Psyllid ID: psy4528

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPPRSPHHFNSYTGQLNVTVQENGNGQWPE
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccEccccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
MSLNEPTIDYGFQRLQkliprhpgdpeklpkEIILKRAADLAEALYsmprnnqlplpapprsphhfnsytgQLNVTVQengngqwpe
Flexible Loop (DISEMBL)
MSLNEPTIDYGFQRLQKLIprhpgdpeklpKEIILKRAADLAEALYSMPRNNQLPLPAPPRSPHHFNSYTGQLNVTVQENGNGQWPE
Low Complexity Region (SEG)
MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPPRSPHHFNSYTGQLNVTVQENGNGQWPE
Disordered region (IsUnstruct)
***********F********************IILKRAA*L**********************************************
Disordered Region (DISOPRED)
***NEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY**********************YTGQL**************
Disordered Region (DISEMBL)
MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPPRSPHHFNSYTGQLNVTVQENGNGQWPE
Disordered Region (DISPRO)
**LNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPPRSPHHFNSYTGQLNVTVQEN*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPPRSPHHFNSYTGQLNVTVQENGNGQWPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
P56721	575	Transcription factor coll	yes	N/A	0.885	0.133	0.720	2e-27
Q63398	584	Transcription factor COE1	yes	N/A	0.896	0.133	0.557	2e-22
Q07802	591	Transcription factor COE1	yes	N/A	0.896	0.131	0.557	2e-22
Q9UH73	591	Transcription factor COE1	yes	N/A	0.896	0.131	0.557	2e-22
O73742	598	Transcription factor COE3	N/A	N/A	0.896	0.130	0.528	1e-21
Q9HAK2	575	Transcription factor COE2	no	N/A	0.942	0.142	0.527	2e-21
Q6P4K7	575	Transcription factor coe2	no	N/A	0.908	0.137	0.533	2e-21
B7ZRI2	580	Transcription factor coe2	N/A	N/A	0.908	0.136	0.523	3e-21
Q9H4W6	596	Transcription factor COE3	no	N/A	0.597	0.087	0.846	3e-21
O08792	575	Transcription factor COE2	no	N/A	0.942	0.142	0.518	3e-21

>sp|P56721|COLL_DROME Transcription factor collier OS=Drosophila melanogaster GN=kn PE=2 SV=2

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 67/86 (77%), Gaps = 9/86 (10%)

Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPPR 61
           +LNEPTIDYGFQRLQKLIPRHPGDPEKL KEIILKRAADL EALYSMPR+        P 
Sbjct: 384 ALNEPTIDYGFQRLQKLIPRHPGDPEKLQKEIILKRAADLVEALYSMPRS--------PG 435

Query: 62  SPHHFNSYTGQLNVTVQENGNGQWPE 87
               FNSY GQL V+VQ+ G+GQW E
Sbjct: 436 GSTGFNSYAGQLAVSVQD-GSGQWTE 460

May act as a 'second-level regulator' of head patterning. Required for establishment of the PS(-1)/PS0 parasegmental border and formation of the intercalary segment. Required for expression of the segment polarity genes hedgehog, engrailed and wingless, and the segment-identity genes CAP and collar in the intercalary segment. Required at the onset of the gastrulation for the correct formation of the mandibular segment.
Drosophila melanogaster (taxid: 7227)

>sp|Q63398|COE1_RAT Transcription factor COE1 OS=Rattus norvegicus GN=Ebf1 PE=1 SV=2

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 66/104 (63%), Gaps = 26/104 (25%)

Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
           +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ        
Sbjct: 339 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAA 398

Query: 54  --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQE 79
                   +P     LPA   +  H      NS++GQL V V E
Sbjct: 399 DIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSE 442

Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Rattus norvegicus (taxid: 10116)

>sp|Q07802|COE1_MOUSE Transcription factor COE1 OS=Mus musculus GN=Ebf1 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 66/104 (63%), Gaps = 26/104 (25%)

Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
           +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ        
Sbjct: 346 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAA 405

Query: 54  --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQE 79
                   +P     LPA   +  H      NS++GQL V V E
Sbjct: 406 DIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSE 449

Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Mus musculus (taxid: 10090)

>sp|Q9UH73|COE1_HUMAN Transcription factor COE1 OS=Homo sapiens GN=EBF1 PE=1 SV=2

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 66/104 (63%), Gaps = 26/104 (25%)

Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
           +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ        
Sbjct: 346 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAA 405

Query: 54  --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQE 79
                   +P     LPA   +  H      NS++GQL V V E
Sbjct: 406 DIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSE 449

Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Homo sapiens (taxid: 9606)

>sp|O73742|COE3_XENLA Transcription factor COE3 OS=Xenopus laevis GN=coe3 PE=2 SV=2

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 66/104 (63%), Gaps = 26/104 (25%)

Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
           +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP NNQ        
Sbjct: 348 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEIILKRAA 407

Query: 54  --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQE 79
                   +P     +P+   +P H      NS++ QL V V E
Sbjct: 408 DIAEALYSVPRNHNQIPSLANTPSHSGMMGVNSFSSQLAVNVSE 451

Acts transcriptional activator.

Xenopus laevis (taxid: 8355)

>sp|Q9HAK2|COE2_HUMAN Transcription factor COE2 OS=Homo sapiens GN=EBF2 PE=1 SV=4

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 66/108 (61%), Gaps = 26/108 (24%)

Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
           +LNEPTIDYGFQRLQK+IPRHPGDPE+L KE++LKRAADL EALY  P NNQ        
Sbjct: 337 ALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAA 396

Query: 54  --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQENGNG 83
                   +P     LPA   SP H      NSY  QL V++ E+  G
Sbjct: 397 DIAEALYSVPRNPSQLPALSSSPAHSGMMGINSYGSQLGVSISESTQG 444

Transcription factor that, in osteoblasts, activates the decoy receptor for RANKL, TNFRSF11B, which in turn regulates osteoclast differentiation. Acts in synergy with the Wnt-responsive LEF1/CTNNB1 pathway. Recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Homo sapiens (taxid: 9606)

>sp|Q6P4K7|COE2_XENTR Transcription factor coe2 OS=Xenopus tropicalis GN=ebf2 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 66/105 (62%), Gaps = 26/105 (24%)

Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
           +LNEPTIDYGFQRLQK+IPRHPGDPE+L KE++LKRAADL EALY  P NNQ        
Sbjct: 338 ALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAA 397

Query: 54  --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQEN 80
                   +P     +PA   SP H      NSY GQL V++ E+
Sbjct: 398 DIAEALYSVPRNHNQIPALSSSPVHSGMMGINSYGGQLGVSISES 442

May play a pivotal role in the transcriptional cascade that specifies primary neurons in embryos. Stabilizes the higher neural potential of selected progenitor cells that express neurog2/X-ngnr-1 by maintaining Delta-Notch signaling. Thus ensures the transition between neural competence and irreversible commitment to a neural fate. Also promotes neuronal differentiation by activating neurod1 expression, directly or indirectly.

