Psyllid ID: psy4557
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 958 | 2.2.26 [Sep-21-2011] | |||||||
| Q70LM4 | 5085 | Linear gramicidin synthas | N/A | N/A | 0.515 | 0.097 | 0.300 | 3e-54 | |
| Q49WS9 | 246 | Uncharacterized oxidoredu | yes | N/A | 0.252 | 0.983 | 0.42 | 5e-45 | |
| P37693 | 506 | Polyketide synthase HetM | yes | N/A | 0.436 | 0.826 | 0.284 | 4e-43 | |
| Q75BB3 | 1385 | L-aminoadipate-semialdehy | yes | N/A | 0.447 | 0.309 | 0.283 | 2e-39 | |
| Q6FMI5 | 1374 | L-aminoadipate-semialdehy | yes | N/A | 0.453 | 0.315 | 0.282 | 6e-39 | |
| P07702 | 1392 | L-aminoadipate-semialdehy | yes | N/A | 0.449 | 0.309 | 0.286 | 2e-38 | |
| P40976 | 1419 | L-aminoadipate-semialdehy | yes | N/A | 0.506 | 0.341 | 0.261 | 6e-37 | |
| Q5HLD8 | 230 | Uncharacterized oxidoredu | yes | N/A | 0.232 | 0.969 | 0.375 | 7e-35 | |
| Q8CN40 | 230 | Uncharacterized oxidoredu | yes | N/A | 0.232 | 0.969 | 0.375 | 7e-35 | |
| Q92EK7 | 248 | Uncharacterized oxidoredu | yes | N/A | 0.250 | 0.967 | 0.358 | 1e-33 |
| >sp|Q70LM4|LGRD_BREPA Linear gramicidin synthase subunit D OS=Brevibacillus parabrevis GN=lgrD PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 249/525 (47%), Gaps = 31/525 (5%)
Query: 172 HLSILKS-----SGKLNKEELPKLD---SIAQIELDESMFQSQKNIAKIWCKILNLYTLD 223
H IL S +GKL+++ LPK + S A +E + + W +L + T+
Sbjct: 4565 HYMILDSLPKTPNGKLDRKALPKPEYDRSEAGVEYVAPQTPVEIMLHAHWAAVLEMETIG 4624
Query: 224 KDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNETLKLDL 283
+NFFEIGGHSL A I K+ EEL L + ++ LF PT+ MA +E L +
Sbjct: 4625 VHDNFFEIGGHSLLATQLIFKVREELQLEVPLRILFETPTIAGMAKTIEEIIKHGLT-SV 4683
Query: 284 IHEIDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLGIHLLQKFLVDT 343
EID K L + + + + + ++ LLTG TG+LG LL+ L T
Sbjct: 4684 SQEIDA---KGLQDEVALDPAILAEQ-PYEGDPSQFQAALLTGATGFLGAFLLRDLLQMT 4739
Query: 344 KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQDEY 403
++C VR + + L RL + Y + + + R+I V DL+ LGL + ++
Sbjct: 4740 DADIYCLVRASGEEEGLARLRKTLQLYELWDEAQAH--RIIPVIGDLAQPRLGL-SAGQF 4796
Query: 404 VSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPS 463
+L+ +D+I H A VN + PY AL K+NV+ T+ +I + K K H+VST I+
Sbjct: 4797 DALAATVDVIYHNGALVNFVYPYAALKKANVIGTEEIIRLAAAKKTKPVHFVST--IFTF 4854
Query: 464 TSENFQEDYTVADFD---DFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSL 520
SE +E V + D + TSGY QSK V+E++V A Q G+P +I RCG + G
Sbjct: 4855 ASEEGEESVAVREEDMPENSRILTSGYTQSKWVAEHIVNLARQRGIPTAIYRCGRMTGDS 4914
Query: 521 EFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFI 580
E DL I I LG APD+ L+ PVDF +K +V L+ ++ N ++ +
Sbjct: 4915 ETGACQKDDLMWRIAAGIIDLGKAPDMSGDLDMMPVDFASKGIVHLSMTEHSVNSNFHLL 4974
Query: 581 NTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNK--------RELSEPLIQILRNKGKE 632
N N L++ + G+ ++ V ++W + + + PL + +
Sbjct: 4975 NPNATDYDDLIAAIENKGFELERVTMDEWIEAVQEDAKDKGMDANSAAPLGNLFSDGHSS 5034
Query: 633 YLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLL 677
+V Y T LL+ D PE ++ + LD + L
