pred HHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-c-ccEEEEeccCCChHHHHHHHHHHHHcC
Q psy4398 120 AKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-S-IPVSCKIRVFHNEADTIALCKRLEACG 196 (306)
Q Consensus 120 a~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~-~pv~vKir~g~~~~~~~~~a~~l~~~G 196 (306)
++.+ +.|++.+.++...- ++..+.+.++.+++.. + .|+.++-- .+ .+-++.+.++|
T Consensus 247 ~~~l~e~gv~~l~Vd~~~g---------------~~~~~~~~i~~lk~~~~~~~~Vi~G~V--~t----~~~a~~l~~aG 305 (503)
T 1me8_A 247 VPALVEAGADVLCIDSSDG---------------FSEWQKITIGWIREKYGDKVKVGAGNI--VD----GEGFRYLADAG 305 (503)
T ss_dssp HHHHHHHTCSEEEECCSCC---------------CSHHHHHHHHHHHHHHGGGSCEEEEEE--CS----HHHHHHHHHHT
T ss_pred HHHHHhhhccceEEecccC---------------cccchhhHHHHHHHhCCCCceEeeccc--cC----HHHHHHHHHhC
Confidence 4444 34888888864421 2233556667887776 4 78887655 33 45666778899
Q ss_pred CcEEEEcccCCCC----C---CCCCCcHHHHHHHHhhC---------CCcEEEecCCCCHHHHHHHHHhhh---hhcccc
Q psy4398 197 IIAIGVHGRTKAE----R---PRHRNRIEMIRTLTQHL---------KIPVIANGGSKEIVDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 197 ~d~i~v~~~~~~~----~---~~~p~~~~~v~~i~~~~---------~ipvia~GGI~s~~~~~~~l~~~v---~vGral 257 (306)
+|++.+ +..... + ..+.+.+..+.++.+++ ++|||+.|||.+..|+.+++..|+ ++||++
T Consensus 306 ad~I~V-g~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~ 384 (503)
T 1me8_A 306 ADFIKI-GIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYF 384 (503)
T ss_dssp CSEEEE-CSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred CCeEEe-cccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 999998 432211 1 11234566666665443 699999999999999999999864 999988
Q ss_pred C
Q psy4398 258 Y 258 (306)
Q Consensus 258 l 258 (306)
+
T Consensus 385 ~ 385 (503)
T 1me8_A 385 A 385 (503)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00021 Score=62.14 Aligned_cols=139 Identities=12% Similarity=0.170 Sum_probs=91.8
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEcc--CC--CccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINM--GC--PKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF 179 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~--gc--P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 179 (306)
+..||...|..++.+..+.++.|+|.+.+.. |+ |+- .+| .++++++|+.++.|+.+-+=..
T Consensus 3 i~pSila~D~~~l~~~i~~~~~gad~lHvDvmDG~fvpn~-----t~G----------~~~v~~lr~~~~~~~dvhLmv~ 67 (231)
T 3ctl_A 3 ISPSLMCMDLLKFKEQIEFIDSHADYFHIDIMDGHFVPNL-----TLS----------PFFVSQVKKLATKPLDCHLMVT 67 (231)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHTTCSCEEEEEECSSSSSCC-----CBC----------HHHHHHHHTTCCSCEEEEEESS
T ss_pred EEeehhhCChhhHHHHHHHHHcCCCEEEEEEEeCccCccc-----hhc----------HHHHHHHHhccCCcEEEEEEec
Confidence 4567777777788888887755999755432 32 431 222 3478888887778877766542
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccC-C---------------------------------------------CCCCC-
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRT-K---------------------------------------------AERPR- 212 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~-~---------------------------------------------~~~~~- 212 (306)
+++ ++++.+.++|+|.+++|.-. . ..++.
T Consensus 68 -dp~---~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pGfgg 143 (231)
T 3ctl_A 68 -RPQ---DYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAG 143 (231)
T ss_dssp -CGG---GTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTTCSS
T ss_pred -CHH---HHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccCcCC
Confidence 332 35577778888888876422 0 00011
Q ss_pred ---CCCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhc-cccCCCCC
Q psy4398 213 ---HRNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFL-RNHYPVEK 262 (306)
Q Consensus 213 ---~p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vG-rall~~p~ 262 (306)
.+..++-++++++.. +++|.+-|||+ .+++.+++++|+ .+| |+++..+.
T Consensus 144 Q~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif~~~d 204 (231)
T 3ctl_A 144 QPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLFNHAE 204 (231)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTGGGCS
T ss_pred ccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHhCCCC
Confidence 133467777777765 68999999998 677888888764 999 99997443
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00057 Score=61.53 Aligned_cols=138 Identities=13% Similarity=0.152 Sum_probs=81.9
Q ss_pred CCceEEEecCCCH---H-----HHHHHHHHHhcCCCEEEEcc--CCCccccccCCccccccCChHHHHHHHHHHHhcccc
Q psy4398 101 KNKIILQIGTADP---E-----RALEAAKKVEHDVAAIDINM--GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI 170 (306)
Q Consensus 101 ~~p~ivql~g~~~---~-----~~~~aa~~~~~g~d~veln~--gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~ 170 (306)
+.|+|+.+.+++. + -+.++.+.++.|+|+|.+++ +.+. + ....+.+.++++...+ .++
T Consensus 105 ~~~lil~l~~~t~~~~~~~~~~l~~~ve~Av~~GAdaV~~~i~~Gs~~-------~----~~~l~~i~~v~~~a~~-~Gl 172 (295)
T 3glc_A 105 NRPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEY-------E----HQSIKNIIQLVDAGMK-VGM 172 (295)
T ss_dssp CCCEEEECEECCCTTSCTTCCEECSCHHHHHHTTCSEEEEEECTTSTT-------H----HHHHHHHHHHHHHHHT-TTC
T ss_pred CccEEEEEcCCCcCCCCCccchhHHHHHHHHHCCCCEEEEEEECCCCc-------H----HHHHHHHHHHHHHHHH-cCC
Confidence 4568887765431 1 11223333456999988853 3211 0 0112233344444433 378
Q ss_pred cEEEEeccC----CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC-CHHH---
Q psy4398 171 PVSCKIRVF----HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK-EIVD--- 242 (306)
Q Consensus 171 pv~vKir~g----~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~-s~~~--- 242 (306)
|+.+-...| .+.+.....++...+.|+|.|-..- .+ +.++++.+.+++||++.||+. +.++
T Consensus 173 pvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~-------t~----e~~~~vv~~~~vPVv~~GG~~~~~~~~l~ 241 (295)
T 3glc_A 173 PTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYY-------VE----KGFERIVAGCPVPIVIAGGKKLPEREALE 241 (295)
T ss_dssp CEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEEC-------CT----TTHHHHHHTCSSCEEEECCSCCCHHHHHH
T ss_pred EEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCC-------CH----HHHHHHHHhCCCcEEEEECCCCCHHHHHH
Confidence 887743322 2333356688999999999998761 11 235777778899999999998 4433
Q ss_pred -HHHHHHh---hhhhccccCCCC
Q psy4398 243 -YGGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 243 -~~~~l~~---~v~vGrall~~p 261 (306)
++++++. |+.+||+++..|
T Consensus 242 ~v~~ai~aGA~Gv~vGRnI~q~~ 264 (295)
T 3glc_A 242 MCWQAIDQGASGVDMGRNIFQSD 264 (295)
T ss_dssp HHHHHHHTTCSEEEESHHHHTSS
T ss_pred HHHHHHHhCCeEEEeHHHHhcCc
Confidence 3444454 459999998755
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00026 Score=66.59 Aligned_cols=145 Identities=7% Similarity=0.005 Sum_probs=100.7
Q ss_pred HHhcCCCEEEEccCCCccccccCCccccc-cCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 122 KVEHDVAAIDINMGCPKQFSLTGGMGAAL-LSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 122 ~~~~g~d~veln~gcP~~~~~~~~~G~~l-~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
.+++||..+-+..+.|... .. +++.. ..+++.-.+.++++|+.+ ++++.+....+|+.+++.++++.|++.|++
T Consensus 163 ~~~~G~~~~Kik~g~~~~~--~~-~~g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~ 239 (400)
T 4dxk_A 163 LLEDGITAMKIWPFDAAAE--KT-RGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTF 239 (400)
T ss_dssp HHHTTCCEEEECTTHHHHH--HH-TTSCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHTGGGCCS
T ss_pred HHHhCCCEEEEcCCCcccc--cc-ccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhhcCCC
Confidence 3456999999986632210 00 01111 123566788999999988 467888888789999999999999999999
Q ss_pred EEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-Cc----hHHHHHHHHH
Q psy4398 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-KL----PKTILYAHCK 273 (306)
Q Consensus 199 ~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~~----~~~~l~~~~~ 273 (306)
+|. ++ ..+.+++..+++++.+++||++...+.+.++++++++.+. ...+.-++ .+ .-+.+.+..+
T Consensus 240 ~iE-------eP-~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a--~d~v~~d~~~~GGit~~~kia~~A~ 309 (400)
T 4dxk_A 240 WHE-------DP-IKMDSLSSLTRYAAVSPAPISASETLGSRWAFRDLLETGA--AGVVMLDISWCGGLSEARKIASMAE 309 (400)
T ss_dssp EEE-------CC-BCTTSGGGHHHHHHHCSSCEEECTTCCHHHHHHHHHHTTC--CCEEEECTTTTTHHHHHHHHHHHHH
T ss_pred EEE-------cC-CCcccHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCC--CCEEEeCccccCCHHHHHHHHHHHH
Confidence 986 11 2245778889999999999999999999999999988532 00011122 11 1125667777
Q ss_pred hcCCCC
Q psy4398 274 YKRFEV 279 (306)
Q Consensus 274 ~~g~~~ 279 (306)
++|++.
T Consensus 310 ~~gi~~ 315 (400)
T 4dxk_A 310 AWHLPV 315 (400)
T ss_dssp HTTCCE
T ss_pred HcCCEE
Confidence 888774
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0023 Score=59.30 Aligned_cols=152 Identities=11% Similarity=0.060 Sum_probs=106.2
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccC
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVF 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g 179 (306)
.|+...+...+++++.+.++.+ ++||..+-+.+|.. +++.-.+.++++|+.+ +.++.+-...+
T Consensus 133 v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iK~Kvg~~---------------~~~~d~~~v~avr~~~~~~~l~vDaN~~ 197 (365)
T 3ik4_A 133 LETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGV---------------DVAYDLARLRAIHQAAPTAPLIVDGNCG 197 (365)
T ss_dssp EEBCEEECCSCHHHHHHHHHHHHHTTCCCEEEECCSS---------------CHHHHHHHHHHHHHHSSSCCEEEECTTC
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCCCEEEEEeCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 3455567778899988877755 46999999987642 3555667788888877 34566666667
Q ss_pred CChHHHHHHHHHH--HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhcccc
Q psy4398 180 HNEADTIALCKRL--EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNH 257 (306)
Q Consensus 180 ~~~~~~~~~a~~l--~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGral 257 (306)
|+.+++.++++.+ ++.++.+|- ++. .+.+++..+++++.+++||.+.-.+.+..+++++++.+. ...+
T Consensus 198 ~~~~~A~~~~~~L~~~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a--~d~v 267 (365)
T 3ik4_A 198 YDVERALAFCAACKAESIPMVLFE-------QPL-PREDWAGMAQVTAQSGFAVAADESARSAHDVLRIAREGT--ASVI 267 (365)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEE-------CCS-CTTCHHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHHTC--CSEE
T ss_pred CCHHHHHHHHHHHhhCCCCceEEE-------CCC-CcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCC--CCEE
Confidence 9999999999999 666665553 222 345889999999999999999999999999999887532 0000
Q ss_pred CCCC----CchHHHHHHHHHhcCCC
Q psy4398 258 YPVE----KLPKTILYAHCKYKRFE 278 (306)
Q Consensus 258 l~~p----~~~~~~l~~~~~~~g~~ 278 (306)
.-+| ...-+.+.++.+++|++
T Consensus 268 ~ik~~~GGit~~~~i~~~A~~~gi~ 292 (365)
T 3ik4_A 268 NIKLMKAGVAEGLKMIAIAQAAGLG 292 (365)
T ss_dssp EECHHHHCHHHHHHHHHHHHHHTCE
T ss_pred EEcCCccCHHHHHHHHHHHHHcCCe
Confidence 0011 11223566677778877
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00024 Score=63.01 Aligned_cols=149 Identities=9% Similarity=0.063 Sum_probs=81.0
Q ss_pred CCceEEEecCCCHH-HHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEe
Q psy4398 101 KNKIILQIGTADPE-RALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKI 176 (306)
Q Consensus 101 ~~p~ivql~g~~~~-~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 176 (306)
+.|++.|+.+.+|- .+....+.+++ ||.+| +|+..=- -..+.|-..|+++.--+.+.++.++.+- +. +++=+
T Consensus 94 ~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~ptvg--lidG~fr~~LEE~gm~~~~eve~I~~A~~~gL-~Ti~~ 169 (286)
T 2p10_A 94 HTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNFPTVG--LIDGLFRQNLEETGMSYAQEVEMIAEAHKLDL-LTTPY 169 (286)
T ss_dssp SSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EECSCGG--GCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-EECCE
T ss_pred CCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EECCCcc--cccchhhhhHhhcCCCHHHHHHHHHHHHHCCC-eEEEe
Confidence 57999999988873 23333466664 99999 9975211 1122333334443323344444443322 32 22222
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---CCc----HHHHHHHHhhC-----CCcEEEec-CCCCHHHH
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH---RNR----IEMIRTLTQHL-----KIPVIANG-GSKEIVDY 243 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~---p~~----~~~v~~i~~~~-----~ipvia~G-GI~s~~~~ 243 (306)
- .+ .+-++.+.++|+|.|.+|...-.+...+ +.. .+.+.++.+++ ++.|+..| ||.+++|+
T Consensus 170 v--~~----~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv 243 (286)
T 2p10_A 170 V--FS----PEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDA 243 (286)
T ss_dssp E--CS----HHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHH
T ss_pred c--CC----HHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHH
Confidence 2 23 4555666789999999997632221111 112 23444443332 45566555 99999999
Q ss_pred HHHHHh--hh---hhccccCC
Q psy4398 244 GGVFSL--NC---AFLRNHYP 259 (306)
Q Consensus 244 ~~~l~~--~v---~vGrall~ 259 (306)
+.+++. ++ ..++++.+
T Consensus 244 ~~~l~~t~G~~G~~gASsier 264 (286)
T 2p10_A 244 RFILDSCQGCHGFYGASSMER 264 (286)
T ss_dssp HHHHHHCTTCCEEEESHHHHH
T ss_pred HHHHhcCCCccEEEeehhhhc
Confidence 999986 43 44455443
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0013 Score=57.15 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=83.0
Q ss_pred HhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------C---------CCh--HHH
Q psy4398 123 VEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------F---------HNE--ADT 185 (306)
Q Consensus 123 ~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------g---------~~~--~~~ 185 (306)
++.|.|+|+|- ++..-..+.+.++++++|+ .++|+..-.+. | ++. .+.
T Consensus 33 ~~~GtDaI~vG--------------gs~gvt~~~~~~~v~~ik~-~~~Piil~p~~~~~~~~gaD~il~pslln~~~~~~ 97 (235)
T 3w01_A 33 CMSQTDAIMIG--------------GTDDVTEDNVIHLMSKIRR-YPLPLVLEISNIESVMPGFDFYFVPTVLNSTDVAF 97 (235)
T ss_dssp HTSSCSEEEEC--------------CSSCCCHHHHHHHHHHHTT-SCSCEEEECCCSTTCCTTCSEEEEEEETTBSSGGG
T ss_pred HHcCCCEEEEC--------------CcCCcCHHHHHHHHHHhcC-cCCCEEEecCCHHHhhcCCCEEEEccccCCCCcch
Confidence 45699999993 3333467888999999988 78888775442 1 011 111
Q ss_pred --HHHHHHHHHcCC-----cEEE-----EcccCC---------------------------CCC-----CCC-CCcHHHH
Q psy4398 186 --IALCKRLEACGI-----IAIG-----VHGRTK---------------------------AER-----PRH-RNRIEMI 220 (306)
Q Consensus 186 --~~~a~~l~~~G~-----d~i~-----v~~~~~---------------------------~~~-----~~~-p~~~~~v 220 (306)
-.-.+.+.+.|. +.|. +.+.+. ..+ +++ +.+.+++
T Consensus 98 i~g~~~~a~~~~gl~~~~~e~i~~gYivv~p~s~v~~v~~a~~~~~~e~iaa~A~~a~~~~g~~~vY~e~sG~~g~~~~v 177 (235)
T 3w01_A 98 HNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVMYIEYSGIYGDVSKV 177 (235)
T ss_dssp TTHHHHHHHHHHGGGCCGGGEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEEEECTTSCCCHHHH
T ss_pred hhhHHHHHHHHcCCCCcccceeeeeEEEECCCCChhhcccCCcCCCHHHHHHHHHHHHHHcCCCEEEEecCCCcCCHHHH
Confidence 122334666776 5554 211110 000 011 3478999
Q ss_pred HHHHhhC-CCcEEEecCCCCHHHHHHHHHh--hhhhccccCCCC
Q psy4398 221 RTLTQHL-KIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYPVE 261 (306)
Q Consensus 221 ~~i~~~~-~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~~p 261 (306)
+++++.+ ++|++..|||+|+++++++.+. ++.+|+++..||
T Consensus 178 ~~ir~~~~~~pv~vGfGI~~~e~a~~~~~gAD~VVVGSai~~~~ 221 (235)
T 3w01_A 178 QAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDI 221 (235)
T ss_dssp HHHHTTCSSSEEEEESCCCSHHHHHHHHTTSSEEEECTHHHHCH
T ss_pred HHHHHhcCCCCEEEECCcCCHHHHHHHHcCCCEEEECCceecCH
Confidence 9999999 9999999999999999998872 569999999987
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.002 Score=55.73 Aligned_cols=138 Identities=16% Similarity=0.228 Sum_probs=82.6
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc--c---------ccCCccccccCChHHH-------------
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF--S---------LTGGMGAALLSTPDIA------------- 157 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~--~---------~~~~~G~~l~~~~~~~------------- 157 (306)
+++.=|.+.+++++.+.++.+.+ |++.||+-+-.|... . ...++|.-+ +.+.+
T Consensus 18 ~ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGtvl--~~d~~~~A~~aGAd~v~~ 95 (224)
T 1vhc_A 18 KIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVL--TAEQVVLAKSSGADFVVT 95 (224)
T ss_dssp CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCC--SHHHHHHHHHHTCSEEEC
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEEeeCcEe--eHHHHHHHHHCCCCEEEE
Confidence 55665666777777777776654 788888865433210 0 001222211 11211
Q ss_pred ----HHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhC-CCcE
Q psy4398 158 ----CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHL-KIPV 231 (306)
Q Consensus 158 ----~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~-~ipv 231 (306)
.++++..++ .+.++...+. + ..-+..+.+.|+|+|-++. ..+. ..++++++++.+ ++|+
T Consensus 96 p~~d~~v~~~ar~-~g~~~i~Gv~---t----~~e~~~A~~~Gad~vk~Fp-------a~~~gG~~~lk~l~~~~~~ipv 160 (224)
T 1vhc_A 96 PGLNPKIVKLCQD-LNFPITPGVN---N----PMAIEIALEMGISAVKFFP-------AEASGGVKMIKALLGPYAQLQI 160 (224)
T ss_dssp SSCCHHHHHHHHH-TTCCEECEEC---S----HHHHHHHHHTTCCEEEETT-------TTTTTHHHHHHHHHTTTTTCEE
T ss_pred CCCCHHHHHHHHH-hCCCEEeccC---C----HHHHHHHHHCCCCEEEEee-------CccccCHHHHHHHHhhCCCCeE
Confidence 123344443 4444444322 2 2223556679999999954 1122 368999999999 8999
Q ss_pred EEecCCCCHHHHHHHHHh-hh---hhccccCC
Q psy4398 232 IANGGSKEIVDYGGVFSL-NC---AFLRNHYP 259 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~-~v---~vGrall~ 259 (306)
++.|||+ ++++.++++. ++ . |++++.
T Consensus 161 vaiGGI~-~~N~~~~l~agga~~v~-gS~i~~ 190 (224)
T 1vhc_A 161 MPTGGIG-LHNIRDYLAIPNIVACG-GSWFVE 190 (224)
T ss_dssp EEBSSCC-TTTHHHHHTSTTBCCEE-ECGGGC
T ss_pred EEECCcC-HHHHHHHHhcCCCEEEE-EchhcC
Confidence 9999995 6889899887 44 5 888875
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0015 Score=57.47 Aligned_cols=132 Identities=13% Similarity=0.046 Sum_probs=96.3
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
+.|++-+=+..++-+ ..+....|+|+|=|+..+ -+.+.+.++++..++ .+..+.|-+.
T Consensus 101 ~lPvLrKDfi~~~~q---i~ea~~~GAD~ilLi~a~---------------l~~~~l~~l~~~a~~-lGl~~lvEv~--- 158 (251)
T 1i4n_A 101 CRPILAKDFYIDTVQ---VKLASSVGADAILIIARI---------------LTAEQIKEIYEAAEE-LGMDSLVEVH--- 158 (251)
T ss_dssp CSCEEEECCCCSTHH---HHHHHHTTCSEEEEEGGG---------------SCHHHHHHHHHHHHT-TTCEEEEEEC---
T ss_pred CCCEEEeeCCCCHHH---HHHHHHcCCCEEEEeccc---------------CCHHHHHHHHHHHHH-cCCeEEEEeC---
Confidence 568887755555433 333234599999998653 123567788888766 5888888888
Q ss_pred ChHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh--hhhhcc
Q psy4398 181 NEADTIALCKRLEAC-GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL--NCAFLR 255 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~-G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~--~v~vGr 255 (306)
+.+ -++.+.+. |++.|-++.|..... ..+++...++.+.+ ++++|+-|||.+++|+..+.+. ++.+|+
T Consensus 159 ~~e----E~~~A~~l~g~~iIGinnr~l~t~---~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~a~avLVG~ 231 (251)
T 1i4n_A 159 SRE----DLEKVFSVIRPKIIGINTRDLDTF---EIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGKVNAVLVGT 231 (251)
T ss_dssp SHH----HHHHHHTTCCCSEEEEECBCTTTC---CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTTCSEEEECH
T ss_pred CHH----HHHHHHhcCCCCEEEEeCcccccC---CCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEcH
Confidence 323 35566778 999999998864332 23677888888887 6899999999999999999886 448999
Q ss_pred ccCCCC
Q psy4398 256 NHYPVE 261 (306)
Q Consensus 256 all~~p 261 (306)
++++.+
T Consensus 232 aimr~~ 237 (251)
T 1i4n_A 232 SIMKAE 237 (251)
T ss_dssp HHHHCS
T ss_pred HHcCCc
Confidence 998644
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0038 Score=55.85 Aligned_cols=138 Identities=11% Similarity=0.140 Sum_probs=93.1
Q ss_pred CCCCceEEEecCC-CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 99 REKNKIILQIGTA-DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 99 ~~~~p~ivql~g~-~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
..+.|+++.+-+. +.+ .+.+.++.||.-|.+..|. -.++++.+...++++...+ .+++|-.-+.
T Consensus 78 ~~~VPValHlDHg~~~e---~i~~ai~~GFtSVMiDgS~-----------~p~eeNi~~Tk~vv~~ah~-~gvsVEaElG 142 (288)
T 3q94_A 78 NITVPVAIHLDHGSSFE---KCKEAIDAGFTSVMIDASH-----------HPFEENVETTKKVVEYAHA-RNVSVEAELG 142 (288)
T ss_dssp TCCSCEEEEEEEECSHH---HHHHHHHHTCSEEEECCTT-----------SCHHHHHHHHHHHHHHHHT-TTCEEEEEES
T ss_pred CCCCcEEEECCCCCCHH---HHHHHHHcCCCeEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEee
Confidence 3567888888654 433 3333345688888886543 2345677788888877654 4777776666
Q ss_pred c-CCC----------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCC-HHHH
Q psy4398 178 V-FHN----------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243 (306)
Q Consensus 178 ~-g~~----------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~ 243 (306)
. |.. ..+..+..+..++.|+|.|-+.=.+..+.|.+ ..+++.+++|++.+++|++.-||-.. .++.
T Consensus 143 ~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~v~vpLVlHGgSG~~~e~i 222 (288)
T 3q94_A 143 TVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADI 222 (288)
T ss_dssp BCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCBSSCCSSSCCCCHHHHHHHHHHHCSCEEECCCTTCCHHHH
T ss_pred eeccccCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCcccCCcCCCCccCHHHHHHHHHhcCCCEEEeCCCCCCHHHH
Confidence 4 110 12345555666789999998754444444432 35889999999999999999999775 4557
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 223 ~~ai~~Gv 230 (288)
T 3q94_A 223 EKAISLGT 230 (288)
T ss_dssp HHHHHTTE
T ss_pred HHHHHcCC
Confidence 88888765
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00074 Score=58.66 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=88.5
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc---------c--ccCCccccccCChHHHHH----------
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF---------S--LTGGMGAALLSTPDIACN---------- 159 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~---------~--~~~~~G~~l~~~~~~~~e---------- 159 (306)
.+++.=+.+.++++..+.++.+.+ |++.||+.+..|... . ..-+.|.-+ +.+.+..
T Consensus 34 ~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGTVl--t~~~a~~Ai~AGA~fIv 111 (232)
T 4e38_A 34 LKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGTIL--NGEQALAAKEAGATFVV 111 (232)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEECCC--SHHHHHHHHHHTCSEEE
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECCcC--CHHHHHHHHHcCCCEEE
Confidence 367777888999999998887765 999999977665410 0 112233321 2333332
Q ss_pred -------HHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhC-CCc
Q psy4398 160 -------ILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHL-KIP 230 (306)
Q Consensus 160 -------iv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~-~ip 230 (306)
+++..++. ++|+...+. +..-+..+.++|+|+|-+.... +. ..++++.++..+ ++|
T Consensus 112 sP~~~~~vi~~~~~~-gi~~ipGv~-------TptEi~~A~~~Gad~vK~FPa~-------~~gG~~~lkal~~p~p~ip 176 (232)
T 4e38_A 112 SPGFNPNTVRACQEI-GIDIVPGVN-------NPSTVEAALEMGLTTLKFFPAE-------ASGGISMVKSLVGPYGDIR 176 (232)
T ss_dssp CSSCCHHHHHHHHHH-TCEEECEEC-------SHHHHHHHHHTTCCEEEECSTT-------TTTHHHHHHHHHTTCTTCE
T ss_pred eCCCCHHHHHHHHHc-CCCEEcCCC-------CHHHHHHHHHcCCCEEEECcCc-------cccCHHHHHHHHHHhcCCC
Confidence 22222221 334333332 2233344567999999886431 22 468999999988 799
Q ss_pred EEEecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 231 VIANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 231 via~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
+++.|||+ ++++.+.++.+. .+|+.+.
T Consensus 177 ~~ptGGI~-~~n~~~~l~aGa~~~vgGs~l~ 206 (232)
T 4e38_A 177 LMPTGGIT-PSNIDNYLAIPQVLACGGTWMV 206 (232)
T ss_dssp EEEBSSCC-TTTHHHHHTSTTBCCEEECGGG
T ss_pred eeeEcCCC-HHHHHHHHHCCCeEEEECchhc
Confidence 99999996 899999998754 5566655
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00022 Score=63.19 Aligned_cols=69 Identities=10% Similarity=-0.040 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+++.|++.+++-+-+. .+.+.++++.+.+.+||...|||++. ++++++ .|+ .+|++++.
T Consensus 38 ~dp~~~A~~~~~~Ga~~l~vvDL~~-------~n~~~i~~i~~~~~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a~~ 108 (260)
T 2agk_A 38 HPSSYYAKLYKDRDVQGCHVIKLGP-------NNDDAAREALQESPQFLQVGGGINDT-NCLEWL-KWASKVIVTSWLFT 108 (260)
T ss_dssp CCHHHHHHHHHHTTCTTCEEEEESS-------SCHHHHHHHHHHSTTTSEEESSCCTT-THHHHT-TTCSCEEECGGGBC
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCC-------CCHHHHHHHHhcCCceEEEeCCCCHH-HHHHHh-cCCCEEEECcHHHh
Confidence 3578999999999999999854432 47899999999999999999999987 999999 865 99999999
Q ss_pred C
Q psy4398 260 V 260 (306)
Q Consensus 260 ~ 260 (306)
|
T Consensus 109 ~ 109 (260)
T 2agk_A 109 K 109 (260)
T ss_dssp T
T ss_pred h
Confidence 8
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.003 Score=56.31 Aligned_cols=126 Identities=9% Similarity=-0.009 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCcccccc---CChHHHHHHHHHHHhcccccEEEEecc--C-CChHH-HHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL---STPDIACNILTTLISNLSIPVSCKIRV--F-HNEAD-TIAL 188 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~---~~~~~~~eiv~~v~~~~~~pv~vKir~--g-~~~~~-~~~~ 188 (306)
..++...++.|+|.||+=+. +|.... .+.+.+.+-++++++.++ +..+|+=+ + .+.++ ....
T Consensus 103 ~~Ea~~Av~~GAdEIDmVin----------ig~lk~~~~g~~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~e~i~~A 171 (297)
T 4eiv_A 103 SLEAVGALKDGADEIECLID----------WRRMNENVADGESRIRLLVSEVKKVVG-PKTLKVVLSGGELQGGDIISRA 171 (297)
T ss_dssp HHHHHHHHHTTCSEEEEECC----------THHHHHCHHHHHHHHHHHHHHHHHHHT-TSEEEEECCSSCCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeeee----------HHHHhcccCCcHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHH
Confidence 44555556679999997322 333333 466778888888888874 44556543 2 23344 5788
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC------------------------CCcEEEe-cCCCCHHHH
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL------------------------KIPVIAN-GGSKEIVDY 243 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~------------------------~ipvia~-GGI~s~~~~ 243 (306)
++.+.++|+|+|--+-. ...+.+.++.++.+++.+ ++-|=++ |||+|.+++
T Consensus 172 ~~ia~~AGADFVKTSTG----f~~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A 247 (297)
T 4eiv_A 172 AVAALEGGADFLQTSSG----LGATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETA 247 (297)
T ss_dssp HHHHHHHTCSEEECCCS----SSSCCCCHHHHHHHHHHHHHHHCC------------------CCEEEEECTTCCHHHHH
T ss_pred HHHHHHhCCCEEEcCCC----CCCCCCCHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCCCHHHH
Confidence 89999999999975322 222234444444443332 4778898 999999999
Q ss_pred HHHHHhhhhhccc
Q psy4398 244 GGVFSLNCAFLRN 256 (306)
Q Consensus 244 ~~~l~~~v~vGra 256 (306)
.++++..-.+|..
T Consensus 248 ~~~i~~~~elG~~ 260 (297)
T 4eiv_A 248 DFLMQMIFENGPR 260 (297)
T ss_dssp HHHHHHHHHHCGG
T ss_pred HHHHHHHHHhCcc
Confidence 9998854336655
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0049 Score=57.81 Aligned_cols=111 Identities=17% Similarity=0.199 Sum_probs=89.8
Q ss_pred HHHHHHHHHH-Hhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHH
Q psy4398 113 PERALEAAKK-VEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 113 ~~~~~~aa~~-~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a 189 (306)
++++++.++. +++ ||..+-+.+|. +++.-.+.++++|+.+ +.++.+....+|+.+++.+++
T Consensus 169 ~e~~~~~a~~~~~~~G~~~~K~KvG~----------------~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~ 232 (398)
T 4dye_A 169 PKAMAEHAVRVVEEGGFDAVKLKGTT----------------DCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAG 232 (398)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCS----------------CHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCC----------------CHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHH
Confidence 5777776664 467 99999997651 3445567788888887 567778777789999999999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+.+++.|+.+|- ++. + +++..+++++.+++||.+...+.+..+++++++.
T Consensus 233 ~~l~~~~i~~iE-------qP~--~-d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ 282 (398)
T 4dye_A 233 IALEELDLEYLE-------DPC--V-GIEGMAQVKAKVRIPLCTNMCVVRFEDFAPAMRL 282 (398)
T ss_dssp HHHGGGCCSEEE-------CCS--S-HHHHHHHHHHHCCSCEEESSSCCSGGGHHHHHHT
T ss_pred HHHhhcCCCEEc-------CCC--C-CHHHHHHHHhhCCCCEEeCCcCCCHHHHHHHHHh
Confidence 999999999884 222 2 7888999999999999999999999999999875
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.021 Score=53.05 Aligned_cols=205 Identities=14% Similarity=0.103 Sum_probs=118.1
Q ss_pred cccccccccc---CCceEEccCC--CCCCHH----HHHHHHHcCCCEEEecceechhhhh--h--hhhhh-------ccc
Q psy4398 20 ANANQANINY---SNKIILAPMV--RMNTLP----FRLLALDYGADLVYSEELVDHKLVK--T--ERKVN-------DLL 79 (306)
Q Consensus 20 ~~~~~~~l~l---~n~i~lAPm~--~~t~~~----~r~~~~~~G~g~~~te~~~~~~~~~--~--~~~~~-------~~l 79 (306)
..++|++..+ ..++++|=+. ...+.. +...++++||+.+=-.+..++.+.. . ....+ .++
T Consensus 14 ~~~~~~~~~ig~~~~~~IIAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~ 93 (385)
T 1vli_A 14 AAFQIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLV 93 (385)
T ss_dssp CEEEETTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHG
T ss_pred hheeECCEEeCCCCCcEEEEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHH
Confidence 3457777666 4578888443 444444 2334678899887665555444211 0 00000 000
Q ss_pred ccccccCCCCCceeeecCCCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHH
Q psy4398 80 NTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIAC 158 (306)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~ 158 (306)
...++.. ..++.+.+.+.+.|.+++-..+- . +.++.+++ ++|.+.| |+.-+++..++.
T Consensus 94 ~~~~l~~-e~~~~L~~~~~~~Gi~~~stpfD--~----~svd~l~~~~vd~~KI--------------gS~~~~N~pLL~ 152 (385)
T 1vli_A 94 QSMEMPA-EWILPLLDYCREKQVIFLSTVCD--E----GSADLLQSTSPSAFKI--------------ASYEINHLPLLK 152 (385)
T ss_dssp GGBSSCG-GGHHHHHHHHHHTTCEEECBCCS--H----HHHHHHHTTCCSCEEE--------------CGGGTTCHHHHH
T ss_pred HhcCCCH-HHHHHHHHHHHHcCCcEEEccCC--H----HHHHHHHhcCCCEEEE--------------CcccccCHHHHH
Confidence 0001110 01233444454555555444322 1 12233333 5677766 445556777655
Q ss_pred HHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecC
Q psy4398 159 NILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGI-IAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGG 236 (306)
Q Consensus 159 eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~-d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GG 236 (306)
++. ..+.||.+|.... +.+++...++.+.+.|. +.+.+|+.+.-.......|+..+..+++.+ ++||..++=
T Consensus 153 ~va-----~~gKPViLStGma-Tl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpVG~SdH 226 (385)
T 1vli_A 153 YVA-----RLNRPMIFSTAGA-EISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDH 226 (385)
T ss_dssp HHH-----TTCSCEEEECTTC-CHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEEEEC
T ss_pred HHH-----hcCCeEEEECCCC-CHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCEEeCCC
Confidence 543 3589999999975 88899999999999998 666678754433333346889999999999 999977755
Q ss_pred CCC-HHHHHHHHHhhh
Q psy4398 237 SKE-IVDYGGVFSLNC 251 (306)
Q Consensus 237 I~s-~~~~~~~l~~~v 251 (306)
-.. +.-...++..|+
T Consensus 227 t~G~~~~~~AAvAlGA 242 (385)
T 1vli_A 227 SEHPTEAPCAAVRLGA 242 (385)
T ss_dssp CSSSSHHHHHHHHTTC
T ss_pred CCCchHHHHHHHHcCC
Confidence 433 555555555554
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0078 Score=53.77 Aligned_cols=138 Identities=12% Similarity=0.095 Sum_probs=91.7
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
.+.|+++.+-+... +..+.+.++.||.-|.+..|. -.++++.+...++++...+ .+++|-.-+..
T Consensus 73 ~~VPValHlDHg~~--~e~i~~ai~~GFtSVMiDgS~-----------lp~eeNi~~Tk~vv~~ah~-~gvsVEaElG~v 138 (286)
T 1gvf_A 73 YNMPLALHLDHHES--LDDIRRKVHAGVRSAMIDGSH-----------FPFAENVKLVKSVVDFCHS-QDCSVEAELGRL 138 (286)
T ss_dssp TTSCBEEEEEEECC--HHHHHHHHHTTCCEEEECCTT-----------SCHHHHHHHHHHHHHHHHH-TTCEEEEEESCC
T ss_pred CCCcEEEEcCCCCC--HHHHHHHHHcCCCeEEECCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEeec
Confidence 45778877755421 233333345688888886442 2345677888888887765 46666666664
Q ss_pred CC-C-----------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCcHHHHHHHHhhCCCcEEEecCCCC-HHHH
Q psy4398 179 FH-N-----------EADTIALCKRLEACGIIAIGVHGRTKAERPRH--RNRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243 (306)
Q Consensus 179 g~-~-----------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~--p~~~~~v~~i~~~~~ipvia~GGI~s-~~~~ 243 (306)
|. . ..+..+..+.+++.|+|.|-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-.. .++.
T Consensus 139 gg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vpLVlHGgSG~~~e~i 218 (286)
T 1gvf_A 139 GGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFV 218 (286)
T ss_dssp C-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHH
T ss_pred cCcccCcccccccccCCCHHHHHHHHHHHCCCEEEeecCccccCcCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHH
Confidence 11 0 12345556666679999998755554444433 35789999999999999999998764 5567
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 219 ~~ai~~Gv 226 (286)
T 1gvf_A 219 RRTIELGV 226 (286)
T ss_dssp HHHHHTTE
T ss_pred HHHHHCCC
Confidence 88888765
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0017 Score=55.71 Aligned_cols=135 Identities=16% Similarity=0.062 Sum_probs=84.7
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-c--ccEEEEeccC
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-S--IPVSCKIRVF 179 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~--~pv~vKir~g 179 (306)
++++.+--.+.++..+.++.+..|+|.+|+.+- |+ ...-.++++++|+.. + +++++|+-
T Consensus 8 ~lilalD~~~~~~~~~~~~~~~~~vd~ie~g~~-~~---------------~~~G~~~i~~lr~~~~~~~i~ld~~l~-- 69 (218)
T 3jr2_A 8 MIQIALDQTNLTDAVAVASNVASYVDVIEVGTI-LA---------------FAEGMKAVSTLRHNHPNHILVCDMKTT-- 69 (218)
T ss_dssp EEEEEECCSSHHHHHHHHHHHGGGCSEEEECHH-HH---------------HHHTTHHHHHHHHHCTTSEEEEEEEEC--
T ss_pred CeEEEeCCCCHHHHHHHHHHhcCCceEEEeCcH-HH---------------HhcCHHHHHHHHHhCCCCcEEEEEeec--
Confidence 577788778888888888877668999999641 11 111135677777663 3 44566765
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCC---------------------C---------------C-CC-----------
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTK---------------------A---------------E-RP----------- 211 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------------------~---------------~-~~----------- 211 (306)
... ..+++.+.++|+|.+++|+-.. - + .|
T Consensus 70 d~p---~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~~~~~~~~~ 146 (218)
T 3jr2_A 70 DGG---AILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAEL 146 (218)
T ss_dssp SCH---HHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCHHHHH
T ss_pred ccH---HHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeecCCHHHHHHHHHcCccceeeeecccccc
Confidence 222 2255666777777777764210 0 0 00
Q ss_pred CC-CCcHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 212 RH-RNRIEMIRTLTQH--LKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 212 ~~-p~~~~~v~~i~~~--~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
.+ ....+.+..+++. .++|+++.|||+ ++++.++++.| +.+||+++.
T Consensus 147 ~g~~~~~~~l~~i~~~~~~~~pi~v~GGI~-~~~~~~~~~aGAd~vvvGsaI~~ 199 (218)
T 3jr2_A 147 AGIGWTTDDLDKMRQLSALGIELSITGGIV-PEDIYLFEGIKTKTFIAGRALAG 199 (218)
T ss_dssp HTCCSCHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSCEEEEEESGGGSH
T ss_pred CCCcCCHHHHHHHHHHhCCCCCEEEECCCC-HHHHHHHHHcCCCEEEEchhhcC
Confidence 00 0122344555554 379999999995 88888888875 499999985
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00048 Score=67.55 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCC--CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCH-----------HHHHHHHHh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKA--ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI-----------VDYGGVFSL 249 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~--~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~-----------~~~~~~l~~ 249 (306)
.+..++|+.+++.|+|.|++.+.+.. +....+.+++.++++++.+.+||+..|||++. ++++++++.
T Consensus 280 ~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~a 359 (555)
T 1jvn_A 280 GKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRS 359 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHc
Confidence 47899999999999999998665432 12223346899999999999999999999998 559999988
Q ss_pred hh---hhccccCC
Q psy4398 250 NC---AFLRNHYP 259 (306)
Q Consensus 250 ~v---~vGrall~ 259 (306)
|+ .+|++.+.
T Consensus 360 Gad~V~igt~~~~ 372 (555)
T 1jvn_A 360 GADKVSIGTDAVY 372 (555)
T ss_dssp TCSEEEECHHHHH
T ss_pred CCCEEEECCHHhh
Confidence 65 88887655
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0028 Score=54.31 Aligned_cols=141 Identities=15% Similarity=0.217 Sum_probs=86.9
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc-----c------ccCCccccccCChHHHH-----------
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF-----S------LTGGMGAALLSTPDIAC----------- 158 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~-----~------~~~~~G~~l~~~~~~~~----------- 158 (306)
.|++.=|-+.+++++.+.++.+.+ |++.||+-+-.|... . ...++|. +.. .+.+.
T Consensus 16 ~~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~vgagt-vi~-~d~~~~A~~aGAd~v~ 93 (214)
T 1wbh_A 16 GPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGT-VLN-PQQLAEVTEAGAQFAI 93 (214)
T ss_dssp CSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEES-CCS-HHHHHHHHHHTCSCEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCcCCEEeeCE-EEE-HHHHHHHHHcCCCEEE
Confidence 478888888888888888887755 899999976544310 0 0122332 211 12211
Q ss_pred ------HHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhC-CCc
Q psy4398 159 ------NILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHL-KIP 230 (306)
Q Consensus 159 ------eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~-~ip 230 (306)
++++..++ .+.++...+. + ..-+..+.+.|+|+|-++.. .+. ..+++++++..+ ++|
T Consensus 94 ~p~~d~~v~~~~~~-~g~~~i~G~~---t----~~e~~~A~~~Gad~v~~Fpa-------~~~gG~~~lk~i~~~~~~ip 158 (214)
T 1wbh_A 94 SPGLTEPLLKAATE-GTIPLIPGIS---T----VSELMLGMDYGLKEFKFFPA-------EANGGVKALQAIAGPFSQVR 158 (214)
T ss_dssp ESSCCHHHHHHHHH-SSSCEEEEES---S----HHHHHHHHHTTCCEEEETTT-------TTTTHHHHHHHHHTTCTTCE
T ss_pred cCCCCHHHHHHHHH-hCCCEEEecC---C----HHHHHHHHHCCCCEEEEecC-------ccccCHHHHHHHhhhCCCCe
Confidence 12222211 2334433322 2 22235556789999998541 122 368999999999 899
Q ss_pred EEEecCCCCHHHHHHHHHh-hh---hhccccCCCC
Q psy4398 231 VIANGGSKEIVDYGGVFSL-NC---AFLRNHYPVE 261 (306)
Q Consensus 231 via~GGI~s~~~~~~~l~~-~v---~vGrall~~p 261 (306)
+++.|||+ ++++.+.++. ++ . |++++..+
T Consensus 159 vvaiGGI~-~~n~~~~l~agg~~~v~-gS~i~~~~ 191 (214)
T 1wbh_A 159 FCPTGGIS-PANYRDYLALKSVLCIG-GSWLVPAD 191 (214)
T ss_dssp EEEBSSCC-TTTHHHHHTSTTBSCEE-EGGGSCHH
T ss_pred EEEECCCC-HHHHHHHHhcCCCeEEE-eccccChh
Confidence 99999996 6889999887 44 5 88887543
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=97.03 E-value=0.012 Score=51.51 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------------
Q psy4398 111 ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------------ 178 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------------ 178 (306)
.+|.++ |+..+.|+++|-+-.- .+.|||++ +-++++++.++.||..|-=+
T Consensus 64 ~dp~~i---A~~~~~GA~aiSVLTd-------~~~F~Gs~--------~~L~~vr~~v~lPvLrKDFiid~yQI~eAr~~ 125 (258)
T 4a29_A 64 RDPIEY---AKFMERYAVGLSITTE-------EKYFNGSY--------ETLRKIASSVSIPILMSDFIVKESQIDDAYNL 125 (258)
T ss_dssp CCHHHH---HHHHTTTCSEEEEECC-------STTTCCCH--------HHHHHHHTTCSSCEEEESCCCSHHHHHHHHHH
T ss_pred CCHHHH---HHHHhCCCeEEEEeCC-------CCCCCCCH--------HHHHHHHHhcCCCEeeccccccHHHHHHHHHc
Confidence 355443 4444469999887311 13456553 33577788899999888321
Q ss_pred C----------CChHHHHHHHHHHHHcCCcEEE-Ecc-------------------cCCCCCCCCCCcHHHHHHHHhhC-
Q psy4398 179 F----------HNEADTIALCKRLEACGIIAIG-VHG-------------------RTKAERPRHRNRIEMIRTLTQHL- 227 (306)
Q Consensus 179 g----------~~~~~~~~~a~~l~~~G~d~i~-v~~-------------------~~~~~~~~~p~~~~~v~~i~~~~- 227 (306)
| .+.++..++.+.+.+.|.+.++ +|. |.-. .-..+++...++.+.+
T Consensus 126 GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a~iIGINNRnL~---tf~vdl~~t~~L~~~ip 202 (258)
T 4a29_A 126 GADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIGARFIGIMSRDFE---TGEINKENQRKLISMIP 202 (258)
T ss_dssp TCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTCSEEEECSBCTT---TCCBCHHHHHHHHTTSC
T ss_pred CCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCCcEEEEeCCCcc---ccccCHHHHHHHHhhCC
Confidence 1 1234456666666666666554 433 2211 1124778888898887
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCC
Q psy4398 228 -KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEK 262 (306)
Q Consensus 228 -~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~ 262 (306)
++.+|+-+||.+++|+..+.+.|+ .||.++++.|.
T Consensus 203 ~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~d 241 (258)
T 4a29_A 203 SNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNPE 241 (258)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCTT
T ss_pred CCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCCc
Confidence 688999999999999999998764 99999998775
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.012 Score=52.65 Aligned_cols=184 Identities=11% Similarity=0.072 Sum_probs=100.7
Q ss_pred ceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec-C
Q psy4398 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG-T 110 (306)
Q Consensus 32 ~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~-g 110 (306)
..+..|. .-|.....++.+.|+..+++...+.... .+.+. .+.++-.+... .........+.|+++-+- |
T Consensus 15 ~~i~~~~--a~D~~sA~~~~~aG~~ai~vs~~~~a~~-~G~pD-~~~vt~~em~~-----~~~~I~~~~~~PviaD~d~G 85 (290)
T 2hjp_A 15 RLFTAMA--AHNPLVAKLAEQAGFGGIWGSGFELSAS-YAVPD-ANILSMSTHLE-----MMRAIASTVSIPLIADIDTG 85 (290)
T ss_dssp CCEEEEE--CSSHHHHHHHHHHTCSEEEECHHHHHHH-TTSCT-TTCSCHHHHHH-----HHHHHHTTCSSCEEEECTTT
T ss_pred CcEEEec--CCCHHHHHHHHHcCCCEEEEChHHHHHh-CCCCC-CCCCCHHHHHH-----HHHHHHhcCCCCEEEECCCC
Confidence 3444444 3566677777789998888874221111 11110 01111000000 000111223568887762 2
Q ss_pred -CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCcc--ccccCChHHHHHHHHHHHhcc---cccEEEEecc---CC
Q psy4398 111 -ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMG--AALLSTPDIACNILTTLISNL---SIPVSCKIRV---FH 180 (306)
Q Consensus 111 -~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G--~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~---g~ 180 (306)
.++++..+.++++. .|+++|.|.=+...+ +....| +.-+-..+...+-|++++++. +.-|..|.-. +.
T Consensus 86 yg~~~~~~~~v~~l~~aGa~gv~iED~~~~k--~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~ 163 (290)
T 2hjp_A 86 FGNAVNVHYVVPQYEAAGASAIVMEDKTFPK--DTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL 163 (290)
T ss_dssp TSSHHHHHHHHHHHHHHTCSEEEEECBCSSC--CC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTC
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEcCCCCCc--cccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccc
Confidence 27888888887665 599999997553111 112222 222223333344445554442 3334444432 12
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--CcEEEe
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK--IPVIAN 234 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~--ipvia~ 234 (306)
..+++++=++.++++|+|.|.+.++. .+.+.++++.+.++ +|+++|
T Consensus 164 g~~~ai~Ra~ay~eAGAd~i~~e~~~--------~~~~~~~~i~~~~~~~vP~i~n 211 (290)
T 2hjp_A 164 GQQEAVRRGQAYEEAGADAILIHSRQ--------KTPDEILAFVKSWPGKVPLVLV 211 (290)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCC--------SSSHHHHHHHHHCCCSSCEEEC
T ss_pred cHHHHHHHHHHHHHcCCcEEEeCCCC--------CCHHHHHHHHHHcCCCCCEEEe
Confidence 35788999999999999999998732 24478899999998 999987
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.026 Score=52.08 Aligned_cols=123 Identities=14% Similarity=0.186 Sum_probs=92.3
Q ss_pred eEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccC
Q psy4398 104 IILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVF 179 (306)
Q Consensus 104 ~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g 179 (306)
....+.. .++++..+.++.+.+ ||..+-+.+|.. +++.-.+.++++|+.++ ..+.+-...+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~K~Kvg~~---------------~~~~d~~~v~avr~~~g~~~~l~vDaN~~ 198 (370)
T 2chr_A 134 IAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR---------------SPQDDLIHMEALSNSLGSKAYLRVDVNQA 198 (370)
T ss_dssp BEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSS---------------CHHHHHHHHHHHHHHTTTTSEEEEECTTC
T ss_pred eeeeeccCchhhhHHHHHHHHhhcccceeecccccC---------------ChHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 3334443 456677777777765 899998876532 34444566788888874 4455666667
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
|+.+++.++++.+++.++.++- ++. .+.+++..+++++.+++||.+-=.+.+..++.++++.
T Consensus 199 ~~~~~A~~~~~~l~~~~~~~iE-------eP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~ 260 (370)
T 2chr_A 199 WDEQVASVYIPELEALGVELIE-------QPV-GRENTQALRRLSDNNRVAIMADESLSTLASAFDLARD 260 (370)
T ss_dssp CCTHHHHHHHHHHHTTTCCEEE-------CCS-CSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCceec-------CCC-ChhhhhhhhHHhhhccCCccCCccCCCHHHHHHHHHc
Confidence 9999999999999999988763 222 3458899999999999999988889999999998875
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.014 Score=52.32 Aligned_cols=123 Identities=11% Similarity=0.121 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|.|+|-++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~ 86 (292)
T 2vc6_A 18 IDEVALHDLVEWQIEEGSFGLVPCGTT----------GESPTLSKSEHEQVVEITIKTANGRVPVIAGAGS-NSTAEAIA 86 (292)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEETTSGG----------GTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-ccHHHHHH
Confidence 4667777777765 4599999885331 2222223344455666655544 4789888773 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia------~GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+.... |..|. -.++.++|.+++++|||. .|---+++...++.+
T Consensus 87 la~~A~~~Gadavlv~~P~----y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (292)
T 2vc6_A 87 FVRHAQNAGADGVLIVSPY----YNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFE 152 (292)
T ss_dssp HHHHHHHTTCSEEEEECCC----SSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCC----CCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHh
Confidence 9999999999999876432 32232 245667899999999887 444457888877765
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.034 Score=49.20 Aligned_cols=161 Identities=16% Similarity=0.205 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec--C--CCHHH
Q psy4398 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG--T--ADPER 115 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~--g--~~~~~ 115 (306)
+.-|.....++.+.|+..+.+....... ..+.+.. ..++-.+.+. .-+.+.+.. ...++++-+- + .++++
T Consensus 23 tayDa~sA~l~e~aG~d~ilvGdSl~~~-~lG~~dt-~~vTldemi~--h~~aV~r~~--~~~~vvaD~pfgsy~~s~~~ 96 (275)
T 1o66_A 23 TAYESSFAALMDDAGVEMLLVGDSLGMA-VQGRKST-LPVSLRDMCY--HTECVARGA--KNAMIVSDLPFGAYQQSKEQ 96 (275)
T ss_dssp ECCSHHHHHHHHHTTCCEEEECTTHHHH-TTCCSSS-TTCCHHHHHH--HHHHHHHHC--SSSEEEEECCTTSSSSCHHH
T ss_pred eCcCHHHHHHHHHcCCCEEEECHHHHHH-HcCCCCC-CCCCHHHHHH--HHHHHHhhC--CCCeEEEECCCCCccCCHHH
Confidence 3467888888889999988875321110 0010000 0000000000 000111111 1234555653 2 36777
Q ss_pred HHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--------------CC
Q psy4398 116 ALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--------------FH 180 (306)
Q Consensus 116 ~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--------------g~ 180 (306)
..+.+.++ +.|+++|.|--+ +...+.|+++.++ ++||..-+.+ |-
T Consensus 97 a~~na~rl~kaGa~aVklEdg-------------------~e~~~~I~al~~a-gIpV~gHiGLtPQs~~~~ggf~v~gr 156 (275)
T 1o66_A 97 AFAAAAELMAAGAHMVKLEGG-------------------VWMAETTEFLQMR-GIPVCAHIGLTPQSVFAFGGYKVQGR 156 (275)
T ss_dssp HHHHHHHHHHTTCSEEEEECS-------------------GGGHHHHHHHHHT-TCCEEEEEESCGGGTTC---------
T ss_pred HHHHHHHHHHcCCcEEEECCc-------------------HHHHHHHHHHHHc-CCCeEeeeccCceeecccCCeEEEeC
Confidence 77666655 569999999521 1234455555543 7788743332 11
Q ss_pred --ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 181 --NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 181 --~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
..+++++=|++++++||+.|.+.+. | -+.+++|.+.+++|+|+.|.
T Consensus 157 t~~a~~~i~rA~a~~eAGA~~ivlE~v--------p--~~~a~~it~~l~iP~igIGa 204 (275)
T 1o66_A 157 GGKAQALLNDAKAHDDAGAAVVLMECV--------L--AELAKKVTETVSCPTIGIGA 204 (275)
T ss_dssp --CHHHHHHHHHHHHHTTCSEEEEESC--------C--HHHHHHHHHHCSSCEEEESS
T ss_pred hHHHHHHHHHHHHHHHcCCcEEEEecC--------C--HHHHHHHHHhCCCCEEEECC
Confidence 1356888899999999999998763 2 26789999999999999875
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0024 Score=55.29 Aligned_cols=135 Identities=9% Similarity=0.056 Sum_probs=92.0
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHH---HHHhcccccEEEEec
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILT---TLISNLSIPVSCKIR 177 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~---~v~~~~~~pv~vKir 177 (306)
+.|+.+.|.-.+|+.|.+.. .. +|.+-+|..... .. +.+.++ .+++. +.-+.+-+.
T Consensus 64 ~~~~dvhLmv~dp~~~i~~~---~~-Ad~itvH~ea~~-------------~~---~~~~i~~~~~i~~~-G~k~gvaln 122 (227)
T 1tqx_A 64 SIFFDVHLMVEYPEKYVPLL---KT-SNQLTFHFEALN-------------ED---TERCIQLAKEIRDN-NLWCGISIK 122 (227)
T ss_dssp SCEEEEEEESSCGGGGGGGC---TT-SSEEEEEGGGGT-------------TC---HHHHHHHHHHHHTT-TCEEEEEEC
T ss_pred CCcEEEEEEEcCHHHHHHHH---Hh-CCEEEEeecCCc-------------cC---HHHHHHHHHHHHHc-CCeEEEEeC
Confidence 46899999999998776332 22 899999865411 02 234555 77653 554444444
Q ss_pred cCCChHHHHHHHHHHHHcC-CcEEEEccc---CCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh-
Q psy4398 178 VFHNEADTIALCKRLEACG-IIAIGVHGR---TKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC- 251 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G-~d~i~v~~~---~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v- 251 (306)
+ .+..+.++.+.+.| +|.|.+-.. ...+.+ .|..++-++++++.. +++|.+-|||+ .+++.+++++|+
T Consensus 123 --p--~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f-~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~ti~~~~~aGAd 196 (227)
T 1tqx_A 123 --P--KTDVQKLVPILDTNLINTVLVMTVEPGFGGQSF-MHDMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISASHGAN 196 (227)
T ss_dssp --T--TSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCC-CGGGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHHHHTCC
T ss_pred --C--CCcHHHHHHHhhcCCcCEEEEeeeccCCCCccc-chHHHHHHHHHHHhccCCeEEEECCCC-HHHHHHHHHcCCC
Confidence 2 22345556666666 999965443 333333 355788889999888 88999999998 889999998875
Q ss_pred --hhccccCCCCC
Q psy4398 252 --AFLRNHYPVEK 262 (306)
Q Consensus 252 --~vGrall~~p~ 262 (306)
.+||+++..+.
T Consensus 197 ~~V~GsaIf~~~d 209 (227)
T 1tqx_A 197 IIVAGTSIFNAED 209 (227)
T ss_dssp EEEESHHHHTCSS
T ss_pred EEEEeHHHhCCCC
Confidence 99999997544
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.026 Score=50.79 Aligned_cols=124 Identities=7% Similarity=0.077 Sum_probs=82.1
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
.+.|+++.+-|.. ++..+.+.++.||.-|.+..|. ..++++.+...++++...+ .++.|-.-+..
T Consensus 71 ~~VPValHlDHg~--~~e~~~~ai~~GFtSVMiDgS~-----------~p~eENi~~Tk~vv~~ah~-~gvsVEaELG~v 136 (305)
T 1rvg_A 71 ARVPVAVHLDHGS--SYESVLRALRAGFTSVMIDKSH-----------EDFETNVRETRRVVEAAHA-VGVTVEAELGRL 136 (305)
T ss_dssp CSSCEEEEEEEEC--SHHHHHHHHHTTCSEEEECCTT-----------SCHHHHHHHHHHHHHHHHH-TTCEEEEEESCC
T ss_pred CCCcEEEECCCCC--CHHHHHHHHHcCCCeeeeCCCC-----------CCHHHHHHHHHHHHHHHHH-cCCEEEEEEeec
Confidence 4567888776542 2333334445688888886442 2355677788888877764 46666666664
Q ss_pred -C-CC----------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCC----CCCcHHHHHHHHhhCCCcEEEecCC
Q psy4398 179 -F-HN----------EADTIALCKRLEACGIIAIGVHGRTKAERPR----HRNRIEMIRTLTQHLKIPVIANGGS 237 (306)
Q Consensus 179 -g-~~----------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~----~p~~~~~v~~i~~~~~ipvia~GGI 237 (306)
| .+ ..+..+..+.+++.|+|.|-+.=.+..+.|. ...+++.+++|++.+++|++..||-
T Consensus 137 gg~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~~vpLVlHGgS 211 (305)
T 1rvg_A 137 AGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGAS 211 (305)
T ss_dssp CCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCC
T ss_pred cCccCCccccccccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhcCCCEEEeCCC
Confidence 1 00 1234555556667899999876555444443 2358899999999999999999987
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.011 Score=53.34 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|.|+|-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 33 iD~~~l~~lv~~li~~Gv~gi~v~Gtt----------GE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~ 101 (304)
T 3l21_A 33 LDTATAARLANHLVDQGCDGLVVSGTT----------GESPTTTDGEKIELLRAVLEAVGDRARVIAGAGT-YDTAHSIR 101 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTT----------TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccc----------cchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-CCHHHHHH
Confidence 46677888777654 599999886442 1112223333455556555544 4788887753 56788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+.... |..|. -.++.++|.+++++||+.= |---+++...++.+
T Consensus 102 la~~a~~~Gadavlv~~P~----y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 167 (304)
T 3l21_A 102 LAKACAAEGAHGLLVVTPY----YSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALAS 167 (304)
T ss_dssp HHHHHHHHTCSEEEEECCC----SSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEECCCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 9999999999999986432 22221 2466788898899998753 44456777776654
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.026 Score=52.30 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=93.3
Q ss_pred HHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 121 KKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 121 ~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
+..++||..+-+..+. +++.-.+.++++|+.+ ++.+.+-...+|+.+++.++++.+++.++.
T Consensus 154 ~~~~~Gf~~~K~k~g~----------------~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~ 217 (378)
T 4hpn_A 154 ERRAEGFHACKIKIGF----------------GVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGID 217 (378)
T ss_dssp HHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHTTTSEEEEECTTCCCHHHHHHHHHHHGGGCCS
T ss_pred HHHHhccceecccccC----------------ChHHHHHHHHHHHHhcCCcEEEEEecCcccCHHHHHHHHhhhhhcccc
Confidence 3445699999887552 2444456788888887 455666666689999999999999999987
Q ss_pred EEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCCCch-------HHHHHHH
Q psy4398 199 AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEKLP-------KTILYAH 271 (306)
Q Consensus 199 ~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p~~~-------~~~l~~~ 271 (306)
+|- ++. .+.+++..+++++.+++||.+-=.+.+..++.++++.+. .-+-+|... -+.+.+.
T Consensus 218 ~iE-------eP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a----~d~i~~d~~~~GGit~~~~ia~~ 285 (378)
T 4hpn_A 218 WFE-------EPV-VPEQLDAYARVRAGQPIPVAGGETWHGRYGMWQALSAGA----VDILQPDLCGCGGFSEIQKIATL 285 (378)
T ss_dssp CEE-------CCS-CTTCHHHHHHHHHHSSSCEEECTTCCHHHHHHHHHHTTC----CSEECCBTTTTTHHHHHHHHHHH
T ss_pred hhh-------cCC-CccchhhhHHHHhhCCceeeCCcCccchHhHHHHHHcCC----CCEEeeCCeeCCChhHHHHHHHH
Confidence 763 222 345889999999999999998888999999999887532 111122111 1256666
Q ss_pred HHhcCCCC
Q psy4398 272 CKYKRFEV 279 (306)
Q Consensus 272 ~~~~g~~~ 279 (306)
.+++|++.
T Consensus 286 A~~~gi~v 293 (378)
T 4hpn_A 286 ATLHGVRI 293 (378)
T ss_dssp HHHHTCEE
T ss_pred HHHcCCeE
Confidence 77888773
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.016 Score=52.24 Aligned_cols=123 Identities=14% Similarity=0.158 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|.|+|-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtT----------GE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~-~~t~~ai~ 98 (301)
T 1xky_A 30 IDFAKTTKLVNYLIDNGTTAIVVGGTT----------GESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGS-NNTHASID 98 (301)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTT----------TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCC-CCHHHHHH
Confidence 45677777777554 599999986432 2222223344455566555544 4788888773 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~~l~ 248 (306)
+++.++++|+|++.+.... |..|. -+++.++|.+++++|||. | .|+ -+++.+.++.+
T Consensus 99 la~~A~~~Gadavlv~~P~----y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 164 (301)
T 1xky_A 99 LTKKATEVGVDAVMLVAPY----YNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE 164 (301)
T ss_dssp HHHHHHHTTCSEEEEECCC----SSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEEcCCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence 9999999999999876432 32222 246678888888999776 3 243 46777776654
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0096 Score=56.62 Aligned_cols=142 Identities=14% Similarity=0.096 Sum_probs=100.7
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
+.|++-+=+..++-+ ..+....|+|+|=|++.+- +.+.+.++++..++ .+..+.|-+.
T Consensus 108 ~lPvLrKDFI~d~~Q---i~ea~~~GAD~ILLi~a~l---------------~~~~l~~l~~~a~~-lgm~~LvEvh--- 165 (452)
T 1pii_A 108 PQPILCKDFIIDPYQ---IYLARYYQADACLLMLSVL---------------DDDQYRQLAAVAHS-LEMGVLTEVS--- 165 (452)
T ss_dssp CSCEEEESCCCSHHH---HHHHHHTTCSEEEEETTTC---------------CHHHHHHHHHHHHH-TTCEEEEEEC---
T ss_pred CCCeEEEeccCCHHH---HHHHHHcCCCEEEEEcccC---------------CHHHHHHHHHHHHH-cCCeEEEEeC---
Confidence 456666655555533 3332345999999987641 23567888888776 5888888888
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh--hhhhccc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL--NCAFLRN 256 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~--~v~vGra 256 (306)
+ .+-++.+.+.|++.|-+..|..... ..+++...++.+.+ ++++|+-|||.+++|+..+.+. ++.+|.+
T Consensus 166 ~----~eE~~~A~~lga~iIGinnr~L~t~---~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~a~avLVGea 238 (452)
T 1pii_A 166 N----EEEQERAIALGAKVVGINNRDLRDL---SIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHFANGFLIGSA 238 (452)
T ss_dssp S----HHHHHHHHHTTCSEEEEESEETTTT---EECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTTCSEEEECHH
T ss_pred C----HHHHHHHHHCCCCEEEEeCCCCCCC---CCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHhCCEEEEcHH
Confidence 2 3444556678999999998865332 24678888888877 6899999999999999999886 4489999
Q ss_pred cCCCCCchHHHHHHHH
Q psy4398 257 HYPVEKLPKTILYAHC 272 (306)
Q Consensus 257 ll~~p~~~~~~l~~~~ 272 (306)
+++.+. +...++++.
T Consensus 239 lmr~~d-~~~~~~~l~ 253 (452)
T 1pii_A 239 LMAHDD-LHAAVRRVL 253 (452)
T ss_dssp HHTCSC-HHHHHHHHH
T ss_pred HcCCcC-HHHHHHHHH
Confidence 987543 333445554
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.017 Score=51.90 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|+|+|-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 25 iD~~~l~~lv~~li~~Gv~gl~~~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~ 93 (297)
T 3flu_A 25 IHYEQLRDLIDWHIENGTDGIVAVGTT----------GESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGA-NNTVEAIA 93 (297)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTT----------TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccc----------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-cCHHHHHH
Confidence 4567777777765 4599999996443 1112223333455555555544 4788887663 56788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+.... |..|. -.++.++|.+++++||+.= |---+++.+.++.+
T Consensus 94 la~~a~~~Gadavlv~~P~----y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 159 (297)
T 3flu_A 94 LSQAAEKAGADYTLSVVPY----YNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAE 159 (297)
T ss_dssp HHHHHHHTTCSEEEEECCC----SSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEECCCC----CCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHHc
Confidence 9999999999999876432 22222 2567788899999998753 33346666666543
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.027 Score=51.46 Aligned_cols=123 Identities=14% Similarity=0.062 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|.|+|-++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 52 iD~~~l~~lv~~li~~Gv~Gl~v~GtT----------GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~-~st~eai~ 120 (332)
T 2r8w_A 52 VDIEAFSALIARLDAAEVDSVGILGST----------GIYMYLTREERRRAIEAAATILRGRRTLMAGIGA-LRTDEAVA 120 (332)
T ss_dssp BCHHHHHHHHHHHHHHTCSEEEESSTT----------TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHH
Confidence 46677777777554 599999986432 2222223444455666665554 4789888773 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~~l~ 248 (306)
+++.++++|+|++.+.... |..|. -+++.++|.+++++|||. | .|+ -+++.+.++.+
T Consensus 121 la~~A~~~Gadavlv~~P~----Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~ 186 (332)
T 2r8w_A 121 LAKDAEAAGADALLLAPVS----YTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAY 186 (332)
T ss_dssp HHHHHHHHTCSEEEECCCC----SSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEECCCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHc
Confidence 9999999999999886432 32222 256778889999999876 3 243 47777777654
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.019 Score=51.52 Aligned_cols=122 Identities=15% Similarity=0.043 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|.|+|-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~ 86 (294)
T 2ehh_A 18 VDYEALGNLIEFHVDNGTDAILVCGTT----------GESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGG-NATHEAVH 86 (294)
T ss_dssp ECHHHHHHHHHHHHTTTCCEEEESSTT----------TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHH
Confidence 35677777777654 599999986332 1122223333455555555544 4788888763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGGVF 247 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~~l 247 (306)
+++.+++.|+|++.+.... |..|. -.++.++|.+++++||+. | .|+ -+++.+.++.
T Consensus 87 la~~A~~~Gadavlv~~P~----y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 151 (294)
T 2ehh_A 87 LTAHAKEVGADGALVVVPY----YNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLA 151 (294)
T ss_dssp HHHHHHHTTCSEEEEECCC----SSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHH
Confidence 9999999999999876432 32222 245678888888999766 3 243 4788777776
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.017 Score=52.30 Aligned_cols=123 Identities=12% Similarity=0.079 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|+|+|-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 41 iD~~~l~~lv~~li~~Gv~Gl~v~GtT----------GE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~-~st~eai~ 109 (314)
T 3qze_A 41 LDWDSLAKLVDFHLQEGTNAIVAVGTT----------GESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGA-NSTREAVA 109 (314)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSGG----------GTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-cCHHHHHH
Confidence 4567777777765 4599999885332 2222223333345555555444 4788887663 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+.... |..|. -.++.++|.+++++||+.= |---+++.+.++.+
T Consensus 110 la~~A~~~Gadavlv~~P~----y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 175 (314)
T 3qze_A 110 LTEAAKSGGADACLLVTPY----YNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSK 175 (314)
T ss_dssp HHHHHHHTTCSEEEEECCC----SSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEcCCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 9999999999999876432 22221 2567788888899998763 33446777666554
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.004 Score=54.27 Aligned_cols=144 Identities=10% Similarity=0.034 Sum_probs=92.9
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEcc--C--CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINM--G--CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~--g--cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
+..+|...+...+.+..+.+.+ |+|.+.+.. | +|+- .+| .++++++|+.+.. .+++=.
T Consensus 16 i~psila~D~~~l~~~i~~~~~~gad~lhvDvmDG~fvpn~-----t~G----------~~~v~~lr~~~~~--DvhLMv 78 (237)
T 3cu2_A 16 LSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLF-----TVG----------AIGIKYFPTHCFK--DVHLMV 78 (237)
T ss_dssp EEEEGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCB-----CBC----------THHHHTSCTTSEE--EEEEEC
T ss_pred EEEeeeeCCcccHHHHHHHHHHcCCCEEEEEEecCccccch-----hhh----------HHHHHHHhhhCCC--CeEEEE
Confidence 7788888888888888887765 899865542 2 2431 122 2467777776543 666642
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccC-----------C-C---------CC---------------------------
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRT-----------K-A---------ER--------------------------- 210 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~-----------~-~---------~~--------------------------- 210 (306)
+ +...+++.+.++|+|.+++|.-. + . +.
T Consensus 79 --~--~p~~~i~~~~~aGAd~itvH~ea~~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~l~~~D~vlv 154 (237)
T 3cu2_A 79 --R--NQLEVAKAVVANGANLVTLQLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYLDQIDVIQL 154 (237)
T ss_dssp --S--CHHHHHHHHHHTTCSEEEEETTCTTSHHHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTTTTTCSEEEE
T ss_pred --E--CHHHHHHHHHHcCCCEEEEecCCcccHHHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHHhhcCceeee
Confidence 1 23567777888888888876421 0 1 10
Q ss_pred ------CCC----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHH--hhh---hhccccCCCCCchHHHHHH
Q psy4398 211 ------PRH----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFS--LNC---AFLRNHYPVEKLPKTILYA 270 (306)
Q Consensus 211 ------~~~----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~--~~v---~vGrall~~p~~~~~~l~~ 270 (306)
+.+ +..++-++++++.. ++||.+-|||+ .+++.++++ .|+ .+||+++.. .+...++.
T Consensus 155 Msv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSaIf~~--d~~~~~~~ 231 (237)
T 3cu2_A 155 LTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLVSGSALFSG--ELKTNLKV 231 (237)
T ss_dssp ESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEECGGGGSS--CHHHHHHH
T ss_pred eeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeHHhCC--CHHHHHHH
Confidence 000 11256667777776 58999999998 889999999 754 999999974 23434444
Q ss_pred H
Q psy4398 271 H 271 (306)
Q Consensus 271 ~ 271 (306)
|
T Consensus 232 l 232 (237)
T 3cu2_A 232 W 232 (237)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.011 Score=55.22 Aligned_cols=148 Identities=10% Similarity=0.016 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
.+++++++.++.+. .||..+-+..+.. +++.=.+.++++|+++ ++.+.+-...+|+.+++.+
T Consensus 163 ~~~~~~~~~~~~~~~~G~~~~Kikvg~~---------------~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~ 227 (388)
T 4h83_A 163 EPLGSIADEMHNYQELGLAGVKFKVGGL---------------SAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVD 227 (388)
T ss_dssp CTTCSHHHHHHHHHHHTBSEEEEECSSS---------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCceEeecCCCC---------------CHHHHHHHHHHHHHhcCCCeEEEEecCcCCCHHHHHH
Confidence 34567777766555 5999999976532 2333345678888877 3566666666899999999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCCCch---
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEKLP--- 264 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p~~~--- 264 (306)
+++.+++.++.+|- ++.....+++..+++++.+++||.+-=.+.+..++.++++.+. .-+-+|...
T Consensus 228 ~~~~l~~~~~~~iE-------eP~~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a----~d~i~~d~~~~G 296 (388)
T 4h83_A 228 LSRRIADLNIRWFE-------EPVEWHNDKRSMRDVRYQGSVPVCAGQTEFSASGCRDLMETGA----IDVCNFDSSWSG 296 (388)
T ss_dssp HHHHTTTSCCCCEE-------SCBCSTTHHHHHHHHHHHSSSCEEECTTCSSHHHHHHHHHHTC----CSEECCCGGGTT
T ss_pred HHHHhhhcCcceee-------cCcccccchHHHHHHHhhcCCCccCCccccChHhHHHHHHcCC----CCeEeecceeCC
Confidence 99999999887763 2222223577889999999999998888999999999988632 111222221
Q ss_pred ----HHHHHHHHHhcCCCCCccee
Q psy4398 265 ----KTILYAHCKYKRFEVPKYET 284 (306)
Q Consensus 265 ----~~~l~~~~~~~g~~~~~~~~ 284 (306)
-+.+.+..+.+|+.+.++-+
T Consensus 297 Git~~~kia~~A~~~gv~v~~h~~ 320 (388)
T 4h83_A 297 GPTAWLRTAAIATSYDVQMGHHEE 320 (388)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCSC
T ss_pred CHHHHHHHHHHHHHCCCEEEecCH
Confidence 12555667788877655543
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0093 Score=54.12 Aligned_cols=122 Identities=12% Similarity=0.035 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+|+|-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+. .+..++++
T Consensus 30 iD~~~l~~lv~~li~~Gv~Gl~v~GtT----------GE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg--~~t~~ai~ 97 (316)
T 3e96_A 30 IDWHHYKETVDRIVDNGIDVIVPCGNT----------SEFYALSLEEAKEEVRRTVEYVHGRALVVAGIG--YATSTAIE 97 (316)
T ss_dssp BCHHHHHHHHHHHHTTTCCEECTTSGG----------GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC--SSHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCccc----------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeC--cCHHHHHH
Confidence 35677787777654 599999885332 2222223334455555555544 479999987 38899999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e-cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N-GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~-GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+.... |..|. -+++.++|.+++++||+. | |---+++.+.++.+
T Consensus 98 la~~A~~~Gadavlv~~P~----y~~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La~ 159 (316)
T 3e96_A 98 LGNAAKAAGADAVMIHMPI----HPYVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLAP 159 (316)
T ss_dssp HHHHHHHHTCSEEEECCCC----CSCCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHTT
T ss_pred HHHHHHhcCCCEEEEcCCC----CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHc
Confidence 9999999999999986332 22221 256778899988999765 4 43346666665543
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.015 Score=52.65 Aligned_cols=121 Identities=14% Similarity=0.101 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|+|+|-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 42 iD~~~l~~lv~~li~~Gv~Gi~v~GtT----------GE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~-~~t~~ai~ 110 (315)
T 3na8_A 42 LDLPALGRSIERLIDGGVHAIAPLGST----------GEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSD-LTTAKTVR 110 (315)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEECSSGG----------GTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHH
Confidence 4567777777765 4599999886332 2222223334455555555544 4788887663 56788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGV 246 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~ 246 (306)
+++.+++.|+|++.+.... |..|. -+++.++|.+++++||+.= |---+++.+.++
T Consensus 111 la~~A~~~Gadavlv~~P~----y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 174 (315)
T 3na8_A 111 RAQFAESLGAEAVMVLPIS----YWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRI 174 (315)
T ss_dssp HHHHHHHTTCSEEEECCCC----SSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCC----CCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHH
Confidence 9999999999999986432 22221 3567788999999997653 333467777666
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.017 Score=51.61 Aligned_cols=122 Identities=12% Similarity=0.075 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|.|+|-++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~ 86 (289)
T 2yxg_A 18 VDFDGLEENINFLIENGVSGIVAVGTT----------GESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGS-NCTEEAIE 86 (289)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEEESSTT----------TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHH
Confidence 3567777777755 4599999995432 2222223334455555555544 4788888763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGGVF 247 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~~l 247 (306)
+++.+++.|+|++.+.... |..|. -+++.++|.+++++||+. | .|+ -+++.+.++.
T Consensus 87 la~~a~~~Gadavlv~~P~----y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 151 (289)
T 2yxg_A 87 LSVFAEDVGADAVLSITPY----YNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLA 151 (289)
T ss_dssp HHHHHHHHTCSEEEEECCC----SSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 9999999999999876432 32232 245678888888999776 3 243 4788877776
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.018 Score=51.50 Aligned_cols=123 Identities=13% Similarity=0.100 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|+|+|-++.+. +-+..+ ..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~Gtt--------GE~~~L--s~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~ 87 (291)
T 3tak_A 19 VDWKSLEKLVEWHIEQGTNSIVAVGTT--------GEASTL--SMEEHTQVIKEIIRVANKRIPIIAGTGA-NSTREAIE 87 (291)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSTT--------TTGGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccc--------cccccC--CHHHHHHHHHHHHHHhCCCCeEEEeCCC-CCHHHHHH
Confidence 3567777777755 4599999885432 111222 3333355555555544 4788887663 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+.... |..|. -.++.++|.+++++||+.= |---+++.+.++.+
T Consensus 88 la~~a~~~Gadavlv~~P~----y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 153 (291)
T 3tak_A 88 LTKAAKDLGADAALLVTPY----YNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLAE 153 (291)
T ss_dssp HHHHHHHHTCSEEEEECCC----SSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHTT
T ss_pred HHHHHHhcCCCEEEEcCCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHHc
Confidence 9999999999999876432 22221 2567788888889998753 33346666666543
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.017 Score=52.20 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|+|+|-++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtT----------GE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-~st~~ai~ 98 (306)
T 1o5k_A 30 LDLESYERLVRYQLENGVNALIVLGTT----------GESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGT-NSTEKTLK 98 (306)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGG----------GTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccc----------cchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCC-ccHHHHHH
Confidence 3567777777755 4599999986332 2222223334455555555544 4788888763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGGVF 247 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~~l 247 (306)
+++.++++|+|++.+.... |..|. -.++.++|.+++++||+. | .|+ -+++.+.++.
T Consensus 99 la~~A~~~Gadavlv~~P~----y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 163 (306)
T 1o5k_A 99 LVKQAEKLGANGVLVVTPY----YNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIA 163 (306)
T ss_dssp HHHHHHHHTCSEEEEECCC----SSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCC----CCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 9999999999999876432 32222 245678888888999766 3 343 4777777776
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.014 Score=52.69 Aligned_cols=126 Identities=12% Similarity=0.086 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|.|+|=++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 26 iD~~~l~~lv~~li~~Gv~gl~v~GtT----------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~ 94 (309)
T 3fkr_A 26 LDLASQKRAVDFMIDAGSDGLCILANF----------SEQFAITDDERDVLTRTILEHVAGRVPVIVTTSH-YSTQVCAA 94 (309)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESSGG----------GTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-chHHHHHH
Confidence 4667788777765 4599999985332 2222223344455566655544 4789888863 56788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEEe-----cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIAN-----GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia~-----GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+....-. ....|. -.++.+.|.+++++|||.= |---+++...++.+
T Consensus 95 la~~A~~~Gadavlv~~Pyy~-~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~~~La~ 162 (309)
T 3fkr_A 95 RSLRAQQLGAAMVMAMPPYHG-ATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAR 162 (309)
T ss_dssp HHHHHHHTTCSEEEECCSCBT-TTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCCCc-cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHh
Confidence 999999999999988643110 001221 2567788999989887653 33346777777664
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.02 Score=51.74 Aligned_cols=127 Identities=12% Similarity=0.063 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+|+|=++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 32 iD~~~l~~lv~~li~~Gv~Gl~v~GtT----------GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~ 100 (307)
T 3s5o_A 32 VDYGKLEENLHKLGTFPFRGFVVQGSN----------GEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGC-ESTQATVE 100 (307)
T ss_dssp BCHHHHHHHHHHHTTSCCSEEEESSGG----------GTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCC-CCHHHHHH
Confidence 35677777777654 599999886332 2222234445567777777766 4788887652 47788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCC-CCCCCCcHHHHHHHHhhCCCcEEEec-----C-CCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAE-RPRHRNRIEMIRTLTQHLKIPVIANG-----G-SKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~-~~~~p~~~~~v~~i~~~~~ipvia~G-----G-I~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+....-.. ......-+++.++|.+++++|||.=. | --+++.+.++.+
T Consensus 101 la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 168 (307)
T 3s5o_A 101 MTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQ 168 (307)
T ss_dssp HHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHHHHHHhc
Confidence 9999999999999885432110 01111135677888888899976532 3 236666666554
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.035 Score=50.03 Aligned_cols=123 Identities=11% Similarity=0.117 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|.|+|=++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 34 iD~~~l~~lv~~li~~Gv~gl~v~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~st~~ai~ 102 (304)
T 3cpr_A 34 IDIAAGREVAAYLVDKGLDSLVLAGTT----------GESPTTTAAEKLELLKAVREEVGDRAKLIAGVGT-NNTRTSVE 102 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTT----------TTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCC-CCHHHHHH
Confidence 45677777777554 599999986432 1122223333355555555544 4788888763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+... .|..|. -.++.++|.+++++||+. | .|+ -+++.+.++.+
T Consensus 103 la~~A~~~Gadavlv~~P----~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 168 (304)
T 3cpr_A 103 LAEAAASAGADGLLVVTP----YYSKPSQEGLLAHFGAIAAATEVPICLYDIPGRSGIPIESDTMRRLSE 168 (304)
T ss_dssp HHHHHHHTTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHhcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHc
Confidence 999999999999987643 232232 245678888888999766 3 243 46777766643
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0077 Score=57.94 Aligned_cols=95 Identities=15% Similarity=0.048 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC--------CCCCC--CcHHHHHHHHh
Q psy4398 156 IACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAE--------RPRHR--NRIEMIRTLTQ 225 (306)
Q Consensus 156 ~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~--------~~~~p--~~~~~v~~i~~ 225 (306)
...+.++.+++.+++|+.+|-- .+.+ -++.+. |+|.|.+ +..... ....| ..+..+.++.+
T Consensus 255 ~~L~~I~~l~~~~~vpvi~k~v--~~~~----~a~~l~--G~d~v~v-g~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~ 325 (486)
T 2cu0_A 255 KAIKSMKEMRQKVDADFIVGNI--ANPK----AVDDLT--FADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQ 325 (486)
T ss_dssp HHHHHHHHHHHTCCSEEEEEEE--CCHH----HHTTCT--TSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHhCCccccCCc--CCHH----HHHHhh--CCCeEEE-eeeeccceeeeEEeecCcchHHHHHHHHHHHH
Confidence 3455677788888899988755 2322 334444 9999998 321110 01111 12445566666
Q ss_pred hCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 226 HLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 226 ~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+++|||+.|||.+..|+.+++..|+ ++|++++.
T Consensus 326 ~~~vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~ 362 (486)
T 2cu0_A 326 EYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAG 362 (486)
T ss_dssp HHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred HcCCcEEecCCCCCHHHHHHHHHcCCCceeeChhhhc
Confidence 67899999999999999999998754 99999874
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.013 Score=53.10 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|.|+|-++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. +..++++
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtT----------GE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~--st~~ai~ 97 (314)
T 3d0c_A 30 IDWKGLDDNVEFLLQNGIEVIVPNGNT----------GEFYALTIEEAKQVATRVTELVNGRATVVAGIGY--SVDTAIE 97 (314)
T ss_dssp BCHHHHHHHHHHHHHTTCSEECTTSGG----------GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS--SHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECccc----------CChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc--CHHHHHH
Confidence 4567777777755 4599998875321 2222223344455566655544 4799998874 7788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e-cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N-GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~-GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+.... |..|. -.++.++|.+++++|||. | .|+-+++.+.++.+
T Consensus 98 la~~A~~~Gadavlv~~P~----y~~~s~~~l~~~f~~va~a~~lPiilYn~tg~l~~~~~~~La~ 159 (314)
T 3d0c_A 98 LGKSAIDSGADCVMIHQPV----HPYITDAGAVEYYRNIIEALDAPSIIYFKDAHLSDDVIKELAP 159 (314)
T ss_dssp HHHHHHHTTCSEEEECCCC----CSCCCHHHHHHHHHHHHHHSSSCEEEEECCTTSCTHHHHHHTT
T ss_pred HHHHHHHcCCCEEEECCCC----CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCHHHHHHHHc
Confidence 9999999999999886432 32232 256678899999999876 2 23256777766643
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.084 Score=46.86 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCc-eEEEec-C---CCHH
Q psy4398 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNK-IILQIG-T---ADPE 114 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p-~ivql~-g---~~~~ 114 (306)
+.-|.....++.+.|+..+.+....... ..+.+.. ..++-.+.+.- -+.+.+. ...| +++-+. | .+++
T Consensus 40 tayDa~sA~l~e~aG~d~ilvGdSl~~~-~lG~~dt-~~vTldemi~h--~~aV~r~---~~~~~vvaD~pfgsy~~s~~ 112 (281)
T 1oy0_A 40 TAYDYSTARIFDEAGIPVLLVGDSAANV-VYGYDTT-VPISIDELIPL--VRGVVRG---APHALVVADLPFGSYEAGPT 112 (281)
T ss_dssp ECCSHHHHHHHHTTTCCEEEECTTHHHH-TTCCSSS-SSCCGGGTHHH--HHHHHHH---CTTSEEEEECCTTSSTTCHH
T ss_pred eCcCHHHHHHHHHcCCCEEEECHHHHHH-HcCCCCC-CCCCHHHHHHH--HHHHHhc---CCCCeEEEECCCCcccCCHH
Confidence 3467888888888999988775321110 0110000 00000000000 0011111 2234 444443 2 2677
Q ss_pred HHHH-HHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--------------
Q psy4398 115 RALE-AAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-------------- 178 (306)
Q Consensus 115 ~~~~-aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-------------- 178 (306)
+..+ +.+.++ .|+++|.|--+ +...+.|+++.++ ++||.--+.+
T Consensus 113 ~a~~na~rl~~eaGa~aVklEdg-------------------~e~~~~I~al~~a-gIpV~gHiGLtPqsv~~~ggf~v~ 172 (281)
T 1oy0_A 113 AALAAATRFLKDGGAHAVKLEGG-------------------ERVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFRVQ 172 (281)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEBS-------------------GGGHHHHHHHHHH-TCCEEEEEECCC------------
T ss_pred HHHHHHHHHHHHhCCeEEEECCc-------------------HHHHHHHHHHHHC-CCCEEeeecCCcceecccCCeEEE
Confidence 6555 555666 49999999521 1234445555443 6787632222
Q ss_pred CCC--hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 179 FHN--EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 179 g~~--~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
|-+ .+++++=|++++++||+.|.+.+. | -+.+++|.+.+++|+|+.|.
T Consensus 173 grt~~a~~~i~rA~a~~eAGA~~ivlE~v--------p--~~~a~~it~~l~iP~igIGa 222 (281)
T 1oy0_A 173 GRGDAAEQTIADAIAVAEAGAFAVVMEMV--------P--AELATQITGKLTIPTVGIGA 222 (281)
T ss_dssp --CHHHHHHHHHHHHHHHHTCSEEEEESC--------C--HHHHHHHHHHCSSCEEEESS
T ss_pred eCcHHHHHHHHHHHHHHHcCCcEEEEecC--------C--HHHHHHHHHhCCCCEEEeCC
Confidence 112 245788889999999999999763 2 26789999999999999875
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.019 Score=53.68 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=100.7
Q ss_pred ceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccCC
Q psy4398 103 KIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVFH 180 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~ 180 (306)
|+...+...+++++.+.++.. ++||..+-+.+|.+.... .....++.-.+.++++|+.++ ..+.+-...+|
T Consensus 156 ~~~~t~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~-------~~~~~~~~di~~v~avR~a~~d~~L~vDaN~~w 228 (393)
T 3u9i_A 156 ETDVTITTGSVTAAARAAQAIVARGVTTIKIKIGAGDPDA-------TTIRTMEHDLARIVAIRDVAPTARLILDGNCGY 228 (393)
T ss_dssp ECCEEEC---CHHHHHHHHHHHTTTCCEEEEECC--------------CHHHHHHHHHHHHHHHHHSTTSEEEEECCSCC
T ss_pred EEEEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCCcccc-------cccccHHHHHHHHHHHHHHCCCCeEEEEccCCC
Confidence 334455566788888777755 469999999887543210 001124455667888888773 34555555579
Q ss_pred ChHHHHHHHHHH--HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhcccc
Q psy4398 181 NEADTIALCKRL--EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNH 257 (306)
Q Consensus 181 ~~~~~~~~a~~l--~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGral 257 (306)
+.+++.++++.+ ++.++.+|- ++. .+.+++..+++++.+++||.+-=.+.+..++.++++.+. .+ +
T Consensus 229 ~~~~A~~~~~~L~~~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~---i 297 (393)
T 3u9i_A 229 TAPDALRLLDMLGVHGIVPALFE-------QPV-AKDDEEGLRRLTATRRVPVAADESVASATDAARLARNAAVDV---L 297 (393)
T ss_dssp CHHHHHHHHHTTTTTTCCCSEEE-------CCS-CTTCTTHHHHHHHTCSSCEEESTTCCSHHHHHHHHHTTCCSE---E
T ss_pred CHHHHHHHHHHHhhCCCCeEEEE-------CCC-CCCcHHHHHHHHhhCCCcEEeCCcCCCHHHHHHHHHcCCCCE---E
Confidence 999999999999 777777763 222 245778889999999999998878999999999887532 00 0
Q ss_pred CCCC----CchHHHHHHHHHhcCCC
Q psy4398 258 YPVE----KLPKTILYAHCKYKRFE 278 (306)
Q Consensus 258 l~~p----~~~~~~l~~~~~~~g~~ 278 (306)
--++ ...-+.+.+..+++|++
T Consensus 298 ~~k~~~GGit~~~~ia~~A~~~gi~ 322 (393)
T 3u9i_A 298 NIKLMKCGIVEALDIAAIARTAGLH 322 (393)
T ss_dssp EECHHHHCHHHHHHHHHHHHHHTCE
T ss_pred EecccccCHHHHHHHHHHHHHcCCe
Confidence 0011 11222566777778877
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.065 Score=47.17 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEecCC---CHHHH
Q psy4398 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTA---DPERA 116 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g~---~~~~~ 116 (306)
+.-|.....++.+.|+..+.+...... ...+.+.. ..++-.+.+. .-+.+.+.. ...++++-+... ++++.
T Consensus 23 tayD~~sA~l~e~aG~d~ilvGdsl~~-~~lG~~dt-~~vtldemi~--h~~aV~r~~--~~~~vvaD~pfgsy~~~~~a 96 (264)
T 1m3u_A 23 TAYDYSFAKLFADEGLNVMLVGDSLGM-TVQGHDST-LPVTVADIAY--HTAAVRRGA--PNCLLLADLPFMAYATPEQA 96 (264)
T ss_dssp ECCSHHHHHHHHHHTCCEEEECTTHHH-HTTCCSSS-TTCCHHHHHH--HHHHHHHHC--TTSEEEEECCTTSSSSHHHH
T ss_pred eCcCHHHHHHHHHcCCCEEEECHHHHH-HHcCCCCC-CCcCHHHHHH--HHHHHHhhC--CCCcEEEECCCCCcCCHHHH
Confidence 345888888888999999888532111 01111000 0000000000 000111111 123456555322 67777
Q ss_pred HHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--------------CCC
Q psy4398 117 LEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--------------FHN 181 (306)
Q Consensus 117 ~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--------------g~~ 181 (306)
.+.+.++ +.|+++|.|--+ +...+.|+++.++ ++||.--+.+ |-+
T Consensus 97 ~~~a~rl~kaGa~aVklEgg-------------------~e~~~~I~al~~a-gipV~gHiGLtPq~v~~~ggf~v~grt 156 (264)
T 1m3u_A 97 FENAATVMRAGANMVKIEGG-------------------EWLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQGRG 156 (264)
T ss_dssp HHHHHHHHHTTCSEEECCCS-------------------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCCCCS
T ss_pred HHHHHHHHHcCCCEEEECCc-------------------HHHHHHHHHHHHC-CCCeEeeecCCceeecccCCeEEEeCC
Confidence 6666655 569999999411 1234455555543 7888733332 122
Q ss_pred h---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 182 E---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 182 ~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
. +++++=|++++++||+.|.+.+. | -+.+++|.+.+++|+|+.|.
T Consensus 157 ~~~a~~~i~rA~a~~eAGA~~ivlE~v--------p--~~~a~~it~~l~iP~igIGa 204 (264)
T 1m3u_A 157 DEAGDQLLSDALALEAAGAQLLVLECV--------P--VELAKRITEALAIPVIGIGA 204 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESC--------C--HHHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEecC--------C--HHHHHHHHHhCCCCEEEeCC
Confidence 2 45778889999999999999763 2 26789999999999999875
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.02 Score=53.05 Aligned_cols=125 Identities=10% Similarity=0.122 Sum_probs=90.7
Q ss_pred CceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc---ccEEEEec
Q psy4398 102 NKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS---IPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~---~pv~vKir 177 (306)
.|+-..+++.+++++.+.++.+ ++||..+-+.+|. .+++.-.+.++++++.++ +.+.+-..
T Consensus 152 vp~~~~i~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~---------------~~~~~d~~~v~avr~~~g~~~~~l~vDaN 216 (377)
T 2pge_A 152 IPVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLKIGA---------------IDFDKECALLAGIRESFSPQQLEIRVDAN 216 (377)
T ss_dssp EEBCEEECCCCHHHHHHHHHHHHHTTCSEEEEEC------------------CHHHHHHHHHHHHHHSCTTTCEEEEECT
T ss_pred EEEeEEecCCCHHHHHHHHHHHHHHhhhhheeecCC---------------CChHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 4555566677888887766655 4699999997553 245666778888888775 45556655
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHH--HHHHHHh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD--YGGVFSL 249 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~--~~~~l~~ 249 (306)
.+|+.+++.++++.+++.++.+|- ++. .+.+++-.+++++.+++||.+-=.+.+..+ ++++++.
T Consensus 217 ~~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~i~~ 282 (377)
T 2pge_A 217 GAFSPANAPQRLKRLSQFHLHSIE-------QPI-RQHQWSEMAALCANSPLAIALDEELIGLGAEQRSAMLDA 282 (377)
T ss_dssp TBBCTTTHHHHHHHHHTTCCSEEE-------CCB-CSSCHHHHHHHHHHCSSCEEESGGGTTCCTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCcEEE-------ccC-CcccHHHHHHHHhhCCCcEEECCccCCcchHHHHHHHHh
Confidence 578889999999999999887773 222 345889999999999999988777777666 5566654
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.024 Score=50.81 Aligned_cols=122 Identities=10% Similarity=0.056 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|+|+|-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 21 iD~~~l~~lv~~li~~Gv~gl~~~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~ 89 (294)
T 3b4u_A 21 VDIDAMIAHARRCLSNGCDSVTLFGTT----------GEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLV-DSIEDAAD 89 (294)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTT----------TTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-ccHHHHHH
Confidence 4567777777755 4599999986432 2222234455567777777766 4789988873 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCC-CC---cHHHHHHHHhhC---CCcEEE-e----cCC-CCHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRH-RN---RIEMIRTLTQHL---KIPVIA-N----GGS-KEIVDYGGVF 247 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~-p~---~~~~v~~i~~~~---~ipvia-~----GGI-~s~~~~~~~l 247 (306)
+++.+++.|+|++.+.... |.. |. -+++.++|.+++ ++||+. | .|+ -+++.+.++.
T Consensus 90 la~~A~~~Gadavlv~~P~----y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La 158 (294)
T 3b4u_A 90 QSAEALNAGARNILLAPPS----YFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLK 158 (294)
T ss_dssp HHHHHHHTTCSEEEECCCC----SSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEcCCc----CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHH
Confidence 9999999999999886432 222 22 256778899998 899776 3 243 4778777776
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.019 Score=52.14 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|+|+|-++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 40 iD~~~l~~li~~li~~Gv~Gl~v~GtT----------GE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~-~st~~ai~ 108 (315)
T 3si9_A 40 IDEKAFCNFVEWQITQGINGVSPVGTT----------GESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGS-NSTSEAVE 108 (315)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEECSSTT----------TTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccc----------cCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHH
Confidence 4667788877765 4599999885332 1122223333345555555544 4789887763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+.... |..|. -+++.+.|.+++++||+.= |---+++.+.++.+
T Consensus 109 la~~A~~~Gadavlv~~P~----y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 174 (315)
T 3si9_A 109 LAKHAEKAGADAVLVVTPY----YNRPNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCR 174 (315)
T ss_dssp HHHHHHHTTCSEEEEECCC----SSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCC----CCCCCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHh
Confidence 9999999999999876432 22222 2567788888899997753 33446777777665
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.016 Score=53.20 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|+|+|-++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 49 ID~~~l~~lv~~li~~Gv~Gl~v~GtT----------GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~-~st~eai~ 117 (343)
T 2v9d_A 49 LDKPGTAALIDDLIKAGVDGLFFLGSG----------GEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGG-TNARETIE 117 (343)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESSTT----------TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCS-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccc----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHH
Confidence 4667777777755 4599999986432 2222223344455566655544 4788888763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGGVF 247 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~~l 247 (306)
+++.+++.|+|++.+.... |..|. -+++.++|.+++++|||. | .|+ -+++.+.++.
T Consensus 118 la~~A~~~Gadavlv~~P~----Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La 182 (343)
T 2v9d_A 118 LSQHAQQAGADGIVVINPY----YWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLA 182 (343)
T ss_dssp HHHHHHHHTCSEEEEECCS----SSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 9999999999999876432 22222 245678888888999776 3 243 4777777766
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0065 Score=52.47 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=46.7
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHH-hhh---hhccccCC
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFS-LNC---AFLRNHYP 259 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~-~~v---~vGrall~ 259 (306)
+..+.+.|+|+|-++.. .+. ..++++.++..+ ++|+++.|||+ ++++.+.++ .++ . |++++.
T Consensus 132 ~~~A~~~Gad~vk~FPa-------~~~~G~~~lk~i~~~~~~ipvvaiGGI~-~~N~~~~l~~~Ga~~v~-gSai~~ 199 (225)
T 1mxs_A 132 IMMGYALGYRRFKLFPA-------EISGGVAAIKAFGGPFGDIRFCPTGGVN-PANVRNYMALPNVMCVG-TTWMLD 199 (225)
T ss_dssp HHHHHTTTCCEEEETTH-------HHHTHHHHHHHHHTTTTTCEEEEBSSCC-TTTHHHHHHSTTBCCEE-ECTTSC
T ss_pred HHHHHHCCCCEEEEccC-------ccccCHHHHHHHHhhCCCCeEEEECCCC-HHHHHHHHhccCCEEEE-EchhcC
Confidence 34556788888888531 111 368899999999 89999999995 788888888 444 6 888885
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.02 Score=53.86 Aligned_cols=117 Identities=12% Similarity=0.191 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~ 186 (306)
..++++.++.++... +||..+-+..+... +...+.++++|+.++ +.+.+-...+|+.+++.
T Consensus 186 ~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~----------------~~~~~~v~~vR~~~g~~~~l~vDaN~~~~~~~A~ 249 (412)
T 4h1z_A 186 EDTRAKRAELAAAWQAKGFSSFKFASPVAD----------------DGVAKEMEILRERLGPAVRIACDMHWAHTASEAV 249 (412)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEEGGGCT----------------TCHHHHHHHHHHHHCSSSEEEEECCSCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCcceeccccccch----------------hhHHHHHHHHHhccCCeEEEEeccccCCCHHHHH
Confidence 346778887777654 59999998644211 112344677777763 45556555579999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
++++.+++.|+.++- ++ ..+.+++..+++++.+++||.+.=.+.+..++.++++.+
T Consensus 250 ~~~~~l~~~~l~~iE-------qP-~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~ 305 (412)
T 4h1z_A 250 ALIKAMEPHGLWFAE-------AP-VRTEDIDGLARVAASVSTAIAVGEEWRTVHDMVPRVARR 305 (412)
T ss_dssp HHHHHHGGGCEEEEE-------CC-SCTTCHHHHHHHHHHCSSEEEECTTCCSHHHHHHHHHTT
T ss_pred HHHHhhcccccceec-------CC-CCccchHHHHHHHhhcCCccccCCcccchHhHHHHHHcC
Confidence 999999999987663 22 234588999999999999999888899999999988753
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.017 Score=51.95 Aligned_cols=123 Identities=11% Similarity=0.095 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|.|+|-++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 18 iD~~~l~~lv~~li~~Gv~gi~v~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~ 86 (297)
T 2rfg_A 18 VDEKALAGLVDWQIKHGAHGLVPVGTT----------GESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGS-NNPVEAVR 86 (297)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEECSSGG----------GTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCC-CCHHHHHH
Confidence 4667777777755 4599999885331 2222223344455555555544 4788888773 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e-----cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N-----GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~-----GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+.... |..|. -.++.++|.+++++|||. | |---+++.+.++.+
T Consensus 87 la~~A~~~Gadavlv~~P~----y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (297)
T 2rfg_A 87 YAQHAQQAGADAVLCVAGY----YNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAA 152 (297)
T ss_dssp HHHHHHHHTCSEEEECCCT----TTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEEcCCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence 9999999999999886432 32232 245678889999999766 3 33347777777654
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.068 Score=47.42 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=87.1
Q ss_pred CCceEEEec---CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc---cccEE
Q psy4398 101 KNKIILQIG---TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVS 173 (306)
Q Consensus 101 ~~p~ivql~---g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~ 173 (306)
+.|+++-+- |.++++..+.++++. .|+++|.|.=+..+ -|..+ -..+...+-|++++++. ++|+.
T Consensus 76 ~~pviaD~d~Gyg~~~~~~~~~v~~l~~aGaagv~iED~~~~-------~~k~l-~~~~e~~~~I~aa~~a~~~~g~~~~ 147 (275)
T 2ze3_A 76 AIPVNADIEAGYGHAPEDVRRTVEHFAALGVAGVNLEDATGL-------TPTEL-YDLDSQLRRIEAARAAIDASGVPVF 147 (275)
T ss_dssp SSCEEEECTTCSSSSHHHHHHHHHHHHHTTCSEEEEECBCSS-------SSSCB-CCHHHHHHHHHHHHHHHHHHTSCCE
T ss_pred CCCEEeecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCcCC-------CCCcc-CCHHHHHHHHHHHHHhHhhcCCCeE
Confidence 368888873 457888888887665 59999999754321 01222 34555556666665552 67766
Q ss_pred EEeccCC-----------ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC--CCCH
Q psy4398 174 CKIRVFH-----------NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG--SKEI 240 (306)
Q Consensus 174 vKir~g~-----------~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG--I~s~ 240 (306)
+--|..- ..+++++=++.++++|+|.|.+.+. .+.+.++++.+.+++|+-.+.+ ..+.
T Consensus 148 i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~---------~~~~~~~~i~~~~~~P~n~~~~~~~~~~ 218 (275)
T 2ze3_A 148 LNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLA---------LQSQDIRALADALRVPLNVMAFPGSPVP 218 (275)
T ss_dssp EEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTC---------CCHHHHHHHHHHCSSCEEEECCTTSCCH
T ss_pred EEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCC---------CCHHHHHHHHHhcCCCEEEecCCCCCCH
Confidence 6655421 2466888889999999999998763 3568999999999999877643 3444
Q ss_pred HHHHHHHHhh
Q psy4398 241 VDYGGVFSLN 250 (306)
Q Consensus 241 ~~~~~~l~~~ 250 (306)
+++-+.|
T Consensus 219 ---~eL~~lG 225 (275)
T 2ze3_A 219 ---RALLDAG 225 (275)
T ss_dssp ---HHHHHTT
T ss_pred ---HHHHHcC
Confidence 4444444
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0084 Score=54.16 Aligned_cols=122 Identities=12% Similarity=0.027 Sum_probs=73.3
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-CC------Ch-HHHHHHHHHHHHc
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-FH------NE-ADTIALCKRLEAC 195 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g~------~~-~~~~~~a~~l~~~ 195 (306)
+.|+|+|.+.+-... +.- . .+..+.+.+++++.+ ..++|+.+-+-. |. ++ +...+.++.+.+.