Xenopus tropicalis (taxid: 8364)

>sp|B7ZRI2|COE2B_XENLA Transcription factor coe2-B OS=Xenopus laevis GN=ebf2-b PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 66/105 (62%), Gaps = 26/105 (24%)

Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
           +LNEPTIDYGFQRLQK+IPRHPGDPE++ KE++LKRAADL EALY  P NNQ        
Sbjct: 343 ALNEPTIDYGFQRLQKVIPRHPGDPERMAKEMLLKRAADLVEALYGTPHNNQDIILKRAA 402

Query: 54  --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQEN 80
                   +P     +PA   SP H      NSY GQL V++ E+
Sbjct: 403 DIAEALYSVPRNHNQIPALSSSPVHSGMMGINSYGGQLGVSISES 447

May play a pivotal role in the transcriptional cascade that specifies primary neurons in embryos. Stabilizes the higher neural potential of selected progenitor cells that express neurog2/X-ngnr-1 by maintaining Delta-Notch signaling. Thus ensures the transition between neural competence and irreversible commitment to a neural fate. Also promotes neuronal differentiation by activating neurod1 expression, directly or indirectly.

Xenopus laevis (taxid: 8355)

>sp|Q9H4W6|COE3_HUMAN Transcription factor COE3 OS=Homo sapiens GN=EBF3 PE=1 SV=2

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
           +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP NNQ
Sbjct: 347 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQ 398

Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Homo sapiens (taxid: 9606)

>sp|O08792|COE2_MOUSE Transcription factor COE2 OS=Mus musculus GN=Ebf2 PE=1 SV=4

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 66/108 (61%), Gaps = 26/108 (24%)

Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
           +LNEPTIDYGFQRLQK+IPRHPGDPE+L KE++LKRAADL EALY  P NNQ        
Sbjct: 337 ALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAA 396

Query: 54  --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQENGNG 83
                   +P     +PA   SP H      NSY  QL V++ E+  G
Sbjct: 397 DIAEALYSVPRNPSQIPALSSSPAHSGMMGINSYGSQLGVSISESTQG 444

Transcription factor that, in osteoblasts, activates the decoy receptor for RANKL, TNFRSF11B, which in turn regulates osteoclast differentiation. Acts in synergy with the Wnt-responsive LEF1/CTNNB1 pathway. Recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
189234876	907	PREDICTED: similar to knot CG10197-PB [T	0.988	0.094	0.789	4e-34
270002853	918	knot [Tribolium castaneum]	0.988	0.093	0.789	4e-34
242006753	657	transcription factor COE1, putative [Ped	0.977	0.129	0.778	1e-32
357602156	693	hypothetical protein KGM_09934 [Danaus p	0.977	0.122	0.818	8e-32
350412365	657	PREDICTED: transcription factor collier-	1.0	0.132	0.676	2e-29
340709458	679	PREDICTED: transcription factor collier-	1.0	0.128	0.676	3e-29
380023596	700	PREDICTED: transcription factor collier-	1.0	0.124	0.676	3e-29
328792877	706	PREDICTED: transcription factor collier	1.0	0.123	0.676	3e-29
307198173	250	Transcription factor collier [Harpegnath	1.0	0.348	0.676	3e-29
383860678	667	PREDICTED: LOW QUALITY PROTEIN: transcri	1.0	0.130	0.676	4e-29

>gi|189234876|ref|XP_973686.2| PREDICTED: similar to knot CG10197-PB [Tribolium castaneum]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 80/95 (84%), Gaps = 9/95 (9%)

Query: 1   MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPP 60
           +SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY+MPRNNQL L A P
Sbjct: 642 VSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYTMPRNNQLSLSA-P 700

Query: 61  RSP--------HHFNSYTGQLNVTVQENGNGQWPE 87
           RSP          FN+YTGQL V+VQ+NGNGQW E
Sbjct: 701 RSPTMANNGMTSTFNTYTGQLAVSVQDNGNGQWTE 735

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002853|gb|EEZ99300.1| knot [Tribolium castaneum]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 80/95 (84%), Gaps = 9/95 (9%)

Query: 1   MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPP 60
           +SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY+MPRNNQL L A P
Sbjct: 694 VSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYTMPRNNQLSLSA-P 752

Query: 61  RSP--------HHFNSYTGQLNVTVQENGNGQWPE 87
           RSP          FN+YTGQL V+VQ+NGNGQW E
Sbjct: 753 RSPTMANNGMTSTFNTYTGQLAVSVQDNGNGQWTE 787

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006753|ref|XP_002424210.1| transcription factor COE1, putative [Pediculus humanus corporis] gi|212507564|gb|EEB11472.1| transcription factor COE1, putative [Pediculus humanus corporis]

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 78/95 (82%), Gaps = 10/95 (10%)

Query: 1   MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPP 60
           +SL+EPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPR NQ  L + P
Sbjct: 466 VSLSEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRTNQ--LMSGP 523

Query: 61  RSPHH--------FNSYTGQLNVTVQENGNGQWPE 87
           RSP          FNSYTGQL V+VQENGNGQW E
Sbjct: 524 RSPSMSNNGMPGGFNSYTGQLAVSVQENGNGQWTE 558

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357602156|gb|EHJ63297.1| hypothetical protein KGM_09934 [Danaus plexippus]

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 75/88 (85%), Gaps = 3/88 (3%)

Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPPR 61
           +LNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQL L A PR
Sbjct: 448 ALNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLGLSA-PR 506

Query: 62  SPHH--FNSYTGQLNVTVQENGNGQWPE 87
           SP    FNSYTGQL V+VQ+    QW E
Sbjct: 507 SPSSMPFNSYTGQLAVSVQDTAASQWTE 534

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412365|ref|XP_003489621.1| PREDICTED: transcription factor collier-like [Bombus impatiens]

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 75/102 (73%), Gaps = 15/102 (14%)

Query: 1   MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPP 60
           +SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPR+    +   P
Sbjct: 432 VSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRSGNAGITGAP 491

Query: 61  RSPHH--------------FNSYTGQLNVTVQENGN-GQWPE 87
           RSP                FNSYTGQL VTVQENG+  +W +
Sbjct: 492 RSPGSGHPPAPPTSSSATAFNSYTGQLAVTVQENGSAAKWTD 533

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709458|ref|XP_003393325.1| PREDICTED: transcription factor collier-like [Bombus terrestris]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 75/102 (73%), Gaps = 15/102 (14%)

Query: 1   MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPP 60
           +SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPR+    +   P
Sbjct: 454 VSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRSGNAGITGAP 513

Query: 61  RSPHH--------------FNSYTGQLNVTVQENGN-GQWPE 87
           RSP                FNSYTGQL VTVQENG+  +W +
Sbjct: 514 RSPGSGHPPAPPTSSSATAFNSYTGQLAVTVQENGSAAKWTD 555

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023596|ref|XP_003695604.1| PREDICTED: transcription factor collier-like [Apis florea]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 75/102 (73%), Gaps = 15/102 (14%)

Query: 1   MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPP 60
           +SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPR+    +   P
Sbjct: 481 VSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRSGNAGITGAP 540

Query: 61  RSPHH--------------FNSYTGQLNVTVQENGN-GQWPE 87
           RSP                FNSYTGQL VTVQENG+  +W +
Sbjct: 541 RSPGSGHPPAPPTSSSATAFNSYTGQLAVTVQENGSAAKWTD 582

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792877|ref|XP_394171.4| PREDICTED: transcription factor collier [Apis mellifera]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 75/102 (73%), Gaps = 15/102 (14%)

Query: 1   MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPP 60
           +SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPR+    +   P
Sbjct: 481 VSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRSGNAGITGAP 540

Query: 61  RSPHH--------------FNSYTGQLNVTVQENGN-GQWPE 87
           RSP                FNSYTGQL VTVQENG+  +W +
Sbjct: 541 RSPGSGHPPAPPTSSSATAFNSYTGQLAVTVQENGSAAKWTD 582

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198173|gb|EFN79194.1| Transcription factor collier [Harpegnathos saltator]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 74/102 (72%), Gaps = 15/102 (14%)

Query: 1   MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPP 60
            SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPR+    +   P
Sbjct: 132 FSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRSGNTGITGAP 191

Query: 61  RSPHH--------------FNSYTGQLNVTVQENGN-GQWPE 87
           RSP                FNSYTGQL VTVQENG+  +W +
Sbjct: 192 RSPGSVHAPAPPTSSSATAFNSYTGQLAVTVQENGSAAKWTD 233

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860678|ref|XP_003705816.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor collier-like [Megachile rotundata]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 74/102 (72%), Gaps = 15/102 (14%)

Query: 1   MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPP 60
           +SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPR+    +   P
Sbjct: 442 VSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRSGNAGITGAP 501

Query: 61  RSPHH--------------FNSYTGQLNVTVQENGN-GQWPE 87
           RSP                FNSYTGQL VTVQENG   +W +
Sbjct: 502 RSPGSGHPPAPPTSSSATAFNSYTGQLAVTVQENGTAAKWTD 543

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
FB|FBgn0001319	575	kn "knot" [Drosophila melanoga	0.885	0.133	0.720	3.5e-25
UNIPROTKB|F1RR33	412	LOC100520467 "Uncharacterized	0.597	0.126	0.865	8.7e-21
UNIPROTKB|F1MGH0	403	F1MGH0 "Uncharacterized protei	0.597	0.129	0.846	1.3e-20
UNIPROTKB|F1NNP7	414	F1NNP7 "Uncharacterized protei	0.597	0.125	0.846	1.5e-20
UNIPROTKB|F1PG23	428	EBF3 "Uncharacterized protein"	0.597	0.121	0.846	1.8e-20
UNIPROTKB|E5RFQ1	523	EBF1 "Transcription factor COE	0.597	0.099	0.865	2.2e-20
UNIPROTKB|C9J6M4	644	EBF4 "Transcription factor COE	0.597	0.080	0.826	2.5e-20
RGD|620953	584	Ebf1 "early B-cell factor 1" [	0.597	0.089	0.865	2.9e-20
UNIPROTKB|F1N9Q3	591	EBF1 "Uncharacterized protein"	0.597	0.087	0.865	2.9e-20
UNIPROTKB|Q9UH73	591	EBF1 "Transcription factor COE	0.597	0.087	0.865	2.9e-20

FB|FBgn0001319 kn "knot" [Drosophila melanogaster (taxid:7227)]

 Score = 293 (108.2 bits), Expect = 3.5e-25, P = 3.5e-25
 Identities = 62/86 (72%), Positives = 67/86 (77%)

Query:     2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPPR 61
             +LNEPTIDYGFQRLQKLIPRHPGDPEKL KEIILKRAADL EALYSMPR+        P 
Sbjct:   384 ALNEPTIDYGFQRLQKLIPRHPGDPEKLQKEIILKRAADLVEALYSMPRS--------PG 435

Query:    62 SPHHFNSYTGQLNVTVQENGNGQWPE 87
                 FNSY GQL V+VQ+ G+GQW E
Sbjct:   436 GSTGFNSYAGQLAVSVQD-GSGQWTE 460

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0035291 "specification of segmental identity, intercalary segment" evidence=IMP

GO:0035287 "head segmentation" evidence=IMP

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP

GO:0007389 "pattern specification process" evidence=TAS

GO:0005634 "nucleus" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0007350 "blastoderm segmentation" evidence=TAS