Sbjct: 5035 RGSV--VYVGNKTTRLLRQADIECPEIDEEVFAKVLDYFARTGQL 5077
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Activates the 13th to the 16th (Trp, D-Leu, Trp and Gly) amino acids in linear gramicidin and catalyzes the formation of the peptide bond between them. This enzyme is also responsible for the epimerization of the 14th (D-Leu) amino acid. It also catalyzes the NAD(P)H-dependent reduction of the C-terminal glycine residue of the N-formylated 16-mer peptide, that binds to the peptidyl carrier domain of the terminal module of this protein, to form a peptidyl-aldehyde intermediate that is released from the enzyme complex. Brevibacillus parabrevis (taxid: 54914) EC: 1EC: .EC: -EC: .EC: -EC: .EC: - |
| >sp|Q49WS9|Y1627_STAS1 Uncharacterized oxidoreductase SSP1627 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1627 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 157/250 (62%), Gaps = 8/250 (3%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
N + +KV+ +TG+SSGIGE+ V L GAK+V ARR+DRLE ++ + + S+ +KK
Sbjct: 2 NNVKDKVVVITGASSGIGEETVNLLSENGAKLVLGARRLDRLEKIQQKVGH--DSVSIKK 59
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DVT ++V ++ + G ID+L+NNAG+M + +EK K +EWN MI+VNIKGVL+
Sbjct: 60 TDVTKPDEVNALIETAYNDFGRIDVLINNAGLMPQSFLEKNKQDEWNQMIDVNIKGVLYG 119
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQE--VSDRNI 889
IG +LP M ++ GHI+N++S AG F G AVY GTKY + I+ LRQE + NI
Sbjct: 120 IGAVLPYM-RKQKSGHIINLASVAGHVVFPGSAVYCGTKYAVRAITEGLRQEEAIVGSNI 178
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP-VLTTKEISQSIIFALLQPSHSAVNS 948
+ T + G V TEL H +D+D+ K DI + + I+++I +A+ +P S+VN
Sbjct: 179 RTTILSPGAVSTELTDHISDKDM--KQDIDELYKNAIKPDAIARAINYAINEPEESSVNE 236
Query: 949 ILIEPPLASI 958
+I P S+
Sbjct: 237 FIIRPSSQSL 246
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Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) (taxid: 342451) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|P37693|HETM_NOSS1 Polyketide synthase HetM OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=hetM PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 224/457 (49%), Gaps = 39/457 (8%)
Query: 222 LDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLE--------- 272
+D N G S A + +SK+ + L S L+ +PT++ ++ L
Sbjct: 31 IDATVNLESYGLDSAQAMVLVSKLEQLLGFQPSPLLLWHYPTIESLSERLAEELEEQSEE 90
Query: 273 --------NKSNETLKLDLIHEIDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLL 324
N SN T LDL E+ LD ++ ++ ++ + V L
Sbjct: 91 QNTDSATANHSNGTPVLDLQAEV------VLDPVIHPG-----GAIPVDFPVTQPKKVFL 139
Query: 325 TGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLI 384
TG TG+LG L+++ L T+ ++C VR + +++ + Y ++ Y R+I
Sbjct: 140 TGGTGFLGAFLIRELLQQTQADVYCLVRAADAQAGKAKIQTNLEGY--AIWQEEYESRII 197
Query: 385 LVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFS 444
V DL+ +LGL + ++ +L+ EID I H+ A +N + PY+AL +NVL T+ ++ +
Sbjct: 198 PVVGDLAEPLLGLSST-QFQALAAEIDTIYHSGALLNYVFPYSALKAANVLGTQEVLRLA 256
Query: 445 FLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM 504