T Consensus 119 ~~GAdaV~vlv~~~~-----d~~--~-~~~~~~i~~v~~~~~-~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~l 189 (304)
T 1to3_A 119 RDGAKALKLLVLWRS-----DED--A-QQRLNMVKEFNELCH-SNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDS 189 (304)
T ss_dssp HTTCCEEEEEEEECT-----TSC--H-HHHHHHHHHHHHHHH-TTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTS
T ss_pred HcCCCEEEEEEEcCC-----Ccc--H-HHHHHHHHHHHHHHH-HcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHc
Confidence 459999986432100 000 0 112233344444433 348887776532 11 22 4456668999999
Q ss_pred CCcEEEEcccCCCCCCCCCCcHHHHHHHHhh----CCCc-EEEecCCCCHH----HHHHHHHh---hhhhccccCCC
Q psy4398 196 GIIAIGVHGRTKAERPRHRNRIEMIRTLTQH----LKIP-VIANGGSKEIV----DYGGVFSL---NCAFLRNHYPV 260 (306)
Q Consensus 196 G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~----~~ip-via~GGI~s~~----~~~~~l~~---~v~vGrall~~ 260 (306)
|+|++-++...- + ...++.+.++.+. +++| |+..||+ +.+ .++++++. |+.+||+++..
T Consensus 190 GaD~iKv~~~~~-~----~g~~~~~~~vv~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 190 GADLYKVEMPLY-G----KGARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSS 260 (304)
T ss_dssp SCSEEEECCGGG-G----CSCHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred CCCEEEeCCCcC-C----CCCHHHHHHHHHhccccCCCCeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEehHHhCc
Confidence 999998875321 0 0155666666666 8999 9999999 443 35666655 55999999865
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.019 Score=53.63 Aligned_cols=124 Identities=15% Similarity=0.155 Sum_probs=87.5
Q ss_pred ceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccCC
Q psy4398 103 KIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVFH 180 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g~ 180 (306)
|+...+...+++++.+.++.+ ++||..+-+.+|.. +++.-.+.++++|+.++ ..+.+-...+|
T Consensus 135 ~~~~t~~~~~~e~~~~~a~~~~~~G~~~iKlKvg~~---------------~~~~d~~~v~avR~~~~~~~L~vDaN~~w 199 (389)
T 3s5s_A 135 TTDITITTGSPERAEEAARRAAAMGFRALKVKVGGR---------------LAASDPARIEAIHAAAPGASLILDGNGGL 199 (389)
T ss_dssp ECCEEECSSCSHHHHHHHHHHHHHTCCEEEEECCGG---------------GTTTHHHHHHHHHHHCTTCEEEEECTTCS
T ss_pred EEEeeecCCCHHHHHHHHHHHHHcCCCeEEEEecCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 344556667888888777755 46999999986632 12223446777777763 34445544579
Q ss_pred ChHHHHHHHHHH--HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 181 NEADTIALCKRL--EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 181 ~~~~~~~~a~~l--~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+.+++.++++.+ ++.++.+| +++. .+.+++..+++++.+++||.+-=.+.+..++.++++.
T Consensus 200 ~~~~A~~~~~~L~~~~~~i~~i-------EeP~-~~~d~~~~~~l~~~~~iPIa~dEs~~~~~~~~~~i~~ 262 (389)
T 3s5s_A 200 TAGEALALVAHARRLGADVALL-------EQPV-PRDDWDGMKEVTRRAGVDVAADESAASAEDVLRVAAE 262 (389)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEE-------ECCS-CTTCHHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhCCCCeEEE-------ECCC-CcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHc
Confidence 999999999999 44444443 2222 2457899999999999999988789999999998875
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.021 Score=51.22 Aligned_cols=122 Identities=19% Similarity=0.148 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~ 188 (306)
|.+.+.+..+.+ +.|+|+|=++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+++++
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~Gtt----------GE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~l 89 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNGTT----------AESPTLTTDEKELILKTVIDLVDKRVPVIAGTGT-NDTEKSIQA 89 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGG----------GTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccc----------cccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCc-ccHHHHHHH
Confidence 556777777755 4599999886432 2222222333345555555444 4789887753 567889999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
++.+++.|+|++.+.... |..|. -.++.++|.+++++||+.= |---+++.+.++.+
T Consensus 90 a~~a~~~Gadavlv~~P~----y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 154 (292)
T 3daq_A 90 SIQAKALGADAIMLITPY----YNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQ 154 (292)
T ss_dssp HHHHHHHTCSEEEEECCC----SSCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHHcCCCEEEECCCC----CCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc
Confidence 999999999999886432 22221 2567788888889998753 33446777766654
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.017 Score=53.86 Aligned_cols=121 Identities=14% Similarity=0.218 Sum_probs=87.9
Q ss_pred ceEEEec-CCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccC
Q psy4398 103 KIILQIG-TADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVF 179 (306)
Q Consensus 103 p~ivql~-g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g 179 (306)
|+-..++ +.+++++.+.++.+ ++||..+-+.++ |. .+ .+.++++|+.+ ++.+.+-...+
T Consensus 151 ~~~~~~g~~~~~e~~~~~a~~~~~~G~~~~KiKvg-~~-------------~d----~~~v~avr~a~~~~~l~vDaN~~ 212 (393)
T 1wuf_A 151 KVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIA-PN-------------KD----IQFVEAVRKSFPKLSLMADANSA 212 (393)
T ss_dssp EBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECB-TT-------------BS----HHHHHHHHTTCTTSEEEEECTTC
T ss_pred eeeEEeCCCCCHHHHHHHHHHHHHHhhHhheeccC-hH-------------HH----HHHHHHHHHHcCCCEEEEECCCC
Confidence 3434444 34688887776655 459999999754 11 12 35578888876 34455555557
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
|+.+++ ++++.+++.++.+|- ++. .+.+++..+++++.+++||.+--.+.+..+++++++.+
T Consensus 213 ~~~~~a-~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~ 274 (393)
T 1wuf_A 213 YNREDF-LLLKELDQYDLEMIE-------QPF-GTKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIG 274 (393)
T ss_dssp CCGGGH-HHHHTTGGGTCSEEE-------CCS-CSSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHT
T ss_pred CCHHHH-HHHHHHHhCCCeEEE-------CCC-CCcCHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhC
Confidence 888888 999999999998875 222 34578889999999999999988899999999988753
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.11 Score=46.03 Aligned_cols=161 Identities=16% Similarity=0.207 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec-C--CCHHHH
Q psy4398 40 RMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG-T--ADPERA 116 (306)
Q Consensus 40 ~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~-g--~~~~~~ 116 (306)
+.-|.....++.+.|+..+.+....... ..+.+.. ..++-.+.+. +-+.+.+.. ...|+++-+- | .++++.
T Consensus 35 tayDa~sA~l~e~aG~d~ilvGdSl~~~-~lG~~dt-~~vtldem~~--h~~aV~r~~--~~~~vvaD~pfgsY~s~~~a 108 (275)
T 3vav_A 35 TCYDASFAALLDRANVDVQLIGDSLGNV-LQGQTTT-LPVTLDDIAY--HTACVARAQ--PRALIVADLPFGTYGTPADA 108 (275)
T ss_dssp ECCSHHHHHHHHHTTCSEEEECTTHHHH-TTCCSSS-TTCCHHHHHH--HHHHHHHTC--CSSEEEEECCTTSCSSHHHH
T ss_pred eCcCHHHHHHHHHcCCCEEEECcHHHHH-HcCCCCC-CccCHHHHHH--HHHHHHhcC--CCCCEEEecCCCCCCCHHHH
Confidence 3467888888889999988776321110 0000000 0000000000 000111111 1357888773 2 477777
Q ss_pred HHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--------------CCC
Q psy4398 117 LEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--------------FHN 181 (306)
Q Consensus 117 ~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--------------g~~ 181 (306)
.+.+.++ ++|+++|.|--+ ....+.++++.+ .++|+.--+.. |-+
T Consensus 109 ~~~a~rl~kaGa~aVklEdg-------------------~~~~~~i~~l~~-~GIpv~gHlgltPq~~~~~gg~~vqgrt 168 (275)
T 3vav_A 109 FASAVKLMRAGAQMVKFEGG-------------------EWLAETVRFLVE-RAVPVCAHVGLTPQSVHAFGGFKVQGKT 168 (275)
T ss_dssp HHHHHHHHHTTCSEEEEECC-------------------GGGHHHHHHHHH-TTCCEEEEEESCGGGHHHHC---CCCCS
T ss_pred HHHHHHHHHcCCCEEEECCc-------------------hhHHHHHHHHHH-CCCCEEEecCCCceEEeccCCeEEEcCC
Confidence 6666554 569999999411 123556666665 37787744332 122
Q ss_pred ---hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 182 ---EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 182 ---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
.+++++=|++++++||+.|.+-+. | . +.+++|.+.+++|+|+-|.
T Consensus 169 ~~~a~~~i~rA~a~~eAGA~~ivlE~v--------p-~-~~a~~It~~l~iP~igIGa 216 (275)
T 3vav_A 169 EAGAAQLLRDARAVEEAGAQLIVLEAV--------P-T-LVAAEVTRELSIPTIGIGA 216 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEESC--------C-H-HHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCC--------C-H-HHHHHHHHhCCCCEEEEcc
Confidence 245778889999999999998754 2 3 4789999999999998875
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.023 Score=51.59 Aligned_cols=123 Identities=11% Similarity=0.077 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~ 188 (306)
|.+.+.+..+.+. .|.|+|=++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+++++
T Consensus 30 D~~~l~~lv~~li~~Gv~gl~v~GtT----------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~l 98 (318)
T 3qfe_A 30 DLASQERYYAYLARSGLTGLVILGTN----------AEAFLLTREERAQLIATARKAVGPDFPIMAGVGA-HSTRQVLEH 98 (318)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEESSGG----------GTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCC-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccc----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHHH
Confidence 5577777777654 599999986332 2222223344455666665554 4789887763 577889999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCC----cHHHHHHHHhhCCCcEEEe------cCC-CCHHHHHHHHH
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRN----RIEMIRTLTQHLKIPVIAN------GGS-KEIVDYGGVFS 248 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~----~~~~v~~i~~~~~ipvia~------GGI-~s~~~~~~~l~ 248 (306)
++.+++.|+|++.+....- +..|. -.++.+.|.+++++||+.= .|+ -+++.+.++.+
T Consensus 99 a~~a~~~Gadavlv~~P~y---~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~La~ 166 (318)
T 3qfe_A 99 INDASVAGANYVLVLPPAY---FGKATTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIAR 166 (318)
T ss_dssp HHHHHHHTCSEEEECCCCC------CCCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcc---cCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHHHh
Confidence 9999999999999854321 11222 2567788999999997652 244 46777777765
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.017 Score=53.75 Aligned_cols=178 Identities=14% Similarity=0.111 Sum_probs=106.1
Q ss_pred ccccccccccC--CceEEccCCCCCCHH----HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCC--Cc
Q psy4398 20 ANANQANINYS--NKIILAPMVRMNTLP----FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD--GS 91 (306)
Q Consensus 20 ~~~~~~~l~l~--n~i~lAPm~~~t~~~----~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~ 91 (306)
..++++++.+- +|++++..+++.+.. +...+++.|+.++.-....+..... .|...+. .+
T Consensus 129 t~i~i~~~~iG~~~~~~Iigpcsves~e~a~~~a~~~k~aGa~~vk~q~fkprts~~------------~f~gl~~egl~ 196 (385)
T 3nvt_A 129 TIVTVKGLPIGNGEPVFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAFKPRTSPY------------DFQGLGLEGLK 196 (385)
T ss_dssp CCEEETTEEETSSSCEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTT------------SCCCCTHHHHH
T ss_pred cEEEECCEEECCCCeEEEEEeCCcCCHHHHHHHHHHHHHcCCCeEEcccccCCCChH------------hhcCCCHHHHH
Confidence 45667776653 466777767777754 2233567898877666543221110 0100000 12
Q ss_pred eeeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+.+.+.+.|.|++..++.... . ..+.+.+|.+.| |+..+++..+ ++++. ..+.|
T Consensus 197 ~L~~~~~~~Gl~~~te~~d~~~--~----~~l~~~vd~lkI--------------gs~~~~n~~L----L~~~a-~~gkP 251 (385)
T 3nvt_A 197 ILKRVSDEYGLGVISEIVTPAD--I----EVALDYVDVIQI--------------GARNMQNFEL----LKAAG-RVDKP 251 (385)
T ss_dssp HHHHHHHHHTCEEEEECCSGGG--H----HHHTTTCSEEEE--------------CGGGTTCHHH----HHHHH-TSSSC
T ss_pred HHHHHHHHcCCEEEEecCCHHH--H----HHHHhhCCEEEE--------------CcccccCHHH----HHHHH-ccCCc
Confidence 2333444456777766643322 1 122223677777 3444556544 44443 46999
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEE-EcccCCC-CC-CCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGIIAIG-VHGRTKA-ER-PRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~d~i~-v~~~~~~-~~-~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
|.+|-....+.+++...++.+.+.|..-|+ ++..+.. +. .....++..+..+++.+++||+.-
T Consensus 252 Vilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~lpV~~D 317 (385)
T 3nvt_A 252 ILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVD 317 (385)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhcCCCEEEc
Confidence 999999877889999999999999985454 5653332 22 223358888999999999999653
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.019 Score=51.69 Aligned_cols=123 Identities=11% Similarity=0.153 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|.|+|-++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 29 iD~~~l~~lv~~li~~Gv~Gl~v~GtT----------GE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~-~~t~~ai~ 97 (303)
T 2wkj_A 29 LDKASLRRLVQFNIQQGIDGLYVGGST----------GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGC-VSTAESQQ 97 (303)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTT----------TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECeec----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHH
Confidence 4567777777755 4599999996332 2222223344455566555544 4788887763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCC-CcEEE-e----cCC-CCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLK-IPVIA-N----GGS-KEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~-ipvia-~----GGI-~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+... .|..|. -.++.++|.++++ +|||. | .|+ -+++.+.++.+
T Consensus 98 la~~A~~~Gadavlv~~P----~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l~~~~~~~La~ 164 (303)
T 2wkj_A 98 LAASAKRYGFDAVSAVTP----FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVT 164 (303)
T ss_dssp HHHHHHHHTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred HHHHHHhCCCCEEEecCC----CCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 999999999999987643 232232 2456788888888 99776 3 354 46777777654
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.035 Score=49.94 Aligned_cols=124 Identities=10% Similarity=0.128 Sum_probs=81.1
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
.+.|+++++-|.. +|..+.+.++.||.-|.+..|. -.++++.+...++++...+ .++.|-.-+..
T Consensus 73 ~~VPValHLDHg~--~~e~~~~ai~~GFtSVMiDgS~-----------~p~eeNi~~Tk~vv~~ah~-~gvsVEaELG~i 138 (307)
T 3n9r_A 73 PHIPVALHLDHGT--TFESCEKAVKAGFTSVMIDASH-----------HAFEENLELTSKVVKMAHN-AGVSVEAELGRL 138 (307)
T ss_dssp TTSCEEEEEEEEC--SHHHHHHHHHHTCSEEEECCTT-----------SCHHHHHHHHHHHHHHHHH-TTCEEEEEESCC
T ss_pred CCCcEEEECCCCC--CHHHHHHHHHhCCCcEEEECCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEeeee
Confidence 4578888886542 1333333445689998886553 2345677788888877765 36666666654
Q ss_pred CCC------------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCC----CCCcHHHHHHHHhhCCCcEEEecCC
Q psy4398 179 FHN------------EADTIALCKRLEACGIIAIGVHGRTKAERPR----HRNRIEMIRTLTQHLKIPVIANGGS 237 (306)
Q Consensus 179 g~~------------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~----~p~~~~~v~~i~~~~~ipvia~GGI 237 (306)
|.. ..+..+..+-+++.|+|.|-+.=.+..+.|. ...+++.+++|++..++|++..||-
T Consensus 139 gG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~~~PLVlHGgS 213 (307)
T 3n9r_A 139 MGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGAS 213 (307)
T ss_dssp CCC----------CCSCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHHCSCEEESSCC
T ss_pred ccccCCcccccccccCCCHHHHHHHHHHHCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcCCCCeEEeCCC
Confidence 110 1224454455567899999876555444443 2358899999988779999999986
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.042 Score=49.70 Aligned_cols=125 Identities=12% Similarity=0.009 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~ 188 (306)
-|.+.+.+..+.+ +.|+|+|=++.+. |-...-..+.-.++++.+.+.+ .+||++-+.. .+..+++++
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gl~v~GtT----------GE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~-~~t~~ai~l 94 (313)
T 3dz1_A 26 IDDVSIDRLTDFYAEVGCEGVTVLGIL----------GEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSA-PGFAAMRRL 94 (313)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESTGG----------GTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCC-SSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEeCccC----------cChhhCCHHHHHHHHHHHHHHcCCCcEEEecCC-CCHHHHHHH
Confidence 4667788877765 4599999885332 2222223344455666665554 5788887653 577889999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--CcEEE------ecCCCCHHHHHHHHH
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK--IPVIA------NGGSKEIVDYGGVFS 248 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~--ipvia------~GGI~s~~~~~~~l~ 248 (306)
++.+++.|+|++.+.... .......-+++.+.|.++++ +||+. .|---+++.+.++.+
T Consensus 95 a~~A~~~Gadavlv~~P~--~~~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~ 160 (313)
T 3dz1_A 95 ARLSMDAGAAGVMIAPPP--SLRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVM 160 (313)
T ss_dssp HHHHHHHTCSEEEECCCT--TCCSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCC--CCCCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHH
Confidence 999999999999985432 11111113567788999988 99876 344457787777764
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.027 Score=50.69 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~g~~~~~~~ 186 (306)
-|.+.+.+..+.+ +.|.|+|-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+++
T Consensus 25 iD~~~l~~lv~~li~~Gv~gl~v~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~-~~t~~ai 93 (301)
T 3m5v_A 25 VDEQSYARLIKRQIENGIDAVVPVGTT----------GESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGS-NATHEAV 93 (301)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEECSSTT----------TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCC-SSHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCC-CCHHHHH
Confidence 4667788877765 4599999886432 1112223333355555555544 3688887653 4678899
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
++++.+++.|+|++.+.... |..|. -.++.++|.+++++||+.= |---+++.+.++.+
T Consensus 94 ~la~~a~~~Gadavlv~~P~----y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 160 (301)
T 3m5v_A 94 GLAKFAKEHGADGILSVAPY----YNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFR 160 (301)
T ss_dssp HHHHHHHHTTCSEEEEECCC----SSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCC----CCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHh
Confidence 99999999999999886432 22222 2567788888899998743 44456777776654
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0067 Score=55.30 Aligned_cols=149 Identities=12% Similarity=0.072 Sum_probs=85.5
Q ss_pred HHHh-cCCCEEEEccCC-CccccccCCcccccc-CChHHHHHHHHHHHhcccccEEEEe--cc-C--C--C-------hH
Q psy4398 121 KKVE-HDVAAIDINMGC-PKQFSLTGGMGAALL-STPDIACNILTTLISNLSIPVSCKI--RV-F--H--N-------EA 183 (306)
Q Consensus 121 ~~~~-~g~d~veln~gc-P~~~~~~~~~G~~l~-~~~~~~~eiv~~v~~~~~~pv~vKi--r~-g--~--~-------~~ 183 (306)
+.+. .|+|+|-+++-. |. +. ..+. ++.+.+.++.++.++ .++|+.+-+ +. + . + ++
T Consensus 117 e~a~~~GADAVk~lv~~g~d-----~~--~e~~~~q~~~l~rv~~ec~~-~GiPlllEil~y~~~~~~~~~~~~a~~~p~ 188 (332)
T 3iv3_A 117 KRLKEAGADAVKFLLYYDVD-----GD--PQVNVQKQAYIERIGSECQA-EDIPFFLEILTYDETISNNSSVEFAKVKVH 188 (332)
T ss_dssp HHHHHTTCSEEEEEEEECTT-----SC--HHHHHHHHHHHHHHHHHHHH-HTCCEEEEEEECBTTBSCTTSHHHHTTHHH
T ss_pred HHHHHcCCCEEEEEEEcCCC-----ch--HHHHHHHHHHHHHHHHHHHH-cCCceEEEEeccCCCCCCCcchhhhccCHH
Confidence 4444 599998886532 11 00 0000 122344455444433 389988854 22 1 1 1 22
Q ss_pred HHHHHHHHH--HHcCCcEEEEccc-CC---CCC------CCCCCcHHHHHHHHhhCCCcEE-EecCCCCHHHHHHHHHh-
Q psy4398 184 DTIALCKRL--EACGIIAIGVHGR-TK---AER------PRHRNRIEMIRTLTQHLKIPVI-ANGGSKEIVDYGGVFSL- 249 (306)
Q Consensus 184 ~~~~~a~~l--~~~G~d~i~v~~~-~~---~~~------~~~p~~~~~v~~i~~~~~ipvi-a~GGI~s~~~~~~~l~~- 249 (306)
.....++.+ .+.|+|.+-+.-. .. ++. |......+.++++.+.+.+|+| .+||+ +.++..+.++.
T Consensus 189 ~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~-~~~~fl~~v~~A 267 (332)
T 3iv3_A 189 KVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGV-SAELFQETLVFA 267 (332)
T ss_dssp HHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCC-CHHHHHHHHHHH
Confidence 267788888 6779999987411 10 111 1111123456777788899965 79997 45555554432
Q ss_pred --------hhhhccccCCCC--Cch---HHHHHHHHHhcCCC
Q psy4398 250 --------NCAFLRNHYPVE--KLP---KTILYAHCKYKRFE 278 (306)
Q Consensus 250 --------~v~vGrall~~p--~~~---~~~l~~~~~~~g~~ 278 (306)
|+.+||+++++. .+. +...++||+..|.+
T Consensus 268 ~~aGa~f~Gv~~GRnvwq~~v~~~~~~~~~~~~~~l~~~g~~ 309 (332)
T 3iv3_A 268 HKAGAKFNGVLCGRATWAGSVQVYMEEGKEAARQWLRTSGLQ 309 (332)
T ss_dssp HHHTCCCCEEEECHHHHTTHHHHHHHHCHHHHHHHHTTHHHH
T ss_pred HHcCCCcceEEeeHHHHHhhhhhhccccHHHHHHHHHHHhHH
Confidence 559999999885 333 23889999988843
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.018 Score=51.61 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|.|+|-++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~ 87 (292)
T 2ojp_A 19 VCRASLKKLIDYHVASGTSAIVSVGTT----------GESATLNHDEHADVVMMTLDLADGRIPVIAGTGA-NATAEAIS 87 (292)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSTT----------TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-ccHHHHHH
Confidence 45677777777654 599999986432 1222223334455555555544 4788888763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+.... |..|. -.++.++|.+++++||+. | .|+ -+++.+.++.+
T Consensus 88 la~~a~~~Gadavlv~~P~----y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 153 (292)
T 2ojp_A 88 LTQRFNDSGIVGCLTVTPY----YNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAK 153 (292)
T ss_dssp HHHHTTTSSCSEEEEECCC----SSCCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEECCCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHHHc
Confidence 9999999999999876432 32232 245678888888999776 3 243 46777777654
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.043 Score=49.12 Aligned_cols=123 Identities=11% Similarity=0.136 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHH-Hh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAKK-VE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~-~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
-|.+.+.+..+. ++ .|.|+|-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+++
T Consensus 21 iD~~~l~~lv~~li~~~Gv~gl~~~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai 89 (293)
T 1f6k_A 21 INEKGLRQIIRHNIDKMKVDGLYVGGST----------GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKEAV 89 (293)
T ss_dssp BCHHHHHHHHHHHHHTSCCSEEEESSGG----------GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-SCHHHHH
T ss_pred cCHHHHHHHHHHHHhhCCCcEEEeCccc----------cchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCC-CCHHHHH
Confidence 456777777774 46 699999985331 2222223344455666665544 4788887763 4678899
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~~l~ 248 (306)
++++.+++.|+|++.+... .|..|. -.++.++|.+++++||+. | .|+ -+++.+.++.+
T Consensus 90 ~la~~a~~~Gadavlv~~P----~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 156 (293)
T 1f6k_A 90 ELGKYATELGYDCLSAVTP----FYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYK 156 (293)
T ss_dssp HHHHHHHHHTCSEEEEECC----CSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred HHHHHHHhcCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHhc
Confidence 9999999999999987643 232222 245678888888999766 3 344 47777777654
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0023 Score=54.54 Aligned_cols=69 Identities=12% Similarity=0.011 Sum_probs=50.3
Q ss_pred HHHHHHcCCcEEEEcccCC---CCCCCCCCcHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHh---hhhhccccCC
Q psy4398 189 CKRLEACGIIAIGVHGRTK---AERPRHRNRIEMIRTLTQH--LKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYP 259 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~---~~~~~~p~~~~~v~~i~~~--~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~ 259 (306)
+..++ .|+|+|.+..... ...+..+..++.++++++. .++||++.|||+ ++++.++++. ++.++++++.
T Consensus 101 ~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVav~s~i~~ 177 (210)
T 3ceu_A 101 VKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAVVLGDLWN 177 (210)
T ss_dssp HHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEEEhHHhHc
Confidence 34445 8999999765421 1112235688999999987 689999999998 8889888886 4589998865
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.041 Score=46.56 Aligned_cols=140 Identities=21% Similarity=0.205 Sum_probs=85.1
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc--ccccEEEEeccCCC
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN--LSIPVSCKIRVFHN 181 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~--~~~pv~vKir~g~~ 181 (306)
+++.+--.+.++..+.++.+......++++.+.= -.+| + ++++++|+. ..+++++|+- .-
T Consensus 2 lila~D~~~l~~~~~~~~~~~~~~~~~kv~~~~f------~~~G------~----~~i~~lr~~~~~~v~~D~kl~--DI 63 (208)
T 2czd_A 2 IVLALDVYEGERAIKIAKSVKDYISMIKVNWPLI------LGSG------V----DIIRRLKEETGVEIIADLKLA--DI 63 (208)
T ss_dssp EEEECCCCSHHHHHHHHHHHGGGCSEEEEEHHHH------HHHC------T----THHHHHHHHHCCEEEEEEEEC--SC
T ss_pred eEEEecCCCHHHHHHHHHHhcccccEEEecHHHH------HhhC------H----HHHHHHHHcCCCEEEEEeeeC--ch
Confidence 3444444455555555554444567788864320 0122 2 345566665 5678888887 33
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCC--------C----------------CC----------------C----CCCCcH
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTK--------A----------------ER----------------P----RHRNRI 217 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~--------~----------------~~----------------~----~~p~~~ 217 (306)
..+....++.+.++|+|.+++|.-.. + .. . ..+...
T Consensus 64 ~~t~~~~v~~~~~~Gad~vtvh~~~g~~~i~~~~~~~gv~vl~~t~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~~~ 143 (208)
T 2czd_A 64 PNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTRP 143 (208)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCSST
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccCCHHHHHHHHHhCCcEEEEecCCcchhhHHHHHHHHHHHHHHHhCCcEEEECCCCh
Confidence 34566778888899999999985320 0 00 0 012234
Q ss_pred HHHHHHHhhCC-CcEEEecCCCCH-HHHHHHHHhhh---hhccccCCCC
Q psy4398 218 EMIRTLTQHLK-IPVIANGGSKEI-VDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 218 ~~v~~i~~~~~-ipvia~GGI~s~-~~~~~~l~~~v---~vGrall~~p 261 (306)
+.++++++..+ -+++..|||+.- .+..++++.|+ .+||+++..+
T Consensus 144 ~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a~ 192 (208)
T 2czd_A 144 ERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAP 192 (208)
T ss_dssp HHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTSS
T ss_pred HHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhcCC
Confidence 56677887775 367899999852 26777777654 8999998754
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.14 Score=46.24 Aligned_cols=186 Identities=11% Similarity=0.059 Sum_probs=102.5
Q ss_pred CceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec-
Q psy4398 31 NKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG- 109 (306)
Q Consensus 31 n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~- 109 (306)
+..+..|.+ -|.....++.+.|+..+++...+..-...+.+. .+.++-.+.+.- -+.+.+.++ +.|+++-+=
T Consensus 38 ~~~i~~~~a--yD~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD-~~~vt~~em~~~--~~~I~r~~~--~~PviaD~d~ 110 (318)
T 1zlp_A 38 HGSVLMPGV--QDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPD-FGLLTTTEVVEA--TRRITAAAP--NLCVVVDGDT 110 (318)
T ss_dssp SSSEEEEEE--CSHHHHHHHHHTTCSEEEECHHHHHHHHHCCCS-SSCSCHHHHHHH--HHHHHHHSS--SSEEEEECTT
T ss_pred CCcEEEecC--CCHHHHHHHHHcCCCEEEECcHHHhhHhcCCCC-CCCCCHHHHHHH--HHHHHhhcc--CCCEEEeCCC
Confidence 334444443 566666777789998888764321100111100 011100000000 011222221 578988873
Q ss_pred C-CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCC----Ch
Q psy4398 110 T-ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFH----NE 182 (306)
Q Consensus 110 g-~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~----~~ 182 (306)
| .++++..+.++++. .|+++|.|.=+...+ +....|+.-+-..+...+-|++++++. ..++.+--|..- ..
T Consensus 111 Gyg~~~~v~~tv~~l~~aGaagv~iED~~~~k--~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl 188 (318)
T 1zlp_A 111 GGGGPLNVQRFIRELISAGAKGVFLEDQVWPK--KCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGL 188 (318)
T ss_dssp CSSSHHHHHHHHHHHHHTTCCEEEEECBCSSC--CCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEECCCCCCc--cccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCH
Confidence 2 27888888877665 599999997553211 112222222233344444455555443 333444444211 12
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
+++++=++.++++|+|.|.+.+. .+.+.++++.+.+++|+.+|
T Consensus 189 ~~ai~Ra~Ay~eAGAd~i~~e~~---------~~~e~~~~i~~~l~~P~lan 231 (318)
T 1zlp_A 189 EEGIRRANLYKEAGADATFVEAP---------ANVDELKEVSAKTKGLRIAN 231 (318)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCC---------CSHHHHHHHHHHSCSEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEcCC---------CCHHHHHHHHHhcCCCEEEE
Confidence 56888889999999999999763 36689999999999999765
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.026 Score=51.14 Aligned_cols=137 Identities=14% Similarity=0.147 Sum_probs=89.1
Q ss_pred CCCceEEEecCC-CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 100 EKNKIILQIGTA-DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 100 ~~~p~ivql~g~-~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
.+.|+++.+-|. +.+. +.+.++.||.-|.+..|. ..++++.+...++++...+ .++.|-.-+..
T Consensus 74 ~~VPValHlDHg~~~e~---i~~ai~~GFtSVMiDgS~-----------~p~eENi~~Tk~vv~~ah~-~gvsVEaELG~ 138 (323)
T 2isw_A 74 PDIPICIHLDHGDTLES---VKMAIDLGFSSVMIDASH-----------HPFDENVRITKEVVAYAHA-RSVSVEAELGT 138 (323)
T ss_dssp TTSCEEEEEEEECSHHH---HHHHHHTTCSEEEECCTT-----------SCHHHHHHHHHHHHHHHHT-TTCEEEEEESC
T ss_pred CCCcEEEECCCCCCHHH---HHHHHHcCCCeEEecCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEeCC
Confidence 356888887654 3333 333445688888886442 2345677788888877654 46666666654
Q ss_pred -CC-C--------hHHHHHHHHHHHHcCCcEEEEcccCCCCCCC--C--C--CcHHHHHHHHhhCCCcEEEecCC-----
Q psy4398 179 -FH-N--------EADTIALCKRLEACGIIAIGVHGRTKAERPR--H--R--NRIEMIRTLTQHLKIPVIANGGS----- 237 (306)
Q Consensus 179 -g~-~--------~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~--~--p--~~~~~v~~i~~~~~ipvia~GGI----- 237 (306)
|. . ..+..+..+.+++.|+|.|-+.=.+..+.|. + . .+++.+++|++.+++|++..||-
T Consensus 139 vgg~Ed~v~~~~~yTdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~~vpLVlHGgSsvp~~ 218 (323)
T 2isw_A 139 LGGIEEDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTGIPLVMHGSSSVPKD 218 (323)
T ss_dssp C----------CCCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHHCSCEEECSCCCCCHH
T ss_pred ccCCccCcccccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCcccccCHHHHHHHHHHhCCCeEEECCCCCCHH
Confidence 11 1 1234555556667899999886555545444 2 2 56899999999999999999965
Q ss_pred ----------------C-CHHHHHHHHHhhh
Q psy4398 238 ----------------K-EIVDYGGVFSLNC 251 (306)
Q Consensus 238 ----------------~-s~~~~~~~l~~~v 251 (306)
. +.++.+++++.|+
T Consensus 219 ~~~~~~~~gg~~~~~~Gvp~e~i~~ai~~GV 249 (323)
T 2isw_A 219 VKDMINKYGGKMPDAVGVPIESIVHAIGEGV 249 (323)
T ss_dssp HHHHHHHTTCCCTTCBCCCHHHHHHHHHTTE
T ss_pred HHHHHHHhccccccCCCCCHHHHHHHHHCCC
Confidence 2 3566777777765
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.017 Score=51.67 Aligned_cols=122 Identities=19% Similarity=0.179 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|.|+|-++-+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~-~~t~~ai~ 87 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCGTT----------GEATTMTETERKETIKFVIDKVNKRIPVIAGTGS-NNTAASIA 87 (291)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSGG----------GTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCc-ccHHHHHH
Confidence 4556777777755 4599999986332 2222223334455555555544 4788888773 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEE-e-----cCCCCHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIA-N-----GGSKEIVDYGGVF 247 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia-~-----GGI~s~~~~~~~l 247 (306)
+++.+++.|+|++.+.... |..|. -+++.++|.+++++||+. | |---+++.+.++.
T Consensus 88 la~~a~~~Gadavlv~~P~----y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 152 (291)
T 3a5f_A 88 MSKWAESIGVDGLLVITPY----YNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELC 152 (291)
T ss_dssp HHHHHHHTTCSEEEEECCC----SSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHHHHHT
T ss_pred HHHHHHhcCCCEEEEcCCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHH
Confidence 9999999999999876432 22221 133445666667777655 2 2223566655554
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.042 Score=49.30 Aligned_cols=122 Identities=12% Similarity=0.151 Sum_probs=77.0
Q ss_pred CCceEEEec-C-CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCc-cccccCChHHHHHHHHHHHhc-ccccEEEE
Q psy4398 101 KNKIILQIG-T-ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGM-GAALLSTPDIACNILTTLISN-LSIPVSCK 175 (306)
Q Consensus 101 ~~p~ivql~-g-~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~-G~~l~~~~~~~~eiv~~v~~~-~~~pv~vK 175 (306)
+.|+++-+- | .++++..+.++.+. .|+.+|.|.=..-.+ +.+.. |..+....+.+..| ++.+++ .+.++.+-
T Consensus 83 ~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k--~cGh~~gk~l~~~~e~~~ri-~Aa~~A~~~~~~~I~ 159 (298)
T 3eoo_A 83 NLPLLVDIDTGWGGAFNIARTIRSFIKAGVGAVHLEDQVGQK--RCGHRPGKECVPAGEMVDRI-KAAVDARTDETFVIM 159 (298)
T ss_dssp CSCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEEECBCCCC--CTTCCCCCCBCCHHHHHHHH-HHHHHHCSSTTSEEE
T ss_pred CCeEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCc--ccCCCCCCeecCHHHHHHHH-HHHHHhccCCCeEEE
Confidence 468888762 2 37888888888765 599999996442111 11111 22233333334443 444333 24455554
Q ss_pred eccC----CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 176 IRVF----HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 176 ir~g----~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
-|.. ...+++++=++++.++|+|.|-+++. .+.+.++++.+++++|+.+|
T Consensus 160 ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~~~---------~~~ee~~~~~~~~~~Pl~~n 213 (298)
T 3eoo_A 160 ARTDAAAAEGIDAAIERAIAYVEAGADMIFPEAM---------KTLDDYRRFKEAVKVPILAN 213 (298)
T ss_dssp EEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC---------CSHHHHHHHHHHHCSCBEEE
T ss_pred EeehhhhhcCHHHHHHHHHhhHhcCCCEEEeCCC---------CCHHHHHHHHHHcCCCeEEE
Confidence 4431 12456778888899999999998764 25688999999999999886
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.049 Score=48.54 Aligned_cols=119 Identities=19% Similarity=0.149 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
-|.+.+.+..+.+ +.|.|+|-++-+. |-...-..+.-.++++.+.+.++. |.+-+.. .+..++++++
T Consensus 16 iD~~~l~~lv~~li~~Gv~gl~v~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg~-~~t~~ai~la 83 (286)
T 2r91_A 16 LDPELFANHVKNITSKGVDVVFVAGTT----------GLGPALSLQEKMELTDAATSAARR-VIVQVAS-LNADEAIALA 83 (286)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEETSTT----------TTGGGSCHHHHHHHHHHHHHHCSS-EEEECCC-SSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCC-EEEeeCC-CCHHHHHHHH
Confidence 3566777777755 4599999986432 222223444556777777776644 6666652 4678899999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCC-CC---cHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHH
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRH-RN---RIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGG 245 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~-p~---~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~ 245 (306)
+.++++|+|++.+.... |.. |. -.++.++|.+++++||+. | .|+ -+++.+.+
T Consensus 84 ~~A~~~Gadavlv~~P~----y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~ 145 (286)
T 2r91_A 84 KYAESRGAEAVASLPPY----YFPRLSERQIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKE 145 (286)
T ss_dssp HHHHHTTCSEEEECCSC----SSTTCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSSCCCHHHHHH
T ss_pred HHHHhcCCCEEEEcCCc----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeChhhcCCCCCHHHHHh
Confidence 99999999999986432 322 22 246678899999999876 2 243 36666655
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.046 Score=48.81 Aligned_cols=120 Identities=15% Similarity=0.077 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
-|.+.+.+..+.+ +.|.|+|-++.+. |-...-..+.-.++++.+.+.++. |.+-+.. .+..++++++
T Consensus 17 iD~~~l~~lv~~li~~Gv~gl~v~GtT----------GE~~~Ls~eEr~~v~~~~~~~~~g-ViaGvg~-~~t~~ai~la 84 (288)
T 2nuw_A 17 VNVDALKTHAKNLLEKGIDAIFVNGTT----------GLGPALSKDEKRQNLNALYDVTHK-LIFQVGS-LNLNDVMELV 84 (288)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEETSTT----------TTGGGSCHHHHHHHHHHHTTTCSC-EEEECCC-SCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCC-eEEeeCC-CCHHHHHHHH
Confidence 4567777777755 4599999986432 222233455557888888877754 6666552 4678899999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCC-CC---cHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHHH
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRH-RN---RIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGGV 246 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~-p~---~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~~ 246 (306)
+.+++.|+|++.+.... |.. |. -+++.++|.+++++||+. | .|+ -+++.+.++
T Consensus 85 ~~A~~~Gadavlv~~P~----y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 147 (288)
T 2nuw_A 85 KFSNEMDILGVSSHSPY----YFPRLPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSILKSL 147 (288)
T ss_dssp HHHHTSCCSEEEECCCC----SSCSCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHTTT
T ss_pred HHHHhcCCCEEEEcCCc----CCCCCCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCHHHHhcc
Confidence 99999999999886432 322 22 256778899999999876 3 243 355655544
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.017 Score=52.06 Aligned_cols=122 Identities=13% Similarity=0.079 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|.|+|-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 22 iD~~~l~~lv~~li~~Gv~gl~v~Gtt----------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~ 90 (300)
T 3eb2_A 22 VRADVMGRLCDDLIQAGVHGLTPLGST----------GEFAYLGTAQREAVVRATIEAAQRRVPVVAGVAS-TSVADAVA 90 (300)
T ss_dssp BCHHHHHHHHHHHHHTTCSCBBTTSGG----------GTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEE-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHH
Confidence 4567777777765 4599999775321 2222223333355555555544 4789887763 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVF 247 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l 247 (306)
+++.+++.|+|++.+.... |..|. -.++.++|.+++++||+.= |---+++.+.++.
T Consensus 91 la~~a~~~Gadavlv~~P~----y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 155 (300)
T 3eb2_A 91 QAKLYEKLGADGILAILEA----YFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLA 155 (300)
T ss_dssp HHHHHHHHTCSEEEEEECC----SSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCC----CCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHH
Confidence 9999999999999875432 22221 2456788888888887642 2223566665553
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.092 Score=46.85 Aligned_cols=188 Identities=13% Similarity=0.144 Sum_probs=105.3
Q ss_pred ccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceE
Q psy4398 26 NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKII 105 (306)
Q Consensus 26 ~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i 105 (306)
.+.-++..+..|. .-|.....++.+.|+..+++......-...+.+. .+.++-.+... .........+.|++
T Consensus 15 ~l~~~~~~i~~~~--a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD-~~~vt~~em~~-----~~~~I~r~~~~Pvi 86 (287)
T 3b8i_A 15 ALLDSSRCYHTAS--VFDPMSARIAADLGFECGILGGSVASLQVLAAPD-FALITLSEFVE-----QATRIGRVARLPVI 86 (287)
T ss_dssp HHHHSSCCEECEE--CCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCS-SSCSCHHHHHH-----HHHHHHTTCSSCEE
T ss_pred HHHhCCCcEEEec--CCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCC-CCCCCHHHHHH-----HHHHHHhcCCCCEE
Confidence 3333344444444 4567777777789997777653311100011000 01110000000 00011122356888
Q ss_pred EEec-C-CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-c--ccEEEEecc-
Q psy4398 106 LQIG-T-ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-S--IPVSCKIRV- 178 (306)
Q Consensus 106 vql~-g-~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~--~pv~vKir~- 178 (306)
+-+= | .++++..+.++++. .|+++|.|.=+... +.+ +...+. .-..+...+-|++++++- + .-|..|.-.
T Consensus 87 aD~d~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~p-Krc-gh~~gk-l~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa 163 (287)
T 3b8i_A 87 ADADHGYGNALNVMRTVVELERAGIAALTIEDTLLP-AQF-GRKSTD-LICVEEGVGKIRAALEARVDPALTIIARTNAE 163 (287)
T ss_dssp EECTTCSSSHHHHHHHHHHHHHHTCSEEEEECBCCS-CCT-TTCTTC-BCCHHHHHHHHHHHHHHCCSTTSEEEEEEETT
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCeEEEEcCCCCc-ccc-CCCCCC-ccCHHHHHHHHHHHHHcCCCCCcEEEEechhh
Confidence 8763 2 27888888887665 59999999755321 111 112223 345555556666665543 3 334444432
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
....+++++=++.++++|+|.|.+.+. .+.+.++++.+.+++|++.
T Consensus 164 ~~gl~~ai~Ra~ay~eAGAd~i~~e~~---------~~~~~~~~i~~~~~~P~ii 209 (287)
T 3b8i_A 164 LIDVDAVIQRTLAYQEAGADGICLVGV---------RDFAHLEAIAEHLHIPLML 209 (287)
T ss_dssp TSCHHHHHHHHHHHHHTTCSEEEEECC---------CSHHHHHHHHTTCCSCEEE
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEecCC---------CCHHHHHHHHHhCCCCEEE
Confidence 123467889999999999999999763 3568999999999999884
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.053 Score=46.09 Aligned_cols=134 Identities=10% Similarity=0.032 Sum_probs=81.8
Q ss_pred CceEEEec-CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 102 NKIILQIG-TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 102 ~p~ivql~-g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
.++++-+. +..++.+.+ ..++.|+|.|-+|.... .+.+.++++.+++ .+.++.+++-.+.
T Consensus 57 ~~v~lD~kl~dip~t~~~--~~~~~Gad~itvh~~~g----------------~~~l~~~~~~~~~-~g~~~~~~ll~~~ 117 (216)
T 1q6o_A 57 KIVLADAKIADAGKILSR--MCFEANADWVTVICCAD----------------INTAKGALDVAKE-FNGDVQIELTGYW 117 (216)
T ss_dssp SEEEEEEEECSCHHHHHH--HHHHTTCSEEEEETTSC----------------HHHHHHHHHHHHH-TTCEEEEEECSCC
T ss_pred CeEEEEEEecccHHHHHH--HHHhCCCCEEEEeccCC----------------HHHHHHHHHHHHH-cCCCceeeeeeCC
Confidence 45555442 245666655 33346999999985431 2335566677665 3667666554124
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEccc--CCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hh
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGR--TKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AF 253 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~--~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~v 253 (306)
+ .. -++.+++.|.+.+.+|-. +...+..+ ..+.++++++.. ++||++.|||+ ++++.++++.|+ .+
T Consensus 118 t-~~---~~~~l~~~~~~~~vl~~a~~~~~~G~~g--~~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~~~~aGad~ivv 190 (216)
T 1q6o_A 118 T-WE---QAQQWRDAGIGQVVYHRSRDAQAAGVAW--GEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIPIHVFIA 190 (216)
T ss_dssp C-HH---HHHHHHHTTCCEEEEECCHHHHHTTCCC--CHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSCCSEEEE
T ss_pred C-hh---hHHHHHhcCcHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhcCCCCcEEEECCcC-hhhHHHHHHcCCCEEEE
Confidence 4 22 223445668877776421 11112222 346667777766 68899999998 788888887754 99
Q ss_pred ccccCCCC
Q psy4398 254 LRNHYPVE 261 (306)
Q Consensus 254 Grall~~p 261 (306)
||+++..+
T Consensus 191 G~~I~~a~ 198 (216)
T 1q6o_A 191 GRSIRDAA 198 (216)
T ss_dssp SHHHHTSS
T ss_pred eehhcCCC
Confidence 99998643
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.078 Score=48.23 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~ 187 (306)
.+++++.+.++.+ ++||..+-+.++. .+++.-.+.++++|+.++ ..+.+-...+|+.+++.+
T Consensus 115 ~~~e~~~~~a~~~~~~G~~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~ 179 (332)
T 2ozt_A 115 GSGQAALEQWQQSWQRGQTTFKWKVGV---------------MSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANR 179 (332)
T ss_dssp CTGGGHHHHHHHHHHTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCcEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHH
Confidence 4566666665544 5699999997652 134455677888898874 455555555789999999
Q ss_pred HHHHHHHc---CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 188 LCKRLEAC---GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 188 ~a~~l~~~---G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
+++.+++. ++.+|- ++. .+.+++..+++++.+++||.+-=.+.+..+++++++.+
T Consensus 180 ~~~~l~~~~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~ 237 (332)
T 2ozt_A 180 WFAWLDRHGNGKIEYVE-------QPL-PPDQWQALLSLAQTVTTAIALDESVVSAAEVQRWVDRG 237 (332)
T ss_dssp HHHHHHHHCCTTEEEEE-------CCS-CTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTT
T ss_pred HHHHHHhhccCCcceeE-------CCC-CCCCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhC
Confidence 99999998 655542 222 24588999999999999999888899999999988763
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.038 Score=47.40 Aligned_cols=126 Identities=12% Similarity=0.050 Sum_probs=82.6
Q ss_pred CCCceEEEecCCC----HH--HHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIGTAD----PE--RALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~g~~----~~--~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.++++|..... ++ +..+.++.+.+ |+++|.++ .+ +.++.+++.+++|+
T Consensus 16 ~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~-------------------~~----~~i~~i~~~~~~p~ 72 (234)
T 1yxy_A 16 GGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRAN-------------------SV----RDIKEIQAITDLPI 72 (234)
T ss_dssp TSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEE-------------------SH----HHHHHHHTTCCSCE
T ss_pred CCEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecC-------------------CH----HHHHHHHHhCCCCE
Confidence 4556677765543 56 77778887764 99999885 12 34778888889998
Q ss_pred EEEeccC-----CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHH
Q psy4398 173 SCKIRVF-----HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGV 246 (306)
Q Consensus 173 ~vKir~g-----~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~ 246 (306)
..-++.+ .......+.++.+.++|+|.|+++....... .+....+.++.+++.+ +++++. ++.+.+++..+
T Consensus 73 i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~-~~~~~~~~i~~i~~~~~~~~v~~--~~~t~~ea~~a 149 (234)
T 1yxy_A 73 IGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRH-DGLDIASFIRQVKEKYPNQLLMA--DISTFDEGLVA 149 (234)
T ss_dssp EEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCT-TCCCHHHHHHHHHHHCTTCEEEE--ECSSHHHHHHH
T ss_pred EeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccCCC-CCccHHHHHHHHHHhCCCCeEEE--eCCCHHHHHHH
Confidence 4222211 1112245667788899999999986532211 0112357889999887 666554 67789998888
Q ss_pred HHhhh
Q psy4398 247 FSLNC 251 (306)
Q Consensus 247 l~~~v 251 (306)
.+.++
T Consensus 150 ~~~Ga 154 (234)
T 1yxy_A 150 HQAGI 154 (234)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 87765
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.08 Score=50.72 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
...+.++.+.++|+|.|.++... ... ...++.+.++++.+ ++|++ .|+|.+.+++..+++.|+
T Consensus 233 ~~~~~a~~l~~~G~d~ivi~~a~---g~~-~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~~~Ga 296 (491)
T 1zfj_A 233 DTFERAEALFEAGADAIVIDTAH---GHS-AGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGV 296 (491)
T ss_dssp THHHHHHHHHHHTCSEEEECCSC---TTC-HHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHcCCCeEEEeeec---Ccc-hhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHHHcCC
Confidence 35677888999999999998621 121 12578899999998 89999 899999999999998765
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.054 Score=48.46 Aligned_cols=119 Identities=17% Similarity=0.133 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
-|.+.+.+..+.+ +.|.|+|-++-+. |-...-..+.-.++++.+.+.++. |.+-+.. .+..++++++
T Consensus 17 iD~~~l~~lv~~li~~Gv~gl~~~Gtt----------GE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg~-~~t~~ai~la 84 (293)
T 1w3i_A 17 IDKEKLKIHAENLIRKGIDKLFVNGTT----------GLGPSLSPEEKLENLKAVYDVTNK-IIFQVGG-LNLDDAIRLA 84 (293)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTT----------TTGGGSCHHHHHHHHHHHHTTCSC-EEEECCC-SCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHcCC-EEEecCC-CCHHHHHHHH
Confidence 4567777777755 4599999986332 222223455557788888877754 6666652 4678899999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCC-CC---cHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHH
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRH-RN---RIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGG 245 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~-p~---~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~ 245 (306)
+.+++.|+|++.+.... |.. |. -+++.++|.+++++||+. | .|+ -+++.+.+
T Consensus 85 ~~A~~~Gadavlv~~P~----y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~ 146 (293)
T 1w3i_A 85 KLSKDFDIVGIASYAPY----YYPRMSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKE 146 (293)
T ss_dssp HHGGGSCCSEEEEECCC----SCSSCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH
T ss_pred HHHHhcCCCEEEEcCCC----CCCCCCHHHHHHHHHHHHhhCCCCEEEEECchhhCcCCCHHHHHh
Confidence 99999999999876432 222 22 256778899999999876 3 343 46776655
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.22 Score=44.60 Aligned_cols=186 Identities=11% Similarity=0.037 Sum_probs=97.9
Q ss_pred CCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec
Q psy4398 30 SNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG 109 (306)
Q Consensus 30 ~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~ 109 (306)
++..+..|.+ -|.....++.+.|+..+++...+... ..+.+. .+.++-.+.++- -+.+. ...+.|+++-+=
T Consensus 17 ~~~~i~~~~a--~D~~sA~~~~~aG~~ai~vsg~~~a~-~lG~pD-~~~vt~~em~~~--~~~I~---~~~~~PviaD~d 87 (295)
T 1s2w_A 17 SKDLEFIMEA--HNGLSARIVQEAGFKGIWGSGLSVSA-QLGVRD-SNEASWTQVVEV--LEFMS---DASDVPILLDAD 87 (295)
T ss_dssp SSSCEEEEEE--CSHHHHHHHHHHTCSCEEECCHHHHH-TC----------CHHHHHH--HHHHH---HTCSSCEEEECC
T ss_pred CCCcEEEecC--CCHHHHHHHHHcCCCEEEeChHHHHH-hCCCCC-CCCCCHHHHHHH--HHHHH---hcCCCCEEecCC
Confidence 3334444443 56666667778899777776322111 111110 011110000000 00111 123568888763
Q ss_pred -C-CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCcc---ccccCChHHHHHHHHHHHhcc-ccc--EEEEecc--
Q psy4398 110 -T-ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMG---AALLSTPDIACNILTTLISNL-SIP--VSCKIRV-- 178 (306)
Q Consensus 110 -g-~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G---~~l~~~~~~~~eiv~~v~~~~-~~p--v~vKir~-- 178 (306)
| .++++..+.++++. .|+++|.|.=+...+ +.+..| ..+. ..+...+-|++++++. +.+ |..|.-.
T Consensus 88 ~Gyg~~~~v~~~v~~l~~aGaagv~iED~~~~k--~cgH~gg~~k~l~-p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~ 164 (295)
T 1s2w_A 88 TGYGNFNNARRLVRKLEDRGVAGACLEDKLFPK--TNSLHDGRAQPLA-DIEEFALKIKACKDSQTDPDFCIVARVEAFI 164 (295)
T ss_dssp SSCSSHHHHHHHHHHHHHTTCCEEEEECBCC----------CTTCCBC-CHHHHHHHHHHHHHHCSSTTCEEEEEECTTT
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCc--cccccCCCCCccc-CHHHHHHHHHHHHHhcccCCcEEEEeehHHh
Confidence 2 35777777777665 599999997553211 111222 1222 2333344444554433 333 4444332
Q ss_pred -CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--CcEEEec
Q psy4398 179 -FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK--IPVIANG 235 (306)
Q Consensus 179 -g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~--ipvia~G 235 (306)
+...+++++=+++++++|+|.|.+.+.. .+.+.++++.+.++ +|++++-
T Consensus 165 a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~--------~~~~~~~~i~~~~~~~~P~i~~~ 216 (295)
T 1s2w_A 165 AGWGLDEALKRAEAYRNAGADAILMHSKK--------ADPSDIEAFMKAWNNQGPVVIVP 216 (295)
T ss_dssp TTCCHHHHHHHHHHHHHTTCSEEEECCCS--------SSSHHHHHHHHHHTTCSCEEECC
T ss_pred ccccHHHHHHHHHHHHHcCCCEEEEcCCC--------CCHHHHHHHHHHcCCCCCEEEeC
Confidence 1235788999999999999999997421 24578899999987 9999983
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.13 Score=47.22 Aligned_cols=203 Identities=12% Similarity=0.113 Sum_probs=118.2
Q ss_pred cccccccc---CCceEEccCCC--CCCHH----HHHHHHHcCCCEEEecceechhhhhhhh--hh--h------cccccc
Q psy4398 22 ANQANINY---SNKIILAPMVR--MNTLP----FRLLALDYGADLVYSEELVDHKLVKTER--KV--N------DLLNTI 82 (306)
Q Consensus 22 ~~~~~l~l---~n~i~lAPm~~--~t~~~----~r~~~~~~G~g~~~te~~~~~~~~~~~~--~~--~------~~l~~~ 82 (306)
+++++..+ .+++++|.++. ..+.. +...++++|+..+=-.+..++.+....- .. + .++...
T Consensus 7 i~i~~~~iG~~~~~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~ 86 (349)
T 2wqp_A 7 FKIGNRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERC 86 (349)
T ss_dssp EEETTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHH
T ss_pred EEECCEEECCCCceEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHh
Confidence 44555544 34788887763 44443 2334678899876554444433210000 00 0 000000
Q ss_pred cccCCCCCceeeecCCCCCCceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHH
Q psy4398 83 DFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL 161 (306)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv 161 (306)
++.. ..++.+.+.+.+.|.+++-..+-.. .++.+. .++|.+.| |+.-+++..++.++.
T Consensus 87 ~l~~-e~~~~L~~~~~~~Gi~~~st~~d~~------svd~l~~~~v~~~KI--------------~S~~~~n~~LL~~va 145 (349)
T 2wqp_A 87 ALNE-EDEIKLKEYVESKGMIFISTLFSRA------AALRLQRMDIPAYKI--------------GSGECNNYPLIKLVA 145 (349)
T ss_dssp CCCH-HHHHHHHHHHHHTTCEEEEEECSHH------HHHHHHHHTCSCEEE--------------CGGGTTCHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHHhCCeEEEeeCCHH------HHHHHHhcCCCEEEE--------------CcccccCHHHHHHHH
Confidence 0100 0023344555556666666664321 122233 36777777 444556766655543
Q ss_pred HHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCH
Q psy4398 162 TTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEI 240 (306)
Q Consensus 162 ~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~ 240 (306)
..+.||.+|.... +.+++...++.+.+.|.+.+.+|+.+.-.......|+..+..+++.+ ++||..++--..+
T Consensus 146 -----~~gkPviLstGma-t~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt~G~ 219 (349)
T 2wqp_A 146 -----SFGKPIILSTGMN-SIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTLDN 219 (349)
T ss_dssp -----TTCSCEEEECTTC-CHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSSSS
T ss_pred -----hcCCeEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCCCcH
Confidence 2589999999975 88899999999999999888888765433333346899999999999 9999876543335
Q ss_pred HHHHHHHHhhh
Q psy4398 241 VDYGGVFSLNC 251 (306)
Q Consensus 241 ~~~~~~l~~~v 251 (306)
.-...++..|+
T Consensus 220 ~~~~AAvAlGA 230 (349)
T 2wqp_A 220 YACLGAVALGG 230 (349)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCC
Confidence 55555555554
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.049 Score=49.20 Aligned_cols=122 Identities=10% Similarity=0.068 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~ 188 (306)
|.+.+.+..+.+ +.|.|+|-++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+++++
T Consensus 26 D~~~l~~lv~~li~~Gv~Gl~v~GtT----------GE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~-~~t~~ai~l 94 (311)
T 3h5d_A 26 NFDAIPALIEHLLAHHTDGILLAGTT----------AESPTLTHDEELELFAAVQKVVNGRVPLIAGVGT-NDTRDSIEF 94 (311)
T ss_dssp CTTHHHHHHHHHHHTTCCCEEESSTT----------TTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCC-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccc----------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-cCHHHHHHH
Confidence 446677777755 4599999996443 2222223444566777776665 4788887763 467889999
Q ss_pred HHHHHHcCC-cEEEEcccCCCCCCCCCC---cHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 189 CKRLEACGI-IAIGVHGRTKAERPRHRN---RIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 189 a~~l~~~G~-d~i~v~~~~~~~~~~~p~---~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
++.+++.|+ |++.+.... |..|. -.++.++|.+++++||+.= |---+++.+.++.+
T Consensus 95 a~~A~~~Ga~davlv~~P~----y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 160 (311)
T 3h5d_A 95 VKEVAEFGGFAAGLAIVPY----YNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLAD 160 (311)
T ss_dssp HHHHHHSCCCSEEEEECCC----SSCCCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHHHHhcCCCcEEEEcCCC----CCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc
Confidence 999999997 999876432 22221 3567788888889998753 33346776666554
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.031 Score=48.86 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=45.3
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-C----CChHH---HHHHHHHHHHcC
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-F----HNEAD---TIALCKRLEACG 196 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g----~~~~~---~~~~a~~l~~~G 196 (306)
.|+|.|||+-+-. -||. .|. ..+++.+++.+++||.|=+|+ + .+.++ ..+-++.+.++|
T Consensus 20 ~GAdRIELc~~L~--------~GGl---TPS--~g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~G 86 (256)
T 1twd_A 20 NGADRVELCAAPK--------EGGL---TPS--LGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELG 86 (256)
T ss_dssp TTCSEEEECBCGG--------GTCB---CCC--HHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEcCCcc--------cCCC---CCC--HHHHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 5999999963211 1111 111 223556677788999999987 2 23333 566677888999
Q ss_pred CcEEEEcccCCC
Q psy4398 197 IIAIGVHGRTKA 208 (306)
Q Consensus 197 ~d~i~v~~~~~~ 208 (306)
+|++++-.-+.+
T Consensus 87 adGvV~G~Lt~d 98 (256)
T 1twd_A 87 FPGLVTGVLDVD 98 (256)
T ss_dssp CSEEEECCBCTT
T ss_pred CCEEEEeeECCC
Confidence 999998655443
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.018 Score=48.32 Aligned_cols=71 Identities=18% Similarity=0.103 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhcccc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGral 257 (306)
|......-.+.+.+...|++-+-+. + .-+.++++++.+++|||+.|+|+|.+++++++++|+ ..++.-
T Consensus 112 DS~al~~~~~~i~~~~PD~iEiLPG--------i-~p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~ 182 (192)
T 3kts_A 112 DSSAYNKGVALIQKVQPDCIELLPG--------I-IPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKH 182 (192)
T ss_dssp SHHHHHHHHHHHHHHCCSEEEEECT--------T-CHHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCGG
T ss_pred EcchHHHHHHHHhhcCCCEEEECCc--------h-hHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHH
Confidence 4344566677778888898876421 2 237899999999999999999999999999999976 666666
Q ss_pred CCC
Q psy4398 258 YPV 260 (306)
Q Consensus 258 l~~ 260 (306)
+|+
T Consensus 183 LW~ 185 (192)
T 3kts_A 183 LWE 185 (192)
T ss_dssp GGT
T ss_pred HhC
Confidence 664
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.22 Score=44.76 Aligned_cols=123 Identities=12% Similarity=0.062 Sum_probs=74.6
Q ss_pred CCceEEEec-C-CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc---ccccEEE
Q psy4398 101 KNKIILQIG-T-ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN---LSIPVSC 174 (306)
Q Consensus 101 ~~p~ivql~-g-~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~---~~~pv~v 174 (306)
..|+++-+- | .++++..+.++.+. .|+.+|.|.=....+ +.+..++.-.-..+...+-|++.+++ .+.++.+
T Consensus 88 ~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k--~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I 165 (307)
T 3lye_A 88 GPPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLEDQILTK--RCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVL 165 (307)
T ss_dssp SCCEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEECCBCCCC----------CBCCHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCcEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCCCc--ccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 368888873 2 36778778777765 599999996443111 11111222122333333333444433 2445555
Q ss_pred EeccC----CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEe
Q psy4398 175 KIRVF----HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIAN 234 (306)
Q Consensus 175 Kir~g----~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~ 234 (306)
--|.. ...+++++=++.+.++|+|.|-+++. .+.+.++++.+.++ +|+.+|
T Consensus 166 ~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~---------~~~~~~~~i~~~~~~~Pv~~n 221 (307)
T 3lye_A 166 IARTDALQSLGYEECIERLRAARDEGADVGLLEGF---------RSKEQAAAAVAALAPWPLLLN 221 (307)
T ss_dssp EEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECCC---------SCHHHHHHHHHHHTTSCBEEE
T ss_pred EEechhhhccCHHHHHHHHHHHHHCCCCEEEecCC---------CCHHHHHHHHHHccCCceeEE
Confidence 54531 24567888899999999999998763 25678889998884 898765
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.072 Score=50.58 Aligned_cols=113 Identities=12% Similarity=0.220 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~ 187 (306)
.+++++++.|+.+ ++ ||..+-+..|.. +++.-.+.++++|+++ ++++.+-...+|+.+++++
T Consensus 192 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDaN~~w~~~~Ai~ 256 (445)
T 3vdg_A 192 LDPDGIVAQARRMIDEYGFSAIKLKGGVF---------------APEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVK 256 (445)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSEEEECSSS---------------CHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCC---------------CHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHH
Confidence 5788888877755 44 999999976531 2334456778888877 4567777766899999999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+++.+++. +.+|- ++. + +++..+++++.+++||.+.-.+.+..++.++++.
T Consensus 257 ~~~~L~~~-l~~iE-------eP~--~-~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~ 307 (445)
T 3vdg_A 257 VAAGLEGV-LEYLE-------DPT--P-GLDGMAEVAAQAPMPLATNMCVVAFDQLPAAVAK 307 (445)
T ss_dssp HHHHTTTT-CSEEE-------CCS--S-SHHHHHHHHHHCSSCEEESSSCCSGGGHHHHHHH
T ss_pred HHHHHhhH-HHeee-------CCC--C-CHHHHHHHHhcCCCCEEcCCcCCCHHHHHHHHHc
Confidence 99999988 77663 222 2 6888999999999999888788999999988875
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.031 Score=51.65 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE
Q psy4398 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI 232 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi 232 (306)
.++...+.++.+++....|+.+-+.. +. .+.++.+.++|+|.|+++.... .. ...++.++++++.+++|||
T Consensus 79 s~e~~~~~I~~vk~~~~~pvga~ig~--~~---~e~a~~l~eaGad~I~ld~a~G---~~-~~~~~~i~~i~~~~~~~Vi 149 (361)
T 3khj_A 79 DMESQVNEVLKVKNSGGLRVGAAIGV--NE---IERAKLLVEAGVDVIVLDSAHG---HS-LNIIRTLKEIKSKMNIDVI 149 (361)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECT--TC---HHHHHHHHHTTCSEEEECCSCC---SB-HHHHHHHHHHHHHCCCEEE
T ss_pred CHHHHHHHHHHHHhccCceEEEEeCC--CH---HHHHHHHHHcCcCeEEEeCCCC---Cc-HHHHHHHHHHHHhcCCcEE
Confidence 46677788899988777888888763 22 6788889999999999863321 11 1235788899998899998
Q ss_pred EecCCCCHHHHHHHHHhhh
Q psy4398 233 ANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v 251 (306)
+ |++.+.+.++.+.+.|+
T Consensus 150 v-g~v~t~e~A~~l~~aGa 167 (361)
T 3khj_A 150 V-GNVVTEEATKELIENGA 167 (361)
T ss_dssp E-EEECSHHHHHHHHHTTC
T ss_pred E-ccCCCHHHHHHHHHcCc
Confidence 7 56789999999998865
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.068 Score=50.73 Aligned_cols=113 Identities=17% Similarity=0.234 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~ 187 (306)
.+++++++.|+.+ ++ ||..+-+..|.. +++.-.+.++++|+++ +.++.+-...+|+.+++++
T Consensus 190 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~~~~~L~vDaN~~w~~~~Ai~ 254 (445)
T 3va8_A 190 LDPEGVVKQAKKIIDEYGFKAIKLKGGVF---------------PPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKW 254 (445)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CHHHHHHHHHHHHHhCCCCcEeeeCCCCCCHHHHHH
Confidence 5788888877755 44 999999976532 2344456788888877 4567776666899999999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+++.+++. +.+|- ++. .+++..+++++.+++||.+.-.+.+..++.++++.
T Consensus 255 ~~~~L~~~-l~~iE-------eP~---~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ 305 (445)
T 3va8_A 255 VAKELEGI-VEYLE-------DPA---GEIEGMAAVAKEASMPLATNMAVVAFDHLPPSILQ 305 (445)
T ss_dssp HHHHTTTT-CSEEE-------SCB---SHHHHHHHHHTTCSSCEEESSSCCSGGGHHHHHHT
T ss_pred HHHHHhhh-cCeEe-------ecC---cCHHHHHHHHHcCCCCEEeCCccCCHHHHHHHHHc
Confidence 99999988 77663 222 27888899999999999888788999999998875
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.26 Score=44.20 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=83.4
Q ss_pred CCceEEEecCCC-HHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 101 KNKIILQIGTAD-PERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~-~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
+.++++-+--.| ++....+++.+.. |+|.+.+|... + ++.+...++..++.-..|..+-+..
T Consensus 76 g~~IflDlKl~DIpnTv~~av~~~a~lGaD~vTVHa~~-----------G-----~~~m~aa~e~a~~~~~~~~llaVtv 139 (303)
T 3ru6_A 76 DFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHASA-----------G-----KIAIQEVMTRLSKFSKRPLVLAVSA 139 (303)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGG-----------C-----HHHHHHHHHHHTTSSSCCEEEEECS
T ss_pred CCCEEEEeeeccCchhHHHHHHHHHhcCCCEEEEeccC-----------C-----HHHHHHHHHHHHhcCCCceEEEEEE
Confidence 456777765343 4444455555554 99999998432 1 3444455555543322233322211
Q ss_pred --CCCh------------HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCH---
Q psy4398 179 --FHNE------------ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEI--- 240 (306)
Q Consensus 179 --g~~~------------~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~--- 240 (306)
..+. +...++|+...++|++++++++. . +..|++.++ -.++.++||+-.
T Consensus 140 LTS~s~~~l~~l~~~~~~e~V~~lA~~a~~~G~dGvV~s~~----------E---~~~IR~~~~~~fl~VTPGIr~qG~~ 206 (303)
T 3ru6_A 140 LTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVF----------E---SKKIKEHTSSNFLTLTPGIRPFGET 206 (303)
T ss_dssp CTTCCHHHHHHHHSSCHHHHHHHHHHHHHHTTCSEEECCTT----------T---HHHHHHHSCTTSEEEECCCCTTC--
T ss_pred ecCCCHHHHHHHHcCCHHHHHHHHHHHHHHcCCCEEEECHH----------H---HHHHHHhCCCccEEECCCcCcccCC
Confidence 1221 22456888888999999987421 1 467788773 467889999821
Q ss_pred -------HHHHHHHHhhh---hhccccCCCCCc--hHHHHHHHHHhcCCC
Q psy4398 241 -------VDYGGVFSLNC---AFLRNHYPVEKL--PKTILYAHCKYKRFE 278 (306)
Q Consensus 241 -------~~~~~~l~~~v---~vGrall~~p~~--~~~~l~~~~~~~g~~ 278 (306)
.+..++++.|+ .+||+++..+.. .-..+.+-++++++.
T Consensus 207 ~~DQ~Rv~t~~~a~~aGAd~iVvGr~I~~a~dp~~a~~~i~~~i~~~~~~ 256 (303)
T 3ru6_A 207 NDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAVCEKILNKIHRKNIS 256 (303)
T ss_dssp ------CCSHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHC-----
T ss_pred cccccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 14556666654 999999874422 223555666665543
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.034 Score=47.68 Aligned_cols=136 Identities=7% Similarity=-0.065 Sum_probs=79.4
Q ss_pred CCceEEEec-CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 101 KNKIILQIG-TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 101 ~~p~ivql~-g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
+.++++-+- +..|+.+.+++ ++.|+|.+.+|.... .+.+.+.++.+++.-..|..+-+..
T Consensus 58 ~~~iflDlKl~Dip~t~~~~~--~~~Gad~vtVH~~~g----------------~~~l~~a~~~~~~~g~~~~~~~Vt~l 119 (221)
T 3exr_A 58 DKIIVADTKCADAGGTVAKNN--AVRGADWMTCICSAT----------------IPTMKAARKAIEDINPDKGEIQVELY 119 (221)
T ss_dssp TSEEEEEEEECSCHHHHHHHH--HTTTCSEEEEETTSC----------------HHHHHHHHHHHHHHCTTTCEEEEECC
T ss_pred CCcEEEEEEeeccHHHHHHHH--HHcCCCEEEEeccCC----------------HHHHHHHHHHHHhcCCCcceEEEEEc
Confidence 346666653 45576666652 446999999986542 2335556666654311233333332
Q ss_pred -CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-CCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---h
Q psy4398 179 -FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRH-RNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---C 251 (306)
Q Consensus 179 -g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v 251 (306)
.++.+. ++.+.+.|++.+.++-....+ ..+ ....+-++.+++.. +++|...|||+ +++...+.++| +
T Consensus 120 ts~~~~~----~~~~~~~~~~~~v~~~a~~~~-~~Gvv~s~~e~~~ir~~~~~~~~i~v~gGI~-~~~~~~~~~aGad~~ 193 (221)
T 3exr_A 120 GDWTYDQ----AQQWLDAGISQAIYHQSRDAL-LAGETWGEKDLNKVKKLIEMGFRVSVTGGLS-VDTLKLFEGVDVFTF 193 (221)
T ss_dssp SSCCHHH----HHHHHHTTCCEEEEECCHHHH-HHTCCCCHHHHHHHHHHHHHTCEEEEESSCC-GGGGGGGTTCCCSEE
T ss_pred CCCCHHH----HHHHHcCCHHHHHHHHHHhcC-CCccccCHHHHHHHHHhhcCCceEEEECCCC-HHHHHHHHHCCCCEE
Confidence 233332 335566899988875321100 011 12234566666665 68899999995 67777777776 3
Q ss_pred hhccccCCC
Q psy4398 252 AFLRNHYPV 260 (306)
Q Consensus 252 ~vGrall~~ 260 (306)
.+||+++..
T Consensus 194 VvG~~I~~a 202 (221)
T 3exr_A 194 IAGRGITEA 202 (221)
T ss_dssp EECHHHHTS
T ss_pred EECchhhCC
Confidence 999999863
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.11 Score=46.09 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=70.1
Q ss_pred ceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc--
Q psy4398 103 KIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV-- 178 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~-- 178 (306)
.+++.|.+.+.++..+.++.+. .|+|.||+- -|-+.. ..+.+.+.+.+..+|+.+ +.|+.+=+|.
T Consensus 41 ~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElR---------vD~l~~--~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~ 109 (276)
T 3o1n_A 41 KIIVSLMGKTITDVKSEALAYREADFDILEWR---------VDHFAN--VTTAESVLEAAGAIREIITDKPLLFTFRSAK 109 (276)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTTSCCSEEEEE---------GGGCTT--TTCHHHHHHHHHHHHHHCCSSCEEEECCBGG
T ss_pred EEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEE---------eccccc--cCcHHHHHHHHHHHHHhcCCCCEEEEEEEhh
Confidence 4778999999999988888887 599999993 333321 124577889999999887 7999998886
Q ss_pred --C---CChHHHHHHHHHHHHcC-CcEEEEc
Q psy4398 179 --F---HNEADTIALCKRLEACG-IIAIGVH 203 (306)
Q Consensus 179 --g---~~~~~~~~~a~~l~~~G-~d~i~v~ 203 (306)
| .+.++..++.+.+.+.| +|+|.|-
T Consensus 110 eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvE 140 (276)
T 3o1n_A 110 EGGEQALTTGQYIDLNRAAVDSGLVDMIDLE 140 (276)
T ss_dssp GTCSBCCCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2 13456788888888899 9999985
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.18 Score=45.09 Aligned_cols=114 Identities=11% Similarity=0.094 Sum_probs=72.8
Q ss_pred hcCCCEEE----EccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE--e--ccC------CChHHHHHHH
Q psy4398 124 EHDVAAID----INMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK--I--RVF------HNEADTIALC 189 (306)
Q Consensus 124 ~~g~d~ve----ln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK--i--r~g------~~~~~~~~~a 189 (306)
+.|+|+|- +|.++|.. .+..+.+.+++++.. ..++|+.+- + +.| .+++.....+
T Consensus 139 rlGADaV~~l~~i~~Gs~~e-----------~~~l~~la~vv~ea~-~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aa 206 (307)
T 3fok_A 139 DRGVDFAKTLVRINLSDAGT-----------APTLEATAHAVNEAA-AAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSV 206 (307)
T ss_dssp HHTCCEEEEEEEECTTCTTH-----------HHHHHHHHHHHHHHH-HTTCCEEEEEEEEEEETTEEEECCSHHHHHHHH
T ss_pred HCCCCEEEEEEEECCCChhH-----------HHHHHHHHHHHHHHH-HcCCcEEEEeeccccCCCCcCCCCCHHHHHHHH
Confidence 34999966 56666552 112344455555543 348887764 2 111 2455678888
Q ss_pred HHHHHcCCc----EEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC--CHHHH----HHHHH-h---hhhhcc
Q psy4398 190 KRLEACGII----AIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK--EIVDY----GGVFS-L---NCAFLR 255 (306)
Q Consensus 190 ~~l~~~G~d----~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~--s~~~~----~~~l~-~---~v~vGr 255 (306)
+...+.|+| .|-+. |. +.++++.+.+.+||+..||=. +.+++ +++++ . |+.+||
T Consensus 207 RiAaELGADs~~tivK~~-------y~-----e~f~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGR 274 (307)
T 3fok_A 207 AIAAGLGNDSSYTWMKLP-------VV-----EEMERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGR 274 (307)
T ss_dssp HHHHTCSSCCSSEEEEEE-------CC-----TTHHHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECT
T ss_pred HHHHHhCCCcCCCEEEeC-------Cc-----HHHHHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeech
Confidence 999999999 87762 21 345888888899999998854 33333 45555 3 459999
Q ss_pred ccCCCC
Q psy4398 256 NHYPVE 261 (306)
Q Consensus 256 all~~p 261 (306)
.+++.|
T Consensus 275 NIfQ~~ 280 (307)
T 3fok_A 275 TLLYPQ 280 (307)
T ss_dssp TTSSCS
T ss_pred hhccCC
Confidence 999854
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.035 Score=49.86 Aligned_cols=84 Identities=8% Similarity=-0.005 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcccc-cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEE
Q psy4398 157 ACNILTTLISNLSI-PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIA 233 (306)
Q Consensus 157 ~~eiv~~v~~~~~~-pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia 233 (306)
+.+-++++++..+. ++.|-+. +. +-++.+.++|+|+|-++. ...+.++++++.+ +++|.+
T Consensus 195 i~~ai~~~r~~~~~~kI~vev~---tl----ee~~eA~~aGaD~I~ld~----------~~~e~l~~~v~~~~~~~~I~A 257 (296)
T 1qap_A 195 VRQAVEKAFWLHPDVPVEVEVE---NL----DELDDALKAGADIIMLDN----------FNTDQMREAVKRVNGQARLEV 257 (296)
T ss_dssp HHHHHHHHHHHSTTSCEEEEES---SH----HHHHHHHHTTCSEEEESS----------CCHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHHHhCCCCcEEEEeC---CH----HHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCeEEE
Confidence 45667777776643 4555444 22 334444678999999864 3557777777777 699999
Q ss_pred ecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 234 NGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
+||| +.+++.++.+.|+ .+|+..+
T Consensus 258 SGGI-t~~~i~~~a~~GvD~isvGsli~ 284 (296)
T 1qap_A 258 SGNV-TAETLREFAETGVDFISVGALTK 284 (296)
T ss_dssp CCCS-CHHHHHHHHHTTCSEEECSHHHH
T ss_pred ECCC-CHHHHHHHHHcCCCEEEEeHHHc
Confidence 9999 8999999999876 6666544
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.097 Score=47.72 Aligned_cols=113 Identities=17% Similarity=0.290 Sum_probs=84.6
Q ss_pred ecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-ChHHHH
Q psy4398 108 IGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-NEADTI 186 (306)
Q Consensus 108 l~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-~~~~~~ 186 (306)
+...+++++.+.++...+||..+-+.+|.. . -.+.++++|+.++..+.+-...+| +.++..
T Consensus 130 ~~~~~~e~~~~~a~~~~~g~~~~K~Kvg~~--------------~----d~~~v~avR~~~~~~l~vDaN~~~t~~~~A~ 191 (338)
T 3ijl_A 130 IGIDTPDVVRAKTKECAGLFNILKVKLGRD--------------N----DKEMIETIRSVTDLPIAVDANQGWKDRQYAL 191 (338)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSSEEEECSSS--------------C----HHHHHHHHHTTCCCCEEEECTTCCCCHHHHH
T ss_pred EeCCCHHHHHHHHHHHHhcccEEEEecCcH--------------H----HHHHHHHHHhhcCCcEEEECcCCCCCHHHHH
Confidence 345688888887776555899999976631 1 245678889888766666666689 599999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGV 246 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~ 246 (306)
++++.+++.++.+|- ++. .+.+++..+++++.+++||.+-=.+.+..++.++
T Consensus 192 ~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~ 243 (338)
T 3ijl_A 192 DMIHWLKEKGIVMIE-------QPM-PKEQLDDIAWVTQQSPLPVFADESLQRLGDVAAL 243 (338)
T ss_dssp HHHHHHHHTTEEEEE-------CCS-CTTCHHHHHHHHHTCSSCEEESTTCCSGGGTGGG
T ss_pred HHHHHHhhCCCCEEE-------CCC-CCCcHHHHHHHHhcCCCCEEECCCCCCHHHHHHH
Confidence 999999999876652 222 3457899999999999999887777777766554
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.15 Score=47.43 Aligned_cols=121 Identities=10% Similarity=0.178 Sum_probs=88.0
Q ss_pred CceEEEecCCC-HHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc
Q psy4398 102 NKIILQIGTAD-PERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~-~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~ 178 (306)
.|+...++..+ ++++.+.++.. ++||..+-+.++ |. .+ .+.++++|+.+ ++.+.+-...
T Consensus 138 v~~~~~~~~~~~~e~~~~~~~~~~~~G~~~~K~Kv~-~~-------------~d----~~~v~avR~~~~~~~l~vDaN~ 199 (388)
T 3qld_A 138 VEVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIA-PG-------------RD----RAAIKAVRLRYPDLAIAADANG 199 (388)
T ss_dssp EEBEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECB-TT-------------BS----HHHHHHHHHHCTTSEEEEECTT
T ss_pred EEEeEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC-cH-------------HH----HHHHHHHHHHCCCCeEEEECCC
Confidence 45666666554 88888877765 469999999864 11 23 34567777776 3445555555
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+|+.+++.. ++.+++.++.+|- ++. .+.+++..+++++.+++||.+-=.+.+..++.++++.
T Consensus 200 ~~~~~~A~~-~~~l~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~ 261 (388)
T 3qld_A 200 SYRPEDAPV-LRQLDAYDLQFIE-------QPL-PEDDWFDLAKLQASLRTPVCLDESVRSVRELKLTARL 261 (388)
T ss_dssp CCCGGGHHH-HHHGGGGCCSCEE-------CCS-CTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHH
T ss_pred CCChHHHHH-HHHHhhCCCcEEE-------CCC-CcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHc
Confidence 788888876 7899988877663 222 3457888999999999999987788999999988875
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.46 Score=41.56 Aligned_cols=170 Identities=12% Similarity=0.068 Sum_probs=95.8
Q ss_pred CCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec---CCCHHH
Q psy4398 39 VRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG---TADPER 115 (306)
Q Consensus 39 ~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~---g~~~~~ 115 (306)
.+.-|.....++.+.|+..+++...+... ..+.+.. ..++-.+.+.- -+.+.+. .+.|+++-+= |.++
T Consensus 25 ~~ayD~~sA~~~~~aG~dai~vg~~s~a~-~~G~pD~-~~vt~~em~~~--~~~I~r~---~~~pviaD~~~Gyg~~~-- 95 (255)
T 2qiw_A 25 PTVWDTWSAGLVEEAGFSGLTIGSHPVAD-ATGSSDG-ENMNFADYMAV--VKKITSA---VSIPVSVDVESGYGLSP-- 95 (255)
T ss_dssp CEESSHHHHHHHHHTTCSCEEECHHHHHH-HTTCCTT-TCSCHHHHHHH--HHHHHHH---CSSCEEEECTTCTTCCH--
T ss_pred ecCcCHHHHHHHHHcCCCEEEEChHHHHH-hCCCCCC-CCcCHHHHHHH--HHHHHhc---CCCCEEeccCCCcCcHH--
Confidence 34567777778888999888776321111 1111100 01100000000 0111122 2368888762 3445
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEecc-----CCC-----h
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKIRV-----FHN-----E 182 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKir~-----g~~-----~ 182 (306)
+..+.+.++.|+++|.|.=+... -|..+ -..+...+-|++++++. ++|+.|--|. |.+ .
T Consensus 96 ~~~~~~l~~aGa~gv~iEd~~~~-------~~k~l-~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~ 167 (255)
T 2qiw_A 96 ADLIAQILEAGAVGINVEDVVHS-------EGKRV-REAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPM 167 (255)
T ss_dssp HHHHHHHHHTTCCEEEECSEEGG-------GTTEE-CCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHH
T ss_pred HHHHHHHHHcCCcEEEECCCCCC-------CCCcc-cCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHH
Confidence 44444444569999999633211 01112 24455566666665542 5774444443 211 4
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
+++++=++.++++|+|.|.+.+. .+.+.++++.+.+++|+-.+
T Consensus 168 ~~ai~ra~a~~eAGAd~i~~e~~---------~~~~~~~~i~~~~~~P~n~~ 210 (255)
T 2qiw_A 168 VEAIKRIKLMEQAGARSVYPVGL---------STAEQVERLVDAVSVPVNIT 210 (255)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCC---------CSHHHHHHHHTTCSSCBEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEcCC---------CCHHHHHHHHHhCCCCEEEE
Confidence 67888899999999999999753 35688999999999998776
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.021 Score=55.60 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=61.4
Q ss_pred HHHHHHHHcC---CcEEEEcccCCC---CCCC-CCCcHHHHHHHHhh------CCCcEEEecCCCCHHHHHHHHH-----
Q psy4398 187 ALCKRLEACG---IIAIGVHGRTKA---ERPR-HRNRIEMIRTLTQH------LKIPVIANGGSKEIVDYGGVFS----- 248 (306)
Q Consensus 187 ~~a~~l~~~G---~d~i~v~~~~~~---~~~~-~p~~~~~v~~i~~~------~~ipvia~GGI~s~~~~~~~l~----- 248 (306)
+-++.+.+.| +|+|.+...... .... .+..++.++++++. .++|+++-||| +.+++.++++
T Consensus 119 eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~~~~~ 197 (540)
T 3nl6_A 119 EEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQCVSS 197 (540)
T ss_dssp HHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHHCBCT
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHhhccc
Confidence 3455667789 999998554321 2222 34567778777765 48999999999 6889999986
Q ss_pred ---h---hhhhccccCCCCCch--HHHHHHHHHhcCCC
Q psy4398 249 ---L---NCAFLRNHYPVEKLP--KTILYAHCKYKRFE 278 (306)
Q Consensus 249 ---~---~v~vGrall~~p~~~--~~~l~~~~~~~g~~ 278 (306)
. +++++++++..+... -..+.+.+++..+.
T Consensus 198 g~~~GadgvAVvsaI~~a~dp~~a~~~l~~~~~~~~~~ 235 (540)
T 3nl6_A 198 NGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYK 235 (540)
T ss_dssp TSSCBCSCEEESHHHHTCTTHHHHHHHHHHHHHCCBCC
T ss_pred ccccCceEEEEeHHHhcCCCHHHHHHHHHHHHHhCCCc
Confidence 3 569999998754322 23666667765544
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.12 Score=44.61 Aligned_cols=82 Identities=24% Similarity=0.158 Sum_probs=64.9
Q ss_pred HHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC
Q psy4398 159 NILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK 238 (306)
Q Consensus 159 eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~ 238 (306)
++.+.+++. ++..=+|. .+.++..++++.+.+.|+..|-++-++ |..++.++++++.+.-.+++.|.|.
T Consensus 26 ~~~~~l~~~---~vv~Vir~-~~~~~a~~~a~al~~gGi~~iEvt~~t-------~~a~e~I~~l~~~~~~~~iGaGTVl 94 (232)
T 4e38_A 26 TINNQLKAL---KVIPVIAI-DNAEDIIPLGKVLAENGLPAAEITFRS-------DAAVEAIRLLRQAQPEMLIGAGTIL 94 (232)
T ss_dssp HHHHHHHHH---CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHHHHHCTTCEEEEECCC
T ss_pred HHHHHHHhC---CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------CCHHHHHHHHHHhCCCCEEeECCcC
Confidence 355555443 44444553 467889999999999999999997654 4467999999999866899999999
Q ss_pred CHHHHHHHHHhhh
Q psy4398 239 EIVDYGGVFSLNC 251 (306)
Q Consensus 239 s~~~~~~~l~~~v 251 (306)
+.++++.+++.|+
T Consensus 95 t~~~a~~Ai~AGA 107 (232)
T 4e38_A 95 NGEQALAAKEAGA 107 (232)
T ss_dssp SHHHHHHHHHHTC
T ss_pred CHHHHHHHHHcCC
Confidence 9999999999865
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.12 Score=47.39 Aligned_cols=120 Identities=16% Similarity=0.141 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
-|.+.+.+..+.+ +.|.|+|=++.+. |-...-..+.-.++++. ...-.+||++-+.. .+..++++++
T Consensus 44 ID~~~l~~lv~~li~~Gv~Gl~v~GtT----------GE~~~Ls~eEr~~vi~~-~~~grvpViaGvg~-~st~eai~la 111 (344)
T 2hmc_A 44 PDFDALVRKGKELIADGMSAVVYCGSM----------GDWPLLTDEQRMEGVER-LVKAGIPVIVGTGA-VNTASAVAHA 111 (344)
T ss_dssp BCHHHHHHHHHHHHHTTCCCEEESSGG----------GTGGGSCHHHHHHHHHH-HHHTTCCEEEECCC-SSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccC----------cChhhCCHHHHHHHHHH-HhCCCCcEEEecCC-CCHHHHHHHH
Confidence 4667787777755 4599999886332 22222233333455554 11125789888763 4678899999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCC-CC---cHHHHHHHHh-hCCCcEEE-e---cCC-CCHHHHHHH
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRH-RN---RIEMIRTLTQ-HLKIPVIA-N---GGS-KEIVDYGGV 246 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~-p~---~~~~v~~i~~-~~~ipvia-~---GGI-~s~~~~~~~ 246 (306)
+.+++.|+|++.+.... |.. +. -+++.+.|.+ ++++|||. | .|+ -+++.+.++
T Consensus 112 ~~A~~~Gadavlv~~P~----y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P~tg~~l~~e~~~~L 174 (344)
T 2hmc_A 112 VHAQKVGAKGLMVIPRV----LSRGSVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFATRADLFFAL 174 (344)
T ss_dssp HHHHHHTCSEEEECCCC----SSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCCCHHHHHHH
T ss_pred HHHHhcCCCEEEECCCc----cCCCCCHHHHHHHHHHHHhhCCCCcEEEEecCccCCCcCHHHHHHH
Confidence 99999999999886432 322 21 2567789999 78999766 3 243 478888777
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.19 Score=46.42 Aligned_cols=149 Identities=8% Similarity=0.116 Sum_probs=100.3
Q ss_pred CCceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc---cccEEEEe
Q psy4398 101 KNKIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL---SIPVSCKI 176 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~---~~pv~vKi 176 (306)
..|+...+...++++..+.++.. ++||..+-+.+|.. +.+.-.+.++++++++ ++.+.+-.
T Consensus 139 ~v~~y~s~~~~~~~~~~~~a~~~~~~G~~~~KiKvg~~---------------~~~~di~~v~~vr~a~~g~~~~l~vDa 203 (376)
T 4h2h_A 139 SVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGAR---------------PIEIDIEAIRKVWEAVRGTGIALAADG 203 (376)
T ss_dssp EEECEEEECSCCHHHHHHHHHHHHHHTCSEEEEECCSS---------------CHHHHHHHHHHHHHHHTTSCCEEEEEC
T ss_pred ceeEeeecccCCHHHHHHHHHHHHhcCceEEEEecCCC---------------CHHHHHHHHHHHHhhccCCeeEEEEee
Confidence 34677778888888887766655 45999999987642 1223345666676655 34566666
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccc
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRN 256 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGra 256 (306)
..+|+.+++.++++.+++.+. + + +++. .+++-.+++++.+++||.+-=.+.+..++.++++.+. .
T Consensus 204 N~~~~~~~A~~~~~~l~~~~~-~--i-----EeP~---~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~----~ 268 (376)
T 4h2h_A 204 NRGWTTRDALRFSRECPDIPF-V--M-----EQPC---NSFEDLEAIRPLCHHALYMDEDGTSLNTVITAAATSL----V 268 (376)
T ss_dssp TTCCCHHHHHHHHHHCTTSCE-E--E-----ESCS---SSHHHHHHHGGGCCSCEEESTTCCSHHHHHHHHHTTC----C
T ss_pred ccCCCHHHHHHHHHHHhhccc-c--c-----cCCc---chhhhHhhhhhcccCccccCcccCCHHHHHHHHHhhc----c
Confidence 667999999999999987763 2 2 2222 2467789999999999988777889999988887532 1
Q ss_pred cCCCCCchH-------HHHHHHHHhcCCCC
Q psy4398 257 HYPVEKLPK-------TILYAHCKYKRFEV 279 (306)
Q Consensus 257 ll~~p~~~~-------~~l~~~~~~~g~~~ 279 (306)
-+-+|...+ +.+.++.+.+|+++
T Consensus 269 d~v~~d~~~~GGit~~~~ia~~a~~~gi~~ 298 (376)
T 4h2h_A 269 DGFGMKVSRIGGLQHMRAFRDFCAARNLPH 298 (376)
T ss_dssp SEECCBHHHHTSHHHHHHHHHHHHHHTCCE
T ss_pred CccccccceeCCcHHHHHHHHHHHHcCCCE
Confidence 112222222 25566777888774
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.075 Score=47.05 Aligned_cols=94 Identities=13% Similarity=0.154 Sum_probs=61.9
Q ss_pred HHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHH
Q psy4398 114 ERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL 192 (306)
Q Consensus 114 ~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l 192 (306)
+...+-|+ .+++|+|.|+||..++. .+..+.+..+++++++.+++|+++-.. + .+.+++.
T Consensus 34 ~~a~~~a~~~v~~GAdiIDIg~~s~~------------~eE~~rv~~vi~~l~~~~~~pisIDT~---~----~~v~~aa 94 (271)
T 2yci_X 34 RPIQEWARRQAEKGAHYLDVNTGPTA------------DDPVRVMEWLVKTIQEVVDLPCCLDST---N----PDAIEAG 94 (271)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSCS------------SCHHHHHHHHHHHHHHHCCCCEEEECS---C----HHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCcCc------------hhHHHHHHHHHHHHHHhCCCeEEEeCC---C----HHHHHHH
Confidence 33444444 44569999999987632 245788899999999888999988766 2 3445555
Q ss_pred HHc--CCcEEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 193 EAC--GIIAIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 193 ~~~--G~d~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
.++ |++.|. +++.. ..++-+..+.+..+.|+|+.
T Consensus 95 l~a~~Ga~iINdvs~~~--------d~~~~~~~~~a~~~~~vv~m 131 (271)
T 2yci_X 95 LKVHRGHAMINSTSADQ--------WKMDIFFPMAKKYEAAIIGL 131 (271)
T ss_dssp HHHCCSCCEEEEECSCH--------HHHHHHHHHHHHHTCEEEEE
T ss_pred HHhCCCCCEEEECCCCc--------cccHHHHHHHHHcCCCEEEE
Confidence 555 998887 65421 12334444555668888874
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.067 Score=48.81 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE
Q psy4398 155 DIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACG--IIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI 232 (306)
Q Consensus 155 ~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G--~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi 232 (306)
+...++++.+++. +.|+.+-+. ... +..+.++.+.+.| ++.+.++... + . ....++.++++++.++.|++
T Consensus 81 ~~~~~~i~~~~~~-g~~v~v~~g--~~~-~~~~~a~~~~~~g~~~~~i~i~~~~--G-~-~~~~~~~i~~lr~~~~~~~v 152 (336)
T 1ypf_A 81 EKRISFIRDMQSR-GLIASISVG--VKE-DEYEFVQQLAAEHLTPEYITIDIAH--G-H-SNAVINMIQHIKKHLPESFV 152 (336)
T ss_dssp GGHHHHHHHHHHT-TCCCEEEEC--CSH-HHHHHHHHHHHTTCCCSEEEEECSS--C-C-SHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHHhc-CCeEEEeCC--CCH-HHHHHHHHHHhcCCCCCEEEEECCC--C-C-cHHHHHHHHHHHHhCCCCEE
Confidence 3455667766643 567777653 443 3456788889999 9999885421 1 1 12467899999999965555
Q ss_pred EecCCCCHHHHHHHHHhhh
Q psy4398 233 ANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v 251 (306)
..|+|.++++++.+++.|+
T Consensus 153 i~G~v~s~e~A~~a~~aGa 171 (336)
T 1ypf_A 153 IAGNVGTPEAVRELENAGA 171 (336)
T ss_dssp EEEEECSHHHHHHHHHHTC
T ss_pred EECCcCCHHHHHHHHHcCC
Confidence 5677899999999999875
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.13 Score=48.71 Aligned_cols=113 Identities=12% Similarity=0.208 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~ 187 (306)
.+++++++.|+.+ ++ ||..+-+..|.. +++.-.+.++++|+++ +..+.+-...+|+.+++++
T Consensus 187 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai~ 251 (441)
T 3vc5_A 187 LDPDGIVAQARLLIGEYGFRSIKLKGGVF---------------PPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIR 251 (441)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CHHHHHHHHHHHHHhCCCCcEeccCCCCCCHHHHHH
Confidence 5788888887765 44 999999976532 2333456778888887 4566776666899999999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
+++.+++. +.+|- ++. .+++..+++++.+++||.+.=.+.+..++.++++.
T Consensus 252 ~~~~L~~~-l~~iE-------eP~---~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~ 302 (441)
T 3vc5_A 252 VGRALDGV-LEYLE-------DPT---PGIDGMARVAAEVPMPLATNMCVVTPEHLPAAVER 302 (441)
T ss_dssp HHHHTTTT-CSEEE-------CCS---SSHHHHHHHHTTSSSCEEESSSCCSGGGHHHHHHH
T ss_pred HHHHHHHH-HHHhh-------ccC---CCHHHHHHHHhcCCCCEEeCCCCCCHHHHHHHHHh
Confidence 99999987 76663 222 26788899999999999887678888998888875
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.2 Score=47.55 Aligned_cols=144 Identities=8% Similarity=0.074 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHH-h-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-E-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~ 187 (306)
.+++++++.++.+ + .||..+-+.+|.+. ++.-.+.++++|++. +..+.+-...+|+.+++.+
T Consensus 181 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~---------------~~~Di~~v~avRea~pd~~L~vDaN~~w~~~~A~~ 245 (450)
T 3mzn_A 181 MTPEAVANLARAAYDRYGFKDFKLKGGVLR---------------GEEEADCIRALHEAFPEARLALDPNGAWKLDEAVR 245 (450)
T ss_dssp CSHHHHHHHHHHHHHHHCCSEEEEECSSSC---------------HHHHHHHHHHHHHHCTTSEEEEECTTCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCCCC---------------HHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHH
Confidence 5788888887754 4 49999999876422 233355678888875 3455555555799999999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCc----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCCC
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNR----IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVEK 262 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~----~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p~ 262 (306)
+++.+++. +.+|- ++. .+.+ ++..+++++.+++||.+.=-+.+..++.++++.+. .+ +..++.
T Consensus 246 ~~~~L~~~-i~~iE-------eP~-~~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~di---~~~d~~ 313 (450)
T 3mzn_A 246 VLEPIKHL-LSYAE-------DPC-GQEGGFSGRETMAEFKKRTGLPTATNMIATDYKQLQYAVQLNSVDI---PLADCH 313 (450)
T ss_dssp HHGGGGGG-CSEEE-------SSB-CCBTTBCHHHHHHHHHHHHCCCEEESSSSSSHHHHHHHHHHTCCSE---EBCCHH
T ss_pred HHHHhhhc-cceee-------CCC-CcccccchHHHHHHHHHhcCCCEEeCCccCCHHHHHHHHHcCCCCE---EEecCc
Confidence 99999987 66553 222 2223 67889999999999887545677888888887532 11 111220
Q ss_pred ---c-hHHHHHHHHHhcCCCCCc
Q psy4398 263 ---L-PKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 263 ---~-~~~~l~~~~~~~g~~~~~ 281 (306)
+ .-+.+.+..+++|++..+
T Consensus 314 ~GGit~a~kia~lA~a~gv~~~~ 336 (450)
T 3mzn_A 314 FWTMQGAVAVGELCNEWGMTWGS 336 (450)
T ss_dssp HHCHHHHHHHHHHHHHTTCCCBC
T ss_pred cCCHHHHHHHHHHHHHcCCEEEe
Confidence 1 113666778888888544
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.09 Score=46.74 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=56.6
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C-
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F- 179 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g- 179 (306)
...+.++..+.++...| .+.|+|.|||.-+-.. |+ +--. ..+++.+++.+++||.+=+|+ |
T Consensus 39 ~~~lEvc~~s~~~a~~A---~~gGAdRIELc~~l~~--------GG-lTPS----~g~i~~a~~~~~ipV~vMIRPRgGd 102 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNA---ERGGADRIELCSGLSE--------GG-TTPS----MGVLQVVKQSVQIPVFVMIRPRGGD 102 (287)
T ss_dssp CSEEEEEESSHHHHHHH---HHHTCSEEEECBCGGG--------TC-BCCC----HHHHHHHHTTCCSCEEEECCSSSSC
T ss_pred CceEEEEeCCHHHHHHH---HHhCCCEEEECCCCCC--------CC-CCCC----HHHHHHHHHhcCCCeEEEEecCCCC
Confidence 46677777776544322 2359999999622111 11 1111 235667777788999988886 2
Q ss_pred --CChH---HHHHHHHHHHHcCCcEEEEcccCC
Q psy4398 180 --HNEA---DTIALCKRLEACGIIAIGVHGRTK 207 (306)
Q Consensus 180 --~~~~---~~~~~a~~l~~~G~d~i~v~~~~~ 207 (306)
.+.. ...+-++.+.++|+|+|++..-+.
T Consensus 103 F~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~ 135 (287)
T 3iwp_A 103 FLYSDREIEVMKADIRLAKLYGADGLVFGALTE 135 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCT
T ss_pred cccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCC
Confidence 2323 356777888899999999976443
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.36 Score=44.41 Aligned_cols=149 Identities=9% Similarity=0.023 Sum_probs=98.2
Q ss_pred CceEEEecC--CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEe
Q psy4398 102 NKIILQIGT--ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKI 176 (306)
Q Consensus 102 ~p~ivql~g--~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKi 176 (306)
.|+...++. .+++++.+.++.+ ++||..+-+.+|. +++.-.+.++++|+.++ +.+.+..
T Consensus 132 vp~~~~~g~~~~~~~~~~~~a~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~a~g~~~~l~vDa 195 (372)
T 3cyj_A 132 VPVYGSGGFTSYPLRRLQEQLGGWAAAGIPRVKMKVGR----------------EPEKDPERVRAAREAIGESVELMVDA 195 (372)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHTTCCEEEEECCS----------------SGGGHHHHHHHHHHHHCTTSEEEEEC
T ss_pred ceEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 455444422 2456666655544 5699999997542 33444567777777763 5566666
Q ss_pred ccCCChHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHhhhhh
Q psy4398 177 RVFHNEADTIALCKRLEAC-GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK--IPVIANGGSKEIVDYGGVFSLNCAF 253 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~-G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~--ipvia~GGI~s~~~~~~~l~~~v~v 253 (306)
..+|+.+++.++++.+++. ++.+|- ++. .+.+++-.+++++.++ +||.+-=.+.+..+++++ ...+
T Consensus 196 N~~~~~~~a~~~~~~l~~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~-~~a~-- 264 (372)
T 3cyj_A 196 NGAYTRKQALYWAGAFAREAGISYLE-------EPV-SSEDREGLRLLRDRGPGGVAIAAGEYEWTLPQLHDL-AGCV-- 264 (372)
T ss_dssp TTCSCHHHHHHHHHHHHHHHCCCEEE-------CSS-CTTCHHHHHHHHHHSCTTCEEEECTTCCSHHHHHHH-HTTC--
T ss_pred CCCCCHHHHHHHHHHHHhhcCCcEEE-------CCC-CcccHHHHHHHHHhCCCCCCEECCCCccCHHHHHHH-hCCC--
Confidence 6679999999999999999 888773 222 2458889999999987 799887778888888776 3211
Q ss_pred ccccCCCC-CchH----HHHHHHHHhcCCC
Q psy4398 254 LRNHYPVE-KLPK----TILYAHCKYKRFE 278 (306)
Q Consensus 254 Grall~~p-~~~~----~~l~~~~~~~g~~ 278 (306)
..+.-++ .+.- +.+.+..+++|++
T Consensus 265 -d~i~ik~~~~GGit~~~~i~~~A~~~gi~ 293 (372)
T 3cyj_A 265 -DILQADVTRCGGITGLLRVDGICRGHQIP 293 (372)
T ss_dssp -SEEEECTTTTTHHHHHTTHHHHHHHHTCC
T ss_pred -CEEecCchhhCCHHHHHHHHHHHHHcCCe
Confidence 1111233 2211 2666778888887
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.049 Score=46.68 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=44.5
Q ss_pred HHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH---hcccccEEEEecc--C---CChHH---HHHHH
Q psy4398 122 KVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI---SNLSIPVSCKIRV--F---HNEAD---TIALC 189 (306)
Q Consensus 122 ~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~---~~~~~pv~vKir~--g---~~~~~---~~~~a 189 (306)
.+++ |+|.|||+-+-. -|+ + .|. ..+++.++ +.+++||.|=+|+ | .+.++ ..+-+
T Consensus 16 ~A~~~GAdRIELc~~L~--------~GG-l--TPS--~g~i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di 82 (224)
T 2bdq_A 16 RLDKAIISRVELCDNLA--------VGG-T--TPS--YGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDI 82 (224)
T ss_dssp GCCTTTCCEEEEEBCGG--------GTC-B--CCC--HHHHHHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEcCCcc--------cCC-c--CCC--HHHHHHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHHHHH
Confidence 3444 999999963211 111 1 111 12334444 6678999999987 2 23333 56667
Q ss_pred HHHHHcCCcEEEEcccCC
Q psy4398 190 KRLEACGIIAIGVHGRTK 207 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~ 207 (306)
+.+.++|+|++++-.-+.
T Consensus 83 ~~~~~~GadGvV~G~Lt~ 100 (224)
T 2bdq_A 83 LRAVELESDALVLGILTS 100 (224)
T ss_dssp HHHHHTTCSEEEECCBCT
T ss_pred HHHHHcCCCEEEEeeECC
Confidence 788899999999855443
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.17 Score=48.27 Aligned_cols=145 Identities=12% Similarity=0.099 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHH-h-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKV-E-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~-~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~ 186 (306)
+.+++++++.++.+ + +||..+-+.+|.+. ++.-.+.++++|+++ ++.+.+-...+|+.+++.