GO:0035288 "anterior head segmentation" evidence=TAS

GO:0035289 "posterior head segmentation" evidence=TAS

GO:0035203 "regulation of lamellocyte differentiation" evidence=IMP

GO:0009608 "response to symbiont" evidence=IMP

GO:0045087 "innate immune response" evidence=IMP

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IGI;IMP

GO:0016204 "determination of muscle attachment site" evidence=IMP

GO:0007526 "larval somatic muscle development" evidence=IMP

GO:0042694 "muscle cell fate specification" evidence=IMP

UNIPROTKB|F1RR33 LOC100520467 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 248 (92.4 bits), Expect = 8.7e-21, P = 8.7e-21
 Identities = 45/52 (86%), Positives = 49/52 (94%)

Query:     2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
             +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ
Sbjct:   169 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQ 220

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|F1MGH0 F1MGH0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 246 (91.7 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query:     2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
             +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP NNQ
Sbjct:   154 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQ 205

GO:0005634 "nucleus" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|F1NNP7 F1NNP7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 246 (91.7 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query:     2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
             +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP NNQ
Sbjct:   164 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQ 215

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PG23 EBF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 246 (91.7 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 44/52 (84%), Positives = 49/52 (94%)

Query:     2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
             +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP NNQ
Sbjct:   179 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQ 230

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|E5RFQ1 EBF1 "Transcription factor COE1" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 2.2e-20, P = 2.2e-20
 Identities = 45/52 (86%), Positives = 49/52 (94%)

Query:     2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
             +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ
Sbjct:   338 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQ 389

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|C9J6M4 EBF4 "Transcription factor COE4" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
 Identities = 43/52 (82%), Positives = 50/52 (96%)

Query:     2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
             +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADLAEALY +P +NQ
Sbjct:   440 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLAEALYGVPGSNQ 491

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|620953 Ebf1 "early B-cell factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 45/52 (86%), Positives = 49/52 (94%)

Query:     2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
             +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ
Sbjct:   339 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQ 390

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0070742 "C2H2 zinc finger domain binding" evidence=IPI

UNIPROTKB|F1N9Q3 EBF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 248 (92.4 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 45/52 (86%), Positives = 49/52 (94%)

Query:     2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
             +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ
Sbjct:   346 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQ 397

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q9UH73 EBF1 "Transcription factor COE1" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 45/52 (86%), Positives = 49/52 (94%)

Query:     2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
             +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ
Sbjct:   346 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQ 397

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P56721	COLL_DROME	No assigned EC number	0.7209	0.8850	0.1339	yes	N/A
Q9UH73	COE1_HUMAN	No assigned EC number	0.5576	0.8965	0.1319	yes	N/A
Q93705	UNC3_CAEEL	No assigned EC number	0.6481	0.6206	0.1099	yes	N/A
Q07802	COE1_MOUSE	No assigned EC number	0.5576	0.8965	0.1319	yes	N/A
Q63398	COE1_RAT	No assigned EC number	0.5576	0.8965	0.1335	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	87
smart00353	53	smart00353, HLH, helix loop helix domain	1e-04

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 8  IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAAD 40
          I+  F  L+ L+P  P + +KL K  IL+ A +
Sbjct: 11 INEAFDELRSLLPTLPKN-KKLSKAEILRLAIE 42

Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
KOG3836|consensus	605		98.49
KOG3836|consensus	605		97.93
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	96.64
smart00353	53	HLH helix loop helix domain.	96.16
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	94.49
KOG0561|consensus	373		93.27
KOG4029|consensus	228		89.91

>KOG3836|consensus

Probab=98.49  E-value=1e-07  Score=81.73  Aligned_cols=81  Identities=23%  Similarity=0.193  Sum_probs=68.3

Q ss_pred             CCCCcchhhhhhhhhccCCCCCCCCCchH-----HHHHHhHHhHHHHHhCCCCCCCCC-C-------------------C
Q psy4528           3 LNEPTIDYGFQRLQKLIPRHPGDPEKLPK-----EIILKRAADLAEALYSMPRNNQLP-L-------------------P   57 (87)
Q Consensus         3 lneptIdygfqrl~K~~pr~pGdpErlpK-----eiiLkRaadl~ealy~~p~n~q~~-l-------------------~   57 (87)
                      |++++|||+++|.++.+++|+++||...+     |++++||+|+.++.+++++.+++. +                   .
T Consensus       163 l~~rlID~~~~~~~it~~~q~knpel~~~l~~tse~~~sR~~d~s~s~~~rn~~~sd~vi~~rff~~F~ls~~~sclk~a  242 (605)
T KOG3836|consen  163 LNVRLIDSGVTKQQITYLGQDKNPELSRSLLCTSESLCSRASDLSKSCRRRNEPNSDSVIKPRFFLAFFLSCLQSCLKNA  242 (605)
T ss_pred             ccccccccccccccccccccCCChhhhhhhcccchhhhhhhhhhhHHhhcCCCCCccccchhhhhhhhHhhhchhhhccC
Confidence            78999999999999999999999999999     999999999999999999999993 2                   1


Q ss_pred             CCCCCC---------------CCCCccccccccccccCCCC
Q psy4528          58 APPRSP---------------HHFNSYTGQLNVTVQENGNG   83 (87)
Q Consensus        58 ~~p~sp---------------~g~nSy~~ql~vsv~e~~~~   83 (87)
                      +.||-.               +|.|.+..+|+.++.|.+.+
T Consensus       243 gvprd~~~~Q~~i~~~~~v~~~g~n~~~~als~~~~~~s~~  283 (605)
T KOG3836|consen  243 GVPRDMRRFQVLINGGVEVTLLGANFKDIALSTQCSEESTM  283 (605)
T ss_pred             CCccccccccccccccceecccccchhhhhhcccccccccc
Confidence            233322               66777788888888877653

>KOG3836|consensus

Probab=97.93  E-value=3.9e-06  Score=72.22  Aligned_cols=71  Identities=23%  Similarity=0.162  Sum_probs=58.5