K+K HYVS+ +++ S + DF + GY Q+K V+E LV AG
Sbjct: 257 CQIKVKPVHYVSSVAVFESPVYAGKVVKESDDFSHWEGIFLGYSQTKWVAEKLVKIAGDR 316
Query: 505 GLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLV 564
GLPV+I R IGG E N D ++K ++G PD+++ L+ +PVD+++K++V
Sbjct: 317 GLPVTIHRPPLIGGDSETGIGNTHDFINLMVKGCLQMGCFPDVEYMLDMSPVDYVSKAIV 376
Query: 565 QLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKL--NKRELSEPL 622
L+ + K ++ + P+ + LV + ++GY IKT+PYE+W +L N + PL
Sbjct: 377 HLSMQKESLGKAFHLQHPEPVSLSVLVDWVRSFGYEIKTLPYEEWQAELINNATSVDNPL 436
Query: 623 IQ----ILRNKGKEYLTVNNSYCQRNTLALLKSCDET 655
+L E LT+ + Y + + SC +T
Sbjct: 437 YTLRPFLLERWSDEQLTIPDLYLKAKRPHI--SCQDT 471
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q75BB3|LYS2_ASHGO L-aminoadipate-semialdehyde dehydrogenase large subunit OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=LYS2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 135/476 (28%), Positives = 229/476 (48%), Gaps = 47/476 (9%)
Query: 176 LKSSGKLNKEEL-----PKLDSIAQIELDESMFQS-----QKNIAKIWCKILNLYTL--D 223
L +GK++K +L +LD ++ E++ S ++ I KIW +L
Sbjct: 809 LNPNGKIDKNKLQFPEPTELDRASEHFASETLGLSSFSPLEQEIRKIWLDLLPTRPAITS 868
Query: 224 KDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMA--------ALLENKS 275
DE+FF++GG S+ A + L+++L++ +F +PTV+E+A + ++KS
Sbjct: 869 SDESFFDLGGTSILATRMAIVLRNRLNISLALSTIFRYPTVKELAKEISRVRGTISDDKS 928
Query: 276 NETLKLDLIHEIDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLGIHL 335
+ + + + S L R+ ++ Y V LTGVTG+LG H+
Sbjct: 929 SNSGTTEYYADAKHVSEAELASKYESRLSLLPSGA---TSAPVY--VFLTGVTGFLGCHI 983
Query: 336 LQKFLVDTK----CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLS 391
L L ++ T++ VR + + LQR++ + Y L N Y R+ +V +L+
Sbjct: 984 LADLLNRSRKPYDITVYAHVRASDESSALQRIKSVCTAY--GLWKNAYAPRIKVVLGNLA 1041
Query: 392 LEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKS 451
+ GL + + L ID+IIH AA V+ + PY+ L ++NVL+T N++ + K K
Sbjct: 1042 EKQFGLPKK-AWHDLQEGIDVIIHNAALVHWVYPYSKLREANVLSTVNVLNLAAAGKAKY 1100
Query: 452 FHYVSTDSI-----YPSTSENFQED--YTVADFDDFMTTT----SGYGQSKIVSEYLVLN 500
F +VS+ S Y S E V + DD M + GYGQSK +E+++
Sbjct: 1101 FTFVSSTSALDTKHYLELSNAAIESGGSGVPEDDDLMGGSLGLKGGYGQSKWAAEFIIKR 1160
Query: 501 AGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLT 560
AG+ GL I+R G + GS N D L L+ +LG PDI+ + PVD++
Sbjct: 1161 AGERGLRGCILRPGYVTGSPSTGASNADDFLLRFLRGCVQLGKIPDIEGTVNMVPVDYVA 1220
Query: 561 K--SLVQLTTNVNNANKIYNFINTNP-IHIKTLVSVLNTYGYNIKTVPYEKWFHKL 613
+ + +++ N + N +N P I + + L YGY + +VPY++W L
Sbjct: 1221 RLATAASFSSSGNTHMMVVN-VNAKPRISFRDYLLALKEYGYQVTSVPYDEWSKAL 1275
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Catalyzes the activation of alpha-aminoadipate by ATP-dependent adenylation and the reduction of activated alpha-aminoadipate by NADPH. Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q6FMI5|LYS2_CANGA L-aminoadipate-semialdehyde dehydrogenase large subunit OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=LYS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 138/488 (28%), Positives = 237/488 (48%), Gaps = 54/488 (11%)