T Consensus 198 ~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~---------------~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai 262 (470)
T 3p0w_A 198 AMTPAAIARLAEAATERYGFADFKLKGGVMP---------------GAEEMEAIAAIKARFPHARVTLDPNGAWSLNEAI 262 (470)
T ss_dssp BCSHHHHHHHHHHHHHHHCCSEEEEECSSSC---------------HHHHHHHHHHHHHHCTTSEEEEECTTBBCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC---------------HHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHH
Confidence 35788888877754 5 49999999876422 223345678888876 345666655579999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCc----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNR----IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVE 261 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~----~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p 261 (306)
++++.+++. +.+|- ++. .+.+ ++..+++++.+++||.+.=-+.+..++.++++.+. .+ +.-++
T Consensus 263 ~~~~~Le~~-l~~iE-------eP~-~~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~di---v~~d~ 330 (470)
T 3p0w_A 263 ALCKGQGHL-VAYAE-------DPC-GPEAGYSGREVMAEFKRATGIPTATNMIATDWRQMGHAVQLHAVDI---PLADP 330 (470)
T ss_dssp HHHTTCTTT-CSEEE-------SCB-CCBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHTTCCSE---EBCCH
T ss_pred HHHHhcccc-ceeec-------CCC-ChhhccchHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCE---EEecC
Confidence 999999876 66552 222 2233 67889999999999987555777888888887532 11 11111
Q ss_pred ----CchHHHHHHHHHhcCCCCCc
Q psy4398 262 ----KLPKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 262 ----~~~~~~l~~~~~~~g~~~~~ 281 (306)
...-..+.+..+++|++..+
T Consensus 331 ~~GGit~a~kia~lA~a~gv~~~~ 354 (470)
T 3p0w_A 331 HFWTMQGSVRVAQLCDEWGLTWGS 354 (470)
T ss_dssp HHHCHHHHHHHHHHHHHHTCCCBC
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEe
Confidence 01113666777788887443
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.03 Score=49.72 Aligned_cols=86 Identities=9% Similarity=-0.016 Sum_probs=57.5
Q ss_pred HHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-----CCc
Q psy4398 158 CNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-----KIP 230 (306)
Q Consensus 158 ~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-----~ip 230 (306)
.+-++++++..+ .++.+-+. +.+ -++.+.++|+|+|-++.. ..+.++++++.+ ++|
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev~---tle----e~~~A~~aGaD~I~ld~~----------~~~~l~~~v~~l~~~~~~~~ 231 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIECE---SFE----EAKNAMNAGADIVMCDNL----------SVLETKEIAAYRDAHYPFVL 231 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEES---SHH----HHHHHHHHTCSEEEEETC----------CHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHhCCCCceEEEEcC---CHH----HHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCcE
Confidence 566777777764 34555443 222 233444689999998742 235555444443 389
Q ss_pred EEEecCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 231 VIANGGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 231 via~GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
|.++||| +.+++.++++.|+ .+|+.++.-|
T Consensus 232 i~AsGGI-~~~ni~~~~~aGaD~i~vGs~i~~a~ 264 (273)
T 2b7n_A 232 LEASGNI-SLESINAYAKSGVDAISVGALIHQAT 264 (273)
T ss_dssp EEEESSC-CTTTHHHHHTTTCSEEECTHHHHTCC
T ss_pred EEEECCC-CHHHHHHHHHcCCcEEEEcHHhcCCC
Confidence 9999999 7999999998876 7788766544
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.43 Score=42.77 Aligned_cols=122 Identities=18% Similarity=0.212 Sum_probs=75.0
Q ss_pred CCceEEEec-C-CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCc-cccccCChHHHHHHHHHHHhcc---cccEE
Q psy4398 101 KNKIILQIG-T-ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGM-GAALLSTPDIACNILTTLISNL---SIPVS 173 (306)
Q Consensus 101 ~~p~ivql~-g-~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~-G~~l~~~~~~~~eiv~~v~~~~---~~pv~ 173 (306)
..|+++-+- | .++++..+.++.+. .|+.+|.|.=.... + +.+.. |..+. ..+...+=|++.+++. +.++.
T Consensus 80 ~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iEDq~~~-K-rcgh~~gk~l~-~~~e~~~rI~Aa~~A~~~~~~d~~ 156 (302)
T 3fa4_A 80 STPVIADADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQT-K-RCGHLAGKILV-DTDTYVTRIRAAVQARQRIGSDIV 156 (302)
T ss_dssp TSCEEEECTTTTSSHHHHHHHHHHHHHTTCCEEEECSBCCC---------CCCBC-CHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCC-c-ccCCCCCCeec-CHHHHHHHHHHHHHHHHhcCCCEE
Confidence 578888873 2 36777888888765 59999999644211 1 11111 22232 2333333333443332 44444
Q ss_pred EEecc----CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEe
Q psy4398 174 CKIRV----FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIAN 234 (306)
Q Consensus 174 vKir~----g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~ 234 (306)
+=-|. ....+++++=++...++|+|.|-+++. .+.+.++++.+.+ +.|+.+|
T Consensus 157 I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g~---------~~~~ei~~~~~~~~~~Pl~~n 213 (302)
T 3fa4_A 157 VIARTDSLQTHGYEESVARLRAARDAGADVGFLEGI---------TSREMARQVIQDLAGWPLLLN 213 (302)
T ss_dssp EEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETTC---------CCHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEecccccCCHHHHHHHHHHHHHcCCCEEeecCC---------CCHHHHHHHHHHhcCCceeEE
Confidence 44443 234677888899999999999998763 2557889999988 5898775
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.25 Score=43.34 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=67.8
Q ss_pred CCc-eEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEec
Q psy4398 101 KNK-IILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIR 177 (306)
Q Consensus 101 ~~p-~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir 177 (306)
|.| +++.|.+.+.++..+-++.+. .|+|.||+- -|-+.. ..+.+.+.+.+..+++.+ +.|+.+-+|
T Consensus 18 g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR---------~D~l~~--~~~~~~v~~~l~~lr~~~~~lPiI~T~R 86 (258)
T 4h3d_A 18 GRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWR---------VDFFEN--VENIKEVKEVLYELRSYIHDIPLLFTFR 86 (258)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEE---------GGGCTT--TTCHHHHHHHHHHHHHHCTTSCEEEECC
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEe---------eccccc--cCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 445 788999999999888777776 499999994 332211 135678889999998876 689999998
Q ss_pred c----C---CChHHHHHHHHHHHHcC-CcEEEEc
Q psy4398 178 V----F---HNEADTIALCKRLEACG-IIAIGVH 203 (306)
Q Consensus 178 ~----g---~~~~~~~~~a~~l~~~G-~d~i~v~ 203 (306)
. | .+.++..++.+.+.+.| +|+|.+-
T Consensus 87 t~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvE 120 (258)
T 4h3d_A 87 SVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVE 120 (258)
T ss_dssp CGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred chhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHh
Confidence 6 2 23455677777777776 8999874
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.46 Score=43.47 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=84.0
Q ss_pred eEEEecC---CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCC--c-----cccc-------cCChHHHHHHHHHHH
Q psy4398 104 IILQIGT---ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGG--M-----GAAL-------LSTPDIACNILTTLI 165 (306)
Q Consensus 104 ~ivql~g---~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~--~-----G~~l-------~~~~~~~~eiv~~v~ 165 (306)
+|.-++. .+.+...+.++.+++ |+|+|-+..-.|.+....+. | |..+ .-..+.. +.+....
T Consensus 22 iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~-~~L~~~~ 100 (349)
T 2wqp_A 22 IICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDE-IKLKEYV 100 (349)
T ss_dssp EEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHH-HHHHHHH
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHH-HHHHHHH
Confidence 5555653 356777777777765 99999997665533111111 1 1111 1122333 3444445
Q ss_pred hcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 166 SNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 166 ~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
+..+++++.-.= +.+ .+ +.+++.|+|.+-|..+.. .|+++++.+.+ ++.|||.+-|..|++++..
T Consensus 101 ~~~Gi~~~st~~---d~~-sv---d~l~~~~v~~~KI~S~~~-------~n~~LL~~va~-~gkPviLstGmat~~Ei~~ 165 (349)
T 2wqp_A 101 ESKGMIFISTLF---SRA-AA---LRLQRMDIPAYKIGSGEC-------NNYPLIKLVAS-FGKPIILSTGMNSIESIKK 165 (349)
T ss_dssp HHTTCEEEEEEC---SHH-HH---HHHHHHTCSCEEECGGGT-------TCHHHHHHHHT-TCSCEEEECTTCCHHHHHH
T ss_pred HHhCCeEEEeeC---CHH-HH---HHHHhcCCCEEEECcccc-------cCHHHHHHHHh-cCCeEEEECCCCCHHHHHH
Confidence 556777654433 322 33 445678999999976643 48899999986 5899999999999999999
Q ss_pred HHHhhh
Q psy4398 246 VFSLNC 251 (306)
Q Consensus 246 ~l~~~v 251 (306)
+++...
T Consensus 166 Ave~i~ 171 (349)
T 2wqp_A 166 SVEIIR 171 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888744
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.15 Score=44.57 Aligned_cols=92 Identities=10% Similarity=0.133 Sum_probs=64.9
Q ss_pred HHHHhcccccEEEEecc-----CC-ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEec
Q psy4398 162 TTLISNLSIPVSCKIRV-----FH-NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235 (306)
Q Consensus 162 ~~v~~~~~~pv~vKir~-----g~-~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~G 235 (306)
+++++. +.+++.-+.. |+ ...+..++|+.++++|+++|++-. -...+.+ ..+.++.+++.+++||+.-+
T Consensus 39 ~al~~~-~~~~IaE~k~aSPskg~i~~~~p~~~A~~~~~~GA~~isvlt--~~~~f~G--~~~~l~~i~~~v~lPvl~kd 113 (254)
T 1vc4_A 39 EALLRP-GLSVIAEVKRQSPSEGLIREVDPVEAALAYARGGARAVSVLT--EPHRFGG--SLLDLKRVREAVDLPLLRKD 113 (254)
T ss_dssp HHHTSS-SCEEEEEECSCCTTTCCCCSCCHHHHHHHHHHTTCSEEEEEC--CCSSSCC--CHHHHHHHHHHCCSCEEEES
T ss_pred HHHhhc-CCcEEeeecCCCcCCCcCCCCCHHHHHHHHHHcCCCEEEEec--chhhhcc--CHHHHHHHHHhcCCCEEECC
Confidence 344432 5667764432 32 115689999999999999999832 1222222 56888999999999999999
Q ss_pred CCCCHHHHHHHHHhhh---hhccccC
Q psy4398 236 GSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 236 GI~s~~~~~~~l~~~v---~vGrall 258 (306)
+|.+..+...+.+.|+ .++.+.+
T Consensus 114 fI~d~~qi~~a~~~GAD~VlL~~~~l 139 (254)
T 1vc4_A 114 FVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp CCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred cCCCHHHHHHHHHcCCCEEEECccch
Confidence 9999999988887754 5555544
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.55 Score=40.30 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC-C----ChHHH
Q psy4398 112 DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF-H----NEADT 185 (306)
Q Consensus 112 ~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g-~----~~~~~ 185 (306)
++....+.|+.+++ |+.+|..+ . .+-++++|+.++.|++-..+.. . -....
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~~-------------------~----~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~ 90 (229)
T 3q58_A 34 KPEIVAAMAQAAASAGAVAVRIE-------------------G----IENLRTVRPHLSVPIIGIIKRDLTGSPVRITPY 90 (229)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE-------------------S----HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCS
T ss_pred CcchHHHHHHHHHHCCCcEEEEC-------------------C----HHHHHHHHHhcCCCEEEEEeecCCCCceEeCcc
Confidence 46778888887765 99999873 0 2457889999999987433321 0 11112
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCCCCCc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhc
Q psy4398 186 IALCKRLEACGIIAIGVHGRTKAERPRHRNR-IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFL 254 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~-~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vG 254 (306)
.+-++.+.++|+|.|.+...... .|.. -++++.+++. ++++++ .+.+.++++.+.+.|+ .+|
T Consensus 91 ~~~i~~~~~aGad~I~l~~~~~~----~p~~l~~~i~~~~~~-g~~v~~--~v~t~eea~~a~~~Gad~Ig 154 (229)
T 3q58_A 91 LQDVDALAQAGADIIAFDASFRS----RPVDIDSLLTRIRLH-GLLAMA--DCSTVNEGISCHQKGIEFIG 154 (229)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHHT-TCEEEE--ECSSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHcCCCEEEECccccC----ChHHHHHHHHHHHHC-CCEEEE--ecCCHHHHHHHHhCCCCEEE
Confidence 33456678899999987654221 1222 3566777654 677665 6789999999988876 454
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.088 Score=46.64 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.++++|+++|++-.- ...+. ..++.+.++++.+++||+.-+.|.|..++.++...|+ .++.+.+.
T Consensus 79 ~dp~~~A~~y~~~GA~~IsVltd--~~~f~--Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~ 154 (272)
T 3tsm_A 79 FDPPALAKAYEEGGAACLSVLTD--TPSFQ--GAPEFLTAARQACSLPALRKDFLFDPYQVYEARSWGADCILIIMASVD 154 (272)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECC--STTTC--CCHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTSC
T ss_pred CCHHHHHHHHHHCCCCEEEEecc--ccccC--CCHHHHHHHHHhcCCCEEECCccCCHHHHHHHHHcCCCEEEEcccccC
Confidence 35889999999999999987431 11222 2678999999999999999999999999999888765 55655553
Q ss_pred CCCchH-HHHHHHHHhcCCC-CCcceeh
Q psy4398 260 VEKLPK-TILYAHCKYKRFE-VPKYETV 285 (306)
Q Consensus 260 ~p~~~~-~~l~~~~~~~g~~-~~~~~~~ 285 (306)
+ .. .++-+...+.|+. +.+.|+.
T Consensus 155 ~---~~l~~l~~~a~~lGl~~lvevh~~ 179 (272)
T 3tsm_A 155 D---DLAKELEDTAFALGMDALIEVHDE 179 (272)
T ss_dssp H---HHHHHHHHHHHHTTCEEEEEECSH
T ss_pred H---HHHHHHHHHHHHcCCeEEEEeCCH
Confidence 1 22 2566667777876 4444443
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.14 Score=47.46 Aligned_cols=120 Identities=13% Similarity=0.195 Sum_probs=85.1
Q ss_pred ceEEEec-CCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccC
Q psy4398 103 KIILQIG-TADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVF 179 (306)
Q Consensus 103 p~ivql~-g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g 179 (306)
|+-..++ +.+++++.+.++.+ ++||..+-+.++ |. .+. +.++++|+.+ ++.+.+-...+
T Consensus 151 ~~~~~~g~~~~~~~~~~~a~~~~~~G~~~~KiKvg-~~-------------~d~----~~v~avr~a~~~~~l~vDaN~~ 212 (386)
T 1wue_A 151 PVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIR-PG-------------YDV----EPVALIRQHFPNLPLMVDANSA 212 (386)
T ss_dssp ECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECB-TT-------------BSH----HHHHHHHHHCTTSCEEEECTTC
T ss_pred EeeEEecCCCCHHHHHHHHHHHHHhhhheEEEeeC-cH-------------HHH----HHHHHHHHhCCCCeEEEeCCCC
Confidence 3333443 34688887766654 569999998754 21 233 4467777765 34566665667
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
|+.+++ ++++.+++.++.+|- ++. .+.+++-.+++++.+++||.+-=.+.+..+++++++.
T Consensus 213 ~~~~~a-~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~ 273 (386)
T 1wue_A 213 YTLADL-PQLQRLDHYQLAMIE-------QPF-AADDFLDHAQLQRELKTRICLDENIRSLKDCQVALAL 273 (386)
T ss_dssp CCGGGH-HHHHGGGGSCCSCEE-------CCS-CTTCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhCCCeEEe-------CCC-CcccHHHHHHHHHhcCCCEEeCCccCCHHHHHHHHHc
Confidence 888888 899999998887764 222 2457888899999999999888788899999988865
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.076 Score=48.27 Aligned_cols=122 Identities=9% Similarity=0.131 Sum_probs=73.8
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccC
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVF 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g 179 (306)
.|+...+...++++..+.++ ++||..+-+.++.+ |..+..+ .+.++++|+.++ ..+.+-...+
T Consensus 70 v~~~~ti~~~~~e~~~~~~~--~~G~~~~KiKvg~~---------g~~~~~d----~~~v~avR~~~G~~~~L~vDaN~~ 134 (327)
T 2opj_A 70 VPVNATVPAVGPEEAARIVA--SSGCTTAKVKVAER---------GQSEAND----VARVEAVRDALGPRGRVRIDVNGA 134 (327)
T ss_dssp EEBCEEECSCCHHHHHHHHH--HHCCSEEEEECCC---------------CH----HHHHHHHHHHHCTTSEEEEECTTC
T ss_pred eEEeEEeCCCCHHHHHHHHH--HCCCCEEEEEeCCC---------CCCHHHH----HHHHHHHHHHhCCCCEEEEECCCC
Confidence 34445566667776544433 46999999987643 1112222 456778887763 4566666667
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
|+.+++.++++.|++.++.+|- ++. + +++..+++++.+++||.+-=.+.+..++.++++
T Consensus 135 w~~~~A~~~~~~L~~~~l~~iE-------qP~--~-~~~~~~~l~~~~~iPIa~dEs~~~~~~~~~~i~ 193 (327)
T 2opj_A 135 WDVDTAVRMIRLLDRFELEYVE-------QPC--A-TVDELAEVRRRVSVPIAADESIRRAEDPLRVRD 193 (327)
T ss_dssp SCHHHHHHHHHHHGGGCEEEEE-------CCS--S-SHHHHHHHHHHCSSCEEC-----------CTTT
T ss_pred CCHHHHHHHHHHHHhcCCcEEe-------CCC--C-CHHHHHHHHhhCCCCEEcCCCCCCHHHHHHHHH
Confidence 9999999999999998876553 222 1 467788999999999987777777777666554
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.017 Score=48.18 Aligned_cols=87 Identities=13% Similarity=-0.035 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcccccEEEEecc--CCC-hHHHHHHHHHHHHcCCcEEEEcccC---------------------------
Q psy4398 157 ACNILTTLISNLSIPVSCKIRV--FHN-EADTIALCKRLEACGIIAIGVHGRT--------------------------- 206 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~--g~~-~~~~~~~a~~l~~~G~d~i~v~~~~--------------------------- 206 (306)
+.++++.++++ ++|+++=+.. |.. .++.+++. +..++|+|+-+-..
T Consensus 45 L~~iv~~ik~~-gK~vivh~DlI~GLs~d~~ai~fL---~~~~pdGIIsTk~~~i~~Akk~GL~tIqR~FliDs~al~~~ 120 (188)
T 1vkf_A 45 LKFHLKILKDR-GKTVFVDMDFVNGLGEGEEAILFV---KKAGADGIITIKPKNYVVAKKNGIPAVLRFFALDSKAVERG 120 (188)
T ss_dssp HHHHHHHHHHT-TCEEEEEGGGEETCCSSHHHHHHH---HHHTCSEEEESCHHHHHHHHHTTCCEEEEEECCSHHHHHHH
T ss_pred HHHHHHHHHHC-CCeEEEecCcccccCCCHHHHHHH---HhcCCCEEEcCcHHHHHHHHHcCCEEeeEEEEEEeHHHhhh
Confidence 78899999888 9999988775 332 24566665 66788888632100
Q ss_pred ------CCC----CCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 207 ------KAE----RPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 207 ------~~~----~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+. -..++..-+.++++ +++|+|+.|+|+|.+++++ +++|+
T Consensus 121 ~~~I~~~kPD~iEiLPg~v~p~~I~~v---~~~PiIaGGlI~t~edv~~-l~aGA 171 (188)
T 1vkf_A 121 IEQIETLGVDVVEVLPGAVAPKVARKI---PGRTVIAAGLVETEEEARE-ILKHV 171 (188)
T ss_dssp HHHHHHHTCSEEEEESGGGHHHHHTTS---TTSEEEEESCCCSHHHHHH-HTTTS
T ss_pred hhhccccCCCeEeecCCCchHHHHHHh---cCCCEEEECCcCCHHHHHH-HHCCC
Confidence 000 01122123444555 6899999999999999999 99876
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.48 Score=43.88 Aligned_cols=133 Identities=13% Similarity=0.167 Sum_probs=83.0
Q ss_pred ceEEEecC---CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccC--------Cccccc-------cCChHHHHHHHHH
Q psy4398 103 KIILQIGT---ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTG--------GMGAAL-------LSTPDIACNILTT 163 (306)
Q Consensus 103 p~ivql~g---~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~--------~~G~~l-------~~~~~~~~eiv~~ 163 (306)
-+|.-++. .+.+...+.++.+++ |+|+|-+..-.|.+....+ ++|..+ +-..+...+ +..
T Consensus 30 ~IIAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~-L~~ 108 (385)
T 1vli_A 30 FIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILP-LLD 108 (385)
T ss_dssp EEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHH-HHH
T ss_pred EEEEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHH-HHH
Confidence 35555643 356666777776764 9999999776654421111 122111 112233333 344
Q ss_pred HHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHH
Q psy4398 164 LISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDY 243 (306)
Q Consensus 164 v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~ 243 (306)
..+..+++++.-. ++ .+.+ +.+++.|+|.+-|..+.. .|+++++.+.+ ++.|||.+-|..|++++
T Consensus 109 ~~~~~Gi~~~stp---fD-~~sv---d~l~~~~vd~~KIgS~~~-------~N~pLL~~va~-~gKPViLStGmaTl~Ei 173 (385)
T 1vli_A 109 YCREKQVIFLSTV---CD-EGSA---DLLQSTSPSAFKIASYEI-------NHLPLLKYVAR-LNRPMIFSTAGAEISDV 173 (385)
T ss_dssp HHHHTTCEEECBC---CS-HHHH---HHHHTTCCSCEEECGGGT-------TCHHHHHHHHT-TCSCEEEECTTCCHHHH
T ss_pred HHHHcCCcEEEcc---CC-HHHH---HHHHhcCCCEEEECcccc-------cCHHHHHHHHh-cCCeEEEECCCCCHHHH
Confidence 4445576654321 23 2233 445678999999876642 48899999986 58999999999999999
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
..+++...
T Consensus 174 ~~Ave~i~ 181 (385)
T 1vli_A 174 HEAWRTIR 181 (385)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
|
| >3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.45 Score=43.51 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=89.2
Q ss_pred CCCCCceEEEecCCCHH---HHHH-----HHHHHh----cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH
Q psy4398 98 PREKNKIILQIGTADPE---RALE-----AAKKVE----HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI 165 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~---~~~~-----aa~~~~----~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~ 165 (306)
++.+.|+++++-+.... .|.+ ..+.++ .||.-|.+..|. -.++++.+...++++...
T Consensus 84 ~~~~VPVaLHlDHg~~~~ld~~~~~~l~~~~~~i~~~i~~GFtSVMiDgS~-----------lp~eENi~~Tk~vv~~ah 152 (349)
T 3elf_A 84 AKYPVNVALHTDHCPKDKLDSYVRPLLAISAQRVSKGGNPLFQSHMWDGSA-----------VPIDENLAIAQELLKAAA 152 (349)
T ss_dssp TTSSSCEEEEECCCCGGGGGGTHHHHHHHHHHHHHTTCCCSCSEEEECCTT-----------SCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEECCCCCCcccchhhhhhHHHHHHHHHHHhhcCCCEEEecCCC-----------CCHHHHHHHHHHHHHHHH
Confidence 34578999999876532 2222 122222 379999996553 134567788888888775
Q ss_pred hcccccEEEEecc-CCC------------hHHHHHHHHHHHHcC-----CcEEEEcccCCCCCCC-C--CCcHHHHHHHH
Q psy4398 166 SNLSIPVSCKIRV-FHN------------EADTIALCKRLEACG-----IIAIGVHGRTKAERPR-H--RNRIEMIRTLT 224 (306)
Q Consensus 166 ~~~~~pv~vKir~-g~~------------~~~~~~~a~~l~~~G-----~d~i~v~~~~~~~~~~-~--p~~~~~v~~i~ 224 (306)
+ .++.|-.-+.. |.. ..+..+..+.+++.| +|.|-+.=.+.-+.|. + ..+++.+++|+
T Consensus 153 ~-~gvsVEaElG~iGG~Edgv~~~~~~~~yT~Peea~~Fv~~tg~~~~gvD~LAvaiGt~HG~Yk~g~p~L~~~~L~~I~ 231 (349)
T 3elf_A 153 A-AKIILEIEIGVVGGEEDGVANEINEKLYTSPEDFEKTIEALGAGEHGKYLLAATFGNVHGVYKPGNVKLRPDILAQGQ 231 (349)
T ss_dssp H-TTCEEEEEESCCBC-------------CCCHHHHHHHHHHHTTSTTSCEEEEECSSCBSSCCCTTSSCCCTHHHHHHH
T ss_pred H-cCCeEEEEeeccccccCCcccccccccCCCHHHHHHHHHHhCCCCCCceEEEEecCCcccCCCCCCCccCHHHHHHHH
Confidence 5 36666666553 110 012334444445556 8999875444444443 1 34788888888
Q ss_pred hhC-----------CCcEEEecCCCC-HHHHHHHHHhhh
Q psy4398 225 QHL-----------KIPVIANGGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 225 ~~~-----------~ipvia~GGI~s-~~~~~~~l~~~v 251 (306)
+.+ ++|++.-||-.+ .++.+++++.|+
T Consensus 232 ~~v~~~~~~~~~~~~vpLVlHGgSG~p~e~i~~ai~~GV 270 (349)
T 3elf_A 232 QVAAAKLGLPADAKPFDFVFHGGSGSLKSEIEEALRYGV 270 (349)
T ss_dssp HHHHHHHTCCTTCCCCCEEECCCTTCCHHHHHHHHHTTE
T ss_pred HHHHhhcCCccccCCCcEEEeCCCCCCHHHHHHHHHcCC
Confidence 876 689999999765 457788888765
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.078 Score=47.57 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCcEEEEc-----ccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 186 IALCKRLEACGIIAIGVH-----GRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~-----~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.++|+..+++|+++|.+- .....+......++++++++++.+++||++-+++...++++.+.+.|+
T Consensus 31 ~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~aaGA 101 (297)
T 4adt_A 31 VEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEELKV 101 (297)
T ss_dssp HHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEETTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccCCcHHHHHHHHHcCC
Confidence 488999999999999875 222222211224789999999999999999988888999998888776
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.33 Score=41.36 Aligned_cols=121 Identities=9% Similarity=0.032 Sum_probs=72.8
Q ss_pred HHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcE
Q psy4398 121 KKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIA 199 (306)
Q Consensus 121 ~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~ 199 (306)
..+. .|+|+|-|..+- |+- ..+.+.+.++..++. +..+.+=+. ...+ .+.+.+.|.+.
T Consensus 76 ~~~~~~Gad~Vll~~se-----r~l--------~~~e~~~~~~~a~~~-Gl~~iv~v~--~~~e-----~~~~~~~~~~~ 134 (219)
T 2h6r_A 76 EAIKDCGCKGTLINHSE-----KRM--------LLADIEAVINKCKNL-GLETIVCTN--NINT-----SKAVAALSPDC 134 (219)
T ss_dssp HHHHHHTCCEEEESBTT-----BCC--------BHHHHHHHHHHHHHH-TCEEEEEES--SSHH-----HHHHTTTCCSE
T ss_pred HHHHHcCCCEEEECCcc-----ccC--------CHHHHHHHHHHHHHC-CCeEEEEeC--CchH-----HHHHHhCCCCE
Confidence 3344 499999994220 000 112356666666543 666666666 3322 24455678888
Q ss_pred EEEcccCCC--C---CCCCCCcH-HHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCC
Q psy4398 200 IGVHGRTKA--E---RPRHRNRI-EMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEK 262 (306)
Q Consensus 200 i~v~~~~~~--~---~~~~p~~~-~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~ 262 (306)
|-+..+..- + ....+..+ ...+.+++.. ++||++-|||++.++++.+.+. ++.+|++++.-+.
T Consensus 135 i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d 207 (219)
T 2h6r_A 135 IAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKN 207 (219)
T ss_dssp EEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSS
T ss_pred EEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCccc
Confidence 888876531 1 11112223 3445556555 7999999999999999998876 4599999986443
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.27 Score=44.00 Aligned_cols=133 Identities=7% Similarity=0.057 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C------CCh
Q psy4398 111 ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F------HNE 182 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g------~~~ 182 (306)
.+.+++..+ ++.|++.|.+-.++-. ...+...+-...+..+.+.++++..++. +..|.+-+.. + .++
T Consensus 84 ~~~~~i~~a---~~aG~~~v~i~~~~s~-~~~~~~~~~s~ee~l~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~~~~~~~ 158 (302)
T 2ftp_A 84 PNLKGFEAA---LESGVKEVAVFAAASE-AFSQRNINCSIKDSLERFVPVLEAARQH-QVRVRGYISCVLGCPYDGDVDP 158 (302)
T ss_dssp CSHHHHHHH---HHTTCCEEEEEEESCH-HHHHHHHSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECTTCBTTTBCCCH
T ss_pred CCHHHHHHH---HhCCcCEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEEEeeCCcCCCCCH
Confidence 455444333 3359999888444311 1112223334555667777777777664 5555444432 1 356
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC-CCcEEEec--CCCC-HHHHHHHHHhhh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL-KIPVIANG--GSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~-~ipvia~G--GI~s-~~~~~~~l~~~v 251 (306)
+...++++.+.+.|+|.|.+.+.... ..| ...++++.+++.+ ++|+-..+ +-.- ..+...+++.|+
T Consensus 159 ~~~~~~~~~~~~~G~d~i~l~DT~G~---~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa 229 (302)
T 2ftp_A 159 RQVAWVARELQQMGCYEVSLGDTIGV---GTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGI 229 (302)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESSSC---CCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCC---cCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCC
Confidence 77999999999999999998744321 223 2467889999998 68988876 4332 455666677765
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.27 Score=46.74 Aligned_cols=144 Identities=12% Similarity=0.117 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHH-h-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-E-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~ 187 (306)
.+++++++.++.+ + .||..+-+.+|.+. ++.-.+.++++|++. +..+.+-...+|+.+++.+
T Consensus 184 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~---------------~~~Di~~v~avRea~pd~~L~vDaN~~w~~~~A~~ 248 (455)
T 3pfr_A 184 MDTQAVIELAAASKDRYGFKDFKLKGGVFE---------------GSKEIDTVIELKKHFPDARITLDPNGCWSLDEAIQ 248 (455)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSSSC---------------HHHHHHHHHHHHHHCTTCCEEEECTTBSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCCC---------------HHHHHHHHHHHHHhCCCCeEeecCCCCCCHHHHHH
Confidence 5788888877754 4 49999999876422 222345678888876 4556666666799999999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCc----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCCC
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNR----IEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVEK 262 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~----~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p~ 262 (306)
+++.+++. +.+|- ++. .+.+ ++..+++++.+++||.+.=-+.+..++.++++.+. .+ +.-++.
T Consensus 249 ~~~~L~~~-l~~iE-------eP~-~~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~di---~~~d~~ 316 (455)
T 3pfr_A 249 LCKGLNDV-LTYAE-------DPC-IGENGYSGREIMAEFRRRTGIPTATNMIATNWREMCHAIMLQSVDI---PLADPH 316 (455)
T ss_dssp HHTTCTTT-CSEEE-------SCB-CCBTTBCHHHHHHHHHHHHCCCEEESSSCCSHHHHHHHHHHTCCSE---EBCCHH
T ss_pred HHHhhccc-ceeee-------cCC-ChhhccchHHHHHHHHhcCCCCEEeCCCcCCHHHHHHHHHcCCCCE---EEecCC
Confidence 99999877 66552 222 2223 68889999999999887545677888888887532 11 111220
Q ss_pred ---c-hHHHHHHHHHhcCCCCCc
Q psy4398 263 ---L-PKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 263 ---~-~~~~l~~~~~~~g~~~~~ 281 (306)
+ .-+.+.+..+++|++..+
T Consensus 317 ~GGit~a~kia~lA~a~gv~~~~ 339 (455)
T 3pfr_A 317 FWTLTGASRVAQLCNEWGLTWGC 339 (455)
T ss_dssp HHCHHHHHHHHHHHHHTTCCCBC
T ss_pred cCCHHHHHHHHHHHHHcCCEEEe
Confidence 1 113666777888887444
|
| >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.37 Score=42.20 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=68.2
Q ss_pred ceEEEecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc--
Q psy4398 103 KIILQIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV-- 178 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~-- 178 (306)
.+++.|.+.+.++..+.++.+ ..|+|.||+ |-|.+.. ..+.+.+.+.+..+++.+ +.|+.+=+|.
T Consensus 21 ~Icv~l~~~~~~e~~~~~~~~~~~~~D~vEl---------RvD~l~~--~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~ 89 (257)
T 2yr1_A 21 CICAPVVGEDDRKVLREAEEVCRKQPDLLEW---------RADFFRA--IDDQERVLATANGLRNIAGEIPILFTIRSER 89 (257)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHSCCSEEEE---------EGGGCTT--TTCHHHHHHHHHHHHHHSSSCCEEEECCCTT
T ss_pred EEEEEecCCCHHHHHHHHHHHhhcCCCEEEE---------Eeecccc--cCcHHHHHHHHHHHHHhccCCCEEEEEeecc
Confidence 488899999999987666664 459999999 4343321 124677888999999887 7899998885
Q ss_pred --C----CChHHHHHHHHHHHHcC-CcEEEEcc
Q psy4398 179 --F----HNEADTIALCKRLEACG-IIAIGVHG 204 (306)
Q Consensus 179 --g----~~~~~~~~~a~~l~~~G-~d~i~v~~ 204 (306)
| .+.++..++.+.+.+.| +|+|.|.-
T Consensus 90 eGG~~~~~~~~~~~~ll~~~~~~g~~d~iDvEl 122 (257)
T 2yr1_A 90 EGGQPIPLNEAEVRRLIEAICRSGAIDLVDYEL 122 (257)
T ss_dssp TTCCCCSSCHHHHHHHHHHHHHHTCCSEEEEEG
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 1 13455778888888888 99999853
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.71 Score=40.48 Aligned_cols=125 Identities=9% Similarity=0.113 Sum_probs=84.5
Q ss_pred ceEE-EecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC
Q psy4398 103 KIIL-QIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF 179 (306)
Q Consensus 103 p~iv-ql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 179 (306)
+++| ..++ .+.+...+.++.+++ |++.|-...--|.+.. .+|-+ + - +.-.+.++.+++..++|+..-+-
T Consensus 24 ~~vIAgpc~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~--~~~~g-~--~-~egl~~l~~~~~~~Gl~~~te~~-- 95 (262)
T 1zco_A 24 FTIIAGPCSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSP--YSFQG-Y--G-EKALRWMREAADEYGLVTVTEVM-- 95 (262)
T ss_dssp CEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSST--TSCCC-C--T-HHHHHHHHHHHHHHTCEEEEECC--
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCc--ccccC-c--c-HHHHHHHHHHHHHcCCcEEEeeC--
Confidence 4444 3543 367888888888875 9999988766664321 11211 1 1 33344556666777888887655
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC-CHHHHHHHHHh
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK-EIVDYGGVFSL 249 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~-s~~~~~~~l~~ 249 (306)
+... ++.+++. +|.+-|.+++. .++++++++.+ ++.||+..-|.. +++++.++++.
T Consensus 96 -d~~~----~~~l~~~-vd~~kIga~~~-------~n~~ll~~~a~-~~kPV~lk~G~~~t~~e~~~Av~~ 152 (262)
T 1zco_A 96 -DTRH----VELVAKY-SDILQIGARNS-------QNFELLKEVGK-VENPVLLKRGMGNTIQELLYSAEY 152 (262)
T ss_dssp -CGGG----HHHHHHH-CSEEEECGGGT-------TCHHHHHHHTT-SSSCEEEECCTTCCHHHHHHHHHH
T ss_pred -CHHh----HHHHHhh-CCEEEECcccc-------cCHHHHHHHHh-cCCcEEEecCCCCCHHHHHHHHHH
Confidence 3333 3445566 89999987753 36678888887 799999999997 99999998875
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.33 Score=44.77 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=64.2
Q ss_pred HHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC------------------------C-------C
Q psy4398 162 TTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA------------------------E-------R 210 (306)
Q Consensus 162 ~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~------------------------~-------~ 210 (306)
+.+.+..+.|.++.+-.+.+.+...++++.++++|++.|.++-.... . .
T Consensus 115 eev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 194 (370)
T 1gox_A 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDK 194 (370)
T ss_dssp HHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC----
T ss_pred HHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhcccc
Confidence 33344434678888765567777889999999999999987532110 0 0
Q ss_pred ------------C-CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 211 ------------P-RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 211 ------------~-~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
. .....|+.++++++.+++||+ .+++.++++++.+.+.|+
T Consensus 195 ~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~-vK~~~~~e~a~~a~~~Ga 247 (370)
T 1gox_A 195 ANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPIL-VKGVITAEDARLAVQHGA 247 (370)
T ss_dssp -----HHHHHHHTBCTTCCHHHHHHHHHHCCSCEE-EECCCSHHHHHHHHHTTC
T ss_pred ccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEE-EEecCCHHHHHHHHHcCC
Confidence 0 112367889999999999998 477899999999998865
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.29 Score=44.83 Aligned_cols=116 Identities=14% Similarity=0.081 Sum_probs=80.0
Q ss_pred eeecCCCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
+.+.+.+.|.+++-..+... .+..+.+ ++|.+.| |+.-+++..++.++. ..+.|
T Consensus 83 L~~~~~~~Gi~~~st~fD~~------svd~l~~~~v~~~KI--------------~S~~~~N~pLL~~va-----~~gKP 137 (350)
T 3g8r_A 83 LVAEMKANGFKAICTPFDEE------SVDLIEAHGIEIIKI--------------ASCSFTDWPLLERIA-----RSDKP 137 (350)
T ss_dssp HHHHHHHTTCEEEEEECSHH------HHHHHHHTTCCEEEE--------------CSSSTTCHHHHHHHH-----TSCSC
T ss_pred HHHHHHHcCCcEEeccCCHH------HHHHHHHcCCCEEEE--------------CcccccCHHHHHHHH-----hhCCc
Confidence 44455556777776664322 2233333 6788877 333456666655543 36999
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEe
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIAN 234 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~ 234 (306)
|.+|.... +.+++...++.+.+.|.+.+.+|+.+.-..+....|+..+..+++.+ ++||..+
T Consensus 138 viLstGms-tl~Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~S 200 (350)
T 3g8r_A 138 VVASTAGA-RREDIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVRIGYS 200 (350)
T ss_dssp EEEECTTC-CHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEEE
T ss_pred EEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCCEEcC
Confidence 99999975 88889999999998898877778764332223346899999999999 8999777
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.32 Score=46.27 Aligned_cols=144 Identities=11% Similarity=0.110 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHH
Q psy4398 112 DPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 112 ~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~ 188 (306)
++++..+.++.. .+ ||+.+-+..|.. +++.-.+.++++|+++ +.++.+-...+|+.++++++
T Consensus 202 ~~~~~~~~~~~~~~~~Gf~~~KlKvG~~---------------~~~~di~~v~avrea~pd~~L~vDaN~~wt~~~Ai~~ 266 (464)
T 4g8t_A 202 TPESVVRLAEAAYEKYGFNDFKLKGGVL---------------DGFEEAEAVTALAKRFPDARITLDPNGAWSLDEAVKI 266 (464)
T ss_dssp SHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEeCCCC---------------CHHHHHHHHHHHHhhCCCceEEEECCCccCHHHHHHH
Confidence 455555544433 34 999999986642 2333456778888877 45566666667999999999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCC---CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCCC--
Q psy4398 189 CKRLEACGIIAIGVHGRTKAERPRH---RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVEK-- 262 (306)
Q Consensus 189 a~~l~~~G~d~i~v~~~~~~~~~~~---p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p~-- 262 (306)
++.+++. +.++- ++... ....+..+++++.+++||.+.=.+.+..++.++++.+. .+ +..|+.
T Consensus 267 ~~~le~~-l~wiE-------eP~~~~d~~~~~e~~a~lr~~~~iPIa~gE~~~~~~~~~~~i~~~avdi---~~~d~~~G 335 (464)
T 4g8t_A 267 GKQLKGV-LAYAE-------DPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQSVDI---PLADPHFW 335 (464)
T ss_dssp HHHTTTT-CSCEE-------SCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHHTCCSE---EBCCHHHH
T ss_pred HHHhhhc-cceee-------cCcCcccccchHHHHHhhhccCCCCccccccccchhhHHHHHHhhCCCE---Eecccccc
Confidence 9999865 55442 11111 12357789999999999998888999999999988642 21 112221
Q ss_pred --chHHHHHHHHHhcCCCCCc
Q psy4398 263 --LPKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 263 --~~~~~l~~~~~~~g~~~~~ 281 (306)
..-+.+.+..+..|+++..
T Consensus 336 Git~~~kia~lA~~~gi~v~~ 356 (464)
T 4g8t_A 336 TMQGSIRVAQMCHEWGLTWGS 356 (464)
T ss_dssp CHHHHHHHHHHHHHHTCCCBC
T ss_pred chHHHHHHHHHHHHcCCEEEE
Confidence 1112666777888887443
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.51 Score=43.22 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=60.2
Q ss_pred cccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEE--cccCCCCCC-CCCCcHHHHHHH
Q psy4398 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV--HGRTKAERP-RHRNRIEMIRTL 223 (306)
Q Consensus 147 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v--~~~~~~~~~-~~p~~~~~v~~i 223 (306)
|+..+++..++.++. ..++||.+|-....+.+++...++.+...|..-+++ +|...-..| ....++..+..+
T Consensus 196 gAr~~~n~~LL~~va-----~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~l 270 (350)
T 1vr6_A 196 GARNAQNFRLLSKAG-----SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPII 270 (350)
T ss_dssp CGGGTTCHHHHHHHH-----TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHH
T ss_pred CcccccCHHHHHHHH-----ccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHHH
Confidence 556667777666654 468999999997668889999999999999855554 343222233 344688888999
Q ss_pred HhhCCCcEEE
Q psy4398 224 TQHLKIPVIA 233 (306)
Q Consensus 224 ~~~~~ipvia 233 (306)
++.+++||++
T Consensus 271 k~~~~lpVi~ 280 (350)
T 1vr6_A 271 RKESHLPILV 280 (350)
T ss_dssp HHHBSSCEEE
T ss_pred HHhhCCCEEE
Confidence 9998999866
|
| >1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.22 Score=43.03 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=62.2
Q ss_pred ceEEEecC-CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc-
Q psy4398 103 KIILQIGT-ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV- 178 (306)
Q Consensus 103 p~ivql~g-~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~- 178 (306)
.+++.|.+ .+.++..+.++.+. .|+|.||+ |-|.+.. .+.+.+.+.++.+|+.. +.|+.+=+|.
T Consensus 5 ~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vEl---------RvD~l~~---~~~~~v~~~~~~lr~~~~~~PiI~T~R~~ 72 (238)
T 1sfl_A 5 EVVATITPQLSIEETLIQKINHRIDAIDVLEL---------RIDQFEN---VTVDQVAEMITKLKVMQDSFKLLVTYRTK 72 (238)
T ss_dssp EEEEEECCCC---CHHHHHHHHTTTTCSEEEE---------ECTTSTT---CCHHHHHHHHHHHC---CCSEEEEECCBG
T ss_pred eEEEEecCCCCHHHHHHHHHHhhhcCCCEEEE---------Eeccccc---CCHHHHHHHHHHHHHhccCCCEEEEeecc
Confidence 57888999 88888777666665 49999999 4443321 14677888899998877 7899998886
Q ss_pred --C----CChHHHHHHHHHHHHc-CCcEEEEcc
Q psy4398 179 --F----HNEADTIALCKRLEAC-GIIAIGVHG 204 (306)
Q Consensus 179 --g----~~~~~~~~~a~~l~~~-G~d~i~v~~ 204 (306)
| .+.++..++.+.+.+. ++|+|.|.-
T Consensus 73 ~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl 105 (238)
T 1sfl_A 73 LQGGYGQFTNDSYLNLISDLANINGIDMIDIEW 105 (238)
T ss_dssp GGTSCBCCCHHHHHHHHHHGGGCTTCCEEEEEC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 2 2345577888888776 699999853
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.047 Score=49.08 Aligned_cols=84 Identities=10% Similarity=0.035 Sum_probs=55.3
Q ss_pred HHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-----CCc
Q psy4398 158 CNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-----KIP 230 (306)
Q Consensus 158 ~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-----~ip 230 (306)
.+-++++++..+ .++.+-+. +.+ -++.+.++|+|+|-++.. ..+.++++++.+ ++|
T Consensus 184 ~~ai~~~r~~~~~~~~i~vev~---tle----e~~~A~~aGaD~I~ld~~----------~~~~l~~~v~~l~~~~~~~~ 246 (299)
T 2jbm_A 184 EKAVRAARQAADFALKVEVECS---SLQ----EAVQAAEAGADLVLLDNF----------KPEELHPTATVLKAQFPSVA 246 (299)
T ss_dssp HHHHHHHHHHHTTTSCEEEEES---SHH----HHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHhCCcCCeEEEecC---CHH----HHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCee
Confidence 456666666654 34555443 222 234444689999998652 235555444444 389
Q ss_pred EEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 231 VIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 231 via~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
|.++||| +.+++.++.+.|+ .+|+.++.
T Consensus 247 I~ASGGI-t~~ni~~~~~aGaD~i~vGs~i~~ 277 (299)
T 2jbm_A 247 VEASGGI-TLDNLPQFCGPHIDVISMGMLTQA 277 (299)
T ss_dssp EEEESSC-CTTTHHHHCCTTCCEEECTHHHHS
T ss_pred EEEECCC-CHHHHHHHHHCCCCEEEEChhhcC
Confidence 9999999 7999999998876 77776654
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=94.51 E-value=1 Score=40.48 Aligned_cols=118 Identities=7% Similarity=-0.040 Sum_probs=77.8
Q ss_pred HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEE-EeccCCChHHHHHHHHHHHHcCCc--
Q psy4398 122 KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC-KIRVFHNEADTIALCKRLEACGII-- 198 (306)
Q Consensus 122 ~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v-Kir~g~~~~~~~~~a~~l~~~G~d-- 198 (306)
++++|+|.|+|+..+..+ | .....++...++++.+++.+++|+++ -.. +.+.-.+.+++..++|++
T Consensus 83 ~v~~GAdiIDIg~~StrP-------~-~~~vs~eee~~vV~~v~~~~~vplsI~DT~---~~~~~~~V~eaal~aga~~k 151 (310)
T 2h9a_B 83 CVEYGADIVALRLVSAHP-------D-GQNRSGAELAEVCKAVADAIDVPLMIIGCG---VEEKDAEIFPVIGEALSGRN 151 (310)
T ss_dssp HHHTTCSEEEEECGGGCT-------T-TTCCCHHHHHHHHHHHHHHCSSCEEEECCS---CHHHHHHHHHHHHHHTTTSC
T ss_pred HHHcCCcEEEEeCccCCC-------C-CCCCCHHHHHHHHHHHHHhCCceEEEECCC---CCCCCHHHHHHHHHhCCCCC
Confidence 445699999999864221 1 12235666677999999888999988 442 455567888888889997
Q ss_pred -EEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhcc---ccCCCC
Q psy4398 199 -AIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLR---NHYPVE 261 (306)
Q Consensus 199 -~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGr---all~~p 261 (306)
.|. +++. +++-+..+....+.|+|+.-- .+++.+++.++.....|= -++-||
T Consensus 152 ~iINdvs~~----------~~~~~~~~aa~~g~~vv~m~~-~dv~~l~~~~~~a~~~Gi~~e~IilDP 208 (310)
T 2h9a_B 152 CLLSSATKD----------NYKPIVATCMVHGHSVVASAP-LDINLSKQLNIMIMEMNLAPNRIIMDP 208 (310)
T ss_dssp CEEEEECTT----------THHHHHHHHHHHTCEEEEECS-SCHHHHHHHHHHHHTTTCCGGGEEEEC
T ss_pred CEEEECCCC----------ccHHHHHHHHHhCCCEEEECh-hHHHHHHHHHHHHHHCCCChhhEEEeC
Confidence 443 3321 345555666677999998763 356667666665444442 356677
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=94.50 E-value=1.3 Score=40.49 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=55.2
Q ss_pred HHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCH
Q psy4398 161 LTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240 (306)
Q Consensus 161 v~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~ 240 (306)
+....+..+++++.-.= +. +-++.+++.|++.+-|..+.. .|+++++.+.+ ++.|||.+-|..++
T Consensus 83 L~~~~~~~Gi~~~st~f---D~----~svd~l~~~~v~~~KI~S~~~-------~N~pLL~~va~-~gKPviLstGmstl 147 (350)
T 3g8r_A 83 LVAEMKANGFKAICTPF---DE----ESVDLIEAHGIEIIKIASCSF-------TDWPLLERIAR-SDKPVVASTAGARR 147 (350)
T ss_dssp HHHHHHHTTCEEEEEEC---SH----HHHHHHHHTTCCEEEECSSST-------TCHHHHHHHHT-SCSCEEEECTTCCH
T ss_pred HHHHHHHcCCcEEeccC---CH----HHHHHHHHcCCCEEEECcccc-------cCHHHHHHHHh-hCCcEEEECCCCCH
Confidence 34444455777655433 32 224455778999999976642 48899999986 58999999999999
Q ss_pred HHHHHHHHhhh
Q psy4398 241 VDYGGVFSLNC 251 (306)
Q Consensus 241 ~~~~~~l~~~v 251 (306)
+++..++++..
T Consensus 148 ~Ei~~Ave~i~ 158 (350)
T 3g8r_A 148 EDIDKVVSFML 158 (350)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988644
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.32 Score=45.51 Aligned_cols=137 Identities=10% Similarity=0.021 Sum_probs=91.2
Q ss_pred hcCCCEEEEccCC-CccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCcEE
Q psy4398 124 EHDVAAIDINMGC-PKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200 (306)
Q Consensus 124 ~~g~d~veln~gc-P~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i 200 (306)
+.||..+-+.++- |. .|. .+.+.-.+.++++|+++ ++++.+-...+|+.+++.++++.|++.++.+|
T Consensus 172 ~~Gf~~~K~Kv~~g~~-------~g~---~~~~~di~~v~avRea~G~~~~L~vDaN~~w~~~~A~~~~~~Le~~~l~~i 241 (404)
T 3ekg_A 172 KMGFIGGKMPLHHGPS-------EGE---EGLKKNLEELATMRERVGPDFWLMFDCWMSLDLNYATRLARGAREYGLKWI 241 (404)
T ss_dssp HTTCSEEEEECCCCGG-------GHH---HHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTCCEE
T ss_pred HcCCCEEEEecCCCCc-------ccc---ccHHHHHHHHHHHHHHhCCCCeEEecCCCCCCHHHHHHHHHHHhhcCCcEE
Confidence 4589988887542 11 011 12345567788889887 45677777778999999999999999998877
Q ss_pred EEcccCCCCCCCCCCcHHHHHHHHhhCCCcE-EEec-CCCCHHHHHHHHHhhhhhccccCCCC-Cch----HHHHHHHHH
Q psy4398 201 GVHGRTKAERPRHRNRIEMIRTLTQHLKIPV-IANG-GSKEIVDYGGVFSLNCAFLRNHYPVE-KLP----KTILYAHCK 273 (306)
Q Consensus 201 ~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipv-ia~G-GI~s~~~~~~~l~~~v~vGrall~~p-~~~----~~~l~~~~~ 273 (306)
- ++ ..+.+++..+++++.+++|| |+.| .+.+..+++++++.+. ...+--++ .+. -+.+.+..+
T Consensus 242 E-------eP-~~~~d~~~~a~l~~~~~~pi~Ia~gE~~~~~~~~~~li~~~a--~dii~~d~~~~GGitea~kia~lA~ 311 (404)
T 3ekg_A 242 E-------EA-LPPDDYWGYAELRRNAPTGMMVTTGEHEATRWGFRMLLEMGC--CDIIQPDVGWCGGVTELLKISALAD 311 (404)
T ss_dssp E-------CC-SCTTCHHHHHHHHHHSCTTCEEEECTTCCHHHHHHHHHHTTC--CSEECCCTTTTTHHHHHHHHHHHHH
T ss_pred e-------cC-CCcccHHHHHHHHHhcCCCeEEEecCccCCHHHHHHHHHcCC--CCeEecChhhcCCccHHHHHHHHHH
Confidence 4 22 23458899999999998885 4544 4778888888877532 00111122 221 126677788
Q ss_pred hcCCCCC
Q psy4398 274 YKRFEVP 280 (306)
Q Consensus 274 ~~g~~~~ 280 (306)
++|+++.
T Consensus 312 a~gv~v~ 318 (404)
T 3ekg_A 312 AHNALVV 318 (404)
T ss_dssp HTTCEEC
T ss_pred HcCCEEE
Confidence 8888754
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.077 Score=47.30 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=57.7
Q ss_pred HHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-----CC
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-----KI 229 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-----~i 229 (306)
+.+.++++|+..+ .++.|-+. + .+-++.+.++|+|.|.++.. ..+.++++.+.+ ++
T Consensus 179 i~~av~~ar~~~~~~~~I~VEV~---t----leea~eA~~aGaD~I~LDn~----------~~e~l~~av~~l~~~~~~v 241 (285)
T 1o4u_A 179 AERAVQEVRKIIPFTTKIEVEVE---N----LEDALRAVEAGADIVMLDNL----------SPEEVKDISRRIKDINPNV 241 (285)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEES---S----HHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhCCCCceEEEEeC---C----HHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCc
Confidence 4566777777653 35555443 2 34455556799999999863 224444444333 68
Q ss_pred cEEEecCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 230 PVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 230 pvia~GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
|+.++|||+ ++++.++.+.|+ .+|+..+.-|
T Consensus 242 ~ieASGGIt-~eni~~~a~tGVD~IsvGslt~sa~ 275 (285)
T 1o4u_A 242 IVEVSGGIT-EENVSLYDFETVDVISSSRLTLQEV 275 (285)
T ss_dssp EEEEEECCC-TTTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred eEEEECCCC-HHHHHHHHHcCCCEEEEeHHHcCCC
Confidence 999999995 788888777765 8888777543
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.45 Score=40.18 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
..++++..+.++.+ +.|.|+||-. +.++.+ +.+++ ..|++--++.. +..+.
T Consensus 62 n~~~~~i~~~~~~~--~ld~vQLHG~----------------e~~~~~----~~l~~--~~~vika~~v~-~~~~l---- 112 (205)
T 1nsj_A 62 NEEPEKILDVASYV--QLNAVQLHGE----------------EPIELC----RKIAE--RILVIKAVGVS-NERDM---- 112 (205)
T ss_dssp SCCHHHHHHHHHHH--TCSEEEECSC----------------CCHHHH----HHHHT--TSEEEEEEEES-SHHHH----
T ss_pred CCCHHHHHHHHHhh--CCCEEEECCC----------------CCHHHH----HHHhc--CCCEEEEEEcC-CHHHH----
Confidence 44565555444432 7899999821 234443 33432 36777666642 22222
Q ss_pred HHHHHcCCcEEEEcccCCC-CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccC
Q psy4398 190 KRLEACGIIAIGVHGRTKA-ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHY 258 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~-~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall 258 (306)
..+.+..+|++.+...... ++.....+|+++..+. ..+.|++..||++ +++..++++. ++-+.+.+=
T Consensus 113 ~~~~~~~~d~~LlD~~~~~~GGtG~~fdw~~l~~~~-~~~~p~~LAGGL~-peNV~~ai~~~~p~gVDvsSGvE 184 (205)
T 1nsj_A 113 ERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYR-DRFRYLVLSGGLN-PENVRSAIDVVRPFAVDVSSGVE 184 (205)
T ss_dssp HHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGG-GGSSCEEEESSCC-TTTHHHHHHHHCCSEEEESGGGE
T ss_pred HHHHHcCCCEEEECCCCCCCCCCCCccCHHHHHhhh-cCCCcEEEECCCC-HHHHHHHHHhcCCCEEEECCcee
Confidence 2233344999998764421 2222346887775542 3368999999986 7777666653 566666554
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.46 Score=42.59 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=84.5
Q ss_pred CCCceEEEecCC-CHHHHHHHHHHH-----hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE
Q psy4398 100 EKNKIILQIGTA-DPERALEAAKKV-----EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS 173 (306)
Q Consensus 100 ~~~p~ivql~g~-~~~~~~~aa~~~-----~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~ 173 (306)
.+.|+++.+-+. +.+...++.+.- +.||.-|.+..+. -.++++.+...++++.... .++.|-
T Consensus 81 ~~VPVaLHlDHg~~~e~i~~ai~~~~~~~~~~GFtSVMiDgS~-----------~p~eENi~~Tk~vv~~ah~-~gvsVE 148 (306)
T 3pm6_A 81 ASVPITLHLDHAQDPEIIKRAADLSRSETHEPGFDSIMVDMSH-----------FSKEENLRLTRELVAYCNA-RGIATE 148 (306)
T ss_dssp CSSCEEEEEEEECCHHHHHHHHHTC------CCCSEEEECCTT-----------SCHHHHHHHHHHHHHHHHT-TTCEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhhhhccCCCCCCEEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-cCCeEE
Confidence 467888887654 444433333310 1288888886543 1345677777888877654 355555
Q ss_pred EEecc--C---------------CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCC---CCCcHHHHHHHHhhC--CCcE
Q psy4398 174 CKIRV--F---------------HNEADTIALCKRLEACGIIAIGVHGRTKAERPR---HRNRIEMIRTLTQHL--KIPV 231 (306)
Q Consensus 174 vKir~--g---------------~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~---~p~~~~~v~~i~~~~--~ipv 231 (306)
.-+.. | -++++..++ .+.|+|.|-+.=.+..+.|. ...+++.+++|++.+ ++|+
T Consensus 149 aElG~igG~Edgv~~~~~~~~~yT~Peea~~F----v~TgvD~LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~~vpL 224 (306)
T 3pm6_A 149 AEPGRIEGGEDGVQDTVDLEGVLTTPEESEEF----VATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGERVGL 224 (306)
T ss_dssp ECSSBCCCCBTTBCCCTTCCCBCCCHHHHHHH----HTTTCSEECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTTTSEE
T ss_pred EEeeeeccccCCccccccccccCCCHHHHHHH----HHcCCCEEEEEcCccccCcCCCCCccCHHHHHHHHHHhCCCCCE
Confidence 54442 1 122333333 36999999764444334442 235889999999998 7999
Q ss_pred EEecCCCC-HHHHHHHHHhhh
Q psy4398 232 IANGGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 232 ia~GGI~s-~~~~~~~l~~~v 251 (306)
+.-||-.. .++.+++++.|+
T Consensus 225 VlHGgSG~p~e~i~~ai~~GV 245 (306)
T 3pm6_A 225 VLHGADPFTKEIFEKCIERGV 245 (306)
T ss_dssp EECSCTTCCHHHHHHHHHTTE
T ss_pred EeeCCCCCCHHHHHHHHHcCC
Confidence 99999765 455788888765
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.38 Score=42.15 Aligned_cols=118 Identities=13% Similarity=0.004 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcccccEEEEeccC-CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC-----------------cHH
Q psy4398 157 ACNILTTLISNLSIPVSCKIRVF-HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN-----------------RIE 218 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~g-~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~-----------------~~~ 218 (306)
+.+..+..++.-...+..-+..| ++.+++.++++.++++|+|.|.+.-...+....+|. -++
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~ 83 (262)
T 2ekc_A 4 ISDKFTELKEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLE 83 (262)
T ss_dssp HHHHHHHHHHHTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHH
Confidence 34455555443223333333343 677889999999999999999985433322222221 246
Q ss_pred HHHHHHhhC-CCcEEEecCCCCH------HHHHHHHHhhhhhccccCCCCCc--hHH-HHHHHHHhcCCC
Q psy4398 219 MIRTLTQHL-KIPVIANGGSKEI------VDYGGVFSLNCAFLRNHYPVEKL--PKT-ILYAHCKYKRFE 278 (306)
Q Consensus 219 ~v~~i~~~~-~ipvia~GGI~s~------~~~~~~l~~~v~vGrall~~p~~--~~~-~l~~~~~~~g~~ 278 (306)
+++++++.+ ++|++..|-.+.+ ..++.+.+.|+. +++- |.+ .+. .+.+.++++|++
T Consensus 84 ~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~d---gvii-~dl~~ee~~~~~~~~~~~gl~ 149 (262)
T 2ekc_A 84 LSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGID---GFIV-PDLPPEEAEELKAVMKKYVLS 149 (262)
T ss_dssp HHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCC---EEEC-TTCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCC---EEEE-CCCCHHHHHHHHHHHHHcCCc
Confidence 689999998 9999996432211 122333333331 1211 322 222 677778889876
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.19 Score=44.78 Aligned_cols=84 Identities=11% Similarity=0.127 Sum_probs=56.3
Q ss_pred HHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEE
Q psy4398 158 CNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIA 233 (306)
Q Consensus 158 ~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia 233 (306)
.+.++.+|+..+ .++.|-+. + .+-++.+.++|+|+|.++.. ..+.++++.+.+ ++|+.+
T Consensus 183 ~~av~~ar~~~~~~~~IgVev~---t----~eea~eA~~aGaD~I~ld~~----------~~~~~k~av~~v~~~ipi~A 245 (286)
T 1x1o_A 183 GEAVRRAKARAPHYLKVEVEVR---S----LEELEEALEAGADLILLDNF----------PLEALREAVRRVGGRVPLEA 245 (286)
T ss_dssp HHHHHHHHHHSCTTSCEEEEES---S----HHHHHHHHHHTCSEEEEESC----------CHHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEeC---C----HHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEE
Confidence 456677777664 34555333 2 33345556789999998764 224445555544 699999
Q ss_pred ecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 234 NGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
+|||+ ++++.++.+.|+ ++|+....
T Consensus 246 sGGIt-~eni~~~a~tGvD~IsVgs~~~~ 273 (286)
T 1x1o_A 246 SGNMT-LERAKAAAEAGVDYVSVGALTHS 273 (286)
T ss_dssp ESSCC-HHHHHHHHHHTCSEEECTHHHHS
T ss_pred EcCCC-HHHHHHHHHcCCCEEEEcHHHcC
Confidence 99996 899999998865 77776654
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.53 Score=40.46 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcccccEEEEeccCC-----ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCC
Q psy4398 155 DIACNILTTLISNLSIPVSCKIRVFH-----NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKI 229 (306)
Q Consensus 155 ~~~~eiv~~v~~~~~~pv~vKir~g~-----~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~i 229 (306)
..+.++++.+...- .+.|-++.-+ +..+..++|+.+++.|+.+|.+. ..+.++++++.+++
T Consensus 5 ~~~~~~~~~~~~~~--~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~------------~~~~i~~ir~~v~~ 70 (232)
T 3igs_A 5 SLLEQLDKNIAASG--GLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIE------------GIDNLRMTRSLVSV 70 (232)
T ss_dssp CHHHHHHHHHHHHC--CEEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEEE------------SHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhhhcC--CEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEEC------------CHHHHHHHHHhcCC
Confidence 45566666663222 3455555311 35678999999999999999872 35889999999999
Q ss_pred cEEEe-----cC--C---CCHHHHHHHHHhhh---hhccccCCCCCchHHHHHHHHHhcCCC
Q psy4398 230 PVIAN-----GG--S---KEIVDYGGVFSLNC---AFLRNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 230 pvia~-----GG--I---~s~~~~~~~l~~~v---~vGrall~~p~~~~~~l~~~~~~~g~~ 278 (306)
||++. || + .+.++++++++.|+ .++.+...+|...+ ++-++..++|..
T Consensus 71 Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~-~~i~~~~~~g~~ 131 (232)
T 3igs_A 71 PIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVE-ALLARIHHHHLL 131 (232)
T ss_dssp CEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHH-HHHHHHHHTTCE
T ss_pred CEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCCHHHHH-HHHHHHHHCCCE
Confidence 99862 33 2 35678888888765 56666656773332 333334455654
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.45 Score=42.30 Aligned_cols=124 Identities=5% Similarity=0.043 Sum_probs=75.9
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C------CChHHHHHHHHHHHHc
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F------HNEADTIALCKRLEAC 195 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g------~~~~~~~~~a~~l~~~ 195 (306)
+.|++.|.+-++.. ....+...+-...+..+.+.++++..++. +..|..-++. | .+++...++++.+.+.
T Consensus 90 ~~G~~~V~i~~~~S-~~h~~~~~~~~~~e~~~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~ 167 (295)
T 1ydn_A 90 AAHADEIAVFISAS-EGFSKANINCTIAESIERLSPVIGAAIND-GLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSL 167 (295)
T ss_dssp HTTCSEEEEEEESC-HHHHHHHTSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEEEecC-HHHHHHHcCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhc
Confidence 45999988854332 11111112223344556667777777654 6666544442 1 3677899999999999
Q ss_pred CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEec--CCC-CHHHHHHHHHhhh
Q psy4398 196 GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANG--GSK-EIVDYGGVFSLNC 251 (306)
Q Consensus 196 G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~G--GI~-s~~~~~~~l~~~v 251 (306)
|+|.|.+.+... ...+....++++.+++.++ +|+-..+ +-. ...+...+++.|+
T Consensus 168 G~d~i~l~Dt~G--~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~ 225 (295)
T 1ydn_A 168 GCHEVSLGDTIG--RGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGL 225 (295)
T ss_dssp TCSEEEEEETTS--CCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTC
T ss_pred CCCEEEecCCCC--CcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCC
Confidence 999999875322 1211224678899999986 8887776 322 2444566666665
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.96 Score=41.55 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|+|+|-++.+. +-+..+ ..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 77 ID~~al~~lv~~li~~Gv~Gl~v~GTT--------GE~~~L--s~eEr~~vi~~~ve~~~grvpViaGvg~-~st~eai~ 145 (360)
T 4dpp_A 77 FDLEAYDDLVNIQIQNGAEGVIVGGTT--------GEGQLM--SWDEHIMLIGHTVNCFGGSIKVIGNTGS-NSTREAIH 145 (360)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTT--------TTGGGS--CHHHHHHHHHHHHHHHTTTSEEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecccc--------cChhhC--CHHHHHHHHHHHHHHhCCCCeEEEecCC-CCHHHHHH
Confidence 4567777777755 4599999996432 111222 2333345555555444 4788887652 56788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCc---HHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNR---IEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVF 247 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~---~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l 247 (306)
+++.++++|+|++.+... .|..|.. .++.++|.++ +||+.= |---+++...++.
T Consensus 146 la~~A~~~Gadavlvv~P----yY~k~sq~gl~~hf~~IA~a--~PiilYNiP~rTg~~ls~e~l~~La 208 (360)
T 4dpp_A 146 ATEQGFAVGMHAALHINP----YYGKTSIEGLIAHFQSVLHM--GPTIIYNVPGRTGQDIPPRAIFKLS 208 (360)
T ss_dssp HHHHHHHTTCSEEEEECC----CSSCCCHHHHHHHHHTTGGG--SCEEEEECHHHHSCCCCHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEcCC----CCCCCCHHHHHHHHHHHHHh--CCEEEEeCCcccCCCCCHHHHHHHh
Confidence 999999999999987643 2222211 3344555554 465542 3333555555554
|
| >1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A | Back alignment and structure |
|---|
Probab=94.19 E-value=1.4 Score=40.45 Aligned_cols=140 Identities=9% Similarity=0.025 Sum_probs=89.0
Q ss_pred CCCceEEEecCCCH---HHHHHHHHHH--------hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 100 EKNKIILQIGTADP---ERALEAAKKV--------EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 100 ~~~p~ivql~g~~~---~~~~~aa~~~--------~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
.+.|+++.+-|... +.+..+.+.. +.||.-|.+..|. -.++++.+...++++...+ .
T Consensus 100 ~~VPVaLHlDHg~~~~~~~i~~~i~a~~~~~~~~~~~gFtSVMiDgS~-----------~p~eENI~~Tkevv~~ah~-~ 167 (358)
T 1dos_A 100 YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSE-----------ESLQENIEICSKYLERMSK-I 167 (358)
T ss_dssp HTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTT-----------SCHHHHHHHHHHHHHHHHH-T
T ss_pred CCCCEEEECCCCCCccHHHHHHHHHHHHHHHHhcccCCCceEeecCCC-----------CCHHHHHHHHHHHHHHHHH-c
Confidence 46899999987643 2233222221 1379999997553 2355677888888887654 4
Q ss_pred cccEEEEecc--C----CC---------hHHHHHHHHHHHH-cCCc---EEEEcccCCCCCCC---CCCcHHHHHHHHhh
Q psy4398 169 SIPVSCKIRV--F----HN---------EADTIALCKRLEA-CGII---AIGVHGRTKAERPR---HRNRIEMIRTLTQH 226 (306)
Q Consensus 169 ~~pv~vKir~--g----~~---------~~~~~~~a~~l~~-~G~d---~i~v~~~~~~~~~~---~p~~~~~v~~i~~~ 226 (306)
++.|-.-+.. | .+ ..+..+..+..++ .|+| .|-+.=.+..+.|. ...+++.++++++.
T Consensus 168 gvsVEaELG~vGG~EDgv~~~~~~~~~~yT~Peea~~fv~~ttgvd~~d~LAvaiGt~HG~Yk~g~p~L~~~~L~~i~~~ 247 (358)
T 1dos_A 168 GMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEY 247 (358)
T ss_dssp TCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHHH
T ss_pred CCEEEEEeccccCcCCCccccccccccccCCHHHHHHHHHHhcCCChhceEEEecccccCccCCCCCCcCHHHHHHHHHH
Confidence 6666666554 1 00 1234455555556 5888 88764444444442 23467888888775
Q ss_pred ---------CCCcEEEecCCCC-HHHHHHHHHhhh
Q psy4398 227 ---------LKIPVIANGGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 227 ---------~~ipvia~GGI~s-~~~~~~~l~~~v 251 (306)
+++|++..||-.+ .++++++++.|+
T Consensus 248 i~~~~g~~~~~vpLVlHGgSG~~~e~i~~ai~~GV 282 (358)
T 1dos_A 248 VSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGV 282 (358)
T ss_dssp HHHHHTCCTTCSCEEECSCTTCCHHHHHHHHHTTE
T ss_pred HHHHhCCCCCCCcEEEeCCCCCCHHHHHHHHHCCC
Confidence 6799999998764 567888888865
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.31 Score=43.30 Aligned_cols=102 Identities=9% Similarity=0.108 Sum_probs=61.7
Q ss_pred CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~ 190 (306)
+++...+.|+ .+++|+|.|+|+..+..+... . -+..+..+.+..+++++++.+++||++-.. -.+.++
T Consensus 36 ~~~~a~~~a~~~v~~GAdiIDIGgestrPga~--~--v~~~eE~~rv~pvi~~l~~~~~~piSIDT~-------~~~va~ 104 (282)
T 1aj0_A 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAA--E--VSVEEELQRVIPVVEAIAQRFEVWISVDTS-------KPEVIR 104 (282)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCC--C--CCHHHHHHHHHHHHHHHHHHCCCEEEEECC-------CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC--c--CCHHHHHHHHHHHHHHHHhhcCCeEEEeCC-------CHHHHH
Confidence 3555555555 445699999999854221000 0 112344566788888888877889888766 246666
Q ss_pred HHHHcCCcEEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 191 RLEACGIIAIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 191 ~l~~~G~d~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
+..++|++.|. +++. ..+ +++. +.+..++|+|..
T Consensus 105 aAl~aGa~iINdvsg~------~d~---~~~~-~~a~~~~~vVlm 139 (282)
T 1aj0_A 105 ESAKVGAHIINDIRSL------SEP---GALE-AAAETGLPVCLM 139 (282)
T ss_dssp HHHHTTCCEEEETTTT------CST---THHH-HHHHHTCCEEEE
T ss_pred HHHHcCCCEEEECCCC------CCH---HHHH-HHHHhCCeEEEE
Confidence 77778999886 3332 112 2333 334457887774
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.29 Score=45.48 Aligned_cols=151 Identities=8% Similarity=-0.075 Sum_probs=93.7
Q ss_pred HHHHHHHHHH-HhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHHH
Q psy4398 113 PERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 113 ~~~~~~aa~~-~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~a 189 (306)
++++.+.++. .++||..+-+.+|.+.. +-.. ..+++.-.+.++++|+.+ +..+.+-...+|+.+++.+++
T Consensus 149 ~e~~~~~a~~~~~~Gf~~~KlKvg~~~~------~~~~-~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w~~~~A~~~~ 221 (392)
T 3v5c_A 149 VALMQEEAMQGYAKGQRHFKIKVGRGGR------HMPL-WEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVL 221 (392)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCTTTT------TSCH-HHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCc------cccc-cccHHHHHHHHHHHHHHcCCCCcEEeeCCCCcCHHHHHHHH
Confidence 3555555554 35699999998875321 0000 012455567788888876 466777777789999999999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhhh-hhcc-ccCCCCC
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH-----LKIPVIANGGSKEIVDYGGVFSLNC-AFLR-NHYPVEK 262 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~-----~~ipvia~GGI~s~~~~~~~l~~~v-~vGr-all~~p~ 262 (306)
+.|++.++.+|- ++.. .+++..+++++. +++||.+.=.+. ..++.++++.+. .+-. -+..+-.
T Consensus 222 ~~L~~~~l~~iE-------eP~~--~d~~~~~~l~~~~~~~~~~ipIa~gE~~~-~~~~~~li~~~a~dii~~d~~~GGi 291 (392)
T 3v5c_A 222 AALSDVNLYWLE-------AAFH--EDEALYEDLKEWLGQRGQNVLIADGEGLA-SPHLIEWATRGRVDVLQYDIIWPGF 291 (392)
T ss_dssp HHTTTSCCCEEE-------CSSS--CCHHHHHHHHHHHHHHTCCCEEEECCSSC-CTTHHHHHHTTSCCEECCBTTTBCH
T ss_pred HhcccCCCeEEe-------CCCC--cCHHHHHHHHHhhccCCCCCcEECCCccc-HHHHHHHHHcCCCcEEEeCCCCCCH
Confidence 999999887773 2332 367777888875 577876655555 667777776532 1100 0001101
Q ss_pred chHHHHHHHHHhcCCCCC
Q psy4398 263 LPKTILYAHCKYKRFEVP 280 (306)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~ 280 (306)
..-+.+.+..+++|++..
T Consensus 292 tea~kia~~A~~~gv~~~ 309 (392)
T 3v5c_A 292 THWMELGEKLDAHGLRSA 309 (392)
T ss_dssp HHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHcCCeEE
Confidence 122366777888888743
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.87 Score=39.91 Aligned_cols=178 Identities=10% Similarity=0.065 Sum_probs=100.9
Q ss_pred ccccccccc-CCceEEccCCCCCCHH----HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeee
Q psy4398 21 NANQANINY-SNKIILAPMVRMNTLP----FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFR 95 (306)
Q Consensus 21 ~~~~~~l~l-~n~i~lAPm~~~t~~~----~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 95 (306)
.++++++.+ .+++++|-++...+.. +...+++.|+..+.--+..+..... ...++ .+.+ .+.+.+
T Consensus 12 ~i~i~~~~iG~~~~vIAgpc~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~---~~~g~------~~eg-l~~l~~ 81 (262)
T 1zco_A 12 VVKINDVKFGEGFTIIAGPCSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPY---SFQGY------GEKA-LRWMRE 81 (262)
T ss_dssp CEEETTEEETSSCEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTT---SCCCC------THHH-HHHHHH
T ss_pred eEEECCEEECCCcEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCcc---cccCc------cHHH-HHHHHH
Confidence 344555443 1188888887655544 3333567888766544432211000 00010 0000 112333
Q ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 96 TCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 96 ~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
.+.+.|.|++..++... +...+++ . +|.+.| |+...++..++.++. + .++||.+|
T Consensus 82 ~~~~~Gl~~~te~~d~~--~~~~l~~---~-vd~~kI--------------ga~~~~n~~ll~~~a----~-~~kPV~lk 136 (262)
T 1zco_A 82 AADEYGLVTVTEVMDTR--HVELVAK---Y-SDILQI--------------GARNSQNFELLKEVG----K-VENPVLLK 136 (262)
T ss_dssp HHHHHTCEEEEECCCGG--GHHHHHH---H-CSEEEE--------------CGGGTTCHHHHHHHT----T-SSSCEEEE
T ss_pred HHHHcCCcEEEeeCCHH--hHHHHHh---h-CCEEEE--------------CcccccCHHHHHHHH----h-cCCcEEEe
Confidence 34445667776664332 2222222 1 577777 344556666655553 3 69999999
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEE-EcccCCC-CCC-CCCCcHHHHHHHHhhCCCcEEE
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIG-VHGRTKA-ERP-RHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~-v~~~~~~-~~~-~~p~~~~~v~~i~~~~~ipvia 233 (306)
-....+.+++.+.++.+...|...++ ++..... ..| ....++..+..+++.+++|||+
T Consensus 137 ~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~ 197 (262)
T 1zco_A 137 RGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIV 197 (262)
T ss_dssp CCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEE
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEE
Confidence 99766889999999999999985555 4532111 133 2345778889999998999865
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.047 Score=48.95 Aligned_cols=87 Identities=10% Similarity=0.080 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-------
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL------- 227 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~------- 227 (306)
+.+-++++++..+ .++.+-+. +.++ ++.+.++|+|+|-++... .+.++++++.+
T Consensus 185 i~~ai~~~r~~~~~~~~i~vev~---tlee----~~~A~~aGaD~I~ld~~~----------~~~l~~~v~~l~~~~~g~ 247 (294)
T 3c2e_A 185 ITNAVKNARAVCGFAVKIEVECL---SEDE----ATEAIEAGADVIMLDNFK----------GDGLKMCAQSLKNKWNGK 247 (294)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECS---SSHH----HHHHHHHTCSEEECCC------------------------------
T ss_pred HHHHHHHHHHhcCcCCeEEEecC---CHHH----HHHHHHcCCCEEEECCCC----------HHHHHHHHHHhcccccCC
Confidence 4556667776654 34555333 2233 333345899999886421 23444444443
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 228 -KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 228 -~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
++||.++||| +.+++.++.+.|+ .+|+.++.-|
T Consensus 248 ~~v~I~ASGGI-t~~ni~~~~~~GvD~i~vGs~i~~a~ 284 (294)
T 3c2e_A 248 KHFLLECSGGL-NLDNLEEYLCDDIDIYSTSSIHQGTP 284 (294)
T ss_dssp -CCEEEEECCC-CC------CCCSCSEEECGGGTSSCC
T ss_pred CCeEEEEECCC-CHHHHHHHHHcCCCEEEEechhcCCC
Confidence 2899999999 7999999998865 8888876544
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.51 Score=41.76 Aligned_cols=177 Identities=13% Similarity=0.111 Sum_probs=101.7
Q ss_pred cccccccccc--CCceEEccCCCCCCHH----HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCC--Cc
Q psy4398 20 ANANQANINY--SNKIILAPMVRMNTLP----FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD--GS 91 (306)
Q Consensus 20 ~~~~~~~l~l--~n~i~lAPm~~~t~~~----~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~ 91 (306)
..++++++.+ .+++++|-.+...+.. +...+++.|+.++-.-...+..... +|...+. .+
T Consensus 25 ~~i~i~~~~iG~~~~~vIAgpc~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~------------~f~g~g~~gl~ 92 (276)
T 1vs1_A 25 TVVEVEGVRIGGGSKAVIAGPCSVESWEQVREAALAVKEAGAHMLRGGAFKPRTSPY------------SFQGLGLEGLK 92 (276)
T ss_dssp CCEEETTEEEBTTBCEEEEECSBCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSSTT------------SCCCCTHHHHH
T ss_pred cEEEECCEEECCCCeEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCChh------------hhcCCCHHHHH
Confidence 4456666554 2477888777555544 2233457888875444332211000 0111000 11
Q ss_pred eeeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+.+.+.+.|.|++..++-.. +...+++ . +|.+.| |+..+++..++.++. ..++|
T Consensus 93 ~l~~~~~~~Gl~~~te~~d~~--~~~~l~~---~-vd~~kI--------------gs~~~~n~~ll~~~a-----~~~kP 147 (276)
T 1vs1_A 93 LLRRAGDEAGLPVVTEVLDPR--HVETVSR---Y-ADMLQI--------------GARNMQNFPLLREVG-----RSGKP 147 (276)
T ss_dssp HHHHHHHHHTCCEEEECCCGG--GHHHHHH---H-CSEEEE--------------CGGGTTCHHHHHHHH-----HHTCC
T ss_pred HHHHHHHHcCCcEEEecCCHH--HHHHHHH---h-CCeEEE--------------CcccccCHHHHHHHH-----ccCCe
Confidence 222333344556665554322 2221222 1 456555 566667777766654 35899
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCC-cEEEEc-ccCCCCC-CCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGI-IAIGVH-GRTKAER-PRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~-d~i~v~-~~~~~~~-~~~p~~~~~v~~i~~~~~ipvia 233 (306)
|.+|-....+.+++...++.+...|. +.+.+| |...-.. .....++..+..+++.+++||++
T Consensus 148 V~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~~lpVi~ 212 (276)
T 1vs1_A 148 VLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIV 212 (276)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSSCEEE
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHhCCCEEE
Confidence 99999976688899999999999998 455566 5422223 23346888899999988999865
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=93.73 E-value=0.38 Score=43.03 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=45.1
Q ss_pred HHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHH
Q psy4398 114 ERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRL 192 (306)
Q Consensus 114 ~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l 192 (306)
+...+.|+ .+++|+|.|+|+.-+..+.. -.-+..+..+.+..+++++++.+++||++-.. + .+.+++.
T Consensus 63 ~~a~~~a~~~v~~GAdiIDIGgeStrPga----~~v~~~eE~~RvvpvI~~l~~~~~vpiSIDT~---~----~~V~~aA 131 (297)
T 1tx2_A 63 DAAVRHAKEMRDEGAHIIDIGGESTRPGF----AKVSVEEEIKRVVPMIQAVSKEVKLPISIDTY---K----AEVAKQA 131 (297)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCC----C----CCCCHHHHHHHHHHHHHHHHHHSCSCEEEECS---C----HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCCCCC----CCCCHHHHHHHHHHHHHHHHhcCCceEEEeCC---C----HHHHHHH
Confidence 44444444 33469999999976522110 00111233445666778888877899988765 2 3455555
Q ss_pred HHcCCcEEE
Q psy4398 193 EACGIIAIG 201 (306)
Q Consensus 193 ~~~G~d~i~ 201 (306)
.++|++.|.
T Consensus 132 l~aGa~iIN 140 (297)
T 1tx2_A 132 IEAGAHIIN 140 (297)
T ss_dssp HHHTCCEEE
T ss_pred HHcCCCEEE
Confidence 556888775
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=93.69 E-value=1.7 Score=37.73 Aligned_cols=118 Identities=15% Similarity=0.090 Sum_probs=72.7
Q ss_pred HHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-------CCChHHHH
Q psy4398 115 RALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-------FHNEADTI 186 (306)
Q Consensus 115 ~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-------g~~~~~~~ 186 (306)
.|.+..+.+++ |||.|||+-|+ +.-..+.-.++|+.+++. +.-+..-+.. -.++...+
T Consensus 86 ~~~~yl~~~k~lGf~~iEiS~G~-------------i~l~~~~~~~~I~~~~~~-G~~v~~EvG~k~~~~~~~~~~~~~I 151 (251)
T 1qwg_A 86 KFDEFLNECEKLGFEAVEISDGS-------------SDISLEERNNAIKRAKDN-GFMVLTEVGKKMPDKDKQLTIDDRI 151 (251)
T ss_dssp CHHHHHHHHHHHTCCEEEECCSS-------------SCCCHHHHHHHHHHHHHT-TCEEEEEECCSSHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHcCCCEEEECCCc-------------ccCCHHHHHHHHHHHHHC-CCEEeeeccccCCcccCCCCHHHHH
Confidence 45666677766 99999998554 223455566777777664 2222222221 12456789
Q ss_pred HHHHHHHHcCCcEEEEcccCCC---CCC--CCCCcHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHH
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKA---ERP--RHRNRIEMIRTLTQHLKIP-VIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~---~~~--~~p~~~~~v~~i~~~~~ip-via~GGI~s~~~~~~~l~ 248 (306)
+.++...++||+.|.+-+|... +-+ .+....+.+.++.+.++.- +|.--= +.+.-...++
T Consensus 152 ~~~~~~LeAGA~~ViiEarEsG~~iGi~~~~g~~r~d~v~~i~~~l~~eklifEAp--~k~qq~~fI~ 217 (251)
T 1qwg_A 152 KLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAP--QKSQQVAFIL 217 (251)
T ss_dssp HHHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEECC--SHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEeeecccCCcccCCCCCCCcHHHHHHHHHhCChhhEEEECC--ChHHHHHHHH
Confidence 9999999999999999988643 222 2345668888888877432 444332 2444444443
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.19 Score=46.34 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
++..+.++.+.++|+|.|+++.... +. ...++.++.+++.+ ++|||+ |+|.|+++++.+.+.|+
T Consensus 99 ~~~~e~~~~a~~aGvdvI~id~a~G---~~-~~~~e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~~aGa 163 (361)
T 3r2g_A 99 ENELQRAEALRDAGADFFCVDVAHA---HA-KYVGKTLKSLRQLLGSRCIMA-GNVATYAGADYLASCGA 163 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCC---SS-HHHHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC---Cc-HhHHHHHHHHHHhcCCCeEEE-cCcCCHHHHHHHHHcCC
Confidence 5678899999999999999864321 11 12468899999987 788887 66889999999998865
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.84 Score=39.18 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=70.2
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC--
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-- 180 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-- 180 (306)
..+.++ .++++.. ..++. +.|.|+||-. +.++. ++.+++..++|++=-+++..
T Consensus 73 ~~v~v~-v~~~ei~---~~i~~~~ld~vQLHG~----------------E~~~~----~~~l~~~~~~~viKa~~v~~~~ 128 (228)
T 4aaj_A 73 FLVSTM-VGFSEWA---MAIERTGAQYIQVHSN----------------ALPQT----IDTLKKEFGVFVMKAFRVPTIS 128 (228)
T ss_dssp EEEECC-CCHHHHH---HHHHHHTCSEEEECSC----------------CCHHH----HHHHHHHHCCEEEEEEECCSSC
T ss_pred EEEecc-CchHHHH---HHHHhccchheecccc----------------cCHHH----HHHHhhccCceEEEEEEecccc
Confidence 444443 3455443 34444 8899999721 23444 45556666778765555421
Q ss_pred -C-hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 181 -N-EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 181 -~-~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
. .++...+...+....+|++.+... ++.....+|++++.+... .|+|.+||++ +++..++++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~LlDs~---GGtG~~fDW~~~~~~~~~--~p~iLAGGL~-peNV~~Ai~~ 193 (228)
T 4aaj_A 129 KNPEEDANRLLSEISRYNADMVLLDTG---AGSGKLHDLRVSSLVARK--IPVIVAGGLN-AENVEEVIKV 193 (228)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEEC----------CCCHHHHHHHHH--SCEEEESSCC-TTTHHHHHHH
T ss_pred cchhhhHHHHHHHHhccCCCEEccCCC---CCCcCcCChHHHHHhhhc--CCeEEECCCC-HHHHHHHHHH
Confidence 1 234555666677788999988752 122224688888877654 6999999986 6777777763
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=93.53 E-value=1.3 Score=36.88 Aligned_cols=121 Identities=18% Similarity=0.107 Sum_probs=72.4
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEE--EeccC
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSC--KIRVF 179 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~v--Kir~g 179 (306)
++++.+--.+.++..+.++.+..|+|.||+.+ |+. ...-.++++.+|+. .+.|+.+ |+.
T Consensus 2 ~li~a~D~~~~~~~~~~~~~~~~~~diie~G~--p~~--------------~~~g~~~i~~ir~~~~~~~i~~~~~~~-- 63 (211)
T 3f4w_A 2 KLQLALDELTLPEAMVFMDKVVDDVDIIEVGT--PFL--------------IREGVNAIKAIKEKYPHKEVLADAKIM-- 63 (211)
T ss_dssp EEEEEECSCCHHHHHHHHHHHGGGCSEEEECH--HHH--------------HHHTTHHHHHHHHHCTTSEEEEEEEEC--
T ss_pred cEEEEeCCCCHHHHHHHHHHhhcCccEEEeCc--HHH--------------HhccHHHHHHHHHhCCCCEEEEEEEec--
Confidence 35566656677887777776656899999864 441 01113578888876 4778754 444
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcH-HHHHHHHhhCCCcEEE-ecCCCCH-HHHHHHHHhhh
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI-EMIRTLTQHLKIPVIA-NGGSKEI-VDYGGVFSLNC 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~-~~v~~i~~~~~ipvia-~GGI~s~-~~~~~~l~~~v 251 (306)
.. ...+++.+.++|+|++++|.... ..++ ++++.+++ .+++++. .=+..++ +.++.+.+.++
T Consensus 64 ~~---~~~~~~~~~~~Gad~v~v~~~~~------~~~~~~~~~~~~~-~g~~~~v~~~~~~t~~~~~~~~~~~g~ 128 (211)
T 3f4w_A 64 DG---GHFESQLLFDAGADYVTVLGVTD------VLTIQSCIRAAKE-AGKQVVVDMICVDDLPARVRLLEEAGA 128 (211)
T ss_dssp SC---HHHHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHHH-HTCEEEEECTTCSSHHHHHHHHHHHTC
T ss_pred cc---hHHHHHHHHhcCCCEEEEeCCCC------hhHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 22 12458888999999999986521 1122 33344443 3666654 2334454 44666666544
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=1.3 Score=40.41 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+.+...+.|+.+++ |++.+-...-.|.+.. ..|-+ + . +.-.++++.+++..++|+..-+- +.++. +
T Consensus 117 es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~--~~f~g-l--g-~egl~~l~~~~~e~Gl~~~te~~---d~~~~-~-- 184 (350)
T 1vr6_A 117 EGREMLMETAHFLSELGVKVLRGGAYKPRTSP--YSFQG-L--G-EKGLEYLREAADKYGMYVVTEAL---GEDDL-P-- 184 (350)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECBSCCCCCST--TSCCC-C--T-HHHHHHHHHHHHHHTCEEEEECS---SGGGH-H--
T ss_pred CCHHHHHHHHHHHHHcCCCeeeeeEEeCCCCh--HhhcC-C--C-HHHHHHHHHHHHHcCCcEEEEeC---CHHHH-H--
Confidence 367788888888875 9999888777665422 12211 1 1 23345556667778999887554 33333 2
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC-CHHHHHHHHHhh
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK-EIVDYGGVFSLN 250 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~-s~~~~~~~l~~~ 250 (306)
.+++. +|.+-|-+++. .++++++++. .++.||+..-|.. |++++..+++..
T Consensus 185 -~l~~~-vd~lkIgAr~~-------~n~~LL~~va-~~~kPVilk~G~~~tl~ei~~Ave~i 236 (350)
T 1vr6_A 185 -KVAEY-ADIIQIGARNA-------QNFRLLSKAG-SYNKPVLLKRGFMNTIEEFLLSAEYI 236 (350)
T ss_dssp -HHHHH-CSEEEECGGGT-------TCHHHHHHHH-TTCSCEEEECCTTCCHHHHHHHHHHH
T ss_pred -HHHHh-CCEEEECcccc-------cCHHHHHHHH-ccCCcEEEcCCCCCCHHHHHHHHHHH
Confidence 33445 89999987753 3678889888 5699999999997 999999888863
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.39 Score=40.30 Aligned_cols=75 Identities=12% Similarity=0.167 Sum_probs=56.6
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHH
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIP-VIANGGSKEIVDYGGVF 247 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ip-via~GGI~s~~~~~~~l 247 (306)
..|+..-++ +.+.++..+.++.+.+.|++.|++...+ +...+.++++++.+++| +++.|++.+.++++.++
T Consensus 6 ~~~i~~~i~-~~d~~~~~~~~~~~~~~G~~~i~l~~~~-------~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~ 77 (212)
T 2v82_A 6 KLPLIAILR-GITPDEALAHVGAVIDAGFDAVEIPLNS-------PQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALA 77 (212)
T ss_dssp SSCEEEECT-TCCHHHHHHHHHHHHHHTCCEEEEETTS-------TTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHH
T ss_pred CCCEEEEEe-CCCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHH
Confidence 345555554 3577889999999999999999996543 33467788888877766 45678899999888888
Q ss_pred Hhhh
Q psy4398 248 SLNC 251 (306)
Q Consensus 248 ~~~v 251 (306)
+.++
T Consensus 78 ~~Ga 81 (212)
T 2v82_A 78 RMGC 81 (212)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 8754
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.40 E-value=1.8 Score=38.15 Aligned_cols=125 Identities=13% Similarity=0.113 Sum_probs=84.9
Q ss_pred eEEEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCC
Q psy4398 104 IILQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHN 181 (306)
Q Consensus 104 ~ivql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~ 181 (306)
+|+-.++ .+.+...+.++.+++ |+|.+-...--|.+.. .+|-+ + . +.-.++++.+++..++|+..-+- +
T Consensus 41 vIAgpc~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~--~~f~g-~--g-~~gl~~l~~~~~~~Gl~~~te~~---d 111 (276)
T 1vs1_A 41 VIAGPCSVESWEQVREAALAVKEAGAHMLRGGAFKPRTSP--YSFQG-L--G-LEGLKLLRRAGDEAGLPVVTEVL---D 111 (276)
T ss_dssp EEEECSBCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSST--TSCCC-C--T-HHHHHHHHHHHHHHTCCEEEECC---C
T ss_pred EEEecCCCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCCh--hhhcC-C--C-HHHHHHHHHHHHHcCCcEEEecC---C
Confidence 4445654 367788888888875 9999888777665421 12211 1 1 33345556667778999887655 3
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC-CHHHHHHHHHhh
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK-EIVDYGGVFSLN 250 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~-s~~~~~~~l~~~ 250 (306)
.+.. +.+++. +|.+-|-+++. .++++++++.+ ++.||+..-|.. +++++..+++..
T Consensus 112 ~~~~----~~l~~~-vd~~kIgs~~~-------~n~~ll~~~a~-~~kPV~lk~G~~~t~~ei~~Ave~i 168 (276)
T 1vs1_A 112 PRHV----ETVSRY-ADMLQIGARNM-------QNFPLLREVGR-SGKPVLLKRGFGNTVEELLAAAEYI 168 (276)
T ss_dssp GGGH----HHHHHH-CSEEEECGGGT-------TCHHHHHHHHH-HTCCEEEECCTTCCHHHHHHHHHHH
T ss_pred HHHH----HHHHHh-CCeEEECcccc-------cCHHHHHHHHc-cCCeEEEcCCCCCCHHHHHHHHHHH
Confidence 3322 334456 89999987753 36778888885 589999999997 999999888753
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.33 Score=42.74 Aligned_cols=121 Identities=7% Similarity=-0.072 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcccccEEEEeccC-CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-----------------CcH
Q psy4398 156 IACNILTTLISNLSIPVSCKIRVF-HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-----------------NRI 217 (306)
Q Consensus 156 ~~~eiv~~v~~~~~~pv~vKir~g-~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-----------------~~~ 217 (306)
.+.+..+..++.=...+..-+..| ++.+.+.++++.++++|+|.|.+.-...+....+| .-+
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~ 83 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCF 83 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 355666666654445566666665 67899999999999999999998643333222222 126
Q ss_pred HHHHHHHhh-CCCcEEEecCCCCH-----HH-HHHHHHhhhhhccccCCC-CCchHHHHHHHHHhcCCC
Q psy4398 218 EMIRTLTQH-LKIPVIANGGSKEI-----VD-YGGVFSLNCAFLRNHYPV-EKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 218 ~~v~~i~~~-~~ipvia~GGI~s~-----~~-~~~~l~~~v~vGrall~~-p~~~~~~l~~~~~~~g~~ 278 (306)
+.++++++. +++|++.-+=.+.+ +. ++++.+.|+ ---++.| |.-...++.+.++++|++
T Consensus 84 ~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGv--dgvii~Dlp~ee~~~~~~~~~~~gl~ 150 (267)
T 3vnd_A 84 DIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGV--DSVLIADVPVEESAPFSKAAKAHGIA 150 (267)
T ss_dssp HHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTC--CEEEETTSCGGGCHHHHHHHHHTTCE
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC--CEEEeCCCCHhhHHHHHHHHHHcCCe
Confidence 788999988 79999987532211 11 233333332 0011222 221223777888888877
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=93.30 E-value=0.23 Score=45.88 Aligned_cols=91 Identities=9% Similarity=0.106 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcE
Q psy4398 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPV 231 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipv 231 (306)
+++...+.++.+++.-..++.+-+. .+ .+..+.++.+.++|+|.|+++... + . .+..++.++++++.+ ++||
T Consensus 80 s~e~~~~~i~~vk~~~~l~vga~vg--~~-~~~~~~~~~lieaGvd~I~idta~--G-~-~~~~~~~I~~ik~~~p~v~V 152 (366)
T 4fo4_A 80 SIEQQAAQVHQVKISGGLRVGAAVG--AA-PGNEERVKALVEAGVDVLLIDSSH--G-H-SEGVLQRIRETRAAYPHLEI 152 (366)
T ss_dssp CHHHHHHHHHHHHTTTSCCCEEECC--SC-TTCHHHHHHHHHTTCSEEEEECSC--T-T-SHHHHHHHHHHHHHCTTCEE
T ss_pred CHHHHHHHHHHHHhcCceeEEEEec--cC-hhHHHHHHHHHhCCCCEEEEeCCC--C-C-CHHHHHHHHHHHHhcCCCce
Confidence 4677778888888753333333332 32 235677888999999999985321 1 1 112357788999998 7888
Q ss_pred EEecCCCCHHHHHHHHHhhh
Q psy4398 232 IANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 232 ia~GGI~s~~~~~~~l~~~v 251 (306)
|+ |.+.+.++++++.+.|+
T Consensus 153 i~-G~v~t~e~A~~a~~aGA 171 (366)
T 4fo4_A 153 IG-GNVATAEGARALIEAGV 171 (366)
T ss_dssp EE-EEECSHHHHHHHHHHTC
T ss_pred Ee-eeeCCHHHHHHHHHcCC
Confidence 76 66789999999998865
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=93.29 E-value=1.6 Score=38.89 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=71.8
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.+.|.|++-.++-... . +.+.+.+|.+.| |+..+.+.+++.+ +. .+++||.+|-.
T Consensus 86 ~~~Glp~~te~~d~~~--~----~~l~~~vd~~kI--------------gA~~~~n~~Ll~~----~a-~~~kPV~lk~G 140 (292)
T 1o60_A 86 DTFGVKIITDVHEIYQ--C----QPVADVVDIIQL--------------PAFLARQTDLVEA----MA-KTGAVINVKKP 140 (292)
T ss_dssp HHHCCEEEEECCSGGG--H----HHHHTTCSEEEE--------------CGGGTTCHHHHHH----HH-HTTCEEEEECC
T ss_pred HHcCCcEEEecCCHHH--H----HHHHhcCCEEEE--------------CcccccCHHHHHH----HH-cCCCcEEEeCC
Confidence 3456666665543221 1 112225677766 5556667665444 43 46899999999
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEE-EcccCCCCCCCC-CCcHHHHHHHHhhC-CCcEEE
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIG-VHGRTKAERPRH-RNRIEMIRTLTQHL-KIPVIA 233 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~-v~~~~~~~~~~~-p~~~~~v~~i~~~~-~ipvia 233 (306)
...+.+++...++.+...|..-++ ++..+.. .|.. ..++..+..+++.+ ++||+.
T Consensus 141 ~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~~-~y~~~~~dl~~i~~lk~~~~~~pV~~ 198 (292)
T 1o60_A 141 QFLSPSQMGNIVEKIEECGNDKIILCDRGTNF-GYDNLIVDMLGFSVMKKASKGSPVIF 198 (292)
T ss_dssp TTSCGGGHHHHHHHHHHTTCCCEEEEECCEEC-STTCEECCTTHHHHHHHHTTSCCEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCccccCHHHHHHHHhhCCCCCEEE
Confidence 766788899999999999985555 4443321 2321 15788889999998 899988
|
| >2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.41 Score=42.44 Aligned_cols=121 Identities=14% Similarity=0.098 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
-|.+.+.+..+.+ +. +|+|=++.+. |-...-..+.-.++++.+.+ .+||.+-+.. .+..++++++
T Consensus 16 iD~~~l~~lv~~li~~-v~gl~v~Gtt----------GE~~~Ls~~Er~~v~~~~~~--rvpviaGvg~-~~t~~ai~la 81 (283)
T 2pcq_A 16 LDEEAFRELAQALEPL-VDGLLVYGSN----------GEGVHLTPEERARGLRALRP--RKPFLVGLME-ETLPQAEGAL 81 (283)
T ss_dssp BCHHHHHHHHHHHGGG-SSCCEETCTT----------TTGGGSCHHHHHHHHHTCCC--SSCCEEEECC-SSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhh-CCEEEECCcC----------cCchhcCHHHHHHHHHHHHh--CCcEEEeCCC-CCHHHHHHHH
Confidence 3566777777754 56 8998885332 22222344444667777666 7899988873 4678899999
Q ss_pred HHHHHcCCcEEEEcccCCCCCC-CCCCcHHHHHHHHhhCCCcEEE-e----cCC-CCHHHHHHHHH
Q psy4398 190 KRLEACGIIAIGVHGRTKAERP-RHRNRIEMIRTLTQHLKIPVIA-N----GGS-KEIVDYGGVFS 248 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~-~~p~~~~~v~~i~~~~~ipvia-~----GGI-~s~~~~~~~l~ 248 (306)
+.+++.|+|++.+....-. +. ....-.++.++|.+ ++||+. | .|+ -+++.+.++.+
T Consensus 82 ~~A~~~Gadavlv~~P~y~-~~~~~~~l~~~f~~va~--~lPiilYn~P~~tg~~l~~~~~~~La~ 144 (283)
T 2pcq_A 82 LEAKAAGAMALLATPPRYY-HGSLGAGLLRYYEALAE--KMPLFLYHVPQNTKVDLPLEAVEALAP 144 (283)
T ss_dssp HHHHHHTCSEEEECCCCTT-GGGTTTHHHHHHHHHHH--HSCEEEEECHHHHCCCCCHHHHHHHTT
T ss_pred HHHHhcCCCEEEecCCcCC-CCCCHHHHHHHHHHHhc--CCCEEEEeCccccCcCCCHHHHHHHhc
Confidence 9999999999988643211 11 11113566778887 788765 3 243 46777766643
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.49 Score=41.54 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=57.3
Q ss_pred CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~ 190 (306)
+.+...+-|+ .+++|+|.|+|+.+.+. ....+.+.+++..+++.+++|+++-.. + .+.++
T Consensus 23 ~~~~a~~~a~~~v~~GAdiIDIg~g~~~------------v~~~ee~~rvv~~i~~~~~~pisIDT~---~----~~v~~ 83 (262)
T 1f6y_A 23 DPAPVQEWARRQEEGGARALDLNVGPAV------------QDKVSAMEWLVEVTQEVSNLTLCLDST---N----IKAIE 83 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEBCC----------------CHHHHHHHHHHHHHTTCCSEEEEECS---C----HHHHH
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCC------------CChHHHHHHHHHHHHHhCCCeEEEeCC---C----HHHHH
Confidence 4455555555 44569999999875422 235677888888888777888888655 2 23444
Q ss_pred HHHHc--CCcEEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 191 RLEAC--GIIAIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 191 ~l~~~--G~d~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
+..++ |++.|. +++. ...++-+..+.+..++|+|..
T Consensus 84 aAl~a~~Ga~iINdvs~~--------~d~~~~~~~~~a~~~~~vvlm 122 (262)
T 1f6y_A 84 AGLKKCKNRAMINSTNAE--------REKVEKLFPLAVEHGAALIGL 122 (262)
T ss_dssp HHHHHCSSCEEEEEECSC--------HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhCCCCCEEEECCCC--------cccHHHHHHHHHHhCCcEEEE
Confidence 44444 887776 5542 112323444555567777763
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.98 Score=40.32 Aligned_cols=176 Identities=16% Similarity=0.101 Sum_probs=100.7
Q ss_pred cccccccccCC--c-eEEccCCCCCCHH-HHH-------HHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 21 NANQANINYSN--K-IILAPMVRMNTLP-FRL-------LALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 21 ~~~~~~l~l~n--~-i~lAPm~~~t~~~-~r~-------~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
.++++++.+-+ | +++|--|-+-+.. ... +..+.+.+.++...+.-.++... . .|..+|.
T Consensus 28 ~v~~~~i~~G~~~~l~vIaGPCsies~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~--~--------sf~Glg~ 97 (298)
T 3fs2_A 28 TVKVGNVTFSNSAPLALIAGPCQMETRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSL--K--------AARGIGL 97 (298)
T ss_dssp SEEETTEEECTTSCCEEEEECSBCCCHHHHHHHHHHHHHHHHHHTCCEEEECBCCCCC-------------------CCH
T ss_pred eEEECCEEECCCCceEEEEeCCcCCCHHHHHHHHHHHHHHHHHcCCcEEEEcccccCCCCCC--C--------CcCCcCH
Confidence 45677777753 4 5666666444433 211 22345778888875542121110 0 0110110
Q ss_pred ---CceeeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh
Q psy4398 90 ---GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS 166 (306)
Q Consensus 90 ---~~~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~ 166 (306)
.+.+.+.+.+.|.|++-.++ ++++.. .+.+.+|.+.| |+..+++.+++.+ +.
T Consensus 98 ~~GL~~L~~~~~e~GLpv~Tev~--D~~~v~----~l~~~vd~lkI--------------gA~~~~n~~LLr~----va- 152 (298)
T 3fs2_A 98 EKALEVFSDLKKEYGFPVLTDIH--TEEQCA----AVAPVVDVLQI--------------PAFLCRQTDLLIA----AA- 152 (298)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECC--SHHHHH----HHTTTCSEEEE--------------CGGGTTCHHHHHH----HH-
T ss_pred HHHHHHHHHHHHhcCCeEEEEeC--CHHHHH----HHHhhCCEEEE--------------CccccCCHHHHHH----HH-
Confidence 11223333445667776653 332222 23334777776 4555667775544 33
Q ss_pred cccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEE-cccCCCCCCCC-CCcHHHHHHHHhhCCCcEEE
Q psy4398 167 NLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV-HGRTKAERPRH-RNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 167 ~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v-~~~~~~~~~~~-p~~~~~v~~i~~~~~ipvia 233 (306)
..++||.+|-....+.+++...++.+.+.|.+-|.+ +..+.- .|.. ..|+..+..+++ +++||+.