Q ss_pred             CCCCCcchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhCCCCCCCCCCCCCCCCCCCCCccccccccccccC
Q psy4528           2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPPRSPHHFNSYTGQLNVTVQEN   80 (87)
Q Consensus         2 ~lneptIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~~p~n~q~~l~~~p~sp~g~nSy~~ql~vsv~e~   80 (87)
                      ++++|.||+.||++++.+|++||||+++.+...+|||+++.+..+-+++.--        |-...+++.+|+.....++
T Consensus       418 ~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~~~~~~~~~~~r~~~--------s~~~~~~~~~~~~~~~t~~  488 (605)
T KOG3836|consen  418 KGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAISLKSVNGMIARQVF--------SNYETSLEDGQLTRLLTDT  488 (605)
T ss_pred             ccCccchhcccccccccccCCCCCHHHhhhhhhhhhhhhccccccccccccc--------cccccccccchhhhhhccc
Confidence            3689999999999999999999999999999999999999999887754421        3345677777777766653

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=96.64  E-value=0.0029  Score=37.12  Aligned_cols=38  Identities=37%  Similarity=0.608  Sum_probs=33.5

Q ss_pred             chhhhhhhhhccCCC-CCCCCCchHHHHHHhHHhHHHHH
Q psy4528           8 IDYGFQRLQKLIPRH-PGDPEKLPKEIILKRAADLAEAL   45 (87)
Q Consensus         8 Idygfqrl~K~~pr~-pGdpErlpKeiiLkRaadl~eal   45 (87)
                      |.=+|+.|..++|.. .+...++.|-.||+.|.++++.|
T Consensus        16 i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~L   54 (55)
T PF00010_consen   16 INDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQL   54 (55)
T ss_dssp             HHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHh
Confidence            455899999999996 47779999999999999999876

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>smart00353 HLH helix loop helix domain

Probab=96.16  E-value=0.01  Score=33.99  Aligned_cols=40  Identities=33%  Similarity=0.527  Sum_probs=35.3

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhCC
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSM   48 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~~   48 (87)
                      |.-+|..|..++|-.. ...++.|..||..|.++++.|...
T Consensus        11 ~n~~~~~L~~lip~~~-~~~k~~k~~iL~~ai~yi~~L~~~   50 (53)
T smart00353       11 INEAFDELRSLLPTLP-NNKKLSKAEILRLAIEYIKSLQEE   50 (53)
T ss_pred             HHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            5568999999999776 789999999999999999988753

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=94.49  E-value=0.077  Score=30.58  Aligned_cols=39  Identities=36%  Similarity=0.610  Sum_probs=34.2

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS   47 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~   47 (87)
                      |.-+|..|..++|-.. ...++.|-.||..|.++++.|..
T Consensus        19 ~n~~~~~L~~llp~~~-~~~k~~k~~iL~~a~~yI~~L~~   57 (60)
T cd00083          19 INDAFDELRSLLPTLP-PSKKLSKAEILRKAVDYIKSLQE   57 (60)
T ss_pred             HHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Confidence            4568999999999887 67899999999999999998864

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>KOG0561|consensus

Probab=93.27  E-value=0.087  Score=43.78  Aligned_cols=39  Identities=46%  Similarity=0.734  Sum_probs=36.3

Q ss_pred             cchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528           7 TIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS   47 (87)
Q Consensus         7 tIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~   47 (87)
                      .|.-|||-|.-++|||-|  |+|-|--||++-+|++-.|-+
T Consensus        74 SINAGFqsLr~LlPr~eG--EKLSKAAILQQTa~yI~~Le~  112 (373)
T KOG0561|consen   74 SINAGFQSLRALLPRKEG--EKLSKAAILQQTADYIHQLEG  112 (373)
T ss_pred             hhhHHHHHHHHhcCcccc--hhhHHHHHHHHHHHHHHHHHh
Confidence            478899999999999977  899999999999999999987

>KOG4029|consensus

Probab=89.91  E-value=0.26  Score=36.44  Aligned_cols=43  Identities=26%  Similarity=0.424  Sum_probs=38.8

Q ss_pred             cchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhCCC
Q psy4528           7 TIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMP   49 (87)
Q Consensus         7 tIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~~p   49 (87)
                      .+.+||++|.+.+|-+|.-.-+|.|.=+|+=|-.|+.-|..+-
T Consensus       123 ~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL  165 (228)
T KOG4029|consen  123 SVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLL  165 (228)
T ss_pred             chhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHh
Confidence            4789999999999999997789999999999999999997643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	87
3mlp_A	402	Early B-Cell Factor 1 (Ebf1) Bound To Dna Length =		1e-22
3n50_A	159	Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH		4e-22
3muj_A	138	Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATIO		4e-20

>pdb|3MLP|A Chain A, Early B-Cell Factor 1 (Ebf1) Bound To Dna Length = 402

Iteration: 1
 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/52 (86%), Positives = 49/52 (94%)
Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
           +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ
Sbjct: 316 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQ 367

>pdb|3N50|A Chain A, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH DOMAINS Length = 159

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 49/52 (94%)
Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
           +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP NNQ
Sbjct: 91  ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQ 142

>pdb|3MUJ|A Chain A, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION HELICES Length = 138

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 41/48 (85%), Positives = 46/48 (95%)
Query: 2   SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMP 49
           +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP
Sbjct: 90  ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMP 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	87
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	2e-19
3mlp_A	402	Transcription factor COE1; transcription factor, p	2e-15

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A Length = 138

 Score = 75.4 bits (185), Expect = 2e-19
 Identities = 41/49 (83%), Positives = 46/49 (93%)

Query: 1   MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMP 49
            +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP
Sbjct: 89  TALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMP 137

>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A Length = 402

 Score = 68.0 bits (165), Expect = 2e-15
 Identities = 50/91 (54%), Positives = 57/91 (62%), Gaps = 14/91 (15%)

Query: 1   MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ------- 53
            +LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ       
Sbjct: 315 TALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRA 374

Query: 54  ----LPLPAPPRSPHHFNSYTGQLNVTVQEN 80
                 L + PR+    N     L      +
Sbjct: 375 ADIAEALYSVPRNH---NQLAAVLEHHHHHH 402