Query: 176 LKSSGKLNKEELPKLDSIAQIEL----------DESMFQSQKNIAKIW--CKILNLYTLD 223
L +GK++K +L + ++ Q+EL D Q ++ I +W C ++
Sbjct: 795 LNPNGKVDKPKL-QFPTVKQLELVAKNSSIDINDSEFNQQEREIRDLWLECLPTKPTSIS 853
Query: 224 KDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL------ENKSNE 277
+++FF++GGHS+ A I + ++L++ L + +F +PT++ AA + + E
Sbjct: 854 PEDSFFDLGGHSILATKMIFTVKKQLNVELPLGTIFKYPTIKAFAAEVSRLKSTDKIEEE 913
Query: 278 TLKLDLIHEIDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYG----NVLLTGVTGYLGI 333
T L + D S ++ + + + L S G N+ +TGVTG+LG
Sbjct: 914 TTALTADYASDAASL------IDTLPKSYPAARALGSPSEMAGPTTVNIFVTGVTGFLGS 967
Query: 334 HLLQKFLVDT----KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSD 389
+L L T +F VR + L R+ Y + Y + L +V D
Sbjct: 968 FILSDILNRTVTGVNFKIFAHVRAADETSGLDRIRKAGTVYGTWKE--EYANSLQVVIGD 1025
Query: 390 LSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKI 449
LS + GL + D++ LS ID+IIH A V+ + PY+ L +NV++T N++ + K
Sbjct: 1026 LSKKNFGLTD-DKWSHLSETIDIIIHNGALVHWVYPYSKLRNANVVSTINIMNLASEGKP 1084
Query: 450 KSFHYVSTDSI-----YPSTSENFQED--YTVADFDDFMTT----TSGYGQSKIVSEYLV 498
K F++VS+ S+ Y S+ Q+ + + DD M + TSGYGQSK +E+++
Sbjct: 1085 KLFNFVSSTSVLDTNHYFELSDKLQQSGKEGIPESDDLMGSSLGLTSGYGQSKWAAEHII 1144
Query: 499 LNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDF 558
AG+ GL SI+R G + G+ + N D L LK+ +LG PDI+ + PVD
Sbjct: 1145 RAAGKRGLRGSIIRPGYVTGASYNGSSNTDDFLLRFLKSAVQLGKIPDINNTVNMVPVDQ 1204
Query: 559 LTKSLVQLTTNVNNANKI-YNFINTNP-IHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKR 616
+ + +V + N + + +N +P I K + L YGY+++ YE+W K+
Sbjct: 1205 VARVVVAASINPPCGDDLCVVHVNAHPRIIFKDYLYELKNYGYDVEIENYEQW-----KK 1259
Query: 617 ELSEPLIQ 624
L E +I+
Sbjct: 1260 TLEEAVIE 1267
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Catalyzes the activation of alpha-aminoadipate by ATP-dependent adenylation and the reduction of activated alpha-aminoadipate by NADPH. Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P07702|LYS2_YEAST L-aminoadipate-semialdehyde dehydrogenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LYS2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/468 (28%), Positives = 234/468 (50%), Gaps = 37/468 (7%)
Query: 176 LKSSGKLNKEEL----PK-LDSIAQ---IELDESMFQS-QKNIAKIWCKIL--NLYTLDK 224
L +GK++K +L PK L+ +A+ E D+S F + ++ + +W IL ++
Sbjct: 810 LNPNGKVDKPKLQFPTPKQLNLVAENTVSETDDSQFTNVEREVRDLWLSILPTKPASVSP 869
Query: 225 DENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLEN--KSNETLKLD 282
D++FF++GGHS+ A I + ++L ++L + +F +PT++ AA ++ S + + +
Sbjct: 870 DDSFFDLGGHSILATKMIFTLKKKLQVDLPLGTIFKYPTIKAFAAEIDRIKSSGGSSQGE 929
Query: 283 LIHEIDVN---SYKSLDENLNVRVQCFWKSVQLNSNKLKYG-NVLLTGVTGYLGIHLLQK 338
++ + N K L E L V+ NS + K NV +TGVTG+LG ++L
Sbjct: 930 VVENVTANYAEDAKKLVETLPSSYPSREYFVEPNSAEGKTTINVFVTGVTGFLGSYILAD 989
Query: 339 FLVDT----KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEM 394
L + +F VR + RL+ + Y + + + +V DLS