T Consensus 153 ~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~y-~~~~~~vdl~~i~~lk~-~~~PV~~ 219 (298)
T 3fs2_A 153 RTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVSF-GYNTLVSDMRALPIMAG-LGAPVIF 219 (298)
T ss_dssp HTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEEC-SSSCEECCTTHHHHHHT-TTSCEEE
T ss_pred ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCCCccCHHHHHHHHH-cCCcEEE
Confidence 468999999997667888999999999999876665 544322 2322 147888889998 8999988
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.10 E-value=1.4 Score=39.14 Aligned_cols=121 Identities=11% Similarity=0.128 Sum_probs=77.1
Q ss_pred CCHHHHHHHHH---HHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAK---KVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~---~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~ 186 (306)
.+.+++..... .+. .|+|+|-+.+-.|.. .-|.+...++++..+ +.++++=-.. ....+..
T Consensus 105 Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg-----------~iD~~~~~~Li~~a~---~l~vTFHRAF-D~~~d~~ 169 (287)
T 3iwp_A 105 YSDREIEVMKADIRLAKLYGADGLVFGALTEDG-----------HIDKELCMSLMAICR---PLPVTFHRAF-DMVHDPM 169 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS-----------CBCHHHHHHHHHHHT---TSCEEECGGG-GGCSCHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCC-----------CcCHHHHHHHHHHcC---CCcEEEECch-hccCCHH
Confidence 56666655443 333 499999987654542 126777788887654 2455443221 1112355
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH-hhh
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFS-LNC 251 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~-~~v 251 (306)
+..+.+.+.|++.|-.+|.. ...+..++.++++.+.. +++|++.|||+ .+++.++++ .|+
T Consensus 170 ~Ale~Li~lGvdrILTSG~~----~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~-~~Ni~~l~~~tG~ 232 (287)
T 3iwp_A 170 AALETLLTLGFERVLTSGCD----SSALEGLPLIKRLIEQAKGRIVVMPGGGIT-DRNLQRILEGSGA 232 (287)
T ss_dssp HHHHHHHHHTCSEEEECTTS----SSTTTTHHHHHHHHHHHTTSSEEEECTTCC-TTTHHHHHHHHCC
T ss_pred HHHHHHHHcCCCEEECCCCC----CChHHhHHHHHHHHHHhCCCCEEEECCCcC-HHHHHHHHHhhCC
Confidence 66677778899999887642 11245778888887765 59999999987 567777776 444
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.32 Score=40.56 Aligned_cols=82 Identities=22% Similarity=0.154 Sum_probs=55.6
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEE--EeccC
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSC--KIRVF 179 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~v--Kir~g 179 (306)
++++.+-..+.++..+.++.+..|+|.||+.++. . . .+| .++++++++.. +.|+++ |+.
T Consensus 2 ~li~a~d~~~~~~~~~~~~~~~~~v~~iev~~~~--~--~--~~g----------~~~i~~l~~~~~~~~i~~~l~~~-- 63 (207)
T 3ajx_A 2 KLQVAIDLLSTEAALELAGKVAEYVDIIELGTPL--I--K--AEG----------LSVITAVKKAHPDKIVFADMKTM-- 63 (207)
T ss_dssp EEEEEECCSCHHHHHHHHHHHGGGCSEEEECHHH--H--H--HHC----------THHHHHHHHHSTTSEEEEEEEEC--
T ss_pred eEEEEeCCCCHHHHHHHHHHhhccCCEEEECcHH--H--H--hhC----------HHHHHHHHHhCCCCeEEEEEEec--
Confidence 4566666678888888888776788999995432 0 0 011 33677777766 678776 644
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEccc
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGR 205 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~ 205 (306)
+. ...+++.+.++|+|++++|..
T Consensus 64 -di--~~~~~~~a~~~Gad~v~vh~~ 86 (207)
T 3ajx_A 64 -DA--GELEADIAFKAGADLVTVLGS 86 (207)
T ss_dssp -SC--HHHHHHHHHHTTCSEEEEETT
T ss_pred -Cc--cHHHHHHHHhCCCCEEEEecc
Confidence 31 223567888899999999964
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=92.88 E-value=1.4 Score=38.87 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=72.5
Q ss_pred EEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccC--C
Q psy4398 105 ILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVF--H 180 (306)
Q Consensus 105 ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g--~ 180 (306)
++-+...|. -.|+.++ .|+|.| +- |....+ ..-||-....-..+....-+++|+..+ ..||.+-+..| .
T Consensus 31 i~m~tayDa----~sA~l~e~aG~d~i-lv-GdSl~~-~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY~ 103 (275)
T 3vav_A 31 IAMLTCYDA----SFAALLDRANVDVQ-LI-GDSLGN-VLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYG 103 (275)
T ss_dssp EEEEECCSH----HHHHHHHHTTCSEE-EE-CTTHHH-HTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSCS
T ss_pred EEEEeCcCH----HHHHHHHHcCCCEE-EE-CcHHHH-HHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCCCCCC
Confidence 344555553 3445565 499999 52 211111 112222222234556666677887777 47899999874 3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
+.++..+.+.++.+.|+++|.+-+.. ...+.++.+.++ +||+++.
T Consensus 104 s~~~a~~~a~rl~kaGa~aVklEdg~--------~~~~~i~~l~~~-GIpv~gH 148 (275)
T 3vav_A 104 TPADAFASAVKLMRAGAQMVKFEGGE--------WLAETVRFLVER-AVPVCAH 148 (275)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCG--------GGHHHHHHHHHT-TCCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCch--------hHHHHHHHHHHC-CCCEEEe
Confidence 66778888888888999999997642 234677777764 8999975
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.25 Score=43.72 Aligned_cols=89 Identities=9% Similarity=0.084 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++|+.+++.|+++|++..-. ..+.+ .++.++++++.+++||+.-+.|.|..+++++.+.|+ .++.+.+.+
T Consensus 73 ~p~~~A~~y~~~GA~~isvltd~--~~f~G--s~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~ 148 (272)
T 3qja_A 73 DPAKLAQAYQDGGARIVSVVTEQ--RRFQG--SLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQ 148 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCG--GGHHH--HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCH
T ss_pred CHHHHHHHHHHcCCCEEEEecCh--hhcCC--CHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCH
Confidence 57899999999999999975321 11111 467899999999999999999999988888888754 566555532
Q ss_pred CCchHHHHHHHHHhcCCC
Q psy4398 261 EKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 261 p~~~~~~l~~~~~~~g~~ 278 (306)
.. -.++.+...+.|+.
T Consensus 149 ~~--l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 149 SV--LVSMLDRTESLGMT 164 (272)
T ss_dssp HH--HHHHHHHHHHTTCE
T ss_pred HH--HHHHHHHHHHCCCc
Confidence 11 12455556666765
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=92.58 E-value=0.6 Score=39.34 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
..++++..+.++. .+.|.|+||-. ..++.+.++ +. +.|++--++.... .+. .
T Consensus 61 n~~~~~i~~~~~~--~~ld~vQLHG~----------------e~~~~~~~l----~~--~~~vika~~v~~~-~~l-~-- 112 (203)
T 1v5x_A 61 DQPPEEVLRLMEE--ARLQVAQLHGE----------------EPPEWAEAV----GR--FYPVIKAFPLEGP-ARP-E-- 112 (203)
T ss_dssp SCCHHHHHHHHHH--TTCSEEEECSC----------------CCHHHHHHH----TT--TSCEEEEEECSSS-CCG-G--
T ss_pred CCCHHHHHHHHHh--hCCCEEEECCC----------------CCHHHHHHh----cc--CCCEEEEEEcCCh-Hhh-h--
Confidence 4455555544432 27899999821 245544443 22 5788866775322 112 1
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH---hhhhhccccC
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS---LNCAFLRNHY 258 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~---~~v~vGrall 258 (306)
+.+..+|++.+.... ++.....+|+++..+. ..+.|++..||++ +++..+++. +++-+.+.+=
T Consensus 113 --~~~~~~d~~LlD~~~--gGtG~~fdW~~l~~~~-~~~~p~~LAGGL~-peNV~~ai~~~p~gVDvsSGvE 178 (203)
T 1v5x_A 113 --WADYPAQALLLDGKR--PGSGEAYPRAWAKPLL-ATGRRVILAGGIA-PENLEEVLALRPYALDLASGVE 178 (203)
T ss_dssp --GGGSSCSEEEEECSS--TTSCCCCCGGGGHHHH-HTTSCEEECSSCC-STTHHHHHHHCCSEEEESGGGE
T ss_pred --hhhcCCCEEEEcCCC--CCCCCccCHHHHHhhh-ccCCcEEEECCCC-HHHHHHHHhcCCCEEEeCCcee
Confidence 233448999987643 2333356888877632 2467999999986 666766553 2565666554
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=1 Score=41.23 Aligned_cols=81 Identities=16% Similarity=0.055 Sum_probs=56.1
Q ss_pred ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------------------------------CCCC
Q psy4398 170 IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------------------------------ERPR 212 (306)
Q Consensus 170 ~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------------------------------~~~~ 212 (306)
-|.+..+-...+.+.+.++.++++++|+.+|.++--+.- ....
T Consensus 122 ~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d 201 (352)
T 3sgz_A 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPK 201 (352)
T ss_dssp CEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCC
T ss_pred ccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccC
Confidence 466666664445555777777777788777776421100 0111
Q ss_pred CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 213 HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 213 ~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
+...|+.++.+++.+++||+.-| +.+.++++.+.+.|+
T Consensus 202 ~~~~w~~i~~lr~~~~~PvivK~-v~~~e~A~~a~~~Ga 239 (352)
T 3sgz_A 202 ASFCWNDLSLLQSITRLPIILKG-ILTKEDAELAMKHNV 239 (352)
T ss_dssp TTCCHHHHHHHHHHCCSCEEEEE-ECSHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHhcCCCEEEEe-cCcHHHHHHHHHcCC
Confidence 34579999999999999998765 688999999998865
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=92.41 E-value=0.57 Score=41.05 Aligned_cols=119 Identities=8% Similarity=-0.022 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcccccEEEEecc-CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC-----------------cHH
Q psy4398 157 ACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN-----------------RIE 218 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~-g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~-----------------~~~ 218 (306)
+.+..+..++.-...+..-+-. .++.+++.++++.++++|+|.|.+.-...+....+|. -++
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~ 83 (268)
T 1qop_A 4 YENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFE 83 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHH
Confidence 4455555544322233333333 3667889999999999999999995433332222221 136
Q ss_pred HHHHHHhh-CCCcEEEecCCCC------HHHHHHHHHhhhhhccccC-CCCCchH-HHHHHHHHhcCCC
Q psy4398 219 MIRTLTQH-LKIPVIANGGSKE------IVDYGGVFSLNCAFLRNHY-PVEKLPK-TILYAHCKYKRFE 278 (306)
Q Consensus 219 ~v~~i~~~-~~ipvia~GGI~s------~~~~~~~l~~~v~vGrall-~~p~~~~-~~l~~~~~~~g~~ 278 (306)
.++++++. +++||+..+-.+. .+.++.+.+.|+. +++ .|-...+ ..+.+.++++|++
T Consensus 84 ~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGad---gii~~d~~~e~~~~~~~~~~~~g~~ 149 (268)
T 1qop_A 84 MLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVD---SVLVADVPVEESAPFRQAALRHNIA 149 (268)
T ss_dssp HHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCC---EEEETTCCGGGCHHHHHHHHHTTCE
T ss_pred HHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCC---EEEEcCCCHHHHHHHHHHHHHcCCc
Confidence 78999999 7999987542110 2333444444431 111 1111122 2666778888865
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.48 Score=41.81 Aligned_cols=121 Identities=10% Similarity=-0.052 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcccccEEEEeccC-CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-----------------CcH
Q psy4398 156 IACNILTTLISNLSIPVSCKIRVF-HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-----------------NRI 217 (306)
Q Consensus 156 ~~~eiv~~v~~~~~~pv~vKir~g-~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-----------------~~~ 217 (306)
.+.+..+..++.=...+..-+..| |+.+.+.++++.++++|+|.|.+.-...+....+| .-+
T Consensus 6 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~ 85 (271)
T 3nav_A 6 RYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICF 85 (271)
T ss_dssp HHHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 355666776665455666677765 68899999999999999999998543332222222 125
Q ss_pred HHHHHHHhh-CCCcEEEecCCCC-----HH-HHHHHHHhhhhhccccCCC-CCchHHHHHHHHHhcCCC
Q psy4398 218 EMIRTLTQH-LKIPVIANGGSKE-----IV-DYGGVFSLNCAFLRNHYPV-EKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 218 ~~v~~i~~~-~~ipvia~GGI~s-----~~-~~~~~l~~~v~vGrall~~-p~~~~~~l~~~~~~~g~~ 278 (306)
+.++++++. .++|++.-|=.+. .+ -++++.+.|+ ---++-| |.-...++.+.++++|++
T Consensus 86 ~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGv--dGvIipDlp~ee~~~~~~~~~~~gl~ 152 (271)
T 3nav_A 86 ELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGV--DSVLIADVPTNESQPFVAAAEKFGIQ 152 (271)
T ss_dssp HHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTC--CEEEETTSCGGGCHHHHHHHHHTTCE
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCC--CEEEECCCCHHHHHHHHHHHHHcCCe
Confidence 788999988 7999998763211 12 1233333333 0011222 221223778888899977
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.68 Score=41.72 Aligned_cols=87 Identities=13% Similarity=0.141 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHHhcccccEEEEeccCCC--hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCc
Q psy4398 153 TPDIACNILTTLISNLSIPVSCKIRVFHN--EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIP 230 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~~~pv~vKir~g~~--~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ip 230 (306)
.++.+.+.++.+++.++.|+.|-+-..+. ..+..+.++.+.+.|+|.|++|... | .++++.+++. ++|
T Consensus 51 s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g~-------p--~~~~~~l~~~-gi~ 120 (328)
T 2gjl_A 51 SPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGND-------P--GEHIAEFRRH-GVK 120 (328)
T ss_dssp SHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEESC-------C--HHHHHHHHHT-TCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcCCC-------c--HHHHHHHHHc-CCC
Confidence 47778888899988777777766553210 2345677888889999999998532 2 4677888776 888
Q ss_pred EEEecCCCCHHHHHHHHHhhh
Q psy4398 231 VIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 231 via~GGI~s~~~~~~~l~~~v 251 (306)
++. .+.+.+++..+.+.++
T Consensus 121 vi~--~v~t~~~a~~~~~~Ga 139 (328)
T 2gjl_A 121 VIH--KCTAVRHALKAERLGV 139 (328)
T ss_dssp EEE--EESSHHHHHHHHHTTC
T ss_pred EEe--eCCCHHHHHHHHHcCC
Confidence 885 3778998888877654
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=92.18 E-value=0.93 Score=38.39 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=72.0
Q ss_pred CCCceEEEecCCC-HHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc--EEEE
Q psy4398 100 EKNKIILQIGTAD-PERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP--VSCK 175 (306)
Q Consensus 100 ~~~p~ivql~g~~-~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p--v~vK 175 (306)
.+.++++-+--.| ++....+++.+. .|+|.|.+|... + .+ .++.+.+... | +.|-
T Consensus 57 ~~~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~vTvh~~~-----------G-----~~----~l~~~~~~~~-~~~~~V~ 115 (213)
T 1vqt_A 57 RNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCA-----------G-----YE----SVERALSATD-KHVFVVV 115 (213)
T ss_dssp TTCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGGG-----------C-----HH----HHHHHHHHCS-SEEEEEC
T ss_pred CCCCEEEEeecccCchHHHHHHHHHHHCCCCEEEEeccC-----------C-----HH----HHHHHHHhcC-CCeEEEE
Confidence 4567888874333 444455555554 499999998432 1 11 2333333222 3 2222
Q ss_pred e--ccCCCh-HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHH---H------H
Q psy4398 176 I--RVFHNE-ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV---D------Y 243 (306)
Q Consensus 176 i--r~g~~~-~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~---~------~ 243 (306)
+ +.+... +....+++. .+.|+| +++++ +.++++++.++.| +..+||+--. | .
T Consensus 116 ~lts~~~~l~~~v~~~a~~-~e~G~d-vV~~~-------------~~~~~ir~~~~~~-~v~pGI~~~~~~~dq~rv~t~ 179 (213)
T 1vqt_A 116 KLTSMEGSLEDYMDRIEKL-NKLGCD-FVLPG-------------PWAKALREKIKGK-ILVPGIRMEVKADDQKDVVTL 179 (213)
T ss_dssp CCTTSCCCHHHHHHHHHHH-HHHTCE-EECCH-------------HHHHHHTTTCCSC-EEECCBC---------CCBCH
T ss_pred EeCCCCHHHHHHHHHHHHH-hcCCCE-EEEcH-------------HHHHHHHHHCCCC-EEECCCCCCCCccchhhcCCH
Confidence 1 211112 556778888 999999 55421 4667888888777 7888886321 1 4
Q ss_pred HHHHHhh---hhhccccCCCC
Q psy4398 244 GGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 244 ~~~l~~~---v~vGrall~~p 261 (306)
++ +++| +.+||+++..+
T Consensus 180 ~~-i~aGad~iVvGR~I~~a~ 199 (213)
T 1vqt_A 180 EE-MKGIANFAVLGREIYLSE 199 (213)
T ss_dssp HH-HTTTCSEEEESHHHHTSS
T ss_pred HH-HHCCCCEEEEChhhcCCC
Confidence 56 6664 49999998643
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=92.02 E-value=0.51 Score=40.20 Aligned_cols=126 Identities=12% Similarity=0.163 Sum_probs=74.4
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF 179 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g 179 (306)
...++.+|...+..++.+..+.+.+ |+|.+++-.- | |... .+..+-.++++++++.++.|+.|-+=.
T Consensus 6 ~~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~--------D--g~fv-~~~~~~~~~~~~lr~~~~~~~~v~lmv- 73 (228)
T 1h1y_A 6 AAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIM--------D--GHFV-PNLTIGAPVIQSLRKHTKAYLDCHLMV- 73 (228)
T ss_dssp CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEE--------B--SSSS-SCBCBCHHHHHHHHTTCCSEEEEEEES-
T ss_pred CCeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEe--------c--CCcC-cchhhCHHHHHHHHhhcCCcEEEEEEe-
Confidence 3457778888888888888887765 9999888531 1 1100 111112367777887776676654443
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCc-HHHHHHHHhhCCCcEEEecCC-CCHHHHHHHHH
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNR-IEMIRTLTQHLKIPVIANGGS-KEIVDYGGVFS 248 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~-~~~v~~i~~~~~ipvia~GGI-~s~~~~~~~l~ 248 (306)
.+. .++++.+.++|+|++++|+.... .. .+.++++++. ++.++..=.- ++.+..+....
T Consensus 74 ~d~---~~~i~~~~~agad~v~vH~~~~~------~~~~~~~~~i~~~-g~~igv~~~p~t~~e~~~~~~~ 134 (228)
T 1h1y_A 74 TNP---SDYVEPLAKAGASGFTFHIEVSR------DNWQELIQSIKAK-GMRPGVSLRPGTPVEEVFPLVE 134 (228)
T ss_dssp SCG---GGGHHHHHHHTCSEEEEEGGGCT------TTHHHHHHHHHHT-TCEEEEEECTTSCGGGGHHHHH
T ss_pred cCH---HHHHHHHHHcCCCEEEECCCCcc------cHHHHHHHHHHHc-CCCEEEEEeCCCCHHHHHHHHh
Confidence 233 33466667799999999976422 23 4567777665 4444333222 33444555544
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.78 Score=40.70 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=73.8
Q ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 96 TCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 96 ~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
.+.+.|.|++-.++-.. +.. .+.+.+|.+.| |+..+++.+++.+ +. .+++||.+|
T Consensus 86 ~~~e~Glp~~Tev~d~~--~v~----~l~~~vd~lqI--------------gA~~~~n~~LLr~----va-~~gkPVilK 140 (285)
T 3sz8_A 86 VKARFGVPVITDVHEAE--QAA----PVAEIADVLQV--------------PAFLARQTDLVVA----IA-KAGKPVNVK 140 (285)
T ss_dssp HHHHHCCCEEEECCSGG--GHH----HHHTTCSEEEE--------------CGGGTTCHHHHHH----HH-HTSSCEEEE
T ss_pred HHHhcCCeEEEEeCCHH--HHH----HHHHhCCEEEE--------------CccccCCHHHHHH----HH-ccCCcEEEe
Confidence 33445667776654322 221 22223677766 4555667775544 33 368999999
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEE-cccCCCCCCCC-CCcHHHHHHHHhhC-CCcEEE
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGV-HGRTKAERPRH-RNRIEMIRTLTQHL-KIPVIA 233 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v-~~~~~~~~~~~-p~~~~~v~~i~~~~-~ipvia 233 (306)
-....+.+++...++.+.+.|.+-|.+ |..+.- .|.. ..|+..+..+++.+ ++||+.
T Consensus 141 ~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~y-~~~~~~vdl~~i~~lk~~~~~~pV~~ 200 (285)
T 3sz8_A 141 KPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSF-GYDNLVVDMLGFRQMAETTGGCPVIF 200 (285)
T ss_dssp CCTTSCGGGTHHHHHHHHHTTCCCEEEEECCEEC-SSSCEECCTTHHHHHHHHTTSCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCC-CCCcCccCHHHHHHHHHhCCCCCEEE
Confidence 997667888899999999999876665 544422 2322 25788999999999 599988
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.02 E-value=1.2 Score=38.06 Aligned_cols=135 Identities=12% Similarity=0.038 Sum_probs=77.7
Q ss_pred CC-ceEEEecCCCH-HHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEEEec
Q psy4398 101 KN-KIILQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSCKIR 177 (306)
Q Consensus 101 ~~-p~ivql~g~~~-~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir 177 (306)
+. +++.-+--.|. +....+++.+.+. |.+.+|.... . .+.+...++...+. .++-+...++
T Consensus 52 ~~~~VflDlK~~DI~nTv~~~~~~~~~~-d~vTVh~~~G-----------~----~~~~~~a~~~~~~~~~~v~vLts~s 115 (222)
T 4dbe_A 52 DVEEIIVDFKLADIGYIMKSIVERLSFA-NSFIAHSFIG-----------V----KGSLDELKRYLDANSKNLYLVAVMS 115 (222)
T ss_dssp CCSEEEEEEEECSCHHHHHHHHTTCTTC-SEEEEESTTC-----------T----TTTHHHHHHHHHHTTCEEEEEEECS
T ss_pred CCCeEEEEeeecchHHHHHHHHHHHHhC-CEEEEEcCcC-----------c----HHHHHHHHHHHHhcCCcEEEEEeCC
Confidence 45 67777754443 3444444444334 9999984431 0 11233334433321 1222333444
Q ss_pred c-CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCH-HHHHHHHHhh---hh
Q psy4398 178 V-FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI-VDYGGVFSLN---CA 252 (306)
Q Consensus 178 ~-g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~-~~~~~~l~~~---v~ 252 (306)
. ++......++++.++++|+|++++++. .-+.++.+++.++-.++.++||+-- .+..++++.| +.
T Consensus 116 ~~~~~~~~~~~~a~~a~~~g~~GvV~sat----------~p~e~~~ir~~~~~~~~vtPGI~~~g~tp~~a~~~Gad~iV 185 (222)
T 4dbe_A 116 HEGWSTLFADYIKNVIREISPKGIVVGGT----------KLDHITQYRRDFEKMTIVSPGMGSQGGSYGDAVCAGADYEI 185 (222)
T ss_dssp STTCCCTTHHHHHHHHHHHCCSEEEECTT----------CHHHHHHHHHHCTTCEEEECCBSTTSBCTTHHHHHTCSEEE
T ss_pred CcchHHHHHHHHHHHHHHhCCCEEEECCC----------CHHHHHHHHHhCCCCEEEcCCcccCccCHHHHHHcCCCEEE
Confidence 2 221122478889999999999988642 1256677888774467788998732 1455666665 49
Q ss_pred hccccCC--CC
Q psy4398 253 FLRNHYP--VE 261 (306)
Q Consensus 253 vGrall~--~p 261 (306)
+||+++. ||
T Consensus 186 VGR~I~~A~dP 196 (222)
T 4dbe_A 186 IGRSIYNAGNP 196 (222)
T ss_dssp ECHHHHTSSSH
T ss_pred ECHHhcCCCCH
Confidence 9999986 56
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.9 Score=40.53 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=54.3
Q ss_pred HHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEE
Q psy4398 121 KKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200 (306)
Q Consensus 121 ~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i 200 (306)
+.+++|+|.|||+.-+..+... .-+..+..+.+..+++++++. ++|+++-.. + .+.+++..++|++.|
T Consensus 60 ~~v~~GAdIIDIGgeSTrPga~----~v~~~eE~~Rv~pvI~~l~~~-~vpiSIDT~---~----~~Va~aAl~aGa~iI 127 (294)
T 2dqw_A 60 EMVAEGADILDLGAESTRPGAA----PVPVEEEKRRLLPVLEAVLSL-GVPVSVDTR---K----PEVAEEALKLGAHLL 127 (294)
T ss_dssp HHHHHTCSEEEEECC---------------CCHHHHHHHHHHHHHTT-CSCEEEECS---C----HHHHHHHHHHTCSEE
T ss_pred HHHHCCCCEEEECCCcCCCCCC----CCCHHHHHHHHHHHHHHHHhC-CCeEEEECC---C----HHHHHHHHHhCCCEE
Confidence 3455799999999854222100 012234556778888888776 889888666 2 456666666799977
Q ss_pred E-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEec
Q psy4398 201 G-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235 (306)
Q Consensus 201 ~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~G 235 (306)
. +++. ..+-+..+.+..++|+|..-
T Consensus 128 NdVsg~----------~d~~m~~v~a~~~~~vVlmh 153 (294)
T 2dqw_A 128 NDVTGL----------RDERMVALAARHGVAAVVMH 153 (294)
T ss_dssp ECSSCS----------CCHHHHHHHHHHTCEEEEEC
T ss_pred EECCCC----------CChHHHHHHHHhCCCEEEEc
Confidence 5 3321 11233444455588888753
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.4 Score=43.23 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=38.8
Q ss_pred CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 112 DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 112 ~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
+++...+-|+ .+++|+|.|||+.-+..+.....+-.-+..+..+.+..+++++++..++||++-..
T Consensus 47 ~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISIDT~ 113 (314)
T 3tr9_A 47 DLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISVDTS 113 (314)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEEECS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEEeCC
Confidence 4556555555 44579999999875432210000000011233455777888888878899988766
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=2.1 Score=39.36 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=65.4
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC------------------------------C-C-------
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA------------------------------E-R------- 210 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~------------------------------~-~------- 210 (306)
+.|+++-+-...+.+...++++.++++|++.|.++-...- + .
T Consensus 132 ~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~ 211 (368)
T 2nli_A 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGA 211 (368)
T ss_dssp TCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTT
T ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhc
Confidence 4678887754346677889999999999999987642110 0 0
Q ss_pred CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-------hhccccCCCC
Q psy4398 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-------AFLRNHYPVE 261 (306)
Q Consensus 211 ~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-------~vGrall~~p 261 (306)
......|+.++.+++.+++||+.-| +.++++++.+.+.|+ --||.+..+|
T Consensus 212 ~d~~~~~~~i~~lr~~~~~PvivK~-v~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~ 268 (368)
T 2nli_A 212 SKQKISPRDIEEIAGHSGLPVFVKG-IQHPEDADMAIKRGASGIWVSNHGARQLYEAP 268 (368)
T ss_dssp BCSBCCHHHHHHHHHHSSSCEEEEE-ECSHHHHHHHHHTTCSEEEECCGGGTSCSSCC
T ss_pred cCchhhHHHHHHHHHHcCCCEEEEc-CCCHHHHHHHHHcCCCEEEEcCCCcCCCCCCC
Confidence 0123468889999999999998764 688999999998865 2245555555
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=91.74 E-value=1.2 Score=38.52 Aligned_cols=82 Identities=11% Similarity=0.189 Sum_probs=56.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-C--CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEEEec
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-D--VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g--~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir 177 (306)
.|+++.+--.+.+ ++.+.+++ + ++.+++|+.. | ..+=.++++.+++. ..+++++|+-
T Consensus 15 ~~~ilalD~~~l~---~~~~~~~~~~~~v~~~Kv~~d~---------~-------~~~G~~~v~~lr~~~~~v~lD~kl~ 75 (245)
T 1eix_A 15 SPVVVALDYHNRD---DALAFVDKIDPRDCRLKVGKEM---------F-------TLFGPQFVRELQQRGFDIFLDLKFH 75 (245)
T ss_dssp CCEEEEECCSSHH---HHHHHHTTSCTTTCEEEEEHHH---------H-------HHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred CCeEEEECCCCHH---HHHHHHHHhCccCcEEEEcHHH---------H-------HHhCHHHHHHHHHCCCcEEEEeecc
Confidence 4777777555544 45555543 4 7898887443 0 22334577888876 6788999997
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
..+++....++.+.++|+|.+++|.
T Consensus 76 --Dip~t~~~~i~~~~~~Gad~vTvH~ 100 (245)
T 1eix_A 76 --DIPNTAAHAVAAAADLGVWMVNVHA 100 (245)
T ss_dssp --SCHHHHHHHHHHHHHHTCSEEEEBG
T ss_pred --ccHHHHHHHHHHHHhCCCCEEEEec
Confidence 4445556678888999999999985
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=91.70 E-value=1.1 Score=42.46 Aligned_cols=138 Identities=10% Similarity=-0.035 Sum_probs=92.3
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCcEEE
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIG 201 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~ 201 (306)
+.||..+-+.++.... .|. .+++.-.+.++++|+++ ++++.+-...+|+.+++.++++.|++.++.+|-
T Consensus 178 ~~Gf~~~KlKv~~~~~------~G~---~~~~~di~rv~avRea~G~d~~L~vDaN~~wt~~~Ai~~~~~Le~~~l~~iE 248 (455)
T 3fxg_A 178 AMGFWGGKVPLPFCPD------DGH---EGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSYTIELVKACLDLNINWWE 248 (455)
T ss_dssp HHTCSCEEEECCCCGG------GHH---HHHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHTGGGCCSEEE
T ss_pred HcCCCEEEEcCCCCcc------ccc---ccHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHhcccCCcceec
Confidence 3589888887642110 111 13445567788888888 467777777789999999999999999987773
Q ss_pred EcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCC-Cc----hHHHHHHHHHh
Q psy4398 202 VHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVE-KL----PKTILYAHCKY 274 (306)
Q Consensus 202 v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p-~~----~~~~l~~~~~~ 274 (306)
++ ..+.+++..+++++.+ .+||.+.=.+.+..+++++++.+. .+ +--++ .+ .-+.+.+..++
T Consensus 249 -------EP-l~~dd~~~la~L~~~~~~iPIA~gEs~~s~~d~~~li~~~avDi---iq~d~~~~GGItea~kIa~lA~a 317 (455)
T 3fxg_A 249 -------EC-LSPDDTDGFALIKRAHPTVKFTTGEHEYSRYGFRKLVEGRNLDI---IQPDVMWLGGLTELLKVAALAAA 317 (455)
T ss_dssp -------CC-SCGGGGGGHHHHHHHCTTSEEEECTTCCHHHHHHHHHTTCCCSE---ECCCTTTSSCHHHHHHHHHHHHT
T ss_pred -------CC-CCcchHHHHHHHHHhCCCCeEECCCccCCHHHHHHHHHcCCCCE---EEECccccCCHHHHHHHHHHHHH
Confidence 22 2244778889999887 478776666888888888887422 11 11122 11 12367778888
Q ss_pred cCCCCCc
Q psy4398 275 KRFEVPK 281 (306)
Q Consensus 275 ~g~~~~~ 281 (306)
+|++...
T Consensus 318 ~Gv~v~~ 324 (455)
T 3fxg_A 318 YDVPVVP 324 (455)
T ss_dssp TTCCBCC
T ss_pred cCCEEEe
Confidence 8888543
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=3.9 Score=37.84 Aligned_cols=118 Identities=16% Similarity=0.196 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
++.+...+.++.+++ |+|.|-...-.|.+.. ..|-+ + ..+. .+++..+++..++|+..-+- +... ++
T Consensus 153 es~e~a~~~a~~~k~aGa~~vk~q~fkprts~--~~f~g-l--~~eg-l~~L~~~~~~~Gl~~~te~~---d~~~-~~-- 220 (385)
T 3nvt_A 153 ESYEQVAAVAESIKAKGLKLIRGGAFKPRTSP--YDFQG-L--GLEG-LKILKRVSDEYGLGVISEIV---TPAD-IE-- 220 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECBSSCCCSST--TSCCC-C--THHH-HHHHHHHHHHHTCEEEEECC---SGGG-HH--
T ss_pred CCHHHHHHHHHHHHHcCCCeEEcccccCCCCh--HhhcC-C--CHHH-HHHHHHHHHHcCCEEEEecC---CHHH-HH--
Confidence 467788888887865 9999988765544321 11111 1 1233 35666677777999887655 3332 23
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCC-CCHHHHHHHHHhh
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS-KEIVDYGGVFSLN 250 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI-~s~~~~~~~l~~~ 250 (306)
.+.+. +|.+-|.++.. .++++++.+.+ ++.||+..-|. .+++++..+++..
T Consensus 221 -~l~~~-vd~lkIgs~~~-------~n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i 272 (385)
T 3nvt_A 221 -VALDY-VDVIQIGARNM-------QNFELLKAAGR-VDKPILLKRGLSATIEEFIGAAEYI 272 (385)
T ss_dssp -HHTTT-CSEEEECGGGT-------TCHHHHHHHHT-SSSCEEEECCTTCCHHHHHHHHHHH
T ss_pred -HHHhh-CCEEEECcccc-------cCHHHHHHHHc-cCCcEEEecCCCCCHHHHHHHHHHH
Confidence 33456 99999977653 35678888774 68999999998 8999999888763
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.93 Score=40.87 Aligned_cols=81 Identities=12% Similarity=0.053 Sum_probs=54.9
Q ss_pred HHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEe
Q psy4398 158 CNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIAN 234 (306)
Q Consensus 158 ~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~ 234 (306)
.+.++++++.. ..++.|-+. +. +-++.+.++|+|.|-++.. +.+.++++.+.+ +++|.++
T Consensus 219 ~~Av~~ar~~~p~~kIeVEVd---tl----dea~eAl~aGaD~I~LDn~----------~~~~l~~av~~l~~~v~ieaS 281 (320)
T 3paj_A 219 RQAISTAKQLNPGKPVEVETE---TL----AELEEAISAGADIIMLDNF----------SLEMMREAVKINAGRAALENS 281 (320)
T ss_dssp HHHHHHHHHHSTTSCEEEEES---SH----HHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEEEC---CH----HHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEE
Confidence 45666666654 345666555 32 3344455689999999753 345666666655 6899999
Q ss_pred cCCCCHHHHHHHHHhhh---hhccc
Q psy4398 235 GGSKEIVDYGGVFSLNC---AFLRN 256 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v---~vGra 256 (306)
|||+ .+++.++.+.|+ .+|..
T Consensus 282 GGIt-~~~I~~~a~tGVD~isvGal 305 (320)
T 3paj_A 282 GNIT-LDNLKECAETGVDYISVGAL 305 (320)
T ss_dssp SSCC-HHHHHHHHTTTCSEEECTHH
T ss_pred CCCC-HHHHHHHHHcCCCEEEECce
Confidence 9986 888998888776 66653
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=2.7 Score=40.38 Aligned_cols=106 Identities=14% Similarity=0.065 Sum_probs=69.3
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-----------------------C----C-----------
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-----------------------E----R----------- 210 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-----------------------~----~----------- 210 (306)
..|.++.+-.+.+.+.+.+++++++++|+++|.+|--... + .
T Consensus 246 ~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~ 325 (511)
T 1kbi_A 246 KQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKF 325 (511)
T ss_dssp SCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTT
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhc
Confidence 4578888865566677888999999999998776532110 0 0
Q ss_pred CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hh----ccccCCCC-CchHH-HHHHHHHhc
Q psy4398 211 PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AF----LRNHYPVE-KLPKT-ILYAHCKYK 275 (306)
Q Consensus 211 ~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~v----Grall~~p-~~~~~-~l~~~~~~~ 275 (306)
......|+.++++++.+++||+.- |+.+.++++.+.+.|+ .+ ||.+...+ .+..+ .+.+.+.++
T Consensus 326 ~d~~~~~~~i~~lr~~~~~PvivK-gv~~~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~ 398 (511)
T 1kbi_A 326 IDPSLTWKDIEELKKKTKLPIVIK-GVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQR 398 (511)
T ss_dssp BCTTCCHHHHHHHHHHCSSCEEEE-EECSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cChHhHHHHHHHHHHHhCCcEEEE-eCCCHHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhh
Confidence 011235889999999999999976 4567999999888865 22 45443333 22222 555555543
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=91.23 E-value=3 Score=36.99 Aligned_cols=89 Identities=10% Similarity=0.075 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCc-EEEEcccCCCC----CCC-CC-CcHHHHHHHHh
Q psy4398 155 DIACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGII-AIGVHGRTKAE----RPR-HR-NRIEMIRTLTQ 225 (306)
Q Consensus 155 ~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d-~i~v~~~~~~~----~~~-~p-~~~~~v~~i~~ 225 (306)
+.+.+.++..++.. +.|+.+-+. +.+.++..+.++.++++|+| +|.++-..+.. .+. .+ ..++.++.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~ 155 (311)
T 1jub_A 77 DYYLDYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFT 155 (311)
T ss_dssp HHHHHHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHH
Confidence 33334344444344 688888776 46778899999999999999 99986432111 111 11 12467788888
Q ss_pred hCCCcEEE--ecCCCCHHHHHH
Q psy4398 226 HLKIPVIA--NGGSKEIVDYGG 245 (306)
Q Consensus 226 ~~~ipvia--~GGI~s~~~~~~ 245 (306)
.+++||+. ..++ +.++..+
T Consensus 156 ~~~~Pv~vKi~~~~-~~~~~~~ 176 (311)
T 1jub_A 156 FFTKPLGVKLPPYF-DLVHFDI 176 (311)
T ss_dssp TCCSCEEEEECCCC-SHHHHHH
T ss_pred hcCCCEEEEECCCC-CHHHHHH
Confidence 88899886 3443 5555544
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=91.16 E-value=1.7 Score=36.48 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE-------ecCC---CCHHHHHHHHHhh
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA-------NGGS---KEIVDYGGVFSLN 250 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia-------~GGI---~s~~~~~~~l~~~ 250 (306)
+.+...++++.++++|++++++. ..+.++++++.+++|+++ .+++ .+.++++.+++.+
T Consensus 21 ~~~~~~~~a~~~~~~Ga~~i~~~------------~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~G 88 (223)
T 1y0e_A 21 SSFIMSKMALAAYEGGAVGIRAN------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQ 88 (223)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEE------------SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHCCCeeeccC------------CHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCC
Confidence 44678999999999999999873 347889999999999974 2344 4567777777765
Q ss_pred h---hhccccCCCC
Q psy4398 251 C---AFLRNHYPVE 261 (306)
Q Consensus 251 v---~vGrall~~p 261 (306)
+ .++.....+|
T Consensus 89 ad~v~l~~~~~~~p 102 (223)
T 1y0e_A 89 CEVIALDATLQQRP 102 (223)
T ss_dssp CSEEEEECSCSCCS
T ss_pred CCEEEEeeecccCc
Confidence 4 6666655555
|
| >3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=91.11 E-value=4.8 Score=36.79 Aligned_cols=140 Identities=13% Similarity=0.095 Sum_probs=83.8
Q ss_pred CCCceEEEecCCCH---HHHHHHHH-------HH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 100 EKNKIILQIGTADP---ERALEAAK-------KV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 100 ~~~p~ivql~g~~~---~~~~~aa~-------~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
.+.|+++.+-|... +.+..+.+ .+ +.||.-|.+..|. -.++++.+...++++...+ .
T Consensus 98 ~~VPVaLHlDHg~~~~~~~i~~~i~a~~~~~~~~~~~GFtSVMiDgS~-----------lp~eENI~~Tk~vv~~ah~-~ 165 (357)
T 3qm3_A 98 YGVPVILHTDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSE-----------ESLEENLSTCEVYLQKLDA-L 165 (357)
T ss_dssp HTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEECCCTT-----------SCHHHHHHHHHHHHHHHHH-H
T ss_pred CCCcEEEECCCCCccchHHHHHHHHHhHHHHhhhcCCCCCEEEEeCCC-----------CCHHHHHHHHHHHHHHHHH-c
Confidence 46899999987643 12222221 11 3489999996553 2345677888888887754 3
Q ss_pred cccEEEEecc-C-----------------CChHHHHHHHHHHHH-cCCcEEEEcccCCCCCCC-C--CCcHHHHHHHHhh
Q psy4398 169 SIPVSCKIRV-F-----------------HNEADTIALCKRLEA-CGIIAIGVHGRTKAERPR-H--RNRIEMIRTLTQH 226 (306)
Q Consensus 169 ~~pv~vKir~-g-----------------~~~~~~~~~a~~l~~-~G~d~i~v~~~~~~~~~~-~--p~~~~~v~~i~~~ 226 (306)
++.|-.-+.. | -++++..++++..-. .|+|.|-+.=.+..+.|. + ..+++.++++++.
T Consensus 166 gvsVEaELG~igG~Edgv~~~~~~~~~~yT~Peea~~Fv~~tg~~~gvD~LAvaiGt~HG~Yk~g~p~L~~~~L~~i~~~ 245 (357)
T 3qm3_A 166 GVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFGNVHGVYKPGNVSLQPEILKNSQKF 245 (357)
T ss_dssp TCEEEEECCCCCC-----CCSSTTCTTTSCCHHHHHHHHHHHTTTCSCEEEECCSSCCCSSCCSSCCCCCTHHHHHHHHH
T ss_pred CCeEEEEeeeeccccCCccccccccccccCCHHHHHHHHHHhCCCCcccEEEEecCCccCCcCCCCCCCCHHHHHHHHHH
Confidence 6666655543 1 123344444443321 146788765444444442 1 2467777776553
Q ss_pred ----C------CCcEEEecCCCC-HHHHHHHHHhhh
Q psy4398 227 ----L------KIPVIANGGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 227 ----~------~ipvia~GGI~s-~~~~~~~l~~~v 251 (306)
+ ++|++..||-.. .++.+++++.|+
T Consensus 246 i~~~~~~~~~~~vpLVlHGgSG~p~e~i~~ai~~GV 281 (357)
T 3qm3_A 246 VKDKFALNSDKPINFVFHGGSGSELKDIKNAVSYGV 281 (357)
T ss_dssp HHHHTTCSCSCCSCEEECSCTTCCHHHHHHHHHTTE
T ss_pred HHHHhccccCCCCcEEEeCCCCCCHHHHHHHHHCCc
Confidence 2 689999999765 556788888765
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=0.57 Score=41.58 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=56.7
Q ss_pred cccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccC-----CCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHH
Q psy4398 167 NLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT-----KAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV 241 (306)
Q Consensus 167 ~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~-----~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~ 241 (306)
.+..|+.+-++ + .++++.+.++|++.|++.... ..+......+++.++++++.+++|++.+.++.+.+
T Consensus 19 ~~~~~~i~~~~--~-----~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~~~ 91 (297)
T 2zbt_A 19 MFKGGVIMDVT--T-----PEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFV 91 (297)
T ss_dssp GGTTEEEEEES--S-----HHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHH
T ss_pred HhhCCeeeeec--h-----HHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccCCHH
Confidence 34557777666 2 789999999999999873210 01111123467899999999999999988888888
Q ss_pred HHHHHHHhhh
Q psy4398 242 DYGGVFSLNC 251 (306)
Q Consensus 242 ~~~~~l~~~v 251 (306)
+++.+++.++
T Consensus 92 ~~~~~~~aGa 101 (297)
T 2zbt_A 92 EAMILEAIGV 101 (297)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 8888887764
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=90.87 E-value=2.5 Score=38.43 Aligned_cols=123 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred EEec---CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe--ccCC
Q psy4398 106 LQIG---TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI--RVFH 180 (306)
Q Consensus 106 vql~---g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi--r~g~ 180 (306)
+|+. +...+++.+.+..+ |+|.|-+..++ ++.+...++++.+++. +..+.+-+ ....
T Consensus 85 i~~l~~p~~~~~~~i~~a~~a--Gvd~v~I~~~~---------------s~~~~~~~~i~~ak~~-G~~v~~~~~~a~~~ 146 (345)
T 1nvm_A 85 IATLLLPGIGSVHDLKNAYQA--GARVVRVATHC---------------TEADVSKQHIEYARNL-GMDTVGFLMMSHMI 146 (345)
T ss_dssp EEEEECBTTBCHHHHHHHHHH--TCCEEEEEEET---------------TCGGGGHHHHHHHHHH-TCEEEEEEESTTSS
T ss_pred EEEEecCCcccHHHHHHHHhC--CcCEEEEEEec---------------cHHHHHHHHHHHHHHC-CCEEEEEEEeCCCC
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEE------ecCCCCHHHHHHHHHhhh
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIA------NGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia------~GGI~s~~~~~~~l~~~v 251 (306)
+.+...++++.+.+.|++.|.+.+.+....+.. -.++++.+++.+ ++||-. .-+ ......++++|+
T Consensus 147 ~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~P~~--v~~lv~~l~~~~~~~~pi~~H~Hn~~G~a---vAn~laA~~aGa 220 (345)
T 1nvm_A 147 PAEKLAEQGKLMESYGATCIYMADSGGAMSMND--IRDRMRAFKAVLKPETQVGMHAHHNLSLG---VANSIVAVEEGC 220 (345)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHH--HHHHHHHHHHHSCTTSEEEEECBCTTSCH---HHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCccCHHH--HHHHHHHHHHhcCCCceEEEEECCCccHH---HHHHHHHHHcCC
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=90.86 E-value=0.89 Score=40.73 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=62.6
Q ss_pred ecCCCCCCceEEEecC--------CCH-HHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHH
Q psy4398 95 RTCPREKNKIILQIGT--------ADP-ERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTL 164 (306)
Q Consensus 95 ~~~~~~~~p~ivql~g--------~~~-~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v 164 (306)
+.+++.+.|+++.+.. .++ +...++++.+.+ |+|.|-++... +++| .++.+.++++..
T Consensus 149 ~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~-------~~~g-----~~~~~~~vv~~~ 216 (304)
T 1to3_A 149 ELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPL-------YGKG-----ARSDLLTASQRL 216 (304)
T ss_dssp HHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGG-------GGCS-----CHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCc-------CCCC-----CHHHHHHHHHhc
Confidence 3455678888888752 234 667777887775 99988886432 0122 566777777776
Q ss_pred HhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEE
Q psy4398 165 ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGV 202 (306)
Q Consensus 165 ~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v 202 (306)
...+..|. |=+..|.+.++..+.++.+.++|++++.+
T Consensus 217 ~~~~~~P~-Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~v 253 (304)
T 1to3_A 217 NGHINMPW-VILSSGVDEKLFPRAVRVAMEAGASGFLA 253 (304)
T ss_dssp HHTCCSCE-EECCTTSCTTTHHHHHHHHHHTTCCEEEE
T ss_pred cccCCCCe-EEEecCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 55566662 33344566667777777777889998876
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=1.3 Score=38.85 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=44.6
Q ss_pred HHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHH
Q psy4398 113 PERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKR 191 (306)
Q Consensus 113 ~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~ 191 (306)
.+...+-++ .+++|+|.|||..-+-.+.... -+..+..+.+.-+++++++ .++|++|-.+- .+.++.
T Consensus 29 ~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~----vs~eeE~~Rv~pvi~~l~~-~~v~iSIDT~~-------~~Va~~ 96 (270)
T 4hb7_A 29 VETAINRVKAMIDEGADIIDVGGVSTRPGHEM----VTLEEELNRVLPVVEAIVG-FDVKISVDTFR-------SEVAEA 96 (270)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCCCSTTCCC----CCHHHHHHHHHHHHHHHTT-SSSEEEEECSC-------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCccCCCCCCC----CchHHHHHHHHHHHHHhhc-CCCeEEEECCC-------HHHHHH
Confidence 444444444 4567999999975543321100 1122334556677777765 57888887662 355566
Q ss_pred HHHcCCcEEE
Q psy4398 192 LEACGIIAIG 201 (306)
Q Consensus 192 l~~~G~d~i~ 201 (306)
+.++|++.|.
T Consensus 97 al~aGa~iIN 106 (270)
T 4hb7_A 97 CLKLGVDMIN 106 (270)
T ss_dssp HHHHTCCEEE
T ss_pred HHHhccceec
Confidence 6667777665
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.9 Score=40.32 Aligned_cols=89 Identities=8% Similarity=0.034 Sum_probs=57.6
Q ss_pred HHHHHHHHhccc-ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcH-HHHHHHHhhC-CCcEEEe
Q psy4398 158 CNILTTLISNLS-IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI-EMIRTLTQHL-KIPVIAN 234 (306)
Q Consensus 158 ~eiv~~v~~~~~-~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~-~~v~~i~~~~-~ipvia~ 234 (306)
.+.++++++..+ .++.|-+. + .+-++.+.++|+|.|.++..+ |..+ +.++.+++.. ++++.++
T Consensus 182 ~~av~~ar~~~~~~~I~Vev~---t----~eea~eal~aGaD~I~LDn~~-------~~~~~~~v~~l~~~~~~v~ieaS 247 (284)
T 1qpo_A 182 VDALRAVRNAAPDLPCEVEVD---S----LEQLDAVLPEKPELILLDNFA-------VWQTQTAVQRRDSRAPTVMLESS 247 (284)
T ss_dssp HHHHHHHHHHCTTSCEEEEES---S----HHHHHHHGGGCCSEEEEETCC-------HHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeC---C----HHHHHHHHHcCCCEEEECCCC-------HHHHHHHHHHhhccCCCeEEEEE
Confidence 456677766542 25666555 2 355555666999999998642 2122 3344454422 5899999
Q ss_pred cCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 235 GGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
|||+ ++++.++.+.++ .+|+....-|
T Consensus 248 GGIt-~~~i~~~a~tGVD~isvG~l~~~a~ 276 (284)
T 1qpo_A 248 GGLS-LQTAATYAETGVDYLAVGALTHSVR 276 (284)
T ss_dssp SSCC-TTTHHHHHHTTCSEEECGGGTSSBC
T ss_pred CCCC-HHHHHHHHhcCCCEEEECHHHcCCC
Confidence 9985 788888888765 8888666544
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=7.2 Score=33.42 Aligned_cols=132 Identities=10% Similarity=0.070 Sum_probs=73.2
Q ss_pred CceEEEec-CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc--cc--cc--EE
Q psy4398 102 NKIILQIG-TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN--LS--IP--VS 173 (306)
Q Consensus 102 ~p~ivql~-g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~--~~--~p--v~ 173 (306)
.++++-+. +..|+....+++.+. .|+|.|.+|... | .+.+.+.++.+++. .+ .| +.
T Consensus 56 ~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vTvH~~~----------g------~~~l~~~~~~~~~~~~~G~~~~~~la 119 (246)
T 2yyu_A 56 HAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAG----------G------RRMMEAAIEGLDAGTPSGRMRPRCIA 119 (246)
T ss_dssp CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGG----------C------HHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred CeEEEEeecccchHHHHHHHHHHHhcCCCEEEEECCC----------C------HHHHHHHHHHHHhhcccCCcCCCEEE
Confidence 45555543 344555455555454 599999998442 1 23345666666652 23 34 22
Q ss_pred EEeccCCChHH--------------HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCC
Q psy4398 174 CKIRVFHNEAD--------------TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSK 238 (306)
Q Consensus 174 vKir~g~~~~~--------------~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~ 238 (306)
+......+.++ ...+++...+.|.++++.. .++ ++++++..+ .+++..|||+
T Consensus 120 v~~~Ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~------------~~e-i~~lr~~~~~~~i~V~gGI~ 186 (246)
T 2yyu_A 120 VTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCS------------ANE-AAFIKERCGASFLAVTPGIR 186 (246)
T ss_dssp ESSCTTCCHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCCEEECC------------HHH-HHHHHHHHCTTSEEEECCCC
T ss_pred EEeCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCEEEeC------------HHH-HHHHHHhcCCCCEEEeCCcC
Confidence 33211111111 2233333456788887532 235 677777663 5689999998
Q ss_pred CH--H--------HHHHHHHhh---hhhccccCCCCC
Q psy4398 239 EI--V--------DYGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 239 s~--~--------~~~~~l~~~---v~vGrall~~p~ 262 (306)
.- . +..++++.| +.+||+++..+.
T Consensus 187 ~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~d 223 (246)
T 2yyu_A 187 FADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAAD 223 (246)
T ss_dssp CCC-------CCCCHHHHHHHTCSEEEECHHHHTSSS
T ss_pred CCCCCcccccccCCHHHHHHcCCCEEEECHhhcCCCC
Confidence 31 0 355666654 499999987443
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=90.74 E-value=3.3 Score=37.36 Aligned_cols=128 Identities=9% Similarity=-0.032 Sum_probs=73.7
Q ss_pred HHHHHH-HH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHH
Q psy4398 116 ALEAAK-KV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLE 193 (306)
Q Consensus 116 ~~~aa~-~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~ 193 (306)
..+.|+ ++ ++|+|.|+|+.-+..+. + ..-.++...++++++++.+++|+++-=. .+.+.-.+.+++..
T Consensus 82 ~~~~A~~~v~~~GAdiIDIg~eStrP~-------~-~~vs~ee~~~~V~~v~~~~~vPlsIDg~--~~~T~~~eV~eaAl 151 (323)
T 4djd_D 82 PGRWAQKCVAEYGADLIYLKLDGADPE-------G-ANHSVDQCVATVKEVLQAVGVPLVVVGC--GDVEKDHEVLEAVA 151 (323)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGCTT-------T-TCCCHHHHHHHHHHHHHHCCSCEEEECC--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEcCccCCCC-------C-CCCCHHHHHHHHHHHHhhCCceEEEECC--CCCCCCHHHHHHHH
Confidence 444455 44 45999999986543321 1 1123455677889998888999988733 23344567777778
Q ss_pred HcCCcEE-EEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhcc---ccCCCC
Q psy4398 194 ACGIIAI-GVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLR---NHYPVE 261 (306)
Q Consensus 194 ~~G~d~i-~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGr---all~~p 261 (306)
++|++.. .|.+.+.+ +++-+..+....+.|||+.- ..+.+-++++.+.....|= -++-||
T Consensus 152 eagag~~~lINsv~~~-------~~~~m~~laa~~g~~vVlmh-~~d~~~~~~l~~~a~~~GI~~e~IIlDP 215 (323)
T 4djd_D 152 EAAAGENLLLGNAEQE-------NYKSLTAACMVHKHNIIARS-PLDINICKQLNILINEMNLPLDHIVIDP 215 (323)
T ss_dssp HHTTTSCCEEEEEBTT-------BCHHHHHHHHHHTCEEEEEC-SSCHHHHHHHHHHHHTTTCCGGGEEEEC
T ss_pred HhcCCCCCeEEECCcc-------cHHHHHHHHHHhCCeEEEEc-cchHHHHHHHHHHHHHcCCCHHHEEEeC
Confidence 8887631 22222111 23445556666789999865 2345555555543333332 244566
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=90.57 E-value=0.85 Score=40.50 Aligned_cols=82 Identities=10% Similarity=-0.049 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEE
Q psy4398 157 ACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIA 233 (306)
Q Consensus 157 ~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia 233 (306)
+.+.++++++.. ..++.|-+. + .+-++.+.++|+|.|-++.. ..+.++++.+.+ ++++.+
T Consensus 185 i~~Av~~ar~~~~~~~IeVEv~---t----l~ea~eAl~aGaD~I~LDn~----------~~~~l~~av~~~~~~v~iea 247 (287)
T 3tqv_A 185 IAKAVTKAKKLDSNKVVEVEVT---N----LDELNQAIAAKADIVMLDNF----------SGEDIDIAVSIARGKVALEV 247 (287)
T ss_dssp HHHHHHHHHHHCTTSCEEEEES---S----HHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHhhCCCCcEEEEeC---C----HHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhhcCCceEEE
Confidence 345666666543 456666555 2 24445556689999999753 225555555554 689999
Q ss_pred ecCCCCHHHHHHHHHhhh---hhccc
Q psy4398 234 NGGSKEIVDYGGVFSLNC---AFLRN 256 (306)
Q Consensus 234 ~GGI~s~~~~~~~l~~~v---~vGra 256 (306)
+|||+ .+++.++.+.|+ .+|..
T Consensus 248 SGGIt-~~~i~~~a~tGVD~IsvGal 272 (287)
T 3tqv_A 248 SGNID-RNSIVAIAKTGVDFISVGAI 272 (287)
T ss_dssp ESSCC-TTTHHHHHTTTCSEEECSHH
T ss_pred ECCCC-HHHHHHHHHcCCCEEEEChh
Confidence 99995 788888888766 55544
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=90.55 E-value=5.7 Score=33.82 Aligned_cols=133 Identities=14% Similarity=0.183 Sum_probs=81.2
Q ss_pred CCceEEEe------cCCCHHHHHHHHH---HHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc
Q psy4398 101 KNKIILQI------GTADPERALEAAK---KVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI 170 (306)
Q Consensus 101 ~~p~ivql------~g~~~~~~~~aa~---~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~ 170 (306)
+.|+.+=| +.++.+++....+ .++ .|+|+|-+-+-.|.. . =|.+...+++++.. +.
T Consensus 54 ~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg---------~--iD~~~~~~Li~~a~---~~ 119 (224)
T 2bdq_A 54 GISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGILTSNN---------H--IDTEAIEQLLPATQ---GL 119 (224)
T ss_dssp TCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS---------S--BCHHHHHHHHHHHT---TC
T ss_pred CCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC---------C--cCHHHHHHHHHHhC---CC
Confidence 34555555 3356777665544 344 399999986655442 1 26777788887654 45
Q ss_pred cEEEEeccCCCh--HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH
Q psy4398 171 PVSCKIRVFHNE--ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGV 246 (306)
Q Consensus 171 pv~vKir~g~~~--~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~ 246 (306)
++..=... ... .+..+..+.|.+.|++.|.-+|...... -...++.++++.+.. ++-|++.|||+ .+++.++
T Consensus 120 ~vTFHRAF-D~~~~~d~~~ale~L~~lGv~rILTSG~~~~~~--a~~g~~~L~~Lv~~a~~ri~Im~GgGV~-~~Ni~~l 195 (224)
T 2bdq_A 120 PLVFHMAF-DVIPKSDQKKSIDQLVALGFTRILLHGSSNGEP--IIENIKHIKALVEYANNRIEIMVGGGVT-AENYQYI 195 (224)
T ss_dssp CEEECGGG-GGSCTTTHHHHHHHHHHTTCCEEEECSCSSCCC--GGGGHHHHHHHHHHHTTSSEEEECSSCC-TTTHHHH
T ss_pred eEEEECch-hccCCcCHHHHHHHHHHcCCCEEECCCCCCCCc--HHHHHHHHHHHHHhhCCCeEEEeCCCCC-HHHHHHH
Confidence 55443331 112 4456677888889999998766433211 123567777776543 57888889987 4666666
Q ss_pred HHh-hh
Q psy4398 247 FSL-NC 251 (306)
Q Consensus 247 l~~-~v 251 (306)
++. ++
T Consensus 196 ~~~tGv 201 (224)
T 2bdq_A 196 CQETGV 201 (224)
T ss_dssp HHHHTC
T ss_pred HHhhCC
Confidence 643 44
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=1.6 Score=37.72 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=66.3
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-C--CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEEEecc
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-D--VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSCKIRV 178 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g--~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir~ 178 (306)
++++.+--.+.+ ++.+.+++ + ++.+++|+.. | ..+=.++++.+++. ..+++++|+-
T Consensus 6 ~lilalD~~~l~---~~~~~v~~~~~~v~~~Kv~~d~---------~-------~~~G~~~v~~lr~~~~~v~lD~kl~- 65 (246)
T 2yyu_A 6 PFIVALDFPSKQ---EVERFLRPFAGTPLFVKVGMEL---------Y-------YQEGPAIVAFLKEQGHAVFLDLKLH- 65 (246)
T ss_dssp CEEEECCCSSHH---HHHHHHGGGTTSCCEEEECHHH---------H-------HHHTHHHHHHHHHTTCEEEEEEEEC-
T ss_pred CeEEEeCCCCHH---HHHHHHHHhcccccEEEeCHHH---------H-------HHhCHHHHHHHHHCCCeEEEEeecc-
Confidence 566666544544 44444543 3 6888887543 0 12223467777776 5788899997
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcH-HHHHHHHhh--CC--Cc-EEEecCCCC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI-EMIRTLTQH--LK--IP-VIANGGSKE 239 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~-~~v~~i~~~--~~--ip-via~GGI~s 239 (306)
..++.....++.+.++|+|.+++|.-. +...+ +.+..+++. .+ .| +++.-=.++
T Consensus 66 -Dip~t~~~~~~~~~~~Gad~vTvH~~~------g~~~l~~~~~~~~~~~~~G~~~~~~lav~~~Ts 125 (246)
T 2yyu_A 66 -DIPNTVKQAMKGLARVGADLVNVHAAG------GRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTS 125 (246)
T ss_dssp -SCHHHHHHHHHHHHHTTCSEEEEEGGG------CHHHHHHHHHHHHHHSCSSSCCCEEEEESSCTT
T ss_pred -cchHHHHHHHHHHHhcCCCEEEEECCC------CHHHHHHHHHHHHhhcccCCcCCCEEEEEeCCC
Confidence 444555667888899999999999743 11112 345556552 33 45 666554444
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=90.51 E-value=1.3 Score=39.13 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=57.4
Q ss_pred cccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEE-EcccCCCCCCCC-CCcHHHHHHHH
Q psy4398 147 GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIG-VHGRTKAERPRH-RNRIEMIRTLT 224 (306)
Q Consensus 147 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~-v~~~~~~~~~~~-p~~~~~v~~i~ 224 (306)
|+..+++.+++.+ +. .+++||.+|-....+.+++...++.+...|..-++ ++..+.. .|.. ..++..+..++
T Consensus 112 ga~~~~n~~ll~~----~a-~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~~-~~~~~~~dl~~i~~lk 185 (280)
T 2qkf_A 112 PAFLARQTDLVVA----MA-KTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSF-GYDNLVVDMLGFGVMK 185 (280)
T ss_dssp CGGGTTBHHHHHH----HH-HTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEEC-STTCEECCTTHHHHHH
T ss_pred CcccccCHHHHHH----HH-cCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC-CCCccccCHHHHHHHH
Confidence 4555566665444 42 46999999999766788899999999999985555 4543321 2211 14788889999
Q ss_pred hhC-CCcEEE
Q psy4398 225 QHL-KIPVIA 233 (306)
Q Consensus 225 ~~~-~ipvia 233 (306)
+.+ ++||+.
T Consensus 186 ~~~~~~pV~~ 195 (280)
T 2qkf_A 186 QTCGNLPVIF 195 (280)
T ss_dssp HHTTTCCEEE
T ss_pred HhCCCCCEEE
Confidence 998 899998
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=90.50 E-value=1.8 Score=39.02 Aligned_cols=85 Identities=15% Similarity=0.040 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE
Q psy4398 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI 232 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi 232 (306)
.++.+.+.++.+++.++.|+.|.+-. ++ .+..+.++.+.+.|+|.|+++... | .++++.+++. +++|+
T Consensus 61 ~~~~l~~~i~~i~~~~~~p~gVnl~~-~~-~~~~~~~~~~~~~g~d~V~l~~g~-------p--~~~~~~l~~~-g~~v~ 128 (326)
T 3bo9_A 61 KPDDLRKAISELRQKTDKPFGVNIIL-VS-PWADDLVKVCIEEKVPVVTFGAGN-------P--TKYIRELKEN-GTKVI 128 (326)
T ss_dssp CHHHHHHHHHHHHTTCSSCEEEEEET-TS-TTHHHHHHHHHHTTCSEEEEESSC-------C--HHHHHHHHHT-TCEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEec-cC-CCHHHHHHHHHHCCCCEEEECCCC-------c--HHHHHHHHHc-CCcEE
Confidence 57888889999998878888888763 11 235677778888999999997642 2 3566777764 78877
Q ss_pred EecCCCCHHHHHHHHHhhh
Q psy4398 233 ANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v 251 (306)
. .+.+.++++.+.+.++
T Consensus 129 ~--~v~s~~~a~~a~~~Ga 145 (326)
T 3bo9_A 129 P--VVASDSLARMVERAGA 145 (326)
T ss_dssp E--EESSHHHHHHHHHTTC
T ss_pred E--EcCCHHHHHHHHHcCC
Confidence 5 5778999988887654
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=90.42 E-value=2.9 Score=35.68 Aligned_cols=131 Identities=14% Similarity=0.105 Sum_probs=76.1
Q ss_pred HHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEE
Q psy4398 122 KVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200 (306)
Q Consensus 122 ~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i 200 (306)
.+++ |+|.|-|+.+. |+..++ .+.+.++...+ .+.-..+=+. .. .+. +.+.+.+.+.|
T Consensus 80 ~l~~~Ga~~Vllghse-----RR~~~~--------e~~~k~~~A~~-~GL~~ivcVg--e~-~e~----~~~~~~~~~iI 138 (226)
T 1w0m_A 80 NIKEAGGSGVILNHSE-----APLKLN--------DLARLVAKAKS-LGLDVVVCAP--DP-RTS----LAAAALGPHAV 138 (226)
T ss_dssp HHHHHTCCEEEECCTT-----SCCBHH--------HHHHHHHHHHH-TTCEEEEEES--SH-HHH----HHHHHTCCSEE
T ss_pred HHHHcCCCEEEEeeee-----ccCCHH--------HHHHHHHHHHH-CCCEEEEEeC--CH-HHH----HHHhcCCCCEE
Confidence 4444 99999998665 222221 24444544443 3665666666 21 221 34466778877
Q ss_pred EEcccCCCCCCC--CCCc---HHHH-HHHHhhC-CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCCchHH--HH
Q psy4398 201 GVHGRTKAERPR--HRNR---IEMI-RTLTQHL-KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEKLPKT--IL 268 (306)
Q Consensus 201 ~v~~~~~~~~~~--~p~~---~~~v-~~i~~~~-~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~~~~~--~l 268 (306)
-+.++...+.-. .... .+.+ +.+++.. +++|++-|||++.++.+.+... |+-+|.+++.-+.+..+ +|
T Consensus 139 ayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~~~~~i~~l 218 (226)
T 1w0m_A 139 AVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVEL 218 (226)
T ss_dssp EECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHH
T ss_pred EEcChhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcCHHHHHHHH
Confidence 777665433220 0112 2222 3334333 6899999999999999888776 55999999875544443 44
Q ss_pred HHHHH
Q psy4398 269 YAHCK 273 (306)
Q Consensus 269 ~~~~~ 273 (306)
...+.
T Consensus 219 ~~~~~ 223 (226)
T 1w0m_A 219 AKPLS 223 (226)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=90.36 E-value=1.5 Score=39.65 Aligned_cols=85 Identities=8% Similarity=0.073 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEE
Q psy4398 153 TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVI 232 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvi 232 (306)
.++.+.+.++.+++.++.|+.|.+-.. + .+..+.++.+.+.|+|.|.++... | .++++.+++. ++||+
T Consensus 47 ~~~~~~~~i~~i~~~~~~p~gvnl~~~-~-~~~~~~~~~a~~~g~d~V~~~~g~-------p--~~~i~~l~~~-g~~v~ 114 (332)
T 2z6i_A 47 PKEVVKANIDKIKSLTDKPFGVNIMLL-S-PFVEDIVDLVIEEGVKVVTTGAGN-------P--SKYMERFHEA-GIIVI 114 (332)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEEECTT-S-TTHHHHHHHHHHTTCSEEEECSSC-------G--GGTHHHHHHT-TCEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCC-C-CCHHHHHHHHHHCCCCEEEECCCC-------h--HHHHHHHHHc-CCeEE
Confidence 567778888888887778888877631 1 235677788888999999998742 1 2456677664 78887
Q ss_pred EecCCCCHHHHHHHHHhhh
Q psy4398 233 ANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v 251 (306)
.. +.+++.++.+.+.++
T Consensus 115 ~~--v~~~~~a~~~~~~Ga 131 (332)
T 2z6i_A 115 PV--VPSVALAKRMEKIGA 131 (332)
T ss_dssp EE--ESSHHHHHHHHHTTC
T ss_pred EE--eCCHHHHHHHHHcCC
Confidence 53 678888888777654
|
| >3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=90.35 E-value=0.89 Score=39.80 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=56.2
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEEecc--
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCKIRV-- 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~-- 178 (306)
..+++.|.+.+.++..++......|+|.||+ |-|-+. ...+.++.+.+++ ..+.|+.+=+|.
T Consensus 35 pkIcvpl~~~t~~e~~~~~~~~~~gaD~VEl---------RvD~l~------~~~~~~v~~~l~~~~~~~PiI~T~Rt~~ 99 (259)
T 3l9c_A 35 MKIVVPVMPQNIEEANQLDLTRIDSTDIIEW---------RADYLV------KDDILTVAPAIFEKFSGHEVIFTLRTEK 99 (259)
T ss_dssp CEEEEEECCSSHHHHHHCCCTTCCTTCEEEE---------EGGGSC------GGGHHHHHHHHHHHTTTSEEEEECCBGG
T ss_pred cEEEEEecCCCHHHHHHHHHhhccCCCEEEE---------Eecccc------chhHHHHHHHHHHhcCCCcEEEEEeehh
Confidence 3577889999998875322222349999999 334332 1223445555543 347899998886
Q ss_pred --C---CChHHHHHHHHHHHH-cCCcEEEEc
Q psy4398 179 --F---HNEADTIALCKRLEA-CGIIAIGVH 203 (306)
Q Consensus 179 --g---~~~~~~~~~a~~l~~-~G~d~i~v~ 203 (306)
| .+.++..++.+.+.+ .|+|+|.|-
T Consensus 100 EGG~~~~~~~~y~~ll~~~~~~~~~dyIDVE 130 (259)
T 3l9c_A 100 EGGNISLSNEDYLAIIRDIAALYQPDYIDFE 130 (259)
T ss_dssp GTCSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2 234556777777665 799999984
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=90.31 E-value=2.9 Score=35.65 Aligned_cols=135 Identities=14% Similarity=0.047 Sum_probs=76.2
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccc---cccCChHHHHHHHHHHHhcccccEEEE-
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGA---ALLSTPDIACNILTTLISNLSIPVSCK- 175 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~---~l~~~~~~~~eiv~~v~~~~~~pv~vK- 175 (306)
+.++.+|........+.++.+.+++ |+++|||....|... .+.+ ....+++.+.++.+.+++ .++.+..=
T Consensus 9 ~mklg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~~~~ 83 (262)
T 3p6l_A 9 GWRLGMQSYSFHLFPLTEALDKTQELGLKYIEIYPGHKLGG----KWGDKVFDFNLDAQTQKEIKELAAS-KGIKIVGTG 83 (262)
T ss_dssp TEEEEEEGGGGTTSCHHHHHHHHHHTTCCEEEECTTEECCG----GGTTCEESTTCCHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CcEEEEEecccCCCCHHHHHHHHHHcCCCEEeecCCccccc----ccccccccccCCHHHHHHHHHHHHH-cCCeEEEEe
Confidence 4567888765444457777777765 999999976543210 1111 111245556666555544 35443322
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEec--C---CCCHHHHHHHHH
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG--G---SKEIVDYGGVFS 248 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~G--G---I~s~~~~~~~l~ 248 (306)
.......+...+.++.+.+.|+..|+++.. ...|+.+.++.+..++.+..-. + ..+++++.++++
T Consensus 84 ~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~--------~~~~~~l~~~a~~~gv~l~~En~~~~~~~~~~~~~~~ll~ 153 (262)
T 3p6l_A 84 VYVAEKSSDWEKMFKFAKAMDLEFITCEPA--------LSDWDLVEKLSKQYNIKISVHNHPQPSDYWKPENLLKAIS 153 (262)
T ss_dssp EECCSSTTHHHHHHHHHHHTTCSEEEECCC--------GGGHHHHHHHHHHHTCEEEEECCSSSSSSSSHHHHHHHHT
T ss_pred ccCCccHHHHHHHHHHHHHcCCCEEEecCC--------HHHHHHHHHHHHHhCCEEEEEeCCCccccCCHHHHHHHHH
Confidence 111234456788888889999999999742 2345555555555454433321 1 125566666554
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=90.29 E-value=1.3 Score=37.97 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=52.4
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-C--CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc-ccccEEEEecc
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-D--VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN-LSIPVSCKIRV 178 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g--~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir~ 178 (306)
++++.+--.+.+ ++.+.+++ + ++.+++|+.. | ..+=.++++.+++. ..+++++|+-
T Consensus 5 ~lilalD~~~l~---~~~~~~~~~~~~v~~~Kv~~d~---------~-------~~~G~~~v~~l~~~~~~v~lD~kl~- 64 (239)
T 1dbt_A 5 LPIIALDFASAE---ETLAFLAPFQQEPLFVKVGMEL---------F-------YQEGPSIVKQLKERNCELFLDLKLH- 64 (239)
T ss_dssp SCEEECCCSSHH---HHHHHTGGGTTSCCEEEECHHH---------H-------HHHTHHHHHHHHHTTCEEEEEEEEC-
T ss_pred CEEEEeCCCCHH---HHHHHHHHhcccCcEEEECHHH---------H-------HHhCHHHHHHHHHCCCcEEEEeccc-
Confidence 566666544544 44444543 3 6888887442 0 11223467777776 5788899987
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
..+++....++.+.++|+|.+++|.
T Consensus 65 -Dip~t~~~~~~~~~~~Gad~vtvH~ 89 (239)
T 1dbt_A 65 -DIPTTVNKAMKRLASLGVDLVNVHA 89 (239)
T ss_dssp -SCHHHHHHHHHHHHTTTCSEEEEEG
T ss_pred -cchHHHHHHHHHHHhcCCCEEEEeC
Confidence 4445555678888899999999985
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=90.23 E-value=1.1 Score=40.43 Aligned_cols=114 Identities=7% Similarity=0.149 Sum_probs=71.8
Q ss_pred EecCCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHH
Q psy4398 107 QIGTADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEAD 184 (306)
Q Consensus 107 ql~g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~ 184 (306)
.+...+++++.+.++.+ ++||..+-+.+|. ..+ .+.++++|+.+ ++.+.+-...+|+.++
T Consensus 127 ~~~~~~~e~~~~~a~~~~~~G~~~~KiKvg~--------------~~d----~~~v~avr~~~~~~~l~vDaN~~~~~~~ 188 (324)
T 1jpd_X 127 TVVIGTPDQMANSASTLWQAGAKLLKVKLDN--------------HLI----SERMVAIRTAVPDATLIVDANESWRAEG 188 (324)
T ss_dssp EECSCCHHHHHHHHHHHHHTTCSEEEEECCS--------------SCH----HHHHHHHHHHCTTSEEEEECTTCCCSTT
T ss_pred EeeCCCHHHHHHHHHHHHHcCCCEEEEEeCC--------------chH----HHHHHHHHHhCCCCEEEEECcCCCCHHH
Confidence 34556888887766654 5699999997552 011 34567777766 3444454445688889
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
+.++++.+++.++.+|- ++. .+.+++..++++ .++||.+-=.+.+..+++++++
T Consensus 189 a~~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~l~--~~ipIa~dE~~~~~~~~~~~~~ 242 (324)
T 1jpd_X 189 LAARCQLLADLGVAMLE-------QPL-PAQDDAALENFI--HPLPICADESCHTRSNLKALKG 242 (324)
T ss_dssp HHHHHHHHHHTTCCEEE-------CCS-CTTSCGGGGSSC--CSSCEEESTTCSSGGGHHHHBT
T ss_pred HHHHHHHHHhCCCCEEE-------CCC-CCCCHHHHHhcc--CCCCEEEcCCCCCHHHHHHHHh
Confidence 99999999999988774 111 112222223322 4677776666667777766654
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=90.18 E-value=2.1 Score=39.96 Aligned_cols=117 Identities=9% Similarity=-0.012 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--C
Q psy4398 154 PDIACNILTTLISNLS--IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK--I 229 (306)
Q Consensus 154 ~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~--i 229 (306)
++.-.+.++++|++++ +.+.+-...+|+.+++.++++.+++.++..|- ++. .+.+++-.+++++.++ +
T Consensus 205 ~~~d~~~v~avrea~G~~~~L~vDaN~~~~~~~Ai~~~~~l~~~~i~~iE-------qPl-~~~d~~~~~~l~~~~~~~i 276 (415)
T 2p3z_A 205 IRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFNLKWIE-------ECL-PPQQYEGYRELKRNAPAGM 276 (415)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTCCEEE-------CCS-CTTCHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCceEe-------CCC-CcchHHHHHHHHHhcCCCC
Confidence 3445677788888763 45555555578999999999999999887763 222 2458899999999987 8
Q ss_pred cEEEecCCCCHHHHHHHHHhhhhhccccCCCC-Cc---h-HHHHHHHHHhcCCCCCc
Q psy4398 230 PVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-KL---P-KTILYAHCKYKRFEVPK 281 (306)
Q Consensus 230 pvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~~---~-~~~l~~~~~~~g~~~~~ 281 (306)
||.+-=.+.+..+++++++.+ ...+.-++ .+ . -+.+.+..+++|++...
T Consensus 277 pIa~dE~~~~~~~~~~~i~~~---~d~i~ik~~~~GGitea~~ia~lA~~~gi~v~~ 330 (415)
T 2p3z_A 277 MVTSGEHHGTLQSFRTLAETG---IDIMQPDVGWCGGLTTLVEIAALAKSRGQLVVP 330 (415)
T ss_dssp EEEECTTCCSHHHHHHHHHTT---CSEECCCHHHHTCHHHHHHHHHHHHHTTCCBCC
T ss_pred cEEcCCCCCCHHHHHHHHHcC---CCEEEeCccccCCHHHHHHHHHHHHHcCCEEEe
Confidence 877766678888888887753 11222222 11 1 12667778888888544
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=0.73 Score=41.54 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=37.7
Q ss_pred CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 112 DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 112 ~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
+++...+.|+ .+++|+|.|+|+.-+..+.. -.-+..+..+.+..+|+++++..++||++-..
T Consensus 31 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa----~~v~~~eE~~Rv~pvI~~l~~~~~vpiSIDT~ 93 (314)
T 2vef_A 31 ALEQALQQARKLIAEGASMLDIGGESTRPGS----SYVEIEEEIQRVVPVIKAIRKESDVLISIDTW 93 (314)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCC---------CHHHHHHHHHHHHHHHHHHHHHCCCEEEEECS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCC----CCCCHHHHHHHHHHHHHHHHhhCCceEEEeCC
Confidence 3444444444 44569999999975422100 00112345567788888898877889888755
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.92 E-value=1.7 Score=38.92 Aligned_cols=53 Identities=25% Similarity=0.306 Sum_probs=31.4
Q ss_pred HHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH---hcccccEEEEec
Q psy4398 113 PERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI---SNLSIPVSCKIR 177 (306)
Q Consensus 113 ~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~---~~~~~pv~vKir 177 (306)
.+...+.|+ .+++|+|.|+||++.+. ....+.+.+++..++ +..++|+++-.+
T Consensus 36 ~~~a~~~A~~~v~~GAdiIDIg~g~~~------------v~~~eem~rvv~~i~~~~~~~~vpisIDT~ 92 (300)
T 3k13_A 36 YDEALSIARQQVEDGALVIDVNMDDGL------------LDARTEMTTFLNLIMSEPEIARVPVMIDSS 92 (300)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCTT------------SCHHHHHHHHHHHHHTCHHHHTSCEEEECS
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCC------------CCHHHHHHHHHHHHHHhhhcCCCeEEEeCC
Confidence 344444455 34569999999986432 122334444444443 556889888755
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=89.90 E-value=1.1 Score=40.10 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=55.0
Q ss_pred HHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEe
Q psy4398 158 CNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIAN 234 (306)
Q Consensus 158 ~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~ 234 (306)
.+.++++++.. ..++.|-+. +.+ -++.+.++|+|.|-++.. +.+.++++.+.+ ++++.++
T Consensus 197 ~~Av~~~r~~~p~~~ieVEvd---tld----e~~eAl~aGaD~I~LDn~----------~~~~l~~av~~i~~~v~ieaS 259 (298)
T 3gnn_A 197 GEALDAAFALNAEVPVQIEVE---TLD----QLRTALAHGARSVLLDNF----------TLDMMRDAVRVTEGRAVLEVS 259 (298)
T ss_dssp HHHHHHHHHHC--CCCEEEES---SHH----HHHHHHHTTCEEEEEESC----------CHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeC---CHH----HHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEE
Confidence 45566666654 345555554 333 345555689999999753 234555444433 6899999
Q ss_pred cCCCCHHHHHHHHHhhh---hhccccCCCC
Q psy4398 235 GGSKEIVDYGGVFSLNC---AFLRNHYPVE 261 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v---~vGrall~~p 261 (306)
|||+ .+++.++.+.|+ .+|+..+.-|
T Consensus 260 GGI~-~~~i~~~a~tGVD~isvG~lt~sa~ 288 (298)
T 3gnn_A 260 GGVN-FDTVRAIAETGVDRISIGALTKDVR 288 (298)
T ss_dssp SSCS-TTTHHHHHHTTCSEEECGGGGTSCC
T ss_pred cCCC-HHHHHHHHHcCCCEEEECCeecCCC
Confidence 9985 788888888766 7777655433
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=89.90 E-value=6 Score=33.56 Aligned_cols=92 Identities=12% Similarity=-0.079 Sum_probs=54.1
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec-c
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR-V 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir-~ 178 (306)
..++.+|........+.++.+.+++ ||++||+.... + .....++.+.++.+.+++ .++.+..=-. .
T Consensus 17 ~~klg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~---------~--~~~~~~~~~~~~~~~l~~-~gl~i~~~~~~~ 84 (257)
T 3lmz_A 17 PFHLGMAGYTFVNFDLDTTLKTLERLDIHYLCIKDFH---------L--PLNSTDEQIRAFHDKCAA-HKVTGYAVGPIY 84 (257)
T ss_dssp SSEEEECGGGGTTSCHHHHHHHHHHTTCCEEEECTTT---------S--CTTCCHHHHHHHHHHHHH-TTCEEEEEEEEE
T ss_pred ceEEEEEEEeecCCCHHHHHHHHHHhCCCEEEEeccc---------C--CCCCCHHHHHHHHHHHHH-cCCeEEEEeccc
Confidence 4577887665444466777777765 99999997541 0 001234555555555544 3444332111 0
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
....+...+.++.+.+.|+..|+++.
T Consensus 85 ~~~~~~~~~~i~~A~~lGa~~v~~~p 110 (257)
T 3lmz_A 85 MKSEEEIDRAFDYAKRVGVKLIVGVP 110 (257)
T ss_dssp ECSHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEecC
Confidence 12445677777888888888888763
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.88 E-value=8.9 Score=34.94 Aligned_cols=168 Identities=14% Similarity=0.249 Sum_probs=100.9
Q ss_pred ccccccccc--CCceEEccCCCC--CCHH--HHHH--HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCce
Q psy4398 21 NANQANINY--SNKIILAPMVRM--NTLP--FRLL--ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 21 ~~~~~~l~l--~n~i~lAPm~~~--t~~~--~r~~--~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
++.+|++.+ .+|+..=+|+.. .|.. ..+. ..+.||.++=..+-..+. ....+.
T Consensus 18 ~v~VG~v~IGG~~Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~~~~-a~al~~------------------ 78 (366)
T 3noy_A 18 QIRVGNVKIGGDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKED-VEALEE------------------ 78 (366)
T ss_dssp CEEETTEEESTTSCCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCSHHH-HHHHHH------------------
T ss_pred EEEECCEEEcCCCcEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCChHH-HHHHHH------------------
Confidence 355666654 789999999932 2222 2222 247899887543322111 111110
Q ss_pred eeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 93 VFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
+.+ ....|+++-+ +.++.... ..++.|+|.+-||=| ++| +.+.+.+++++.++. ++|+
T Consensus 79 I~~---~~~vPlvaDi-Hf~~~lal---~a~e~G~dklRINPG---------Nig-----~~~~~~~vv~~ak~~-~~pi 136 (366)
T 3noy_A 79 IVK---KSPMPVIADI-HFAPSYAF---LSMEKGVHGIRINPG---------NIG-----KEEIVREIVEEAKRR-GVAV 136 (366)
T ss_dssp HHH---HCSSCEEEEC-CSCHHHHH---HHHHTTCSEEEECHH---------HHS-----CHHHHHHHHHHHHHH-TCEE
T ss_pred HHh---cCCCCEEEeC-CCCHHHHH---HHHHhCCCeEEECCc---------ccC-----chhHHHHHHHHHHHc-CCCE
Confidence 001 1246899887 55553222 334569999999833 233 356778899888775 7787
Q ss_pred EEEeccC------------CCh----HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 173 SCKIRVF------------HNE----ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 173 ~vKir~g------------~~~----~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
-+.+.-| +++ +++.+.++.+++.|.+-|.++....+ -+..++..+.+++..+.|+..
T Consensus 137 RIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~S~----v~~~i~ayr~la~~~dyPLHl 209 (366)
T 3noy_A 137 RIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVSIKGSD----VLQNVRANLIFAERTDVPLHI 209 (366)
T ss_dssp EEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECSS----HHHHHHHHHHHHHHCCCCEEE
T ss_pred EEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeecCC----hHHHHHHHHHHHhccCCCEEE
Confidence 7765442 232 34678899999999999988754321 011345557788888999753
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=89.85 E-value=2.7 Score=35.98 Aligned_cols=102 Identities=21% Similarity=0.223 Sum_probs=64.1
Q ss_pred CCceEEEecCCC-HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE-EEEecc
Q psy4398 101 KNKIILQIGTAD-PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV-SCKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~-~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv-~vKir~ 178 (306)
+.+..|-|+|-+ +++ ++ .++.|+|.+-+.+.-+++.. =.++.+.++++. ...|+ .|.+-
T Consensus 18 ~~~M~VKICGit~~ed-~~---a~~~gaD~iGfIf~~~SpR~----------V~~~~A~~i~~~----~~~~~~~v~v~- 78 (228)
T 4aaj_A 18 GSHMFVKICGIKSLEE-LE---IVEKHADATGVVVNSNSKRR----------IPLEKAREIIEN----SAIPVFLVSTM- 78 (228)
T ss_dssp --CCEEEECCCCSHHH-HH---HHHTTCSEEEEECSSSSTTB----------CCHHHHHHHHHH----CSSCEEEEECC-
T ss_pred CCceEEEECCCCcHHH-HH---HHHcCCCEEEEEecCCCCCC----------CCHHHHHHHHHh----hCCCCEEEecc-
Confidence 456889999965 444 23 34569999999875433311 146666666543 22332 23332
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
.+.+ ++++.+++.+.|.|.+||.. ..+.+.++++.+++|||=+
T Consensus 79 -v~~~---ei~~~i~~~~ld~vQLHG~E---------~~~~~~~l~~~~~~~viKa 121 (228)
T 4aaj_A 79 -VGFS---EWAMAIERTGAQYIQVHSNA---------LPQTIDTLKKEFGVFVMKA 121 (228)
T ss_dssp -CCHH---HHHHHHHHHTCSEEEECSCC---------CHHHHHHHHHHHCCEEEEE
T ss_pred -CchH---HHHHHHHhccchheeccccc---------CHHHHHHHhhccCceEEEE
Confidence 3433 56667788999999999752 3478888888888887644
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=89.75 E-value=1.6 Score=39.00 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=54.7
Q ss_pred HHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEe
Q psy4398 158 CNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIAN 234 (306)
Q Consensus 158 ~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~ 234 (306)
.+.++++|+.. ..++.|-+. + .+-++.+.++|+|.|-+...+ .+.++++.+.+ ++.+.++
T Consensus 195 ~~Av~~ar~~~p~~kIeVEv~---t----l~e~~eAl~aGaDiImLDn~s----------~~~l~~av~~~~~~v~leaS 257 (300)
T 3l0g_A 195 TLAIQRLRKNLKNEYIAIECD---N----ISQVEESLSNNVDMILLDNMS----------ISEIKKAVDIVNGKSVLEVS 257 (300)
T ss_dssp HHHHHHHHHHSSSCCEEEEES---S----HHHHHHHHHTTCSEEEEESCC----------HHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEC---C----HHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHhhcCceEEEEE
Confidence 46666776654 456666555 2 344455556899999987532 24555444444 6899999
Q ss_pred cCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 235 GGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
|||+ ++++.++.+.|+ .+|....
T Consensus 258 GGIt-~~~i~~~A~tGVD~IsvGalth 283 (300)
T 3l0g_A 258 GCVN-IRNVRNIALTGVDYISIGCITN 283 (300)
T ss_dssp SSCC-TTTHHHHHTTTCSEEECGGGTS
T ss_pred CCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 9985 788888888776 6665443
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=89.64 E-value=1.4 Score=36.58 Aligned_cols=74 Identities=9% Similarity=0.080 Sum_probs=56.0
Q ss_pred ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHH
Q psy4398 170 IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK-IPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 170 ~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~-ipvia~GGI~s~~~~~~~l~ 248 (306)
.|+.+=++. .+.++..++++.+.+.|++.|.++-++ +...+.++++++.++ -.+|+.|-+.++++++.+++
T Consensus 10 ~~~i~~~~~-~~~~~~~~~~~~~~~~G~~~iev~~~~-------~~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~ 81 (205)
T 1wa3_A 10 HKIVAVLRA-NSVEEAKEKALAVFEGGVHLIEITFTV-------PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVE 81 (205)
T ss_dssp HCEEEEECC-SSHHHHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHH
T ss_pred CCEEEEEec-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHH
Confidence 466666663 467889999999999999999998653 223566888888763 23567777889999998888
Q ss_pred hhh
Q psy4398 249 LNC 251 (306)
Q Consensus 249 ~~v 251 (306)
.++
T Consensus 82 ~Ga 84 (205)
T 1wa3_A 82 SGA 84 (205)
T ss_dssp HTC
T ss_pred cCC
Confidence 765
|
| >2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A | Back alignment and structure |
|---|
Probab=89.61 E-value=3 Score=35.32 Aligned_cols=84 Identities=12% Similarity=0.126 Sum_probs=59.4
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc----C
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV----F 179 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~----g 179 (306)
+++.|.+.+.++..+.++.. |+|.||+ |-|.+.. ...+.+.+++..+|+. +.|+.+=+|. |
T Consensus 3 icv~l~~~~~~~~~~~~~~~--~~D~vEl---------RvD~l~~---~~~~~v~~~~~~lr~~-~~PiI~T~R~~~eGG 67 (219)
T 2egz_A 3 IAVPLDDTNFSENLKKAKEK--GADIVEL---------RVDQFSD---TSLNYVKEKLEEVHSQ-GLKTILTIRSPEEGG 67 (219)
T ss_dssp EEEEECSTTHHHHHHHHHHH--TCSEEEE---------EGGGCSC---CCHHHHHHHHHHHHHT-TCEEEEECCCGGGTC
T ss_pred EEEEeCCCCHHHHHHHHHHc--CCCEEEE---------Eeccccc---cCHHHHHHHHHHHHhc-CCcEEEEEeehhccC
Confidence 67788888888865544432 8999999 3333311 1246678888888886 7999998886 2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
.+.++..++.+.+.+. +|+|.|.
T Consensus 68 ~~~~~~~~ll~~~~~~-~d~iDvE 90 (219)
T 2egz_A 68 REVKNREELFEELSPL-SDYTDIE 90 (219)
T ss_dssp CCCTTHHHHHHHHTTT-SSEEEEE
T ss_pred CCHHHHHHHHHHHHhc-CCEEEEE
Confidence 2345577777777777 9999985
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=89.58 E-value=8.6 Score=32.93 Aligned_cols=131 Identities=14% Similarity=0.108 Sum_probs=72.3
Q ss_pred CceEEEec-CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc--c-EE-EE
Q psy4398 102 NKIILQIG-TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI--P-VS-CK 175 (306)
Q Consensus 102 ~p~ivql~-g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~--p-v~-vK 175 (306)
.++++-+. +..|+....+++.+. .|+|.|.+|.... .+.+..+++.+++. +. | +. |.
T Consensus 66 ~~v~lD~kl~Dip~t~~~~i~~~~~~Gad~vTvH~~~g----------------~~~l~~~~~~~~~~-G~~~~~~l~v~ 128 (245)
T 1eix_A 66 FDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGG----------------ARMMTAAREALVPF-GKDAPLLIAVT 128 (245)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGC----------------HHHHHHHHHTTGGG-GGGCCEEEEEC
T ss_pred CcEEEEeeccccHHHHHHHHHHHHhCCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCCCCcEEEEE
Confidence 34555543 345555444555454 5999999985421 12344555555442 32 3 21 22
Q ss_pred eccCCC------------hHH-HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHH
Q psy4398 176 IRVFHN------------EAD-TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIV 241 (306)
Q Consensus 176 ir~g~~------------~~~-~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~ 241 (306)
.....+ ..+ ...++....+.|.++++.+. ++ ++++++.. +.+++..|||+.--
T Consensus 129 ~~ts~~~~~l~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~------------~e-i~~lr~~~~~~~i~v~gGI~~~g 195 (245)
T 1eix_A 129 VLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSA------------QE-AVRFKQVFGQEFKLVTPGIRPQG 195 (245)
T ss_dssp SCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCG------------GG-HHHHHHHHCSSSEEEECCBCCTT
T ss_pred ecCCCCHHHHHHhccCCCHHHHHHHHHHHHHHcCCCeEEeCH------------HH-HHHHHHhcCCCCEEEECCcCCCC
Confidence 211111 111 22333334567888875432 24 56666665 46899999998320
Q ss_pred ----------HHHHHHHhh---hhhccccCCCCC
Q psy4398 242 ----------DYGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 242 ----------~~~~~l~~~---v~vGrall~~p~ 262 (306)
+..++++.| +.+||+++..+.
T Consensus 196 ~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~d 229 (245)
T 1eix_A 196 SEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVD 229 (245)
T ss_dssp CCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSS
T ss_pred CCccchhccCCHHHHHHcCCCEEEECHHHcCCCC
Confidence 466666665 499999997543
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=89.56 E-value=2.3 Score=38.58 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=56.5
Q ss_pred cccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCC---CCC---cHHHHHHHHhhCCCcEEEe--cCCC
Q psy4398 167 NLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPR---HRN---RIEMIRTLTQHLKIPVIAN--GGSK 238 (306)
Q Consensus 167 ~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~---~p~---~~~~v~~i~~~~~ipvia~--GGI~ 238 (306)
..+.|+.+.+..+.+.+. +.+.++++|+|+|.++......... .+. .++.++++++.+++||+.- |...
T Consensus 114 ~~~~pv~~~i~~~~~~~~---~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~ 190 (349)
T 1p0k_A 114 NPNGLIFANLGSEATAAQ---AKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGM 190 (349)
T ss_dssp CSSSCEEEEEETTCCHHH---HHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCC
T ss_pred CCCceeEEeecCCCCHHH---HHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 457899988875555443 4466778999999887543221111 111 3578999999999999985 4557
Q ss_pred CHHHHHHHHHhhh
Q psy4398 239 EIVDYGGVFSLNC 251 (306)
Q Consensus 239 s~~~~~~~l~~~v 251 (306)
+.++++.+.+.|+
T Consensus 191 ~~~~a~~a~~~Ga 203 (349)
T 1p0k_A 191 SKASAGKLYEAGA 203 (349)
T ss_dssp CHHHHHHHHHHTC
T ss_pred CHHHHHHHHHcCC
Confidence 8999998888765
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=89.55 E-value=7.5 Score=33.82 Aligned_cols=160 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred CCceEEEe-cCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh----cccccEEE
Q psy4398 101 KNKIILQI-GTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS----NLSIPVSC 174 (306)
Q Consensus 101 ~~p~ivql-~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~----~~~~pv~v 174 (306)
+.++++-+ .+.-++....+++.+.. |+|.+.+|... -.+.+...++..++ ....|..+
T Consensus 56 g~~VflDlK~~DIpnTv~~a~~~~~~~gad~vTVh~~~----------------G~~~~~aa~~~~~~~~~~g~~~~~li 119 (259)
T 3tfx_A 56 GYKIFLDLKMHDIPNTVYNGAKALAKLGITFTTVHALG----------------GSQMIKSAKDGLIAGTPAGHSVPKLL 119 (259)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGG----------------CHHHHHHHHHHHHHHSCTTSCCCEEE
T ss_pred CCcEEEEecccccchHHHHHHHHHHhcCCCEEEEcCCC----------------CHHHHHHHHHHHHHhcccCCCCceEE
Q ss_pred Eecc--CCChHHH--------------HHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCC
Q psy4398 175 KIRV--FHNEADT--------------IALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGS 237 (306)
Q Consensus 175 Kir~--g~~~~~~--------------~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI 237 (306)
-+.. .++.+++ .++|+...++|+|++++++ .-+..+++.+ +-.++.+.||
T Consensus 120 ~Vt~lTS~~~~~l~~~~g~~~~~~e~v~~~A~~a~~~G~dGvV~s~-------------~e~~~ir~~~~~~f~~vtPGI 186 (259)
T 3tfx_A 120 AVTELTSISDDVLRNEQNCRLPMAEQVLSLAKMAKHSGADGVICSP-------------LEVKKLHENIGDDFLYVTPGI 186 (259)
T ss_dssp EECSCTTCCHHHHHHTSCBSSCHHHHHHHHHHHHHHTTCCEEECCG-------------GGHHHHHHHHCSSSEEEECCC
T ss_pred EEEEeCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCEEEECH-------------HHHHHHHhhcCCccEEEcCCc
Q ss_pred CCHH----------HHHHHHHhhh---hhccccCC--CC-CchHHHHHHHHHhcCCCCCcceehhhcc
Q psy4398 238 KEIV----------DYGGVFSLNC---AFLRNHYP--VE-KLPKTILYAHCKYKRFEVPKYETVQYEK 289 (306)
Q Consensus 238 ~s~~----------~~~~~l~~~v---~vGrall~--~p-~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 289 (306)
+-.- +..++++.|+ .+||+++. || ...+.-.++|-+...|--+-+|..-.+|
T Consensus 187 r~~g~~~gDQ~Rv~T~~~a~~aGad~iVvGr~I~~a~dp~~a~~~i~~~~~~~~~~~~~~~~~~~~~~ 254 (259)
T 3tfx_A 187 RPAGNAKDDQSRVATPKMAKEWGSSAIVVGRPITLASDPKAAYEAIKKEFNAENLYFQSHHHHHHWSH 254 (259)
T ss_dssp CCC-----------CHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHTCTTCSCCC---------
T ss_pred CCCCCCcCCccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHHHHHhhccccccccc
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=89.48 E-value=4.5 Score=35.60 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=71.1
Q ss_pred HHHHh-cCCCEEEEc-cCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC--ChHHHHHHHHHHHHc
Q psy4398 120 AKKVE-HDVAAIDIN-MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH--NEADTIALCKRLEAC 195 (306)
Q Consensus 120 a~~~~-~g~d~veln-~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~--~~~~~~~~a~~l~~~ 195 (306)
|+.++ .|||+|=+- .+.-. .-++-....-..+.....+++|...++.||.+-+-.|. +.++..+.++.+.++
T Consensus 29 A~~~~~aG~~ai~vsg~s~a~----~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~v~~l~~a 104 (275)
T 2ze3_A 29 ARLLEAAGFTAIGTTSAGIAH----ARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEHFAAL 104 (275)
T ss_dssp HHHHHHHTCSCEEECHHHHHH----HSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEECcHHHHH----hCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHHHHHHHHc
Confidence 44454 499998774 11100 01111111234566677778888888899999999874 467789999999999
Q ss_pred CCcEEEEcccCC-CCCCCCCC--cHHHHHHHHhhC---CCcEEEecCCCC
Q psy4398 196 GIIAIGVHGRTK-AERPRHRN--RIEMIRTLTQHL---KIPVIANGGSKE 239 (306)
Q Consensus 196 G~d~i~v~~~~~-~~~~~~p~--~~~~v~~i~~~~---~ipvia~GGI~s 239 (306)
|+++|++-+... .++..-|. ..+.++.++++- ++|+..+|....
T Consensus 105 Gaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda 154 (275)
T 2ze3_A 105 GVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDT 154 (275)
T ss_dssp TCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCT
T ss_pred CCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechh
Confidence 999999976542 11211121 233444444442 577777776443
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=89.39 E-value=7.5 Score=33.62 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCCh-------
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNE------- 182 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~------- 182 (306)
|-++..+.+..+.+.+..|++-+ ++|++.....+.+.+.++.+++. ++++. .|.+.
T Consensus 22 glg~~~~~d~Le~~g~yID~lKf------------g~Gt~~l~~~~~l~eki~l~~~~-gV~v~----~GGTl~E~~~~q 84 (251)
T 1qwg_A 22 GLPPKFVEDYLKVCGDYIDFVKF------------GWGTSAVIDRDVVKEKINYYKDW-GIKVY----PGGTLFEYAYSK 84 (251)
T ss_dssp SCCHHHHHHHHHHHGGGCSEEEE------------CTTGGGGSCHHHHHHHHHHHHTT-TCEEE----ECHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhhhhcceEEe------------cCceeeecCHHHHHHHHHHHHHc-CCeEE----CCcHHHHHHHHc
Confidence 56788888888877788999988 57778888889999999998775 44433 32211
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCH--------HHHHH----HHHhh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI--------VDYGG----VFSLN 250 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~--------~~~~~----~l~~~ 250 (306)
....+..+.+.+.|.+.|-++..+.+-.. ....++++.+++. +.-++.-=|..++ +.+-+ -+++|
T Consensus 85 g~~~~yl~~~k~lGf~~iEiS~G~i~l~~--~~~~~~I~~~~~~-G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAG 161 (251)
T 1qwg_A 85 GKFDEFLNECEKLGFEAVEISDGSSDISL--EERNNAIKRAKDN-GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAG 161 (251)
T ss_dssp TCHHHHHHHHHHHTCCEEEECCSSSCCCH--HHHHHHHHHHHHT-TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHcCCCEEEECCCcccCCH--HHHHHHHHHHHHC-CCEEeeeccccCCcccCCCCHHHHHHHHHHHHHCC
Confidence 13678888899999999999987654221 1124566666655 3444444344444 44333 33344
Q ss_pred h--------hhcc--ccCCCC-CchHHHHHHHHHhcCCC
Q psy4398 251 C--------AFLR--NHYPVE-KLPKTILYAHCKYKRFE 278 (306)
Q Consensus 251 v--------~vGr--all~~p-~~~~~~l~~~~~~~g~~ 278 (306)
+ ..|+ .++.+- .+....++..+++-+.+
T Consensus 162 A~~ViiEarEsG~~iGi~~~~g~~r~d~v~~i~~~l~~e 200 (251)
T 1qwg_A 162 ADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDIN 200 (251)
T ss_dssp CSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGG
T ss_pred CcEEEEeeecccCCcccCCCCCCCcHHHHHHHHHhCChh
Confidence 4 3344 666655 66666777888777655
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=89.35 E-value=1.7 Score=37.64 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcccccEEEEecc-CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-------------C----cHH
Q psy4398 157 ACNILTTLISNLSIPVSCKIRV-FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-------------N----RIE 218 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~-g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-------------~----~~~ 218 (306)
+.+.++.+++.-...+..-+-. .++.+++.+.++.++++|+|.|.+.....+....+| . .++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~ 84 (262)
T 1rd5_A 5 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLE 84 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHH
Confidence 3445555554323344444433 356688999999999999999999543222111111 1 256
Q ss_pred HHHHHHhhCCCcEEEec
Q psy4398 219 MIRTLTQHLKIPVIANG 235 (306)
Q Consensus 219 ~v~~i~~~~~ipvia~G 235 (306)
.++++++.+++|++..+
T Consensus 85 ~i~~ir~~~~~Pv~~m~ 101 (262)
T 1rd5_A 85 MLREVTPELSCPVVLLS 101 (262)
T ss_dssp HHHHHGGGCSSCEEEEC
T ss_pred HHHHHHhcCCCCEEEEe
Confidence 78899988899998875
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.14 E-value=0.45 Score=45.64 Aligned_cols=64 Identities=22% Similarity=0.207 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+..+.++.+.++|+|.|.++.... .. +..++.++++++.+ ++||++ |++.+.+.++.+.+.|+
T Consensus 228 ~~~~~~a~~l~~aG~d~I~id~a~g---~~-~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGa 292 (490)
T 4avf_A 228 ADTGERVAALVAAGVDVVVVDTAHG---HS-KGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGA 292 (490)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCC---SB-HHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTC
T ss_pred cchHHHHHHHhhcccceEEecccCC---cc-hhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCC
Confidence 3567788889999999999975421 11 23568899999998 788887 77899999999999865
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=89.13 E-value=1.8 Score=39.10 Aligned_cols=114 Identities=9% Similarity=0.007 Sum_probs=68.5
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCC
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHN 181 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~ 181 (306)
|+...+.+.+.+++ .+.+++||..+-+.+| ++ -.+.++++|+.+ +..+.+-...+|+
T Consensus 121 ~~~~~~~g~~~e~~---~~~~~~G~~~~KiKvg------------------~~-d~~~v~avr~~~~~~~l~vDaN~~~~ 178 (342)
T 2okt_A 121 AYGATASGLSNKQL---ESLKATKPTRIKLKWT------------------PQ-IMHQIRVLRELDFHFQLVIDANESLD 178 (342)
T ss_dssp ECEEEESSCCHHHH---HHHHHHCCSEEEEECC------------------TT-HHHHHHHHTTSSSCCEEEEECTTCCC
T ss_pred eeeEEEecCCHHHH---HHHHHcCCcEEEEEeC------------------HH-HHHHHHHHHHhCCCCeEEEECCCCCC
Confidence 44444524344444 3334569999999654 22 257788888877 3345555555789
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.+++ ++++.+++.++.+|- ++. .+.+++..++ +.+++||.+-=.+.+..++.++++.