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
3mlp_A	402	Transcription factor COE1; transcription factor, p	100.0
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	99.98
3mlp_A	402	Transcription factor COE1; transcription factor, p	97.36
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	96.6
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	96.51
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	96.32
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	96.25
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	95.72
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	95.66
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	95.61
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	95.6
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	95.45
4ath_A	83	MITF, microphthalmia-associated transcription fact	92.69
4ati_A	118	MITF, microphthalmia-associated transcription fact	92.2
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	92.08
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	92.06
1a0a_A	63	BHLH, protein (phosphate system positive regulator	88.33
4h10_B	71	Circadian locomoter output cycles protein kaput; B	87.99
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	83.28

>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A

Probab=100.00  E-value=1.2e-34  Score=234.00  Aligned_cols=64  Identities=73%  Similarity=1.171  Sum_probs=34.4

Q ss_pred             CCCCCCcchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhCCCCCCCCCC-----------CCCCCCCC
Q psy4528           1 MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPL-----------PAPPRSPH   64 (87)
Q Consensus         1 ~~lneptIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~~p~n~q~~l-----------~~~p~sp~   64 (87)
                      ++|||||||||||||||+|||||||||||||||||||||||+|+|||||+|||++|           ++.||+|.
T Consensus       315 tALnePtIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~ealy~~p~~nqeiilkrAaDlAeAlys~PR~~~  389 (402)
T 3mlp_A          315 TALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHN  389 (402)
T ss_dssp             C---CCTTTTTTTTTTTC-----------CHHHHHHHHHHHHHHHTTCC--------------------------
T ss_pred             ecCCCCccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHhcCCCCCcchhhcccchhhhhhhccCCCCcc
Confidence            37999999999999999999999999999999999999999999999999999997           46777763

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A

Probab=99.98  E-value=8.2e-34  Score=203.45  Aligned_cols=50  Identities=82%  Similarity=1.376  Sum_probs=47.0

Q ss_pred             CCCCCCcchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhCCCC
Q psy4528           1 MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPR   50 (87)
Q Consensus         1 ~~lneptIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~~p~   50 (87)
                      ++|||||||||||||||+|||||||||||||||||||||||+|+|||||+
T Consensus        89 ~~l~ePtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~~~~~  138 (138)
T 3muj_A           89 TALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPH  138 (138)
T ss_dssp             ECCCSCCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHHCC--
T ss_pred             ecCCCCccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHhCCCC
Confidence            47999999999999999999999999999999999999999999999985

>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A

Probab=97.36  E-value=2.7e-05  Score=63.46  Aligned_cols=24  Identities=75%  Similarity=1.088  Sum_probs=0.0

Q ss_pred             hHHHHHHhHHhHHHHHhCCCCCCC
Q psy4528          30 PKEIILKRAADLAEALYSMPRNNQ   53 (87)
Q Consensus        30 pKeiiLkRaadl~ealy~~p~n~q   53 (87)
                      ..|||||||+|||||||++|++..
T Consensus       366 nqeiilkrAaDlAeAlys~PR~~~  389 (402)
T 3mlp_A          366 NQEIILKRAADIAEALYSVPRNHN  389 (402)
T ss_dssp             ------------------------
T ss_pred             cchhhcccchhhhhhhccCCCCcc
Confidence            468899999999999999999843

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=96.60  E-value=0.0023  Score=39.05  Aligned_cols=39  Identities=26%  Similarity=0.322  Sum_probs=34.3

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS   47 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~   47 (87)
                      |.=||++|.+.||-+|. ..+|.|.-+|+.|.+|+..|-.
T Consensus        17 iN~af~~LR~~lP~~~~-~~klSKi~tLr~Ai~YI~~L~~   55 (60)
T 2ql2_B           17 LNAALDNLRKVVPCYSK-TQKLSKIETLRLAKNYIWALSE   55 (60)
T ss_dssp             HHHHHHHHHHTSSSCCS-SSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCC-cCcCCHHHHHHHHHHHHHHHHH
Confidence            45689999999998875 4899999999999999998864

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.51  E-value=0.0027  Score=40.72  Aligned_cols=38  Identities=29%  Similarity=0.482  Sum_probs=34.0

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      +.=||.+|.++||-.|.| .+|.|.-+|+.|.+|+..|-
T Consensus        29 lN~aF~~LR~~VP~~p~~-kKLSKiEtLr~Ai~YI~~Lq   66 (68)
T 2lfh_A           29 MNHCYSRLRELVPGVPRG-TQLSQVEILQRVIDYILDLQ   66 (68)
T ss_dssp             HHHHHHHHHHHCCCCCTT-CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCC-CCccHHHHHHHHHHHHHHHH
Confidence            456999999999999955 79999999999999999873

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=96.32  E-value=0.004  Score=38.92  Aligned_cols=38  Identities=29%  Similarity=0.517  Sum_probs=33.3

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS   47 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~   47 (87)
                      |.-||+.|.++||-.|  .++|+|.-+|+.|.+|+..|-.
T Consensus        27 iN~af~~LR~~iP~~~--~~KlSKi~tLr~Ai~YI~~L~~   64 (68)
T 1mdy_A           27 VNEAFETLKRSTSSNP--NQRLPKVEILRNAIRYIEGLQA   64 (68)
T ss_dssp             HHHHHHHHHTTSCSCT--TSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHHHHHHH
Confidence            4568999999999776  3799999999999999999864

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=96.25  E-value=0.0028  Score=39.61  Aligned_cols=38  Identities=26%  Similarity=0.459  Sum_probs=33.7

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS   47 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~   47 (87)
                      |--+|..|..+||-.+|  +++.|..||+.|.++++.|-.
T Consensus        27 in~~f~~Lr~lvP~~~~--~k~sK~~iL~~Ai~YI~~L~~   64 (80)
T 1hlo_A           27 IKDSFHSLRDSVPSLQG--EKASRAQILDKATEYIQYMRR   64 (80)
T ss_dssp             HHHHHHHHHHHSGGGTT--SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCCCC--CCccHHHHHHHHHHHHHHHHH
Confidence            56799999999998775  689999999999999998853

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=95.72  E-value=0.0026  Score=40.47  Aligned_cols=40  Identities=23%  Similarity=0.316  Sum_probs=32.0