Sbjct: 990 LLGRSPKNYSFKVFAHVRAKDEEAAFARLQKAGITYGTWNE--KFASNIKVVLGDLSKSQ 1047
Query: 395 LGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHY 454
GL ++ +++ L+ +D+IIH A V+ + PY L NV++T N++ + + K K F +
Sbjct: 1048 FGLSDE-KWMDLANTVDIIIHNGALVHWVYPYAKLRDPNVISTINVMSLAAVGKPKFFDF 1106
Query: 455 VSTDSI-----YPSTSENF--QEDYTVADFDDFMTT----TSGYGQSKIVSEYLVLNAGQ 503
VS+ S Y + S+ + + + DD M + T GYGQSK +EY++ AG+
Sbjct: 1107 VSSTSTLDTEYYFNLSDKLVSEGKPGILESDDLMNSASGLTGGYGQSKWAAEYIIRRAGE 1166
Query: 504 MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSL 563
GL IVR G + G+ + N D L LK +LG PDI+ + PVD + + +
Sbjct: 1167 RGLRGCIVRPGYVTGASANGSSNTDDFLLRFLKGSVQLGKIPDIENSVNMVPVDHVARVV 1226
Query: 564 VQLTTNVNNANKI-YNFINTNP-IHIKTLVSVLNTYGYNIKTVPYEKW 609
V + N N++ + +P I K + L+ YGY+++ Y KW
Sbjct: 1227 VATSLNPPKENELAVAQVTGHPRILFKDYLYTLHDYGYDVEIESYSKW 1274
|
Catalyzes the activation of alpha-aminoadipate by ATP-dependent adenylation and the reduction of activated alpha-aminoadipate by NADPH. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P40976|LYS2_SCHPO L-aminoadipate-semialdehyde dehydrogenase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lys1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 139/532 (26%), Positives = 258/532 (48%), Gaps = 47/532 (8%)
Query: 130 VPKVKLENDFLSKMISEN------EKFHNHVPIAEEYRKNLVQNFE------SLHLSILK 177
VP+ ++DF S SE+ +K+ + EY K + ++ LH L
Sbjct: 789 VPQGLNKDDFDSATESEDIVVNGLKKYRKLIHDIREYLKTKLPSYAIPSVIVPLHKMPLN 848
Query: 178 SSGKLNKEELPKLD---------SIAQIELDESMFQSQKNIAKIWCKILNLYT-LDKDEN 227
+GK++K LP D S ++ +DE++ ++++I IW +I+ T ++K +
Sbjct: 849 PNGKIDKPALPFPDTSQLAAASRSHSKHGVDETLTATERDIRDIWLRIIPHATDVNKKAS 908
Query: 228 FFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLEN-KSNETLKL----- 281
FF+IGGHS+ A I ++ ++ ++N+ + +F+ PT++ +A +E KS E + +
Sbjct: 909 FFDIGGHSILATRLIFELRKKFAVNVPLGLVFSEPTIEGLAKEIERMKSGEMISVMDIGK 968
Query: 282 DLIHEIDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLGIHLLQKFLV 341
+ E ++ K + +++ + F S L ++ K V LTG GYLG+ +L+ +
Sbjct: 969 EETREPEIEYGKDALDLVDLIPKEFPTSKDLGIDEPK--TVFLTGANGYLGVFILRDLMT 1026
Query: 342 -DTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400
+ + VR + + L+RL+D Y + + ++ ++ +V DL+LE G++ +
Sbjct: 1027 RSSNLKVIALVRASSEEHGLKRLKDSCTAYGVWDE--SWAQKISVVNGDLALENWGIEER 1084
Query: 401 DEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVS-TDS 459
++ L+ +D +IH A V+ + PY+ L NV+ T ++ L K KS +VS T +
Sbjct: 1085 -KWNKLTEVVDYVIHNGALVHWVYPYSKLRGPNVMGTITALKLCSLGKGKSLSFVSSTST 1143
Query: 460 IYPSTSENFQEDYT------VADFDDFMTTT----SGYGQSKIVSEYLVLNAGQMGLPVS 509
+ N + T + + D ++ +GYGQSK VSEYLV AG GL
Sbjct: 1144 VDTEYYVNLSNEITSKGGNGIPESDPLQGSSKDLHTGYGQSKWVSEYLVRQAGLRGLRGV 1203
Query: 510 IVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTN 569
+VR G I G + N D + ++K LG P+I+ + P D + + +V +
Sbjct: 1204 VVRPGYILGDSKSGAINTDDFLVRMVKGCIELGLYPNINNTVNMVPADHVAR-VVTASAF 1262
Query: 570 VNNANKIYNFINTNP-IHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSE 620
I + ++P + + L+T+G+N K Y W L + ++E