T Consensus 179 ~~~A-~~~~~l~~~~i~~iE-------qP~-~~~d~~~~~~--~~~~ipIa~dEs~~~~~~~~~~i~~ 235 (342)
T 2okt_A 179 RQDF-TQLQLLAREQVLYIE-------EPF-KDISMLDEVA--DGTIPPIALDEKATSLLDIINLIEL 235 (342)
T ss_dssp GGGH-HHHHHHGGGCEEEEE-------CCC-SSGGGGGGSC--TTSSCCEEESTTCCCHHHHHHHHHH
T ss_pred HHHH-HHHHHHhhCCCcEEE-------CCC-CCccHHHHHH--hcCCCCEEecCCCCCHHHHHHHHHh
Confidence 9999 999999998877664 111 1123333333 3446666665556666666666553
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.11 E-value=2.7 Score=38.29 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=66.8
Q ss_pred CCCceEEEecCC----CHHH-HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEE
Q psy4398 100 EKNKIILQIGTA----DPER-ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC 174 (306)
Q Consensus 100 ~~~p~ivql~g~----~~~~-~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v 174 (306)
.+.|+.||=..+ +.+. ..+..+..++|+|.|.+- +|. +...+.++.+++.+++|+.+
T Consensus 28 G~~Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRva--vp~----------------~~~a~al~~I~~~~~vPlva 89 (366)
T 3noy_A 28 GDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVA--VPH----------------KEDVEALEEIVKKSPMPVIA 89 (366)
T ss_dssp TTSCCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEE--CCS----------------HHHHHHHHHHHHHCSSCEEE
T ss_pred CCCcEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeC--CCC----------------hHHHHHHHHHHhcCCCCEEE
Confidence 357899995443 2333 333334445699999994 333 12257788888889999999
Q ss_pred EeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCc--EEEecCC
Q psy4398 175 KIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIP--VIANGGS 237 (306)
Q Consensus 175 Kir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ip--via~GGI 237 (306)
-+. .+. ++|..+.++|+|.+-+.+..... ...++.+-+.++..++| |-.|.|-
T Consensus 90 DiH--f~~----~lal~a~e~G~dklRINPGNig~----~~~~~~vv~~ak~~~~piRIGvN~GS 144 (366)
T 3noy_A 90 DIH--FAP----SYAFLSMEKGVHGIRINPGNIGK----EEIVREIVEEAKRRGVAVRIGVNSGS 144 (366)
T ss_dssp ECC--SCH----HHHHHHHHTTCSEEEECHHHHSC----HHHHHHHHHHHHHHTCEEEEEEEGGG
T ss_pred eCC--CCH----HHHHHHHHhCCCeEEECCcccCc----hhHHHHHHHHHHHcCCCEEEecCCcC
Confidence 988 453 45555678999999987543221 11233333333344666 4556663
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.11 E-value=0.79 Score=41.38 Aligned_cols=76 Identities=14% Similarity=0.010 Sum_probs=41.4
Q ss_pred HHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHH
Q psy4398 114 ERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKR 191 (306)
Q Consensus 114 ~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~ 191 (306)
+...+-|+ .+++|+|.|||+.-+-.+. -.-+..+..+.+..+++++++.+ ++||++-..- .+.+++
T Consensus 65 ~~a~~~A~~~v~~GAdIIDIGgeSTrPG-----~~v~~~eEl~Rv~pvI~~l~~~~~~vpISIDT~~-------~~Vaea 132 (318)
T 2vp8_A 65 AAARDAVHRAVADGADVIDVGGVKAGPG-----ERVDVDTEITRLVPFIEWLRGAYPDQLISVDTWR-------AQVAKA 132 (318)
T ss_dssp HHHHHHHHHHHHTTCSEEEEC---------------CHHHHHHHHHHHHHHHHHHSTTCEEEEECSC-------HHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCC-----CCCCHHHHHHHHHHHHHHHHhhCCCCeEEEeCCC-------HHHHHH
Confidence 33344344 4557999999987552210 00112233455666788888876 8898887651 344445
Q ss_pred HHHcCCcEEE
Q psy4398 192 LEACGIIAIG 201 (306)
Q Consensus 192 l~~~G~d~i~ 201 (306)
..++|++.|.
T Consensus 133 Al~aGa~iIN 142 (318)
T 2vp8_A 133 ACAAGADLIN 142 (318)
T ss_dssp HHHHTCCEEE
T ss_pred HHHhCCCEEE
Confidence 5555776554
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=89.04 E-value=0.51 Score=43.52 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=51.6
Q ss_pred ccccEEEEecc----C-CChHHHHHHHHHHHHcCCcEEEEcccC------CCCCCCCC-CcHHHHHHHHhhCCCcEEEe-
Q psy4398 168 LSIPVSCKIRV----F-HNEADTIALCKRLEACGIIAIGVHGRT------KAERPRHR-NRIEMIRTLTQHLKIPVIAN- 234 (306)
Q Consensus 168 ~~~pv~vKir~----g-~~~~~~~~~a~~l~~~G~d~i~v~~~~------~~~~~~~p-~~~~~v~~i~~~~~ipvia~- 234 (306)
-+.|++.-+.. + ++.+...+.++.+ +++++.+|=.. +.+...-. ..++.++++++.+++||+.=
T Consensus 118 p~~~~~anlg~~ql~~~~~~~~~~~av~~~---~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~ 194 (368)
T 3vkj_A 118 PTIPIIANLGMPQLVKGYGLKEFQDAIQMI---EADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKE 194 (368)
T ss_dssp SSSCEEEEEEGGGGGTTCCHHHHHHHHHHT---TCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEEC
T ss_pred cCcceecCcCeeecCCCCCHHHHHHHHHHh---cCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEe
Confidence 36788877775 3 5555555555444 55555554211 11111000 15788999999999999994
Q ss_pred -cCCCCHHHHHHHHHhhh
Q psy4398 235 -GGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 235 -GGI~s~~~~~~~l~~~v 251 (306)
|+-.++++++.+.+.|+
T Consensus 195 vG~g~s~~~A~~l~~aGa 212 (368)
T 3vkj_A 195 SGNGISMETAKLLYSYGI 212 (368)
T ss_dssp SSSCCCHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHhCCC
Confidence 55578999999998876
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=89.03 E-value=2.5 Score=39.22 Aligned_cols=92 Identities=18% Similarity=0.086 Sum_probs=62.9
Q ss_pred cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC------------------------------C-------CC
Q psy4398 169 SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA------------------------------E-------RP 211 (306)
Q Consensus 169 ~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~------------------------------~-------~~ 211 (306)
+.|+++-+-...+.+...++++.++++|++++.++-.... . ..
T Consensus 146 ~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~ 225 (392)
T 2nzl_A 146 EALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDS 225 (392)
T ss_dssp TSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------
T ss_pred CCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcc
Confidence 4688888764456677889999999999999887421100 0 00
Q ss_pred ----------CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-------hhccccCCCC
Q psy4398 212 ----------RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-------AFLRNHYPVE 261 (306)
Q Consensus 212 ----------~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-------~vGrall~~p 261 (306)
.....|+.++++++.+++||+.- |+.+.++++.+.+.|+ --||.+..+|
T Consensus 226 ~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivK-gv~~~e~A~~a~~aGad~I~vs~~ggr~~~~g~ 291 (392)
T 2nzl_A 226 GLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAK-GILRGDDAREAVKHGLNGILVSNHGARQLDGVP 291 (392)
T ss_dssp CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEE-EECCHHHHHHHHHTTCCEEEECCGGGTSSTTCC
T ss_pred hHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEE-ecCCHHHHHHHHHcCCCEEEeCCCCCCcCCCCc
Confidence 11146888999999999999876 4688999999998865 2255555555
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=89.01 E-value=3 Score=36.72 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=69.2
Q ss_pred EEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc-EEEEeccC---C
Q psy4398 106 LQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP-VSCKIRVF---H 180 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir~g---~ 180 (306)
+-+...|. -.|+.++ .|+|.| + .|.-..+. .-++-....-..+.....+++|+..++.| |.+-+..| .
T Consensus 20 ~~~tayDa----~sA~l~e~aG~d~i-l-vGdSl~~~-~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~ 92 (275)
T 1o66_A 20 AMLTAYES----SFAALMDDAGVEML-L-VGDSLGMA-VQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQ 92 (275)
T ss_dssp EEEECCSH----HHHHHHHHTTCCEE-E-ECTTHHHH-TTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSS
T ss_pred EEEeCcCH----HHHHHHHHcCCCEE-E-ECHHHHHH-HcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccC
Confidence 34555553 3455565 499998 4 23222211 12232233345666777778887777654 55665543 2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
+.+++.+.+..+.++|+++|.+-+.. ...+.++.+.++ ++||++.
T Consensus 93 s~~~a~~na~rl~kaGa~aVklEdg~--------e~~~~I~al~~a-gIpV~gH 137 (275)
T 1o66_A 93 SKEQAFAAAAELMAAGAHMVKLEGGV--------WMAETTEFLQMR-GIPVCAH 137 (275)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECSG--------GGHHHHHHHHHT-TCCEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCcH--------HHHHHHHHHHHc-CCCeEee
Confidence 56778888889999999999997641 234556666554 7999843
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=88.99 E-value=0.77 Score=42.81 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 186 IALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+.++.+.++|+|.|.+.... ... ....+.++++++.+++|||+ |++.+.+.++.+.+.|+
T Consensus 146 ~e~~~~lveaGvdvIvldta~---G~~-~~~~e~I~~ik~~~~i~Vi~-g~V~t~e~A~~a~~aGA 206 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAH---GHS-LNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIENGA 206 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSC---CSB-HHHHHHHHHHHTTCCCEEEE-EEECSHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEEeCCC---CCc-ccHHHHHHHHHhcCCCeEEE-eecCCHHHHHHHHHcCC
Confidence 678899999999999874221 111 11357889999988999986 67889999999998865
|
| >2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7 | Back alignment and structure |
|---|
Probab=88.95 E-value=1.2 Score=41.77 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=51.0
Q ss_pred ChHHHHHHHH----HHHHcCCcE-------EEEcccCCCCCCC-CCCcHHHHHHHHhhCCCc-EEE--ecCC-CCHHHHH
Q psy4398 181 NEADTIALCK----RLEACGIIA-------IGVHGRTKAERPR-HRNRIEMIRTLTQHLKIP-VIA--NGGS-KEIVDYG 244 (306)
Q Consensus 181 ~~~~~~~~a~----~l~~~G~d~-------i~v~~~~~~~~~~-~p~~~~~v~~i~~~~~ip-via--~GGI-~s~~~~~ 244 (306)
++++..++++ .|.+.|+|. |.+.-.+.-+.+. ...+++.+++|++.+++| ++. .||- .+.++.+
T Consensus 189 ~PeeA~~Fve~~~~~~~~tGvd~~~~~vi~LAV~iGt~HG~y~~~~ld~e~l~~I~~~v~~P~LVle~HGgSg~~~e~l~ 268 (420)
T 2fiq_A 189 HVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALAQWIENTRMVYEAHSTDYQTRTAYW 268 (420)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHTEEEEECCCSCEECSSCEECCCGGGGHHHHHHHTTSSCEEEESCCTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCCCcccccceEEEEeCCccCCCCCCCCcCHHHHHHHHHhcCCCCEEEecCCCCCCCHHHHH
Confidence 4566777776 777899999 7765554433342 236889999999999999 888 7775 3566778
Q ss_pred HHHHhhh
Q psy4398 245 GVFSLNC 251 (306)
Q Consensus 245 ~~l~~~v 251 (306)
++++.|+
T Consensus 269 ~~v~~Gi 275 (420)
T 2fiq_A 269 ELVRDHF 275 (420)
T ss_dssp HHHHTTE
T ss_pred HHHHcCC
Confidence 8877644
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=88.88 E-value=3.6 Score=35.96 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=68.5
Q ss_pred EEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc-EEEEeccC-C-C
Q psy4398 106 LQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP-VSCKIRVF-H-N 181 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir~g-~-~ 181 (306)
+-+...|. -.|+.+++ |+|.|=+ |....+. .-|+-....-..+....-+++|+..++.| |.+-+.-| . +
T Consensus 20 ~~~tayD~----~sA~l~e~aG~d~ilv--Gdsl~~~-~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~ 92 (264)
T 1m3u_A 20 ATITAYDY----SFAKLFADEGLNVMLV--GDSLGMT-VQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYAT 92 (264)
T ss_dssp EEEECCSH----HHHHHHHHHTCCEEEE--CTTHHHH-TTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSS
T ss_pred EEEeCcCH----HHHHHHHHcCCCEEEE--CHHHHHH-HcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCC
Confidence 34555553 34555654 9999966 4322221 12232233334566666778887777654 55555542 1 5
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
.+++.+.+..+.++|+++|.+-+.. ...+.++.+.++ ++||++
T Consensus 93 ~~~a~~~a~rl~kaGa~aVklEgg~--------e~~~~I~al~~a-gipV~g 135 (264)
T 1m3u_A 93 PEQAFENAATVMRAGANMVKIEGGE--------WLVETVQMLTER-AVPVCG 135 (264)
T ss_dssp HHHHHHHHHHHHHTTCSEEECCCSG--------GGHHHHHHHHHT-TCCEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcH--------HHHHHHHHHHHC-CCCeEe
Confidence 6778888889999999999987641 234566666554 799984
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=88.85 E-value=1.9 Score=38.09 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=35.3
Q ss_pred CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 112 DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 112 ~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
+++...+.|+ .+++|+|.|+|+.-+..+.. -.-+..+..+.+..+++++++. ++||++-..
T Consensus 27 ~~~~a~~~a~~~v~~GAdiIDIGgestrpga----~~v~~~eE~~Rv~pvi~~l~~~-~~piSIDT~ 88 (280)
T 1eye_A 27 DLDDAVKHGLAMAAAGAGIVDVGGESSRPGA----TRVDPAVETSRVIPVVKELAAQ-GITVSIDTM 88 (280)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECC------------------HHHHHHHHHHHHHT-TCCEEEECS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCCCC----CCCCHHHHHHHHHHHHHHhhcC-CCEEEEeCC
Confidence 5666666555 44579999999964421100 0012234566777888888776 889988755
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=88.78 E-value=1.9 Score=39.41 Aligned_cols=81 Identities=6% Similarity=0.037 Sum_probs=51.8
Q ss_pred cccccEEEEeccCCChHHHHHHHHHHH---HcCCcEEEEccc--CCCC-CCC--CC-CcHHHHHHHHhhCCCcEEEecCC
Q psy4398 167 NLSIPVSCKIRVFHNEADTIALCKRLE---ACGIIAIGVHGR--TKAE-RPR--HR-NRIEMIRTLTQHLKIPVIANGGS 237 (306)
Q Consensus 167 ~~~~pv~vKir~g~~~~~~~~~a~~l~---~~G~d~i~v~~~--~~~~-~~~--~p-~~~~~v~~i~~~~~ipvia~GGI 237 (306)
..+.|+.+-+. |.+.++..+.++.++ +.|+|+|.+.-. ...+ ... .| ...++++.+++.+++||+.=-..
T Consensus 124 ~~~~pvivsI~-G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p 202 (354)
T 4ef8_A 124 YGKKPLFLSMS-GLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPP 202 (354)
T ss_dssp TTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECC
T ss_pred cCCCcEEEEec-cCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCeEEEecC
Confidence 34678887763 467889999999998 679999997432 2111 111 11 12456788888889998765443
Q ss_pred C-CHHHHHHHHH
Q psy4398 238 K-EIVDYGGVFS 248 (306)
Q Consensus 238 ~-s~~~~~~~l~ 248 (306)
. |.++..++.+
T Consensus 203 ~~d~~~~~~~a~ 214 (354)
T 4ef8_A 203 YFDFAHFDAAAE 214 (354)
T ss_dssp CCSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 2 4555555443
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=88.73 E-value=6.4 Score=33.53 Aligned_cols=122 Identities=8% Similarity=-0.036 Sum_probs=71.5
Q ss_pred HHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEE
Q psy4398 122 KVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200 (306)
Q Consensus 122 ~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i 200 (306)
.++ .|+|.|-|+.+. |+..++ .+.+.++...+ .+.-..+=+. .. .+. +.+.+.+.+.|
T Consensus 83 ~l~~~Ga~~Vllghse-----RR~~~~--------e~~~k~~~A~~-~GL~~ivcVg--e~-~e~----~~~~~~~~~iI 141 (225)
T 1hg3_A 83 AVKEAGAVGTLLNHSE-----NRMILA--------DLEAAIRRAEE-VGLMTMVCSN--NP-AVS----AAVAALNPDYV 141 (225)
T ss_dssp HHHHTTCCEEEESCGG-----GCCBHH--------HHHHHHHHHHH-HTCEEEEEES--SH-HHH----HHHHTTCCSEE
T ss_pred HHHHcCCCEEEECcch-----hcCCHH--------HHHHHHHHHHH-CCCEEEEEeC--CH-HHH----HHHhcCCCCEE
Confidence 444 499999997664 222221 13444444433 2555555555 21 221 34456677877
Q ss_pred EEcccCCCCCC----C-CCCcHHHH-HHHHhhC-CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCCch
Q psy4398 201 GVHGRTKAERP----R-HRNRIEMI-RTLTQHL-KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEKLP 264 (306)
Q Consensus 201 ~v~~~~~~~~~----~-~p~~~~~v-~~i~~~~-~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~~~ 264 (306)
-+.++...+.- . .+...+.+ +.+++.. +++|++-|||++.++.+.+... |+-+|++++.-+.+.
T Consensus 142 ayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~~~ 215 (225)
T 1hg3_A 142 AVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPE 215 (225)
T ss_dssp EECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHH
T ss_pred EEeChhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcCHH
Confidence 77766543222 1 12113332 3344433 6899999999999999888776 459999998654443
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=88.71 E-value=3.5 Score=34.80 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=61.3
Q ss_pred HHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC
Q psy4398 160 ILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239 (306)
Q Consensus 160 iv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s 239 (306)
+++.+++ .|+..=+|. .+.++..++++.+.+.|++.+.+.-++ +...+.++++++.+.-.+++.|-+.+
T Consensus 9 ~~~~l~~---~~~i~v~r~-~~~~~~~~~~~al~~gGv~~iel~~k~-------~~~~~~i~~l~~~~~~~~vgagtvi~ 77 (214)
T 1wbh_A 9 AESILTT---GPVVPVIVV-KKLEHAVPMAKALVAGGVRVLNVTLRT-------ECAVDAIRAIAKEVPEAIVGAGTVLN 77 (214)
T ss_dssp HHHHHHS---CSEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEESCS-------TTHHHHHHHHHHHCTTSEEEEESCCS
T ss_pred HHHHHHH---CCEEEEEEC-CCHHHHHHHHHHHHHcCCCEEEEeCCC-------hhHHHHHHHHHHHCcCCEEeeCEEEE
Confidence 3444443 356655663 467789999999999999999997442 34567888899988656778888999
Q ss_pred HHHHHHHHHhhh
Q psy4398 240 IVDYGGVFSLNC 251 (306)
Q Consensus 240 ~~~~~~~l~~~v 251 (306)
.++++.+++.++
T Consensus 78 ~d~~~~A~~aGA 89 (214)
T 1wbh_A 78 PQQLAEVTEAGA 89 (214)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998754
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=88.71 E-value=2.1 Score=36.59 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=55.6
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc--ccccEEEEeccC
Q psy4398 102 NKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN--LSIPVSCKIRVF 179 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~--~~~pv~vKir~g 179 (306)
.++++.+--.+.++..+.++.+...++.+.++... - -.+| + ++++++++. ..+.+++|+-
T Consensus 13 ~~lilAlD~~~~~~a~~~v~~~~~~v~~~Kvg~~l--f----~~~G------~----~~v~~l~~~~g~~v~lD~Kl~-- 74 (228)
T 3m47_A 13 NRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPL--V----LSEG------M----DIIAEFRKRFGCRIIADFKVA-- 74 (228)
T ss_dssp GGEEEECCCCSHHHHHHHHHTTTTTCSEEEEEHHH--H----HHHC------T----HHHHHHHHHHCCEEEEEEEEC--
T ss_pred CCeEEEeCCCCHHHHHHHHHHcCCcccEEEEcHHH--H----HhcC------H----HHHHHHHhcCCCeEEEEEeec--
Confidence 46888876667666665555544457888885421 1 0122 2 345556553 4577888887
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.-..+....++.+.++|+|.+++|+
T Consensus 75 DipnTv~~~~~~~~~~gad~vtvh~ 99 (228)
T 3m47_A 75 DIPETNEKICRATFKAGADAIIVHG 99 (228)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEES
T ss_pred ccHhHHHHHHHHHHhCCCCEEEEec
Confidence 4444567788889999999999986
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=2.1 Score=39.94 Aligned_cols=117 Identities=9% Similarity=-0.003 Sum_probs=78.0
Q ss_pred HHHHHHHHHhccc--ccEEEEecc------CCChHHHHHHHHHHHHcCCcE-EEEcccCCCCCCC-C--CCcHHHHHHHH
Q psy4398 157 ACNILTTLISNLS--IPVSCKIRV------FHNEADTIALCKRLEACGIIA-IGVHGRTKAERPR-H--RNRIEMIRTLT 224 (306)
Q Consensus 157 ~~eiv~~v~~~~~--~pv~vKir~------g~~~~~~~~~a~~l~~~G~d~-i~v~~~~~~~~~~-~--p~~~~~v~~i~ 224 (306)
..+.++++|+.++ +.+.+-... +|+.+++.++++.|++.|+.. +-+ +++.. + +.+++-.++++
T Consensus 218 d~~~v~aiR~~~G~~~~L~vDan~~~~~~~~~~~~~A~~~~~~L~~~~~~~~l~i-----EqP~~~~~~~~d~~~~~~l~ 292 (413)
T 1kko_A 218 LSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYI-----EGPVDAGNKPDQIRMLTAIT 292 (413)
T ss_dssp HHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEE-----ECCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCeEEEECCCccccccCCCHHHHHHHHHHHHhccCCcceEE-----ECCcCCCCCcccHHHHHHHH
Confidence 3478899988874 445555555 688899999999999976541 122 22221 1 34788889999
Q ss_pred hh-----CCCcEEEecCCCCHHHHHHHHHhhh----hhccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 225 QH-----LKIPVIANGGSKEIVDYGGVFSLNC----AFLRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 225 ~~-----~~ipvia~GGI~s~~~~~~~l~~~v----~vGrall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
+. +++||.+-=-+++.++++++++.+. ++=-. ..+-...-+.+.++.+++|++.
T Consensus 293 ~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~-~~GGitea~~i~~~A~~~gi~~ 355 (413)
T 1kko_A 293 KELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTP-DLGGIHNIVDAVLYCNKHGMEA 355 (413)
T ss_dssp HHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEECGG-GGSSTHHHHHHHHHHHHHTCEE
T ss_pred HhcccCCCCCcEEcCCCCCCHHHHHHHHHhCCCCEEEeCcc-ccCCHHHHHHHHHHHHHcCCeE
Confidence 88 8899988777899999999887532 11000 0011122247778888999873
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.60 E-value=5 Score=34.09 Aligned_cols=81 Identities=20% Similarity=0.146 Sum_probs=59.7
Q ss_pred HHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC
Q psy4398 160 ILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239 (306)
Q Consensus 160 iv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s 239 (306)
+++.+++. |+..=+|. .+.++..++++.+.+.|++.|.+.-++ +...+.++++++.+.--+++.|-+.+
T Consensus 10 ~~~~l~~~---~ii~vir~-~~~~~~~~~~~al~~gGv~~iel~~k~-------~~~~~~i~~l~~~~~~l~vgaGtvl~ 78 (224)
T 1vhc_A 10 IIEKLREL---KIVPVIAL-DNADDILPLADTLAKNGLSVAEITFRS-------EAAADAIRLLRANRPDFLIAAGTVLT 78 (224)
T ss_dssp HHHHHHHH---CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHHHHHCTTCEEEEESCCS
T ss_pred HHHHHHHC---CeEEEEeC-CCHHHHHHHHHHHHHcCCCEEEEeccC-------chHHHHHHHHHHhCcCcEEeeCcEee
Confidence 44444443 55555553 467789999999999999999997432 34567888899988545667777889
Q ss_pred HHHHHHHHHhhh
Q psy4398 240 IVDYGGVFSLNC 251 (306)
Q Consensus 240 ~~~~~~~l~~~v 251 (306)
.++++.+++.++
T Consensus 79 ~d~~~~A~~aGA 90 (224)
T 1vhc_A 79 AEQVVLAKSSGA 90 (224)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
Confidence 999999988754
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=88.59 E-value=0.59 Score=44.88 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
++..+.++.+.++|+|.|.++.... . ....++.++++++.+ ++||++ |++.+.+.++.+++.|+
T Consensus 230 ~d~~~~a~~l~~aG~d~I~id~a~g---~-~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGa 294 (496)
T 4fxs_A 230 PGNEERVKALVEAGVDVLLIDSSHG---H-SEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGV 294 (496)
T ss_dssp SCCHHHHHHHHHTTCSEEEEECSCT---T-SHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTC
T ss_pred cchHHHHHHHHhccCceEEeccccc---c-chHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCC
Confidence 3457778888899999999975531 1 123568899999998 889987 77899999999998865
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=88.51 E-value=0.57 Score=45.08 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
+..+.++.+.++|+|.|.++... .+. ...++.++++++.+ ++||++ |++.+.++++.+.+.|+
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~~---G~~-~~~~~~i~~i~~~~~~~pvi~-~~v~t~~~a~~l~~aGa 318 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSSQ---GNS-VYQIAMVHYIKQKYPHLQVIG-GNVVTAAQAKNLIDAGV 318 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCSC---CCS-HHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHcCCCEEEeeccC---Ccc-hhHHHHHHHHHHhCCCCceEe-cccchHHHHHHHHHcCC
Confidence 35677888889999999997542 111 12468899999999 899986 67899999999998876
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=88.51 E-value=1.9 Score=38.52 Aligned_cols=132 Identities=8% Similarity=0.071 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C------CCh
Q psy4398 111 ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F------HNE 182 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g------~~~ 182 (306)
.+.+++..+ ++.|+|.|.+-.++- ....+...+.+..+..+.+.++++.+++. +..+.+-+.. + .+.
T Consensus 82 ~~~~~i~~a---~~~g~~~v~i~~~~s-d~~~~~~l~~s~~e~l~~~~~~v~~ak~~-G~~v~~~i~~~~~~~~~~~~~~ 156 (307)
T 1ydo_A 82 PNQRGLENA---LEGGINEACVFMSAS-ETHNRKNINKSTSESLHILKQVNNDAQKA-NLTTRAYLSTVFGCPYEKDVPI 156 (307)
T ss_dssp CSHHHHHHH---HHHTCSEEEEEEESS-HHHHHTTTCSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECTTCBTTTBCCCH
T ss_pred CCHHhHHHH---HhCCcCEEEEEeecC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEecCCcCCCCCH
Confidence 455444333 234999988855432 22223334444444556667777777664 5555444432 1 356
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhC-CCcEEEec----CCCCHHHHHHHHHhhh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHL-KIPVIANG----GSKEIVDYGGVFSLNC 251 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~-~ipvia~G----GI~s~~~~~~~l~~~v 251 (306)
+...++++.+.++|+|.|.+-+... ...|. ..++++.+++.+ ++||-.-+ |.. ......++++|+
T Consensus 157 ~~~~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla-~AN~laAv~aGa 227 (307)
T 1ydo_A 157 EQVIRLSEALFEFGISELSLGDTIG---AANPAQVETVLEALLARFPANQIALHFHDTRGTA-LANMVTALQMGI 227 (307)
T ss_dssp HHHHHHHHHHHHHTCSCEEEECSSC---CCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCC---CcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchH-HHHHHHHHHhCC
Confidence 7799999999999999999875432 22232 356788888888 57876653 322 444556666665
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=88.27 E-value=1.5 Score=39.43 Aligned_cols=104 Identities=10% Similarity=0.114 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHH
Q psy4398 110 TADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIAL 188 (306)
Q Consensus 110 g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~ 188 (306)
..+++++.+.++.. .||..+-+.+|.+ +++.-.+.++++|+.+ +..+.+-...+|+.+++.++
T Consensus 113 ~~~~~~~~~~a~~~-~G~~~~KiKvG~~---------------~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~ 176 (322)
T 1r6w_A 113 NGDPDDLILKLADM-PGEKVAKVRVGLY---------------EAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQF 176 (322)
T ss_dssp CSCHHHHHHHHHTC-CSSEEEEEECSSS---------------CHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHH
T ss_pred CCCHHHHHHHHHHh-CCCceEEEEeCCC---------------CHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHH
Confidence 45777766555443 5999999876531 3455567788888876 23344444446888999999
Q ss_pred HHHHHHc---CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC
Q psy4398 189 CKRLEAC---GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239 (306)
Q Consensus 189 a~~l~~~---G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s 239 (306)
++.+++. ++.+|- ++.. +++..+++++.+++||.+-=.+.+
T Consensus 177 ~~~l~~~~~~~i~~iE-------qP~~---~~~~~~~l~~~~~ipIa~dE~~~~ 220 (322)
T 1r6w_A 177 AKYVNPDYRDRIAFLE-------EPCK---TRDDSRAFARETGIAIAWDESLRE 220 (322)
T ss_dssp HHTSCTTTGGGEEEEE-------CCBS---SHHHHHHHHHHHCCCEEESGGGGS
T ss_pred HHHhhhhccCCeeEEE-------CCCC---ChHHHHHHHHhCCCCEEeCCCCCC
Confidence 9999887 655542 2221 356778888888899876555444
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=88.25 E-value=9.7 Score=33.04 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHH---HHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHH
Q psy4398 110 TADPERALEAAK---KVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADT 185 (306)
Q Consensus 110 g~~~~~~~~aa~---~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~ 185 (306)
.++.+++....+ .++ .|+|+|-+-+-.|.. . =|.+...+++++.. +.|+..=... ....+.
T Consensus 66 ~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg---------~--iD~~~~~~Li~~a~---~~~vTFHRAf-D~~~d~ 130 (256)
T 1twd_A 66 CYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDG---------N--VDMPRMEKIMAAAG---PLAVTFHRAF-DMCANP 130 (256)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS---------S--BCHHHHHHHHHHHT---TSEEEECGGG-GGCSCH
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC---------C--cCHHHHHHHHHHhC---CCcEEEECch-hccCCH
Confidence 466777666544 344 399999986655442 1 26777788886654 3454443221 112345
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 186 IALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+..+.|.+.|++.|.-+|... .-...++.++++.+.. ++-|++.|||+ .+++.++++.++
T Consensus 131 ~~ale~L~~lG~~rILTSG~~~----~a~~g~~~L~~Lv~~a~~i~Im~GgGv~-~~Ni~~l~~tGv 192 (256)
T 1twd_A 131 LYTLNNLAELGIARVLTSGQKS----DALQGLSKIMELIAHRDAPIIMAGAGVR-AENLHHFLDAGV 192 (256)
T ss_dssp HHHHHHHHHHTCCEEEECTTSS----STTTTHHHHHHHHTSSSCCEEEEESSCC-TTTHHHHHHHTC
T ss_pred HHHHHHHHHcCCCEEECCCCCC----CHHHHHHHHHHHHHhhCCcEEEecCCcC-HHHHHHHHHcCC
Confidence 5667778888999998665421 1234677888776644 68889999987 456666664444
|
| >1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A | Back alignment and structure |
|---|
Probab=88.23 E-value=1.9 Score=40.16 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=64.5
Q ss_pred HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEec--------CCCHHHHHHHHHH
Q psy4398 51 LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIG--------TADPERALEAAKK 122 (306)
Q Consensus 51 ~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~--------g~~~~~~~~aa~~ 122 (306)
.+.|++++.-|++..-.-...... ...+.+.|+++++. |.++ .+++..
T Consensus 149 ~~~GvDlll~ETi~~~~Eakaa~~---------------------a~~~~~lPv~iS~T~~~~G~l~G~~~---~~~~~~ 204 (406)
T 1lt8_A 149 MKKNVDFLIAEYFEHVEEAVWAVE---------------------TLIASGKPVAATMAIGPEGDLHGVPP---GEAAVR 204 (406)
T ss_dssp HHHTCSEEEECCCSCHHHHHHHHH---------------------HHGGGTSCEEEEECCBTTBCTTCCCH---HHHHHH
T ss_pred hhCCCCEEEEcccCCHHHHHHHHH---------------------HHHHhCCcEEEEEEECCCCCcCCCcH---HHHHHH
Confidence 368999999998874321111000 00012346666653 4444 444454
Q ss_pred Hhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-----cccEEEEeccCC--C-------------
Q psy4398 123 VEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-----SIPVSCKIRVFH--N------------- 181 (306)
Q Consensus 123 ~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-----~~pv~vKir~g~--~------------- 181 (306)
+.. ++++|-+||++ .|+.+..+++.+++.. +.|++|.-..+. +
T Consensus 205 l~~~~~~avGvNC~~----------------gP~~~~~~l~~l~~~~~~~g~~~pl~vyPNag~~~~~~~~~~~~~~~~~ 268 (406)
T 1lt8_A 205 LVKAGASIIGVNCHF----------------DPTISLKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFP 268 (406)
T ss_dssp HHTTTCSEEEEESSS----------------CHHHHHHHHHHHHHHHHTTTCCCEEEEECCSBCCTTCCTTCGGGSTTTT
T ss_pred hhcCCCCEEEecCCC----------------CHHHHHHHHHHHHHhhhhcCCCccEEEecCCCCCCcCCcccccCCcccc
Confidence 543 89999999864 2556666777776543 678888765421 0
Q ss_pred ----hH-----HHHHHHHHHHHcCCcEEE
Q psy4398 182 ----EA-----DTIALCKRLEACGIIAIG 201 (306)
Q Consensus 182 ----~~-----~~~~~a~~l~~~G~d~i~ 201 (306)
++ +..++++.+.+.|+..|-
T Consensus 269 ~~~~p~~~~~~~~~~~a~~w~~~Ga~iIG 297 (406)
T 1lt8_A 269 FGLEPRVATRWDIQKYAREAYNLGVRYIG 297 (406)
T ss_dssp TSCGGGBCCHHHHHHHHHHHHHHTEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 01 356677777777876653
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=88.18 E-value=1.4 Score=39.19 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=71.6
Q ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 96 TCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 96 ~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
.+.+.|.|++-.++-.. +...+++ .+|.+.| |+..+.+.+++. ++. ..++||.+|
T Consensus 83 ~~~e~Glp~~tev~d~~--~v~~l~~----~vd~lkI--------------gA~~~~n~~LLr----~~a-~~gkPVilK 137 (288)
T 3tml_A 83 VKRQLGLPVLTDVHSID--EIEQVAS----VVDVLQT--------------PAFLCRQTDFIH----ACA-RSGKPVNIK 137 (288)
T ss_dssp HHHHHCCCEEEECCSGG--GHHHHHH----HCSEEEE--------------CGGGTTCHHHHH----HHH-TSSSCEEEE
T ss_pred HHHhcCCeEEEEeCCHH--HHHHHHH----hCCEEEE--------------CcccccCHHHHH----HHH-ccCCcEEEe
Confidence 33445667776664322 2222222 2577766 455566777544 443 579999999
Q ss_pred eccCCChHHHHHHHHHHHHcCC------cEEE-EcccCCCCCCCC-CCcHHHHHHHHhhCCCcEEE
Q psy4398 176 IRVFHNEADTIALCKRLEACGI------IAIG-VHGRTKAERPRH-RNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~------d~i~-v~~~~~~~~~~~-p~~~~~v~~i~~~~~ipvia 233 (306)
-....+.+++...++.+.+.|. +-|. +|..+.- .+.. ..++..+..+++ +++||+.
T Consensus 138 ~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~y-~~~~~~vdl~~i~~lk~-~~~pV~~ 201 (288)
T 3tml_A 138 KGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSF-GYNNLVSDMRSLAIMRE-TNAPVVF 201 (288)
T ss_dssp CCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCEEC-SSSCEECCHHHHHHGGG-GSSCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCCCC-CCCcCcCCHHHHHHHHh-cCCcEEE
Confidence 9976677888888999988886 5454 5554422 2322 147889999988 8999987
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=88.15 E-value=2.6 Score=38.06 Aligned_cols=141 Identities=10% Similarity=0.012 Sum_probs=83.2
Q ss_pred EEecC-CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--CCC
Q psy4398 106 LQIGT-ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--FHN 181 (306)
Q Consensus 106 vql~g-~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g~~ 181 (306)
++.+. .+.+++..+.+.+.. |.+.|.+-++... .......+.+..+..+.+.++++..++. +..+.+-+-. -.+
T Consensus 72 i~~l~r~~~~~i~~a~~al~~ag~~~v~i~~s~Sd-~~~~~~l~~s~~e~l~~~~~~v~~a~~~-g~~v~f~~~d~~~~~ 149 (325)
T 3eeg_A 72 ICALTRAKEADINIAGEALRFAKRSRIHTGIGSSD-IHIEHKLRSTRENILEMAVAAVKQAKKV-VHEVEFFCEDAGRAD 149 (325)
T ss_dssp EEEECCSCHHHHHHHHHHHTTCSSEEEEEEEECSH-HHHC----CCCTTGGGTTHHHHHHHHTT-SSEEEEEEETGGGSC
T ss_pred EEEeecCCHHHHHHHHHhhcccCCCEEEEEecccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCEEEEEccccccch
Confidence 44333 456677666665554 8888877555321 2223344556666677788888887765 4444333221 146
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC-cHHHHHHHHhhCC----CcEEEecCCC---CHHHHHHHHHhhh
Q psy4398 182 EADTIALCKRLEACGIIAIGVHGRTKAERPRHRN-RIEMIRTLTQHLK----IPVIANGGSK---EIVDYGGVFSLNC 251 (306)
Q Consensus 182 ~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~-~~~~v~~i~~~~~----ipvia~GGI~---s~~~~~~~l~~~v 251 (306)
++...++++.+.++|++.|.+-+.... ..|. -.++++.+++.++ +||-.-.==+ -......++++|+
T Consensus 150 ~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa 224 (325)
T 3eeg_A 150 QAFLARMVEAVIEAGADVVNIPDTTGY---MLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGA 224 (325)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCBSSSC---CCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCEEEecCccCC---cCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 677899999999999999988654322 1232 3467788888885 6765543210 1444555556655
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=88.15 E-value=1.2 Score=39.61 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC--------ChHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH--------NEADTIA 187 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~--------~~~~~~~ 187 (306)
...+-+.++.|+|.|.+ +.+.+........+.+..+..+.+.+.++.+++. +..+.+-+.... +.+...+
T Consensus 83 ~~~i~~a~~ag~~~v~i-~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~-G~~v~~~l~~~~~~~~~~~~~~~~~~~ 160 (298)
T 2cw6_A 83 LKGFEAAVAAGAKEVVI-FGAASELFTKKNINCSIEESFQRFDAILKAAQSA-NISVRGYVSCALGCPYEGKISPAKVAE 160 (298)
T ss_dssp HHHHHHHHHTTCSEEEE-EEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHT-TCEEEEEEETTTCBTTTBSCCHHHHHH
T ss_pred HHhHHHHHHCCCCEEEE-EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEEEeeCCcCCCCCHHHHHH
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcE
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPV 231 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipv 231 (306)
+++.+.+.|++.|.+.+......+.. ..++++.+++.+ ++|+
T Consensus 161 ~~~~~~~~Ga~~i~l~DT~G~~~P~~--~~~lv~~l~~~~~~~~i 203 (298)
T 2cw6_A 161 VTKKFYSMGCYEISLGDTIGVGTPGI--MKDMLSAVMQEVPLAAL 203 (298)
T ss_dssp HHHHHHHTTCSEEEEEETTSCCCHHH--HHHHHHHHHHHSCGGGE
T ss_pred HHHHHHHcCCCEEEecCCCCCcCHHH--HHHHHHHHHHhCCCCeE
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=88.13 E-value=1.2 Score=39.33 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCcEEEEccc-----CCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 185 TIALCKRLEACGIIAIGVHGR-----TKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~-----~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
..+.|+.+|++|+.+|.+--+ ...++-..-.+.+.+++|++++++||++-=-|....+++.+.+.|+
T Consensus 20 ~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aVsIPVm~k~righ~~EAqilea~Ga 91 (291)
T 3o07_A 20 TPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVRIGHFVEAQIIEALEV 91 (291)
T ss_dssp SHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHcCC
Confidence 468899999999999987422 2333333345779999999999999999988888888887777665
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.99 E-value=3.5 Score=38.73 Aligned_cols=90 Identities=13% Similarity=0.013 Sum_probs=61.8
Q ss_pred CChHHHHHHHHHHHhc---cc--ccEEEEe-----------c---cCCChHHHHHHHHH-HHHcCCcEEEEcccCCCCCC
Q psy4398 152 STPDIACNILTTLISN---LS--IPVSCKI-----------R---VFHNEADTIALCKR-LEACGIIAIGVHGRTKAERP 211 (306)
Q Consensus 152 ~~~~~~~eiv~~v~~~---~~--~pv~vKi-----------r---~g~~~~~~~~~a~~-l~~~G~d~i~v~~~~~~~~~ 211 (306)
++.+.+.-++++++++ ++ +.+.+-. . .+|+.++++++++. +++.++..|- ++.
T Consensus 216 ~~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~IE-------dPl 288 (428)
T 3tqp_A 216 NNEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISIE-------DGL 288 (428)
T ss_dssp SHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEEE-------CCS
T ss_pred cHHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceEe-------CCC
Confidence 3445556668999988 63 4444443 1 24788889999997 8888865542 222
Q ss_pred CCCCcHHHHHHHHhhCCCcEEEecC---CCCHHHHHHHHHh
Q psy4398 212 RHRNRIEMIRTLTQHLKIPVIANGG---SKEIVDYGGVFSL 249 (306)
Q Consensus 212 ~~p~~~~~v~~i~~~~~ipvia~GG---I~s~~~~~~~l~~ 249 (306)
.+.+|+..+++++.++.||-.+|. ++++++++++++.
T Consensus 289 -~~dD~eg~~~L~~~~~~pI~ivGDel~vt~~~~~~~~i~~ 328 (428)
T 3tqp_A 289 -SENDWAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKK 328 (428)
T ss_dssp -CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHT
T ss_pred -CcccHHHHHHHHHhcCCCcceeccccccCCHHHHHHHHHh
Confidence 245899999999998766644555 4589999988875
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=87.99 E-value=2.2 Score=38.11 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=55.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-CCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----hh-
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRH-RNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----NC- 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~v- 251 (306)
.|.+...++++.+.+.|+++|.+.|.+.+..... ....++++.+.+.+ ++|||+.-|-.+.+++.+..+. |+
T Consensus 33 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 112 (304)
T 3l21_A 33 LDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAH 112 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 5778899999999999999999988776543322 12345666666665 6899987665666665554443 32
Q ss_pred --hhccccCCCC
Q psy4398 252 --AFLRNHYPVE 261 (306)
Q Consensus 252 --~vGrall~~p 261 (306)
++-...|..|
T Consensus 113 avlv~~P~y~~~ 124 (304)
T 3l21_A 113 GLLVVTPYYSKP 124 (304)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 5555555544
|
| >3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A | Back alignment and structure |
|---|
Probab=87.88 E-value=0.48 Score=42.08 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC--cHHHHHHHHhhC-CCcEEEe-cC-CCCHHHHHHHHHh---h--
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN--RIEMIRTLTQHL-KIPVIAN-GG-SKEIVDYGGVFSL---N-- 250 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~--~~~~v~~i~~~~-~ipvia~-GG-I~s~~~~~~~l~~---~-- 250 (306)
++++..+-|..+.++|+..+|+|.|..+++.+..+ .-+.+..|+++. ++.|-.+ || ..+.++--..++. .
T Consensus 32 TpeEia~~A~~~~~AGAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTgg~~~~~eeR~~~~~~~Pe~aS 111 (284)
T 3chv_A 32 TVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGMIVQFSTGGRSGAGQARGGMLPLKPDMAS 111 (284)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCTTTCCGGGGGTTGGGCCSEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHHHHhhhcCCCEEE
Confidence 56788888999999999999999998876554322 235667888876 6655444 33 2333322122211 1
Q ss_pred hhhccccCC-----CCCchHHHHHHHHHhcCCC--CCcce
Q psy4398 251 CAFLRNHYP-----VEKLPKTILYAHCKYKRFE--VPKYE 283 (306)
Q Consensus 251 v~vGrall~-----~p~~~~~~l~~~~~~~g~~--~~~~~ 283 (306)
+-+|+-.+. |+.-.-.++-++|.++|+. +-||.
T Consensus 112 l~~Gs~Nf~~~v~~n~~~~~~~~~~~~~e~Gv~pE~e~fd 151 (284)
T 3chv_A 112 LSVGSNNFPSRVYENPPDLVDWLAAQMRSYRVTPEIEAFD 151 (284)
T ss_dssp ECCSCEECSSSEECCCHHHHHHHHHHHHHHTCEEEEEESS
T ss_pred ecCcccccCCccccCCHHHHHHHHHHHHHcCCEEEEEEEC
Confidence 144444333 3211123788889999987 44443
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=87.85 E-value=6.7 Score=37.17 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=61.1
Q ss_pred CCCceEEEec-----CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE
Q psy4398 100 EKNKIILQIG-----TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS 173 (306)
Q Consensus 100 ~~~p~ivql~-----g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~ 173 (306)
.|..+.+.++ -.+++.+.+.++.+.+ |+|.|-|- |-.|. -.|..+.++++++++.+++||.
T Consensus 139 ~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~----------DT~G~---~~P~~v~~lv~~l~~~~~~~i~ 205 (464)
T 2nx9_A 139 MGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALK----------DMAGI---LTPYAAEELVSTLKKQVDVELH 205 (464)
T ss_dssp TTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEE----------ETTSC---CCHHHHHHHHHHHHHHCCSCEE
T ss_pred CCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEc----------CCCCC---cCHHHHHHHHHHHHHhcCCeEE
Confidence 4555544452 2378889999987765 99987772 33443 3699999999999998877766
Q ss_pred EEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 174 CKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 174 vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
+=.- .+..-...-+-++.++||+.|..+
T Consensus 206 ~H~H--nd~GlAvAN~laAv~AGa~~VD~t 233 (464)
T 2nx9_A 206 LHCH--STAGLADMTLLKAIEAGVDRVDTA 233 (464)
T ss_dssp EEEC--CTTSCHHHHHHHHHHTTCSEEEEB
T ss_pred EEEC--CCCChHHHHHHHHHHhCCCEEEEe
Confidence 6655 333334444445567999999865
|
| >3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=87.81 E-value=0.66 Score=41.73 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCC-CCCCCCCC--cHHHHHHHHhhCCCcEE-EecCC
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTK-AERPRHRN--RIEMIRTLTQHLKIPVI-ANGGS 237 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~-~~~~~~p~--~~~~v~~i~~~~~ipvi-a~GGI 237 (306)
++++..+-|..+.++||..+|+|.|.. ++..+..+ .-+.+..|++++++.|. .+||.
T Consensus 30 TpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~ 90 (311)
T 3e49_A 30 TPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDAVINLTTGGS 90 (311)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCCEEEECSCSC
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 567888889999999999999999984 56554322 22567888888866443 33543
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=87.63 E-value=3.1 Score=35.75 Aligned_cols=95 Identities=19% Similarity=0.162 Sum_probs=60.1
Q ss_pred CCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC---CcHH--
Q psy4398 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR---NRIE-- 218 (306)
Q Consensus 144 ~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p---~~~~-- 218 (306)
...|-.+..+.+.+.++++.+++. ++.|++-+- ++. +-.+...+.|+|.|-+|-..-...+... ..++
T Consensus 103 TegGldv~~~~~~l~~~i~~L~~~-GIrVSLFID--pd~----~qi~aA~~~GA~~IELhTG~Ya~a~~~~~~~~el~~i 175 (243)
T 1m5w_A 103 TEGGLDVAGQRDKMRDACKRLADA-GIQVSLFID--ADE----EQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARI 175 (243)
T ss_dssp CCSCCCSGGGHHHHHHHHHHHHHT-TCEEEEEEC--SCH----HHHHHHHHTTCSEEEEECHHHHHCCSHHHHHHHHHHH
T ss_pred CCcchhHHhhHHHHHHHHHHHHHC-CCEEEEEeC--CCH----HHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHH
Confidence 445667778899999999999774 888888877 553 4455667899999999754321111100 0112
Q ss_pred -HHHHHHhhCCCcEEEecCCCCHHHHHHH
Q psy4398 219 -MIRTLTQHLKIPVIANGGSKEIVDYGGV 246 (306)
Q Consensus 219 -~v~~i~~~~~ipvia~GGI~s~~~~~~~ 246 (306)
...+.....++-|=+.-|++ .++...+
T Consensus 176 ~~aa~~A~~lGL~VnAGHgL~-y~Nv~~i 203 (243)
T 1m5w_A 176 AKAATFAASLGLKVNAGHGLT-YHNVKAI 203 (243)
T ss_dssp HHHHHHHHHTTCEEEEESSCC-TTTHHHH
T ss_pred HHHHHHHHHcCCEEecCCCCC-HHHHHHH
Confidence 22334445588888888865 4444444
|
| >2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1} | Back alignment and structure |
|---|
Probab=87.61 E-value=1.6 Score=37.35 Aligned_cols=86 Identities=10% Similarity=0.036 Sum_probs=58.0
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEecc---
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRV--- 178 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~--- 178 (306)
.+++-|.+.+.++..+.++.+..++|.||+ |-|.+... +.+.+.+.++ ..+. .|+.+=+|.
T Consensus 5 ~Icvpi~~~t~~e~~~~~~~~~~~~D~vEl---------RvD~l~~~---~~~~v~~~l~---~~~~~~PiI~T~R~~~e 69 (231)
T 2ocz_A 5 RIVAPVMPRHFDEAQAIDISKYEDVNLIEW---------RADFLPKD---EIVAVAPAIF---EKFAGKEIIFTLRTVQE 69 (231)
T ss_dssp EEEEEECCSSHHHHHTCCGGGGTTCSEEEE---------EGGGSCGG---GHHHHHHHHH---HHTTTSEEEEECCBGGG
T ss_pred EEEEEeCCCCHHHHHHHHHHhccCCCEEEE---------Eecccccc---CHHHHHHHHH---HHcCCCcEEEEEeeccc
Confidence 578889899988877666666669999999 44433211 1334444443 3233 899988885
Q ss_pred C----CChHHHHHHHHHHHHcC-CcEEEEc
Q psy4398 179 F----HNEADTIALCKRLEACG-IIAIGVH 203 (306)
Q Consensus 179 g----~~~~~~~~~a~~l~~~G-~d~i~v~ 203 (306)
| .+.++..++.+.+.+.| +|+|.|.
T Consensus 70 GG~~~~~~~~~~~ll~~~~~~g~~d~iDvE 99 (231)
T 2ocz_A 70 GGNITLSSQEYVDIIKEINAIYNPDYIDFE 99 (231)
T ss_dssp TCSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 2 23456778888888888 9999984
|
| >2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A | Back alignment and structure |
|---|
Probab=87.56 E-value=0.68 Score=41.09 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=61.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC--cHHHHHHHHhhC-CCcEEEecCCC---CHHHHHHHHHh---h
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN--RIEMIRTLTQHL-KIPVIANGGSK---EIVDYGGVFSL---N 250 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~--~~~~v~~i~~~~-~ipvia~GGI~---s~~~~~~~l~~---~ 250 (306)
.++++..+-|..+.++||..+|+|.|..+++.+..+ .-+.+..|+++. ++.|-.+.|.. +.++--..++. .
T Consensus 31 vTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~~~~Pe~ 110 (282)
T 2y7e_A 31 ITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPLALKPEM 110 (282)
T ss_dssp CSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGGGGCCSE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHhhcCCCE
Confidence 356788899999999999999999998655554322 235667888875 66665554433 34432222221 1
Q ss_pred --hhhccccCC-----CCCchHHHHHHHHHhcCCC
Q psy4398 251 --CAFLRNHYP-----VEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 251 --v~vGrall~-----~p~~~~~~l~~~~~~~g~~ 278 (306)
+.+|+-.+. |+.-.-.++-.+|.++|+.
T Consensus 111 asl~~gs~Nf~~~v~~n~~~~~~~~~~~~~e~Gv~ 145 (282)
T 2y7e_A 111 ATLNAGTLNFGDDIFINHPADIIRLAEAFKQYNVV 145 (282)
T ss_dssp EEEECCCEEETTEEECCCHHHHHHHHHHHHHTTCE
T ss_pred EEecccccccccccccCCHHHHHHHHHHHHHcCCe
Confidence 144554333 3311223788899999987
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=87.49 E-value=1.8 Score=38.57 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=43.2
Q ss_pred HHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHH
Q psy4398 113 PERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKR 191 (306)
Q Consensus 113 ~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~ 191 (306)
.+...+.|+ .+++|+|.|+|+.-+..+... .-+..+..+.+..+++++++. ++||++-..- .+.+++
T Consensus 45 ~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~----~v~~~eE~~Rv~pvi~~l~~~-~vpiSIDT~~-------~~Va~a 112 (294)
T 2y5s_A 45 RDDALRRAERMIAEGADLLDIGGESTRPGAP----PVPLDEELARVIPLVEALRPL-NVPLSIDTYK-------PAVMRA 112 (294)
T ss_dssp TTHHHHHHHHHHHTTCSEEEEESSCCSTTCC----CCCHHHHHHHHHHHHHHHGGG-CSCEEEECCC-------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCcCCCCCC----CCCHHHHHHHHHHHHHHHhhC-CCeEEEECCC-------HHHHHH
Confidence 344444444 456799999999855222100 011123345566777777765 8898886551 234444
Q ss_pred HHHcCCcEEE
Q psy4398 192 LEACGIIAIG 201 (306)
Q Consensus 192 l~~~G~d~i~ 201 (306)
..++|++.|.
T Consensus 113 Al~aGa~iIN 122 (294)
T 2y5s_A 113 ALAAGADLIN 122 (294)
T ss_dssp HHHHTCSEEE
T ss_pred HHHcCCCEEE
Confidence 4445666654
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=87.29 E-value=1.9 Score=37.63 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCCCceEEEecC--------CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc
Q psy4398 99 REKNKIILQIGT--------ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS 169 (306)
Q Consensus 99 ~~~~p~ivql~g--------~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~ 169 (306)
+.+.|+|+...- .+++...++++.+.+ |+|.|-... | | +++. ++.+++.++
T Consensus 136 ~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~~--~---------~-----~~e~----~~~~~~~~~ 195 (263)
T 1w8s_A 136 KFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKY--T---------G-----DPKT----FSWAVKVAG 195 (263)
T ss_dssp HHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEEC--C---------S-----SHHH----HHHHHHHTT
T ss_pred HcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEcC--C---------C-----CHHH----HHHHHHhCC
Confidence 346777776421 156777777777765 999988863 2 1 3344 344444444
Q ss_pred c-cEEEEeccCC---ChHHHHHHHHHHHHcCCcEEEE
Q psy4398 170 I-PVSCKIRVFH---NEADTIALCKRLEACGIIAIGV 202 (306)
Q Consensus 170 ~-pv~vKir~g~---~~~~~~~~a~~l~~~G~d~i~v 202 (306)
. | ||...|. +.++..+.++.+.++|++++.+
T Consensus 196 ~~p--V~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsv 230 (263)
T 1w8s_A 196 KVP--VLMSGGPKTKTEEDFLKQVEGVLEAGALGIAV 230 (263)
T ss_dssp TSC--EEEECCSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCe--EEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 4 5 7777775 4567888888888899998875
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=87.23 E-value=2.1 Score=37.88 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----hh-
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----NC- 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~v- 251 (306)
.|.+...++++.+.+.|+++|.+.|.+.+...... ...++++.+.+.+ ++|||+.-|-.+.+++.+..+. |+
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 97 (289)
T 2yxg_A 18 VDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGAD 97 (289)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 67788999999999999999999887765443221 2345666666665 5899877665565555444332 32
Q ss_pred --hhccccCCCC
Q psy4398 252 --AFLRNHYPVE 261 (306)
Q Consensus 252 --~vGrall~~p 261 (306)
++-.+.|..|
T Consensus 98 avlv~~P~y~~~ 109 (289)
T 2yxg_A 98 AVLSITPYYNKP 109 (289)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 5555555444
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=2.6 Score=37.48 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=53.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----hh-
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----NC- 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~v- 251 (306)
.|.+...++++.+.+.|+++|.+.|.+.+...... ...++++.+.+.+ ++|||+.-|-.+.+++.+..+. |+
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 109 (301)
T 1xky_A 30 IDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD 109 (301)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 56777899999999999999999887765443221 1345666666665 6898877665565555444432 32
Q ss_pred --hhccccCCCC
Q psy4398 252 --AFLRNHYPVE 261 (306)
Q Consensus 252 --~vGrall~~p 261 (306)
++-...|..|
T Consensus 110 avlv~~P~y~~~ 121 (301)
T 1xky_A 110 AVMLVAPYYNKP 121 (301)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEcCCCCCCC
Confidence 5555555444
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=87.17 E-value=3.7 Score=36.53 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----hh-
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----NC- 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~v- 251 (306)
.|.+...++++.+.+.|+|+|.+.|.+.+...... ...++++.+.+.+ ++|||+.-|-.+.+++.+..+. |+
T Consensus 34 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gad 113 (304)
T 3cpr_A 34 IDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGAD 113 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCC
Confidence 57778999999999999999999888766544322 2345666666665 5899877665665555444432 32
Q ss_pred --hhccccCCCC
Q psy4398 252 --AFLRNHYPVE 261 (306)
Q Consensus 252 --~vGrall~~p 261 (306)
++-.+.|..|
T Consensus 114 avlv~~P~y~~~ 125 (304)
T 3cpr_A 114 GLLVVTPYYSKP 125 (304)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 5555555444
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=87.07 E-value=1.7 Score=38.19 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=55.4
Q ss_pred HHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC---------CChHH
Q psy4398 115 RALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF---------HNEAD 184 (306)
Q Consensus 115 ~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g---------~~~~~ 184 (306)
.|.++.+.+++ ||+.|||+-|+ +.-..+.-.++|+.+++. +.|+--.| .++..
T Consensus 111 ~~~~yl~~~k~lGF~~IEISdGt-------------i~l~~~~~~~lI~~a~~~----f~Vl~EvG~K~~~~~~~~~~~~ 173 (276)
T 1u83_A 111 KVNEFHRYCTYFGCEYIEISNGT-------------LPMTNKEKAAYIADFSDE----FLVLSEVGSKDAELASRQSSEE 173 (276)
T ss_dssp CHHHHHHHHHHTTCSEEEECCSS-------------SCCCHHHHHHHHHHHTTT----SEEEEECSCCC------CCSTH
T ss_pred cHHHHHHHHHHcCCCEEEECCCc-------------ccCCHHHHHHHHHHHHhh----cEEeeeccccCccccCCCCHHH
Confidence 45666677765 99999998554 222345556666666544 33333322 24567
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCC--CCCC--CCCcHHHH-HHHHhhCC
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKA--ERPR--HRNRIEMI-RTLTQHLK 228 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~--~~~~--~p~~~~~v-~~i~~~~~ 228 (306)
.++.++...++||+.|.+-+|... +-+. +....+.+ .+|.+.++
T Consensus 174 ~I~~~~~dLeAGA~~ViiEaRESG~~Gi~~~~g~~r~d~v~~~i~~~l~ 222 (276)
T 1u83_A 174 WLEYIVEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDID 222 (276)
T ss_dssp HHHHHHHHHHHTEEEEEEC------------------CCHHHHHTTTSC
T ss_pred HHHHHHHHHHCCCcEEEEeeeccCCCCccCCCCCCcHHHHHHHHHhhCC
Confidence 899999999999999999887632 2222 22334556 66666653
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=86.98 E-value=2.7 Score=37.50 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----hh-
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----NC- 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~v- 251 (306)
.|.+...++++.+.+.|+++|.+.|.+.+...... ...++++.+.+.+ ++|||+.-|-.+.+++.+..+. |+
T Consensus 29 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 108 (303)
T 2wkj_A 29 LDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFD 108 (303)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCC
Confidence 56777899999999999999999887765443221 2345666666665 6899876555555555444332 32
Q ss_pred --hhccccCCCC
Q psy4398 252 --AFLRNHYPVE 261 (306)
Q Consensus 252 --~vGrall~~p 261 (306)
++-...|..|
T Consensus 109 avlv~~P~y~~~ 120 (303)
T 2wkj_A 109 AVSAVTPFYYPF 120 (303)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEecCCCCCCC
Confidence 5555555544
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=86.95 E-value=1.3 Score=40.24 Aligned_cols=106 Identities=10% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-------ChHHHHHHHHH
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH-------NEADTIALCKR 191 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~-------~~~~~~~~a~~ 191 (306)
.+++.+ |.|.|.+ +.+-+....+...+.+..+..+.+.++++.+++. +..+.+-+. . +.+...++++.
T Consensus 102 i~~a~~~g~~~v~i-~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~-G~~v~~~~~--~~~~~~~~~~~~~~~~~~~ 177 (337)
T 3ble_A 102 VDWIKDSGAKVLNL-LTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKS-GLKINVYLE--DWSNGFRNSPDYVKSLVEH 177 (337)
T ss_dssp HHHHHHHTCCEEEE-EEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHT-TCEEEEEEE--THHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEE-EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEE--ECCCCCcCCHHHHHHHHHH
Q ss_pred HHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcE
Q psy4398 192 LEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPV 231 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipv 231 (306)
+.++|++.|.+-+......+.. -.++++.+++.+ ++||
T Consensus 178 ~~~~Ga~~i~l~DT~G~~~P~~--v~~lv~~l~~~~p~~~i 216 (337)
T 3ble_A 178 LSKEHIERIFLPDTLGVLSPEE--TFQGVDSLIQKYPDIHF 216 (337)
T ss_dssp HHTSCCSEEEEECTTCCCCHHH--HHHHHHHHHHHCTTSCE
T ss_pred HHHcCCCEEEEecCCCCcCHHH--HHHHHHHHHHhcCCCeE
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.84 E-value=2.9 Score=37.10 Aligned_cols=81 Identities=12% Similarity=0.053 Sum_probs=54.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----h--
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----N-- 250 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~-- 250 (306)
.|.+...++++.+.+.|+++|.+.|.+.+...... ...++++.+.+.+ ++|||+.-|-.+.+++.+..+. |
T Consensus 21 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad 100 (294)
T 3b4u_A 21 VDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGAR 100 (294)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCC
Confidence 56777899999999999999999887765443221 2346677777776 5898876555565555444432 3
Q ss_pred -hhhccccCCC
Q psy4398 251 -CAFLRNHYPV 260 (306)
Q Consensus 251 -v~vGrall~~ 260 (306)
+++-...|..
T Consensus 101 avlv~~P~y~~ 111 (294)
T 3b4u_A 101 NILLAPPSYFK 111 (294)
T ss_dssp EEEECCCCSSC
T ss_pred EEEEcCCcCCC
Confidence 2555555544
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=86.71 E-value=2.6 Score=37.27 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~ 248 (306)
.|.+...++++.+.+.|+++|.+.|.+.+...... ...++++.+.+.+ ++|||+.-|-.+.+++.+..+
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~ 90 (292)
T 2ojp_A 19 VCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQ 90 (292)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHH
Confidence 56777899999999999999999887765443221 2345666666665 589987766566665555444
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.70 E-value=2.1 Score=37.97 Aligned_cols=82 Identities=17% Similarity=0.058 Sum_probs=54.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----hh-
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----NC- 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~v- 251 (306)
.|.+...++++.+.+.|+++|.+.|.+.+...... ...++++.+.+.+ ++|||+.-|-.+.+++.+..+. |+
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad 97 (294)
T 2ehh_A 18 VDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGAD 97 (294)
T ss_dssp ECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 67788999999999999999999887765443221 2345666666665 5899877665565555444432 32
Q ss_pred --hhccccCCCC
Q psy4398 252 --AFLRNHYPVE 261 (306)
Q Consensus 252 --~vGrall~~p 261 (306)
++-...|..|
T Consensus 98 avlv~~P~y~~~ 109 (294)
T 2ehh_A 98 GALVVVPYYNKP 109 (294)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 5555555444
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=86.70 E-value=2 Score=38.31 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----hh-
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----NC- 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~v- 251 (306)
.|.+...++++.+.+.|+++|.+.|.+.+...... ...++++.+.+.+ ++|||+.-|-.+.+++.+..+. |+
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gad 109 (306)
T 1o5k_A 30 LDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGAN 109 (306)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCC
Confidence 67788999999999999999999887765433221 2345666666665 5898877665565555444432 32
Q ss_pred --hhccccCCCC
Q psy4398 252 --AFLRNHYPVE 261 (306)
Q Consensus 252 --~vGrall~~p 261 (306)
++-.+.|..|
T Consensus 110 avlv~~P~y~~~ 121 (306)
T 1o5k_A 110 GVLVVTPYYNKP 121 (306)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 4555555444
|
| >3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia fungorum} | Back alignment and structure |
|---|
Probab=86.70 E-value=4.7 Score=37.81 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=67.5
Q ss_pred CCCCceEEEec----CCCHHHHHHHHHHHhc-CCCEE--EEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 99 REKNKIILQIG----TADPERALEAAKKVEH-DVAAI--DINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 99 ~~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~v--eln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
..+.|++..+. |-+++++++++..+.. |.|.| |=|++++.- ..+.++...+.+.+++..+.++..
T Consensus 158 ~~~RPl~gtiiKPklGLs~~~~a~~~ye~~~GGlDfiKDDE~~~~q~f--------~p~~eRv~~v~eai~rA~~eTGe~ 229 (432)
T 3nwr_A 158 VKDRPMIGTIIKPNVGLSAAETAALVRELCEAGVDFIKDDEVCANPAH--------APLAERVRAVMSEVRRYRERSGRP 229 (432)
T ss_dssp CCSSCEEEEECSSSSCCCHHHHHHHHHHHHHHTCSEEECCTTCSSCTT--------SCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCceEEEeeccccCCCHHHHHHHHHHHHhcCCceeECCCCCCCCCc--------ccHHHHHHHHHHHHHHHHHHhCCc
Confidence 36789998875 6789999999887765 88998 335553221 123455667777777777777654
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
...-..+..+.++..+-++.+.+.|++++-+.
T Consensus 230 k~y~~NiT~~~~em~~Ra~~a~e~G~~~~mvd 261 (432)
T 3nwr_A 230 VMVAFNITDDLDAMRRHAELVEREGGSCVMAS 261 (432)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEeecCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 33333332577888888999999999988764
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=86.69 E-value=14 Score=31.35 Aligned_cols=132 Identities=14% Similarity=0.006 Sum_probs=72.8
Q ss_pred CCceEEEec-CCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEE--Ee
Q psy4398 101 KNKIILQIG-TADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC--KI 176 (306)
Q Consensus 101 ~~p~ivql~-g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v--Ki 176 (306)
+.++++-+- +..++.-..+++.+ +.|+|.|.+|..+ + .+.+...++.+++. +.-|++ .+
T Consensus 64 g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~~~-----------G-----~~~l~~~~~~~~~~-g~~v~vLt~~ 126 (228)
T 3m47_A 64 GCRIIADFKVADIPETNEKICRATFKAGADAIIVHGFP-----------G-----ADSVRACLNVAEEM-GREVFLLTEM 126 (228)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTT-----------C-----HHHHHHHHHHHHHH-TCEEEEECCC
T ss_pred CCeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEeccC-----------C-----HHHHHHHHHHHHhc-CCCeEEEEeC
Confidence 446777664 33344444455544 4599999998443 1 23444555555432 223443 33
Q ss_pred cc-CC--C-hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC--CcEEEecCCCCH-HHHHHHHHh
Q psy4398 177 RV-FH--N-EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK--IPVIANGGSKEI-VDYGGVFSL 249 (306)
Q Consensus 177 r~-g~--~-~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~--ipvia~GGI~s~-~~~~~~l~~ 249 (306)
+. +. . .+-..++++...+.|++++++++. ..+.++++++.++ .++ ..+||+.- .+. ++++.
T Consensus 127 s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at----------~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~a 194 (228)
T 3m47_A 127 SHPGAEMFIQGAADEIARMGVDLGVKNYVGPST----------RPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLR 194 (228)
T ss_dssp CSGGGGTTHHHHHHHHHHHHHHTTCCEEECCSS----------CHHHHHHHHHHHCSSSEE-EECC----------CGGG
T ss_pred CCccHHHHHHHHHHHHHHHHHHhCCcEEEECCC----------ChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHc
Confidence 32 11 1 122467888888999999886531 2256678888774 444 67787632 144 56666
Q ss_pred hh---hhccccCCCC
Q psy4398 250 NC---AFLRNHYPVE 261 (306)
Q Consensus 250 ~v---~vGrall~~p 261 (306)
|+ .+||+++..+
T Consensus 195 Gad~iVvGr~I~~a~ 209 (228)
T 3m47_A 195 FADAIIVGRSIYLAD 209 (228)
T ss_dssp TCSEEEECHHHHTSS
T ss_pred CCCEEEECHHHhCCC
Confidence 54 9999998743
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=86.52 E-value=3 Score=37.02 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----hh-
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----NC- 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~v- 251 (306)
.|.+...++++.+.+.|+++|.+.|.+.+...... ...++++.+.+.+ ++|||+.-|-.+.+++.+..+. |+
T Consensus 25 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 104 (297)
T 3flu_A 25 IHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGAD 104 (297)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 56777899999999999999999887765433221 2345666666665 6899887665666665544433 33
Q ss_pred --hhccccCCCC
Q psy4398 252 --AFLRNHYPVE 261 (306)
Q Consensus 252 --~vGrall~~p 261 (306)
++-...|..|
T Consensus 105 avlv~~P~y~~~ 116 (297)
T 3flu_A 105 YTLSVVPYYNKP 116 (297)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 5555555544
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=86.35 E-value=1.9 Score=38.53 Aligned_cols=69 Identities=12% Similarity=0.076 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-CCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRH-RNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~ 248 (306)
.|.+...++++.+.+.|+++|.+.|.+.+..... ....++++.+.+.+ ++|||+.-|-.+.+++.+..+
T Consensus 32 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~ 103 (307)
T 3s5o_A 32 VDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTV 103 (307)
T ss_dssp BCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHH
Confidence 5677789999999999999999988776543322 12346777777776 689887656556555554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 306 | ||||
| d1vhna_ | 305 | c.1.4.1 (A:) Putative flavin oxidoreducatase TM009 | 5e-26 | |
| d1whna_ | 128 | d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, | 3e-06 | |
| d1x47a1 | 85 | d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie | 0.003 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Score = 102 bits (255), Expect = 5e-26
Identities = 55/226 (24%), Positives = 93/226 (41%), Gaps = 21/226 (9%)
Query: 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91
K+ LAPM FR LA ++GAD +SE + + +K +LL
Sbjct: 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL------------ 49
Query: 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALL 151
P E+N + +QI ++P EAA+ + ID+N GCP + + G G ALL
Sbjct: 50 ----PQPHERN-VAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALL 104
Query: 152 STPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP 211
I+ L ++S S K R+ + + + + L G+ + +H RT +
Sbjct: 105 KDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSF 164
Query: 212 RHRNRIEMIRTLTQHLKIPVIANGGS----KEIVDYGGVFSLNCAF 253
R + + L + + V + + K ++ G L A
Sbjct: 165 TGRAEWKALSVLEKRIPTFVSGDIFTPEDAKRALEESGCDGLLVAR 210
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.6 bits (102), Expect = 3e-06
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 245 GVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETV--QYEKLFRSLVTVNGKQY 302
G+ + F R YP + PK L C+ ++ P YETV +++F S+VTV ++Y
Sbjct: 9 GIIKMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKY 68
Query: 303 TS 304
S
Sbjct: 69 QS 70
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.8 bits (77), Expect = 0.003
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 259 PVEKLPKTILYAHCKYKRFEVPKYETVQY---EKLFRSLVTVNGKQYTS 304
P K IL+ + + P Y + + F + VT++G Y S
Sbjct: 6 PNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGS 54
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 306 | |||
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 100.0 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 100.0 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 100.0 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 100.0 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 100.0 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.98 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 99.98 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 99.97 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.97 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.96 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.96 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 99.96 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.96 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.96 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.95 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.93 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 99.38 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 99.2 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.14 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.14 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.12 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.12 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.07 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.02 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 99.02 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.94 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 98.88 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.81 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 98.81 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 98.78 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 98.75 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 98.64 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 98.63 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 98.57 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 98.47 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.41 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 98.41 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 98.38 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 98.11 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 98.08 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 98.08 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 97.95 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 97.95 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 97.92 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 97.92 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 97.9 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 97.85 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 97.79 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 97.76 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.75 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 97.69 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.68 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 97.68 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.67 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 97.63 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 97.58 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 97.56 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 97.52 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 97.46 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 97.45 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.45 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.4 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 97.35 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.31 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 97.16 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 97.11 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 97.09 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 97.04 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.01 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 96.98 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 96.94 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 96.93 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 96.82 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 96.8 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 96.76 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 96.69 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 96.6 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 96.5 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.43 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 96.41 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 96.34 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 96.32 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 96.21 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 96.18 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 96.17 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 96.12 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 96.08 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 95.98 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 95.93 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 95.89 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 95.85 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 95.84 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 95.81 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 95.77 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 95.57 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 95.51 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 95.4 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 95.35 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 95.33 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 95.29 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 95.08 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 95.0 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 94.85 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 94.82 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 94.68 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 94.42 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 94.31 | |
| d1geha1 | 307 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 94.29 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 94.24 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 94.22 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 94.2 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 94.15 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 94.1 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 94.06 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 93.96 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 93.84 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 93.68 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 93.14 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 93.05 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 92.71 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 92.35 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 92.04 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 91.86 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 91.83 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 91.33 | |
| d1dosa_ | 358 | Fructose-bisphosphate aldolase (FBP aldolase) {Esc | 91.33 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 91.28 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 89.87 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 89.58 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 89.26 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 89.0 | |
| d1yx1a1 | 250 | Hypothetical protein PA2260 {Pseudomonas aeruginos | 88.74 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 88.68 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 88.63 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 87.97 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 87.91 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 87.78 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 87.6 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 87.52 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 87.45 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 86.66 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 86.45 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 86.33 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 85.85 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 85.56 | |
| d1r6wa1 | 221 | O-succinylbenzoate synthase {Escherichia coli [Tax | 85.54 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 85.31 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 84.59 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 84.58 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 84.18 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 83.81 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 83.29 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 83.28 | |
| d1bwva1 | 328 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {G | 82.83 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 82.71 | |
| d1wdda1 | 325 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {R | 82.25 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 81.66 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 81.29 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 81.14 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 81.12 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 80.72 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 80.37 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-46 Score=342.98 Aligned_cols=223 Identities=24% Similarity=0.305 Sum_probs=197.1
Q ss_pred ceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCceEEEecCC
Q psy4398 32 KIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTA 111 (306)
Q Consensus 32 ~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~g~ 111 (306)
+|+||||.++||.+||.+++++|++++||||++++.+.+.......++. . ..+.|+++||+|+
T Consensus 2 ki~LAPM~g~td~~fR~l~~~~g~~~~~Temi~~~~~~~~~~~~~~~~~----------------~-~~e~p~~~Ql~g~ 64 (305)
T d1vhna_ 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLP----------------Q-PHERNVAVQIFGS 64 (305)
T ss_dssp EEEECCCTTTCSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHSC----------------C-TTCTTEEEEEECS
T ss_pred eEEEECcCCCccHHHHHHHHHHCcCEEEECCEEechhhhCChhhHhhcc----------------C-CCCCCeEEEEecc
Confidence 6899999999999999999999999999999999887654443222211 1 2456999999999
Q ss_pred CHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHH
Q psy4398 112 DPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKR 191 (306)
Q Consensus 112 ~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~ 191 (306)
+|+.+.++|+.+++|+|+|+||+|||++++.+.++|++|+++|+.+.++++++++.+++||+||+|.|++.++..++++.
T Consensus 65 ~p~~~~~aa~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~ 144 (305)
T d1vhna_ 65 EPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRI 144 (305)
T ss_dssp CHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHH
T ss_pred chhhhhhhhhhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhcccccccccccCcccchhhHHHHH
Confidence 99999999998888999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCCCchHHH
Q psy4398 192 LEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVEKLPKTI 267 (306)
Q Consensus 192 l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p~~~~~~ 267 (306)
++++|++.|+||+|++.+.|.++++|+.++++++ ++|||+||||.|.+|+.+.++. ++|+||+++.||++-. .
T Consensus 145 l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~-~ 221 (305)
T d1vhna_ 145 LVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFK-Q 221 (305)
T ss_dssp HHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHH-H
T ss_pred HHHhCCcEEEechhhhhhccccchhhhHHHhhhh--hhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhh-h
Confidence 9999999999999999999999999999988876 5899999999999999999974 6799999999995433 2
Q ss_pred HHHHHHh
Q psy4398 268 LYAHCKY 274 (306)
Q Consensus 268 l~~~~~~ 274 (306)
+.+++..
T Consensus 222 i~~~l~~ 228 (305)
T d1vhna_ 222 IKDFLRS 228 (305)
T ss_dssp HHHHHHH
T ss_pred hhhhhcC
Confidence 3344443
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.3e-36 Score=280.42 Aligned_cols=248 Identities=12% Similarity=0.086 Sum_probs=199.2
Q ss_pred ccccccccccCCceEEccCCC---------CCCHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCC
Q psy4398 20 ANANQANINYSNKIILAPMVR---------MNTLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPL 88 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~---------~t~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (306)
.|+++++++|||||++|||+. +|+..++.+. +++|+|+++||.+.+.+.........++ .+..++..
T Consensus 6 ~P~~ig~~~lkNRiv~aPm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIite~~~V~~~~~~~~~~~~~-~~d~~i~~- 83 (337)
T d1z41a1 6 TPITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGI-WSDEHIEG- 83 (337)
T ss_dssp SCEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBC-SSTHHHHH-
T ss_pred CCceECCEEECCCEEeCccCCCccCCCCCCCCHHHHHHHHHHHcCCceEEEECcEEEccccccccCcccc-ccHHHHHH-
Confidence 688999999999999999973 2334444443 2579999999998877644332222222 22222221
Q ss_pred CCceeeecCCCCCCceEEEecCCC-----------------------------------HHHHHHHHHHHhc-CCCEEEE
Q psy4398 89 DGSVVFRTCPREKNKIILQIGTAD-----------------------------------PERALEAAKKVEH-DVAAIDI 132 (306)
Q Consensus 89 ~~~~~~~~~~~~~~p~ivql~g~~-----------------------------------~~~~~~aa~~~~~-g~d~vel 132 (306)
++.+.+.+|+.|.++++||++.. .++|+++|+++++ |||+|||
T Consensus 84 -~k~l~~avh~~G~~i~~QL~h~Gr~~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEi 162 (337)
T d1z41a1 84 -FAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEI 162 (337)
T ss_dssp -HHHHHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred -HHHHHHHhhccccccchhhhcCCCcccccCCCCCCcccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCCeEEe
Confidence 56678888889999999997642 2789999999975 9999999
Q ss_pred ccC---------CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------CCChHHHHHHHHHHHHcCC
Q psy4398 133 NMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------FHNEADTIALCKRLEACGI 197 (306)
Q Consensus 133 n~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------g~~~~~~~~~a~~l~~~G~ 197 (306)
|.+ ||..|.|+|+||++++||.+++.||+++||+.++.|+.||++. +.+.++..++++.|+++|+
T Consensus 163 H~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~ 242 (337)
T d1z41a1 163 HAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGV 242 (337)
T ss_dssp EECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTC
T ss_pred eccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCC
Confidence 977 8999999999999999999999999999999999999999996 4577889999999999999
Q ss_pred cEEEEcccCCCC--C-CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCCCchHHHHHH
Q psy4398 198 IAIGVHGRTKAE--R-PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVEKLPKTILYA 270 (306)
Q Consensus 198 d~i~v~~~~~~~--~-~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p~~~~~~l~~ 270 (306)
|.++++...... . ......+++.+.+++.+++||+++|+|+|+++++++++. +|++||++++||+|+++..++
T Consensus 243 d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~~~ 322 (337)
T d1z41a1 243 DLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAKQ 322 (337)
T ss_dssp CEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHH
T ss_pred cccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhCchHHHHHHhh
Confidence 999997654321 1 122246788999999999999999999999999999997 459999999999999875444
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-35 Score=271.66 Aligned_cols=245 Identities=13% Similarity=0.112 Sum_probs=190.7
Q ss_pred ccccccccccCCceEEccCCCCC-------CHHHHHHH--HHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMN-------TLPFRLLA--LDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t-------~~~~r~~~--~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|++|++++|+|||++|||+... +.....+. +++|+|+++||.+.+++.....+...+ +.+...+.. +
T Consensus 7 ~P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~~~~~~~~~~~-~~~d~~i~~--~ 83 (330)
T d1ps9a1 7 APLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAM-LNDASQIPH--H 83 (330)
T ss_dssp CCEECSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCB-CCSGGGHHH--H
T ss_pred CCccCCCEEeCCCcEeCCCCCCcCCCCCCcHHHHHHHHHHHhCCeEEEEEeeeEEcCCccccCCCcc-cCCcccccc--c
Confidence 57799999999999999997321 11122222 367999999999987654332222112 223223322 5
Q ss_pred ceeeecCCCCCCceEEEecCCC----------------------------------HHHHHHHHHHHhc-CCCEEEEccC
Q psy4398 91 SVVFRTCPREKNKIILQIGTAD----------------------------------PERALEAAKKVEH-DVAAIDINMG 135 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~~----------------------------------~~~~~~aa~~~~~-g~d~veln~g 135 (306)
+.+.+.+|++|.++++||++.. .++|+++|+++++ |||+||||.+
T Consensus 84 k~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~aA~ra~~AGfDgVEIh~a 163 (330)
T d1ps9a1 84 RTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGS 163 (330)
T ss_dssp HHHHHHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred ccceeeeecCCCeehhhhhhcCCccccCcccCCccccccccCCCChhcChhHHHHHHHHHHHHHHHHHHhCcCeeeeccc
Confidence 6677888889999999997542 2689999999975 9999999987
Q ss_pred ---------CCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc------CCChHHHHHHHHHHHHcCCc
Q psy4398 136 ---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV------FHNEADTIALCKRLEACGII 198 (306)
Q Consensus 136 ---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~------g~~~~~~~~~a~~l~~~G~d 198 (306)
||..|.|+|+||++++||.+++.|++++||++++ ++|.+|++. +.+.++..++++.++++|+|
T Consensus 164 hGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d 243 (330)
T d1ps9a1 164 EGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGAT 243 (330)
T ss_dssp BTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhh
Confidence 8999999999999999999999999999999995 667777775 45678899999999999999
Q ss_pred EEEEcccCCCCC-------CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCCCchHHH
Q psy4398 199 AIGVHGRTKAER-------PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVEKLPKTI 267 (306)
Q Consensus 199 ~i~v~~~~~~~~-------~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p~~~~~~ 267 (306)
.++++....... ........+.+++++.+++|||++|+|+|++.++++++. +|++||++++||+|+++.
T Consensus 244 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~k~ 323 (330)
T d1ps9a1 244 IINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKA 323 (330)
T ss_dssp EEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHH
T ss_pred hhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHHHH
Confidence 999875432111 111124567789999999999999999999999999987 459999999999998764
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=100.00 E-value=1.9e-34 Score=266.29 Aligned_cols=245 Identities=10% Similarity=0.017 Sum_probs=186.4
Q ss_pred ccccccccccCCceEEccCCCCC--C---HH--HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMN--T---LP--FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t--~---~~--~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
.|+++++++|+|||++|||+... + .. |....+++|+|+++||.+.+.+...........+.+...+.. ++.
T Consensus 11 ~P~~ig~~~l~NRiv~apm~~~~~~~~~~~~~~~~~~rA~gG~gliite~~~v~~~~~~~~~~~~~~~~d~~i~~--~~~ 88 (340)
T d1djqa1 11 EPIQIGPKTLRNRFYQVPHAIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRN--LKA 88 (340)
T ss_dssp SCEEETTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHH--HHH
T ss_pred CCceECCEEECCCeEeCCCCCCCCCCCCHHHHHHHHHHhccCeEEEEEEEEEeccccccCCCCCccccceeecch--hhh
Confidence 46699999999999999998422 1 11 222234789999999999876533221111111222222221 566
Q ss_pred eeecCCCCCCceEEEecCCC---------------------------------------HHHHHHHHHHHhc-CCCEEEE
Q psy4398 93 VFRTCPREKNKIILQIGTAD---------------------------------------PERALEAAKKVEH-DVAAIDI 132 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~---------------------------------------~~~~~~aa~~~~~-g~d~vel 132 (306)
+.+.+|+.|..+++||++.+ .++|+++|+++++ |||+|||
T Consensus 89 l~~~vh~~g~~i~~Ql~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEi 168 (340)
T d1djqa1 89 MTDEVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYV 168 (340)
T ss_dssp HHHHHHHTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred hHHHhhcccceeeEeeeeccccccccccCCcccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHhccceeee
Confidence 77888888999999996531 2679999999975 9999999
Q ss_pred ccC---------CCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccC------C-ChHHHHHHHHHHHH
Q psy4398 133 NMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVF------H-NEADTIALCKRLEA 194 (306)
Q Consensus 133 n~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g------~-~~~~~~~~a~~l~~ 194 (306)
|.+ ||.+|.|+|+||+++++|.+++.||+++||+++ ++||.+|++.. . +.+.....+..+++
T Consensus 169 h~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~ 248 (340)
T d1djqa1 169 YGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMAD 248 (340)
T ss_dssp EECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHT
T ss_pred eccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccccCCCCchhhhHHHHHHHHh
Confidence 987 899999999999999999999999999999999 46788888751 1 22334556677888
Q ss_pred cCCcEEEEcccCCC---------CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhccccCCCC
Q psy4398 195 CGIIAIGVHGRTKA---------ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNHYPVE 261 (306)
Q Consensus 195 ~G~d~i~v~~~~~~---------~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGrall~~p 261 (306)
.|+|.+.++..... ..+.....+++++.+++.+++|||++|||+|+++++++++. +|++||++++||
T Consensus 249 ~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadP 328 (340)
T d1djqa1 249 SLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADP 328 (340)
T ss_dssp TTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCT
T ss_pred hccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHHCc
Confidence 99999998754311 11123346788999999999999999999999999999986 459999999999
Q ss_pred CchHH
Q psy4398 262 KLPKT 266 (306)
Q Consensus 262 ~~~~~ 266 (306)
.|+++
T Consensus 329 dl~~k 333 (340)
T d1djqa1 329 FLPQK 333 (340)
T ss_dssp THHHH
T ss_pred cHHHH
Confidence 98876
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=100.00 E-value=6.5e-35 Score=265.91 Aligned_cols=255 Identities=17% Similarity=0.205 Sum_probs=199.7
Q ss_pred ccc-ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhh-----hhhhhhcccccccccCCCCC
Q psy4398 17 LDM-ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK-----TERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 17 ~~~-~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|+ |+++++|++|+|||++|++...++..+..+....|+|++++++++..+... -.+...+++++.++.+.+..
T Consensus 3 ~~~~L~~~~~Gl~l~nPi~~aAG~~~~~~~~~~~~~~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~~~~g~~ 82 (311)
T d1ep3a_ 3 ENNRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLE 82 (311)
T ss_dssp CCTTTCEEETTEEESSSEEECTTSSTTSTTGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHH
T ss_pred CCCcceEEECCEEcCCCcEECCCCCCCCHHHHHhhhhcCccEEEEeeEcccccCCCCCCeEeeecccccccccccchhHH
Confidence 455 999999999999999999887667666665557899999999998765321 11234567777788777643
Q ss_pred ceeee---cC--CCCCCceEEEecCCCHHHHHHHHHHHhc--CCCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 91 SVVFR---TC--PREKNKIILQIGTADPERALEAAKKVEH--DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 91 ~~~~~---~~--~~~~~p~ivql~g~~~~~~~~aa~~~~~--g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
....+ .. ...+.|+++|+++..++++.++++.+.+ |+|+||||++||+... .+.....+++.+.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~----~~~~~~~~~~~~~~~~~~ 158 (311)
T d1ep3a_ 83 VIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKH----GGQAFGTDPEVAAALVKA 158 (311)
T ss_dssp HHHHTHHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGG----TTEEGGGCHHHHHHHHHH
T ss_pred HHhhhhhhhhhcccCCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCcccc----cccccccCHHHHHHHHHH
Confidence 22111 11 1246799999999999999999887753 8999999999998532 234566889999999999
Q ss_pred HHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC----------------CCCCC----CCcHHHHHHH
Q psy4398 164 LISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA----------------ERPRH----RNRIEMIRTL 223 (306)
Q Consensus 164 v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~----------------~~~~~----p~~~~~v~~i 223 (306)
+++....|+.+|++. +..+..++++.++++|+++++++++... +..++ |..|++++++
T Consensus 159 v~~~~~~p~~vkl~~--~~~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i 236 (311)
T d1ep3a_ 159 CKAVSKVPLYVKLSP--NVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQV 236 (311)
T ss_dssp HHHHCSSCEEEEECS--CSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHH
T ss_pred HHhccCCCeeeeecc--cccchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHH
Confidence 999999999999995 4446778999999999999998764311 01122 3458999999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCc-hHH--HHHHHHHhcCC
Q psy4398 224 TQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKL-PKT--ILYAHCKYKRF 277 (306)
Q Consensus 224 ~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~-~~~--~l~~~~~~~g~ 277 (306)
++.+++|||++|||.|.+|+.+.+..| ||+||++|.+|++ .++ +|.+||+++||
T Consensus 237 ~~~~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~P~i~~~I~~~L~~~m~~~g~ 296 (311)
T d1ep3a_ 237 AQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQYRI 296 (311)
T ss_dssp HTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHHTTC
T ss_pred hhhcceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcCChHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999998875 5999999999944 444 99999999994
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.98 E-value=2e-32 Score=249.85 Aligned_cols=255 Identities=17% Similarity=0.197 Sum_probs=188.6
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhh---h-------------hhhccccccc
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTE---R-------------KVNDLLNTID 83 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~---~-------------~~~~~l~~~~ 83 (306)
|+++++|++|+|||++|++....+..+.....+.|+|++++++++..+..... | ...+++|..+
T Consensus 1 Lsv~~~Gl~l~nPi~~Asg~~~~~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~~n~~g 80 (312)
T d1gtea2 1 ISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIEL 80 (312)
T ss_dssp CCEEETTEEESSSEEECSSGGGSSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCC
T ss_pred CcEEECCEEcCCCcEECCcCCCCCHHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCcccccccccccccccc
Confidence 57899999999999999987666766665566899999999999754322111 0 0123344445
Q ss_pred ccCCCCCcee---e---ecCCCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHH
Q psy4398 84 FVDPLDGSVV---F---RTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDI 156 (306)
Q Consensus 84 ~~~~~~~~~~---~---~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~ 156 (306)
+.+.+..... . ...+ .+.+++.+..+.++++|.++++.+++ |+|+||||++||+....+ +.|..+..+++.
T Consensus 81 ~~~~g~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~-~~~~~~~~~~~~ 158 (312)
T d1gtea2 81 ISEKTAAYWCQSVTELKADFP-DNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGER-GMGLACGQDPEL 158 (312)
T ss_dssp SCSSCHHHHHHHHHHHHHHCT-TSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC------SBGGGCHHH
T ss_pred ccccchhhhhhhhcccccccc-ccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCccccc-ccchhhhhhHHH
Confidence 5554322111 0 1111 23334445568899999999998875 999999999999964333 467778889999
Q ss_pred HHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC----------------------CCCCCC-
Q psy4398 157 ACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK----------------------AERPRH- 213 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~----------------------~~~~~~- 213 (306)
+.++++++++.+.+||+||++ ++.++..++++.++++|+|+|+++++.. .+.+++
T Consensus 159 ~~~i~~~v~~~~~~pv~vKl~--~~~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~ 236 (312)
T d1gtea2 159 VRNICRWVRQAVQIPFFAKLT--PNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGT 236 (312)
T ss_dssp HHHHHHHHHHHCSSCEEEEEC--SCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESG
T ss_pred HHHHHHHHhhccCCceeeccc--ccchhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCc
Confidence 999999999999999999999 5556778999999999999999865421 011222
Q ss_pred ---CCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC-CCC-chHH--HHHHHHHhcCCC
Q psy4398 214 ---RNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP-VEK-LPKT--ILYAHCKYKRFE 278 (306)
Q Consensus 214 ---p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~-~p~-~~~~--~l~~~~~~~g~~ 278 (306)
|..+++++++++.+ ++|||++|||.|.+|+.+.+..|+ |+||+++. +|. +.++ +|++||+++||+
T Consensus 237 ~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G~~~i~~i~~~L~~~m~~~g~~ 312 (312)
T d1gtea2 237 AIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIE 312 (312)
T ss_dssp GGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHTTCG
T ss_pred CcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhccChHHHHHHHHHHHHHHHHcCCC
Confidence 23588999999998 699999999999999999998864 99999865 674 4444 999999999985
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=99.98 E-value=1.3e-32 Score=255.89 Aligned_cols=241 Identities=14% Similarity=0.160 Sum_probs=188.3
Q ss_pred ccccccccccCCceEEccCCCC--------CCHHH-HHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM--------NTLPF-RLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--------t~~~~-r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
.|++|++++|||||++|||+.. ++..+ ..+.+++|+|+++||.+.+.+.........+ +.+...+.. +
T Consensus 6 ~P~~ig~~~lkNRiv~apm~~~~a~~~g~~~~~~~~~yy~~ra~~Glii~e~~~V~~~~~~~~~~~~-l~~d~~i~~--~ 82 (363)
T d1vyra_ 6 TPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPG-LHSPEQIAA--W 82 (363)
T ss_dssp SCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCB-SSSHHHHHH--H
T ss_pred CCccCCCEEECCCeEEccccCCcCCCCCCCCHHHHHHHHHHHcCcCEEEEeeeEECccccCCCCCCc-cCChhhccc--c
Confidence 6789999999999999999832 22323 3445578899999999887654322222112 222222322 5
Q ss_pred ceeeecCCCCCCceEEEecCCC------------------------------------------------------HHHH
Q psy4398 91 SVVFRTCPREKNKIILQIGTAD------------------------------------------------------PERA 116 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~~------------------------------------------------------~~~~ 116 (306)
+.+.+.+|++|.++++||++.+ .++|
T Consensus 83 k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f 162 (363)
T d1vyra_ 83 KKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDF 162 (363)
T ss_dssp HHHHHHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHH
T ss_pred hhhhhhhhhcCCeeeeeeeccCccccccccCCCcceeecccccccccccccCcccccccCCCCCchhhhHHHHHHHHHHH
Confidence 6677788888999999996431 2479
Q ss_pred HHHHHHHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEecc-------
Q psy4398 117 LEAAKKVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRV------- 178 (306)
Q Consensus 117 ~~aa~~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~------- 178 (306)
++||+++++ |||+||||.+ +|..|.|+|.||++++||.+++.||+++||++++ .+|.++++.
T Consensus 163 ~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~ 242 (363)
T d1vyra_ 163 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 242 (363)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTB
T ss_pred HHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccch
Confidence 999999975 9999999976 7999999999999999999999999999999994 358888875
Q ss_pred ---CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hh
Q psy4398 179 ---FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NC 251 (306)
Q Consensus 179 ---g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v 251 (306)
+.+.++..++++.|++.|+|+++++...... ..+....+...+++.+++||+++|+ .|++.++++++. +|
T Consensus 243 ~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~--~~~~~~~~~~~~~~~~~~~vi~~G~-~t~~~ae~~l~~G~~DlV 319 (363)
T d1vyra_ 243 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAG--GKPYSEAFRQKVRERFHGVIIGAGA-YTAEKAEDLIGKGLIDAV 319 (363)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTB--CCCCCHHHHHHHHHHCCSEEEEESS-CCHHHHHHHHHTTSCSEE
T ss_pred hhcccchHHHHHHHHHHHhcCCeeeecccCCccC--CccccHHHHHHHHHhcCceEEecCC-CCHHHHHHHHHCCCccee
Confidence 2235678999999999999999998654322 2245677889999999999998875 589999999986 46
Q ss_pred hhccccCCCCCchHH
Q psy4398 252 AFLRNHYPVEKLPKT 266 (306)
Q Consensus 252 ~vGrall~~p~~~~~ 266 (306)
.+||++++||.|+++
T Consensus 320 ~~gR~liadP~~~~K 334 (363)
T d1vyra_ 320 AFGRDYIANPDLVAR 334 (363)
T ss_dssp EESHHHHHCTTHHHH
T ss_pred hhhHHHHHCccHHHH
Confidence 999999999999876
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.97 E-value=2.9e-31 Score=247.59 Aligned_cols=242 Identities=15% Similarity=0.131 Sum_probs=183.0
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
.|++|++++|||||++|||+. +|+.....+.+++++|+++||.+.+.+.........++ .+..++.. ++.
T Consensus 10 ~Pl~Ig~~~lkNRiv~apm~~~~~~dg~~t~~~~~yy~~rA~gGlii~e~~~V~~~~~~~~~~~~i-~~d~~i~~--~k~ 86 (374)
T d1gwja_ 10 TPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGI-WTDAQEAG--WKG 86 (374)
T ss_dssp SCEEETTEEESCSEEECCCCCCCCSSSCCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCBTTCCBC-SSHHHHHH--HHH
T ss_pred CCeeECCEEECCCeEEcccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEEeEEECCccCCCCCCCcc-chhhhhhh--hhh
Confidence 677999999999999999973 34445555566777899999998876544322222222 22222221 556
Q ss_pred eeecCCCCCCceEEEecCCC-------------------------------------------------------HHHHH
Q psy4398 93 VFRTCPREKNKIILQIGTAD-------------------------------------------------------PERAL 117 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~~-------------------------------------------------------~~~~~ 117 (306)
+.+.+|++|.++++||++.. .++|+
T Consensus 87 l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 166 (374)
T d1gwja_ 87 VVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPGIVEDYR 166 (374)
T ss_dssp HHHHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHH
T ss_pred HHHHHhccCcceEeeeeccCcccccccCCCCCceeccccccccCccccccccccccccCCCCCccccCHHHHHHHHHHHH
Confidence 77788888999999996431 25799
Q ss_pred HHHHHHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccC-----C-
Q psy4398 118 EAAKKVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVF-----H- 180 (306)
Q Consensus 118 ~aa~~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g-----~- 180 (306)
++|+++++ |||+||||.+ +|..|.|+|.||++++||.+++.||+++||++++ ..+.+++... .
T Consensus 167 ~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~ 246 (374)
T d1gwja_ 167 QAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLT 246 (374)
T ss_dssp HHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCC
T ss_pred HHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeeccccCCc
Confidence 99999975 9999999976 7999999999999999999999999999999984 4466666541 1
Q ss_pred -C--hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhh
Q psy4398 181 -N--EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAF 253 (306)
Q Consensus 181 -~--~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~v 253 (306)
. ......+++.++..|+++++++........ .+....+...+++.+++|||++|++ +++.++++++. +|++
T Consensus 247 ~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~ 324 (374)
T d1gwja_ 247 DDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD-ITYPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAF 324 (374)
T ss_dssp CSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBC-CCCCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred ccchHHHHHHhhccccccCceEEEeccCcccCCC-cchhHHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHcCCCcEehh
Confidence 1 122566788899999999999764322111 1112236788999999999999999 79999999986 4699
Q ss_pred ccccCCCCCchHH
Q psy4398 254 LRNHYPVEKLPKT 266 (306)
Q Consensus 254 Grall~~p~~~~~ 266 (306)
||++++||.|+++
T Consensus 325 gR~~iadPd~~~K 337 (374)
T d1gwja_ 325 GRPFIANPDLPER 337 (374)
T ss_dssp SHHHHHCTTHHHH
T ss_pred hHHHHHCccHHHH
Confidence 9999999999987
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.97 E-value=6.5e-31 Score=239.48 Aligned_cols=263 Identities=13% Similarity=0.099 Sum_probs=202.9
Q ss_pred cccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh-----hhhhhcccccccccCCCCCcee
Q psy4398 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT-----ERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 19 ~~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+|+++++|++|+|||++|++....+..........|+|++++++++.++.... .+...+.+|+.++.|+|.+..+
T Consensus 1 ~Ls~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~~~G~G~vv~ktit~~~~~gn~~pr~~~~~~~~~n~~G~~n~g~~~~~ 80 (311)
T d1juba_ 1 MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYL 80 (311)
T ss_dssp CCCEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHH
T ss_pred CeeEEECCEecCCCCEECCCCCCCCHHHHHHHHHCCCcEEEEEEEeeccccCCCCCeEEEccccchhhhhhcCchhHHHH
Confidence 47899999999999999999976777666555688999999999987764311 1224567888888888753322
Q ss_pred ee---cC--CCCCCceEEEecCCCHHHHHHHHHHHh-c-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh
Q psy4398 94 FR---TC--PREKNKIILQIGTADPERALEAAKKVE-H-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS 166 (306)
Q Consensus 94 ~~---~~--~~~~~p~ivql~g~~~~~~~~aa~~~~-~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~ 166 (306)
.+ .. ...+.|+++++.+.+.+++.+.++.++ . ++|.+|||++||+... +..+..+++.+.++++++++
T Consensus 81 ~~~~~~~~~~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~-----~~~~~~~~~~~~~~~~~v~~ 155 (311)
T d1juba_ 81 DYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPG-----EPQLAYDFEATEKLLKEVFT 155 (311)
T ss_dssp HHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSS-----CCCGGGCHHHHHHHHHHHTT
T ss_pred HHHHHhhhhcccCCCceeeccccccchhHHHHHHHhhccccceeeeccccccccc-----cccccccHHHHHHHHHHhhc
Confidence 11 11 123579999999999999998888776 3 5899999999999521 22345789999999999999
Q ss_pred cccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccC---------C----------CCCCCC----CCcHHHHHHH
Q psy4398 167 NLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT---------K----------AERPRH----RNRIEMIRTL 223 (306)
Q Consensus 167 ~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~---------~----------~~~~~~----p~~~~~v~~i 223 (306)
.+..|+.+|++...+..+...+++.+.+.|+++++..+.. . .+.+++ |..+++++++
T Consensus 156 ~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i 235 (311)
T d1juba_ 156 FFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAF 235 (311)
T ss_dssp TCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHH
T ss_pred ccccceeecccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHH
Confidence 9999999999976666677888999999999999864321 0 011222 3357888999
Q ss_pred HhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhcccc-CCCC-CchHH--HHHHHHHhcCCCCCcceehhhccceeeE
Q psy4398 224 TQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNH-YPVE-KLPKT--ILYAHCKYKRFEVPKYETVQYEKLFRSL 294 (306)
Q Consensus 224 ~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGral-l~~p-~~~~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 294 (306)
++.+ ++|||++|||.|.+|+.+.+.+|+ |++|++ +.+| ...++ +|++||+++| |+++
T Consensus 236 ~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~Gp~~i~~i~~~L~~~m~~~G--------------~~si 301 (311)
T d1juba_ 236 YTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKG--------------YQSI 301 (311)
T ss_dssp HTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHHHT--------------CCSG
T ss_pred HHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHhcChHHHHHHHHHHHHHHHHcC--------------CCCH
Confidence 9888 599999999999999999998865 999998 5689 44444 9999999999 7777
Q ss_pred EEEcCc
Q psy4398 295 VTVNGK 300 (306)
Q Consensus 295 ~~~~~~ 300 (306)
.|++|+
T Consensus 302 ~e~~G~ 307 (311)
T d1juba_ 302 ADFHGK 307 (311)
T ss_dssp GGTTTC
T ss_pred HHhcCc
Confidence 777774
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.96 E-value=2.9e-30 Score=243.34 Aligned_cols=260 Identities=14% Similarity=0.097 Sum_probs=195.2
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhh-------hhhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK-------TERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
+++++.|++|+|||++|++.+.+...++.+. +.|+|++++++++.++... ..+...+++|++++.|+|....
T Consensus 51 L~~~v~Gl~f~NPiglAAG~dk~~~~i~~~~-~lGfG~ve~gTvT~~p~~GNp~PR~~r~~~~~~liN~~Gl~n~G~~~~ 129 (409)
T d1tv5a1 51 ACTNIKHLDFINPFGVAAGFDKNGVCIDSIL-KLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKV 129 (409)
T ss_dssp GCEEETTEEESSSEEECTTTTTTCSSHHHHH-TTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHH
T ss_pred cceEECCeecCCcCEeccccCCCHHHHHHHH-hcCCCeEEeeeeeeccccCCCCccccccccccccccccCCCcccHHHH
Confidence 9999999999999999999887777777765 7899999999999776431 1223457899999999985432
Q ss_pred eeec----------CCCCCCceEEEecCC----CHH-HHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHH
Q psy4398 93 VFRT----------CPREKNKIILQIGTA----DPE-RALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIA 157 (306)
Q Consensus 93 ~~~~----------~~~~~~p~ivql~g~----~~~-~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~ 157 (306)
..+. .+....++.+++..+ +.. ++..+.+....++|++|||++|||. -|....++++.+
T Consensus 130 ~~~l~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~~~~~~~aD~~elNiScPNt------~glr~~~~~~~L 203 (409)
T d1tv5a1 130 TENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNT------PGLRDNQEAGKL 203 (409)
T ss_dssp HHHHHHHHHHHHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTS------TTGGGGGSHHHH
T ss_pred HHHHHHHhhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhhcccceeeccccccc------cccccccCHHHH
Confidence 2111 111223455566432 233 3444444445689999999999995 244555789999
Q ss_pred HHHHHHHHhcc---------------------------------------------------cccEEEEeccCCChHHHH
Q psy4398 158 CNILTTLISNL---------------------------------------------------SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 158 ~eiv~~v~~~~---------------------------------------------------~~pv~vKir~g~~~~~~~ 186 (306)
.++++++++.. ..|++||+++..+.++..