Q ss_pred             cchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           7 TIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         7 tIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      .|-.+|..|.++||-+......++|..||+.|.+++..|-
T Consensus        19 ~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq   58 (76)
T 3u5v_A           19 DINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLE   58 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHH
Confidence            3677999999999964422344589999999999999884

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=95.66  E-value=0.0081  Score=37.51  Aligned_cols=38  Identities=26%  Similarity=0.459  Sum_probs=33.5

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS   47 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~   47 (87)
                      |.-+|..|..+||-.++  +++.|..||+.|.++++.|-.
T Consensus        17 in~~f~~Lr~lvP~~~~--~k~sK~~iL~~Ai~YI~~L~~   54 (83)
T 1nkp_B           17 IKDSFHSLRDSVPSLQG--EKASRAQILDKATEYIQYMRR   54 (83)
T ss_dssp             HHHHHHHHHTTSGGGTT--SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHHHHHHH
Confidence            56799999999998774  689999999999999998853

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=95.61  E-value=0.011  Score=37.59  Aligned_cols=38  Identities=21%  Similarity=0.362  Sum_probs=32.5

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      |--||.+|.++||-.+ +.++.+|..||+.|.+++..|-
T Consensus        16 lk~~f~~Lr~~vP~~~-~~~k~sk~~iL~kA~~yI~~L~   53 (80)
T 1nlw_A           16 LRLSLEKLKGLVPLGP-DSSRHTTLSLLTKAKLHIKKLE   53 (80)
T ss_dssp             HHHHHHHHHHSSCCCS-SSCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCC-CCCCCCHHHHHHHHHHHHHHHH
Confidence            4458999999999664 4589999999999999998874

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=95.60  E-value=0.011  Score=39.86  Aligned_cols=39  Identities=26%  Similarity=0.441  Sum_probs=35.1

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS   47 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~   47 (87)
                      +.-||.+|.+.+|-.|.| .+|.|.=+|+.|.+|+..|-.
T Consensus        40 lN~AF~~LR~~vP~~p~~-kKLSKIETLRlAi~YI~~Lq~   78 (97)
T 4aya_A           40 MNDCYSKLKELVPSIPQN-KKVSKMEILQHVIDYILDLQI   78 (97)
T ss_dssp             HHHHHHHHHHHCTTSCSS-SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCC-CcccHHHHHHHHHHHHHHHHH
Confidence            677999999999999854 899999999999999998864

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=95.45  E-value=0.011  Score=38.02  Aligned_cols=38  Identities=32%  Similarity=0.448  Sum_probs=32.8

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      |-=+|..|.++||-.++ .+++.|..||+.|.+++..|-
T Consensus        21 ln~~f~~Lr~~vP~~~~-~~K~sK~~iL~~A~~YI~~L~   58 (88)
T 1nkp_A           21 LKRSFFALRDQIPELEN-NEKAPKVVILKKATAYILSVQ   58 (88)
T ss_dssp             HHHHHHHHHTTCGGGTT-CTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHH
Confidence            44589999999997764 479999999999999999885

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=92.69  E-value=0.13  Score=33.93  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=34.8

Q ss_pred             cchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           7 TIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         7 tIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      .|.+++.-|.++||.-.+.--++-|.-||+++-||+.-|-
T Consensus         6 nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq   45 (83)
T 4ath_A            6 NINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ   45 (83)
T ss_dssp             HHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHH
T ss_pred             hHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHH
Confidence            4778899999999998665579999999999999998873

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=92.20  E-value=0.13  Score=34.57  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      |.-+|..|..+||-..+...++.|..||+.|.++++.|-
T Consensus        42 In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq   80 (118)
T 4ati_A           42 INDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ   80 (118)
T ss_dssp             HHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHH
Confidence            667899999999987665568999999999999999884

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=92.08  E-value=0.12  Score=32.42  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=31.4

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      |.-+|..|..+||-   ...++.|..||+.|.++++.|-
T Consensus        21 in~~f~~L~~lvP~---~~~k~~Ka~IL~~Ai~YI~~Lq   56 (82)
T 1am9_A           21 INDKIIELKDLVVG---TEAKLNKSAVLRKAIDYIRFLQ   56 (82)
T ss_dssp             HHHHHHHHHHHHTC---SSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccC---CCCCCCHHHHHHHHHHHHHHHH
Confidence            56789999999985   3579999999999999999874

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=92.06  E-value=0.04  Score=32.86  Aligned_cols=40  Identities=28%  Similarity=0.345  Sum_probs=34.8

Q ss_pred             chhhhhhhhhccCCCCCCC--CCchHHHHHHhHHhHHHHHhC
Q psy4528           8 IDYGFQRLQKLIPRHPGDP--EKLPKEIILKRAADLAEALYS   47 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdp--ErlpKeiiLkRaadl~ealy~   47 (87)
                      |.-+|..|..+||-..++.  .++.|..||+.|.++++.|-.
T Consensus        20 in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~   61 (65)
T 1an4_A           20 INNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ   61 (65)
T ss_dssp             HHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            5678999999999887763  478999999999999999865

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=88.33  E-value=0.25  Score=29.98  Aligned_cols=40  Identities=18%  Similarity=0.215  Sum_probs=32.6

Q ss_pred             cchhhhhhhhhccCCCCCC---CCCchHHHHHHhHHhHHHHHh
Q psy4528           7 TIDYGFQRLQKLIPRHPGD---PEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         7 tIdygfqrl~K~~pr~pGd---pErlpKeiiLkRaadl~ealy   46 (87)
                      .|--+|.-|+.+||--..+   ..++-|--||..|.+|+..|=
T Consensus        16 rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq   58 (63)
T 1a0a_A           16 RLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ   58 (63)
T ss_dssp             HHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHH
Confidence            3667999999999954322   468889999999999999884

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=87.99  E-value=0.59  Score=29.44  Aligned_cols=36  Identities=19%  Similarity=0.442  Sum_probs=31.1

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      |..+|.-|.++||   +-..++-|.-||+.|-++++.|-
T Consensus        23 IN~~i~eL~~LvP---~~~~K~dK~sIL~~aI~yik~Lq   58 (71)
T 4h10_B           23 FNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHK   58 (71)
T ss_dssp             HHHHHHHHHTTSS---SCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC---CCCCCCcHHHHHHHHHHHHHHHH
Confidence            6678999999998   44569999999999999999874