Sbjct: 1263 HPEQGVIVAHVTSHPRLRFNQFLGTLSTFGFNTKLSEYVNWRIALERFVINE 1314
|
Catalyzes the activation of alpha-aminoadipate by ATP-dependent adenylation and the reduction of activated alpha-aminoadipate by NADPH. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q5HLD8|Y2049_STAEQ Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 14/237 (5%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
KV VTG+SSGIGE + K L GA +V V R RL + L N P ++ DVT+
Sbjct: 7 KVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQL-NTPAKVV--SADVTV 63
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
++++ +++ V+ GHIDI+VN+AG + + Y +E+W+ MI+VNIKG LH + L
Sbjct: 64 KSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATL 123
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
P +L + GHI+N++S +G P AVY TK I I+ +L +E++ +KVT I
Sbjct: 124 PYLL-KQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISP 182
Query: 897 GDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
G V T ++ TD K L + I+ ++++AL QPSH VN + I P
Sbjct: 183 GMVDTP-MTEGTDFGERKK---------LEAQNIADAVVYALTQPSHVNVNEVTIRP 229
|
Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q8CN40|Y2036_STAES Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 14/237 (5%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
KV VTG+SSGIGE + K L GA +V V R RL + L N P ++ DVT+
Sbjct: 7 KVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQL-NTPAKVV--SADVTV 63
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
++++ +++ V+ GHIDI+VN+AG + + Y +E+W+ MI+VNIKG LH + L
Sbjct: 64 KSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATL 123
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
P +L + GHI+N++S +G P AVY TK I I+ +L +E++ +KVT I
Sbjct: 124 PYLL-KQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISP 182
Query: 897 GDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
G V T ++ TD K L + I+ ++++AL QPSH VN + I P
Sbjct: 183 GMVDTP-MTEGTDFGERKK---------LEAQNIADAVVYALTQPSHVNVNEVTIRP 229
|
Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q92EK7|Y452_LISIN Uncharacterized oxidoreductase Lin0452 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=lin0452 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 87/243 (35%), Positives = 133/243 (54%), Gaps = 3/243 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
T+ NKVI +TG+SSGIGE L GAK+V ARR+++LE + +++ + G I K
Sbjct: 2 TIKNKVIIITGASSGIGEATAILLAEKGAKLVLAARRVEKLEKIVQTIKASSGEAIFAKT 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DVT D KK+V + G +D + NAG+M + + K +EW MI++NIKGVL+ I
Sbjct: 62 DVTKREDNKKLVELAIERYGKVDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNGI 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR--NIK 890
+LPS + +++ GHI+ SS AG++ + G AVY TK+ + + LR E + NI+
Sbjct: 122 AAVLPSFI-AQKSGHIIATSSVAGLKAYPGGAVYGATKWAVRDLMEVLRMESAQEGTNIR 180
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950
I + TELL TD++ +T I+ + +A+ QP VN
Sbjct: 181 TATIYPAAINTELLETITDKETEQGMTNLYKQYGVTPDRIASIVAYAIDQPEDINVNEFT 240
Query: 951 IEP 953