T Consensus 204 ~~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~~~i~ 283 (409)
T d1tv5a1 204 KNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKK 283 (409)
T ss_dssp HHHHHHHHHHHHHHC--------------------------------------CCCCSSSSSCCEEEEEECSCCCHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccccccccchhhhhhccccccccccccccchhhhhhccccccCCceEEEeCCCCCchhhH
Confidence 99999997643 138999999665677799
Q ss_pred HHHHHHHHcCCcEEEEcccCCC-----------CCCCC----CCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKA-----------ERPRH----RNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~-----------~~~~~----p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~ 249 (306)
++++.+++.|+|+++++..+.. ++.++ |..+++++++++.+ ++|||++|||.|.+|+.+.+.+
T Consensus 284 ~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~A 363 (409)
T d1tv5a1 284 EIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEA 363 (409)
T ss_dssp HHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHT
T ss_pred HHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHc
Confidence 9999999999999998765422 12222 34688999999998 4999999999999999999998
Q ss_pred hh---hhcccc-CCCC-CchHH--HHHHHHHhcCCCCCcceehhhccceeeEEEEcCc
Q psy4398 250 NC---AFLRNH-YPVE-KLPKT--ILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGK 300 (306)
Q Consensus 250 ~v---~vGral-l~~p-~~~~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (306)
|+ |+||++ |.+| ...++ +|++||+++| |+++.+++|+
T Consensus 364 GAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~~~g--------------~~~i~e~iG~ 407 (409)
T d1tv5a1 364 GASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRG--------------YYNLKEAIGR 407 (409)
T ss_dssp TEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHHT--------------CSSSGGGTTT
T ss_pred CCCHHhhhhHHHhcChHHHHHHHHHHHHHHHHcC--------------CCCHHHhcCC
Confidence 65 999997 7889 44454 9999999999 6666666665
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.96 E-value=7.1e-30 Score=232.83 Aligned_cols=262 Identities=12% Similarity=0.053 Sum_probs=192.4
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhh-----hhhhhhcccccccccCCCCCce--
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVK-----TERKVNDLLNTIDFVDPLDGSV-- 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~-- 92 (306)
|++++.|++|+|||++|+++...+..+.......|+|++++++++.++... -.+...+.+|.+++.|+|.+..
T Consensus 2 L~v~~~Gl~l~nPi~~aaG~~~~~~~~~~~~~~~g~g~vv~ktit~~p~~gnp~Pr~~~~~~~~~N~~G~~n~G~~~~~~ 81 (312)
T d2b4ga1 2 LKVNILGHEFSNPFMNAAGVLCTTEEDLRRMTESESGSLIGKSCTLAPRTGNPEPRYFGLPLGSINSMGLPNLGVDFYLS 81 (312)
T ss_dssp CCEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHH
T ss_pred CcEEECCEECCCCcEeCcCCCCCCHHHHHHHHHcCCCEEEeCcccccCCCCCCCCeEEecCchheeccccCcchHHHHHH
Confidence 678999999999999999875566665555558999999999998766431 1223456789999999875322
Q ss_pred -eeecCCCCCCceEEEecCCCHHHHHHHHHHH----hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhc
Q psy4398 93 -VFRTCPREKNKIILQIGTADPERALEAAKKV----EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISN 167 (306)
Q Consensus 93 -~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~----~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~ 167 (306)
+.+.....+.|+++++.+.+.+++.+.++.+ ++++|++|||++|||.. + +..+..+++.+.++++++++.
T Consensus 82 ~l~~~~~~~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~---~--~~~~~~~~~~~~~i~~~v~~~ 156 (312)
T d2b4ga1 82 YAAQTHDYSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVP---G--KPQVGYDFDTTRTYLQKVSEA 156 (312)
T ss_dssp HHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCST---T--CCCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccceeccccccccccHHHHHHHHHHhhhhcccceeeccccCCcC---c--chhhhccHHHHHHHHHHhhcc
Confidence 1222223467999999999988887776643 34899999999999952 1 234567899999999999999
Q ss_pred ccccEEEEeccCCChHHHHHHHHHHHHcC-CcEEEEcccC----------C---------CCCCCCC----CcHHHHHHH
Q psy4398 168 LSIPVSCKIRVFHNEADTIALCKRLEACG-IIAIGVHGRT----------K---------AERPRHR----NRIEMIRTL 223 (306)
Q Consensus 168 ~~~pv~vKir~g~~~~~~~~~a~~l~~~G-~d~i~v~~~~----------~---------~~~~~~p----~~~~~v~~i 223 (306)
+..|+.+|++...+..+....+..+.+.+ ++.+...... . .+.++++ ..+++++++
T Consensus 157 ~~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~ 236 (312)
T d2b4ga1 157 YGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAF 236 (312)
T ss_dssp HCSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHHH
T ss_pred ccccceeccccccchhHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCcccccccchhhHHHHHH
Confidence 99999999995444444555555555554 4444432100 0 0223333 357889999
Q ss_pred HhhC-CCcEEEecCCCCHHHHHHHHHhhh---hhcccc-CCCC-CchHH--HHHHHHHhcCCCCCcceehhhccceeeEE
Q psy4398 224 TQHL-KIPVIANGGSKEIVDYGGVFSLNC---AFLRNH-YPVE-KLPKT--ILYAHCKYKRFEVPKYETVQYEKLFRSLV 295 (306)
Q Consensus 224 ~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~vGral-l~~p-~~~~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 295 (306)
++.+ +.|||++|||.|.+|+.+.+.+|+ |+++++ +.+| ...++ +|++||+++| |+|+.
T Consensus 237 ~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~i~~~L~~~l~~~G--------------~~si~ 302 (312)
T d2b4ga1 237 FRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEGPIIFARLNKELQEIMTNKG--------------YKTLD 302 (312)
T ss_dssp HHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHHCTTHHHHHHHHHHHHHHHHT--------------CCSGG
T ss_pred HHHcCCCceeecCCcCCHHHHHHHHHcCCChheeehhhHhcCcHHHHHHHHHHHHHHHHcC--------------CCCHH
Confidence 8888 678999999999999999998865 999997 5789 44554 9999999999 66666
Q ss_pred EEcCc
Q psy4398 296 TVNGK 300 (306)
Q Consensus 296 ~~~~~ 300 (306)
|++|+
T Consensus 303 e~~G~ 307 (312)
T d2b4ga1 303 EFRGR 307 (312)
T ss_dssp GTTTC
T ss_pred HHcCe
Confidence 76664
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=99.96 E-value=4e-30 Score=241.67 Aligned_cols=247 Identities=11% Similarity=0.077 Sum_probs=175.2
Q ss_pred ccccccccccCCceEEccCCCC--------C--CHHHHHHHH--HcCCCEEEecceechhhhhhhhhhhcccccccccCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM--------N--TLPFRLLAL--DYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--------t--~~~~r~~~~--~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (306)
.|++|++++|||||++|||+.. + +...+.+.+ ++|+|+++||.+.+.+.........+++ +...+..
T Consensus 18 sP~~Ig~~~lkNRiv~apm~~~~a~~~G~~~~~d~~i~yy~~rA~GG~GlIi~e~~~V~~~g~~~~~~~~l~-~d~~i~~ 96 (399)
T d1oyaa_ 18 KPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVW-SEEQMVE 96 (399)
T ss_dssp SCEEETTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEEEEEEESSGGGCCCTTSCBSS-SHHHHHH
T ss_pred CCeeECCEEecCccEECCccCCcCCCCCCCCCHHHHHHHHHHHHcCCeEEEEeccEEECcccCCCCCCCccC-CHHHHHH
Confidence 7889999999999999999842 2 323333432 5789999999988776433322222222 2222222
Q ss_pred CCCceeeecCCCCCCceEEEecCCC--------------------------------------------------HHHHH
Q psy4398 88 LDGSVVFRTCPREKNKIILQIGTAD--------------------------------------------------PERAL 117 (306)
Q Consensus 88 ~~~~~~~~~~~~~~~p~ivql~g~~--------------------------------------------------~~~~~ 117 (306)
++.+.+.+|++|.++++||++.+ .++|+
T Consensus 97 --~k~l~~~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 174 (399)
T d1oyaa_ 97 --WTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYV 174 (399)
T ss_dssp --HHHHHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCEEESCSSCCSCHHHHHHHHHTTCCEEECCHHHHHHHHHHHH
T ss_pred --HhHHHHHHHhhccccchhhhhhccccCccccccccccccCccccccCCCCCCcccccCCCCcchhhhHHHHHHHHHHH
Confidence 56677888889999999997531 25799
Q ss_pred HHHHHHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccC------C
Q psy4398 118 EAAKKVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVF------H 180 (306)
Q Consensus 118 ~aa~~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g------~ 180 (306)
+||+++++ |||+||||.+ +|.+|.|+|+||++++||.+++.||+++||+++ ..||.+|++.. .
T Consensus 175 ~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~~d~~~~~~ 254 (399)
T d1oyaa_ 175 QAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 254 (399)
T ss_dssp HHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCC
T ss_pred HHHHHHHHhCCceEehhhhHHHHHHHhhcccccccccccCcchhhhhHHHHHHHHhhhheeeccCceEEechhhcccccC
Confidence 99999975 9999999986 799999999999999999999999999999998 35899999851 1
Q ss_pred C------hHHHHHHHHHHHHcC-----CcEEEEcccCCCCCC----CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q psy4398 181 N------EADTIALCKRLEACG-----IIAIGVHGRTKAERP----RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGG 245 (306)
Q Consensus 181 ~------~~~~~~~a~~l~~~G-----~d~i~v~~~~~~~~~----~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~ 245 (306)
+ ..+..++++.++..+ .+.+++......... ...........+++.+++|||++|||.+.+++.+
T Consensus 255 ~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~PVi~~G~i~~~~~~~~ 334 (399)
T d1oyaa_ 255 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVR 334 (399)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSCCTTHHHHHCCSCEEEESSCTTCHHHHH
T ss_pred CccccchHHHHHHHHHHHHHhccccccccceeeecccCCCccccccccccchhHHHHHHHHhCCCEEEECCCCChHHHHH
Confidence 1 124566677776543 455554432211111 1111112335678889999999999987666655
Q ss_pred HHHh----hhhhccccCCCCCchHHHHH
Q psy4398 246 VFSL----NCAFLRNHYPVEKLPKTILY 269 (306)
Q Consensus 246 ~l~~----~v~vGrall~~p~~~~~~l~ 269 (306)
.+.. +|.+||++++||.|+++..+
T Consensus 335 ~i~~~~aDlV~~gR~liaDP~l~~K~~~ 362 (399)
T d1oyaa_ 335 EEVKDKRTLIGYGRFFISNPDLVDRLEK 362 (399)
T ss_dssp HHTTSTTEEEECCHHHHHCTTHHHHHHH
T ss_pred HHHcCCCeEhHHHHHHHHCccHHHHHHc
Confidence 5543 56999999999999987433
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=99.96 E-value=5.7e-30 Score=237.96 Aligned_cols=243 Identities=14% Similarity=0.111 Sum_probs=177.1
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHHHHc-CCCEEEecceechhhhhhhhhhhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLALDY-GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~~~~-G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (306)
.|++|++++|||||++|||.. .++..+..+.+++ |.|+++||.+.+.+.........+ +.+...+.. ++
T Consensus 9 sP~~ig~~~LkNRiv~apm~~~~a~~g~p~~~~~~~y~~rA~gGgliite~~~V~~~g~~~~~~~~-l~~d~~i~~--~k 85 (364)
T d1icpa_ 9 SPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPG-IWTKEQVEA--WK 85 (364)
T ss_dssp SCEEETTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCB-CSSHHHHHH--HH
T ss_pred CCceECCEEeCCccEecccCCCcCCCCCCCHHHHHHHHHHHhCceEEEEccEEECCcccCCCCCce-echhhhhhh--HH
Confidence 677999999999999999973 2334444444332 349999998876653322221112 222223322 56
Q ss_pred eeeecCCCCCCceEEEecCCC--------------------------------------------------HHHHHHHHH
Q psy4398 92 VVFRTCPREKNKIILQIGTAD--------------------------------------------------PERALEAAK 121 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~--------------------------------------------------~~~~~~aa~ 121 (306)
.+.+.+|++|.++++||++.+ .++|+++|+
T Consensus 86 ~l~~~ih~~g~~~~~QL~H~Gr~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 165 (364)
T d1icpa_ 86 PIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAAR 165 (364)
T ss_dssp HHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCceEEeeccCCcccccccccCCCCCccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHHH
Confidence 677888888999999996421 378999999
Q ss_pred HHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEecc-------CCChH
Q psy4398 122 KVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRV-------FHNEA 183 (306)
Q Consensus 122 ~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~-------g~~~~ 183 (306)
++++ |||+||||++ +|..|.|+|+||++++||.+++.||+++||++++ .++.++++. +.+.+
T Consensus 166 rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~ 245 (364)
T d1icpa_ 166 NAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNP 245 (364)
T ss_dssp HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCH
T ss_pred HHHHhCCCeEEEeccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEecccccccCCcCcch
Confidence 9975 9999999975 7999999999999999999999999999999984 468888875 22223
Q ss_pred H--HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhcccc
Q psy4398 184 D--TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNH 257 (306)
Q Consensus 184 ~--~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGral 257 (306)
+ .+..++.++..+++.+++...............+....+++.++.|+|++||+ |.++++++++. +|++||++
T Consensus 246 ~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~ 324 (364)
T d1icpa_ 246 TALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLF 324 (364)
T ss_dssp HHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHH
T ss_pred HHHHHHHHHHhhccceeeeeeecCcccccccccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHcCCCceehhHHHH
Confidence 3 34555666677888888765443332222223445678889999999999986 78999999986 56999999
Q ss_pred CCCCCchHH
Q psy4398 258 YPVEKLPKT 266 (306)
Q Consensus 258 l~~p~~~~~ 266 (306)
++||.|+++
T Consensus 325 iadPd~~~k 333 (364)
T d1icpa_ 325 ISNPDLPKR 333 (364)
T ss_dssp HHCTTHHHH
T ss_pred HHCccHHHH
Confidence 999999876
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.5e-29 Score=235.57 Aligned_cols=264 Identities=16% Similarity=0.094 Sum_probs=186.8
Q ss_pred ecccccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh-------hhhhhcccccccccCCC
Q psy4398 16 VLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT-------ERKVNDLLNTIDFVDPL 88 (306)
Q Consensus 16 ~~~~~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-------~~~~~~~l~~~~~~~~~ 88 (306)
..+.|+++++|++|+|||++|++.+.+...++.+. +.|+|++++++++.++.... .....++++..++.++|
T Consensus 46 ~~~~L~v~~~Gl~~~nPi~lAsG~~~~~~~i~~~~-~~G~G~vv~kTit~~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g 124 (367)
T d1d3ga_ 46 DSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLY-KMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHG 124 (367)
T ss_dssp CCGGGCEEETTEEESSSEEECTTSSTTSSSHHHHH-HHTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCC
T ss_pred CCCCCceEECCEecCCCcEeCcCCCCCHHHHHHHh-hcCCcEEeeccccccccccCCchhhhhhccccccccccCcCCcc
Confidence 34449999999999999999999876555555544 77999999999997664321 12234677888888886
Q ss_pred CCceeee---------cCCCCCCceEEEecCCC-----HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCCh
Q psy4398 89 DGSVVFR---------TCPREKNKIILQIGTAD-----PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTP 154 (306)
Q Consensus 89 ~~~~~~~---------~~~~~~~p~ivql~g~~-----~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~ 154 (306)
......+ .....+.|+++++.+.. .+++..+.+.+..++|.+|||++||+..... .....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~~~~~~~~~~~~~~~~~ad~lelNiScPn~~~~~------~~~~~ 198 (367)
T d1d3ga_ 125 LSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLR------SLQGK 198 (367)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEESCCTTSTTC----------CH
T ss_pred hHHHHHHHHHHhhhcccccccCceEEEEeccccccHHHHHHHHHHHHHhhhcccccccccccccccccc------ccccc
Confidence 5322111 11124569999998752 2455556666667999999999999953211 11222
Q ss_pred HHHH----HHHHH---HHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC-------------CCCCC-
Q psy4398 155 DIAC----NILTT---LISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA-------------ERPRH- 213 (306)
Q Consensus 155 ~~~~----eiv~~---v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-------------~~~~~- 213 (306)
.... .+++. ++....+|+++|++...+..+..++++.+.++|+++|++...+.. +.+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~ 278 (367)
T d1d3ga_ 199 AELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGK 278 (367)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEG
T ss_pred chhhhHHHHHHHhhhhcccccCCccccccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccc
Confidence 2222 22222 222346899999996556678999999999999999998654311 11122
Q ss_pred ---CCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhcccc-CCCC-CchHH--HHHHHHHhcCCCCCc
Q psy4398 214 ---RNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNH-YPVE-KLPKT--ILYAHCKYKRFEVPK 281 (306)
Q Consensus 214 ---p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGral-l~~p-~~~~~--~l~~~~~~~g~~~~~ 281 (306)
+..+.+++.+++.+ ++|||++|||.|.+|+.+.+.+|+ |+|+++ +.|| ...++ +|++||+++|
T Consensus 279 ~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~Gp~ii~~I~~~L~~~l~~~G----- 353 (367)
T d1d3ga_ 279 PLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQG----- 353 (367)
T ss_dssp GGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHHTT-----
T ss_pred cchhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHHHHHHcCCCHHHhhHHHHhcCcHHHHHHHHHHHHHHHHcC-----
Confidence 33578888998877 699999999999999999999865 999996 7899 55554 9999999999
Q ss_pred ceehhhccceeeEEEEcCc
Q psy4398 282 YETVQYEKLFRSLVTVNGK 300 (306)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~ 300 (306)
|+|+.+++|.
T Consensus 354 ---------~~si~dl~G~ 363 (367)
T d1d3ga_ 354 ---------FGGVTDAIGA 363 (367)
T ss_dssp ---------CSSHHHHTTG
T ss_pred ---------CCCHHHhcCh
Confidence 7777777764
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=99.95 E-value=2.8e-28 Score=227.91 Aligned_cols=243 Identities=12% Similarity=0.072 Sum_probs=170.8
Q ss_pred ccccccccccCCceEEccCCC-------CCCHHHHHHHHH-cCCCEEEecceechhhhhhhhhhhcccccccccCCCCCc
Q psy4398 20 ANANQANINYSNKIILAPMVR-------MNTLPFRLLALD-YGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~-------~t~~~~r~~~~~-~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (306)
.|++|++++|||||++|||.. +++...+.+.++ .|.|+++||.+.+.+.........++ .+...+.. ++
T Consensus 7 ~P~~ig~~~lkNRiv~~pm~~~~~~~G~p~~~~~~~y~~rA~Ggglii~~~~~V~~~~~~~~~~~~~-~~d~~i~~--~k 83 (380)
T d1q45a_ 7 SSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGSAGFPHVPGI-YSDEQVEA--WK 83 (380)
T ss_dssp SCEEETTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHTCCTTCEEEEEEEESSTTCCCSTTCCBC-SSHHHHHH--HH
T ss_pred CCccCCCEEecCCeEEcccCCCcCCCCCCCHHHHHHHHHHHhCCEEEEEcceEECCCcCCCCCCccc-CCHHHHHH--HH
Confidence 677999999999999999983 344444444333 24499999998765533222211122 22222221 55
Q ss_pred eeeecCCCCCCceEEEecCCC-----------------------------------------------------HHHHHH
Q psy4398 92 VVFRTCPREKNKIILQIGTAD-----------------------------------------------------PERALE 118 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~-----------------------------------------------------~~~~~~ 118 (306)
.+.+.+|++|.++++||++.+ .++|++
T Consensus 84 ~l~~~vh~~g~~~~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~ 163 (380)
T d1q45a_ 84 QVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVEDYCL 163 (380)
T ss_dssp HHHHHHHHTTCEEEEEEECCTTSCCGGGSGGGCCCEESSSCCCCTTTCCEECTTSCEECCCCCEECCGGGHHHHHHHHHH
T ss_pred HHHHHHHhcCcceEEEeeeCCccccccccccCCCCcccccCccccCCceeecCCccccCCCCCeeCCHHHHHHHHHHHHH
Confidence 677788888999999996411 267999
Q ss_pred HHHHHhc-CCCEEEEccC---------CCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccC-------C
Q psy4398 119 AAKKVEH-DVAAIDINMG---------CPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVF-------H 180 (306)
Q Consensus 119 aa~~~~~-g~d~veln~g---------cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g-------~ 180 (306)
+|+++++ |||+||||.+ +|..|.|+|+||++++||.+++.||+++||++++ ..+.++.... .
T Consensus 164 aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~~~~ 243 (380)
T d1q45a_ 164 SALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATD 243 (380)
T ss_dssp HHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCC
T ss_pred HHHHHHHhCcceeeeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeeccccccccc
Confidence 9999975 9999999975 7999999999999999999999999999999984 2344444421 1
Q ss_pred --ChHHHH------HHHHHHHHcCCcEEEEcccCCCC------CCCCCC--cHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q psy4398 181 --NEADTI------ALCKRLEACGIIAIGVHGRTKAE------RPRHRN--RIEMIRTLTQHLKIPVIANGGSKEIVDYG 244 (306)
Q Consensus 181 --~~~~~~------~~a~~l~~~G~d~i~v~~~~~~~------~~~~p~--~~~~v~~i~~~~~ipvia~GGI~s~~~~~ 244 (306)
..+... +....+...++++++++...... ....+. ...+++.+++.+++||+++||+ +++.++
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~-~~~~ae 322 (380)
T d1q45a_ 244 SDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF-NKELGM 322 (380)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSC-CHHHHH
T ss_pred ccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccCchhhhHHHHHHHhhccCCcEEeCCCC-CHHHHH
Confidence 111122 23344445789999987532111 111111 3456788899999999999997 699999
Q ss_pred HHHHh----hhhhccccCCCCCchHH
Q psy4398 245 GVFSL----NCAFLRNHYPVEKLPKT 266 (306)
Q Consensus 245 ~~l~~----~v~vGrall~~p~~~~~ 266 (306)
++++. ++.+||++++||.|+++
T Consensus 323 ~~l~~G~~DlV~~gR~liaDPdlv~K 348 (380)
T d1q45a_ 323 QAVQQGDADLVSYGRLFIANPDLVSR 348 (380)
T ss_dssp HHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred HHHHcCCccchhhhHHHHHCccHHHH
Confidence 99987 46999999999999876
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=7.6e-26 Score=207.95 Aligned_cols=241 Identities=17% Similarity=0.182 Sum_probs=174.6
Q ss_pred cccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhh-------hhhhhcccccccccCCCCCc
Q psy4398 19 MANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKT-------ERKVNDLLNTIDFVDPLDGS 91 (306)
Q Consensus 19 ~~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~ 91 (306)
.++++++|++|+|||++|++.+.+....+. ....|+|++++++++.++.... .+...+++|++++.|+|...
T Consensus 44 ~L~v~~~Gl~~~NPiglAsG~~~~~e~i~~-~~~~G~G~vv~ktit~~p~~gnp~pr~~~~~~~~~~iN~~gl~n~g~~~ 122 (336)
T d1f76a_ 44 AKPVNCMGLTFKNPLGLAAGLDKDGECIDA-LGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDN 122 (336)
T ss_dssp CCCEEETTEEESSSEEECTTSSTTCCCHHH-HHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHH
T ss_pred CCCeEECCeecCCCCEeCcccCCChHHHHH-HHhhcccccccccccccccCCCCCcccccccccccchhhccCccccHHH
Confidence 399999999999999999998766655554 4488999999999997765321 11235788999999987543
Q ss_pred eeeecC-CCCCCceEEEecCCC-------HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHH
Q psy4398 92 VVFRTC-PREKNKIILQIGTAD-------PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTT 163 (306)
Q Consensus 92 ~~~~~~-~~~~~p~ivql~g~~-------~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~ 163 (306)
...+.. ...+.|++++|.++. .+++..+.+.+..++|++|||++|||.. |.....+.+.+.+.+.+
T Consensus 123 ~~~~~~~~~~~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~~~ad~iElNiScPN~~------g~~~~~~~~~l~~~~~~ 196 (336)
T d1f76a_ 123 LVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTP------GLRTLQYGEALDDLLTA 196 (336)
T ss_dssp HHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSST------TGGGGGSHHHHHHHHHH
T ss_pred HHHHhhcccccceEEEEEeccCCcchHHHHHHHHHHHHHhhcccceeeecccchhhh------cccccccchhhccchhh
Confidence 322211 234568999997653 4566777777777999999999999942 22223344444433333
Q ss_pred H---------HhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC-------------CCCCCC----CCcH
Q psy4398 164 L---------ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK-------------AERPRH----RNRI 217 (306)
Q Consensus 164 v---------~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~-------------~~~~~~----p~~~ 217 (306)
+ +....+|+++|++...+.++..++++.+.+.|+++++...... .+++++ |..+
T Consensus 197 ~~~~~~~~~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al 276 (336)
T d1f76a_ 197 IKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKST 276 (336)
T ss_dssp HHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHH
T ss_pred hhhhhhhhhhhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHH
Confidence 2 3334789999999554556889999999999999999754321 111222 3357
Q ss_pred HHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhcccc-CCCCCchHH
Q psy4398 218 EMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNH-YPVEKLPKT 266 (306)
Q Consensus 218 ~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGral-l~~p~~~~~ 266 (306)
++++++++.+ ++|||++|||.|.+|+.+.+.+|+ |+|+++ +.||.+.+.
T Consensus 277 ~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~~Gp~ii~~ 331 (336)
T d1f76a_ 277 EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKE 331 (336)
T ss_dssp HHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHhcChHHHHH
Confidence 8889999988 799999999999999999998865 999997 779955443
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=1.2e-12 Score=117.03 Aligned_cols=234 Identities=15% Similarity=0.081 Sum_probs=135.3
Q ss_pred eeccc-ccccccccccCCceEEccCCCCCCHH------HHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCC
Q psy4398 15 YVLDM-ANANQANINYSNKIILAPMVRMNTLP------FRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDP 87 (306)
Q Consensus 15 ~~~~~-~~~~~~~l~l~n~i~lAPm~~~t~~~------~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (306)
++++. +++++.|.++++||++|||.+.+... +...+.+.|......+.... ... ......+.
T Consensus 20 d~~~vDlst~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~-~~~---~~~~~~~~------- 88 (310)
T d1vcfa1 20 ALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRIL-LER---PEALRSFR------- 88 (310)
T ss_dssp CGGGCCCCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHH-HHC---TTTHHHHC-------
T ss_pred CcccCcCCeEECCEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhc-chh---hhhhcccc-------
Confidence 34433 89999999999999999998655433 22334566765544432211 000 00000000
Q ss_pred CCCceeeecCCCCCCceEEEecCCCHHHH--HHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHH
Q psy4398 88 LDGSVVFRTCPREKNKIILQIGTADPERA--LEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTL 164 (306)
Q Consensus 88 ~~~~~~~~~~~~~~~p~ivql~g~~~~~~--~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v 164 (306)
+.+ .....++.+|+......++ ....+..+. +++++++|+.+|........ .......+....+
T Consensus 89 -----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 155 (310)
T d1vcfa1 89 -----VRK--VAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGD------TDFRGLVERLAEL 155 (310)
T ss_dssp -----CTT--TCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSC------CCCTTHHHHHHHH
T ss_pred -----hHH--hcCCcceeeeecccchhhhhHHHHHHHHHhcCCCeeccccccchhhhcccc------cccccHHHHHHHH
Confidence 000 0124567778765433221 222233333 78999999988764322211 1111223333332
Q ss_pred HhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC---------C---------CCCCCCcHHHHHHHHhh
Q psy4398 165 ISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA---------E---------RPRHRNRIEMIRTLTQH 226 (306)
Q Consensus 165 ~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~---------~---------~~~~p~~~~~v~~i~~~ 226 (306)
.....|+.+|...+.. ..+.++.+.++|+|+|.+++.... + ...+....+.+.++++.
T Consensus 156 -~~~~~p~~~k~v~~~~---~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~ 231 (310)
T d1vcfa1 156 -LPLPFPVMVKEVGHGL---SREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREV 231 (310)
T ss_dssp -CSCSSCEEEECSSSCC---CHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHH
T ss_pred -hhccCCceeeeecCcc---cHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhh
Confidence 3458899999874322 256677888999999998653210 0 00112234556666666
Q ss_pred C-CCcEEEecCCCCHHHHHHHHHhhh---hhccccCC----CCC----c-hH--HHHHHHHHhcC
Q psy4398 227 L-KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP----VEK----L-PK--TILYAHCKYKR 276 (306)
Q Consensus 227 ~-~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~----~p~----~-~~--~~l~~~~~~~g 276 (306)
. ++|||+.|||++..|+-+++..|+ ++||+++. ++. . .. .+|+.+|...|
T Consensus 232 ~~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~El~~~m~~~G 296 (310)
T d1vcfa1 232 LPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALEGAERVAAWIGDYLEELRTALFAIG 296 (310)
T ss_dssp CSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5 799999999999999999998765 99999863 331 1 11 29999999999
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.20 E-value=2.1e-10 Score=103.32 Aligned_cols=230 Identities=17% Similarity=0.188 Sum_probs=132.4
Q ss_pred ccccccccccCCceEEccCCCCCCH-------HHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCce
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTL-------PFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSV 92 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~-------~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (306)
+++++.|.++++||+.|||.+.+.. .+...+.+.|......+..+... ........... ...+
T Consensus 25 lst~i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~------ 94 (329)
T d1p0ka_ 25 ISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALK-DPSERLSYEIV---RKEN------ 94 (329)
T ss_dssp CCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTT-CHHHHHHHHHH---HHHC------
T ss_pred CCEEECCEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccch-hHHHHhhhhhH---hhhC------
Confidence 8899999999999999999765532 12333456675555444322111 00000000000 0000
Q ss_pred eeecCCCCCCceEEEecCC-CHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc
Q psy4398 93 VFRTCPREKNKIILQIGTA-DPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI 170 (306)
Q Consensus 93 ~~~~~~~~~~p~ivql~g~-~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~ 170 (306)
...+.+.++... ..+.. .+.++ .|++++.+|..||+......+. .+.....+.++.+++.++.
T Consensus 95 -------~~~~~~~~~~~~~~~~~~---~~~~~~~g~~ai~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~i~~~~~~ 159 (329)
T d1p0ka_ 95 -------PNGLIFANLGSEATAAQA---KEAVEMIGANALQIHLNVIQEIVMPEGD-----RSFSGALKRIEQICSRVSV 159 (329)
T ss_dssp -------SSSCEEEEEETTCCHHHH---HHHHHHTTCSEEEEEECTTTTC-------------CTTHHHHHHHHHHHCSS
T ss_pred -------CcceEEEeeccchhHHHH---HHHHHHcCCCEEEecccccchhhhcccc-----ccccchHHHHHHHHHHcCC
Confidence 112344444333 23322 33444 3899999999999854332211 2233455677888888899
Q ss_pred cEEEEecc-CCChHHHHHHHHHHHHcCCcEEEEcccCCCC----------C------CCCCCcHHHHHHHHhhC-CCcEE
Q psy4398 171 PVSCKIRV-FHNEADTIALCKRLEACGIIAIGVHGRTKAE----------R------PRHRNRIEMIRTLTQHL-KIPVI 232 (306)
Q Consensus 171 pv~vKir~-g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~----------~------~~~p~~~~~v~~i~~~~-~ipvi 232 (306)
|+.+|.-. +.+ .+.++.+.++|+|+|.+.+....+ . ..+....+.+.++.+.. ++|||
T Consensus 160 ~vivk~v~~~~~----~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~vi 235 (329)
T d1p0ka_ 160 PVIVKEVGFGMS----KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMI 235 (329)
T ss_dssp CEEEEEESSCCC----HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEE
T ss_pred CcEEEecCCcch----HHHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEE
Confidence 99998753 223 344556678999999986431100 0 01223455566666665 79999
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccCCC-----C-CchH------HHHHHHHHhcCCC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHYPV-----E-KLPK------TILYAHCKYKRFE 278 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall~~-----p-~~~~------~~l~~~~~~~g~~ 278 (306)
+.|||++..|+-+++..|+ ++||+++.. + -..+ .+|+.-|...|.+
T Consensus 236 adGGIr~g~Dv~KAlalGAdaV~iGr~~l~al~~~G~~gv~~~l~~l~~el~~~m~~~G~~ 296 (329)
T d1p0ka_ 236 ASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGAR 296 (329)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EcCCcccHHHHHHHHHcCCCchhccHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999998764 889976531 1 1111 1777777777744
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.14 E-value=1.9e-10 Score=100.02 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=122.3
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccEEEEecc------
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCKIRV------ 178 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vKir~------ 178 (306)
+|++|. ...+.++-+.+..|++.|-+| +...++++++.++.+.+. +.+-..+++|...
T Consensus 79 i~~gGG-Ir~~e~~~~ll~~G~~kVii~--------------s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~ 143 (252)
T d1h5ya_ 79 VLVGGG-VRSLEDATTLFRAGADKVSVN--------------TAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVY 143 (252)
T ss_dssp EEEESS-CCSHHHHHHHHHHTCSEEEES--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEE
T ss_pred ceeecc-cchhhhhhhHhhcCCcEEEec--------------ccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEE
Confidence 566443 223344445566799999885 455678999999999995 4466777777442
Q ss_pred --CCChH---HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---
Q psy4398 179 --FHNEA---DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN--- 250 (306)
Q Consensus 179 --g~~~~---~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~--- 250 (306)
+|... +..++++.+++.|+..+.++...+++...++ ++++++.+++.+++|++++|||++.+|.+++.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G~-d~~~~~~i~~~~~~pii~~GGv~~~~di~~l~~~g~~g 222 (252)
T d1h5ya_ 144 VKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGY-DVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADA 222 (252)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCC-CHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred EeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccCCc-CHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCE
Confidence 34322 4778999999999999999999999999886 99999999999999999999999999999988764
Q ss_pred hhhccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 251 CAFLRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 251 v~vGrall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
+.+|++++.+- ..-.++++||.++|+++
T Consensus 223 v~~gs~l~~~~-~~~~~lk~~l~~~~i~v 250 (252)
T d1h5ya_ 223 VLAASLFHFRV-LSIAQVKRYLKERGVEV 250 (252)
T ss_dssp EEESHHHHTTS-SCHHHHHHHHHHTTCBC
T ss_pred EEEhhHHHcCC-CCHHHHHHHHHHcCCcc
Confidence 58888887543 22236899999999864
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=99.14 E-value=2.4e-10 Score=99.32 Aligned_cols=159 Identities=15% Similarity=0.173 Sum_probs=123.0
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh-cccccEEEEecc----
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS-NLSIPVSCKIRV---- 178 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~-~~~~pv~vKir~---- 178 (306)
+=+|++|. .....++-+.+..|++.|-++ +...++++++.++.+.+.. .+...+.+|...
T Consensus 75 ~pi~vgGG-Irs~e~~~~ll~~Ga~kVii~--------------s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~ 139 (251)
T d1ka9f_ 75 IPLTVGGG-VRSLEDARKLLLSGADKVSVN--------------SAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPE 139 (251)
T ss_dssp SCEEEESS-CCSHHHHHHHHHHTCSEEEEC--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEE
T ss_pred cchheecc-ccCHHHHHHHHHcCCCEEEEC--------------chhhhCHHHHHHHHHhhcccccccccchhhcccceE
Confidence 34566543 233344455667799999984 4567899999999999954 344455565442
Q ss_pred ----CCChH---HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh-
Q psy4398 179 ----FHNEA---DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN- 250 (306)
Q Consensus 179 ----g~~~~---~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~- 250 (306)
+|... +..++++.+++.|+..+.++...+++...++ ++++++.+.+..++|+|++||+.+.+|..++.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~-d~~l~~~i~~~~~~pii~~GGv~~~~dl~~l~~~g~ 218 (251)
T d1ka9f_ 140 VHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGY-DLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGA 218 (251)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCC-CHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTC
T ss_pred EEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCCc-chhHHHHHHhhcceeEEEecCCCCHHHHHHHHHCCC
Confidence 34322 4789999999999999999999999999986 89999999999999999999999999999999874
Q ss_pred --hhhccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 251 --CAFLRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 251 --v~vGrall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
+.+|++++.+.. .-.++++++.++|+++
T Consensus 219 ~gviig~al~~g~~-~~~~~k~~l~~~~i~v 248 (251)
T d1ka9f_ 219 EAALAASVFHFGEI-PIPKLKRYLAEKGVHV 248 (251)
T ss_dssp SEEEESHHHHTTSS-CHHHHHHHHHHTTCCB
T ss_pred CEEEEhHHHHcCCC-CHHHHHHHHHHCCCcc
Confidence 488999886542 2236899999999873
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=3.4e-10 Score=98.43 Aligned_cols=156 Identities=16% Similarity=0.123 Sum_probs=121.6
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHH-hcccccEEEEecc------
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCKIRV------ 178 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vKir~------ 178 (306)
+|++| ......++.+.+..|++.|-|+ +...++|+++.++.+.+. +.+-..+.++...
T Consensus 77 i~vgG-GIr~~e~i~~~l~~Ga~kviig--------------s~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~ 141 (253)
T d1thfd_ 77 FTVGG-GIHDFETASELILRGADKVSIN--------------TAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVF 141 (253)
T ss_dssp EEEES-SCCSHHHHHHHHHTTCSEEEES--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEE
T ss_pred ceeec-ccccchhhhhHHhcCCCEEEEC--------------hHHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeee
Confidence 66644 3345555556677899999994 566789999999999994 4444445544221
Q ss_pred --CCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---
Q psy4398 179 --FHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN--- 250 (306)
Q Consensus 179 --g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~--- 250 (306)
+|.. .+..++++.+++.|+..+.++...+++...++ +++++..+++..++|+|++||+++.+|..++.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~-d~~ll~~i~~~~~~pvi~~GGv~s~~di~~l~~~g~~g 220 (253)
T d1thfd_ 142 TYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY-DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADA 220 (253)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCC-CHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred eeecccccchhHHHHHHHHHhccCCEEEEEEecccCccCCc-cccccccccccccceEEEecCCCCHHHHHHHHHCCCCE
Confidence 2322 24789999999999999999999999999886 99999999999999999999999999999998874
Q ss_pred hhhccccCCCCCchHHHHHHHHHhcCCC
Q psy4398 251 CAFLRNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 251 v~vGrall~~p~~~~~~l~~~~~~~g~~ 278 (306)
+.+|++++.+-.. -.+++++|.+.|++
T Consensus 221 vivgsal~~~~~~-~~~~k~~l~~~~i~ 247 (253)
T d1thfd_ 221 ALAASVFHFREID-VRELKEYLKKHGVN 247 (253)
T ss_dssp EEESHHHHTTCSC-HHHHHHHHHHTTCC
T ss_pred EEEchHHHcCCCC-HHHHHHHHHHCCCc
Confidence 4899999865422 23678999999976
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=99.12 E-value=2.9e-10 Score=101.78 Aligned_cols=158 Identities=16% Similarity=0.051 Sum_probs=118.5
Q ss_pred HHHHHHHHhcCCCEEEEccCC---CccccccCCccccccCChHHHHHHHHHHH-hcccccEEEEecc-------------
Q psy4398 116 ALEAAKKVEHDVAAIDINMGC---PKQFSLTGGMGAALLSTPDIACNILTTLI-SNLSIPVSCKIRV------------- 178 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gc---P~~~~~~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vKir~------------- 178 (306)
+.+|.+.+..|+|-|-||-.. |.. .. . =....++|.++.++++.+- +.+.+.+.+|-..
T Consensus 118 ~e~A~~ll~~GadKVvI~T~ai~~p~~--~~-e-~~~~~~n~~li~~i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~ 193 (323)
T d1jvna1 118 LEVASLYFRSGADKVSIGTDAVYAAEK--YY-E-LGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFE 193 (323)
T ss_dssp HHHHHHHHHHTCSEEEECHHHHHHHHH--HH-H-TTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEE
T ss_pred hHHHHHHHHcCCCeEEechHHhhChHH--HH-H-HHhhcccchhHHHHHHHhCCceEEEEEEEEeccccccccccccccc
Confidence 566777778899999997321 110 00 0 0012357778888888884 4456666666321
Q ss_pred -------------------CCCh---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 179 -------------------FHNE---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 179 -------------------g~~~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
||.. -+..++++.+++.|+..|.++...+++...|+ +++++.++++.+++|||++||
T Consensus 194 ~~~~~~~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIlltdIdrDGt~~G~-D~el~~~i~~~~~iPiIasGG 272 (323)
T d1jvna1 194 TEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGY-DLELIEHVKDAVKIPVIASSG 272 (323)
T ss_dssp CSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSCC-CHHHHHHHHHHCSSCEEECSC
T ss_pred cccccCCCccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEEeeccccccccc-chhHHHHHHHhCCCCEEEECC
Confidence 2221 14899999999999999999999999999986 999999999999999999999
Q ss_pred CCCHHHHHHHHHh----hhhhccccCCCCCchHHHHHHHHHhcCCCC
Q psy4398 237 SKEIVDYGGVFSL----NCAFLRNHYPVEKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 237 I~s~~~~~~~l~~----~v~vGrall~~p~~~~~~l~~~~~~~g~~~ 279 (306)
+.+.++..++++. ++.+|++++.+-. .-.+++++|.++|+++
T Consensus 273 i~s~~di~~ll~~~~v~gv~~gs~~~~~~~-si~elK~~L~~~~i~v 318 (323)
T d1jvna1 273 AGVPEHFEEAFLKTRADACLGAGMFHRGEF-TVNDVKEYLLEHGLKV 318 (323)
T ss_dssp CCSHHHHHHHHHHSCCSEEEESHHHHTTSC-CHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHhCCCeEEEEhhHHHcCCC-CHHHHHHHHHHCCCcc
Confidence 9999999998864 4689999875432 2236899999999884
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=1.5e-09 Score=97.63 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=125.7
Q ss_pred cccccc-ccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCC
Q psy4398 20 ANANQA-NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCP 98 (306)
Q Consensus 20 ~~~~~~-~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (306)
+++++. .+.++-||+.|||-.+++..+.....+.|.-.++....+++........ ++
T Consensus 26 l~t~lt~~l~~~iPIIaa~MdtV~~~~mA~als~~GGlGvi~r~~~~e~~~~~i~~----------------------vk 83 (330)
T d1vrda1 26 IDTRLTRQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQARQVSI----------------------VK 83 (330)
T ss_dssp CCEESSSSCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSCHHHHHHHHHH----------------------HH
T ss_pred EEEEEecCcccCCCEEeCCCCCcCCHHHHHHHHHCCCeEEeecccchhhhHHHHHH----------------------Hh
Confidence 566775 6789999999999999999998876566643334443333332211111 01
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEec
Q psy4398 99 REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIR 177 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir 177 (306)
+...++.+.+ +.+++.+..+...+++|+|.+-+..+..+ ++...+.++.+++.. +.|+.+.--
T Consensus 84 ~~~~~v~~~v-gv~~~~~e~~~~li~agvd~ivId~A~G~---------------~~~~~~~ik~ik~~~~~~~viaGnV 147 (330)
T d1vrda1 84 KTRLLVGAAV-GTSPETMERVEKLVKAGVDVIVIDTAHGH---------------SRRVIETLEMIKADYPDLPVVAGNV 147 (330)
T ss_dssp TCCBCCEEEE-CSSTTHHHHHHHHHHTTCSEEEECCSCCS---------------SHHHHHHHHHHHHHCTTSCEEEEEE
T ss_pred hhccEEEEEE-ecCHHHHHHHHHHHHCCCCEEEEecCCCC---------------chhHHHHHHHHHHhCCCCCEEeech
Confidence 1122344555 44455665555566779999888655422 345566778887654 678877655
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccC------CCCCCCCCCcHH---HHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRT------KAERPRHRNRIE---MIRTLTQHLKIPVIANGGSKEIVDYGGVFS 248 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~------~~~~~~~p~~~~---~v~~i~~~~~ipvia~GGI~s~~~~~~~l~ 248 (306)
. +.+.++.|.++|+|+|.+--.. +...-.+-+.+. .+.++++.+++|||+.|||.+..++-+++.
T Consensus 148 --~----t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAla 221 (330)
T d1vrda1 148 --A----TPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALA 221 (330)
T ss_dssp --C----SHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHH
T ss_pred --h----HHHHHHHHHHcCCCEEeeccccCccccccceeccccccchhHHHHHHHHHhcCceEEecCCcccCCchheeee
Confidence 2 3566788889999999882111 100011222333 345556677899999999999999999998
Q ss_pred hh---hhhccccCC
Q psy4398 249 LN---CAFLRNHYP 259 (306)
Q Consensus 249 ~~---v~vGrall~ 259 (306)
.| ||+|+.+..
T Consensus 222 ~GAd~Vm~Gs~fa~ 235 (330)
T d1vrda1 222 AGAESVMVGSIFAG 235 (330)
T ss_dssp TTCSEEEESHHHHT
T ss_pred ccCceeeecchhee
Confidence 75 488887643
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.02 E-value=1.1e-08 Score=93.49 Aligned_cols=207 Identities=13% Similarity=0.115 Sum_probs=125.1
Q ss_pred ccccc-cccccCCceEEccCCCCCCHHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecC
Q psy4398 20 ANANQ-ANINYSNKIILAPMVRMNTLPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97 (306)
Q Consensus 20 ~~~~~-~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 97 (306)
+++++ ..+.++-||+.|||-.+++..+.....+.| .|.+- ...+++......+......+. | .....
T Consensus 35 l~t~lt~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLh-r~~~~e~~~~ev~~v~~~~~~-----p-----~~~~~ 103 (378)
T d1jr1a1 35 LTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIH-HNCTPEFQANEVRKVKKYEQY-----P-----LASKD 103 (378)
T ss_dssp CCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEEC-CSSCHHHHHHHHHHHHTSCCC-----T-----TCCBC
T ss_pred eeeEEECCccCCCCEEECCCCCcCCHHHHHHHHHCCCeeEEc-CCCCHHHHHHHHheehhhhhC-----c-----ccccc
Confidence 55555 667899999999999999999887654554 45553 333443332221111111000 0 00000
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEe
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKI 176 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 176 (306)
.+....+.+.+ +...++...+...+++|+|.+.++...++ .+.+.+.++.+++.. +.|+.+--
T Consensus 104 ~~~~l~v~aav-g~~~~~~~~~~~l~~agv~vi~id~a~g~---------------~~~~~~~i~~ik~~~~~~~iIaGn 167 (378)
T d1jr1a1 104 AKKQLLCGAAI-GTHEDDKYRLDLLALAGVDVVVLDSSQGN---------------SIFQINMIKYMKEKYPNLQVIGGN 167 (378)
T ss_dssp TTSCBCCEEEE-CSSTHHHHHHHHHHHHTCCEEEECCSSCC---------------SHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred cccCEEEEEEe-ccCHHHHHHHHHHHhhccceEeeeccCcc---------------chhhHHHHHHHHHHCCCCceeecc
Confidence 01122344555 33344444444455679999999877654 244566777777655 56665544
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCC------CCCCCCcHHH---HHHHHhhCCCcEEEecCCCCHHHHHHHH
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAE------RPRHRNRIEM---IRTLTQHLKIPVIANGGSKEIVDYGGVF 247 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~------~~~~p~~~~~---v~~i~~~~~ipvia~GGI~s~~~~~~~l 247 (306)
- - +.+.++.|.++|+|+|.+....... .-.+-+.+.. +.++++.+++||||-|||.+.-|+-+++
T Consensus 168 V--a----T~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAl 241 (378)
T d1jr1a1 168 V--V----TAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKAL 241 (378)
T ss_dssp E--C----SHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH
T ss_pred c--c----cHHHHHHHHHhCCCEEeeccccccccccccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEE
Confidence 3 1 3566788889999999885432111 0112224433 4555666789999999999999999999
Q ss_pred Hhh---hhhccccCC
Q psy4398 248 SLN---CAFLRNHYP 259 (306)
Q Consensus 248 ~~~---v~vGrall~ 259 (306)
..| ||+|+.+-.
T Consensus 242 a~GAd~VMmGs~fAg 256 (378)
T d1jr1a1 242 ALGASTVMMGSLLAA 256 (378)
T ss_dssp HTTCSEEEESTTTTT
T ss_pred Eeecceeeecceeee
Confidence 875 499998753
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=1.4e-09 Score=98.79 Aligned_cols=210 Identities=14% Similarity=0.068 Sum_probs=132.3
Q ss_pred ccccccccccCCceEEccCCCCCC------HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRMNT------LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~------~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++.|.++..||+++||++.+. ......+++.|....+....+... +. +
T Consensus 59 lst~~lG~~l~~P~~Iapmtgg~~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~--e~---------------------v 115 (349)
T d1tb3a1 59 TRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSL--ED---------------------I 115 (349)
T ss_dssp CCEEETTEEESSSEEECCCSCGGGTCTTTHHHHHHHHHHHTCCEEECTTCSSCH--HH---------------------H
T ss_pred CceeECCcCccceEEEcchhcccccccchhhHHHHhhhhcccceeecccccccc--hh---------------------h
Confidence 899999999999999999996432 224445677887776665432110 00 0
Q ss_pred eecCCCCCCceEEEecCC-CHHHHHHHHHHHhc-CCCEEEEccCCCcccccc---------------CCc----------
Q psy4398 94 FRTCPREKNKIILQIGTA-DPERALEAAKKVEH-DVAAIDINMGCPKQFSLT---------------GGM---------- 146 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g~-~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~---------------~~~---------- 146 (306)
.... .+.+...|+... +.+...+..++++. |+.++-+....|..-.+. ...
T Consensus 116 ~~~~--~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
T d1tb3a1 116 VAAA--PEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQ 193 (349)
T ss_dssp HHHS--TTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-----
T ss_pred hhhc--cCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhccccc
Confidence 0001 134667777543 33444555566654 888887765543210000 000
Q ss_pred -cccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHh
Q psy4398 147 -GAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQ 225 (306)
Q Consensus 147 -G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~ 225 (306)
......++.+.-+-++.+++.++.|+.+|-- .+. +-+..+.++|+|++.+++-...+....+...+.+.++++
T Consensus 194 ~~~~~~~~~~~~~~~i~~l~~~~~~pii~Kgi--~~~----~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~ 267 (349)
T d1tb3a1 194 SVPVSFPKASFCWNDLSLLQSITRLPIILKGI--LTK----EDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVA 267 (349)
T ss_dssp --------CCCCHHHHHHHHTTCCSCEEEEEE--CSH----HHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHhcCCCcccchh--hhh----HHHHHHHHhhccceeeeccccccccccccchhhcceeee
Confidence 0000011112235677888889999999966 332 445666789999999965432223334557788888888
Q ss_pred hC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 226 HL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 226 ~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
.+ ++|||+.|||++..|+-+++..|+ .+||+++..
T Consensus 268 ~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~~ 307 (349)
T d1tb3a1 268 AVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWG 307 (349)
T ss_dssp HHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHH
T ss_pred ccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHHH
Confidence 87 689999999999999999998765 899988753
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.94 E-value=1.8e-09 Score=92.87 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=104.5
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc----C
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV----F 179 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~----g 179 (306)
+=+|++|. .....++.+.+..|++.|-+| +...++++++.++.+.+.+.+-+.+.+|-.. |
T Consensus 75 ~pi~vGGG-Irs~~~~~~ll~~Ga~kVvi~--------------s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g 139 (239)
T d1vzwa1 75 IKVELSGG-IRDDDTLAAALATGCTRVNLG--------------TAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRG 139 (239)
T ss_dssp SEEEEESS-CCSHHHHHHHHHTTCSEEEEC--------------HHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSS
T ss_pred cceEeecc-cccchhhhhhhccccccchhh--------------HHhhhccccchhhhccCCceeeeeeccceeeecCcc
Confidence 34677543 334455556677899999985 4566789999999999987765555554332 3
Q ss_pred CC--hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh------hh
Q psy4398 180 HN--EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL------NC 251 (306)
Q Consensus 180 ~~--~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~------~v 251 (306)
|. ..+..+..+.+.+.|+..+.++...+++...+| +++++..+++..++|++++|||+|++|.+++.+. ++
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~G~-d~~l~~~i~~~~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gv 218 (239)
T d1vzwa1 140 WTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGP-NLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGA 218 (239)
T ss_dssp SCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CC-CHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEE
T ss_pred ceeeccccchhhhhhhhccccEEEEEeecccceecCC-cchhhhhhhhccCceEEEECCCCCHHHHHHHHhhhhCCccEe
Confidence 32 224677888999999999999999999999986 9999999999999999999999999999988542 45
Q ss_pred hhccccCCCC
Q psy4398 252 AFLRNHYPVE 261 (306)
Q Consensus 252 ~vGrall~~p 261 (306)
.+|+|+|.+-
T Consensus 219 ivg~al~~g~ 228 (239)
T d1vzwa1 219 IVGKALYAKA 228 (239)
T ss_dssp EECHHHHTTS
T ss_pred eEhHHHHCCC
Confidence 8999998775
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.88 E-value=1.1e-08 Score=92.64 Aligned_cols=212 Identities=15% Similarity=0.048 Sum_probs=130.8
Q ss_pred ccc-ccccccccccCCceEEccCCCCCC------HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCC
Q psy4398 17 LDM-ANANQANINYSNKIILAPMVRMNT------LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD 89 (306)
Q Consensus 17 ~~~-~~~~~~~l~l~n~i~lAPm~~~t~------~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (306)
++. +++++.|.+++.||+.+||++.+. ......+.+.|....+..+.+.. ......
T Consensus 55 ~~idlst~~lGk~ls~Pi~Iapmtgg~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~~-~~e~~~---------------- 117 (353)
T d1p4ca_ 55 SRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMS-IEDLAR---------------- 117 (353)
T ss_dssp SSCBCCEEETTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTTCSSC-HHHHHH----------------
T ss_pred CCCCCceEECCcCccCceeeccccccccccchhhHHHHHHHHHhhcccccccccccc-chhHHH----------------
Confidence 344 899999999999999999996542 22444456778777665432211 000000
Q ss_pred CceeeecCCCCCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCcccccc-------------------------
Q psy4398 90 GSVVFRTCPREKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLT------------------------- 143 (306)
Q Consensus 90 ~~~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~------------------------- 143 (306)
........|....+........+.++. |++.+.++...|..-.+.
T Consensus 118 ---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~vd~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 188 (353)
T d1p4ca_ 118 ---------QCDGDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGK 188 (353)
T ss_dssp ---------HCCSCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSC
T ss_pred ---------hcCCceeeeeccccHHHHHHhHHHHHHcCCcceeeeccccccCcchhhhhhhhcccchhhhhhhhhhcccc
Confidence 012244555555555444445555553 889888876544210000
Q ss_pred ---CC--ccccc---cCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q psy4398 144 ---GG--MGAAL---LSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN 215 (306)
Q Consensus 144 ---~~--~G~~l---~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~ 215 (306)
.. ..... +-++....+-++.+++..+.|+.+|-- .+ .+-+..+.+.|++.+.++.-........+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~i~~kgv--~~----~~~~~~a~~~g~~~~~~s~~gg~~~~~~~~ 262 (353)
T d1p4ca_ 189 MDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGL--LS----AEDADRCIAEGADGVILSNHGGRQLDCAIS 262 (353)
T ss_dssp CSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEE--CC----HHHHHHHHHTTCSEEEECCGGGTSCTTCCC
T ss_pred ccccccchhHHHHHhccCCCCCHHHHHHHHhccccchhhhcc--hh----hhhHHHHHhcCCchhhhccccccccccccc
Confidence 00 00000 011223445677778878889988877 33 334556677999999886432222233355
Q ss_pred cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 216 RIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 216 ~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
.++.+.+++...++|||+.|||++.-|+-+++..|+ .+||+++..
T Consensus 263 ~~~~l~~i~~~~~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~~ 310 (353)
T d1p4ca_ 263 PMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYG 310 (353)
T ss_dssp GGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHH
T ss_pred chhcccchhcccccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHHH
Confidence 667777888888999999999999999999998765 889987743
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=98.81 E-value=2e-09 Score=92.79 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=106.8
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc----CCC
Q psy4398 106 LQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV----FHN 181 (306)
Q Consensus 106 vql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~----g~~ 181 (306)
+|++|. .....++.+.++.|+|.|-+| +.+.+++.++.++.+ +...+.+.+++|-.. +|.
T Consensus 76 l~~gGG-I~s~~~~~~~~~~Ga~kVvi~--------------s~~~~~~~~~~~~~~-~~~~~~v~iD~~~~~~~~~g~~ 139 (241)
T d1qo2a_ 76 IQIGGG-IRSLDYAEKLRKLGYRRQIVS--------------SKVLEDPSFLKSLRE-IDVEPVFSLDTRGGRVAFKGWL 139 (241)
T ss_dssp EEEESS-CCSHHHHHHHHHTTCCEEEEC--------------HHHHHCTTHHHHHHT-TTCEEEEEEEEETTEECCTTCS
T ss_pred hhhhhh-hhhhhhhhhccccccceEecC--------------cccccCchhhhhhcc-cccceeeecccccccccccCcc
Confidence 577554 234445556667899999886 344556666555332 222223344444221 332
Q ss_pred h---HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh--------
Q psy4398 182 E---ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN-------- 250 (306)
Q Consensus 182 ~---~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~-------- 250 (306)
. -+..++++.+++.|+..+.++...+++...++ +++.++.+++..++|+|++|||.+.+|.+++.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G~-d~~l~~~i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~ 218 (241)
T d1qo2a_ 140 AEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLK 218 (241)
T ss_dssp SCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEE
T ss_pred cceeeehhHHHHHhhccccceEEEeehhhhhhcccc-chhhhhhhhccCCceEEEECCCCCHHHHHHHHHccccccCCEe
Confidence 2 24789999999999999999999988888886 99999999999999999999999999999998743
Q ss_pred -hhhccccCCCCCchHHHHHHHHH
Q psy4398 251 -CAFLRNHYPVEKLPKTILYAHCK 273 (306)
Q Consensus 251 -v~vGrall~~p~~~~~~l~~~~~ 273 (306)
+.+|+++|.+-. .-.++++||+
T Consensus 219 gvivG~al~~g~l-~~~~~k~~l~ 241 (241)
T d1qo2a_ 219 GVIVGRAFLEGIL-TVEVMKRYAR 241 (241)
T ss_dssp EEEECHHHHTTSS-CHHHHHHHHC
T ss_pred eEEEHHHHHCCCC-CHHHHHHHhC
Confidence 589999987652 2225677763
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.81 E-value=6.8e-08 Score=87.63 Aligned_cols=209 Identities=15% Similarity=0.107 Sum_probs=130.5
Q ss_pred ccccccccccCCceEEccCCCCC----C--HHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCcee
Q psy4398 20 ANANQANINYSNKIILAPMVRMN----T--LPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVV 93 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t----~--~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (306)
+++++-|.+++.||+.+||++.+ + ......+.+.|....+.-+.... .. . .
T Consensus 60 lst~~lG~~~~~P~~IspMtgg~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s-~~----~------------------~ 116 (359)
T d1goxa_ 60 MTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSS-VE----E------------------V 116 (359)
T ss_dssp CCEEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSC-HH----H------------------H
T ss_pred CceeECCcccCCceeeccccccccCCCchHHHhhhhHHhhCCccccccccccc-ch----h------------------h
Confidence 88999999999999999999632 1 22444466778777666543211 00 0 0
Q ss_pred eecCCCCCCceEEEecCC-CHHHHHHHHHHHh-cCCCEEEEccCCCcccccc----CCcc-----------ccccC----
Q psy4398 94 FRTCPREKNKIILQIGTA-DPERALEAAKKVE-HDVAAIDINMGCPKQFSLT----GGMG-----------AALLS---- 152 (306)
Q Consensus 94 ~~~~~~~~~p~ivql~g~-~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~----~~~G-----------~~l~~---- 152 (306)
. ...+.+...|+... +.+......+++. .+++.+.++...|....+. .++. .....
T Consensus 117 ~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (359)
T d1goxa_ 117 A---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDK 193 (359)
T ss_dssp H---TTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC----
T ss_pred H---HhcCCCcccccccchhHHHHHHHHHHHHHhhcccccccccchhhhhhhhhccccccCCcccchhhhhhhccccCcc
Confidence 0 01234677787654 3444455556665 4899988877644321100 0000 00000
Q ss_pred --------------ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHH
Q psy4398 153 --------------TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIE 218 (306)
Q Consensus 153 --------------~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~ 218 (306)
++....+-++.+++..+.|+.+|--. . .+-+..+.+.|++.+.++.-...+....+...+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~--~----~~da~~a~~~g~~~~~vsnhggr~ld~~~~~~~ 267 (359)
T d1goxa_ 194 ANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVI--T----AEDARLAVQHGAAGIIVSNHGARQLDYVPATIM 267 (359)
T ss_dssp -----HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCC--S----HHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHH
T ss_pred cccccHHHHHHhhcCCCCCHHHHHHHHhhcccceeeeccc--c----hHHHHHHHHccccceecccccccccccccchhh
Confidence 00111233677777778888888773 2 344455678999999986433333334455778
Q ss_pred HHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 219 MIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 219 ~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
.+..+++.+ ++|||+.|||++..|+-+++..|+ .+||+++..
T Consensus 268 ~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~ 314 (359)
T d1goxa_ 268 ALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFS 314 (359)
T ss_dssp HHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred hchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 888888887 699999999999999999998765 889987754
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.78 E-value=1e-07 Score=86.50 Aligned_cols=196 Identities=13% Similarity=0.082 Sum_probs=121.2
Q ss_pred cccccc-ccccCCceEEccCCCCCCHHHHHHHHHcC-CCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecC
Q psy4398 20 ANANQA-NINYSNKIILAPMVRMNTLPFRLLALDYG-ADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTC 97 (306)
Q Consensus 20 ~~~~~~-~l~l~n~i~lAPm~~~t~~~~r~~~~~~G-~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 97 (306)
++.++. .+.+.-||+.|||-.+++..+.....+.| .|.+--. ...+............
T Consensus 33 l~~~it~~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~-~~~~e~~~~~~~~~~~------------------- 92 (365)
T d1zfja1 33 LKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKN-MSITEQAEEVRKVKRS------------------- 92 (365)
T ss_dssp CCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCS-SCHHHHHHHHHHHHHH-------------------
T ss_pred eeEEeeCCcccCCCEEECCCCCcCCHHHHHHHHHCCCceEEcCc-cCHHHHHHHhhhhhhc-------------------
Confidence 667775 68999999999999999999887654555 4554322 2222111111100000
Q ss_pred CCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEe
Q psy4398 98 PREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKI 176 (306)
Q Consensus 98 ~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 176 (306)
.....+.+.+ |.+++.+..+...+++|+|.|-|..... ......+.++.+|+.. +.|+.+--
T Consensus 93 -~~~~~v~aav-Gv~~~~~er~~~l~~agvd~ivID~A~G---------------~s~~~~~~i~~ik~~~~~~~iIaGN 155 (365)
T d1zfja1 93 -EGRLLVAAAV-GVTSDTFERAEALFEAGADAIVIDTAHG---------------HSAGVLRKIAEIRAHFPNRTLIAGN 155 (365)
T ss_dssp -TSCBCCEEEE-CSSTTHHHHHHHHHHHTCSEEEECCSCT---------------TCHHHHHHHHHHHHHCSSSCEEEEE
T ss_pred -cCceEEEEEe-ccCchHHHHHHHHHHcCCCEEEEECCcc---------------cccchhHHHHHHHhhCCCcceeecc
Confidence 0111234444 4455566666666677999987764432 2344566777777765 56776654
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccC------CCCCCCCCCcHHHH---HHHHhhCCCcEEEecCCCCHHHHHHHH
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRT------KAERPRHRNRIEMI---RTLTQHLKIPVIANGGSKEIVDYGGVF 247 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~------~~~~~~~p~~~~~v---~~i~~~~~ipvia~GGI~s~~~~~~~l 247 (306)
- - +.+.++.|.++|||+|.|--.. +...-.+-+.+..+ +..++..++|||+-|||.+.-|+-+++
T Consensus 156 V--~----T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAl 229 (365)
T d1zfja1 156 I--A----TAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKAL 229 (365)
T ss_dssp E--C----SHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHH
T ss_pred c--c----cHHHHHHHHhcCCceEEeeecccccccCcceeeeeccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhh
Confidence 3 2 3566677788999999874211 11111222344444 444556689999999999999999999
Q ss_pred Hhhh---hhccccC
Q psy4398 248 SLNC---AFLRNHY 258 (306)
Q Consensus 248 ~~~v---~vGrall 258 (306)
..|+ |+|+.|-
T Consensus 230 a~GAd~VMlG~~lA 243 (365)
T d1zfja1 230 AAGGNAVMLGSMFA 243 (365)
T ss_dssp HTTCSEEEESTTTT
T ss_pred hccCCEEEecchhc
Confidence 8864 8888764
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=98.75 E-value=5.9e-08 Score=88.95 Aligned_cols=215 Identities=13% Similarity=0.090 Sum_probs=123.1
Q ss_pred ccccc-cccccCCceEEccCCCCCCHHHHHH-HHHcCCCEEEecceechhhhhhhhh-----hhcccccc----------
Q psy4398 20 ANANQ-ANINYSNKIILAPMVRMNTLPFRLL-ALDYGADLVYSEELVDHKLVKTERK-----VNDLLNTI---------- 82 (306)
Q Consensus 20 ~~~~~-~~l~l~n~i~lAPm~~~t~~~~r~~-~~~~G~g~~~te~~~~~~~~~~~~~-----~~~~l~~~---------- 82 (306)
+++++ .+++|+-||+.|||-.+++..+... ++.+|.|.+--.+ +.+........ ....++..
T Consensus 29 l~~~~t~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~-~ie~q~~~v~~Vk~~~~~~~~~~~~d~~~~~~~~ 107 (388)
T d1eepa_ 29 LKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNM-SIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEI 107 (388)
T ss_dssp CCEESSSSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSS-CHHHHHHHHHHHHTCC------------------
T ss_pred eeEEeeCCEecCCCEEecCCCCCCCHHHHHHHHHCCCEEEEeCCC-CHHHHHHHHHHhhhccccccccccCccccccchh
Confidence 67778 5799999999999999999998875 5556667664322 22221110000 00000000
Q ss_pred -----------cccCCCCCceeeecCCCCCC--ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCcccc
Q psy4398 83 -----------DFVDPLDGSVVFRTCPREKN--KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAA 149 (306)
Q Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~--p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~ 149 (306)
.+.++.....+-..+.+... .+.+.+ +..++....+...+++|+|.|-+...+-
T Consensus 108 ~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAv-g~~~~~~~ra~~L~~aG~D~ivID~AhG------------ 174 (388)
T d1eepa_ 108 FTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAV-SIDIDTIERVEELVKAHVDILVIDSAHG------------ 174 (388)
T ss_dssp --------------------CCTTCCBCTTSCBCCEEEE-CSCTTHHHHHHHHHHTTCSEEEECCSCC------------
T ss_pred hhhhhhhhhhHHHHhHHHHhhhhHHHhhhhccchhhhcc-CCCHHHHHHHHHHHhhccceeeeecccc------------
Confidence 00000000000111111111 233333 3344455555556667999998864431
Q ss_pred ccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccC------CCCCCCCCCcHHHHHH
Q psy4398 150 LLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRT------KAERPRHRNRIEMIRT 222 (306)
Q Consensus 150 l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~------~~~~~~~p~~~~~v~~ 222 (306)
..+.+.++++.+++.. ++||.+.-- - +.+.++.|.++|+|+|.|--.. +...-.+.+.+..+..
T Consensus 175 ---~s~~~~~~i~~ik~~~~~v~vIaGNV--~----T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~ 245 (388)
T d1eepa_ 175 ---HSTRIIELIKKIKTKYPNLDLIAGNI--V----TKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICD 245 (388)
T ss_dssp ---SSHHHHHHHHHHHHHCTTCEEEEEEE--C----SHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHH
T ss_pred ---chHHHHHHHHHHHHHCCCCceeeccc--c----CHHHHHHHHhcCCCeeeeccccccccccccccccCcchHHHHHH
Confidence 2345567888887765 677766644 2 3566677788999999873221 1111122234555544
Q ss_pred HHh---hCCCcEEEecCCCCHHHHHHHHHhhh---hhcccc
Q psy4398 223 LTQ---HLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNH 257 (306)
Q Consensus 223 i~~---~~~ipvia~GGI~s~~~~~~~l~~~v---~vGral 257 (306)
+.+ ...+|||+-|||.+.-|+-++|.+|+ |+|+.+
T Consensus 246 ~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~l 286 (388)
T d1eepa_ 246 VYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLF 286 (388)
T ss_dssp HHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred HHHHhccCCceEEeccccCcCCceeeeEEeccceeecchhh
Confidence 444 44799999999999999999999864 888876
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.64 E-value=2.5e-07 Score=84.01 Aligned_cols=202 Identities=12% Similarity=0.070 Sum_probs=119.7
Q ss_pred cccccc-ccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCC
Q psy4398 20 ANANQA-NINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCP 98 (306)
Q Consensus 20 ~~~~~~-~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (306)
++.++. ++.|+-||+.|||-.+++..+.....+.|.=.++....+.+......... .....+.++ +.
T Consensus 34 ls~~~~~~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlhr~~~~e~~~~~v~~v---~~~e~~~~~---------~~ 101 (368)
T d2cu0a1 34 VSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRV---KRAEKYKNA---------VR 101 (368)
T ss_dssp CCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHH---HTCCCCTTC---------CB
T ss_pred eeEEeeCCcccCCCEEeCCCCCcCCHHHHHHHHHCCCeeEecccCCHHHHHHHHHhh---hhhhhcccc---------cc
Confidence 666775 68899999999999999999877654655333333444443322211110 000001111 11
Q ss_pred CCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 99 REKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 99 ~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
.....+++.+ +.+++++.++...++.|+|.|-|.....+ .+...+.++.+++..+.|+.+.--
T Consensus 102 d~~~~~~v~~-~~~~~~~~r~~~l~~aGvd~ivID~A~Gh---------------~~~~i~~lK~ir~~~~~~vIaGNV- 164 (368)
T d2cu0a1 102 DENGELLVAA-AVSPFDIKRAIELDKAGVDVIVVDTAHAH---------------NLKAIKSMKEMRQKVDADFIVGNI- 164 (368)
T ss_dssp CTTSCBCCEE-EECTTCHHHHHHHHHTTCSEEEEECSCCC---------------CHHHHHHHHHHHHTCCSEEEEEEE-
T ss_pred ccCccEEEEe-ccChHHHHHHHHHHHcCCCEEEecCcccc---------------hhhhhhhhhhhhhhcccceeeccc-
Confidence 1122233333 22345566666666779999988755433 233556778888888877776433
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcc------cCCCCCCCCCCcHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHh
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHG------RTKAERPRHRNRIEMIRTLTQH---LKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~------~~~~~~~~~p~~~~~v~~i~~~---~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
-+.+.. +...|+|+|-|-- .|+...-.+.+.+..+.++.++ .++|||+-|||.+.-|+-+++..
T Consensus 165 -aT~e~~------~~l~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~ 237 (368)
T d2cu0a1 165 -ANPKAV------DDLTFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAA 237 (368)
T ss_dssp -CCHHHH------TTCTTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHT
T ss_pred -cCHHHH------HhhhcCcceeecccCcccccchhhcccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeee
Confidence 233322 2336999998721 1111122334466666555544 47999999999999999999988
Q ss_pred hh---hhcccc
Q psy4398 250 NC---AFLRNH 257 (306)
Q Consensus 250 ~v---~vGral 257 (306)
|+ |+|+.|
T Consensus 238 GAd~VMlG~~l 248 (368)
T d2cu0a1 238 GADAVMLGNLL 248 (368)
T ss_dssp TCSEEEESTTT
T ss_pred ccceeeccchh
Confidence 65 888865
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=98.63 E-value=1.3e-07 Score=79.28 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=82.0
Q ss_pred HHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEE
Q psy4398 121 KKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAI 200 (306)
Q Consensus 121 ~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i 200 (306)
..+..|+|.|.++..++.. ..+.+.+.++.+++....++.+.-. . ..+.+..+.+.|+|+|
T Consensus 83 ~~~~agad~v~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~v~~~~--~----t~~~a~~~~~~g~d~i 143 (222)
T d1y0ea_ 83 ELIESQCEVIALDATLQQR-------------PKETLDELVSYIRTHAPNVEIMADI--A----TVEEAKNAARLGFDYI 143 (222)
T ss_dssp HHHHHTCSEEEEECSCSCC-------------SSSCHHHHHHHHHHHCTTSEEEEEC--S----SHHHHHHHHHTTCSEE
T ss_pred hHHHcCCCEEEeecccccc-------------ccchHHHHHHHHHHhCCceEEeecC--C----CHHHHHHHHHcCCCeE
Confidence 3445699999998776431 1122345566666554333333222 1 2345567788999999
Q ss_pred EEcccCCC----CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 201 GVHGRTKA----ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 201 ~v~~~~~~----~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
.++..... +......+++.++++++.+++|||+.|||.|.+|+.++++.| +++||++. +|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~-rp 210 (222)
T d1y0ea_ 144 GTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAIT-RP 210 (222)
T ss_dssp ECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH-CH
T ss_pred EEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhc-CH
Confidence 87544322 122223468899999999999999999999999999999985 59999976 44
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=5.6e-07 Score=83.06 Aligned_cols=212 Identities=14% Similarity=0.118 Sum_probs=121.1
Q ss_pred ccccccccccCCceEEccCCCC--C----CHH-HHHHHHHc--CCCEEEecceechhhhhhhhhhhcccccccccCCCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRM--N----TLP-FRLLALDY--GADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDG 90 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~--t----~~~-~r~~~~~~--G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (306)
+++++.|.+++.||+++||.+- . ... ....+... |....+...... ....
T Consensus 82 lst~~lG~~l~~P~~Isp~g~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~-~~~~-------------------- 140 (414)
T d1kbia1 82 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASC-SPEE-------------------- 140 (414)
T ss_dssp CCEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSS-CHHH--------------------
T ss_pred CceeECCccCCCCEEEChhhhhcccCcchhHHHHHhhHHHhhhcccccccccccc-chHH--------------------
Confidence 8999999999999999998641 1 111 11212122 223332221110 0000
Q ss_pred ceeeecCCCCCCceEEEecCC-CHHHHHHHHHHHhc-CCCEEEEccCCCccccc-------------------------c
Q psy4398 91 SVVFRTCPREKNKIILQIGTA-DPERALEAAKKVEH-DVAAIDINMGCPKQFSL-------------------------T 143 (306)
Q Consensus 91 ~~~~~~~~~~~~p~ivql~g~-~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~-------------------------~ 143 (306)
.....+....+...|+... +.+......++++. |++++-++...|..-.+ .
T Consensus 141 --~~~~a~~~~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~ 218 (414)
T d1kbia1 141 --IIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEES 218 (414)
T ss_dssp --HHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSC
T ss_pred --HHHHhcCCccchhhcccccccHHHHHHHHHHHHHcCCcccccccccccccccHHHHHhcccccccchhhhhccccccc
Confidence 0011111234567787654 45555556666764 99988887765531100 0
Q ss_pred CCccccccC--ChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHH
Q psy4398 144 GGMGAALLS--TPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIR 221 (306)
Q Consensus 144 ~~~G~~l~~--~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~ 221 (306)
.+.+..+.+ ++.+.-+.++.+++.++.|+.+|-- .. .+-+..+.+.|++++.+++....+....+.....+.
T Consensus 219 ~~~~~~i~~~~~~~l~~~~i~~i~~~~~~~~i~kgi--~~----~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~ 292 (414)
T d1kbia1 219 QGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGV--QR----TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLA 292 (414)
T ss_dssp CCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEE--CS----HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHH
T ss_pred ccHHHHHHHhcccCCCHHHHHHHhccCCceEEeecc--ch----hHHHHHHHhcCCcceeeccccccccccccccccchh
Confidence 011111111 2223336688888888999999966 33 344455678999999986543222222233333344
Q ss_pred HHHhh-----C--CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 222 TLTQH-----L--KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 222 ~i~~~-----~--~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
++.+. + ++|||+.|||++.-|+-+++..|+ .+||+++..
T Consensus 293 ~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigrp~L~~ 341 (414)
T d1kbia1 293 ETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYA 341 (414)
T ss_dssp HHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred hhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 44322 2 589999999999999999998765 899988743
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.47 E-value=2.3e-07 Score=78.26 Aligned_cols=75 Identities=13% Similarity=-0.027 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCCC-CCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCC
Q psy4398 186 IALCKRLEACGIIAIGVHGRTKAERPRH-RNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVE 261 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~~~~~~~~~-p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p 261 (306)
.+.++.++++|+|+|.++++...+.... ......+.++.+..++|||+.|||+|++|+.++++.| +++|+++. +|
T Consensus 140 ~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~-~p 218 (230)
T d1yxya1 140 FDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT-RP 218 (230)
T ss_dssp HHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH-CH
T ss_pred HHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhc-CH
Confidence 4567888899999999887765432221 1222345666677899999999999999999999875 49999976 44
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.41 E-value=1.4e-05 Score=67.02 Aligned_cols=204 Identities=14% Similarity=0.129 Sum_probs=133.3
Q ss_pred ccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCC
Q psy4398 22 ANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREK 101 (306)
Q Consensus 22 ~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (306)
.+|+|.+|+.|+++-.+--.+...+.......|+.++..-.-..+ ........++ +.++..+
T Consensus 3 L~I~g~~f~SRLilGTgkY~s~~~~~~ai~aSgaeiVTVAlRR~~---~~~~~~~~~l---------------~~i~~~~ 64 (251)
T d1xm3a_ 3 LTIGGKSFQSRLLLGTGKYPSFDIQKEAVAVSESDILTFAVRRMN---IFEASQPNFL---------------EQLDLSK 64 (251)
T ss_dssp EEETTEEESCCEEEECSCSSCHHHHHHHHHHHTCSEEEEETTSST---TC-------C---------------TTCCGGG
T ss_pred eEECCEEEEcceEEEcCCCCCHHHHHHHHHHhCCCEEEEEEeeec---CcCCCCcchh---------------hhccccc
Confidence 468999999999999888556666777666788776654321100 0001111111 1121123
Q ss_pred CceEEEec-CCCHHHHHHHHHHHhc--CCCEEEEcc-CCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 102 NKIILQIG-TADPERALEAAKKVEH--DVAAIDINM-GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 102 ~p~ivql~-g~~~~~~~~aa~~~~~--g~d~veln~-gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
..+..|-. +.+.++....|+.+.+ +-+-|-|.. +.|. .|.-|+..+.+..+.+.+. ++-|..-+.
T Consensus 65 ~~lLPNTAGc~tA~EAvr~A~lARE~~~t~~IKLEVi~D~~----------~L~PD~~etl~Aae~Lv~e-GF~VlpY~~ 133 (251)
T d1xm3a_ 65 YTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIGCSR----------SLLPDPVETLKASEQLLEE-GFIVLPYTS 133 (251)
T ss_dssp SEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTT----------TCCBCHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred eEEccchHHHhhHHHHHHHHHHHHHhcCCceEEEEEecCCC----------CcCCCHHHHHHHHHHHHhC-CcEEEEecC
Confidence 44666644 5789999999998876 566666542 2221 3555665555555555432 778888888
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFL 254 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vG 254 (306)
.| ..+|++|++.||..|---+... +...|..+.+.++.|.+..++|||.-+||.++.|+..+++.|. .+.
T Consensus 134 --~D----~v~ak~Le~~Gc~avMPlgsPI-GSg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG~daVLvN 206 (251)
T d1xm3a_ 134 --DD----VVLARKLEELGVHAIMPGASPI-GSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLN 206 (251)
T ss_dssp --SC----HHHHHHHHHHTCSCBEECSSST-TCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred --CC----HHHHHHHHHcCChhHHHhhhhh-hcCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHHHccCCEEEec
Confidence 44 5789999999999987544322 2233455778889999999999999999999999999999854 666
Q ss_pred cccC--CCC
Q psy4398 255 RNHY--PVE 261 (306)
Q Consensus 255 rall--~~p 261 (306)
+|+- .||
T Consensus 207 TAIA~a~dP 215 (251)
T d1xm3a_ 207 TAVSGADDP 215 (251)
T ss_dssp HHHHTSSSH
T ss_pred hhhhcCCCH
Confidence 6652 466
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=98.41 E-value=1.6e-06 Score=78.42 Aligned_cols=188 Identities=13% Similarity=0.058 Sum_probs=109.7
Q ss_pred cccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCCCCCce
Q psy4398 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKI 104 (306)
Q Consensus 25 ~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ 104 (306)
+++.|+-||+-|||-.+++..+.....+.|.=.++....+.+.......... .....+
T Consensus 45 ~~i~l~iPIIsAnMDTVt~~~mA~~la~~GglgvihR~~~ie~~~~~~~~~~----------------------~~~~~~ 102 (362)
T d1pvna1 45 SEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIFGSQSIESQAAMVHAVK----------------------NFRYLV 102 (362)
T ss_dssp CSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHH----------------------TCCCCC
T ss_pred cccccCCcEEecCCCCcCCHHHHHHHHHCCCEEEEeecCCHHHHHHHhhhhh----------------------hccccc
Confidence 4777889999999999999998765445554334455444433221111100 011112
Q ss_pred EEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCCh
Q psy4398 105 ILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNE 182 (306)
Q Consensus 105 ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~ 182 (306)
...+...+ ....+.....+|+|.+-|.... ++ .+.+.+.++.+++.. ..||.+.-= -+
T Consensus 103 ~~~~~~~~--~~~~~~~L~~ag~d~i~IDvAh--------G~-------~~~v~~~i~~ir~~~~~~~~IiAGNV--aT- 162 (362)
T d1pvna1 103 GAGINTRD--FRERVPALVEAGADVLCIDSSD--------GF-------SEWQKITIGWIREKYGDKVKVGAGNI--VD- 162 (362)
T ss_dssp EEEECSSS--HHHHHHHHHHHTCSEEEECCSC--------CC-------BHHHHHHHHHHHHHHGGGSCEEEEEE--CS-
T ss_pred ccccchhh--hHHHHHHHhhcCceEEeechhc--------cc-------hhHHHHHHHHHHHhhccceeeecccc--cC-
Confidence 22222222 2233333445689988886443 22 233456677775544 467776643 22
Q ss_pred HHHHHHHHHHHHcCCcEEEEcc------cCCCCCCCCCCcHHHHHHHHhh---------CCCcEEEecCCCCHHHHHHHH
Q psy4398 183 ADTIALCKRLEACGIIAIGVHG------RTKAERPRHRNRIEMIRTLTQH---------LKIPVIANGGSKEIVDYGGVF 247 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~------~~~~~~~~~p~~~~~v~~i~~~---------~~ipvia~GGI~s~~~~~~~l 247 (306)
.+.++.|.++|+|.|-|-- .|+...-.+-+.+..+.+++++ .++|||+-|||++.-|+-+++
T Consensus 163 ---~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAl 239 (362)
T d1pvna1 163 ---GEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLAL 239 (362)
T ss_dssp ---HHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHH
T ss_pred ---HHHHHHHHHhCCcEEEecccccccccchhhhccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEE
Confidence 3556777889999998731 1111111223355555555432 258999999999999999999
Q ss_pred Hhhh---hhcccc
Q psy4398 248 SLNC---AFLRNH 257 (306)
Q Consensus 248 ~~~v---~vGral 257 (306)
.+|+ |+|+.|
T Consensus 240 a~GAd~VM~G~~l 252 (362)
T d1pvna1 240 AMGADFIMLGRYF 252 (362)
T ss_dssp HTTCSEEEESHHH
T ss_pred EEeccceeehhhh
Confidence 8864 888755
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.38 E-value=6.2e-05 Score=63.40 Aligned_cols=208 Identities=12% Similarity=0.076 Sum_probs=132.1
Q ss_pred ccccccccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceeeecCCC
Q psy4398 20 ANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPR 99 (306)
Q Consensus 20 ~~~~~~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 99 (306)
.|.+|++.+|+.||++..+--.+...+.......|+.++..-.- +...... .. ...+.+.++.
T Consensus 1 ~Pl~I~~~~f~SRLilGTGky~s~~~~~~ai~aSgaeiVTVAvR----R~~~~~~--~~-----------~~~l~~~i~~ 63 (243)
T d1wv2a_ 1 TPFVIAGRTYGSRLLVGTGKYKDLDETRRAIEASGAEIVTVAVR----RTNIGQN--PD-----------EPNLLDVIPP 63 (243)
T ss_dssp CCEEETTEEESCCEEECCSCSSSHHHHHHHHHHSCCSEEEEEGG----GCCC--------------------------CT
T ss_pred CCeEECCEEEEcceEEEcCCCCCHHHHHHHHHHhCCCEEEEEcc----ccccCCC--cc-----------cchHHHhccc
Confidence 37789999999999999888555566666666788777643211 1000000 00 0011122222
Q ss_pred CCCceEEEec-CCCHHHHHHHHHHHhc-C--CCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE
Q psy4398 100 EKNKIILQIG-TADPERALEAAKKVEH-D--VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK 175 (306)
Q Consensus 100 ~~~p~ivql~-g~~~~~~~~aa~~~~~-g--~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK 175 (306)
.+..+..|-. +.++++...+|+.+.+ . -+-|.|..-- |. -.++-|+-.+.+..+...+ -++-+..-
T Consensus 64 ~~~~~LPNTAGc~taeeAv~~A~larE~~~~~~~iKLEVi~-------d~--~~L~Pd~~etl~Aa~~Lv~-egF~Vlpy 133 (243)
T d1wv2a_ 64 DRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLA-------DQ--KTLFPNVVETLKAAEQLVK-DGFDVMVY 133 (243)
T ss_dssp TTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBS-------CT--TTCCBCHHHHHHHHHHHHT-TTCEEEEE
T ss_pred cCeeecccccccccHHHHHHHHHHHHHHhCCCceEEEeeec-------cc--cccCCcHHHHHHHHHHhhc-CceEEEec
Confidence 2334555643 5789999999998876 3 4788885331 11 1344566555555555433 25677777
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh---hh
Q psy4398 176 IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN---CA 252 (306)
Q Consensus 176 ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~---v~ 252 (306)
+. +| .-+|+.+++.|+..+---+-.. +.-.+..+...++.+++..++|||.-+||.++.|+..+++.| |.
T Consensus 134 ~~--~D----~v~ak~le~~Gc~~vMplgsPI-Gsg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG~dgVL 206 (243)
T d1wv2a_ 134 TS--DD----PIIARQLAEIGCIAVMPLAGLI-GSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVL 206 (243)
T ss_dssp EC--SC----HHHHHHHHHSCCSEEEECSSST-TCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred cC--CC----HHHHhHHHHcCceeeeeccccc-ccccccccHHHHHhccccCCcceEeecccCCHHHHHHHHHccCCEEE
Confidence 77 44 5688999999999886543322 222234566778888888999999999999999999999975 47
Q ss_pred hccccC--CCC
Q psy4398 253 FLRNHY--PVE 261 (306)
Q Consensus 253 vGrall--~~p 261 (306)
+++++. .||
T Consensus 207 vnsaIa~A~dP 217 (243)
T d1wv2a_ 207 MNTAIAHAKDP 217 (243)
T ss_dssp ESHHHHTSSSH
T ss_pred echHhhcCCCH
Confidence 777764 366
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=98.11 E-value=1.9e-05 Score=68.64 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCcc--------ccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccC
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQ--------FSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVF 179 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~--------~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g 179 (306)
.+|+++++.|+.+. +||+++-++.+.+.. +......|....++.+.-.+.++++|+.++ +.+.+-...+
T Consensus 25 ~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~v~aiRe~vG~~~~l~vDan~~ 104 (278)
T d2gl5a1 25 VTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSL 104 (278)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHHHHHHHHHHhccccceeeccccc
Confidence 57999999998775 599999998664321 111122222233456667788999999884 5566666667
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccC
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHY 258 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall 258 (306)
|+.++++++++.|++.++..+- ++ ..+.+++..+++++.+++||.+.-.+.+.++++++++.+. .+-.
T Consensus 105 ~~~~~Ai~~~~~L~~~~l~wiE-------eP-i~~~d~~~~~~L~~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~--- 173 (278)
T d2gl5a1 105 LGTNSAIQFAKAIEKYRIFLYE-------EP-IHPLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQ--- 173 (278)
T ss_dssp SCHHHHHHHHHHHGGGCEEEEE-------CS-SCSSCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEEC---
T ss_pred ccchhhHHHHHHhcccccceec-------cc-ccccchhhhhhhccccccceecccccCChHHHhhhhccccceeEe---
Confidence 9999999999999999887663 12 2245889999999999999988888999999999998643 1111
Q ss_pred CCC-Cc----hHHHHHHHHHhcCCCCC
Q psy4398 259 PVE-KL----PKTILYAHCKYKRFEVP 280 (306)
Q Consensus 259 ~~p-~~----~~~~l~~~~~~~g~~~~ 280 (306)
-|+ .. .-+.+.+..+++|+++.
T Consensus 174 ~d~~~~GGit~~~kia~la~~~gi~v~ 200 (278)
T d2gl5a1 174 PDLCLCGGITEGKKICDYANIYDTTVQ 200 (278)
T ss_dssp CCTTTTTHHHHHHHHHHHHHTTTCEEC
T ss_pred eccccccchhhHHHhhhhhhhhccccc
Confidence 122 11 12366677788887743
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=98.08 E-value=7.2e-05 Score=62.66 Aligned_cols=141 Identities=15% Similarity=0.101 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEeccC-CChHHHHHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIRVF-HNEADTIALCKRLE 193 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~g-~~~~~~~~~a~~l~ 193 (306)
..++...++.|+|.||+=+. +|.....+.+.+.+-++++++.++ .++-|-+-.+ .+.++....++.+.
T Consensus 73 ~~E~~~Ai~~GAdEID~Vin----------~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~ 142 (225)
T d1mzha_ 73 VKEAVEAVRDGAQELDIVWN----------LSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICI 142 (225)
T ss_dssp HHHHHHHHHTTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEeec----------hhhhhcccHHHHHHHHHHHHHhccCceeehhhhhccCCHHHHHHHHHHHH
Confidence 44555555679999998421 333344566777777788877764 3333333322 46677899999999
Q ss_pred HcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCCCchHHHHHH
Q psy4398 194 ACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVEKLPKTILYA 270 (306)
Q Consensus 194 ~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p~~~~~~l~~ 270 (306)
++|+|+|--+.. ...+....+.++.+++.+ ++.|=++|||+|.+++.+++++|+ -+|+... ...+++
T Consensus 143 ~aGadfiKTSTG----~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~RiGtSs~------~~i~~e 212 (225)
T d1mzha_ 143 EAGADFIKTSTG----FAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSSG------ISIAEE 212 (225)
T ss_dssp HHTCSEEECCCS----CSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCH------HHHHHH
T ss_pred HcccceEeecCC----CCCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchhheecCcH------HHHHHH
Confidence 999999975322 222335667788888777 589999999999999999999876 5665421 125667
Q ss_pred HHHhcC
Q psy4398 271 HCKYKR 276 (306)
Q Consensus 271 ~~~~~g 276 (306)
|.+++.
T Consensus 213 ~~~~~~ 218 (225)
T d1mzha_ 213 FLKRHL 218 (225)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 766654
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.08 E-value=1.1e-05 Score=68.90 Aligned_cols=146 Identities=13% Similarity=0.036 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCc------ccccc--CChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 111 ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM------GAALL--STPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~------G~~l~--~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
.+.+.+.++++.+.+|+|.|||-+. .++...||- --++. -+.+.+.++++.+|+..+.|+.+-.-..+-.
T Consensus 16 P~~~~s~~~l~~l~~g~d~iEiGiP--fSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~ 93 (248)
T d1geqa_ 16 PDKQSTLNFLLALDEYAGAIELGIP--FSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIY 93 (248)
T ss_dssp SCHHHHHHHHHHHGGGBSCEEEECC--CSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCEEEECCC--CCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEecccccc
Confidence 3567888888877679999999543 222222210 00111 2567888999999988888877654411100
Q ss_pred H-HHHHHHHHHHHcCCcEEEEccc--------------------------CC----------CCC---------CCC---
Q psy4398 183 A-DTIALCKRLEACGIIAIGVHGR--------------------------TK----------AER---------PRH--- 213 (306)
Q Consensus 183 ~-~~~~~a~~l~~~G~d~i~v~~~--------------------------~~----------~~~---------~~~--- 213 (306)
. ...++++.+.++|+|++.+-+- +. ... ..|
T Consensus 94 ~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~vs~~GvTG~~~ 173 (248)
T d1geqa_ 94 RAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGARE 173 (248)
T ss_dssp HHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC-------
T ss_pred ccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCeEEEEecccccccch
Confidence 1 1456666666666666665321 10 000 001
Q ss_pred --C-CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccC
Q psy4398 214 --R-NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHY 258 (306)
Q Consensus 214 --p-~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall 258 (306)
+ ...+.+.++++.+++|++..-||.|+++++++++. |+.+|++++
T Consensus 174 ~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv 224 (248)
T d1geqa_ 174 EIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALV 224 (248)
T ss_dssp CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred hhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEECHHHH
Confidence 1 12578899999999999999999999999998864 779999986
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=97.95 E-value=8.4e-05 Score=61.64 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=89.3
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C-CChHHHHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F-HNEADTIALCKRL 192 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g-~~~~~~~~~a~~l 192 (306)
..++...++.|+|.||+=+ .+|.....+.+.+.+-++++++.++. ..+|+=+ + .+.++....++.+
T Consensus 73 ~~e~~~ai~~GA~EiD~V~----------n~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~a 141 (211)
T d1ub3a_ 73 ALEAALACARGADEVDMVL----------HLGRAKAGDLDYLEAEVRAVREAVPQ-AVLKVILETGYFSPEEIARLAEAA 141 (211)
T ss_dssp HHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHSTT-SEEEEECCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEee----------ccchhhcCCHHHHHHHHHHHHHhccC-CceEEEeccccCCHHHHHHHHHHH
Confidence 3444445567999999832 24544556788888888888887752 3445433 2 4667799999999
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
.++|+|+|--+.. ...+....+.++.+++.+ ++.|=++|||+|.+++.+++++|+ -+|+
T Consensus 142 ~~aGadfiKTSTG----~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~aGa~riGt 203 (211)
T d1ub3a_ 142 IRGGADFLKTSTG----FGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGT 203 (211)
T ss_dssp HHHTCSEEECCCS----SSSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHhccceEEecCC----CCCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHHhhhHhcc
Confidence 9999999975422 222335677777777777 578999999999999999999876 4444
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=97.95 E-value=0.00014 Score=61.67 Aligned_cols=147 Identities=7% Similarity=-0.016 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~ 186 (306)
+.+++++.+.++.+. .||..+-+++|.+ +.+.-.+.++++|+.++ ..|.+-...+|+.++++
T Consensus 18 ~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~---------------~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai 82 (247)
T d1tzza1 18 GKGLSMLRGEMRGYLDRGYNVVKMKIGGA---------------PIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGI 82 (247)
T ss_dssp --CHHHHHHHHHHHHTTTCSEEEEECSSS---------------CHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCC---------------CHHHHHHHHHHHHHhccCCceEEecccccccchhHH
Confidence 457888988888765 5999999986631 34555677888888774 44555555579999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCCC---c
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEK---L 263 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p~---~ 263 (306)
++++.|++.++.++- ++. .+.+++..+++++.+++||.+.-.+.+..+++++++.++.-...-+.+|. .
T Consensus 83 ~~~~~l~~~~i~wiE-------eP~-~~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d~~~~ 154 (247)
T d1tzza1 83 AYAKMLRDYPLFWYE-------EVG-DPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALS 154 (247)
T ss_dssp HHHHHHTTSCCSEEE-------CCS-CTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTT
T ss_pred HHHhhcchhhhhhhc-------ccc-ccccchhhhhhhhccccccccchhhhhhHHHHHHHHccCCcCcceeEeeccccc
Confidence 999999999988774 222 34578899999999999999888899999999999865432222122221 1
Q ss_pred ----hHHHHHHHHHhcCCCC
Q psy4398 264 ----PKTILYAHCKYKRFEV 279 (306)
Q Consensus 264 ----~~~~l~~~~~~~g~~~ 279 (306)
.-..+.+..+.+|++.
T Consensus 155 GGit~~~~i~~~a~~~g~~~ 174 (247)
T d1tzza1 155 YGLCEYQRTLEVLKTHGWSP 174 (247)
T ss_dssp TCHHHHHHHHHHHHHTTCCG
T ss_pred cchhHHHHHHHHHHHcCCCe
Confidence 1136677788888873
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=97.92 E-value=0.00019 Score=60.71 Aligned_cols=153 Identities=12% Similarity=0.114 Sum_probs=108.4
Q ss_pred CCceEEEecCC-CHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEe
Q psy4398 101 KNKIILQIGTA-DPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKI 176 (306)
Q Consensus 101 ~~p~ivql~g~-~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 176 (306)
..|+...+... ++++++++++.+++ ||..+-+.+|.. +++.=.+.++++|+.+ +..+.+-.
T Consensus 5 ~vP~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~---------------~~~~D~~~v~~ir~~~g~~~~l~vDa 69 (244)
T d2chra1 5 AIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR---------------SPQDDLIHMEALSNSLGSKAYLRVDV 69 (244)
T ss_dssp EEEBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSS---------------CHHHHHHHHHHHHHHTTTTSEEEEEC
T ss_pred cEEEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCCC---------------CHHHHHHHHHHHHHhcCCCceEEEeC
Confidence 35777777654 45778888888775 999999976532 2333356678888887 45566666
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccc
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRN 256 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGra 256 (306)
..+|+.+++.++++.+++.++.++- ++ ..+.+++..+++++.+++||++.-.+.+.+++.++++.+.. ..
T Consensus 70 N~~~~~~~A~~~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~--d~ 139 (244)
T d2chra1 70 NQAWDEQVASVYIPELEALGVELIE-------QP-VGRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSV--DV 139 (244)
T ss_dssp TTCCCTHHHHHHHHHHHTTTCCEEE-------CC-SCSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTTCC--SE
T ss_pred CCCcchHHHHHHHHHHhhhhHHHHh-------hh-hhhccchhhhhhccceeeeeeecccccccchhhhhhhccee--EE
Confidence 6689999999999999999987763 22 22457899999999999999999899999999998876320 01
Q ss_pred cCCCC-C----chHHHHHHHHHhcCCC
Q psy4398 257 HYPVE-K----LPKTILYAHCKYKRFE 278 (306)
Q Consensus 257 ll~~p-~----~~~~~l~~~~~~~g~~ 278 (306)
+.-|+ . ..-+.+.++.+.+|++
T Consensus 140 v~~d~~~~GGit~~~~i~~~a~~~gi~ 166 (244)
T d2chra1 140 FSLKLCNMGGVSATQKIAAVAEASGIA 166 (244)
T ss_dssp ECCCHHHHTSHHHHHHHHHHHHHHTCE
T ss_pred EeeccccccchHHHHHHHHHHHHcCCC
Confidence 11122 1 1112566677777776
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.92 E-value=0.00027 Score=59.91 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~~ 187 (306)
.+|+++++.|+.+. .||..+-+..+.|... . ..+++.-.+.++++|+.++ +.+.+-...+|+.+++.+
T Consensus 22 ~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~-----~----~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~ 92 (255)
T d1rvka1 22 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVS-----W----APDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALA 92 (255)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTST-----T----CCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCccc-----c----ccCHHHHHHHHHHHHHHcCCccceecccccccccchhhh
Confidence 46899999888775 5999999998865521 1 2356666778888988874 456666666799999999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHH-HHHHHHHhhhhhccccCCCCC----
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIV-DYGGVFSLNCAFLRNHYPVEK---- 262 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~-~~~~~l~~~v~vGrall~~p~---- 262 (306)
+++.+++.++.++- + +..+.+++..+++++.+++||.+-..+.+.. +..++++.++ .-+-+|.
T Consensus 93 ~~~~l~~~~l~~iE-------e-P~~~~d~~~~~~l~~~~~~pI~~~E~~~~~~~~~~~~i~~~~----~dii~~d~~~~ 160 (255)
T d1rvka1 93 LGRGLEKLGFDWIE-------E-PMDEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGA----CDILRTGVNDV 160 (255)
T ss_dssp HHHHHHTTTCSEEE-------C-CSCTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTC----CSEEEECHHHH
T ss_pred hhhhcccchhhhhc-------C-CcccccHHHHHHHHHhcccceeehhhcccchhhhhhhhhhch----hhhcccccccc
Confidence 99999999998874 2 2234578899999999999998888888864 5677776532 0011111
Q ss_pred --c-hHHHHHHHHHhcCCCC
Q psy4398 263 --L-PKTILYAHCKYKRFEV 279 (306)
Q Consensus 263 --~-~~~~l~~~~~~~g~~~ 279 (306)
+ .-+.+.++.+.+|+++
T Consensus 161 GGit~~~~i~~~a~~~gi~v 180 (255)
T d1rvka1 161 GGITPALKTMHLAEAFGMEC 180 (255)
T ss_dssp TSHHHHHHHHHHHHHTTCCE
T ss_pred ccchHHHHHHHHHHHhccce
Confidence 1 1236677788888873
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=97.90 E-value=0.00024 Score=60.25 Aligned_cols=126 Identities=15% Similarity=0.153 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C-CChHHHHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F-HNEADTIALCKRL 192 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g-~~~~~~~~~a~~l 192 (306)
..++...++.|+|.||+=+. +|.....+.+.+.+-++++++.++ ...+|+=+ + .+.++....++.+
T Consensus 106 ~~Ea~~Ai~~GAdEID~Vin----------~~~l~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~e~~~a~~ia 174 (251)
T d1o0ya_ 106 AHEAIFAVESGADEIDMVIN----------VGMLKAKEWEYVYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVIS 174 (251)
T ss_dssp HHHHHHHHHHTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEec----------cchhhcCCHHHHHHHHHHHHHHhc-ccceeeeecccccCcHHHHHHHHHH
Confidence 34454555679999998322 344445677888888888888774 23445433 2 4566788999999
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhhh-hhccc
Q psy4398 193 EACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLNC-AFLRN 256 (306)
Q Consensus 193 ~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~v-~vGra 256 (306)
.++|+|+|--+.. ...+....+.++.+++.+ ++.|=++|||+|.+++.+++++|+ -+|+.
T Consensus 175 ~~aGadfvKTSTG----f~~~gat~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~aGa~riGtS 237 (251)
T d1o0ya_ 175 KLAGAHFVKTSTG----FGTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTS 237 (251)
T ss_dssp HHTTCSEEECCCS----SSSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHhCcceeeccCC----CCCCCcCHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHHHHhhHHhCCC
Confidence 9999999975432 223345667777777766 478889999999999999999876 66664
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=97.85 E-value=7.7e-05 Score=64.21 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccC--CCccccccCCc------ccccc--CChHHHHHHHHHHHhcc-cccEEEEecc
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMG--CPKQFSLTGGM------GAALL--STPDIACNILTTLISNL-SIPVSCKIRV 178 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~g--cP~~~~~~~~~------G~~l~--~~~~~~~eiv~~v~~~~-~~pv~vKir~ 178 (306)
.+.+.+.++++.+. .|+|.|||-+. -|. .||- --++. -+.+.+.++++.+++.. ..|+.+-.-.
T Consensus 28 P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~----aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~ 103 (267)
T d1qopa_ 28 PGIEQSLKIIDTLIDAGADALELGVPFSDPL----ADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYA 103 (267)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCSCCT----TCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCccc----ccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeec
Confidence 45678888888765 59999999643 342 1110 00111 25677888898888774 6787665442
Q ss_pred CCChH-HHHHHHHHHHHcCCcEEEEcccC--------------------------C----------CCC-----------
Q psy4398 179 FHNEA-DTIALCKRLEACGIIAIGVHGRT--------------------------K----------AER----------- 210 (306)
Q Consensus 179 g~~~~-~~~~~a~~l~~~G~d~i~v~~~~--------------------------~----------~~~----------- 210 (306)
.+-.. -..++++.+.++|+|++.+-+-. . ...
T Consensus 104 N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvT 183 (267)
T d1qopa_ 104 NLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVT 183 (267)
T ss_dssp HHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCC
T ss_pred cchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchhhhhhcccccC
Confidence 11000 13567777777777777763311 0 000
Q ss_pred ----CCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCC
Q psy4398 211 ----PRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYP 259 (306)
Q Consensus 211 ----~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~ 259 (306)
.....--+.+.++++.+++||+..-||.|++++.++++. |+.+|+|+..
T Consensus 184 G~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk 239 (267)
T d1qopa_ 184 GAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVK 239 (267)
T ss_dssp CSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred CcccccchhHHHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 001123578999999999999999999999999887764 6799999864
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=97.79 E-value=0.00011 Score=62.90 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEcc--CCCccc---cccCCcccccc--CChHHHHHHHHHHHhcccccEEEEecc----
Q psy4398 111 ADPERALEAAKKVEH-DVAAIDINM--GCPKQF---SLTGGMGAALL--STPDIACNILTTLISNLSIPVSCKIRV---- 178 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~-g~d~veln~--gcP~~~---~~~~~~G~~l~--~~~~~~~eiv~~v~~~~~~pv~vKir~---- 178 (306)
.+.+.+.++++.+.+ |+|.|||-+ +.|... ..+ -.--++. .+.+.+.++++.+++....|+.+-...
