Diaphorina citri psyllid: psy4528


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80-------
MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPPRSPHHFNSYTGQLNVTVQENGNGQWPE
cccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccccccc
***NEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY**********************YTGQL**************
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MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPPRSPHHFNSYTGQLNVTVQENGNGQWPE

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Transcription factor collier May act as a 'second-level regulator' of head patterning. Required for establishment of the PS(-1)/PS0 parasegmental border and formation of the intercalary segment. Required for expression of the segment polarity genes hedgehog, engrailed and wingless, and the segment-identity genes CAP and collar in the intercalary segment. Required at the onset of the gastrulation for the correct formation of the mandibular segment.confidentP56721
Transcription factor COE1 Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.confidentQ9UH73
Transcription factor COE1 Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.confidentQ63398

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0003677 [MF]DNA bindingconfidentGO:0097159, GO:0003674, GO:1901363, GO:0003676, GO:0005488
GO:0045893 [BP]positive regulation of transcription, DNA-dependentconfidentGO:0009893, GO:0019222, GO:0031328, GO:0031326, GO:0031325, GO:2001141, GO:0031323, GO:0010628, GO:0050789, GO:0080090, GO:0010604, GO:0009891, GO:2000112, GO:0019219, GO:0065007, GO:0048518, GO:0010468, GO:0045935, GO:0060255, GO:0009889, GO:0050794, GO:0008150, GO:0051171, GO:0051173, GO:0051252, GO:0051254, GO:0006355, GO:0010557, GO:0010556, GO:0048522
GO:0003700 [MF]sequence-specific DNA binding transcription factor activityprobableGO:0003674, GO:0001071
GO:0005634 [CC]nucleusprobableGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226
GO:0007526 [BP]larval somatic muscle developmentprobableGO:0032502, GO:0009791, GO:0032501, GO:0044707, GO:0048569, GO:0048856, GO:0007275, GO:0044767, GO:0048513, GO:0002164, GO:0008150, GO:0061061, GO:0048731, GO:0007525, GO:0044699
GO:0009608 [BP]response to symbiontprobableGO:0008150, GO:0009607, GO:0050896, GO:0051707, GO:0051704
GO:0042694 [BP]muscle cell fate specificationprobableGO:0032502, GO:0045165, GO:0009987, GO:0048869, GO:0001708, GO:0030154, GO:0044767, GO:0044763, GO:0061061, GO:0008150, GO:0042693, GO:0042692, GO:0044699, GO:0048856
GO:0035289 [BP]posterior head segmentationprobableGO:0032502, GO:0007389, GO:0032501, GO:0009880, GO:0044707, GO:0048856, GO:0044767, GO:0009790, GO:0060322, GO:0008150, GO:0003002, GO:0035282, GO:0007350, GO:0007275, GO:0044699, GO:0035287
GO:0007474 [BP]imaginal disc-derived wing vein specificationprobableGO:0048563, GO:0048569, GO:0035107, GO:0009887, GO:0035220, GO:0009791, GO:0035120, GO:0002165, GO:0032501, GO:0009653, GO:0007275, GO:0044699, GO:0007389, GO:0007472, GO:0007552, GO:0007476, GO:0048513, GO:0032502, GO:0048707, GO:0009886, GO:0035114, GO:0008150, GO:0003002, GO:0044767, GO:0044707, GO:0007444, GO:0048856, GO:0007560, GO:0048731, GO:0048736, GO:0048737
GO:0045087 [BP]innate immune responseprobableGO:0002376, GO:0050896, GO:0006952, GO:0006950, GO:0008150, GO:0006955
GO:0016204 [BP]determination of muscle attachment siteprobableGO:0016203, GO:0032502, GO:0007517, GO:0032501, GO:0044767, GO:0044707, GO:0044700, GO:0009987, GO:0048856, GO:0008150, GO:0060538, GO:0048513, GO:0044763, GO:0023052, GO:0048731, GO:0007267, GO:0007154, GO:0007275, GO:0044699, GO:0061061
GO:0046983 [MF]protein dimerization activityprobableGO:0003674, GO:0005488, GO:0005515
GO:0008134 [MF]transcription factor bindingprobableGO:0003674, GO:0005488, GO:0005515
GO:0035203 [BP]regulation of lamellocyte differentiationprobableGO:0050793, GO:0048580, GO:0008150, GO:0045595, GO:0065007, GO:2000026, GO:0051239, GO:0002682, GO:0050794, GO:0045610, GO:0050789, GO:0045613
GO:0035291 [BP]specification of segmental identity, intercalary segmentprobableGO:0032502, GO:0007389, GO:0032501, GO:0097065, GO:0044707, GO:0009790, GO:0007380, GO:0048856, GO:0035288, GO:0007379, GO:0009880, GO:0060322, GO:0044767, GO:0003002, GO:0008150, GO:0035282, GO:0007350, GO:0007275, GO:0044699, GO:0035287
GO:0070742 [MF]C2H2 zinc finger domain bindingprobableGO:0003674, GO:0019904, GO:0005515, GO:0005488
GO:0046872 [MF]metal ion bindingprobableGO:0043169, GO:0003674, GO:0005488, GO:0043167
GO:0006351 [BP]transcription, DNA-dependentprobableGO:0032774, GO:0090304, GO:0044249, GO:0034641, GO:0006807, GO:0034645, GO:1901362, GO:1901360, GO:1901576, GO:0044260, GO:0071704, GO:0010467, GO:0018130, GO:0006139, GO:0009987, GO:0006725, GO:0009058, GO:0009059, GO:0008150, GO:0008152, GO:0034654, GO:0046483, GO:0016070, GO:0044238, GO:0044271, GO:0044237, GO:0043170, GO:0019438
GO:0001700 [BP]embryonic development via the syncytial blastodermprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0044767, GO:0009790, GO:0009792, GO:0008150, GO:0007275, GO:0044699
GO:0046427 [BP]positive regulation of JAK-STAT cascadeprobableGO:0023051, GO:0046425, GO:0009966, GO:0010740, GO:0048584, GO:0048583, GO:0050794, GO:0023056, GO:0065007, GO:0009967, GO:0048518, GO:0008150, GO:0010647, GO:0010646, GO:0010627, GO:0050789, GO:0048522

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3MLP, chain A
Confidence level:very confident
Coverage over the Query: 5-18,30-49
View the alignment between query and template
View the model in PyMOL