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=83.28  E-value=0.42  Score=29.97  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=36.5

Q ss_pred             cchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhCCCCC
Q psy4528           7 TIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRN   51 (87)
Q Consensus         7 tIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~~p~n   51 (87)
                      .|..+|.-|..+||-..+-..++-|.-||+.|-++++.|-+.|..
T Consensus        23 rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~~~~   67 (73)
T 4h10_A           23 KMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAWLE   67 (73)
T ss_dssp             HHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC---
T ss_pred             HHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcCccc
Confidence            467889999999997544457999999999999999999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	96.15
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	94.08
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	94.06
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	93.7
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	93.51
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	93.08
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	91.74
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	89.25

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0024  Score=37.83  Aligned_cols=37  Identities=30%  Similarity=0.525  Sum_probs=32.9

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      |--+|..|++++|-.+++  ++.|..||..|-++++.|=
T Consensus        27 in~~~~~L~~llP~~~~~--k~sK~~iL~~Ai~YI~~Lq   63 (68)
T d1mdya_          27 VNEAFETLKRSTSSNPNQ--RLPKVEILRNAIRYIEGLQ   63 (68)
T ss_dssp             HHHHHHHHHTTSCSCTTS--CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHHHHHH
Confidence            567999999999987764  8999999999999999884

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.018  Score=34.23  Aligned_cols=37  Identities=27%  Similarity=0.473  Sum_probs=31.5

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      |--+|..|.+++|-.++  .++.|.-||+.|.++++.|-
T Consensus        17 in~~f~~L~~llP~~~~--~k~sK~~iL~~A~~yI~~L~   53 (83)
T d1nkpb_          17 IKDSFHSLRDSVPSLQG--EKASRAQILDKATEYIQYMR   53 (83)
T ss_dssp             HHHHHHHHHTTSGGGTT--SCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCC--CCCCHHHHHHHHHHHHHHHH
Confidence            45689999999996655  48999999999999998774

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.02  Score=34.13  Aligned_cols=36  Identities=31%  Similarity=0.432  Sum_probs=30.9

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      |--+|..|..++|   +...++.|-.||..|.++++.|-
T Consensus        21 in~~~~~L~~llP---~~~~k~~K~~iL~~a~~yI~~L~   56 (80)
T d1am9a_          21 INDKIIELKDLVV---GTEAKLNKSAVLRKAIDYIRFLQ   56 (80)
T ss_dssp             HHHHHHHHHHHHT---CSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC---CCCCCCCHHHHHHHHHHHHHHHH
Confidence            4568999999998   45568999999999999999874

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.032  Score=32.85  Aligned_cols=38  Identities=18%  Similarity=0.322  Sum_probs=31.6

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      |--+|..|.+++|-.+. ..++.|-.||++|.+++..|=
T Consensus        16 in~~f~~L~~llP~~~~-~~k~sK~~iL~~A~~yI~~L~   53 (79)
T d1nlwa_          16 LRLSLEKLKGLVPLGPD-SSRHTTLSLLTKAKLHIKKLE   53 (79)
T ss_dssp             HHHHHHHHHHSSCCCSS-SCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccCCC-CCCCCHHHHHHHHHHHHHHHH
Confidence            45689999999995543 468999999999999998773

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.014  Score=33.53  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=30.1

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      |.=+|+.|.+++|-   ...+..|..||.+|.++++.|=
T Consensus         4 in~~f~~L~~lvP~---~~~K~~Ka~iL~~Ai~YI~~Lq   39 (61)
T d1uklc_           4 INDKIIELKDLVMG---TDAKMHKSGVLRKAIDYIKYLQ   39 (61)
T ss_dssp             HHHHHHHHHHHHSC---SSCCCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCC---CCCcccHHHHHHHHHHHHHHHH
Confidence            45589999999983   3348899999999999999874

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.037  Score=33.16  Aligned_cols=38  Identities=32%  Similarity=0.448  Sum_probs=31.0

Q ss_pred             chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy   46 (87)
                      |-=+|..|.++||-.+. ..++.|..||+.|.++++.|-
T Consensus        21 in~~f~~Lr~llP~~~~-~~k~sK~~iL~~A~~yI~~L~   58 (88)
T d1nkpa_          21 LKRSFFALRDQIPELEN-NEKAPKVVILKKATAYILSVQ   58 (88)
T ss_dssp             HHHHHHHHHTTCGGGTT-CTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCC-CCccCHHHHHHHHHHHHHHHH
Confidence            34479999999985443 368999999999999999874

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.021  Score=33.01  Aligned_cols=39  Identities=28%  Similarity=0.343  Sum_probs=33.0

Q ss_pred             chhhhhhhhhccCCCCCC--CCCchHHHHHHhHHhHHHHHh
Q psy4528           8 IDYGFQRLQKLIPRHPGD--PEKLPKEIILKRAADLAEALY   46 (87)
Q Consensus         8 Idygfqrl~K~~pr~pGd--pErlpKeiiLkRaadl~ealy   46 (87)
                      |-=+|..|.++||--.+.  ..++.|..||+.|.++++.|=
T Consensus        20 in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq   60 (65)
T d1an4a_          20 INNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR   60 (65)
T ss_dssp             HHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            556899999999976544  468999999999999999884

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.25  E-value=0.11  Score=29.65  Aligned_cols=40  Identities=18%  Similarity=0.239  Sum_probs=31.6

Q ss_pred             chhhhhhhhhccCCC---CCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528           8 IDYGFQRLQKLIPRH---PGDPEKLPKEIILKRAADLAEALYS   47 (87)
Q Consensus         8 Idygfqrl~K~~pr~---pGdpErlpKeiiLkRaadl~ealy~   47 (87)
                      |-=+|+.|..++|--   -+-..++.|-.||+.|.++++.|-.
T Consensus        17 in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~   59 (63)
T d1a0aa_          17 LAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQ   59 (63)
T ss_dssp             HHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHH
Confidence            445899999999831   2334688999999999999999853