T Consensus 28 P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~-a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~ 106 (261)
T d1rd5a_ 28 PDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQA-SVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIM 106 (261)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHH-HHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceee-eeeeccccCcchhhhhhhhhcccccccCceeeeeeecchh
Confidence 467889999997764 999999974 445310 000 0000111 356788899999998888887654331
Q ss_pred ----------C------CC--hHHHHHHHHHHHHcCCcEEEEccc-CC--------------------CC----CCC-CC
Q psy4398 179 ----------F------HN--EADTIALCKRLEACGIIAIGVHGR-TK--------------------AE----RPR-HR 214 (306)
Q Consensus 179 ----------g------~~--~~~~~~~a~~l~~~G~d~i~v~~~-~~--------------------~~----~~~-~p 214 (306)
| +| .++..++.+.+.+.|.+.|-+-.. +. .+ ... ..
T Consensus 107 ~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~ 186 (261)
T d1rd5a_ 107 FRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNP 186 (261)
T ss_dssp SCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCT
T ss_pred hHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhhhhhccCcccccccchh
Confidence 1 11 345666777777777777764221 11 00 001 11
Q ss_pred CcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCC
Q psy4398 215 NRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYP 259 (306)
Q Consensus 215 ~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~ 259 (306)
...++++++++.+++||+..-||.++++++++.+. |+.+|++++.
T Consensus 187 ~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~ 234 (261)
T d1rd5a_ 187 RVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR 234 (261)
T ss_dssp HHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 12468899999999999999999999999999986 6799999863
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=97.76 E-value=0.0004 Score=58.49 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=107.2
Q ss_pred CCceEEEecCCC-HHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEe
Q psy4398 101 KNKIILQIGTAD-PERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKI 176 (306)
Q Consensus 101 ~~p~ivql~g~~-~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKi 176 (306)
..|+...+.+.+ .++..++.+.+. .||..+-+.+|. ++++.=.+.++++++.++ ..+.+-.
T Consensus 5 ~ipv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~---------------~~~~~Di~~v~~ir~~~g~~~~l~vDa 69 (243)
T d1nu5a1 5 SIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGA---------------RTPAQDLEHIRSIVKAVGDRASVRVDV 69 (243)
T ss_dssp EEEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSS---------------SCHHHHHHHHHHHHHHHGGGCEEEEEC
T ss_pred ceEEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCC---------------CCHHHHHHHHHHHHHHhCcccceEEEC
Confidence 457777887654 456677777775 499999997653 133444566677777663 4455555
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
..+|+.+++.++++.+++.++.++- ++ ..+.+++..+++++.+++||.+.-.+.+..++..+++.+. .+-
T Consensus 70 N~~~~~~~A~~~~~~l~~~~~~~iE-------eP-~~~~~~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~~~d~~- 140 (243)
T d1nu5a1 70 NQGWDEQTASIWIPRLEEAGVELVE-------QP-VPRANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVDAF- 140 (243)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCCEEE-------CC-SCTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSEE-
T ss_pred CCCccchhHHHHHHHhcchhhhhhh-------hh-hhhccccccccchhccccccccccccccchhhhhcccccccccc-
Confidence 5579999999999999999988773 22 2245788999999999999999999999999999988642 110
Q ss_pred ccCCCC-C----chHHHHHHHHHhcCCCC
Q psy4398 256 NHYPVE-K----LPKTILYAHCKYKRFEV 279 (306)
Q Consensus 256 all~~p-~----~~~~~l~~~~~~~g~~~ 279 (306)
.-|+ . ..-+.+.++.+.+|++.
T Consensus 141 --~~d~~~~GGit~~~~i~~~a~~~gi~~ 167 (243)
T d1nu5a1 141 --SLKLCNMGGIANTLKVAAVAEAAGISS 167 (243)
T ss_dssp --EECHHHHTSHHHHHHHHHHHHHHTCEE
T ss_pred --ccccccccchHHHHHHHHHHHHcCCCc
Confidence 0122 1 11236777788888773
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=97.75 E-value=1.1e-05 Score=69.25 Aligned_cols=89 Identities=13% Similarity=0.183 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+.+.|+|.+++-+-..... ..+.+++.+.++.+.+.+|+...|||++.++++.++..|+ .+|+.++.
T Consensus 30 gdP~~~a~~~~~~g~dei~ivDld~~~~-~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~ 108 (253)
T d1thfd_ 30 GDPVELGKFYSEIGIDELVFLDITASVE-KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp TCHHHHHHHHHHTTCCEEEEEESSCSSS-HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeeccccc-CcccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChHHhh
Confidence 3578999999999999999866543211 1234788999999999999999999999999999999986 99999999
Q ss_pred CCCchHHHHHHHHHhcC
Q psy4398 260 VEKLPKTILYAHCKYKR 276 (306)
Q Consensus 260 ~p~~~~~~l~~~~~~~g 276 (306)
||.+. +++.++.|
T Consensus 109 n~~~l----~~~~~~~G 121 (253)
T d1thfd_ 109 NPSLI----TQIAQTFG 121 (253)
T ss_dssp CTHHH----HHHHHHHC
T ss_pred ChHHH----HHHHHHcC
Confidence 88543 34455555
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=0.00033 Score=59.38 Aligned_cols=147 Identities=11% Similarity=0.070 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc--C-CChHHHH-HHH
Q psy4398 115 RALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV--F-HNEADTI-ALC 189 (306)
Q Consensus 115 ~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~--g-~~~~~~~-~~a 189 (306)
...++...++.|+|.||+=+ .||.....+.+.+.+-++++++.+ ..++.+|+=+ + .+.++.+ ..+
T Consensus 86 K~~E~~~Ai~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~ 155 (250)
T d1p1xa_ 86 ALAETRAAIAYGADEVDVVF----------PYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKAS 155 (250)
T ss_dssp HHHHHHHHHHHTCSEEEEEC----------CHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEee----------cchhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHH
Confidence 34555555667999999832 133333445567777777777655 2345555443 2 2334444 566
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-------CCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCC
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-------KIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVE 261 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-------~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p 261 (306)
+.+.++|+|+|--+.. ...+....+.+..+++.+ ++.|=++|||+|.+++.++++.|. .+|...+ +|
T Consensus 156 ~ia~~aGadFvKTSTG----~~~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ga~~iG~~~~-~~ 230 (250)
T d1p1xa_ 156 EISIKAGADFIKTSTG----KVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWA-DA 230 (250)
T ss_dssp HHHHHTTCSEEECCCS----CSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHHHHCTTSC-ST
T ss_pred HHHHHcCcCeEEecCC----cCCCCCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHHHHHHhCcccc-cc
Confidence 8889999999975322 222223444443333322 588999999999999999999988 6888765 56
Q ss_pred CchHH----HHHHHHHhcC
Q psy4398 262 KLPKT----ILYAHCKYKR 276 (306)
Q Consensus 262 ~~~~~----~l~~~~~~~g 276 (306)
..-++ .|+.+.++.|
T Consensus 231 ~~fRiGaSs~l~~l~~~l~ 249 (250)
T d1p1xa_ 231 RHYRFGASSLLASLLKALG 249 (250)
T ss_dssp TTBCEEESTHHHHHHHHHT
T ss_pred CceeeeHHHHHHHHHHHhc
Confidence 33222 4555555443
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.68 E-value=1.7e-05 Score=68.01 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++|+.+++.|+|.+++.+....... .+.+++.++++.+.+.+|+...|||++.++++.++..|+ .+|+..+.|
T Consensus 33 dP~~~a~~~~~~gadei~ivDl~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~ 111 (252)
T d1h5ya_ 33 DPVEMAVRYEEEGADEIAILDITAAPEG-RATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN 111 (252)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTTT-HHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHC
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccccc-cccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEecccccCC
Confidence 4788999999999999998765543221 234788999999999999999999999999999999876 999999988
Q ss_pred CCchH
Q psy4398 261 EKLPK 265 (306)
Q Consensus 261 p~~~~ 265 (306)
|.+.+
T Consensus 112 ~~~~~ 116 (252)
T d1h5ya_ 112 PQLVA 116 (252)
T ss_dssp THHHH
T ss_pred cchHH
Confidence 85443
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=97.68 E-value=0.00071 Score=56.89 Aligned_cols=127 Identities=18% Similarity=0.239 Sum_probs=94.9
Q ss_pred CCceEEEecCCCHHH-HHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEe
Q psy4398 101 KNKIILQIGTADPER-ALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKI 176 (306)
Q Consensus 101 ~~p~ivql~g~~~~~-~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 176 (306)
..|+...+...++++ ..++.+.++ .||..+-|.+|-+ +.+.=.+.++++++.+ +..+.+-.
T Consensus 5 ~ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~---------------~~~~Di~~i~~ir~~~g~~~~l~vDa 69 (242)
T d1muca1 5 SLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGAN---------------PVEQDLKHVVTIKRELGDSASVRVDV 69 (242)
T ss_dssp EEEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEEC
T ss_pred eEEEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECCC---------------CHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 357777777666554 567777776 4999999987632 2333345566677666 35566666
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
..+|+.+++.++++.+++.|+.++- ++. .+.+++..+++++.+++||.+.-.+.+..++.++++.+
T Consensus 70 N~~~~~~~A~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~L~~~~~~pIa~~E~~~~~~~~~~~i~~~ 135 (242)
T d1muca1 70 NQYWDESQAIRACQVLGDNGIDLIE-------QPI-SRINRGGQVRLNQRTPAPIMADESIESVEDAFSLAADG 135 (242)
T ss_dssp TTCBCHHHHHHHHHHHHHTTCCCEE-------CCB-CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHhhhhhHHHhh-------cch-hhhhhhhhhhhhhhhhheeecccccccccchhhhhhcc
Confidence 6679999999999999999988762 222 34578899999999999999999999999999998763
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=97.67 E-value=1.5e-05 Score=68.23 Aligned_cols=90 Identities=9% Similarity=0.162 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+.+.|+|.+++.+-...... .+.++++++.+.+.+.+|+...|||+|.++++.++..|+ .+|+..+.
T Consensus 30 gdP~~~a~~~~~~g~dei~iiDl~~~~~~-~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~ 108 (251)
T d1ka9f_ 30 GDPVEAARAYDEAGADELVFLDISATHEE-RAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 108 (251)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSSTTC-HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeccccccc-chhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchhhh
Confidence 35789999999999999998765443222 134788999999999999999999999999999999986 99999999
Q ss_pred CCCchHHHHHHHHH
Q psy4398 260 VEKLPKTILYAHCK 273 (306)
Q Consensus 260 ~p~~~~~~l~~~~~ 273 (306)
||.+.+...+.|-.
T Consensus 109 n~~~i~~~~~~~G~ 122 (251)
T d1ka9f_ 109 RPELIRELADHFGA 122 (251)
T ss_dssp CTHHHHHHHHHHCG
T ss_pred CHHHHHHHHHhhcc
Confidence 98665544444433
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=97.63 E-value=0.00027 Score=68.54 Aligned_cols=96 Identities=13% Similarity=0.035 Sum_probs=68.6
Q ss_pred CChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC--------CCCCcHHHHHH
Q psy4398 152 STPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP--------RHRNRIEMIRT 222 (306)
Q Consensus 152 ~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--------~~p~~~~~v~~ 222 (306)
..++.+.++|..+|+.. +.||.||+-.+.. ...++..+.++|+|.|+|+|....... .+-+...-+.+
T Consensus 553 ~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~---~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~ 629 (771)
T d1ea0a2 553 YSIEDLAQLIYDLKQINPDAKVTVKLVSRSG---IGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSE 629 (771)
T ss_dssp SSHHHHHHHHHHHHHHCTTCEEEEEEECCTT---HHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEECCcCc---HHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHH
Confidence 36788999999999877 8999999985433 456666777899999999886533221 12222223344
Q ss_pred HHhhC-------CCcEEEecCCCCHHHHHHHHHhh
Q psy4398 223 LTQHL-------KIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 223 i~~~~-------~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
+.+.+ ++.+++.||+.+..|+-.++..|
T Consensus 630 ~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLG 664 (771)
T d1ea0a2 630 VHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLG 664 (771)
T ss_dssp HHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhC
Confidence 44432 58999999999999998888754
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=97.58 E-value=0.0017 Score=54.07 Aligned_cols=128 Identities=10% Similarity=0.139 Sum_probs=94.7
Q ss_pred CceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEecc
Q psy4398 102 NKIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRV 178 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~ 178 (306)
.++..-++-.+|+++.+.++.+. +||..+-+.+|.+ +.+.-.+.++++|+.++ +.+.+-...
T Consensus 5 v~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~---------------~~~~d~~~i~~ir~~~g~~~~i~vD~N~ 69 (234)
T d1jpma1 5 LETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD---------------DIATDIARIQEIRKRVGSAVKLRLDANQ 69 (234)
T ss_dssp EEBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred ceEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCCC---------------CHHHHHHHHHHHHHHcCchhhhhhhccc
Confidence 34555666678999988888665 5999999987642 23344566777777764 344444555
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
+|+.+++.++++.+++.+.+..-+-. +. .+.+++..+++++..++||.....+.+..+..++++.+
T Consensus 70 ~~~~~~a~~~~~~le~~~~~i~~~Ee-----P~-~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~i~~~ 135 (234)
T d1jpma1 70 GWRPKEAVTAIRKMEDAGLGIELVEQ-----PV-HKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTR 135 (234)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEEEEC-----CS-CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHhccCceeeecC-----Cc-cccCHHHHHHhhccccceeecccccccchhhhhhhccC
Confidence 78999999999999998776444421 22 24588999999999999999988899999999988763
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.56 E-value=0.00073 Score=56.69 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC-CChHHHHHHHHHHH
Q psy4398 115 RALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF-HNEADTIALCKRLE 193 (306)
Q Consensus 115 ~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g-~~~~~~~~~a~~l~ 193 (306)
...++...++.|+|.||+=+ + +|.......+.+.++++..++ .+.++-|-+-.+ .+.++....++...
T Consensus 90 k~~E~~~Ai~~GAdEID~Vi---n-------~~~~~~~~~~ev~~~~~~~~~-~g~~lKVIlEt~~L~~~~i~~a~~~a~ 158 (234)
T d1n7ka_ 90 KLVEAQTVLEAGATELDVVP---H-------LSLGPEAVYREVSGIVKLAKS-YGAVVKVILEAPLWDDKTLSLLVDSSR 158 (234)
T ss_dssp HHHHHHHHHHHTCCEEEECC---C-------GGGCHHHHHHHHHHHHHHHHH-TTCEEEEECCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEe---c-------hhhhhhhhHHHHHHHHHHHhc-cCceEEEEEeccccchHHHHHHHHHHH
Confidence 34555555567999999842 2 222222233455666665543 355544444432 46677889999999
Q ss_pred HcCCcEEEEcccCCCCCCCCCCcHHHH---HHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 194 ACGIIAIGVHGRTKAERPRHRNRIEMI---RTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 194 ~~G~d~i~v~~~~~~~~~~~p~~~~~v---~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
++|+|+|--+- +.+........+ .+.....++.|=++|||+|.+++.+++++|+ -+|+
T Consensus 159 ~aGadFVKTST----G~~~~gat~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~aGa~rIGt 220 (234)
T d1n7ka_ 159 RAGADIVKTST----GVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGADIIGT 220 (234)
T ss_dssp HTTCSEEESCC----SSSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred Hhhhhheeecc----cccCCCCCHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHHccCceeec
Confidence 99999997432 222222232333 3333333689999999999999999999876 5555
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=97.52 E-value=0.00031 Score=60.28 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCc------ccccc--CChHHHHHHHHHHHhcccccEEEEeccCCCh
Q psy4398 111 ADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGM------GAALL--STPDIACNILTTLISNLSIPVSCKIRVFHNE 182 (306)
Q Consensus 111 ~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~------G~~l~--~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~ 182 (306)
.+.+.+.++.+.+..|+|.|||-+.- +....||- --++. -+.+.+.++++.+|+....|+.+=....+-.
T Consensus 27 P~~~~~~~~l~~l~~gaDiiElGiPf--SDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~ 104 (271)
T d1ujpa_ 27 PSREGFLQAVEEVLPYADLLEIGLPY--SDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVL 104 (271)
T ss_dssp SCHHHHHHHHHHHGGGCSSEEEECCC--CC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCEEEeCCCC--CCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEEEeechhhh
Confidence 36678888888776799999996442 21111210 00121 2677888999999988888887765521100
Q ss_pred H-HHHHHHHHHHHcCCcEEEEcccC--------------------------C----------CCCC--------------
Q psy4398 183 A-DTIALCKRLEACGIIAIGVHGRT--------------------------K----------AERP-------------- 211 (306)
Q Consensus 183 ~-~~~~~a~~l~~~G~d~i~v~~~~--------------------------~----------~~~~-------------- 211 (306)
. ...++++.+.++|+|++.+-+-. . ...+
T Consensus 105 ~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~ 184 (271)
T d1ujpa_ 105 AWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRE 184 (271)
T ss_dssp HHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC--------
T ss_pred hCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchHHHHHHHHhCcchhhhhcccCccCccc
Confidence 1 13567777777777777753211 0 0000
Q ss_pred -CCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--hhhhccccC
Q psy4398 212 -RHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL--NCAFLRNHY 258 (306)
Q Consensus 212 -~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~--~v~vGrall 258 (306)
....-.+.+.++++.+++||+..=||.+.+++..+ +. |+.||++++
T Consensus 185 ~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~-~~ADGvIVGSAiV 233 (271)
T d1ujpa_ 185 RLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA-AVADGVVVGSALV 233 (271)
T ss_dssp ----CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH-TTSSEEEECHHHH
T ss_pred cchHHHHHHHHhhhccccCCeEEeCCCCCHHHHHHh-CCCCEEEEcHHHH
Confidence 01123578899999999999999999999999865 32 779999985
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=97.46 E-value=0.0027 Score=52.60 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=103.1
Q ss_pred cCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHH
Q psy4398 109 GTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADT 185 (306)
Q Consensus 109 ~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~ 185 (306)
...+++...+-++.+. .||..+-+..|.+. .+.-.+.++++|+.+ +..+.+-...+|+.+++
T Consensus 9 ~~d~~~~~~e~~~~~~~~G~~~~KikvG~~~---------------~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A 73 (227)
T d2mnra1 9 SLDGVKLATERAVTAAELGFRAVKTKIGYPA---------------LDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAA 73 (227)
T ss_dssp CSCHHHHHHHHHHHHHHTTCSEEEEECCCSS---------------HHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCCEEEEccCCCC---------------HHHHHHHHHHHHHHhCCCcEEEEeccccCChHHH
Confidence 3455667676666554 59999999876432 233345677777776 34566655557999999
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhhhhccccCCCC-Cc-
Q psy4398 186 IALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVE-KL- 263 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v~vGrall~~p-~~- 263 (306)
.++++.+++.|+.++- ++. .+.+++..+++++.+++||.+.-.+.+.++..++++.+.. ..+.-++ .+
T Consensus 74 ~~~~~~l~~~~~~~iE-------eP~-~~~~~~~~~~l~~~~~ipia~gE~~~~~~~~~~~~~~~~~--d~~~~d~~~~G 143 (227)
T d2mnra1 74 IKRSQALQQEGVTWIE-------EPT-LQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGAC--RLAMPDAMKIG 143 (227)
T ss_dssp HHHHHHHHHHTCSEEE-------CCS-CTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCC--SEECCBTTTTT
T ss_pred HHHHHHhhhchhhhhc-------Ccc-cccchhhhHHHHHHcCCccccCceeEeechhhhhHhcCce--eeeeccccccc
Confidence 9999999999998884 222 2457899999999999999888889999999999886430 0111122 12
Q ss_pred ---hHHHHHHHHHhcCCCCCc
Q psy4398 264 ---PKTILYAHCKYKRFEVPK 281 (306)
Q Consensus 264 ---~~~~l~~~~~~~g~~~~~ 281 (306)
.-+.+.++.+++|+++..
T Consensus 144 Git~~~~i~~~a~~~g~~~~~ 164 (227)
T d2mnra1 144 GVTGWIRASALAQQFGIPMSS 164 (227)
T ss_dssp HHHHHHHHHHHHHHHTCCBCC
T ss_pred chhhHHHHHHHHHHcCCcccc
Confidence 123667778888887443
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=0.0004 Score=57.08 Aligned_cols=143 Identities=13% Similarity=0.132 Sum_probs=84.0
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc-----ccc---C--CccccccCChHHHHHHHHHHHhcccc
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF-----SLT---G--GMGAALLSTPDIACNILTTLISNLSI 170 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~-----~~~---~--~~G~~l~~~~~~~~eiv~~v~~~~~~ 170 (306)
.|++.=|.+.++++..+.++.+.+ |+..+|+.+-+|+.. .++ . ..|..-..+++.+.+.+++ +.
T Consensus 9 ~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~a-----Ga 83 (202)
T d1wa3a1 9 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVES-----GA 83 (202)
T ss_dssp HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHH-----TC
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhh-----cc
Confidence 367777889999999999997765 899999999888631 000 0 0121111233333333222 12
Q ss_pred cEEEEeccCCChH-----------------HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEE
Q psy4398 171 PVSCKIRVFHNEA-----------------DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVI 232 (306)
Q Consensus 171 pv~vKir~g~~~~-----------------~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvi 232 (306)
.+.| +++.+.+ +.-|+ ..+.++|++.+-+..-.. .+ ..+++.++.-+ ++|+|
T Consensus 84 ~fiv--sP~~~~~v~~~~~~~~i~~iPGv~TpsEi-~~A~~~G~~~lK~fPa~~----~G---~~~lk~l~~p~p~i~~i 153 (202)
T d1wa3a1 84 EFIV--SPHLDEEISQFCKEKGVFYMPGVMTPTEL-VKAMKLGHTILKLFPGEV----VG---PQFVKAMKGPFPNVKFV 153 (202)
T ss_dssp SEEE--CSSCCHHHHHHHHHHTCEEECEECSHHHH-HHHHHTTCCEEEETTHHH----HH---HHHHHHHHTTCTTCEEE
T ss_pred cEEe--CCCCcHHHHHHHHhcCCceeCCcCcHHHH-HHHHHCCCCEEEecchhh----cC---HHHHHHHhCcccCCcEE
Confidence 2221 2222210 11122 222345555555542110 11 26788888877 79999
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
.+||| |.+++.+.++.++ .+|++|+.+
T Consensus 154 ptGGI-~~~n~~~~l~aga~avg~Gs~l~~~ 183 (202)
T d1wa3a1 154 PTGGV-NLDNVCEWFKAGVLAVGVGSALVKG 183 (202)
T ss_dssp EBSSC-CTTTHHHHHHHTCSCEEECHHHHCS
T ss_pred eeCCC-CHHHHHHHHHCCCeEEEEchhhcCC
Confidence 99999 6899999998865 778888863
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=97.45 E-value=5.2e-05 Score=66.99 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCC--CCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHH-----------HHHHHHh
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTK--AERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVD-----------YGGVFSL 249 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~--~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~-----------~~~~l~~ 249 (306)
.+.+++|+.+.+.|||.|++-+... .+.+.....++.++++++.+.+||...|||+|+++ |+.+++.
T Consensus 48 GdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~ 127 (323)
T d1jvna1 48 GKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRS 127 (323)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHHHc
Confidence 3789999999999999999865432 23333334689999999999999999999999755 6788888
Q ss_pred hh---hhccccCCCCC-chHH--------HHHHHHHhcC
Q psy4398 250 NC---AFLRNHYPVEK-LPKT--------ILYAHCKYKR 276 (306)
Q Consensus 250 ~v---~vGrall~~p~-~~~~--------~l~~~~~~~g 276 (306)
|+ .+|++.+.+|. +.+. -++++.++-|
T Consensus 128 GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i~~~fG 166 (323)
T d1jvna1 128 GADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYG 166 (323)
T ss_dssp TCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHC
T ss_pred CCCeEEechHHhhChHHHHHHHhhcccchhHHHHHHHhC
Confidence 87 99999887763 2221 4566677766
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.40 E-value=0.00015 Score=59.86 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=61.3
Q ss_pred HHHHHHHcCCcEEEEcccCCC--CCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCC
Q psy4398 188 LCKRLEACGIIAIGVHGRTKA--ERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEK 262 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~--~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~ 262 (306)
-++.+.+.|+|++.+...... .....|..++.++++.+..++||+|-||| +.+++.++++. |+++.++++..+.
T Consensus 111 e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~~~Pv~AiGGI-~~~ni~~~~~~Ga~gvAvis~I~~~~d 189 (206)
T d1xi3a_ 111 EALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGI-NKDNAREVLKTGVDGIAVISAVMGAED 189 (206)
T ss_dssp HHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSC-CTTTHHHHHTTTCSEEEESHHHHTSSS
T ss_pred HHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHhCCCEEEEhHHHHCCCC
Confidence 345567789999999875322 12234678999999999999999999998 57788888887 4599999886443
Q ss_pred chH--HHHHHHHHh
Q psy4398 263 LPK--TILYAHCKY 274 (306)
Q Consensus 263 ~~~--~~l~~~~~~ 274 (306)
..+ ..+.+.+++
T Consensus 190 p~~~~~~l~~~~~~ 203 (206)
T d1xi3a_ 190 VRKATEELRKIVEE 203 (206)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 222 255555543
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=97.35 E-value=0.0007 Score=65.79 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=66.9
Q ss_pred ChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCC--------CCCCcHHHHHHH
Q psy4398 153 TPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERP--------RHRNRIEMIRTL 223 (306)
Q Consensus 153 ~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~--------~~p~~~~~v~~i 223 (306)
.++.+.++|..+|+.. +.||.||+-.... ...++..+.++|+|.|+|+|....... .+-+...-+.++
T Consensus 581 siedL~q~I~~Lr~~~~~~pv~vKl~~~~g---~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~a 657 (809)
T d1ofda2 581 SIEDLAQLIYDLHQINPEAQVSVKLVAEIG---IGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEV 657 (809)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEEEEEECSTT---HHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeecC---hHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHHH
Confidence 6888999999999876 6899999985333 345666666799999999886533221 222222233444
Q ss_pred HhhC-------CCcEEEecCCCCHHHHHHHHHhh
Q psy4398 224 TQHL-------KIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 224 ~~~~-------~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
.+.+ ++.+|+.||+.+..|+-.++..|
T Consensus 658 ~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLG 691 (809)
T d1ofda2 658 HRVLMENQLRDRVLLRADGGLKTGWDVVMAALMG 691 (809)
T ss_dssp HHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTT
T ss_pred HHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhC
Confidence 3332 58999999999999998888754
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.31 E-value=7.6e-05 Score=63.15 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++|+.+.+.|+|.|++-+-.... ..+.+.+.++.+.+.+.+|+...|||+|.++++.+++.|+ .+|+..+.+
T Consensus 32 dP~~~a~~~~~~ga~~l~i~DLd~~~--~~~~~~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~ 109 (239)
T d1vzwa1 32 SPLEAALAWQRSGAEWLHLVDLDAAF--GTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET 109 (239)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHH--TSCCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEEeecccc--cccchHHHHHHHHhhcCcceEeecccccchhhhhhhccccccchhhHHhhhc
Confidence 57899999999999999986543221 1235789999999999999999999999999999999976 889988888
Q ss_pred CCchHHHHHHH
Q psy4398 261 EKLPKTILYAH 271 (306)
Q Consensus 261 p~~~~~~l~~~ 271 (306)
|.+.+...+.|
T Consensus 110 ~~~~~~~~~~~ 120 (239)
T d1vzwa1 110 PEWVAKVIAEH 120 (239)
T ss_dssp HHHHHHHHHHH
T ss_pred cccchhhhccC
Confidence 85554444444
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.0048 Score=52.96 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=91.4
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
.+.|+.+++-+.. ++..+.+.+..||+-|.+..+. ..+.++.+...++++.... .+++|-.-+..
T Consensus 72 ~~vpV~lHlDH~~--~~e~i~~ai~~GftSVMiD~S~-----------lp~eeNi~~t~~vv~~ah~-~gv~VE~ElG~v 137 (284)
T d1gvfa_ 72 YNMPLALHLDHHE--SLDDIRRKVHAGVRSAMIDGSH-----------FPFAENVKLVKSVVDFCHS-QDCSVEAELGRL 137 (284)
T ss_dssp TTSCBEEEEEEEC--CHHHHHHHHHTTCCEEEECCTT-----------SCHHHHHHHHHHHHHHHHH-TTCEEEEEESCC
T ss_pred cCCeEEeeecccc--chHHHHHHHhcCCCeEEEECCC-----------CCHHHHHHHHHHHHHHHHh-hccceeeeeeee
Confidence 4577888876543 2333334455688888886552 1244567777788777654 46777766664
Q ss_pred CC-------C-----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC--CcHHHHHHHHhhCCCcEEEecCCCC-HHHH
Q psy4398 179 FH-------N-----EADTIALCKRLEACGIIAIGVHGRTKAERPRHR--NRIEMIRTLTQHLKIPVIANGGSKE-IVDY 243 (306)
Q Consensus 179 g~-------~-----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p--~~~~~v~~i~~~~~ipvia~GGI~s-~~~~ 243 (306)
+. + ..+..+..+-+++.|+|.|-+.=.+..+.|.+. .+++.+++|++.+++|++..||-.. -++.
T Consensus 138 ~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~~vPLVlHGgSG~~~e~i 217 (284)
T d1gvfa_ 138 GGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFV 217 (284)
T ss_dssp C-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHH
T ss_pred ccccccccccccccccCCHHHHHHHHHHhCCCEEeeecCceeeccCCCCccccchhhhhhccccCCeEeeCCCCCCHHHH
Confidence 10 0 122445555566789999998766655555443 4779999999999999999999775 4556
Q ss_pred HHHHHhhh
Q psy4398 244 GGVFSLNC 251 (306)
Q Consensus 244 ~~~l~~~v 251 (306)
+++++.|+
T Consensus 218 ~~ai~~Gi 225 (284)
T d1gvfa_ 218 RRTIELGV 225 (284)
T ss_dssp HHHHHTTE
T ss_pred HHHHHcCe
Confidence 77777765
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=97.11 E-value=0.005 Score=51.27 Aligned_cols=148 Identities=9% Similarity=0.121 Sum_probs=103.3
Q ss_pred CCceEEEec-CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEe
Q psy4398 101 KNKIILQIG-TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKI 176 (306)
Q Consensus 101 ~~p~ivql~-g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 176 (306)
..|+-+++. +.+++++.+.++... +||..+-|.++ | ..+. +.++++++.+ +..+.+-.
T Consensus 4 ~ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg-~-------------~~Di----~~i~~ir~~~g~~~~l~vDa 65 (242)
T d1sjda1 4 SVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE-P-------------GWDV----EPVRAVRERFGDDVLLQVDA 65 (242)
T ss_dssp EEEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB-T-------------TBSH----HHHHHHHHHHCTTSEEEEEC
T ss_pred eeEeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECC-c-------------hhHH----HHHHHHHHHhCCCeeEeecc
Confidence 457888886 468999888777664 59999999764 1 1243 4456666665 34555555
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
..+|+.+++.++++ +++.++.+|- ++. .+.+++..+++++.+++||.+.-.+.+..++.++++.+. .+-.
T Consensus 66 N~~~~~~~a~~~~~-l~~~~~~~iE-------eP~-~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~~~~~~~d~~~ 136 (242)
T d1sjda1 66 NTAYTLGDAPQLAR-LDPFGLLLIE-------QPL-EEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVN 136 (242)
T ss_dssp TTCCCGGGHHHHHT-TGGGCCSEEE-------CCS-CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEE
T ss_pred ccccchhhhhHHhh-hhhhhhHHHH-------hhh-hhhhHHHHHHHHhccCcccccccccccchhhhhhhhcCccCEEE
Confidence 55789999999987 8889988774 222 345788899999999999988888999999999998642 1111
Q ss_pred ccCCCC-C---chH-HHHHHHHHhcCCC
Q psy4398 256 NHYPVE-K---LPK-TILYAHCKYKRFE 278 (306)
Q Consensus 256 all~~p-~---~~~-~~l~~~~~~~g~~ 278 (306)
-|+ . +.. +.+.+..+++|++
T Consensus 137 ---~d~~~~GGit~~~~i~~~A~~~~i~ 161 (242)
T d1sjda1 137 ---IKPGRVGGYLEARRVHDVCAAHGIP 161 (242)
T ss_dssp ---ECTTTTTSHHHHHHHHHHHHHTTCC
T ss_pred ---eccccCccchhhhHHHHHHHHCCCE
Confidence 122 1 112 3666777777777
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=97.09 E-value=0.0061 Score=52.85 Aligned_cols=138 Identities=9% Similarity=0.078 Sum_probs=89.7
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV- 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~- 178 (306)
...|+.+.|-+.. ++..+.+.++.||+-|.+..+. ..+.++.+...++++..+. .+++|-.-+..
T Consensus 71 ~~vpv~lHlDH~~--~~e~i~~ai~~GftSVMiDgS~-----------l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i 136 (305)
T d1rvga_ 71 ARVPVAVHLDHGS--SYESVLRALRAGFTSVMIDKSH-----------EDFETNVRETRRVVEAAHA-VGVTVEAELGRL 136 (305)
T ss_dssp CSSCEEEEEEEEC--SHHHHHHHHHTTCSEEEECCTT-----------SCHHHHHHHHHHHHHHHHH-TTCEEEEEESCC
T ss_pred cCCcEEEeehhcc--ChhhhHHHHhcCCceEEEcCcc-----------ccHHHHHHHHHHHHHHhch-hceeEEeeeeee
Confidence 3456666665432 2333334445688888875442 2355677788888877765 47777777664
Q ss_pred C-C------C-----hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC----CCcHHHHHHHHhhCCCcEEEecCC-----
Q psy4398 179 F-H------N-----EADTIALCKRLEACGIIAIGVHGRTKAERPRH----RNRIEMIRTLTQHLKIPVIANGGS----- 237 (306)
Q Consensus 179 g-~------~-----~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~----p~~~~~v~~i~~~~~ipvia~GGI----- 237 (306)
| . + ..+..+..+-+++.|+|.|-+.=.+..+.|.+ ..+++.+++|++.+++|++..||-
T Consensus 137 gg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~~~PLVlHGgS~vp~~ 216 (305)
T d1rvga_ 137 AGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPE 216 (305)
T ss_dssp CCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHH
T ss_pred ecccccccccccccccCCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhccCCCeeccCCccccHH
Confidence 1 1 0 11234444445678999999865555555533 268899999999999999999974
Q ss_pred -----------------CCHHHHHHHHHhhh
Q psy4398 238 -----------------KEIVDYGGVFSLNC 251 (306)
Q Consensus 238 -----------------~s~~~~~~~l~~~v 251 (306)
.+.++.+++++.|+
T Consensus 217 ~~~~~~~~g~~lhg~sG~~~e~i~~ai~~GV 247 (305)
T d1rvga_ 217 LVERFRASGGEIGEAAGIHPEDIKKAISLGI 247 (305)
T ss_dssp HHHHHHHTTCCCCSCBCCCHHHHHHHHHTTE
T ss_pred HHhhhcccCcccCCCCCCCHHHHHHHHHcCe
Confidence 23677888888876
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=97.04 E-value=0.017 Score=48.66 Aligned_cols=159 Identities=16% Similarity=0.216 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcc-cccccccCCCCCceeeecCCCCCCceEEEe----cCCCHHH
Q psy4398 41 MNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL-LNTIDFVDPLDGSVVFRTCPREKNKIILQI----GTADPER 115 (306)
Q Consensus 41 ~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~p~ivql----~g~~~~~ 115 (306)
..|.++..++.++|++++.+.-....-. .+...+.+. +..+-+- -+...+.. ...-+++.+ ...+.++
T Consensus 22 ayd~~~A~~ae~agiDiilVGDSlgm~~-~G~~~T~~vt~d~mi~h----~~aV~rga--~~~~~i~dmPf~sy~~~~~~ 94 (260)
T d1o66a_ 22 AYESSFAALMDDAGVEMLLVGDSLGMAV-QGRKSTLPVSLRDMCYH----TECVARGA--KNAMIVSDLPFGAYQQSKEQ 94 (260)
T ss_dssp CCSHHHHHHHHHTTCCEEEECTTHHHHT-TCCSSSTTCCHHHHHHH----HHHHHHHC--SSSEEEEECCTTSSSSCHHH
T ss_pred CCCHHHHHHHHHcCCCEEEEcCCchhee-cCCCCccccchhhhhhh----hHHHHccC--cceeeecchhhhhhcchhHH
Confidence 4678888889899999998863211000 000000000 0000000 00000111 122344454 2356677
Q ss_pred HHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccC---------------
Q psy4398 116 ALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVF--------------- 179 (306)
Q Consensus 116 ~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g--------------- 179 (306)
..+++.++. .|+|+|-+..+. ...++++++.+ .++||.-=+..-
T Consensus 95 ~~~a~~~~~~~gadavk~eg~~-------------------~~~~~i~~l~~-~gIPV~gHiGl~Pq~~~~~gG~r~~Gk 154 (260)
T d1o66a_ 95 AFAAAAELMAAGAHMVKLEGGV-------------------WMAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYKVQGR 154 (260)
T ss_dssp HHHHHHHHHHTTCSEEEEECSG-------------------GGHHHHHHHHH-TTCCEEEEEESCGGGTTC---------
T ss_pred HHHHHHHHHHhhhhhccccchh-------------------hhhHHHHHHHH-cCCeeEeecccccchheecCcceeccc
Confidence 788877665 599999995332 12446666665 388988766541
Q ss_pred -CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 180 -HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 180 -~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
.+.....+.|+.++++||.++.+.+.. -++.++|.+.+++|+|+-|.
T Consensus 155 ~~e~~~l~~~a~~le~AGa~~ivlE~Vp----------~~va~~It~~~~iptIgIGa 202 (260)
T d1o66a_ 155 GGKAQALLNDAKAHDDAGAAVVLMECVL----------AELAKKVTETVSCPTIGIGA 202 (260)
T ss_dssp --CHHHHHHHHHHHHHTTCSEEEEESCC----------HHHHHHHHHHCSSCEEEESS
T ss_pred cchhHHHHHHHHHHHHhhhhehhhhhcc----------HHHHHHHHhhhcceeeeccC
Confidence 122347889999999999999997642 26889999999999998886
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.01 E-value=0.00084 Score=55.71 Aligned_cols=142 Identities=13% Similarity=0.217 Sum_probs=94.0
Q ss_pred ceEEEecCCCHHHHHHHHHHHhc-CCCEEEEcc----CCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 103 KIILQIGTADPERALEAAKKVEH-DVAAIDINM----GCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~----gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
++..+|...+...+.+..+.++. |+|.+-+-+ -+|+. .+| + +.++.+++....|+.|-+=
T Consensus 3 kIspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~-----s~g------~----~~i~~i~~~t~~~~dvHLM 67 (217)
T d2flia1 3 KIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNI-----SFG------A----DVVASMRKHSKLVFDCHLM 67 (217)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCB-----CBC------H----HHHHHHHTTCCSEEEEEEE
T ss_pred EEEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCcc-----ccC------H----HHHHHHHhcCCCceEeEEE
Confidence 46778888888888888887764 899776643 24542 122 2 4567888878888888765
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCC---------------------------------------------CCCCC
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTK---------------------------------------------AERPR 212 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---------------------------------------------~~~~~ 212 (306)
. .+ ..++++.+.++|+|.|++|.-.. ..++.
T Consensus 68 v-~~---P~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~pG~~ 143 (217)
T d2flia1 68 V-VD---PERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFG 143 (217)
T ss_dssp S-SS---GGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCS
T ss_pred e-cC---HHHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEcCccc
Confidence 3 12 23456677778888888864210 11111
Q ss_pred C----CCcHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCCch
Q psy4398 213 H----RNRIEMIRTLTQHL-----KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEKLP 264 (306)
Q Consensus 213 ~----p~~~~~v~~i~~~~-----~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~~~ 264 (306)
+ +..++-++++++.. +++|..=|||+ .+++.++.++|+ .+|++++..+...
T Consensus 144 Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~aGad~~V~Gsaif~~~d~~ 206 (217)
T d2flia1 144 GQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKASDLV 206 (217)
T ss_dssp SCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCHH
T ss_pred ccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEEchHHhCCCCHH
Confidence 1 23456666666432 57899999997 568888888876 9999999866433
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=96.98 E-value=0.0089 Score=50.26 Aligned_cols=152 Identities=12% Similarity=0.114 Sum_probs=100.6
Q ss_pred CCceEEEecC--CCHHH---HHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccE
Q psy4398 101 KNKIILQIGT--ADPER---ALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPV 172 (306)
Q Consensus 101 ~~p~ivql~g--~~~~~---~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv 172 (306)
..|+..++.+ .++++ +.+-++.. +.||..+-+.+|- .+++.-.+.++++|+.+ +..+
T Consensus 5 ~ip~Yas~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avr~~~G~~~~l 69 (256)
T d2gdqa1 5 EIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGG---------------TSFKEDVRHINALQHTAGSSITM 69 (256)
T ss_dssp EEEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHHCTTSEE
T ss_pred eEEeCeecCcCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC---------------CCHHHHHHHHHHHHHHcCCCeEE
Confidence 3566666543 23333 44334433 3599999997652 12444456778888877 4567
Q ss_pred EEEeccCCChHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 173 SCKIRVFHNEADTIALCKRLEAC-GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~-G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
.+-...+|+.+++.++++.+++. ++.++- ++ ..+.+++-.+++++.+++||.+.=.+.+.+++.++++.+.
T Consensus 70 ~vDan~~~~~~~A~~~~~~l~~~~~i~~~E-------eP-~~~~d~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~a 141 (256)
T d2gdqa1 70 ILDANQSYDAAAAFKWERYFSEWTNIGWLE-------EP-LPFDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRC 141 (256)
T ss_dssp EEECTTCCCHHHHHTTHHHHTTCSCEEEEE-------CC-SCSSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTC
T ss_pred eeccccCCCHHHHHHHHHHHhhcCceeEec-------cc-cccchHHHHHHHhhcccceeecCccccchhhHHHHHHhhc
Confidence 77766679999999999999874 555553 12 2245888999999999999987777999999999988632
Q ss_pred hhccccCC--CC-Cc----hHHHHHHHHHhcCCCC
Q psy4398 252 AFLRNHYP--VE-KL----PKTILYAHCKYKRFEV 279 (306)
Q Consensus 252 ~vGrall~--~p-~~----~~~~l~~~~~~~g~~~ 279 (306)
.-+- |+ .+ .-+.+.+..+.+|+++
T Consensus 142 ----~di~~~d~~~~GGit~~~~i~~~a~~~~i~v 172 (256)
T d2gdqa1 142 ----LDIIQPDVMHVNGIDEFRDCLQLARYFGVRA 172 (256)
T ss_dssp ----CSEECCCTTTTTHHHHHHHHHHHHHHHTCEE
T ss_pred ----ceeeeccccccccHHHHHHHHHHHhhhcccc
Confidence 1111 22 12 1126667778888774
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.018 Score=48.56 Aligned_cols=95 Identities=24% Similarity=0.366 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc------------
Q psy4398 112 DPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV------------ 178 (306)
Q Consensus 112 ~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~------------ 178 (306)
+.++..+.|.++ +.|+|+|-|..+. ...++++++.+. ++||.-=+.+
T Consensus 90 ~~~~a~~~a~~l~~~GAdaVKlEgg~-------------------~~~~~I~~L~~~-gIPV~gHiGL~PQ~~~~~GG~r 149 (262)
T d1m3ua_ 90 TPEQAFENAATVMRAGANMVKIEGGE-------------------WLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYK 149 (262)
T ss_dssp SHHHHHHHHHHHHHTTCSEEECCCSG-------------------GGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSC
T ss_pred hhHHHHHHHHHHHhcCCcEEEeccch-------------------hHHHHHHHHHHc-CCeEEeehhhchhhhhhcCCcc
Confidence 455555555555 5699999885221 124567777654 8999977665
Q ss_pred --CCChH---HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 179 --FHNEA---DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 179 --g~~~~---~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
|-+.+ ...+.|+.++++||..+.+.+. --++.++|.+.+++|+|+-|.
T Consensus 150 ~qGkt~~ea~~l~~~a~~le~AGaf~ivlE~v----------p~~va~~It~~~~IPtIGIGA 202 (262)
T d1m3ua_ 150 VQGRGDEAGDQLLSDALALEAAGAQLLVLECV----------PVELAKRITEALAIPVIGIGA 202 (262)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHTCCEEEEESC----------CHHHHHHHHHHCSSCEEEESS
T ss_pred ccCccHHHHHHHHHHHHHHHhhcceEEEEecc----------cHHHHHHHHhhhcceeEeecc
Confidence 22333 3788999999999999999764 236889999999999999886
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=96.93 E-value=0.0048 Score=51.88 Aligned_cols=117 Identities=13% Similarity=0.140 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEEEeccCCChHHHH
Q psy4398 110 TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSCKIRVFHNEADTI 186 (306)
Q Consensus 110 g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~g~~~~~~~ 186 (306)
|.+++++.+.++.+. .||..+-+.+|. +++.-.+.++++|+.++ ..+.+-...+|+.+++.
T Consensus 13 ~~s~ee~~~~a~~~~~~Gf~~~KikvG~----------------~~~~di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~ 76 (252)
T d1yeya1 13 GYSDEKLVRLAKEAVADGFRTIKLKVGA----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAI 76 (252)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCC----------------CHHHHHHHHHHHHHHhCCCceEeeccccCcchHHHH
Confidence 456788888777664 599999998653 24444567788888774 45556666679999999
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH-LKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~-~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
++++.+++.++..+- ++ ..+.+++...++++. .++||.+.=.+.+..++.++++.+
T Consensus 77 ~~~~~l~~~~~~~iE-------eP-~~~~d~~~~~~~~~~~~~ipia~gE~~~~~~~~~~~i~~~ 133 (252)
T d1yeya1 77 DWMRQLAEFDIAWIE-------EP-TSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAG 133 (252)
T ss_dssp HHHHTTGGGCCSCEE-------CC-SCTTCHHHHHHHHHHSTTSCEECCTTCCSHHHHHHHHHHT
T ss_pred HHHHhhhhcCceeec-------CC-cchhhHHHHHHHhhccCCCceeccccccchhhhhhHhhcc
Confidence 999999999988874 22 223467776666665 589999888899999999999864
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.82 E-value=0.015 Score=48.30 Aligned_cols=149 Identities=11% Similarity=0.141 Sum_probs=100.3
Q ss_pred CCceEEEec-CCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEec
Q psy4398 101 KNKIILQIG-TADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIR 177 (306)
Q Consensus 101 ~~p~ivql~-g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir 177 (306)
..|+..+++ ..+++++.+.++.+ ++||+.+-+.+| |. .+. +.++++|+.+ +..+.+-..
T Consensus 4 ~v~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg-~~-------------~D~----~~v~~ir~~~~d~~l~vD~n 65 (243)
T d1r0ma1 4 QVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIK-PG-------------WDV----QPVRATREAFPDIRLTVDAN 65 (243)
T ss_dssp EEEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB-TT-------------BSH----HHHHHHHHHCTTSCEEEECT
T ss_pred EEEeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcC-cc-------------hhH----HHHHHHHHhccCceEEEecc
Confidence 456777765 46788888777766 469999998654 11 233 4566677766 344555555
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRN 256 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGra 256 (306)
.+|+.++...+ +.+++.++.++- ++. .+.+++..+++++.+++||.+.-.+.+..++.++++... .+
T Consensus 66 ~~~~~~~a~~~-~~l~~~~~~~iE-------eP~-~~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~~~d~--- 133 (243)
T d1r0ma1 66 SAYTLADAGRL-RQLDEYDLTYIE-------QPL-AWDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGV--- 133 (243)
T ss_dssp TCCCGGGHHHH-HTTGGGCCSCEE-------CCS-CTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSE---
T ss_pred ccCchHHHHHh-hhhhhccchhhh-------hhc-cccchHHHHHHhhcCCcccccccchhhhhhhhhhhhcccccc---
Confidence 57888887776 678888877663 122 245788899999999999998888999999999988632 11
Q ss_pred cCCCC-Cc----hHHHHHHHHHhcCCCC
Q psy4398 257 HYPVE-KL----PKTILYAHCKYKRFEV 279 (306)
Q Consensus 257 ll~~p-~~----~~~~l~~~~~~~g~~~ 279 (306)
+.-|| .+ .-..+.++.+++|++.
T Consensus 134 v~~d~~~~GGit~~~~i~~~A~~~gi~v 161 (243)
T d1r0ma1 134 INLKVARVGGHAESRRVHDVAQSFGAPV 161 (243)
T ss_dssp EEECTTTTTSHHHHHHHHHHHHHTTCCE
T ss_pred eecccceeccHHHHHHHHHHHHHCCCce
Confidence 11123 11 2236777788888773
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=96.80 E-value=0.011 Score=49.15 Aligned_cols=148 Identities=11% Similarity=0.142 Sum_probs=101.0
Q ss_pred CCceEEEec-CCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc-ccEEEEec
Q psy4398 101 KNKIILQIG-TADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS-IPVSCKIR 177 (306)
Q Consensus 101 ~~p~ivql~-g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir 177 (306)
..|+.++++ ..+++++.+.++.+. +||..+-+.+|. . .+ .+.++++|+.++ ..+.+-..
T Consensus 4 ~i~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~-~-------------~D----~~~v~~ir~~~~~~~l~vDaN 65 (244)
T d1wufa1 4 SIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP-N-------------KD----IQFVEAVRKSFPKLSLMADAN 65 (244)
T ss_dssp EEEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT-T-------------BS----HHHHHHHHTTCTTSEEEEECT
T ss_pred eEEEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC-c-------------HH----HHHHHHHHHhccchhhhhhhh
Confidence 457777875 468999988877665 599999997652 1 12 346778888763 33444444
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccc
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRN 256 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGra 256 (306)
.+|+.+++. .++.+++.+..++- ++ ..+.+++..+++++.+++||++.-.+.+..++.++++.++ .+
T Consensus 66 ~~~~~~~a~-~~~~l~~~~~~wiE-------eP-~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~--- 133 (244)
T d1wufa1 66 SAYNREDFL-LLKELDQYDLEMIE-------QP-FGTKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRA--- 133 (244)
T ss_dssp TCCCGGGHH-HHHTTGGGTCSEEE-------CC-SCSSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSE---
T ss_pred ccccchhhh-hhhcccccchhhhc-------Cc-ccccchhhhhccccccccccccCccccchhhhhhhccccccce---
Confidence 468888876 45788999988763 22 2345788999999999999999999999999999988643 11
Q ss_pred cCCCC-Cc----hHHHHHHHHHhcCCC
Q psy4398 257 HYPVE-KL----PKTILYAHCKYKRFE 278 (306)
Q Consensus 257 ll~~p-~~----~~~~l~~~~~~~g~~ 278 (306)
+--++ .+ .-+.+.++.+++|++
T Consensus 134 v~~d~~~~GGit~~~ki~~~a~~~gi~ 160 (244)
T d1wufa1 134 INLKLARVGGMSSALKIAEYCALNEIL 160 (244)
T ss_dssp EEECTGGGTSHHHHHHHHHHHHHTTCE
T ss_pred eecccccccchhhHHHHHHHHHHcCCE
Confidence 11122 11 123556667777776
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.76 E-value=0.0087 Score=50.19 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=83.7
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.|+|+|=|-+++ -+.+.+.++++..++ .+.-+.|-+. + .+-++.+.+.|++.|-+..
T Consensus 124 ~GADaiLLI~~~---------------L~~~~l~~l~~~a~~-lgl~~LvEvh---~----~~El~~a~~~~a~iIGINn 180 (247)
T d1a53a_ 124 LGADTVLLIVKI---------------LTERELESLLEYARS-YGMEPLIEIN---D----ENDLDIALRIGARFIGINS 180 (247)
T ss_dssp HTCSEEEEEGGG---------------SCHHHHHHHHHHHHT-TTCCCEEEEC---S----HHHHHHHHHTTCSEEEEES
T ss_pred hhcchhhhhhhh---------------ccHHHHHHHHHHHHH-HhhhHHhhcC---C----HHHHHHHHhCCCCeEeeec
Confidence 499999996443 134567777776654 5777888888 2 2334455668999999998
Q ss_pred cCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCC
Q psy4398 205 RTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 205 ~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~ 262 (306)
|.....- .+.+...++.+.+ +..+|+-+||.+.++++.+.+.| +.||.+++++|.
T Consensus 181 RnL~t~~---vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~~d 240 (247)
T d1a53a_ 181 RDLETLE---INKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRNPE 240 (247)
T ss_dssp BCTTTCC---BCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHCTT
T ss_pred cChhhhh---hhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCCCc
Confidence 8754332 4667777777777 78999999999999999998875 499999998774
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.69 E-value=0.011 Score=48.84 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=74.9
Q ss_pred HHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C-CChHHHHHHHHHHHHcCC
Q psy4398 121 KKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F-HNEADTIALCKRLEACGI 197 (306)
Q Consensus 121 ~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g-~~~~~~~~~a~~l~~~G~ 197 (306)
+.+.+|+|.||+=+. +|.....+.+.+.+=+.++++.++ +..+|+=+ + .+.++....++.+.++|+
T Consensus 74 ~a~~~GAdEID~Vin----------~~~~~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGa 142 (226)
T d1vcva1 74 SRLAEVADEIDVVAP----------IGLVKSRRWAEVRRDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGA 142 (226)
T ss_dssp HHHTTTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCeeEEEec----------HHHHhCCCHHHHHHHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCc
Confidence 445569999998321 333344566666666677777663 33455443 2 466778889999999999
Q ss_pred cEEEEcccCC-------CCCCCC--CCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q psy4398 198 IAIGVHGRTK-------AERPRH--RNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 198 d~i~v~~~~~-------~~~~~~--p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~ 249 (306)
|+|--+-.-. .+.+.+ +.+...++++.+.+ ++-|=++|||+|.+++.+++++
T Consensus 143 dFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~a 205 (226)
T d1vcva1 143 HFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDA 205 (226)
T ss_dssp SEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHH
T ss_pred ceeeecccccCCcccccccCcccCcHHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHHh
Confidence 9997532211 111211 12334455555543 5778899999999999998875
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=96.60 E-value=0.013 Score=49.95 Aligned_cols=126 Identities=14% Similarity=0.182 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++.+. +-+..+ ..+.-.++++.+.+.+ ..|+.+-+.. .+..++++
T Consensus 21 iD~~~~~~~i~~l~~~Gv~gl~~~G~t--------GE~~~L--s~~Er~~l~~~~~~~~~~~~~vi~gv~~-~s~~~~i~ 89 (292)
T d1xkya1 21 IDFAKTTKLVNYLIDNGTTAIVVGGTT--------GESPTL--TSEEKVALYRHVVSVVDKRVPVIAGTGS-NNTHASID 89 (292)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTT--------TTGGGS--CHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECeEc--------cchhhC--CHHHHHHHHHHHHHHhCCCceEEEecCc-ccHHHHHH
Confidence 45677887777664 599999997443 111222 2333344455554444 4788887773 56788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+....... .....-+++.+++.+++++||+.= |---+++...++.+
T Consensus 90 ~a~~a~~~Gad~ilv~pP~~~~-~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~ 155 (292)
T d1xkya1 90 LTKKATEVGVDAVMLVAPYYNK-PSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE 155 (292)
T ss_dssp HHHHHHHTTCSEEEEECCCSSC-CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEECCCCCCC-CCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhcc
Confidence 9999999999999987542111 111123567788888889998762 33456666666543
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=96.50 E-value=0.029 Score=47.77 Aligned_cols=126 Identities=14% Similarity=0.152 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+ +.|+++|=++-+. +-+.++ . .+.-.++++.+.+.. ..||.+-+.. .+.+++++
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~v~Gst--------GE~~~L-s-~~Er~~~~~~~~~~~~~~~~vi~gv~~-~st~~ai~ 87 (295)
T d1o5ka_ 19 LDLESYERLVRYQLENGVNALIVLGTT--------GESPTV-N-EDEREKLVSRTLEIVDGKIPVIVGAGT-NSTEKTLK 87 (295)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGG--------GTGGGC-C-HHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECeec--------cchhhC-C-HHHHHHHhhhhccccccCCceEeeccc-ccHHHHHH
Confidence 3567777777755 4699999985332 111122 2 222244555554444 4788887764 56778999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+....-. ..+...-+++.++|.+++++||+.= |--.+.+...++++
T Consensus 88 ~a~~A~~~Gad~v~v~pP~y~-~~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~ 153 (295)
T d1o5ka_ 88 LVKQAEKLGANGVLVVTPYYN-KPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAA 153 (295)
T ss_dssp HHHHHHHHTCSEEEEECCCSS-CCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCCC-CCCHHHHHHHHHHHHhccCCCeeEEeccchhcccchhHHHHHHHh
Confidence 999999999999998764211 1111113466678888888887662 44556776666654
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=96.43 E-value=0.00057 Score=57.62 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
.+..++|+.+.+.|+|.+++-+-.... ...+.+...+..+++.. +|+...|||+|.++++.+++.|+ .++++++.
T Consensus 30 ~dP~~~a~~~~~~g~~~l~ivDLda~~-~~~~~~~~~~~~~~~~~-~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~ 107 (241)
T d1qo2a_ 30 KDPVELVEKLIEEGFTLIHVVDLSNAI-ENSGENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp SCHHHHHHHHHHTTCCCEEEEEHHHHH-HCCCTTHHHHHHGGGGG-GGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEeccccc-ccCCcchhheehhcccc-cchhhhhhhhhhhhhhhccccccceEecCccccc
Confidence 357899999999999999985532110 11244566667776654 79999999999999999999876 88999998
Q ss_pred CCCchHH
Q psy4398 260 VEKLPKT 266 (306)
Q Consensus 260 ~p~~~~~ 266 (306)
+|.+.+.
T Consensus 108 ~~~~~~~ 114 (241)
T d1qo2a_ 108 DPSFLKS 114 (241)
T ss_dssp CTTHHHH
T ss_pred Cchhhhh
Confidence 8855443
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.41 E-value=0.006 Score=50.42 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=93.1
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEe
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKI 176 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 176 (306)
+++..+|...+...+.+-.+.+.. |+|.+-+-+. +|+. .+| .+.++.+++.+..|+.+=+
T Consensus 2 ~kI~pSil~ad~~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn~-----t~~----------~~~i~~i~~~~~~~~dvHL 66 (220)
T d1h1ya_ 2 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNL-----TIG----------APVIQSLRKHTKAYLDCHL 66 (220)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB-----CBC----------HHHHHHHHTTCCSEEEEEE
T ss_pred cEEEhhhhhcCHHHHHHHHHHHHHcCCCEEEEeeecCcccccc-----ccC----------chhhhhhhhhcchhhhhHH
Confidence 367888888888888888887764 8997666432 4542 122 3456677777777777644
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcc---------------------------cCC----------------------
Q psy4398 177 RVFHNEADTIALCKRLEACGIIAIGVHG---------------------------RTK---------------------- 207 (306)
Q Consensus 177 r~g~~~~~~~~~a~~l~~~G~d~i~v~~---------------------------~~~---------------------- 207 (306)
=. .+ ..++.+.+.++|++.|++|- .+.
T Consensus 67 Mv-~~---p~~~i~~~~~~g~~~I~~H~E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~~~d~vlim~v 142 (220)
T d1h1ya_ 67 MV-TN---PSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTV 142 (220)
T ss_dssp ES-SC---GGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESS
T ss_pred Hh-cc---hhhhhHHhhhcccceeeecccccchhHHHHHHHHHHcCCCcceeeccccchhHHHHHHhcccccceEEEEec
Confidence 32 11 11223334444444444432 110
Q ss_pred CCCCCC----CCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCCchHH--HHHHHHHh
Q psy4398 208 AERPRH----RNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEKLPKT--ILYAHCKY 274 (306)
Q Consensus 208 ~~~~~~----p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~~~~~--~l~~~~~~ 274 (306)
..++.| +..++-++++++.. +++|..=|||+ .+++..+.+.|+ .+|++++.++...+. .|++-+++
T Consensus 143 ~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn-~~~i~~l~~aGad~~V~GS~if~~~d~~~~i~~lr~~~~~ 218 (220)
T d1h1ya_ 143 EPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLG-PSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEG 218 (220)
T ss_dssp CTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred CCCCcccccchhhhHHHHHHHhcCCCceEEEEecCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHh
Confidence 111111 23577788888766 78999999998 457888887765 999999986644332 55555443
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.34 E-value=0.1 Score=43.71 Aligned_cols=159 Identities=17% Similarity=0.217 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhhcc-cccccccCCCCCceeeecCCCCCCceEEEec----CCCHHH
Q psy4398 41 MNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDL-LNTIDFVDPLDGSVVFRTCPREKNKIILQIG----TADPER 115 (306)
Q Consensus 41 ~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~p~ivql~----g~~~~~ 115 (306)
..|..+..++.+.|++++.+.-....- ..+...+... +..+ +. +-+.+.+.. ...-+++.+- ..++++
T Consensus 24 aYD~~~A~~~~~agiDiiLVGDSlgmv-~~G~~~T~~Vt~d~m--~~--H~~aV~rga--~~~~iv~DmPf~s~~~s~~~ 96 (262)
T d1oy0a_ 24 AYDYSTARIFDEAGIPVLLVGDSAANV-VYGYDTTVPISIDEL--IP--LVRGVVRGA--PHALVVADLPFGSYEAGPTA 96 (262)
T ss_dssp CCSHHHHHHHHTTTCCEEEECTTHHHH-TTCCSSSSSCCGGGT--HH--HHHHHHHHC--TTSEEEEECCTTSSTTCHHH
T ss_pred CCCHHHHHHHHHcCCCEEEEcCchhhh-hcCCCCcceeeHHHH--HH--HHHHHHhcc--ccceeEecchhhhcccchHH
Confidence 567889998988999999876221000 0000000000 0000 00 000001111 1233444552 245666
Q ss_pred HHHH-HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC-------------
Q psy4398 116 ALEA-AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH------------- 180 (306)
Q Consensus 116 ~~~a-a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~------------- 180 (306)
..+. .+.+++ |+|+|-+..+. ...++++++.+. ++||.-=+.+-|
T Consensus 97 a~~nA~r~~~~~ga~avkleg~~-------------------~~~~~I~~L~~~-gIPV~gHiGLtPQ~~~~~Gg~r~~G 156 (262)
T d1oy0a_ 97 ALAAATRFLKDGGAHAVKLEGGE-------------------RVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFRVQG 156 (262)
T ss_dssp HHHHHHHHHHTTCCSEEEEEBSG-------------------GGHHHHHHHHHH-TCCEEEEEECCC-------------
T ss_pred HHHHHHHHHhccccceeeechhh-------------------hhHHHHHHHHhc-CCceEEeeeecceeeeecCccceec
Confidence 5554 455655 99999995221 124566666553 788886655411
Q ss_pred -Ch--HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 181 -NE--ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 181 -~~--~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
+. ....+-|+.++++|+..|.+.+. -.++.++|.+.+++|+|+-|.
T Consensus 157 k~~~~~~l~~da~~le~AGa~~ivlE~V----------p~~la~~It~~~~IPtIGIGA 205 (262)
T d1oy0a_ 157 RGDAAEQTIADAIAVAEAGAFAVVMEMV----------PAELATQITGKLTIPTVGIGA 205 (262)
T ss_dssp -CHHHHHHHHHHHHHHHHTCSEEEEESC----------CHHHHHHHHHHCSSCEEEESS
T ss_pred cchhhhHhHHHHHHHHhCCcEEEecccc----------cHhHHHHHHhhCCceEEEecc
Confidence 21 23556689999999999998764 237889999999999998876
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=96.32 E-value=0.027 Score=47.42 Aligned_cols=126 Identities=11% Similarity=0.041 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHH---HHHHhcccccEEEEecc--C-CChHHHHHHH
Q psy4398 116 ALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNIL---TTLISNLSIPVSCKIRV--F-HNEADTIALC 189 (306)
Q Consensus 116 ~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv---~~v~~~~~~pv~vKir~--g-~~~~~~~~~a 189 (306)
..++...++.|+|.||+=+. +|.....+.+.+.+.+ ..+++..+ +..+|+=+ + .+.++....+
T Consensus 88 ~~Ea~~Ai~~GAdEID~Vin----------~~~l~~g~~~~v~e~~~~i~~~~~~~~-~~~lKVIlEt~~L~~~e~i~~~ 156 (256)
T d2a4aa1 88 LNDTEKALDDGADEIDLVIN----------YKKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIKT 156 (256)
T ss_dssp HHHHHHHHHHTCSEEEEECC----------HHHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEecc----------HHHHhcCcHHHHHHHHHHHHHHHhhcc-CCeeEeeehhhhcCcHHHHHHH
Confidence 44555555679999998321 3332333444555544 44444432 23345432 2 3344555455
Q ss_pred H-HHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhh------------CCCcEEEecCCCCHHHHHHHHHhhh-hhcc
Q psy4398 190 K-RLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQH------------LKIPVIANGGSKEIVDYGGVFSLNC-AFLR 255 (306)
Q Consensus 190 ~-~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~------------~~ipvia~GGI~s~~~~~~~l~~~v-~vGr 255 (306)
. ...++|+|+|--+- +...+....+.+..+++. -++.|=++|||+|.+++.+++..+. .+|.
T Consensus 157 ~~~~~~aGadFVKTST----G~~~~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i~~g~~~lG~ 232 (256)
T d2a4aa1 157 TLAVLNGNADFIKTST----GKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRFLSS 232 (256)
T ss_dssp HHHHHTTTCSEEECCC----SCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhcccHHHHhcc----CCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHHHHHHHhccc
Confidence 4 45689999996432 222222333333322221 2578999999999999999999876 3444
Q ss_pred c
Q psy4398 256 N 256 (306)
Q Consensus 256 a 256 (306)
.
T Consensus 233 ~ 233 (256)
T d2a4aa1 233 L 233 (256)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.03 Score=48.34 Aligned_cols=146 Identities=10% Similarity=0.080 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHh-c-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-H-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~ 187 (306)
.+|+++++.|+.+. + ||..+-+..|- ..++.-.+.++++++++ +..+.+-...+|+.+++++
T Consensus 46 ~~p~~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avr~~~pd~~l~vDaN~~~s~~~Ai~ 110 (309)
T d1jdfa1 46 MTPDAVVRLAEAAYEKYGFNDFKLKGGV---------------LAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIK 110 (309)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSS---------------SCHHHHHHHHHHHHHHCTTSCEEEECTTBBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEECCC---------------CCHHHHHHHHHHHHHHCCCCeEEeeccCCCCHHHHHH
Confidence 47888888888665 4 99999997552 13444567788888887 3455555555799999999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCC---CCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh-hhccccCCCC--
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPR---HRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC-AFLRNHYPVE-- 261 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~---~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v-~vGrall~~p-- 261 (306)
+++.++ .+..++- ++.. ....++..+++++.+++||.+.-.+.+..++.++++.+. .+ +..|+
T Consensus 111 ~~~~le-~~l~w~E-------EPv~~~d~~~~~~~l~~lr~~~~ipIa~gE~~~~~~~~~~~i~~~a~di---~~~d~~~ 179 (309)
T d1jdfa1 111 IGKYLK-GSLAYAE-------DPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDI---PLADPHF 179 (309)
T ss_dssp HHHHTT-TTCSCEE-------SCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSSSHHHHHHHHHHTCCSE---EBCCHHH
T ss_pred HHHHHh-hcchhhh-------hhcccCcchhhHHHHHHhhcccccceecCcccchhhhhhhhhhhcccee---eeccccc
Confidence 999886 5676652 1111 112367789999999999998888999999999988643 21 11122
Q ss_pred --CchHHHHHHHHHhcCCCCCcc
Q psy4398 262 --KLPKTILYAHCKYKRFEVPKY 282 (306)
Q Consensus 262 --~~~~~~l~~~~~~~g~~~~~~ 282 (306)
...-+.+.+..+++|+++..+
T Consensus 180 GGit~~~kia~lA~~~gi~v~~H 202 (309)
T d1jdfa1 180 WTMQGSVRVAQMCHEFGLTWGSH 202 (309)
T ss_dssp HCHHHHHHHHHHHHHHTCCCBCC
T ss_pred ccchHHHHHHHHHHhcCCCcccc
Confidence 112236667788888874443
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.18 E-value=0.0051 Score=51.05 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCcEEEEcccCCC---CCCCCCCcHHHHHHHHh-hCCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKA---ERPRHRNRIEMIRTLTQ-HLKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~---~~~~~p~~~~~v~~i~~-~~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
+.++.+.+.|+|++.+...... .....+..++.++.+++ .+++||++-||| +.+++.++++.| +++.++++.
T Consensus 126 ~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~ni~~l~~~Ga~giAvis~I~~ 204 (226)
T d2tpsa_ 126 SEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI-TIDNAAPVIQAGADGVSMISAISQ 204 (226)
T ss_dssp HHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSC-CTTTSHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHhcCCCCEEEecCC-CHHHHHHHHHhCCCEEEEhHHhhc
Confidence 4445666789999998765322 22223345677777765 469999999999 678899988874 588888886
Q ss_pred CC
Q psy4398 260 VE 261 (306)
Q Consensus 260 ~p 261 (306)
.+
T Consensus 205 a~ 206 (226)
T d2tpsa_ 205 AE 206 (226)
T ss_dssp SS
T ss_pred CC
Confidence 44
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=96.17 E-value=0.045 Score=44.65 Aligned_cols=133 Identities=12% Similarity=0.144 Sum_probs=83.2
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCC
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFH 180 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~ 180 (306)
.+++.=|.+.++++..+.++.+.+ |...||+-+..|+. .+.++.+++..+ -+.+....-.
T Consensus 14 ~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a------------------~~~I~~l~~~~p-~~~vGaGTV~ 74 (212)
T d1vhca_ 14 LKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAA------------------ADAIRLLRANRP-DFLIAAGTVL 74 (212)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTH------------------HHHHHHHHHHCT-TCEEEEESCC
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhH------------------HHHHHHHHhcCC-CceEeeeecc
Confidence 367777788889999999997754 99999998766542 345666665542 1333333112
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccC--------------------C--------CC------CCCCCC-cHHHHHHHHh
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRT--------------------K--------AE------RPRHRN-RIEMIRTLTQ 225 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~--------------------~--------~~------~~~~p~-~~~~v~~i~~ 225 (306)
+ .+-++.+.++|++++.--+.. . .+ .+.+.. ...+++.++.
T Consensus 75 ~----~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vK~FPA~~~gG~~~lkal~~ 150 (212)
T d1vhca_ 75 T----AEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLG 150 (212)
T ss_dssp S----HHHHHHHHHHTCSEEECSSCCHHHHHHHHHTTCCEECEECSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHT
T ss_pred c----HHHHHHHHhhCCcEEECCCCCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEEccccccchHHHHHHHhc
Confidence 2 233444555666666421100 0 00 011111 3578899988
Q ss_pred hC-CCcEEEecCCCCHHHHHHHHHhh---hhhccccC
Q psy4398 226 HL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHY 258 (306)
Q Consensus 226 ~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGrall 258 (306)
-+ +++++.+|||+ .+++.+.++.+ +..|+.++
T Consensus 151 p~p~~~~~ptGGV~-~~N~~~yl~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 151 PYAQLQIMPTGGIG-LHNIRDYLAIPNIVACGGSWFV 186 (212)
T ss_dssp TTTTCEEEEBSSCC-TTTHHHHHTSTTBCCEEECGGG
T ss_pred cccCCeEEecCCCC-HHHHHHHHhCCCEEEEEChhhC
Confidence 88 79999999996 68888888875 36667665
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.12 E-value=0.037 Score=45.64 Aligned_cols=123 Identities=14% Similarity=0.188 Sum_probs=85.1
Q ss_pred CCceEEEec-CCCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEec
Q psy4398 101 KNKIILQIG-TADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIR 177 (306)
Q Consensus 101 ~~p~ivql~-g~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir 177 (306)
..|+.++++ ..++++..+.++.+ ++||..+-+.++ |. .+. +.++++|+.+ +..+.+-..
T Consensus 4 ~ipv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg-~~-------------~D~----~~v~~ir~~~~d~~l~vDaN 65 (241)
T d1wuea1 4 KIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIR-PG-------------YDV----EPVALIRQHFPNLPLMVDAN 65 (241)
T ss_dssp EEECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECB-TT-------------BSH----HHHHHHHHHCTTSCEEEECT
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcC-cc-------------HHH----HHHHHHHHhccccceeeccc
Confidence 357777764 35777777766655 469999999765 11 233 3456666665 344555555
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
.+|+.+++..+.+ +++.++.++- ++. .+.+++..+++++.+++||.+.-.+.+.+++.++++.+
T Consensus 66 ~~~~~~~a~~~~~-~~~~~i~~iE-------eP~-~~~~~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~ 129 (241)
T d1wuea1 66 SAYTLADLPQLQR-LDHYQLAMIE-------QPF-AADDFLDHAQLQRELKTRICLDENIRSLKDCQVALALG 129 (241)
T ss_dssp TCCCGGGHHHHHG-GGGSCCSCEE-------CCS-CTTCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHT
T ss_pred ccCCHHHhhhhhh-hhhhhhhhhc-------Ccc-cccchhhhhhhhcccccccccCcccccchhhhhhhhhh
Confidence 5788888887754 5667766552 222 23467889999999999998888899999999988863
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.08 E-value=0.067 Score=45.53 Aligned_cols=126 Identities=15% Similarity=0.143 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++.+. |-...-..+.-.++++.+.+.+ ..|+.+-+.. .+.+++++
T Consensus 25 iD~~~l~~~i~~li~~Gv~Gi~v~G~t----------GE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~-~s~~~~i~ 93 (296)
T d1xxxa1 25 LDTATAARLANHLVDQGCDGLVVSGTT----------GESPTTTDGEKIELLRAVLEAVGDRARVIAGAGT-YDTAHSIR 93 (296)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTT----------TTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECeec----------cchhhCCHHHHHHHHHHHHHHhccccceEecccc-chhHHHHH
Confidence 35677777777664 599999886442 1111112222234444444443 3678777653 56788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+....... .....-.++.++|.+++++||+.= |-..+++..+++.+
T Consensus 94 ~a~~a~~~Gad~v~i~~P~~~~-~~~~~l~~~~~~v~~~~~~pi~lYn~p~~~g~~~~~~~~~~L~~ 159 (296)
T d1xxxa1 94 LAKACAAEGAHGLLVVTPYYSK-PPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALAS 159 (296)
T ss_dssp HHHHHHHHTCSEEEEECCCSSC-CCHHHHHHHHHHHHTTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHHHHHHhcCCeEEEEeccCCC-CCHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCHHHHHHhcC
Confidence 9999999999999887543211 111113567788888889998763 33457777766654
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.023 Score=45.42 Aligned_cols=134 Identities=14% Similarity=0.071 Sum_probs=80.2
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEE--EEeccCC
Q psy4398 104 IILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVS--CKIRVFH 180 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~--vKir~g~ 180 (306)
+++-+--.+.++..+.++.+..+.|.+++++. .. . .+| + ++++.+++.. +.+++ .|+. .
T Consensus 4 l~vAlD~~~~~~~~~~~~~~~~~vdiikig~~--~~--~--~~G------~----~~i~~l~~~~~~~~i~~d~k~~--d 65 (213)
T d1q6oa_ 4 LQVALDNQTMDSAYETTRLIAEEVDIIEVGTI--LC--V--GEG------V----RAVRDLKALYPHKIVLADAKIA--D 65 (213)
T ss_dssp EEEEECCSSHHHHHHHHHHHGGGCSEEEECHH--HH--H--HHC------T----HHHHHHHHHCTTSEEEEEEEEC--S
T ss_pred EEEEecCCCHHHHHHHHHhcCCCccEEEeCee--cc--c--cCC------H----HHHHHHHHhcccccceeEEeec--c
Confidence 44455567788888888888889999999732 10 0 122 2 3455565543 44544 4544 2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCC------------------------------------CCC------------CC
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTK------------------------------------AER------------PR 212 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~------------------------------------~~~------------~~ 212 (306)
. ...+++.+.++|+|.+++|+... .+. ..
T Consensus 66 ~---~~~~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 142 (213)
T d1q6oa_ 66 A---GKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAA 142 (213)
T ss_dssp C---HHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHHHT
T ss_pred c---hHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecccCCCCCHHHHHHHHHhHHHHHHHHHhcccCcC
Confidence 2 22345667788999999876320 000 00
Q ss_pred C-CCcHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 213 H-RNRIEMIRTLTQH--LKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 213 ~-p~~~~~v~~i~~~--~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
+ ......+..+++. .++++...||++ .+++.++++.|+ .+||+++.
T Consensus 143 ~~~~~~~~l~~i~~~~~~~~~i~~~gGi~-~~~~~~~~~~Gad~iVVGr~I~~ 194 (213)
T d1q6oa_ 143 GVAWGEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRD 194 (213)
T ss_dssp TCCCCHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHHT
T ss_pred CeeCCHHHHHHHHHhhccCceEecCCCcC-cCCHHHHHHcCCCEEEEChhhcC
Confidence 0 1112333444333 368888888875 788888887754 89999986
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.025 Score=48.17 Aligned_cols=126 Identities=16% Similarity=0.164 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+.++.+. .|+++|=++.+. |-...-..+.-.++++.+.+.+ .+|+.+-+.. .+.+++++
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gl~~~Gst----------GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~-~s~~~~i~ 87 (292)
T d2a6na1 19 VCRASLKKLIDYHVASGTSAIVSVGTT----------GESATLNHDEHADVVMMTLDLADGRIPVIAGTGA-NATAEAIS 87 (292)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSTT----------TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECeec----------cchhhCCHHHHHHHhhhhhhhccccceeEeeccc-chHHHHHH
Confidence 45677888777664 599999996443 1111112222234444444443 3688887653 46788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe------cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~------GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+....-. ......-+++.+++.+++++||+.= |--.+++....+.+
T Consensus 88 ~~~~a~~~Gad~~~~~pP~~~-~~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~~ 153 (292)
T d2a6na1 88 LTQRFNDSGIVGCLTVTPYYN-RPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETVGRLAK 153 (292)
T ss_dssp HHHTTTTSSCCEEEEECCCSS-CCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HhccHHhcCCcceeccCCCCC-CCCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHHHHHHhc
Confidence 999999999999998753211 1111113567788888889997653 22346666665543
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=95.89 E-value=0.073 Score=43.42 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=60.2
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLN 250 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~ 250 (306)
|+..=+|. .+.++..++++.+.+.|+..|-++-++ |..++.++.+++...--+++.|.|.|.++++.+++.|
T Consensus 18 ~iipvl~~-~~~~~a~~~~~al~~~Gi~~iEitl~~-------p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aG 89 (216)
T d1mxsa_ 18 RILPVITI-AREEDILPLADALAAGGIRTLEVTLRS-------QHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAG 89 (216)
T ss_dssp SEEEEECC-SCGGGHHHHHHHHHHTTCCEEEEESSS-------THHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHT
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCC
Confidence 44444553 467889999999999999999998664 4578899999998854689999999999999999976
Q ss_pred h
Q psy4398 251 C 251 (306)
Q Consensus 251 v 251 (306)
+
T Consensus 90 a 90 (216)
T d1mxsa_ 90 A 90 (216)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.012 Score=48.15 Aligned_cols=144 Identities=12% Similarity=0.124 Sum_probs=84.4
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc---------cccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF---------SLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~---------~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.|++.=|...++++....++.+.+ |+..||+-+..|... ...-..|..-..+++.+.+.+++ +..
T Consensus 15 ~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~a-----Ga~ 89 (213)
T d1wbha1 15 GPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEA-----GAQ 89 (213)
T ss_dssp CSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHH-----TCS
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHC-----CCc
Confidence 478888889999999999997765 999999988776520 00011111112233333322221 111
Q ss_pred EEEEeccCCChH----------------HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEe
Q psy4398 172 VSCKIRVFHNEA----------------DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIAN 234 (306)
Q Consensus 172 v~vKir~g~~~~----------------~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~ 234 (306)
+.| +++.+.+ .+..-+..+.++|++.+-+..-..- + ...+++.++.-+ +++++.+
T Consensus 90 Fiv--SP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~----G--g~~~lkal~~p~p~~~~~pt 161 (213)
T d1wbha1 90 FAI--SPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEAN----G--GVKALQAIAGPFSQVRFCPT 161 (213)
T ss_dssp CEE--ESSCCHHHHHHHHHSSSCEEEEESSHHHHHHHHHTTCCEEEETTTTTT----T--HHHHHHHHHTTCTTCEEEEB
T ss_pred EEE--CCCCCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEeccchhc----C--hHHHHHHhcCcccCCceeee
Confidence 111 1111110 0112223345578887777543211 1 247889998887 8999999
Q ss_pred cCCCCHHHHHHHHHhhh---hhccccCC
Q psy4398 235 GGSKEIVDYGGVFSLNC---AFLRNHYP 259 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v---~vGrall~ 259 (306)
|||+ .+++.+.++.+. ..|+.++.
T Consensus 162 GGV~-~~n~~~yl~~g~v~~~~Gs~l~~ 188 (213)
T d1wbha1 162 GGIS-PANYRDYLALKSVLCIGGSWLVP 188 (213)
T ss_dssp SSCC-TTTHHHHHTSTTBSCEEEGGGSC
T ss_pred CCCC-HHHHHHHHhCCCEEEEEChhhCC
Confidence 9987 678888888753 66777764
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=95.84 E-value=0.021 Score=47.69 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=66.6
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc--C---CChH---HHHHHHHHHHHcC
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV--F---HNEA---DTIALCKRLEACG 196 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~--g---~~~~---~~~~~a~~l~~~G 196 (306)
.|+|.|||.-. - ..|| + .|. ..+++.+++.+++||.|=+|+ | .+.+ ...+-++.+.+.|
T Consensus 19 ~GAdRIELc~~-l-------~~GG-l--TPS--~g~i~~~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G 85 (247)
T d1twda_ 19 NGADRVELCAA-P-------KEGG-L--TPS--LGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELG 85 (247)
T ss_dssp TTCSEEEECBC-G-------GGTC-B--CCC--HHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEcCC-c-------ccCC-C--CCC--HHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 59999999411 0 1122 1 121 234556667789999999886 2 1233 3667778888999
Q ss_pred CcEEEEcccCCCCCC-------------------C-----CCCcHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHHhhh
Q psy4398 197 IIAIGVHGRTKAERP-------------------R-----HRNRIEMIRTLTQHLKIP-VIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 197 ~d~i~v~~~~~~~~~-------------------~-----~p~~~~~v~~i~~~~~ip-via~GGI~s~~~~~~~l~~~v 251 (306)
+|+|++-.-+.++.. . -+...+.+..+.+. ++. |..+||-.+..+..+.++.++
T Consensus 86 ~dGvV~G~L~~dg~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~l-G~~rILTSGg~~~a~~G~~~L~~L~ 164 (247)
T d1twda_ 86 FPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAEL-GIARVLTSGQKSDALQGLSKIMELI 164 (247)
T ss_dssp CSEEEECCBCTTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHH-TCCEEEECTTSSSTTTTHHHHHHHH
T ss_pred CCeEEEEEECCCCCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhc-CCCeEeccCCCCchhHHHHHHHHHH
Confidence 999998544432211 0 01113344444444 554 677888777777666666544
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.81 E-value=0.051 Score=46.16 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
-|.+.+.+.++.+ +.|+++|=++.+. |-...-..+.-.++++.+.+.. .++.+-+. +.+.+++++++
T Consensus 17 iD~~~~~~~i~~l~~~Gv~gi~~~Gtt----------GE~~~Ls~~Er~~~~~~~~~~~-~~~i~gv~-~~st~~~i~~a 84 (293)
T d1w3ia_ 17 IDKEKLKIHAENLIRKGIDKLFVNGTT----------GLGPSLSPEEKLENLKAVYDVT-NKIIFQVG-GLNLDDAIRLA 84 (293)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTT----------TTGGGSCHHHHHHHHHHHHTTC-SCEEEECC-CSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECeec----------hhhhhCCHHHHHHHHHHHHhhc-cccccccc-cchhhhhhhhh
Confidence 4667788877766 4599999986442 2222223343466777776654 45655544 35678899999
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 190 KRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 190 ~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
+.+++.|+|++.+.....-.......-.++.++|.+++++||+.
T Consensus 85 ~~a~~~Ga~~~~~~~P~~~~~~~~~~i~~~f~~Ia~a~~~pi~l 128 (293)
T d1w3ia_ 85 KLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYL 128 (293)
T ss_dssp HHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEE
T ss_pred hhhhhhccccccccccchhccchHHHHHHHHHHHHHhhccceee
Confidence 99999999999876442111111111246778888888888765
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=95.77 E-value=0.047 Score=44.48 Aligned_cols=83 Identities=19% Similarity=0.136 Sum_probs=66.2
Q ss_pred HHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCC
Q psy4398 158 CNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGS 237 (306)
Q Consensus 158 ~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI 237 (306)
.++++.+++. ++..=+|. .+.++..++++.+.+.|+..|-++-++ |..++.++++++...--+++.|.|
T Consensus 5 ~~~~~~l~~~---~iipvlr~-~~~~~~~~~~~al~~~Gi~~iEitl~~-------~~a~~~I~~l~~~~p~~~vGaGTV 73 (212)
T d1vhca_ 5 QQIIEKLREL---KIVPVIAL-DNADDILPLADTLAKNGLSVAEITFRS-------EAAADAIRLLRANRPDFLIAAGTV 73 (212)
T ss_dssp HHHHHHHHHH---CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHHHHHCTTCEEEEESC
T ss_pred HHHHHHHHHC---CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHhcCCCceEeeeec
Confidence 4566666654 44444553 457889999999999999999998664 457899999998884468999999
Q ss_pred CCHHHHHHHHHhhh
Q psy4398 238 KEIVDYGGVFSLNC 251 (306)
Q Consensus 238 ~s~~~~~~~l~~~v 251 (306)
.|.++++.+++.|+
T Consensus 74 ~~~~~~~~a~~aGa 87 (212)
T d1vhca_ 74 LTAEQVVLAKSSGA 87 (212)
T ss_dssp CSHHHHHHHHHHTC
T ss_pred ccHHHHHHHHhhCC
Confidence 99999999998765
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=95.57 E-value=0.068 Score=44.55 Aligned_cols=113 Identities=15% Similarity=0.081 Sum_probs=81.3
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.|+|+|=|-..+ -..+.+.++++..+ ..+.-+.|-+. + ..++-+.+...|++.|-|..
T Consensus 122 ~GADaiLLI~~~---------------L~~~~l~~l~~~a~-~lgle~LvEvh---~---~~El~~al~~~~a~iiGINn 179 (251)
T d1i4na_ 122 VGADAILIIARI---------------LTAEQIKEIYEAAE-ELGMDSLVEVH---S---REDLEKVFSVIRPKIIGINT 179 (251)
T ss_dssp TTCSEEEEEGGG---------------SCHHHHHHHHHHHH-TTTCEEEEEEC---S---HHHHHHHHTTCCCSEEEEEC
T ss_pred hccceEEeeccc---------------ccHHHHHHHHHHHH-HhCCeeecccC---C---HHHHHHHhcccccceeeeee
Confidence 499999996543 13455677776654 46888888888 2 34454566667899999998
Q ss_pred cCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCc
Q psy4398 205 RTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKL 263 (306)
Q Consensus 205 ~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~ 263 (306)
|.....-. +.+...++.+.+ +..+|+-+||.++++++.+ +.| +-||++++..+..
T Consensus 180 RdL~t~~v---d~~~~~~L~~~ip~~~~~IaESGI~~~~d~~~l-~~G~davLIG~sLm~~~~p 239 (251)
T d1i4na_ 180 RDLDTFEI---KKNVLWELLPLVPDDTVVVAESGIKDPRELKDL-RGKVNAVLVGTSIMKAENP 239 (251)
T ss_dssp BCTTTCCB---CTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHH-TTTCSEEEECHHHHHCSSH
T ss_pred cchhccch---hhhHHHHHHhhCCCCCEEEEcCCCCCHHHHHHH-HhCCCEEEEChHHhCCCCH
Confidence 87554332 445566777776 6889999999999999875 555 4999999986643
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=95.51 E-value=0.065 Score=44.21 Aligned_cols=144 Identities=13% Similarity=0.130 Sum_probs=93.5
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccC----CCccccccCCccccccCChHHHHHHHHHHHhcccccEEE
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMG----CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSC 174 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~g----cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v 174 (306)
.+..+..+|...+...+.+..+.+.+ |+|.+-+.+. +|+. .+| -++++.+++....|+.+
T Consensus 9 ~~~~IspSIl~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~-----t~~----------~~~v~~i~~~t~~~~dv 73 (230)
T d1rpxa_ 9 SDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNI-----TIG----------PLVVDSLRPITDLPLDV 73 (230)
T ss_dssp TSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB-----CCC----------HHHHHHHGGGCCSCEEE
T ss_pred CCeEEEcchhhcCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCcc-----ccC----------hHHHhhhhhccCceeee
Confidence 34578888999999889888888864 8887665432 4552 222 24567777777788777
Q ss_pred EeccCCChHHHHHHHHHHHHcCCcEEEEcccC----------------------------C-------------------
Q psy4398 175 KIRVFHNEADTIALCKRLEACGIIAIGVHGRT----------------------------K------------------- 207 (306)
Q Consensus 175 Kir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~----------------------------~------------------- 207 (306)
=+=. .+...+.+.+.++|++.+++|--. .
T Consensus 74 HLMv----~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~vD~VllM~V 149 (230)
T d1rpxa_ 74 HLMI----VEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSV 149 (230)
T ss_dssp EEES----SSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESS
T ss_pred eeee----cchhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhhCCEEEEEEe
Confidence 6552 234566667777788877776321 0
Q ss_pred CCCCCC----CCcHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCCc
Q psy4398 208 AERPRH----RNRIEMIRTLTQH-----LKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEKL 263 (306)
Q Consensus 208 ~~~~~~----p~~~~~v~~i~~~-----~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~~ 263 (306)
..++.+ +..++-++++++. .++.|..=|||+ .+++..+.+.|+ .+|++++.++..
T Consensus 150 ~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~~Gad~~V~GS~if~~~d~ 216 (230)
T d1rpxa_ 150 NPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAPDY 216 (230)
T ss_dssp CTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred cCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcC-HHHHHHHHHcCCCEEEEChHHHCCCCH
Confidence 111111 2245666555443 367888899998 457778887765 999999987643
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=95.40 E-value=0.066 Score=45.45 Aligned_cols=111 Identities=9% Similarity=0.074 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHH-hc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHH
Q psy4398 111 ADPERALEAAKKV-EH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTI 186 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~ 186 (306)
-|.+.+.+..+.+ +. |+++|=++.+. |-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+++
T Consensus 21 iD~~~l~~~i~~li~~~Gv~gi~v~Gtt----------GE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~s~~~~i 89 (293)
T d1f74a_ 21 INEKGLRQIIRHNIDKMKVDGLYVGGST----------GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKEAV 89 (293)
T ss_dssp BCHHHHHHHHHHHHHTSCCSEEEESSGG----------GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-SCHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEECccC----------cchhhCCHHHHhhhhheeeccccCcccccccccc-ccHHHHH
Confidence 4567777777754 55 99999996331 2222223333345555554444 4788887753 5778899
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 187 ALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 187 ~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
++++.+++.|+|++.+....-. ......-.++...+.+.+++||+.
T Consensus 90 ela~~a~~~Gad~i~~~pP~~~-~~s~~~~~~~~~~v~~~~~~pi~i 135 (293)
T d1f74a_ 90 ELGKYATELGYDCLSAVTPFYY-KFSFPEIKHYYDTIIAETGSNMIV 135 (293)
T ss_dssp HHHHHHHHHTCSEEECCCCCSS-CCCHHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHcCCCEeeccCcccc-ccchHHHHHHHhcccccCCceEEE
Confidence 9999999999999977543211 011111234555666666777664
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.35 E-value=0.15 Score=40.90 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=51.4
Q ss_pred ecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE--EEeccCCChHHH
Q psy4398 108 IGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS--CKIRVFHNEADT 185 (306)
Q Consensus 108 l~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~--vKir~g~~~~~~ 185 (306)
|--.+.++..+.++.+..+.+.++++..- - ..+| + +.++.+++..+.+++ .|+- .-..+.
T Consensus 6 LD~~~~~~a~~~~~~l~~~v~~iKvG~~l--~----~~~G------~----~~i~~l~~~~~~~if~DlK~~--Di~~t~ 67 (206)
T d2czda1 6 LDVYEGERAIKIAKSVKDYISMIKVNWPL--I----LGSG------V----DIIRRLKEETGVEIIADLKLA--DIPNTN 67 (206)
T ss_dssp CCCCSHHHHHHHHHHHGGGCSEEEEEHHH--H----HHHC------T----THHHHHHHHHCCEEEEEEEEC--SCHHHH
T ss_pred eCCCCHHHHHHHHHHhCCcccEEEECHHH--H----hhcC------H----HHHHHHHHhcCCeEEEEeeee--eecccc
Confidence 33456777777777777789999997421 0 0122 2 245556555566754 5555 323345
Q ss_pred HHHHHHHHHcCCcEEEEccc
Q psy4398 186 IALCKRLEACGIIAIGVHGR 205 (306)
Q Consensus 186 ~~~a~~l~~~G~d~i~v~~~ 205 (306)
...++.+.++|+|.+++|+.
T Consensus 68 ~~~~~~~~~~gad~~Tvh~~ 87 (206)
T d2czda1 68 RLIARKVFGAGADYVIVHTF 87 (206)
T ss_dssp HHHHHHHHHTTCSEEEEEST
T ss_pred hheehhhccccccEEEeeec
Confidence 67778888999999999863
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.054 Score=44.18 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=62.2
Q ss_pred ccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q psy4398 170 IPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 170 ~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~ 249 (306)
.||..=+|. .+.++..++++.+.+.|+..|-++-++ |..++.++++++.+.--++++|.|.|.++++.+++.
T Consensus 15 ~~iipvlr~-~~~~~a~~~~~al~~~Gi~~iEitl~t-------p~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~a 86 (213)
T d1wbha1 15 GPVVPVIVV-KKLEHAVPMAKALVAGGVRVLNVTLRT-------ECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEA 86 (213)
T ss_dssp CSEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEESCS-------TTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHH
T ss_pred CCEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHC
Confidence 366666664 567889999999999999999998664 457899999999985458999999999999999997
Q ss_pred hh
Q psy4398 250 NC 251 (306)
Q Consensus 250 ~v 251 (306)
|+
T Consensus 87 Ga 88 (213)
T d1wbha1 87 GA 88 (213)
T ss_dssp TC
T ss_pred CC
Confidence 65
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=95.29 E-value=0.11 Score=43.42 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=68.8
Q ss_pred ceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEecc--
Q psy4398 103 KIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRV-- 178 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~-- 178 (306)
.+++.|.+.+.+++.+.++.+. .|+|.||+=+ |-+- -..+.+.+.++++.+++.+ ++|+.+=+|.
T Consensus 17 kIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~Rl---------D~l~--~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~ 85 (252)
T d1gqna_ 17 KIIVSLMGRDINSVKAEALAYREATFDILEWRV---------DHFM--DIASTQSVLTAARVIRDAMPDIPLLFTFRSAK 85 (252)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEG---------GGCS--CTTCHHHHHHHHHHHHHHCTTSCEEEECCBGG
T ss_pred EEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEE---------cccc--ccCCHHHHHHHHHHHHHhcCCCCEEEEEechh
Confidence 4888999999999987777776 4999999943 3220 0135678899999998877 5899998886
Q ss_pred --C---CChHHHHHHHHHHHHcC-CcEEEEc
Q psy4398 179 --F---HNEADTIALCKRLEACG-IIAIGVH 203 (306)
Q Consensus 179 --g---~~~~~~~~~a~~l~~~G-~d~i~v~ 203 (306)
| .+.++-.++.+.+.+.| +|+|.+.
T Consensus 86 eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiE 116 (252)
T d1gqna_ 86 EGGEQTITTQHYLTLNRAAIDSGLVDMIDLE 116 (252)
T ss_dssp GTCSBCCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred hCCCCCCCHHHHHHHHHHHHHcCCCceEecc
Confidence 1 24556788888888888 8999984
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.08 E-value=0.68 Score=37.75 Aligned_cols=129 Identities=23% Similarity=0.316 Sum_probs=81.5
Q ss_pred HHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCc
Q psy4398 120 AKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGII 198 (306)
Q Consensus 120 a~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d 198 (306)
|++++. |+-.|.--=--|.. .|+++ |-+-+.+|..+.++.++ +.+|+..|.|+|- .--++.|++.|+|
T Consensus 14 A~iAe~aGAvaVmaLervpad-iR~~G-GvaRm~dp~~i~ei~~~----vsipvmak~righ-----~~eaqiLe~~~vd 82 (254)
T d1znna1 14 AKIAEAAGAVAVMALERVPAD-IRAAG-GVARMADPTVIEEVMNA----VSIPVMAKVRIGH-----YVEARVLEALGVD 82 (254)
T ss_dssp HHHHHHHTCSEEEECC----------C-CCCCCCCHHHHHHHHHH----CSSCEEEEEETTC-----HHHHHHHHHHTCS
T ss_pred HHHhhccCceeEeeeccCCHH-HHhcC-CcccCCCHHHHHHHHHh----cccccccccCCCc-----hHHHHhHHhhCCC
Confidence 455654 77666432223443 23333 55667899887776554 5899999999764 2446788888999
Q ss_pred EEEEcc------------------------cC---------------C-CC----CC---------------------CC
Q psy4398 199 AIGVHG------------------------RT---------------K-AE----RP---------------------RH 213 (306)
Q Consensus 199 ~i~v~~------------------------~~---------------~-~~----~~---------------------~~ 213 (306)
++.=+. |+ + ++ ++ ..
T Consensus 83 ~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i~~~~~m~~ 162 (254)
T d1znna1 83 YIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSE 162 (254)
T ss_dssp EEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCG
T ss_pred cccHhHhcccccHHHhhcccceeeeeeCCCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcCCH
Confidence 986221 00 0 00 00 00
Q ss_pred ----------CCcHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 214 ----------RNRIEMIRTLTQH--LKIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 214 ----------p~~~~~v~~i~~~--~~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
-..++++.++.+. +++|+++.|||.++.|+..+.+.| +-+|++++.
T Consensus 163 ~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~ 223 (254)
T d1znna1 163 DELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFK 223 (254)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGG
T ss_pred HHHHHHHHhhCCchHHHHHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhc
Confidence 0235677777764 589999999999999999999874 589999976
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=95.00 E-value=0.016 Score=49.80 Aligned_cols=124 Identities=13% Similarity=0.067 Sum_probs=70.8
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-C------CC-hHHHHHHHHHHHHc
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-F------HN-EADTIALCKRLEAC 195 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g------~~-~~~~~~~a~~l~~~ 195 (306)
..|+|+|-+.+-... +.. -....+.+.++.++.+ ..++|+.+-+=. + .+ ++.....++.+.+.
T Consensus 117 ~~GadaVk~lv~~~~-----d~~---~e~~~~~~~~l~~~c~-~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~ 187 (291)
T d1to3a_ 117 RDGAKALKLLVLWRS-----DED---AQQRLNMVKEFNELCH-SNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDS 187 (291)
T ss_dssp HTTCCEEEEEEEECT-----TSC---HHHHHHHHHHHHHHHH-TTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTS
T ss_pred hccCceEEEEEeeCC-----ccc---HHHHHHHHHHHHHHHH-HcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhc
Confidence 359999888644211 100 0111233344444332 348898876432 1 12 22367888999999
Q ss_pred CCcEEEEcccCCCCCCCCCCc---HHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHHh-------hhhhccccCCCC
Q psy4398 196 GIIAIGVHGRTKAERPRHRNR---IEMIRTLTQHLKIP-VIANGGSKEIVDYGGVFSL-------NCAFLRNHYPVE 261 (306)
Q Consensus 196 G~d~i~v~~~~~~~~~~~p~~---~~~v~~i~~~~~ip-via~GGI~s~~~~~~~l~~-------~v~vGrall~~p 261 (306)
|+|.+-+--... ..... .....++.....+| |+.+||. +.++..+.++. |+.+||.++++|
T Consensus 188 GaDi~K~~~p~~----~~~~~~~~~~~~~~~~~~~~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~~~ 259 (291)
T d1to3a_ 188 GADLYKVEMPLY----GKGARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSSV 259 (291)
T ss_dssp SCSEEEECCGGG----GCSCHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGGG
T ss_pred CCcEEEEecCCC----chhhhHHHHHHHHHHhhcCCCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhhCc
Confidence 999987642110 01122 33456666677899 6666776 45556555542 459999999887
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.07 Score=43.06 Aligned_cols=117 Identities=7% Similarity=0.123 Sum_probs=78.2
Q ss_pred ceEEEecCCCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc-cccEEEEeccCC
Q psy4398 103 KIILQIGTADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL-SIPVSCKIRVFH 180 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~g~ 180 (306)
+....|.-.+|+++++-++.+. +||..+-|.+|-. . -.+.++++|+.+ +..+.+-...+|
T Consensus 7 ~~~~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~~--------------~----d~~~i~~ir~~~~d~~l~vDaN~~~ 68 (208)
T d1jpdx1 7 ITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH--------------L----ISERMVAIRTAVPDATLIVDANESW 68 (208)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSS--------------C----HHHHHHHHHHHCTTSEEEEECTTCC
T ss_pred eeeeEcCCCCHHHHHHHHHHHHHCCCCEEEEECCCC--------------c----HHHHHHHHHHhccccEEEEeccccc
Confidence 3445566678999988887664 6999999975521 1 245677778777 344444444478
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l 247 (306)
+.+++.++++.+++.+..++- ++. .+.+++..+++++ ++||.+.-++.+..+++.+.
T Consensus 69 s~~~A~~~~~~l~~~~l~~iE-------eP~-~~~d~~~~~~l~~--~~pi~~~E~~~~~~~~~~l~ 125 (208)
T d1jpdx1 69 RAEGLAARCQLLADLGVAMLE-------QPL-PAQDDAALENFIH--PLPICADESCHTRSNLKALK 125 (208)
T ss_dssp CSTTHHHHHHHHHHTTCCEEE-------CCS-CTTSCGGGGSSCC--SSCEEESTTCSSGGGHHHHB
T ss_pred chhHHHHHHHHHHhccccccC-------ccC-CccCHHHHHhhhc--ccceecCCCcCCHHHHHHHh
Confidence 889999999999999998874 111 1223333344432 56888888888888777653
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=94.82 E-value=0.14 Score=43.24 Aligned_cols=126 Identities=10% Similarity=0.117 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc--cccEEEEeccCCChHHHHH
Q psy4398 111 ADPERALEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL--SIPVSCKIRVFHNEADTIA 187 (306)
Q Consensus 111 ~~~~~~~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~ 187 (306)
-|.+.+.+..+.+. .|+++|=++.+. |-...-..+.-.++++.+.+.+ .+|+.+-+.. .+.+++.+
T Consensus 20 iD~~~l~~~i~~l~~~Gv~gi~~~G~t----------GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~s~~~~i~ 88 (295)
T d1hl2a_ 20 LDKASLRRLVQFNIQQGIDGLYVGGST----------GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGC-VSTAESQQ 88 (295)
T ss_dssp BCHHHHHHHHHHHHHHTCSEEEESSGG----------GTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECeEc----------cchhhCCHHHHHHHHhhhHHhhccccceeecccc-chhhHHHH
Confidence 46677888777664 599999997432 2222223333455566555554 4688887663 56788999
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEe------cCCCCHHHHHHHHH
Q psy4398 188 LCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIAN------GGSKEIVDYGGVFS 248 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~------GGI~s~~~~~~~l~ 248 (306)
+++.+++.|+|++.+....... .....-.++..++.+.. ++|++.- |---+++...++.+
T Consensus 89 ~a~~a~~~Gad~~~v~~p~~~~-~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~ 155 (295)
T d1hl2a_ 89 LAASAKRYGFDAVSAVTPFYYP-FSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVT 155 (295)
T ss_dssp HHHHHHHHTCSEEEEECCCSSC-CCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred HHHHHHhcCCceeeeeeccccC-CChHHHHHHHHHHhcccCcCccccccccccccccccccccccccc
Confidence 9999999999999987543211 11111233444555444 6677643 22345666666543
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=94.68 E-value=0.43 Score=39.39 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=70.3
Q ss_pred hcCCCEEEEc--cCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-C------CChHHHHHHHHHHHH
Q psy4398 124 EHDVAAIDIN--MGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-F------HNEADTIALCKRLEA 194 (306)
Q Consensus 124 ~~g~d~veln--~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-g------~~~~~~~~~a~~l~~ 194 (306)
..|+|+|-++ .+++.. .+..+.+.+++++..+ .++|+.+-.-. + .+.+.....++.+.+
T Consensus 101 rlGadaV~~~v~~g~~~e-----------~~~l~~~~~v~~e~~~-~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~E 168 (251)
T d1ojxa_ 101 SLGASAVGYTIYPGSGFE-----------WKMFEELARIKRDAVK-FDLPLVVWSYPRGGKVVNETAPEIVAYAARIALE 168 (251)
T ss_dssp HTTCSEEEEEECTTSTTH-----------HHHHHHHHHHHHHHHH-HTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHH
T ss_pred hchhceEEEEEeCCCCch-----------HHHHHHHHHHHHHHHH-cCCeEEEEEeecCCccccCCCHHHHHHHHHHHHH
Confidence 4599987665 343331 0123344444444332 38998766543 1 133446777899999
Q ss_pred cCCcEEEEcccCCCCCCCCCCcHHHHHHHH-hhCCCcEEEecCCC--CHHHHHHH----HHh---hhhhccccCCCC
Q psy4398 195 CGIIAIGVHGRTKAERPRHRNRIEMIRTLT-QHLKIPVIANGGSK--EIVDYGGV----FSL---NCAFLRNHYPVE 261 (306)
Q Consensus 195 ~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~-~~~~ipvia~GGI~--s~~~~~~~----l~~---~v~vGrall~~p 261 (306)
.|+|.+-+. | |.+.+...++. ....+||+..||-. +.++.-+. ++. |+.+||.+++.+
T Consensus 169 lGaDivK~~-------~--p~~~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~ 236 (251)
T d1ojxa_ 169 LGADAMKIK-------Y--TGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRR 236 (251)
T ss_dssp HTCSEEEEC-------C--CSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTST
T ss_pred hCCCEEEec-------C--CCcHHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcC
Confidence 999999873 2 22445555544 45578988888854 45554333 333 459999998755
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=94.42 E-value=0.042 Score=45.09 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=85.3
Q ss_pred ceEEEecCCCHHHHHHHHHHHh-cCCCEEEEcc--C--CCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 103 KIILQIGTADPERALEAAKKVE-HDVAAIDINM--G--CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~-~g~d~veln~--g--cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
.+..+|...+...+.+..+.+. .|+|.+-+.+ | +|+. .+| .++++.+++.++.|+.|=+=
T Consensus 4 ~IspSil~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~-----t~~----------~~~~~~i~~~t~~~~dvHLM 68 (221)
T d1tqja_ 4 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNI-----TIG----------PLIVDAIRPLTKKTLDVHLM 68 (221)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB-----CBC----------HHHHHHHGGGCCSEEEEEEE
T ss_pred EEEechhccCHHHHHHHHHHHHHcCCCEEEEECccCCccCcc-----ccC----------cHhHHhhhhccCcceeeeEE
Confidence 4667888888888888888775 4899766643 2 4442 222 24677777777777766554
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEccc----------------------------CC-------------------CCC
Q psy4398 178 VFHNEADTIALCKRLEACGIIAIGVHGR----------------------------TK-------------------AER 210 (306)
Q Consensus 178 ~g~~~~~~~~~a~~l~~~G~d~i~v~~~----------------------------~~-------------------~~~ 210 (306)
. .+...+++.+.++|++.+++|.- |. ..+
T Consensus 69 v----~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~~~d~vlvM~V~pG 144 (221)
T d1tqja_ 69 I----VEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPG 144 (221)
T ss_dssp S----SSGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC-
T ss_pred E----eCHHHHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHhhhcEEEEEEecCC
Confidence 2 11223455555666666665531 10 111
Q ss_pred CCC----CCcHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCCc
Q psy4398 211 PRH----RNRIEMIRTLTQH-----LKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEKL 263 (306)
Q Consensus 211 ~~~----p~~~~~v~~i~~~-----~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~~ 263 (306)
+.+ +..++-++++++. .++.|..=|||+ .+++..+.+.|+ .+|++++.++..
T Consensus 145 ~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn-~~~i~~l~~~Gad~~V~GS~if~~~d~ 208 (221)
T d1tqja_ 145 FGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK-PNNTWQVLEAGANAIVAGSAVFNAPNY 208 (221)
T ss_dssp ---CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTTHHHHHHTCCEEEESHHHHTSSCH
T ss_pred CCCcccchhhHHHHHHHHhhhhccccceEEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence 111 2235566665553 257788889998 346777777665 999999987653
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.41 Score=40.50 Aligned_cols=139 Identities=12% Similarity=0.160 Sum_probs=83.0
Q ss_pred CCCceEEEec---CCCHHHHHHHHHHHhc-CCCEEEEccC-CCccccccCCcccc-ccCChHHHHHHHHHHHhcc-c--c
Q psy4398 100 EKNKIILQIG---TADPERALEAAKKVEH-DVAAIDINMG-CPKQFSLTGGMGAA-LLSTPDIACNILTTLISNL-S--I 170 (306)
Q Consensus 100 ~~~p~ivql~---g~~~~~~~~aa~~~~~-g~d~veln~g-cP~~~~~~~~~G~~-l~~~~~~~~eiv~~v~~~~-~--~ 170 (306)
...|+++-.- |+++....+..+.+.+ |+.+|.|-=. -|. +...+++. +....+.+.++ ++..+.. + +
T Consensus 76 ~~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk---~~g~~~~~~~~~~~e~~~ki-~aa~~a~~~~d~ 151 (289)
T d1muma_ 76 CSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAK---RCGHRPNKAIVSKEEMVDRI-RAAVDAKTDPDF 151 (289)
T ss_dssp CCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCS---STTCCSCCCBCCHHHHHHHH-HHHHHTCSSTTS
T ss_pred cCCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCccccc---ccccccccceecHHHHHHHH-HHHHHhcCCcch
Confidence 4679999873 4568888888887764 9999999522 121 11122222 22323333333 3333333 2 2
Q ss_pred cEEEEecc--CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe---cCCCCHHHHHH
Q psy4398 171 PVSCKIRV--FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN---GGSKEIVDYGG 245 (306)
Q Consensus 171 pv~vKir~--g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~---GGI~s~~~~~~ 245 (306)
-|..+.-. ....+++++=+++..++|+|.+-+++. .+.+.++++.+.++.|+..| ||-...-++++
T Consensus 152 ~IiARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~~~---------~~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~~e 222 (289)
T d1muma_ 152 VIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAI---------TELAMYRQFADAVQVPILANITEFGATPLFTTDE 222 (289)
T ss_dssp EEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTC---------CCHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHH
T ss_pred hheeccccccccCHHHHHHHHHHhhhcCCcEEEecCC---------CCHHHHHHHHHhcCCCEEEeecCcCCCccchHHH
Confidence 24444432 123567888888999999999987653 35678899999988887553 44332224555
Q ss_pred HHHhhh
Q psy4398 246 VFSLNC 251 (306)
Q Consensus 246 ~l~~~v 251 (306)
+.+.|+
T Consensus 223 L~~~Gv 228 (289)
T d1muma_ 223 LRSAHV 228 (289)
T ss_dssp HHHTTC
T ss_pred HHHhcc
Confidence 555554
|
| >d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]
Probab=94.29 E-value=0.15 Score=43.85 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=71.9
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |.+++++++.+..+.. |+|.|-= ++..|.. .-+.+|.+.+.+.+++..+.++...
T Consensus 17 ~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~la~~~~--------~p~~eRv~~~~~a~~~a~~~TG~~~ 88 (307)
T d1geha1 17 KDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWY--------NRFEERAEIMAKIIDKVENETGEKK 88 (307)
T ss_dssp CSSCEEEECCSSCSSCCHHHHHHHHHHHHHTTCCEEECCTTCCCCTT--------SCHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred CCCceEEeeeCCcCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCCC--------CcHHHHHHHHHHHHHHHHHHhCCee
Confidence 4678888874 7789999999887765 8888754 4443331 2455677788888888888887665
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+-++.+.++|++++.+.
T Consensus 89 lYa~NiT~~~~em~~ra~~a~~~G~~~vmi~ 119 (307)
T d1geha1 89 TWFANITADLLEMEQRLEVLADLGLKHAMVD 119 (307)
T ss_dssp EEECBCCSSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEEccCChHHHHHHHHHHHHcCCCEEEEe
Confidence 5555554667889999999999999999874
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=94.24 E-value=0.21 Score=42.31 Aligned_cols=96 Identities=7% Similarity=-0.054 Sum_probs=69.3
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.++|++..+. |-+++++++++..+.. |.|.|-= |++.|.. ..+.+|.+.+.+.+++..+.++...
T Consensus 17 ~~RPL~~tiiKPk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~--------~p~~eRv~~~~~a~~~a~~~TG~~~ 88 (283)
T d1ykwa1 17 HGRPIFFGVVKPNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVTW--------SSIEERAAHLGKARRKAEAETGEPK 88 (283)
T ss_dssp CSSCEEEEECSSCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTT--------BCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCCC--------ccHHHHHHHHHHHHHHHHHHhCCee
Confidence 4678998885 7789999999987765 8898854 4443321 2345667777777777777776544
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+-++.+.+.|++++.+.
T Consensus 89 lya~NiT~~~~em~~ra~~~~~~G~~~~mv~ 119 (283)
T d1ykwa1 89 IYLANITDEVDSLMEKHDVAVRNGANALLIN 119 (283)
T ss_dssp EEEEECCCCGGGHHHHHHHHHHHTCCEEEEE
T ss_pred EEeeecCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 4334433677889999999999999999874
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=94.22 E-value=0.13 Score=41.52 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=58.3
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~ 249 (306)
|+..=+|. .+.++...+++.+.+.|+..+-++-|+ |..++.++++++.. .--+++.|-|.|.++++.++++
T Consensus 10 ~iipvlr~-~~~~~a~~~~~al~~~Gi~~iEitlr~-------p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~a 81 (202)
T d1wa3a1 10 KIVAVLRA-NSVEEAKEKALAVFEGGVHLIEITFTV-------PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVES 81 (202)
T ss_dssp CEEEEECC-SSHHHHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHH
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHcCCCEEEEecCC-------ccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhh
Confidence 44444553 467889999999999999999998654 45678888887654 4558999999999999999997
Q ss_pred hh
Q psy4398 250 NC 251 (306)
Q Consensus 250 ~v 251 (306)
|+
T Consensus 82 Ga 83 (202)
T d1wa3a1 82 GA 83 (202)
T ss_dssp TC
T ss_pred cc
Confidence 66
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.20 E-value=0.56 Score=37.94 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=43.7
Q ss_pred CcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh---hhccccCCCCCchHH--HHHHHHHh
Q psy4398 215 NRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPVEKLPKT--ILYAHCKY 274 (306)
Q Consensus 215 ~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~p~~~~~--~l~~~~~~ 274 (306)
..++-++++++.. ++.|..=|||+ .+++.++.++|+ .+|++++..+...+. .|++-.++
T Consensus 156 ~~l~KI~~lr~~~~~~~I~VDGGIn-~~~i~~l~~aGad~iV~GS~if~~~d~~~~i~~Lr~~i~k 220 (221)
T d1tqxa_ 156 DMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQK 220 (221)
T ss_dssp GGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhcCCcceEEEcccC-HHhHHHHHHcCCCEEEEChHHHCCCCHHHHHHHHHHHHhh
Confidence 4678888888876 67888889997 678999998876 999999976643332 55554443
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=94.15 E-value=0.035 Score=45.46 Aligned_cols=140 Identities=11% Similarity=0.118 Sum_probs=77.8
Q ss_pred CceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccc---------cccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 102 NKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQF---------SLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 102 ~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~---------~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.|++.=|...++++..+.++.+.+ |+..||+-+..|+.. ...-..|..-..+++.+.+.+++ +..
T Consensus 17 ~~iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~a-----Ga~ 91 (216)
T d1mxsa_ 17 ARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAA-----GAQ 91 (216)
T ss_dssp HSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHH-----TCS
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhC-----CCC
Confidence 367777888999999999997765 999999987766520 00000111111223322222211 111
Q ss_pred EEEEeccCCChHHHHHHHHH--------------------HHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCc
Q psy4398 172 VSCKIRVFHNEADTIALCKR--------------------LEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIP 230 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~--------------------l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ip 230 (306)
+. ++++.+ .++++. +.++|++.+-+..-.. -....+++.++.-+ +++
T Consensus 92 Fi--vsP~~~----~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~------~~g~~~ikal~~p~p~~~ 159 (216)
T d1mxsa_ 92 FV--VTPGIT----EDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEI------SGGVAAIKAFGGPFGDIR 159 (216)
T ss_dssp SE--ECSSCC----HHHHHHHHHCSSCEECEECSHHHHHHHHTTTCCEEEETTHHH------HTHHHHHHHHHTTTTTCE
T ss_pred EE--ECCCCc----HHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEeccccc------cccHHHHHHHhcccccCc
Confidence 11 111111 222333 3345666665542110 01346888888877 799
Q ss_pred EEEecCCCCHHHHHHHHHhh---hhhccccCC
Q psy4398 231 VIANGGSKEIVDYGGVFSLN---CAFLRNHYP 259 (306)
Q Consensus 231 via~GGI~s~~~~~~~l~~~---v~vGrall~ 259 (306)
++.+|||+ .+++.+.++.+ +..|+.++.
T Consensus 160 fiptGGV~-~~n~~~yl~~~~v~avggs~l~~ 190 (216)
T d1mxsa_ 160 FCPTGGVN-PANVRNYMALPNVMCVGTTWMLD 190 (216)
T ss_dssp EEEBSSCC-TTTHHHHHHSTTBCCEEECTTSC
T ss_pred eeccCCCC-HHHHHHHHhcCCeEEEEccccCC
Confidence 99999997 57888888753 244555553
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.10 E-value=0.13 Score=43.08 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=38.9
Q ss_pred HHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEec
Q psy4398 114 ERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIR 177 (306)
Q Consensus 114 ~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir 177 (306)
+...+.|+ .+++|+|.+++|.+-|. .+..+.+.++++.+.+.+++|+++--+
T Consensus 40 d~~~~~A~~qv~~GA~iLDIn~~~~~------------~~e~~~m~~li~~l~~~~d~PlsIDT~ 92 (260)
T d3bofa1 40 EIVIKEAKTQVEKGAEVLDVNFGIES------------QIDVRYVEKIVQTLPYVSNVPLSLDIQ 92 (260)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSSGG------------GSCHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCch------------hhhHHHHHHHHHHHHhcCCCCccccCC
Confidence 44444444 44569999999977543 245778899999999999999998766
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=94.06 E-value=0.34 Score=40.15 Aligned_cols=163 Identities=13% Similarity=0.031 Sum_probs=96.7
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCcccccc-CCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLT-GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~-~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
...|+..|.+++..+.-... +..+++.+. |.+-.+-+ .+ +..|..+...++.+.+.|++++...+.-+.+.+-.
T Consensus 5 ~~VP~~g~~g~~~~~~~e~m---I~~~a~~~~-~~~~~~lk-~kvG~~g~~~~e~~~~~~~rI~~~r~~~G~~~~i~iD~ 79 (251)
T d1kkoa1 5 EAIPLFGQSGDDRYIAVDKM---ILKGVDVLP-HALINNVE-EKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDV 79 (251)
T ss_dssp CCCCEECCCTTCTTHHHHHH---HHTTCSEEE-ETTCCCCC-CCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEEC
T ss_pred CCcccccccCCCcccchHHH---HHhhhHHHH-HHHHHHHH-HHhCCCCCCcHHHHHHHHHHHHHHHhCcCCCcceeecc
Confidence 45788878877665432222 223444432 21111100 11 12234444455666677777777765444444432
Q ss_pred --------CCChHHHHHHHHHHHHcCCcE-EEEcccCCCCCCC---CCCcHHHHHHHHhhC-----CCcEEEecCCCCHH
Q psy4398 179 --------FHNEADTIALCKRLEACGIIA-IGVHGRTKAERPR---HRNRIEMIRTLTQHL-----KIPVIANGGSKEIV 241 (306)
Q Consensus 179 --------g~~~~~~~~~a~~l~~~G~d~-i~v~~~~~~~~~~---~p~~~~~v~~i~~~~-----~ipvia~GGI~s~~ 241 (306)
+|+.+++.++.+.|++.+.++ +-+- ++.. .+.+++..+++++.+ ++||++-=.+.|.+
T Consensus 80 ~~~~~~~~~~~~~~ai~~l~~L~~~~~~~~l~IE-----qP~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~~~t~~ 154 (251)
T d1kkoa1 80 YGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIE-----GPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQ 154 (251)
T ss_dssp TTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEEE-----CCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHH
T ss_pred ccccccccCCCHHHHHHHHHHHHHhcCCCceeec-----CCcccccchHHHHHHHHHHHHHhccCCCceEeccceeCCHH
Confidence 588888999999999887765 2231 1211 123567777777653 68998888899999
Q ss_pred HHHHHHHhhh---------hhccccCCCCCchHHHHHHHHHhcCCC
Q psy4398 242 DYGGVFSLNC---------AFLRNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 242 ~~~~~l~~~v---------~vGrall~~p~~~~~~l~~~~~~~g~~ 278 (306)
+++++++.+. ++|. ...-+.+-++.+++|+.
T Consensus 155 d~~~~i~~~a~d~v~iK~~k~GG------i~~a~~~~~~A~~~Gi~ 194 (251)
T d1kkoa1 155 DIVDFTDAGSCHMVQIKTPDLGG------IHNIVDAVLYCNKHGME 194 (251)
T ss_dssp HHHHHHHTTCCSEEEECGGGGSS------THHHHHHHHHHHHHTCE
T ss_pred HHHHHHHhCCccceeccccccCC------HHHHHHHHHHHHHCCCe
Confidence 9999988633 3322 12334777889999987
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=93.96 E-value=0.11 Score=43.47 Aligned_cols=155 Identities=10% Similarity=0.026 Sum_probs=91.7
Q ss_pred CCceEEEecCCCHHHHHHHHH-HHh---c-CCCEEEEccCCCccccccCCccccccCChHHHH---HHHHHHHhcccccE
Q psy4398 101 KNKIILQIGTADPERALEAAK-KVE---H-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIAC---NILTTLISNLSIPV 172 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~-~~~---~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~---eiv~~v~~~~~~pv 172 (306)
..|+..|.++.......++.. .+. + ++..+.+. .|.....+.+.+. +-|++++...+.-+
T Consensus 6 ~VPiy~~~G~~~~~~~d~~i~k~~~~~~~~~~~~vK~K------------~G~~~~~~~e~~~~i~~rI~~~r~~~g~~~ 73 (253)
T d1kcza1 6 AVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEK------------LGLKGEKLLEYVKWLRDRIIKLRVREDYAP 73 (253)
T ss_dssp CCCEECCCTTCTTHHHHHHHHTTCSEEEECCCCCCCCC------------CCTTSHHHHHHHHHHHHHHHHHCSSTTCCC
T ss_pred CCCeeeccCCcccccHHHHHHHHhhhhhhhhhhhhchh------------cCCCccccHHHHHHHHHHHHHHhcccccCc
Confidence 468888887665544433322 221 1 34444443 3333334444444 44445555554444
Q ss_pred EEEecc--------CCChHHHHHHHHHHHHcCCcEE-EEcccCCCCCCCC---CCcHHHHHHHHhh-----CCCcEEEec
Q psy4398 173 SCKIRV--------FHNEADTIALCKRLEACGIIAI-GVHGRTKAERPRH---RNRIEMIRTLTQH-----LKIPVIANG 235 (306)
Q Consensus 173 ~vKir~--------g~~~~~~~~~a~~l~~~G~d~i-~v~~~~~~~~~~~---p~~~~~v~~i~~~-----~~ipvia~G 235 (306)
.+.+-. +|+.++++++.+.|++.+.++- -+- ++... +..++..+++++. .++||++-=
T Consensus 74 ~l~iD~~~~~~~n~~~~~~eai~~~~~L~~~~~~y~i~iE-----qP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE 148 (253)
T d1kcza1 74 IFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIE-----GPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADE 148 (253)
T ss_dssp EEEEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTSCEEEE-----CSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECT
T ss_pred eeeehhhhccCccCCCCHHHHHHHHHHHHHhcCCCCceEe-----cCCCCccHhhHHHHHHHHHHHHhccCCccceeccc
Confidence 444432 5889999999999999877652 232 22211 1124566777766 368888887
Q ss_pred CCCCHHHHHHHHHhhh---------hhccccCCCCCchHHHHHHHHHhcCCC
Q psy4398 236 GSKEIVDYGGVFSLNC---------AFLRNHYPVEKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 236 GI~s~~~~~~~l~~~v---------~vGrall~~p~~~~~~l~~~~~~~g~~ 278 (306)
.+++.+++.++++..+ .+|. ...-+.+-++.+++|+.
T Consensus 149 ~~~~~~d~~~~i~~~a~d~v~iK~~k~GG------i~~al~~~~~a~~~Gi~ 194 (253)
T d1kcza1 149 WCNTVEDVKFFTDNKAGHMVQIKTPDLGG------VNNIADAIMYCKANGMG 194 (253)
T ss_dssp TCCSHHHHHHHHHTTCSSEEEECTGGGSS------THHHHHHHHHHHHTTCE
T ss_pred cccCHHHHHHHHHhCCcCeeeccccccCC------HHHHHHHHHHHHHcCCc
Confidence 8999999999998643 2222 23334788889999987
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.55 Score=38.87 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=79.2
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.|+|+|=|-..+ -.++.+.++++..+ ..+.-+.|-+. + .+-++.+.+.|++.|-|..
T Consensus 129 ~GADavLLI~~~---------------L~~~~l~~l~~~a~-~lgl~~LVEvh---~----~~El~~a~~~~a~iIGINn 185 (254)
T d1piia2 129 YQADACLLMLSV---------------LDDDQYRQLAAVAH-SLEMGVLTEVS---N----EEEQERAIALGAKVVGINN 185 (254)
T ss_dssp TTCSEEEEETTT---------------CCHHHHHHHHHHHH-HTTCEEEEEEC---S----HHHHHHHHHTTCSEEEEES
T ss_pred hccchhhhhHhh---------------hcccHHHHHHHHHH-HHhhhHHHhhc---c----HHHHHHHHhhcccccCccc
Confidence 499999996554 13456677776654 36888888888 2 2234455568999999998
Q ss_pred cCCCCCCCCCCcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCC
Q psy4398 205 RTKAERPRHRNRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEK 262 (306)
Q Consensus 205 ~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~ 262 (306)
|.-...- .+++...++.+.+ +..+|+-+||.+.+|++.+ ..| +-||.+++..|.
T Consensus 186 RnL~tf~---vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l-~~g~davLiGeslm~~~d 244 (254)
T d1piia2 186 RDLRDLS---IDLNRTRELAPKLGHNVTVISESGINTYAQVREL-SHFANGFLIGSALMAHDD 244 (254)
T ss_dssp EETTTTE---ECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHH-TTTCSEEEECHHHHTCSC
T ss_pred cchhhhh---hhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHHH-HcCCCEEEEChHHhCCCC
Confidence 8754333 2556666666666 6789999999999999876 544 599999997664
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=93.68 E-value=0.2 Score=41.87 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHH-hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHH
Q psy4398 111 ADPERALEAAKKV-EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALC 189 (306)
Q Consensus 111 ~~~~~~~~aa~~~-~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a 189 (306)
.+++...+-|+.. ++|+|.||||.+.+ ..+..+.+..++..+++.+++|+++-.+ -.+.+
T Consensus 22 ~d~~~~~~~A~~m~~~GAdiIDIg~g~~------------~~~e~e~~~~vi~~l~~~~~vpiSIDT~-------~~~v~ 82 (262)
T d1f6ya_ 22 RDPAPVQEWARRQEEGGARALDLNVGPA------------VQDKVSAMEWLVEVTQEVSNLTLCLDST-------NIKAI 82 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC----------------CHHHHHHHHHHHHHTTCCSEEEEECS-------CHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCC------------CCCHHHHHHHHHHHHHHhhcCCccccCC-------ccHHH
Confidence 4666777766654 56999999985432 2234566778888888888999998877 13444
Q ss_pred HHHHH--cCCcEEE-EcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEe
Q psy4398 190 KRLEA--CGIIAIG-VHGRTKAERPRHRNRIEMIRTLTQHLKIPVIAN 234 (306)
Q Consensus 190 ~~l~~--~G~d~i~-v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~ 234 (306)
+...+ .|++.|. +++.. ........+.+..+.+++..
T Consensus 83 ~aal~~~~Ga~iINdIsg~~--------~~~~~~~~~~~~~~~~v~~~ 122 (262)
T d1f6ya_ 83 EAGLKKCKNRAMINSTNAER--------EKVEKLFPLAVEHGAALIGL 122 (262)
T ss_dssp HHHHHHCSSCEEEEEECSCH--------HHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhhcccceeechhccc--------chHHHHHHHHhcCCceEEEE
Confidence 44444 5887775 33311 12233344445555555554
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=93.14 E-value=0.34 Score=40.25 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=73.9
Q ss_pred cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcc
Q psy4398 125 HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHG 204 (306)
Q Consensus 125 ~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~ 204 (306)
.|+|+|=|.... ..+ .+.++++.. ..++.-+.|.+. +.+ -++.+.+.|++.|-|..
T Consensus 127 ~GADaVLLIaal--------------l~~--~l~~l~~~A-~~lgl~~LVEvh---~~~----El~~a~~~~a~iIGINn 182 (254)
T d1vc4a_ 127 FGASAALLIVAL--------------LGE--LTGAYLEEA-RRLGLEALVEVH---TER----ELEIALEAGAEVLGINN 182 (254)
T ss_dssp TTCSEEEEEHHH--------------HGG--GHHHHHHHH-HHHTCEEEEEEC---SHH----HHHHHHHHTCSEEEEES
T ss_pred ccchHHHHHHHH--------------HHH--HHHHHHHHH-HHhCCceEEEec---cHH----HHhhhhcCCCCEEEEec
Confidence 499999885332 111 234455443 346888889888 322 23455678999999999
Q ss_pred cCCCCCCCCCCcH-HHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhh---hhhccccCCCCCc
Q psy4398 205 RTKAERPRHRNRI-EMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLN---CAFLRNHYPVEKL 263 (306)
Q Consensus 205 ~~~~~~~~~p~~~-~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~---v~vGrall~~p~~ 263 (306)
|.....-...... ++...+.+.- ++.+|+.+||.+.++++.+ +.| +.+|.+|++.|..
T Consensus 183 RdL~t~~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~~dv~~l-~~g~davLIGesLm~~~d~ 245 (254)
T d1vc4a_ 183 RDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDL 245 (254)
T ss_dssp BCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTT-TTTCSEEEECHHHHTSSCH
T ss_pred cchhhhhcchHHHHHhhhcccccCCCCEEEEccCCCCHHHHHHH-HcCCCEEEEChhhcCCCCH
Confidence 8765444333222 2333343332 6789999999999998765 544 5999999987653
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=93.05 E-value=1.9 Score=35.77 Aligned_cols=209 Identities=13% Similarity=0.079 Sum_probs=104.5
Q ss_pred cccccCCceEEccCCCCCCHHHHHHHHHcCCCEEEecceechhhhhhhhhhh-cccccccccCCCCCceeeecCCCCCCc
Q psy4398 25 ANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVN-DLLNTIDFVDPLDGSVVFRTCPREKNK 103 (306)
Q Consensus 25 ~~l~l~n~i~lAPm~~~t~~~~r~~~~~~G~g~~~te~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~p 103 (306)
..+--.+.+++.|.+ -|..=..++.+.|+-.++|-...... ..+ .++ ++++-....+ ...+.+...+.|
T Consensus 9 r~l~~~~~~~~~p~~--~Da~SAr~~e~aGf~a~~~ss~~~aa-s~G--~pD~~~lt~~e~~~-----~~~~I~~~~~lP 78 (275)
T d1s2wa_ 9 KQMLNSKDLEFIMEA--HNGLSARIVQEAGFKGIWGSGLSVSA-QLG--VRDSNEASWTQVVE-----VLEFMSDASDVP 78 (275)
T ss_dssp HHHHHSSSCEEEEEE--CSHHHHHHHHHHTCSCEEECCHHHHH-TC-----------CHHHHH-----HHHHHHHTCSSC
T ss_pred HHHHhCCCCEEeecC--cCHHHHHHHHHcCCCEEEhhHHHHHH-HcC--CCCCCccchhhHHH-----HHHhhhcccCCc
Confidence 334334567777754 34444445667898777765433211 111 111 1221111100 011122334679
Q ss_pred eEEEec--CCCHHHHHHHHHHHh-cCCCEEEEccC-CCccccccCCccccccCChHHHHHHHHHHHhccccc--EEEEec
Q psy4398 104 IILQIG--TADPERALEAAKKVE-HDVAAIDINMG-CPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP--VSCKIR 177 (306)
Q Consensus 104 ~ivql~--g~~~~~~~~aa~~~~-~g~d~veln~g-cP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p--v~vKir 177 (306)
+++-+- ..++.+..+..+.+. .|+.+|.|.=. .|......++....+....+....+..+.....+.+ |..+.-
T Consensus 79 v~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtD 158 (275)
T d1s2wa_ 79 ILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVE 158 (275)
T ss_dssp EEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEEC
T ss_pred eeEecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEEecch
Confidence 999873 246888888888776 49999999632 222110001111112222333444444443334444 444543
Q ss_pred c---CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHh--hCCCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 178 V---FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQ--HLKIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 178 ~---g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~--~~~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
. +...+++++=++++.++|+|.+-+++.... + +....+.. ...+|+..+.+-...-..+++.+.|+
T Consensus 159 a~~~~~gl~eai~R~~aY~eAGAD~vf~~~~~~~-----~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~eL~~lGv 229 (275)
T d1s2wa_ 159 AFIAGWGLDEALKRAEAYRNAGADAILMHSKKAD-----P---SDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGV 229 (275)
T ss_dssp TTTTTCCHHHHHHHHHHHHHTTCSEEEECCCSSS-----S---HHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTC
T ss_pred hhhhcCCHHHHHHHHHHHHhcCCCeeeeccccCc-----H---HHHHHHHHhhcCCCCEEEecccccccHHHHHHHcCC
Confidence 2 245678999999999999999998765321 1 34333333 34788888754221122345555444
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=92.71 E-value=0.37 Score=41.72 Aligned_cols=177 Identities=11% Similarity=0.088 Sum_probs=105.2
Q ss_pred ccccccccccCC--ceEEccCCCCCCHH-HHHH---HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCC--Cc
Q psy4398 20 ANANQANINYSN--KIILAPMVRMNTLP-FRLL---ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLD--GS 91 (306)
Q Consensus 20 ~~~~~~~l~l~n--~i~lAPm~~~t~~~-~r~~---~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~ 91 (306)
.-++++++++-| .+++|-.|-+-... .... .++.|.-++.-...-+.... ..|..+|. .+
T Consensus 81 t~I~v~gv~iG~~~l~lIAGPC~vES~e~~~~~A~~lke~g~~~~r~g~fKpRtsp------------~sf~g~g~~gL~ 148 (338)
T d1vr6a1 81 TVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSP------------YSFQGLGEKGLE 148 (338)
T ss_dssp CCEECSSCEESTTEEEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCST------------TSCCCCTHHHHH
T ss_pred ceEEeCCEEECCCceEEEecCCCCCCHHHHHHHHHHHHHhCccccccceecccccc------------cccccchHHHHH
Confidence 456778887733 45555555443333 2222 34567666655443321100 01111110 01
Q ss_pred eeeecCCCCCCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc
Q psy4398 92 VVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP 171 (306)
Q Consensus 92 ~~~~~~~~~~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p 171 (306)
.+.+.-.+.+.|++--+... ++...+++ .+|.+.| |+.++++.+++.++- .++.|
T Consensus 149 ~l~~~k~~~glpvvTdV~~~--~~~~~~~e----~~DilQI--------------~A~~~~n~~LL~~~g-----~t~kp 203 (338)
T d1vr6a1 149 YLREAADKYGMYVVTEALGE--DDLPKVAE----YADIIQI--------------GARNAQNFRLLSKAG-----SYNKP 203 (338)
T ss_dssp HHHHHHHHHTCEEEEECSSG--GGHHHHHH----HCSEEEE--------------CGGGTTCHHHHHHHH-----TTCSC
T ss_pred HHHHHHhhcCceeEEeccch--hhhhhhhc----eeeeEEe--------------chhhccCHHHHHHhh-----ccCCc
Confidence 11222223467787776432 23333333 3688888 567778877765543 36899
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCC---CCCCCCCCcHHHHHHHHhhCCCcEEE
Q psy4398 172 VSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTK---AERPRHRNRIEMIRTLTQHLKIPVIA 233 (306)
Q Consensus 172 v~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~---~~~~~~p~~~~~v~~i~~~~~ipvia 233 (306)
|.+|-....+.+++...++.+...|..-|.+.-|.. .+......++..+..+++....|||.
T Consensus 204 V~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~lD~~~i~~~k~~~~lPVi~ 268 (338)
T d1vr6a1 204 VLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILV 268 (338)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEE
T ss_pred EEecCccccchhhhhhhHHHHHhcCCccceeeeccccccccccccchhhcccceeeccccCceee
Confidence 999999878899999999999999998888765542 11122234777888888888999986
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=92.35 E-value=0.54 Score=37.32 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=72.5
Q ss_pred EEecCCC-HHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHH
Q psy4398 106 LQIGTAD-PERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD 184 (306)
Q Consensus 106 vql~g~~-~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~ 184 (306)
+-|+|-+ +++.. ..++.|+|.+-+++.-++++. =.++.+.++++.+...+ .+|.|=.. .+
T Consensus 3 iKICGit~~ed~~---~~~~~gad~iGfif~~~SpR~----------vs~~~a~~i~~~~~~~~-~~V~Vf~~--~~--- 63 (200)
T d1v5xa_ 3 VKICGITRLEDAL---LAEALGAFALGFVLAPGSRRR----------IAPEAARAIGEALGPFV-VRVGVFRD--QP--- 63 (200)
T ss_dssp EEECCCCCHHHHH---HHHHHTCSEEEEECCTTCTTB----------CCHHHHHHHHHHSCSSS-EEEEEESS--CC---
T ss_pred EEEcCCCcHHHHH---HHHhCCCCEEEEEcCCCCCCC----------cCHHHHHHHHHhhcCce-eeeeeeee--ch---
Confidence 4566654 33322 222348999999884323211 14667777766654332 23333333 33
Q ss_pred HHHHHHHHHHcCCcEEEEcccCC----------------------------------------CCCCCCCCcHHHHHHHH
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTK----------------------------------------AERPRHRNRIEMIRTLT 224 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~----------------------------------------~~~~~~p~~~~~v~~i~ 224 (306)
..++.+.+++.+.|.+.+|+... .+......+|.|...+.
T Consensus 64 ~~~i~~~~~~~~~d~vQlHg~e~~~~~~~l~~~~~iik~~~~~~~~~~~~~~~~~~~~L~D~~~~g~g~~~~~~~~~~~~ 143 (200)
T d1v5xa_ 64 PEEVLRLMEEARLQVAQLHGEEPPEWAEAVGRFYPVIKAFPLEGPARPEWADYPAQALLLDGKRPGSGEAYPRAWAKPLL 143 (200)
T ss_dssp HHHHHHHHHHTTCSEEEECSCCCHHHHHHHTTTSCEEEEEECSSSCCGGGGGSSCSEEEEECSSTTSCCCCCGGGGHHHH
T ss_pred hhhhhhhhcccccccccccccCCHHHHHHHhhccccceeeccCchhhHHHhhcchhheeecccccCcccccchHHHhhhh
Confidence 34556677889999999997431 00001123555554443
Q ss_pred hhCCCcEEEecCCCCHHHHHHHHHh---hhhhcccc
Q psy4398 225 QHLKIPVIANGGSKEIVDYGGVFSL---NCAFLRNH 257 (306)
Q Consensus 225 ~~~~ipvia~GGI~s~~~~~~~l~~---~v~vGral 257 (306)
. ...|++.+|||+ +++++++++. ++-+.+++
T Consensus 144 ~-~~~~~~LAGGl~-~~Nv~~~~~~~p~gvDvsSGv 177 (200)
T d1v5xa_ 144 A-TGRRVILAGGIA-PENLEEVLALRPYALDLASGV 177 (200)
T ss_dssp H-TTSCEEECSSCC-STTHHHHHHHCCSEEEESGGG
T ss_pred h-ccCceEecCCCC-HHHHHHHHhcCCCEEEEcCce
Confidence 3 357999999987 5566666653 45444444
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.04 E-value=1.7 Score=35.73 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=63.6
Q ss_pred HHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc-------CCChHHHHH
Q psy4398 116 ALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV-------FHNEADTIA 187 (306)
Q Consensus 116 ~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~-------g~~~~~~~~ 187 (306)
+.++.+.+++ ||+.||++-|+ +.-..+...++++.+++. +.-|..-+.. -.+.++.++
T Consensus 87 ~~~y~~~~~~lGf~~iEiSdg~-------------~~i~~~~~~~~I~~~~~~-G~~V~~EvG~K~~~~~~~~~~~~~i~ 152 (251)
T d1qwga_ 87 FDEFLNECEKLGFEAVEISDGS-------------SDISLEERNNAIKRAKDN-GFMVLTEVGKKMPDKDKQLTIDDRIK 152 (251)
T ss_dssp HHHHHHHHHHHTCCEEEECCSS-------------SCCCHHHHHHHHHHHHHT-TCEEEEEECCSSHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCCc-------------cCCCHHHHHHHHHHHHhC-CCEEeecccCCCCCCccccCHHHHHH
Confidence 4555566665 99999997432 112334456677776553 3333333321 124566888
Q ss_pred HHHHHHHcCCcEEEEcccCCC---CCC--CCCCcHHHHHHHHhhCCC
Q psy4398 188 LCKRLEACGIIAIGVHGRTKA---ERP--RHRNRIEMIRTLTQHLKI 229 (306)
Q Consensus 188 ~a~~l~~~G~d~i~v~~~~~~---~~~--~~p~~~~~v~~i~~~~~i 229 (306)
.++...++|++.|.+.+|... +-+ .+....+.+..|.+.++.
T Consensus 153 ~~~~~LeaGA~~ViiEarEsg~~~Gi~~~~g~~r~~~i~~i~~~l~~ 199 (251)
T d1qwga_ 153 LINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDI 199 (251)
T ss_dssp HHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCG
T ss_pred HHHHHHHCCCceeEeehhhcCCccceecCCCChhHHHHHHHHHhCCc
Confidence 899999999999999988643 222 234567888999888753
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.86 E-value=2.3 Score=33.55 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=57.3
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE--EEeccCC
Q psy4398 103 KIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS--CKIRVFH 180 (306)
Q Consensus 103 p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~--vKir~g~ 180 (306)
++++-|=..+.++..+.++.+..+.+.|++++.- - ..+| + +.++.+++..+.+++ .|+- .
T Consensus 4 ki~lAlD~~~~~~a~~l~~~~~~~v~~iKig~~l--~----~~~G------~----~~v~~l~~~~~~~i~~D~K~~--D 65 (212)
T d1km4a_ 4 RLILAMDLMNRDDALRVTGEVREYIDTVKIGYPL--V----LSEG------M----DIIAEFRKRFGCRIIADFAVA--D 65 (212)
T ss_dssp GEEEEECCSSHHHHHHHHHHHTTTCSEEEEEHHH--H----HHHC------T----HHHHHHHHHHCCEEEEEEEEC--S
T ss_pred CeEEEecCCCHHHHHHHHHHhCCCCcEEEECHHH--H----HhcC------H----HHHHHHHHhcccceehhhhhh--c
Confidence 4666666778888888888777789999997321 0 0122 2 345566666666655 5555 3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEccc
Q psy4398 181 NEADTIALCKRLEACGIIAIGVHGR 205 (306)
Q Consensus 181 ~~~~~~~~a~~l~~~G~d~i~v~~~ 205 (306)
-.......++.+.++|+|.+++|+.
T Consensus 66 Ig~t~~~~~~~~~~~gad~~TVh~~ 90 (212)
T d1km4a_ 66 IPETNEKICRATFKAGADAIIVHGF 90 (212)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred cccHHHHhHhhhccccccEEEEecc
Confidence 3344567788888999999999974
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=91.83 E-value=0.41 Score=38.17 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=74.2
Q ss_pred EEecCCCH-HHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHH
Q psy4398 106 LQIGTADP-ERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEAD 184 (306)
Q Consensus 106 vql~g~~~-~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~ 184 (306)
+.|+|-+. ++... ..+.|+|.+-+.+ .|.+. .| =.++.+.++.+.+... ...|-+-...+.+
T Consensus 4 IKICGit~~~da~~---~~~~gad~iGfI~-~~~Sp----R~-----Vs~~~a~~i~~~~~~~---~~~V~V~v~~~~~- 66 (205)
T d1nsja_ 4 VKICGITNLEDALF---SVESGADAVGFVF-YPKSK----RY-----ISPEDARRISVELPPF---VFRVGVFVNEEPE- 66 (205)
T ss_dssp EEECCCCSHHHHHH---HHHHTCSEEEEEC-CTTCT----TB-----CCHHHHHHHHHHSCSS---SEEEEEESSCCHH-
T ss_pred EEEcCCCcHHHHHH---HHhCCCCEEeEec-cCCCC----Cc-----cCHHHHHHHHhhhccc---ceeeccccccHHH-
Confidence 45677543 33322 2235899999977 54321 11 1466667776655432 2333333224433
Q ss_pred HHHHHHHHHHcCCcEEEEcccCC-----------------------------------------C---CCCCCCCcHHHH
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTK-----------------------------------------A---ERPRHRNRIEMI 220 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~-----------------------------------------~---~~~~~p~~~~~v 220 (306)
++.+.+++.+.|.+.+|+... . ++.....+|..+
T Consensus 67 --~i~~~~~~~~~~~vQlhg~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~GGtG~~~dw~~~ 144 (205)
T d1nsja_ 67 --KILDVASYVQLNAVQLHGEEPIELCRKIAERILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLI 144 (205)
T ss_dssp --HHHHHHHHHTCSEEEECSCCCHHHHHHHHTTSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGT
T ss_pred --HHHhhhhhccccchhccchhhHHHHhhcccceeeeeeccccchHHHHHHhhcccceeeeccccccCCCCCcccchhhc
Confidence 444556677899999987431 0 011123578877
Q ss_pred HHHHhhCCCcEEEecCCCCHHHHHHHHHh----hhhhcccc
Q psy4398 221 RTLTQHLKIPVIANGGSKEIVDYGGVFSL----NCAFLRNH 257 (306)
Q Consensus 221 ~~i~~~~~ipvia~GGI~s~~~~~~~l~~----~v~vGral 257 (306)
+.+... ..|++..|||+ +++.+++++. ++-+-+++
T Consensus 145 ~~~~~~-~~~~~LAGGl~-~~Nv~~ai~~~~p~gvDvsSgv 183 (205)
T d1nsja_ 145 LPYRDR-FRYLVLSGGLN-PENVRSAIDVVRPFAVDVSSGV 183 (205)
T ss_dssp GGGGGG-SSCEEEESSCC-TTTHHHHHHHHCCSEEEESGGG
T ss_pred ccchhc-ccceeeecCCC-HHHHHHHHHHhCCCEEEEcCcc
Confidence 777654 35899999986 6777776653 45444444
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=91.33 E-value=0.47 Score=40.19 Aligned_cols=96 Identities=6% Similarity=-0.065 Sum_probs=71.4
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.+.|++..+. |-+++++++.+..+.. |.|.|-= ++..|. | .-+.+|.+.+.+.+++..+.++...
T Consensus 17 ~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~l~~~~-------~-~p~~eRv~~~~~a~~~a~~~tG~~~ 88 (291)
T d2d69a1 17 KDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFP-------F-NRFEERVRKLYRVRDRVEAETGETK 88 (291)
T ss_dssp CSSCEEEECCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSCBT-------T-BCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCceEEeeeCCcCCCCHHHHHHHHHHHHccCCceecCCccCCCCC-------C-CCHHHHHHHHHHHHHHHHHHhCCee
Confidence 4678888874 7789999999987765 8898753 333322 1 2355677788888888877777666
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+..+.++..+-++.+.++|++++.+.
T Consensus 89 ~Ya~Nit~~~~~m~~ra~~~~~~G~~~vmi~ 119 (291)
T d2d69a1 89 EYLINITGPVNIMEKRAEMVANEGGQYVMID 119 (291)
T ss_dssp EEECBCCSSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 5555544567889999999999999999874
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Probab=91.33 E-value=0.94 Score=39.35 Aligned_cols=140 Identities=11% Similarity=0.081 Sum_probs=86.1
Q ss_pred CCCceEEEecCCCHHH------HHHHH-----HHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcc
Q psy4398 100 EKNKIILQIGTADPER------ALEAA-----KKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNL 168 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~------~~~aa-----~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~ 168 (306)
.+.|+++.|-|..... ..++. +.+..||+-|.+..+. -.+.++.+...++++...+ .
T Consensus 100 ~~VPV~lHLDHg~~~~~~~i~~~idag~~~~~~~~~~gfsSVMiDgS~-----------l~~eeNi~~Tk~vve~Ah~-~ 167 (358)
T d1dosa_ 100 YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSE-----------ESLQENIEICSKYLERMSK-I 167 (358)
T ss_dssp HTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTT-----------SCHHHHHHHHHHHHHHHHH-T
T ss_pred CCCCEEEecCccchhhHHHHHHHHHHHHHHHHHhCCCCCccccCCCCc-----------CCHHHHHHHHHHHHHHHhh-h
Confidence 4689999998764221 12221 1223479999996543 2455677788888877764 4
Q ss_pred cccEEEEecc-C-----------------CChHHHHHHHHH-HHHcCCcEEEEcccCCCCCCCC------C-CcHHHHHH
Q psy4398 169 SIPVSCKIRV-F-----------------HNEADTIALCKR-LEACGIIAIGVHGRTKAERPRH------R-NRIEMIRT 222 (306)
Q Consensus 169 ~~pv~vKir~-g-----------------~~~~~~~~~a~~-l~~~G~d~i~v~~~~~~~~~~~------p-~~~~~v~~ 222 (306)
+++|-.-+.. | -++++...+... ....|+|.|-+.=.+..+.|.+ | ...+..+.
T Consensus 168 gv~VEaElG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~~~tgvD~LAvaiGt~HG~Yk~~~~~l~p~l~~~~~~~ 247 (358)
T d1dosa_ 168 GMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEY 247 (358)
T ss_dssp TCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHHH
T ss_pred CCeEEEeeeeeecccCCccccccchhhccCCHHHHHHHHHHHhccCccceeeeeccchhhhcCCCCccCCchhhHHHHHH
Confidence 7777776553 1 122333333333 3448999998754444444432 1 23466778
Q ss_pred HHhhCCCc-----EEEecCCCC-HHHHHHHHHhhh
Q psy4398 223 LTQHLKIP-----VIANGGSKE-IVDYGGVFSLNC 251 (306)
Q Consensus 223 i~~~~~ip-----via~GGI~s-~~~~~~~l~~~v 251 (306)
+++.+++| ++..||-.. .++.+++++.|+
T Consensus 248 i~~~~~vp~~~~~LVlHGgSGip~e~i~~ai~~GV 282 (358)
T d1dosa_ 248 VSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGV 282 (358)
T ss_dssp HHHHHTCCTTCSCEEECSCTTCCHHHHHHHHHTTE
T ss_pred HHHHhCCCCcccceeccCCCCCcHHHHHHHHHcCC
Confidence 88877777 999988664 566788888775
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=0.65 Score=36.80 Aligned_cols=116 Identities=9% Similarity=0.024 Sum_probs=68.1
Q ss_pred hcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 124 EHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 124 ~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
+.|+|.+-+++.-++++ + =.++.+.++++.++ ..+|.| -...+. .++.+.++..+.|.+.+|
T Consensus 19 ~~gaD~iGfif~~~SpR-----~-----Vs~~~a~~i~~~~~---~~~V~V--fv~~~~---~~i~~~~~~~~~d~iQlH 80 (198)
T d1piia1 19 DAGAIYGGLIFVATSPR-----C-----VNVEQAQEVMAAAP---LQYVGV--FRNHDI---ADVVDKAKVLSLAAVQLH 80 (198)
T ss_dssp HHTCSEEEEECCTTCTT-----B-----CCHHHHHHHHHHCC---CEEEEE--ESSCCH---HHHHHHHHHHTCSEEEEC
T ss_pred hCCCCEEEEEccCCCCC-----C-----cCHHHHHHhhhhcc---ccccee--eeccch---hhHHHhhhcccccceeec
Confidence 35999999988322321 1 14677777766542 122333 322443 455667778889999999
Q ss_pred ccCC-------------------------------------------CCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCH
Q psy4398 204 GRTK-------------------------------------------AERPRHRNRIEMIRTLTQHLKIPVIANGGSKEI 240 (306)
Q Consensus 204 ~~~~-------------------------------------------~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~ 240 (306)
+... .+......+|.++ ......|++.+||| ++
T Consensus 81 G~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lld~~~gGtG~~fdw~~~---~~~~~~~~~LAGGl-~~ 156 (198)
T d1piia1 81 GNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLL---NGQSLGNVLLAGGL-GA 156 (198)
T ss_dssp SCCCHHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSCCCCGGGG---TTSCCTTEEEESSC-CT
T ss_pred CCccHHHHHHHhccccccccceeccchhhhhhHHHhhhhcccccCCcccccceeeehhhh---cccccceeEEecCC-CH
Confidence 8531 0011113467654 33446799999999 57
Q ss_pred HHHHHHHHh---hhhhccccCCCC
Q psy4398 241 VDYGGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 241 ~~~~~~l~~---~v~vGrall~~p 261 (306)
++..++++. ++-+.+++=..|
T Consensus 157 ~Nv~~a~~~~p~gvDvsSGvE~~p 180 (198)
T d1piia1 157 DNCVEAAQTGCAGLDFNSAVESQP 180 (198)
T ss_dssp TTHHHHHTTCCSEEEECGGGEEET
T ss_pred HHHHHHHhcCCCEEEeCCcccCCC
Confidence 888877753 455555554445
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=89.87 E-value=0.34 Score=39.50 Aligned_cols=73 Identities=14% Similarity=0.041 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh--hhhhccccCC
Q psy4398 183 ADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL--NCAFLRNHYP 259 (306)
Q Consensus 183 ~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~--~v~vGrall~ 259 (306)
++....+..-.-.+.....+.... . . .+.+.+..+++.+ ++|++..+||+|+++++++.+. ++.+|+++..
T Consensus 141 ~~~~~~a~~~~~~~~~~~~~~~tg-~--~---~~~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~~~ADgVVVGSAiv~ 214 (229)
T d1viza_ 141 DDIVAYARVSELLQLPIFYLEYSG-V--L---GDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYE 214 (229)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECTT-S--C---CCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHTTCSEEEECTHHHH
T ss_pred HHHHHHHhhccceeEEEEEEeccC-c--c---ccchhHHHHHhhccCcceEEEcccCCHHHHHHHHcCCCEEEECHHHHh
Confidence 444455555555666555544321 1 1 2346677777766 6999999999999999998753 7799999876
Q ss_pred CC
Q psy4398 260 VE 261 (306)
Q Consensus 260 ~p 261 (306)
++
T Consensus 215 ~i 216 (229)
T d1viza_ 215 DF 216 (229)
T ss_dssp CH
T ss_pred hH
Confidence 44
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=89.58 E-value=4.5 Score=32.92 Aligned_cols=181 Identities=10% Similarity=0.094 Sum_probs=97.3
Q ss_pred ccccccccccC--CceEEccCCCCCCHHHHH-H--HHHcCCCEEEecceechhhhhhhhhhhcccccccccCCCCCceee
Q psy4398 20 ANANQANINYS--NKIILAPMVRMNTLPFRL-L--ALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVF 94 (306)
Q Consensus 20 ~~~~~~~l~l~--n~i~lAPm~~~t~~~~r~-~--~~~~G~g~~~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 94 (306)
.++++++++|- .|.+..|..+.+...+.. + +...|++++=- ..+.+... .....+.... +.+.
T Consensus 2 ~~~~v~~~~~g~g~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~---RlD~l~~~-~~~~~l~~~~--------~~lr 69 (252)
T d1gqna_ 2 KTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEW---RVDHFMDI-ASTQSVLTAA--------RVIR 69 (252)
T ss_dssp CCEEETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEE---EGGGCSCT-TCHHHHHHHH--------HHHH
T ss_pred CeEEECCEEecCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEE---EEcccccc-CCHHHHHHHH--------HHHH
Confidence 45677887774 588999999866555432 2 22457777421 11111000 0000000000 0000
Q ss_pred ecCCCCCCceEEEec--------CCCHHHHHHHHHHHh-cC-CCEEEEccCCCccccccCCccccccCChHHHHHHHHHH
Q psy4398 95 RTCPREKNKIILQIG--------TADPERALEAAKKVE-HD-VAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTL 164 (306)
Q Consensus 95 ~~~~~~~~p~ivql~--------g~~~~~~~~aa~~~~-~g-~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v 164 (306)
+.+ .+.|+++-+- ..+.+++.+..+.+. .| +|.|||.+.. ..+.+.++++..
T Consensus 70 ~~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~----------------~~~~~~~li~~a 131 (252)
T d1gqna_ 70 DAM--PDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFT----------------GDADVKATVDYA 131 (252)
T ss_dssp HHC--TTSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGGG----------------CHHHHHHHHHHH
T ss_pred Hhc--CCCCEEEEEechhhCCCCCCCHHHHHHHHHHHHHcCCCceEeccccc----------------cHHHHHHHHHHh
Confidence 000 1345665542 235677777777665 47 7999996443 334556677766
Q ss_pred HhcccccEEEEecc---CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcH---HHHHHHHhhC-CCcEEEec
Q psy4398 165 ISNLSIPVSCKIRV---FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI---EMIRTLTQHL-KIPVIANG 235 (306)
Q Consensus 165 ~~~~~~pv~vKir~---g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~---~~v~~i~~~~-~ipvia~G 235 (306)
++. +..+.+-.-. .|+.++..++.+.+.+.|+|.+-+-..... ....+ ....++++.. ++|+|+-+
T Consensus 132 ~~~-~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~gaDivKia~~a~~----~~D~~~ll~~~~~~~~~~~~~P~I~~~ 204 (252)
T d1gqna_ 132 HAH-NVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQS----KHDVLTLLTATLEMQQHYADRPVITMS 204 (252)
T ss_dssp HHT-TCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEECCSS----HHHHHHHHHHHHHHHHHTCSSCCEEEE
T ss_pred hcC-CCeEEEEecCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCC----HHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 543 4555554442 366778999999999999999987533211 01122 3335555554 68877654
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=89.26 E-value=1.4 Score=35.31 Aligned_cols=124 Identities=10% Similarity=-0.018 Sum_probs=69.9
Q ss_pred HHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcE
Q psy4398 121 KKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIA 199 (306)
Q Consensus 121 ~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~ 199 (306)
..+. .|++.+-|..+ . ++.. .....+.++...+. +..+.+-+. . ...++.+.+.+.+.
T Consensus 81 ~~l~~~g~~~~iiGHS----E-rr~~--------~~e~~~~i~~~~~~-gl~~i~cv~--~-----~~~~~~~~~~~~~i 139 (224)
T d1hg3a_ 81 EAVKEAGAVGTLLNHS----E-NRMI--------LADLEAAIRRAEEV-GLMTMVCSN--N-----PAVSAAVAALNPDY 139 (224)
T ss_dssp HHHHHTTCCEEEESCG----G-GCCB--------HHHHHHHHHHHHHH-TCEEEEEES--S-----HHHHHHHHTTCCSE
T ss_pred hhccccCcceeeeccc----c-cccc--------ccchhHHHHHHHHc-CCceeechh--h-----HHHHHhhhhcccce
Confidence 3444 49999988532 1 1111 12223344444332 455555554 1 23445667788888
Q ss_pred EEEcccCCC--CCCCCCCcHH----HHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCCCchH
Q psy4398 200 IGVHGRTKA--ERPRHRNRIE----MIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVEKLPK 265 (306)
Q Consensus 200 i~v~~~~~~--~~~~~p~~~~----~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p~~~~ 265 (306)
|-+.+.-.- +....+...+ .++.+++.- ++||++.|||++.++...+.+. |+.+|+|++.-+.+.+
T Consensus 140 iAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d~~~ 215 (224)
T d1hg3a_ 140 VAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEK 215 (224)
T ss_dssp EEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHH
T ss_pred EEecchHhhccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcCHHH
Confidence 776443211 1111122222 334444433 7899999999999999998886 5699999986444443
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.00 E-value=0.14 Score=41.88 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh--hhhhccccC
Q psy4398 183 ADTIALCKRLEAC-GIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL--NCAFLRNHY 258 (306)
Q Consensus 183 ~~~~~~a~~l~~~-G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~--~v~vGrall 258 (306)
+.....+..+.-. +.-+++.... ... .+.+.+..+++.+ ++||+..+||+|.++++++.+. ++.+|+++.
T Consensus 146 ~~i~~~a~~~~y~vs~~gvtg~~~---~~~---~~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~~ADgvIVGSaiv 219 (231)
T d2f6ua1 146 ELAASYALVGEKLFNLPIIYIEYS---GTY---GNPELVAEVKKVLDKARLFYGGGIDSREKAREMLRYADTIIVGNVIY 219 (231)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECT---TSC---CCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHHHSSEEEECHHHH
T ss_pred HHHHHHHHhhhhhcceEEEEEecc---ccc---chhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHhcCCEEEEChHHh
Confidence 3344545555433 4455554321 111 2446666666665 6999999999999999998764 779999975
|
| >d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: KguE-like domain: Hypothetical protein PA2260 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.74 E-value=2.7 Score=33.76 Aligned_cols=114 Identities=7% Similarity=0.069 Sum_probs=62.3
Q ss_pred ceEEEecCCCHHHH-----HHHHHHHh-cCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEE-
Q psy4398 103 KIILQIGTADPERA-----LEAAKKVE-HDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCK- 175 (306)
Q Consensus 103 p~ivql~g~~~~~~-----~~aa~~~~-~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vK- 175 (306)
|+.||+.+.+.+.. .+..+.++ .|||+|||... +...+..+.++-+.+++ .++.+..-
T Consensus 3 p~~i~l~~fg~~~v~~~~~~~~l~~~a~~G~dgIEi~~~--------------~~~~~~~~~~l~~~~~~-~GL~i~~~~ 67 (250)
T d1yx1a1 3 PVSISLSSYGADLVRSRGQASFLPLLAMAGAQRVELREE--------------LFAGPPDTEALTAAIQL-QGLECVFSS 67 (250)
T ss_dssp CEEEEGGGGCHHHHHHHCGGGGHHHHHHHTCSEEEEEGG--------------GCSSCCCHHHHHHHHHH-TTCEEEEEE
T ss_pred CEEEEhhhcccccccccCHHHHHHHHHHhCCCEEEEecc--------------cCCCcchHHHHHHHHHH-cCCEEEEec
Confidence 89999988765443 23345454 49999999411 01112223344333332 35544321
Q ss_pred -----eccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEec
Q psy4398 176 -----IRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANG 235 (306)
Q Consensus 176 -----ir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~G 235 (306)
...+...++..+.++.+.+.|+..|.++.... ....+++.+....+..++.+..-.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~A~~LG~~~v~~~~g~~----~~~~~l~~l~~~a~~~Gv~l~iE~ 128 (250)
T d1yx1a1 68 PLELWREDGQLNPELEPTLRRAEACGAGWLKVSLGLL----PEQPDLAALGRRLARHGLQLLVEN 128 (250)
T ss_dssp EEEEECTTSSBCTTHHHHHHHHHHTTCSEEEEEEECC----CSSCCHHHHHHHHTTSSCEEEEEC
T ss_pred ccccccCchhhHHHHHHHHHHHHHhCCCEEEEeeccc----chhHHHHHHHHHHHHcCCEEEEEe
Confidence 11122234577778888889999999865321 112345556666666666555543
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=88.68 E-value=4.1 Score=33.17 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=79.3
Q ss_pred CCceEEEec------CCCHHHHHHHHH---HHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccc
Q psy4398 101 KNKIILQIG------TADPERALEAAK---KVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSI 170 (306)
Q Consensus 101 ~~p~ivql~------g~~~~~~~~aa~---~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~ 170 (306)
+.|+.+=|- .++.+++....+ .+++ |+|+|-+-+-.+..+ =|.+.+.++++..+ +.
T Consensus 50 ~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G~dGvV~G~L~~dg~-----------iD~~~~~~L~~~a~---~l 115 (247)
T d1twda_ 50 TIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGN-----------VDMPRMEKIMAAAG---PL 115 (247)
T ss_dssp CSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSS-----------BCHHHHHHHHHHHT---TS
T ss_pred CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCCCC-----------ccHHHHHHHHHHhc---cc
Confidence 345555542 356666655544 4444 999999855544421 26677777777654 34
Q ss_pred cEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh
Q psy4398 171 PVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL 249 (306)
Q Consensus 171 pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~ 249 (306)
|++.=-.. ....+..+-.+.|.+.|++.|.-+|.... -...++.++++.+.. +.-|++.|||+ .+++.++++.
T Consensus 116 ~vTFHRAf-D~~~d~~~al~~Li~lG~~rILTSGg~~~----a~~G~~~L~~L~~~a~~~iIm~GgGI~-~~Ni~~l~~~ 189 (247)
T d1twda_ 116 AVTFHRAF-DMCANPLYTLNNLAELGIARVLTSGQKSD----ALQGLSKIMELIAHRDAPIIMAGAGVR-AENLHHFLDA 189 (247)
T ss_dssp EEEECGGG-GGCSCHHHHHHHHHHHTCCEEEECTTSSS----TTTTHHHHHHHHTSSSCCEEEEESSCC-TTTHHHHHHH
T ss_pred Ceeeehhh-hhhCCHHHHHHHHHhcCCCeEeccCCCCc----hhHHHHHHHHHHHhcCCcEEEecCCCC-HHHHHHHHHc
Confidence 44433221 11234566667888889999987765321 234678888887655 44477888987 4566777665
Q ss_pred hh
Q psy4398 250 NC 251 (306)
Q Consensus 250 ~v 251 (306)
++
T Consensus 190 g~ 191 (247)
T d1twda_ 190 GV 191 (247)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=88.63 E-value=2.2 Score=34.17 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=70.0
Q ss_pred HHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcE
Q psy4398 121 KKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIA 199 (306)
Q Consensus 121 ~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~ 199 (306)
+.+++ |++++-++.+= ++.. .+.+.+.+++.++. ++.+.+-+. . .+ -++...+.+.+.
T Consensus 79 ~~l~~~g~~~viigHsE-----rR~~--------~~e~~~~~~~~~~~-gl~~ivcvg--e-~~----~~~~~~~~~~~i 137 (226)
T d1w0ma_ 79 ENIKEAGGSGVILNHSE-----APLK--------LNDLARLVAKAKSL-GLDVVVCAP--D-PR----TSLAAAALGPHA 137 (226)
T ss_dssp HHHHHHTCCEEEECCTT-----SCCB--------HHHHHHHHHHHHHT-TCEEEEEES--S-HH----HHHHHHHTCCSE
T ss_pred hhhcccccceEEeechh-----hhhh--------ccchHHHHHHHHHc-CCEEEEecC--c-hH----Hhhhhhccccce
Confidence 44554 99999886441 1111 12344555555443 555555444 2 22 234456688888
Q ss_pred EEEcccCCCCCCC--CCCcHH----HHHHHHhhC-CCcEEEecCCCCHHHHHHHHHh---hhhhccccCCCC
Q psy4398 200 IGVHGRTKAERPR--HRNRIE----MIRTLTQHL-KIPVIANGGSKEIVDYGGVFSL---NCAFLRNHYPVE 261 (306)
Q Consensus 200 i~v~~~~~~~~~~--~p~~~~----~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~---~v~vGrall~~p 261 (306)
|.+-+.-.-+.-. .+.+.+ .++.+++.. ++||+..|||++.++...+.+. |+.+|+|++.-+
T Consensus 138 Iayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~ 209 (226)
T d1w0ma_ 138 VAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAK 209 (226)
T ss_dssp EEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCS
T ss_pred eeecchhhccCCCCCChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechheecCC
Confidence 8875543221111 111222 334445544 7999999999999999888876 569999998644
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.97 E-value=3.8 Score=34.17 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCC--C----CC---CCCC-cHHHHHH
Q psy4398 154 PDIACNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKA--E----RP---RHRN-RIEMIRT 222 (306)
Q Consensus 154 ~~~~~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~--~----~~---~~p~-~~~~v~~ 222 (306)
++...+-++.+++.+ ..++.+....+.+.++..+.++.+++.|+|+|.++-.-+. . .+ ..|. -.+.++.
T Consensus 86 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~ 165 (312)
T d1gtea2 86 AAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRW 165 (312)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHH
Confidence 455556666666555 4566667766678889999999999999999997532111 0 11 0111 1245677
Q ss_pred HHhhCCCcEEE--ecCCCCHHHHHHHH
Q psy4398 223 LTQHLKIPVIA--NGGSKEIVDYGGVF 247 (306)
Q Consensus 223 i~~~~~ipvia--~GGI~s~~~~~~~l 247 (306)
+++.+++||+. ..++.+..+..+++
T Consensus 166 v~~~~~~pv~vKl~~~~~~~~~i~~~~ 192 (312)
T d1gtea2 166 VRQAVQIPFFAKLTPNVTDIVSIARAA 192 (312)
T ss_dssp HHHHCSSCEEEEECSCSSCHHHHHHHH
T ss_pred HhhccCCceeecccccchhHHHHHHHH
Confidence 88888999886 34556666654444
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=87.91 E-value=0.29 Score=40.29 Aligned_cols=54 Identities=22% Similarity=0.109 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecC
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGG 236 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GG 236 (306)
|.+..+.+++|+.++++|||+|++|.|. +.+... .+-+..+++.+++|+=.-|.
T Consensus 20 g~~~Pd~~~~a~~~~~~GadgITvH~R~-DrRHI~---~~Dv~~l~~~~~~~lNlE~a 73 (242)
T d1m5wa_ 20 GTAYPDPVQAAFIAEQAGADGITVHLRE-DRRHIT---DRDVRILRQTLDTRMNLEMA 73 (242)
T ss_dssp SCCCSCHHHHHHHHHTTTCSEEEEECCT-TCSSSC---HHHHHHHHHHCSSEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHcCCCeEEeCCCC-Cccccc---hHHHHHHHHHhhcccccccc
Confidence 3455679999999999999999999984 333322 24455566655555544444
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=87.78 E-value=1.7 Score=36.04 Aligned_cols=81 Identities=10% Similarity=0.115 Sum_probs=48.8
Q ss_pred CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~ 190 (306)
++++..+-++ .+++|+|.|||-.-+-.+.... -+..+..+.+..+++.+++ .+++++|-.+ -.+.++
T Consensus 24 ~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~----is~~eE~~Rl~pvi~~l~~-~~~~iSIDT~-------~~eVa~ 91 (264)
T d1ad1a_ 24 NVESAVTRVKAMMDEGADIIDVGGVSTRPGHEM----ITVEEELNRVLPVVEAIVG-FDVKISVDTF-------RSEVAE 91 (264)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCC----CCHHHHHHHHHHHHHHHTT-SSSEEEEECS-------CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCCCCCc----CCHHHHHHhhhhHhhhhcc-cCcccchhhh-------hHHHHH
Confidence 5566555555 4467999999976553332111 0122334456667777654 3667776655 246677
Q ss_pred HHHHcCCcEEE-Ecc
Q psy4398 191 RLEACGIIAIG-VHG 204 (306)
Q Consensus 191 ~l~~~G~d~i~-v~~ 204 (306)
.+.++|++.|. |++
T Consensus 92 ~al~~Ga~iINDVs~ 106 (264)
T d1ad1a_ 92 ACLKLGVDIINDQWA 106 (264)
T ss_dssp HHHHTTCCEEEETTT
T ss_pred HHHhcCCcEeecccc
Confidence 77778888887 544
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=87.60 E-value=1.1 Score=37.44 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhcccccEEEEeccCC-ChHHHHHHHHHHHHcCCcEEEEcccC
Q psy4398 154 PDIACNILTTLISNLSIPVSCKIRVFH-NEADTIALCKRLEACGIIAIGVHGRT 206 (306)
Q Consensus 154 ~~~~~eiv~~v~~~~~~pv~vKir~g~-~~~~~~~~a~~l~~~G~d~i~v~~~~ 206 (306)
.+.+.+.++.+...+++||++-+-.|. +..+..+.++.++++|+.+|++-+..
T Consensus 61 ~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~ 114 (275)
T d1s2wa_ 61 WTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKL 114 (275)
T ss_dssp CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBC
T ss_pred hhhHHHHHHhhhcccCCceeEecccccccchHHHHHHHHHHHhccceeEeeccc
Confidence 455677778888889999999999875 56778899999999999999997643
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=87.52 E-value=0.94 Score=37.69 Aligned_cols=122 Identities=7% Similarity=-0.039 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcccccEEEEeccC-CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-----------------CcHH
Q psy4398 157 ACNILTTLISNLSIPVSCKIRVF-HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-----------------NRIE 218 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~g-~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-----------------~~~~ 218 (306)
+.++.+..++.=...+..-+..| |+.+++.++++.+.++|||.|-+-=...+....|| .-++
T Consensus 4 i~~~f~~lk~~~~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~ 83 (267)
T d1qopa_ 4 YENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFE 83 (267)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhh
Confidence 45667777665455566666665 78899999999999999999998533322222222 1357
Q ss_pred HHHHHHhhC-CCcEEEecCCCCHHHH--HHHHHhhhhhcc-c-cCCC-CCchHHHHHHHHHhcCCC
Q psy4398 219 MIRTLTQHL-KIPVIANGGSKEIVDY--GGVFSLNCAFLR-N-HYPV-EKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 219 ~v~~i~~~~-~ipvia~GGI~s~~~~--~~~l~~~v~vGr-a-ll~~-p~~~~~~l~~~~~~~g~~ 278 (306)
+++++++.. ++|++..|=.+.+... ++.++.....|= + ++-| |.-...++.+.++++|++
T Consensus 84 ~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~ 149 (267)
T d1qopa_ 84 MLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIA 149 (267)
T ss_dssp HHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCE
T ss_pred hhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCce
Confidence 778888875 7999999964433332 222222112221 1 2222 222223788889999987
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.45 E-value=0.36 Score=35.75 Aligned_cols=44 Identities=39% Similarity=0.672 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHhcCCCCCcceehh--hccceeeEEEEcCccccCC
Q psy4398 262 KLPKTILYAHCKYKRFEVPKYETVQ--YEKLFRSLVTVNGKQYTSK 305 (306)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 305 (306)
..++-.|.+|+.+++++.+.|.... -++.|.+.|.++|++|++.
T Consensus 26 ~~pKs~LqE~~Qk~~~~~P~Y~~~~~~~~~~F~~~V~v~g~~~~s~ 71 (128)
T d1whna_ 26 ITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQST 71 (128)
T ss_dssp CCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTEEEEES
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEeecccCCCCEEEEEECCeEeecc
Confidence 5677799999999999999987655 5789999999999999753
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=86.66 E-value=1.5 Score=36.18 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcccccEEEEeccC-CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-----------------CcHH
Q psy4398 157 ACNILTTLISNLSIPVSCKIRVF-HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-----------------NRIE 218 (306)
Q Consensus 157 ~~eiv~~v~~~~~~pv~vKir~g-~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-----------------~~~~ 218 (306)
+.+.++..++.=...+..-+..| |+.+.+.++++.+.++|+|.|-+.=...+....|| .-++
T Consensus 4 i~~~f~~~~~~~~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~ 83 (261)
T d1rd5a_ 4 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLE 83 (261)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhh
Confidence 34556666655344566666665 78899999999999999999998432222222121 1367
Q ss_pred HHHHHHhhCCCcEEEecCCCCHHHH--HHHHHhhhhhccccCCC-CCchHHHHHHHHHhcCCC
Q psy4398 219 MIRTLTQHLKIPVIANGGSKEIVDY--GGVFSLNCAFLRNHYPV-EKLPKTILYAHCKYKRFE 278 (306)
Q Consensus 219 ~v~~i~~~~~ipvia~GGI~s~~~~--~~~l~~~v~vGrall~~-p~~~~~~l~~~~~~~g~~ 278 (306)
+++++++..++|++..+-.+.+... ++..+.| +.--++-| |.-...++.+.++++|+.
T Consensus 84 ~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~~~~G--vdG~IipDlp~eE~~~~~~~~~~~gl~ 144 (261)
T d1rd5a_ 84 MLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAG--VHGLIVPDLPYVAAHSLWSEAKNNNLE 144 (261)
T ss_dssp HHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTT--CCEEECTTCBTTTHHHHHHHHHHTTCE
T ss_pred hhhcccccccCceeeeeeecchhhHHHHHHHhcC--ceeeeecCccHHHHHHHHHHHhccccc
Confidence 7888888889999999885443221 1222222 22223333 232334778889999987
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=86.45 E-value=3.1 Score=31.82 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=49.5
Q ss_pred HHHHHHHHhcc-cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC--CCcEEEe
Q psy4398 158 CNILTTLISNL-SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL--KIPVIAN 234 (306)
Q Consensus 158 ~eiv~~v~~~~-~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~--~ipvia~ 234 (306)
.+.++.+++.. ..++-|-+. + .+-++.+.++|+|.|.+...+ .+.+++..+.+ ++.+-++
T Consensus 67 ~~~~~~~~~~~~~~~IeVEv~---~----~~~~~~a~~~g~diImLDN~~----------pe~~~~av~~i~~~~~lEaS 129 (167)
T d1qapa1 67 RQAVEKAFWLHPDVPVEVEVE---N----LDELDDALKAGADIIMLDNFN----------TDQMREAVKRVNGQARLEVS 129 (167)
T ss_dssp HHHHHHHHHHSTTSCEEEEES---S----HHHHHHHHHTTCSEEEESSCC----------HHHHHHHHHTTCTTCCEEEC
T ss_pred hhhhHHHhhcCCCceEEEecC---c----HHHHHHHHhcCCcEEEecCCC----------HHHHHHHHHhcCCceEEEEe
Confidence 34555554332 456666666 2 233445567999999987543 24455555555 5788899
Q ss_pred cCCCCHHHHHHHHHhhh
Q psy4398 235 GGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 235 GGI~s~~~~~~~l~~~v 251 (306)
|||+ .+++.+..+.|+
T Consensus 130 GgI~-~~ni~~ya~~GV 145 (167)
T d1qapa1 130 GNVT-AETLREFAETGV 145 (167)
T ss_dssp CCSC-HHHHHHHHHTTC
T ss_pred CCCC-HHHHHHHHHcCC
Confidence 9986 888888888776
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=86.33 E-value=3.2 Score=33.16 Aligned_cols=86 Identities=9% Similarity=0.159 Sum_probs=57.8
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEE--EEecc
Q psy4398 101 KNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVS--CKIRV 178 (306)
Q Consensus 101 ~~p~ivql~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~--vKir~ 178 (306)
+.|+++-|=-.+.+++.+.++.+....++++++.. . . .+.-.++++.+++ .+.+++ .|+-
T Consensus 3 ~~~iivALD~~~~~eal~i~~~l~~~i~~iKiG~~--l------------~--~~~G~~~i~~l~~-~~~~if~D~K~~- 64 (231)
T d1eixa_ 3 NSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKE--M------------F--TLFGPQFVRELQQ-RGFDIFLDLKFH- 64 (231)
T ss_dssp CCCEEEEECCSSHHHHHHHHTTSCTTTCEEEEEHH--H------------H--HHHHHHHHHHHHH-TTCCEEEEEEEC-
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhCCcceEEEECHH--H------------H--hhcCHHHHHHHHh-cCchhhHhhHhh-
Confidence 45888888777888877777766667899999622 1 1 1122345666665 455644 5555
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEccc
Q psy4398 179 FHNEADTIALCKRLEACGIIAIGVHGR 205 (306)
Q Consensus 179 g~~~~~~~~~a~~l~~~G~d~i~v~~~ 205 (306)
.-.......++.+.+.|++.+++|+-
T Consensus 65 -DI~nt~~~~~~~~~~~~~~~~tvh~~ 90 (231)
T d1eixa_ 65 -DIPNTAAHAVAAAADLGVWMVNVHAS 90 (231)
T ss_dssp -SCHHHHHHHHHHHHHHTCSEEEEBGG
T ss_pred -cCcHHHHHHHHhhhcccceEEEEecc
Confidence 33445666778888899999999863
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=85.85 E-value=7.2 Score=31.91 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=79.3
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc-EEEEeccC--
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP-VSCKIRVF-- 179 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir~g-- 179 (306)
-+++|-..|. ..|+.+++ |+|.|=+-=+- .+ .-.++-..+.-..+....-.++|++....+ +.+-+..+
T Consensus 16 ki~~lTayD~----~~A~~~~~agvDiiLVGDSl--gm-v~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy 88 (262)
T d1m3ua_ 16 RFATITAYDY----SFAKLFADEGLNVMLVGDSL--GM-TVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAY 88 (262)
T ss_dssp CEEEEECCSH----HHHHHHHHHTCCEEEECTTH--HH-HTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSS
T ss_pred cEEEEEcCCH----HHHHHHHHCCCCEEEEcCcH--Hh-cccCCCCcceechHhHHHHHHHHHhccccceeEeccccccc
Confidence 3456666663 34455654 99998763111 11 112232333345667777778887766444 44555542
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC---------------CHHHHH
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK---------------EIVDYG 244 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~---------------s~~~~~ 244 (306)
.+.++...-+..+-+.|||+|-+.+. ....+.++.+.+. +|||++.=|+. +.++++
T Consensus 89 ~~~~~a~~~a~~l~~~GAdaVKlEgg--------~~~~~~I~~L~~~-gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~ea~ 159 (262)
T d1m3ua_ 89 ATPEQAFENAATVMRAGANMVKIEGG--------EWLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGD 159 (262)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEECCCS--------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCCCCSHHHHH
T ss_pred hhhHHHHHHHHHHHhcCCcEEEeccc--------hhHHHHHHHHHHc-CCeEEeehhhchhhhhhcCCccccCccHHHHH
Confidence 34566788888888999999987643 2245788888866 79999864433 566666
Q ss_pred HHHH
Q psy4398 245 GVFS 248 (306)
Q Consensus 245 ~~l~ 248 (306)
++++
T Consensus 160 ~l~~ 163 (262)
T d1m3ua_ 160 QLLS 163 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=85.56 E-value=4.7 Score=32.91 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=69.5
Q ss_pred CCceEEEec---CCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccc--ccEEE
Q psy4398 101 KNKIILQIG---TADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLS--IPVSC 174 (306)
Q Consensus 101 ~~p~ivql~---g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~v 174 (306)
+..+++++. ..+++.+.+.++.+.+ |+|.|.|- |-+|.. .|+.+.++++.+++.+. .++.+
T Consensus 132 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l~----------DT~G~~---~P~~v~~~v~~l~~~~~~~~~i~~ 198 (289)
T d1nvma2 132 GMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMA----------DSGGAM---SMNDIRDRMRAFKAVLKPETQVGM 198 (289)
T ss_dssp TCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEE----------CTTCCC---CHHHHHHHHHHHHHHSCTTSEEEE
T ss_pred CCceeeEeeeccccCchhhhHHHHhhccccceeeeec----------chhhcc---cchhHHHHHHHHHHHhccccccee
Confidence 444555543 3567888899998876 99998873 455653 69999999999998874 34444
Q ss_pred EeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCC
Q psy4398 175 KIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLK 228 (306)
Q Consensus 175 Kir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ 228 (306)
=.. .+..-...-+-.+.++|++.|..+-....++ .|...++.+-...+..+
T Consensus 199 H~H--n~~g~a~an~l~A~~~G~~~id~si~GlG~~-~GN~~tE~lv~~l~~~g 249 (289)
T d1nvma2 199 HAH--HNLSLGVANSIVAVEEGCDRVDASLAGMGAG-AGNAPLEVFIAVAERLG 249 (289)
T ss_dssp ECB--CTTSCHHHHHHHHHHTTCCEEEEBGGGCSST-TCBCBHHHHHHHHHHHT
T ss_pred eec--hHHHHHHHHHHHHHHhCCcEeeccccccCCC-CCCccHHHHHHHHHhcC
Confidence 444 3333344444456689999998653222222 34456665444433433
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Probab=85.54 E-value=1.4 Score=35.28 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=66.8
Q ss_pred cCCCHHHHHHHHHHHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc----CCChHH
Q psy4398 109 GTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV----FHNEAD 184 (306)
Q Consensus 109 ~g~~~~~~~~aa~~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~----g~~~~~ 184 (306)
+..+|++..+-++.+ .||..+-+-+|- .+++.=.+.++++++.++ .+++++ +|+.++
T Consensus 11 ~~gdpde~~~~~~~~-~G~~~~KiKvG~---------------~~~~~D~~~i~~vr~~~p---d~~L~vDaN~~w~~~~ 71 (221)
T d1r6wa1 11 CNGDPDDLILKLADM-PGEKVAKVRVGL---------------YEAVRDGMVVNLLLEAIP---DLHLRLDANRAWTPLK 71 (221)
T ss_dssp ECSCHHHHHHHHHTC-CSSEEEEEECSS---------------SCHHHHHHHHHHHHHHCT---TEEEEEECTTCBCHHH
T ss_pred CCCCHHHHHHHHHHc-CCCCeEEEeeCC---------------CCHHHHHHHHHHHHHHCC---CCeEEEeCCCCCCHHH
Confidence 456888776655543 499988886552 123333567888888763 234444 688899
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCC
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKE 239 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s 239 (306)
+.++++.+++.....|..- +++. .+.+..+++++.+++||.+.=.+.+
T Consensus 72 A~~~~~~l~~~~~~~ie~~----E~P~---~~~~~~~~l~~~~~ipIa~dEs~~~ 119 (221)
T d1r6wa1 72 GQQFAKYVNPDYRDRIAFL----EEPC---KTRDDSRAFARETGIAIAWDESLRE 119 (221)
T ss_dssp HHHHHHTSCTTTGGGEEEE----ECCB---SSHHHHHHHHHHHCCCEEESGGGGS
T ss_pred HHHHHHHHHHhhcCCeeee----cchh---hhhhHHHHHhhcccchhhhccccch
Confidence 9999999988655544321 1111 2456678888888888876544333
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=85.31 E-value=8.4 Score=31.44 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=74.3
Q ss_pred eEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhccccc-EEEEeccC--
Q psy4398 104 IILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIP-VSCKIRVF-- 179 (306)
Q Consensus 104 ~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir~g-- 179 (306)
=+++|...|. ..|+.+++ |.|.|-+-=+-.. .-.++-+...-..+....-.++|++....+ +.+-+..+
T Consensus 16 ki~~lTayd~----~~A~~ae~agiDiilVGDSlgm---~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy 88 (260)
T d1o66a_ 16 KIAMLTAYES----SFAALMDDAGVEMLLVGDSLGM---AVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAY 88 (260)
T ss_dssp CEEEEECCSH----HHHHHHHHTTCCEEEECTTHHH---HTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSS
T ss_pred cEEEEeCCCH----HHHHHHHHcCCCEEEEcCCchh---eecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhh
Confidence 4566767773 33455554 8999877311111 112333334445666677778887766444 45555542
Q ss_pred -CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCC
Q psy4398 180 -HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSK 238 (306)
Q Consensus 180 -~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~ 238 (306)
...++..+-++.+.+.|+|++-+.+. ....+.++.+.+. +|||++.=|..
T Consensus 89 ~~~~~~~~~a~~~~~~~gadavk~eg~--------~~~~~~i~~l~~~-gIPV~gHiGl~ 139 (260)
T d1o66a_ 89 QQSKEQAFAAAAELMAAGAHMVKLEGG--------VWMAETTEFLQMR-GIPVCAHIGLT 139 (260)
T ss_dssp SSCHHHHHHHHHHHHHTTCSEEEEECS--------GGGHHHHHHHHHT-TCCEEEEEESC
T ss_pred cchhHHHHHHHHHHHHhhhhhccccch--------hhhhHHHHHHHHc-CCeeEeecccc
Confidence 34466777788888899999998753 2356788888875 79999876543
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=84.59 E-value=2 Score=35.26 Aligned_cols=96 Identities=8% Similarity=0.080 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhhh---hhccccCCC
Q psy4398 184 DTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNC---AFLRNHYPV 260 (306)
Q Consensus 184 ~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~~ipvia~GGI~s~~~~~~~l~~~v---~vGrall~~ 260 (306)
+..++|+.+++.||++|.|-.- ...+. .+++.+..+++.+++||..--=|.|..+..+...+|+ .+--+++.+
T Consensus 66 dp~~~A~~y~~~GA~aiSVLTe--~~~F~--Gs~~dl~~v~~~~~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall~~ 141 (254)
T d1vc4a_ 66 DPVEAALAYARGGARAVSVLTE--PHRFG--GSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGE 141 (254)
T ss_dssp CHHHHHHHHHHTTCSEEEEECC--CSSSC--CCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHGG
T ss_pred CHHHHHHHHHhcCCceEEEEcC--ccccc--ccHHHHHHHHHHcCCCcccCCccccHHHHHHHHhccchHHHHHHHHHHH
Confidence 5778999999999999987431 11233 3788999999999999999999999999999888765 111133321
Q ss_pred CCchHHHHHHHHHhcCCC-CCcceehh
Q psy4398 261 EKLPKTILYAHCKYKRFE-VPKYETVQ 286 (306)
Q Consensus 261 p~~~~~~l~~~~~~~g~~-~~~~~~~~ 286 (306)
...++-+.....|++ +.+.|+..
T Consensus 142 ---~l~~l~~~A~~lgl~~LVEvh~~~ 165 (254)
T d1vc4a_ 142 ---LTGAYLEEARRLGLEALVEVHTER 165 (254)
T ss_dssp ---GHHHHHHHHHHHTCEEEEEECSHH
T ss_pred ---HHHHHHHHHHHhCCceEEEeccHH
Confidence 112455566667766 44444443
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=84.58 E-value=1.6 Score=36.28 Aligned_cols=119 Identities=8% Similarity=-0.051 Sum_probs=71.5
Q ss_pred HHHHHHhcccccEEEEeccC-CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-----------------CcHHHHH
Q psy4398 160 ILTTLISNLSIPVSCKIRVF-HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-----------------NRIEMIR 221 (306)
Q Consensus 160 iv~~v~~~~~~pv~vKir~g-~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-----------------~~~~~v~ 221 (306)
..+.+++.=...+..-+..| |+.+.+.++++.+.+ |+|.|-+-=...+....|| .-+++++
T Consensus 6 ~F~~~k~~~~~ali~yitaG~P~~~~~~~~l~~l~~-gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~ 84 (271)
T d1ujpa_ 6 AFAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVR 84 (271)
T ss_dssp HHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHGG-GCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHc-CCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHH
Confidence 34555554333455666665 688889999999875 9999987432222222111 1367888
Q ss_pred HHHhhCCCcEEEecCCCCHHHH--HHHHHhhhhhcc--ccCCC-CCchHHHHHHHHHhcCCCC
Q psy4398 222 TLTQHLKIPVIANGGSKEIVDY--GGVFSLNCAFLR--NHYPV-EKLPKTILYAHCKYKRFEV 279 (306)
Q Consensus 222 ~i~~~~~ipvia~GGI~s~~~~--~~~l~~~v~vGr--all~~-p~~~~~~l~~~~~~~g~~~ 279 (306)
++++..++|++..|=.+.+..+ ++.++.....|= -++-| |.-...++.+.++++|+++
T Consensus 85 ~~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~ 147 (271)
T d1ujpa_ 85 EVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLET 147 (271)
T ss_dssp HHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEE
T ss_pred HHhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccce
Confidence 9998889999999985543332 333333222222 22333 3222247888899999883
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.18 E-value=1.7 Score=37.81 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhhh
Q psy4398 185 TIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGGSKEIVDYGGVFSLNC 251 (306)
Q Consensus 185 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GGI~s~~~~~~~l~~~v 251 (306)
..+.++.+.++|+|.|.|+-- ..+.. ...+.++.+++.. ++||| .|+|.|.+.+.++++.|+
T Consensus 108 ~~er~~~l~~agvd~ivID~A---~G~s~-~~~~~i~~ik~~~~~~~iI-aGNV~T~e~a~~L~~aGa 170 (365)
T d1zfja1 108 TFERAEALFEAGADAIVIDTA---HGHSA-GVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGV 170 (365)
T ss_dssp HHHHHHHHHHHTCSEEEECCS---CTTCH-HHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCEEEEECC---ccccc-chhHHHHHHHhhCCCccee-ecccccHHHHHHHHhcCC
Confidence 457778888999999988522 12211 2356778888887 67777 689999999999999864
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=83.81 E-value=4.2 Score=33.45 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=51.1
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
...|+++++...+.++..+.++.+++ |+|+|-+- .|. |. .-..+.+.+..+++.++++.|+.+--..
T Consensus 69 ~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~--pP~-------y~---~~s~~~i~~~~~~ia~a~~~pi~iYn~P 136 (295)
T d1o5ka_ 69 GKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVV--TPY-------YN---KPTQEGLYQHYKYISERTDLGIVVYNVP 136 (295)
T ss_dssp TSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE--CCC-------SS---CCCHHHHHHHHHHHHTTCSSCEEEEECH
T ss_pred cCCceEeecccccHHHHHHHHHHHHHcCCCEEEEe--CCC-------CC---CCCHHHHHHHHHHHHhccCCCeeEEecc
Confidence 35799999999999999999998876 99999883 233 11 1235667788888888889998887653
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=83.29 E-value=1.4 Score=36.90 Aligned_cols=79 Identities=9% Similarity=0.095 Sum_probs=47.0
Q ss_pred CHHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~ 190 (306)
+++...+.++ .+++|+|.|||-.-+..+.... -+..+..+.+.-+++++++..+.+++|-.+- .++|+
T Consensus 36 ~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~----vs~eeE~~Rl~pvi~~l~~~~~~~iSIDT~~-------~eVa~ 104 (282)
T d1ajza_ 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAE----VSVEEELQRVIPVVEAIAQRFEVWISVDTSK-------PEVIR 104 (282)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCC----CCHHHHHHHHHHHHHHHHHHCCCEEEEECCC-------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccccccccC----CcHHHHHHHHHHHHHHHhhcccceEEEEecC-------hHHHH
Confidence 3455555554 4457999999965553331111 1222344567788888887777777777662 34555
Q ss_pred HHHHcCCcEEE
Q psy4398 191 RLEACGIIAIG 201 (306)
Q Consensus 191 ~l~~~G~d~i~ 201 (306)
.+.++|++.|.
T Consensus 105 ~al~~Ga~iIN 115 (282)
T d1ajza_ 105 ESAKVGAHIIN 115 (282)
T ss_dssp HHHHTTCCEEC
T ss_pred HHHhcCceEEe
Confidence 55666666664
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=83.28 E-value=2.2 Score=35.21 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=60.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----hh-
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----NC- 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~v- 251 (306)
.|.+...+.++.+.+.|+++|.+.|.+.+...... ...++++.+.+.+ ++|||+.-|-.|.+++.+..+. |+
T Consensus 21 iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad 100 (292)
T d1xkya1 21 IDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD 100 (292)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCC
Confidence 57788999999999999999999877655433221 1345566666665 6899887776666665444432 33
Q ss_pred --hhccccCCCCCchHH--HHHHHHHhcCCC
Q psy4398 252 --AFLRNHYPVEKLPKT--ILYAHCKYKRFE 278 (306)
Q Consensus 252 --~vGrall~~p~~~~~--~l~~~~~~~g~~ 278 (306)
++..+.|..|....+ ..++..+..+++
T Consensus 101 ~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~p 131 (292)
T d1xkya1 101 AVMLVAPYYNKPSQEGMYQHFKAIAESTPLP 131 (292)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHHHHHTCSSC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHhccCCCc
Confidence 555555544422222 333334454544
|
| >d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Galdieria partita [TaxId: 83374]
Probab=82.83 E-value=5 Score=34.04 Aligned_cols=96 Identities=5% Similarity=-0.096 Sum_probs=68.7
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.++|++..+. |-+++++++.+..+.. |.|.|-= ++..|. -.-+.+|.+.+.+.+++..+.++...
T Consensus 16 ~~RPL~~tiiKP~~Glsp~~~a~~~~e~a~GGvD~IKDDE~l~~q~--------~~p~~eRv~~~~~av~~a~~eTG~~~ 87 (328)
T d1bwva1 16 FGRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVKDDENINSQP--------FMRWRERYLFTMEAVNKASAATGEVK 87 (328)
T ss_dssp CSSCEEECBCSSSSCCCHHHHHHHHHHHHHHTCSEEECCTTCSSBT--------TBCHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCeEEeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCC--------ccchHHHHHHHHHHHHHHHHHhCCee
Confidence 4678888874 7789999999987765 8898754 333322 12345667777788888777777655
Q ss_pred EEEecc-CCChHHHHHHHHHHHHcCCcEEEEc
Q psy4398 173 SCKIRV-FHNEADTIALCKRLEACGIIAIGVH 203 (306)
Q Consensus 173 ~vKir~-g~~~~~~~~~a~~l~~~G~d~i~v~ 203 (306)
..-..+ +.+.++..+-++.+++.|...+.+.
T Consensus 88 ~ya~NiT~~~~~~m~~ra~~~~~~g~~~lm~~ 119 (328)
T d1bwva1 88 GHYLNVTAATMEEMYARANFAKELGSVIIMID 119 (328)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEeccCCCHHHHHHHHHHHHhcCCeEEEEc
Confidence 544444 3566788899999999999988864
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=82.71 E-value=6.6 Score=31.74 Aligned_cols=96 Identities=19% Similarity=0.153 Sum_probs=57.6
Q ss_pred CCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC---cH---
Q psy4398 144 GGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRN---RI--- 217 (306)
Q Consensus 144 ~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~---~~--- 217 (306)
...|-.+..+.+.+.++++.+++. ++.|++-+- ++. +-.+.+.+.|+|.|-+|-..-...+.... .+
T Consensus 102 TegGld~~~~~~~L~~~i~~l~~~-girvSLFiD--pd~----~~i~~a~~lGad~IElhTG~Ya~a~~~~~~~~el~~i 174 (242)
T d1m5wa_ 102 TEGGLDVAGQRDKMRDACKRLADA-GIQVSLFID--ADE----EQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARI 174 (242)
T ss_dssp CCSCCCSGGGHHHHHHHHHHHHHT-TCEEEEEEC--SCH----HHHHHHHHTTCSEEEEECHHHHHCCSHHHHHHHHHHH
T ss_pred cCCceeehhhHHHHHHHHHHHHhc-CCeEEEEec--cch----hhHHHHhhcCcceeeeecccccccccchhhHHHHHHH
Confidence 334556777889999999999775 777777776 553 33455678999999998543211111110 11
Q ss_pred HHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q psy4398 218 EMIRTLTQHLKIPVIANGGSKEIVDYGGVF 247 (306)
Q Consensus 218 ~~v~~i~~~~~ipvia~GGI~s~~~~~~~l 247 (306)
....+.+...++-|=|.=|++ .+....+.
T Consensus 175 ~~aa~~A~~lGL~VnAGHgLn-~~Nl~~i~ 203 (242)
T d1m5wa_ 175 AKAATFAASLGLKVNAGHGLT-YHNVKAIA 203 (242)
T ss_dssp HHHHHHHHHTTCEEEEESSCC-TTTHHHHH
T ss_pred HHHHHHHHhcCCcccCCCCcC-ccchHHHh
Confidence 222334444577777776754 44444443
|
| >d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=82.25 E-value=3.4 Score=35.09 Aligned_cols=95 Identities=4% Similarity=-0.143 Sum_probs=66.7
Q ss_pred CCCceEEEec----CCCHHHHHHHHHHHhc-CCCEEEE--ccCCCccccccCCccccccCChHHHHHHHHHHHhcccccE
Q psy4398 100 EKNKIILQIG----TADPERALEAAKKVEH-DVAAIDI--NMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPV 172 (306)
Q Consensus 100 ~~~p~ivql~----g~~~~~~~~aa~~~~~-g~d~vel--n~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv 172 (306)
.++|++..+. |-+++++++.+..+.. |.|.|-= ++..|.- .-+.+|.+.+.+.+++..+.++...
T Consensus 15 ~~RPLlgtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~~--------~p~~eRv~~~~~av~~a~~eTG~~k 86 (325)
T d1wdda1 15 YGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPF--------MRWRDRFVFCAEAIYKSQAETGEIK 86 (325)
T ss_dssp CSSCEEECBCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTT--------BCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCeEEeecCCCCCCCHHHHHHHHHHHHccCCceeeCCcccCCCCC--------cchHHHHHHHHHHHHHHHHhhCCce
Confidence 4678888874 7789999999887765 8898754 4444331 2345667777788887777776543
Q ss_pred EEEecc-CCChHHHHHHHHHHHHcCCcEEEE
Q psy4398 173 SCKIRV-FHNEADTIALCKRLEACGIIAIGV 202 (306)
Q Consensus 173 ~vKir~-g~~~~~~~~~a~~l~~~G~d~i~v 202 (306)
..-..+ +.+.++..+-++.+.++|++++.+
T Consensus 87 ~y~~nit~~~~~em~~ra~~a~e~G~~~~mi 117 (325)
T d1wdda1 87 GHYLNATAGTCEEMIKRAVFARELGVPIVMH 117 (325)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred eEEeccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 333332 245677888888889999999875
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.66 E-value=5.1 Score=32.93 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=47.7
Q ss_pred CHHHHHHHHHH-HhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHH
Q psy4398 112 DPERALEAAKK-VEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCK 190 (306)
Q Consensus 112 ~~~~~~~aa~~-~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~ 190 (306)
+.++..+.++. +++|+|.|||-.-+-.+.... -+-.+..+.+..+++.+++. +.+++|-.+ -.++++
T Consensus 23 ~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~----is~~eE~~Rl~p~i~~~~~~-~~~iSIDT~-------~~~Va~ 90 (270)
T d1eyea_ 23 DLDDAVKHGLAMAAAGAGIVDVGGESSRPGATR----VDPAVETSRVIPVVKELAAQ-GITVSIDTM-------RADVAR 90 (270)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECC------------------HHHHHHHHHHHHHT-TCCEEEECS-------CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCCCCEe----eechhhcccccceeeeeccc-ceeechHhh-------hHHHHH
Confidence 55665555554 457999999965543332111 12334456667777777654 566666554 257888
Q ss_pred HHHHcCCcEEE-Eccc
Q psy4398 191 RLEACGIIAIG-VHGR 205 (306)
Q Consensus 191 ~l~~~G~d~i~-v~~~ 205 (306)
.+.++|++.|. +++.
T Consensus 91 ~al~~Ga~iINDvsg~ 106 (270)
T d1eyea_ 91 AALQNGAQMVNDVSGG 106 (270)
T ss_dssp HHHHTTCCEEEETTTT
T ss_pred HHHhcCCeEEEecccc
Confidence 88899999998 6654
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.29 E-value=4.2 Score=33.59 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=53.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-CcHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh----hh-
Q psy4398 180 HNEADTIALCKRLEACGIIAIGVHGRTKAERPRHR-NRIEMIRTLTQHL--KIPVIANGGSKEIVDYGGVFSL----NC- 251 (306)
Q Consensus 180 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p-~~~~~v~~i~~~~--~ipvia~GGI~s~~~~~~~l~~----~v- 251 (306)
.|.+...+.++.+.+.|+++|.+.|.+.+...... ...++++.+.+.+ ++|+|+.-+-.|.+++.+..+. |+
T Consensus 25 iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad 104 (296)
T d1xxxa1 25 LDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAH 104 (296)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCC
Confidence 57788999999999999999999877655443221 1234556666665 5888877766776666555443 32
Q ss_pred --hhccccCCCC
Q psy4398 252 --AFLRNHYPVE 261 (306)
Q Consensus 252 --~vGrall~~p 261 (306)
++..+.+..|
T Consensus 105 ~v~i~~P~~~~~ 116 (296)
T d1xxxa1 105 GLLVVTPYYSKP 116 (296)
T ss_dssp EEEEECCCSSCC
T ss_pred eEEEEeccCCCC
Confidence 5555555443
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=81.14 E-value=13 Score=30.34 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=68.9
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEecc
Q psy4398 100 EKNKIILQIGTADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRV 178 (306)
Q Consensus 100 ~~~p~ivql~g~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~ 178 (306)
...|+++.+.+.+.++..+.++.+++ |+|+|-+ ..|.. + .-..+.+.+..+.+.+..+.|+.+--..
T Consensus 72 ~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~--~pP~~------~----~~s~~~~~~~~~~v~~~~~~pi~iYn~P 139 (293)
T d1f74a_ 72 DQIALIAQVGSVNLKEAVELGKYATELGYDCLSA--VTPFY------Y----KFSFPEIKHYYDTIIAETGSNMIVYSIP 139 (293)
T ss_dssp TSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEC--CCCCS------S----CCCHHHHHHHHHHHHHHHCCCEEEECCS
T ss_pred CccccccccccccHHHHHHHHHHHHHcCCCEeec--cCccc------c----ccchHHHHHHHhcccccCCceEEEEeec
Confidence 45799999999999999999998876 9999865 23331 1 1123445666677777778999887553
Q ss_pred CCC-hHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcHHHHHHHHhhC-CCcEEEecC
Q psy4398 179 FHN-EADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHL-KIPVIANGG 236 (306)
Q Consensus 179 g~~-~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~~~v~~i~~~~-~ipvia~GG 236 (306)
..+ ..-..++.+.+.+.. ..+-+-. . ..++..+.++++.. +.. +..|+
T Consensus 140 ~~tg~~l~~~~l~~L~~~~-~v~giK~-------~-~~~~~~~~~~~~~~~~~~-v~~g~ 189 (293)
T d1f74a_ 140 FLTGVNMGIEQFGELYKNP-KVLGVKF-------T-AGDFYLLERLKKAYPNHL-IWAGF 189 (293)
T ss_dssp SCSCHHHHHHHHHHHHTST-TEEEEEE-------C-CSCHHHHHHHHHHCTTSE-EEECC
T ss_pred cceeccccchhhhhhhhcc-ccccccc-------C-CCCHHHHHHHhhcCCCeE-EEeCc
Confidence 222 222345555555442 2222211 1 12556667777666 343 44444
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.12 E-value=1.1 Score=34.66 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcc--cccEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCcH-HHHHHHHhhC-CCcEE
Q psy4398 157 ACNILTTLISNL--SIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRI-EMIRTLTQHL-KIPVI 232 (306)
Q Consensus 157 ~~eiv~~v~~~~--~~pv~vKir~g~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~p~~~-~~v~~i~~~~-~ipvi 232 (306)
+.+.++.+++.. ..++.|-+. + .+-+..+.++|+|.|.+...+ |..+ +++..++..- ++.+-
T Consensus 64 ~~~~~~~~~~~~~~~~~I~VEv~---~----~~e~~~a~~~g~d~i~LDn~~-------pe~~k~~~~~lk~~~~~i~lE 129 (170)
T d1o4ua1 64 AERAVQEVRKIIPFTTKIEVEVE---N----LEDALRAVEAGADIVMLDNLS-------PEEVKDISRRIKDINPNVIVE 129 (170)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEES---S----HHHHHHHHHTTCSEEEEESCC-------HHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHhhCCCCceEEEEeC---c----HHHHHHHHhcCccEEEEcCcC-------hhhHhHHHHHHHhhCCcEEEE
Confidence 356677777654 355777666 2 344555667999999987553 2222 2334444433 57889
Q ss_pred EecCCCCHHHHHHHHHhhh---hhccccC
Q psy4398 233 ANGGSKEIVDYGGVFSLNC---AFLRNHY 258 (306)
Q Consensus 233 a~GGI~s~~~~~~~l~~~v---~vGrall 258 (306)
++|||+ ++++.+..+.|+ .+|...+
T Consensus 130 aSGGI~-~~ni~~~a~~GVD~Is~g~lt~ 157 (170)
T d1o4ua1 130 VSGGIT-EENVSLYDFETVDVISSSRLTL 157 (170)
T ss_dssp EEECCC-TTTGGGGCCTTCCEEEEGGGTS
T ss_pred EECCCC-HHHHHHHHHcCCCEEEcCcccc
Confidence 999987 677777666666 5554434
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=80.72 E-value=2.2 Score=35.43 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=44.6
Q ss_pred HHHHHHHHH-HHhcCCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHhcccccEEEEeccCCChHHHHHHHHH
Q psy4398 113 PERALEAAK-KVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKR 191 (306)
Q Consensus 113 ~~~~~~aa~-~~~~g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~g~~~~~~~~~a~~ 191 (306)
++...+-++ .+++|+|.|||-.-+-.+.... - +-.+..+.+..+++.+++..+.+++|-.+ -.+.++.
T Consensus 41 ~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~--i--s~~eE~~rl~p~i~~~~~~~~~~iSIDT~-------~~~Va~~ 109 (273)
T d1tx2a_ 41 VDAAVRHAKEMRDEGAHIIDIGGESTRPGFAK--V--SVEEEIKRVVPMIQAVSKEVKLPISIDTY-------KAEVAKQ 109 (273)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCC----CCC--C--CHHHHHHHHHHHHHHHHHHSCSCEEEECS-------CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEeeceeccccccc--c--CHHHHHHhhchhHHhhhccceEEEehHHh-------hHHHHHH
Confidence 344444444 4457999999966553332111 1 11223345666777777766778877766 2456666
Q ss_pred HHHcCCcEEE
Q psy4398 192 LEACGIIAIG 201 (306)
Q Consensus 192 l~~~G~d~i~ 201 (306)
+.++|++.|.
T Consensus 110 al~~G~~iIN 119 (273)
T d1tx2a_ 110 AIEAGAHIIN 119 (273)
T ss_dssp HHHHTCCEEE
T ss_pred HHHcCCeEEe
Confidence 6677777666
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=80.37 E-value=3.9 Score=33.22 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=54.8
Q ss_pred cCCCCCCceEEEecC--------CCHHHHHHHHHHHhc-CCCEEEEccCCCccccccCCccccccCChHHHHHHHHHHHh
Q psy4398 96 TCPREKNKIILQIGT--------ADPERALEAAKKVEH-DVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLIS 166 (306)
Q Consensus 96 ~~~~~~~p~ivql~g--------~~~~~~~~aa~~~~~-g~d~veln~gcP~~~~~~~~~G~~l~~~~~~~~eiv~~v~~ 166 (306)
.|++.+.|+++...- .+++.++.+++.+.+ |+|.|-+...- +.+ +.-+.+..
T Consensus 131 e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~~~p~----------------~~~---~~~~~v~~ 191 (251)
T d1ojxa_ 131 DAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTG----------------DPK---TFSWAVKV 191 (251)
T ss_dssp HHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEECCCS----------------SHH---HHHHHHHH
T ss_pred HHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEecCCC----------------cHH---HHHHHHHh
Confidence 344456777766531 246777777777766 88888875331 112 22233344
Q ss_pred cccccEEEEecc-CCChHHHHHHHHHHHHcCCcEEEE
Q psy4398 167 NLSIPVSCKIRV-FHNEADTIALCKRLEACGIIAIGV 202 (306)
Q Consensus 167 ~~~~pv~vKir~-g~~~~~~~~~a~~l~~~G~d~i~v 202 (306)
....|+.+--.. +.+.+++.+.++.+-++|+.++.+
T Consensus 192 a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~ 228 (251)
T d1ojxa_ 192 AGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAV 228 (251)
T ss_dssp TTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEee
Confidence 556676554332 346677888888888899999875
|