+ P
Sbjct: 241 VGP 243
|
Listeria innocua serovar 6a (strain CLIP 11262) (taxid: 272626) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 958 | ||||||
| 328714539 | 1278 | PREDICTED: linear gramicidin synthase su | 0.793 | 0.594 | 0.378 | 1e-153 | |
| 405967002 | 1378 | Linear gramicidin synthetase subunit D [ | 0.786 | 0.546 | 0.360 | 1e-150 | |
| 393911071 | 1255 | oxidoreductase [Loa loa] | 0.783 | 0.598 | 0.370 | 1e-139 | |
| 402592419 | 1031 | short chain dehydrogenase/reductase SDR | 0.757 | 0.704 | 0.354 | 1e-134 | |
| 443688298 | 1268 | hypothetical protein CAPTEDRAFT_168750 [ | 0.781 | 0.590 | 0.349 | 1e-134 | |
| 196005111 | 1212 | hypothetical protein TRIADDRAFT_25485 [T | 0.799 | 0.632 | 0.339 | 1e-123 | |
| 312084410 | 641 | oxidoreductase [Loa loa] | 0.656 | 0.981 | 0.377 | 1e-116 | |
| 212531055 | 1279 | NRPS-like enzyme, putative [Talaromyces | 0.818 | 0.612 | 0.317 | 1e-107 | |
| 242771947 | 1281 | NRPS-like enzyme, putative [Talaromyces | 0.806 | 0.603 | 0.313 | 1e-107 | |
| 260827070 | 1329 | hypothetical protein BRAFLDRAFT_128033 [ | 0.555 | 0.400 | 0.379 | 1e-106 |
| >gi|328714539|ref|XP_001942617.2| PREDICTED: linear gramicidin synthase subunit D-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/805 (37%), Positives = 492/805 (61%), Gaps = 45/805 (5%)
Query: 172 HLSILKSSGKLNKEELPK--LDSIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENFF 229
L ++++SGKL+K LPK LD I ++ Q++K + I+CK L Y+LD ++NFF
Sbjct: 501 RLPVVEASGKLDKSVLPKIILDEANGILVENFKTQTEKTVGTIFCKALKTYSLDVEDNFF 560
Query: 230 EIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL-ENKSNETLKLDLIHEID 288
E GGHSL AA I ++N + DLF +P V+ MA+LL +N S+ + +++L+ E++
Sbjct: 561 ENGGHSLLAASVIGELNCTFGTQFRVHDLFLNPNVKAMASLLDQNISSASHEINLMEELN 620
Query: 289 --VNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLGIHLLQKFLVDTKCT 346
VN + D+ ++ FW++V LN NK GNVLLTG TG++G +LQK L+ T+
Sbjct: 621 NLVNDFTISDK----MIRWFWRAVNLNKNKFTNGNVLLTGATGFVGAFILQK-LLQTQVN 675
Query: 347 LFCPVRETPNKTLLQRLEDIMLKYHMSLDLNN--YTDRLILVKSDLSLEMLGLKNQDEYV 404
+FC +R++ L++LE M +Y++S+ ++ + ++I++K D+SL G+ + D+Y
Sbjct: 676 IFCLIRDSAEYKPLEKLEQTMKRYNLSVGSSSGPFYSKVIVLKGDVSLVHFGMSD-DDYE 734
Query: 405 SLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPST 464
+L ++ID +IHAAA VNL+ P+ ALY +NV+ TKN+I+F KIK H++S+ +++P
Sbjct: 735 ALCFDIDYVIHAAAQVNLLYPFGALYTNNVIGTKNIIQFCTDGKIKPLHHISSSAVFPQG 794
Query: 465 SENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKN 524
++ E+ ++ + +GYGQ+K ++E L+LNA + GLP SI RCGNI GS +
Sbjct: 795 LKDISENDNPENWAPLLK--NGYGQTKWLAEQLILNAIKKGLPASIFRCGNISGSRLVSS 852
Query: 525 WNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNAN-KIYNFINTN 583
WNL D L+I++ + PDI W +E TPVDF+ ++V+LT N+N+++ KIY+ +N +
Sbjct: 853 WNLADFTLFIIQGVLYTNAYPDISWEIELTPVDFVANTIVELTQNINDSSGKIYHLVN-D 911
Query: 584 PIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQILRNKGKEYLTVNNSYCQR 643
++ K L V+ GY+++ V Y+KW + K + +P + L + NN + +
Sbjct: 912 TLNSKHLWEVMKDVGYSLECVSYKKWTEIIEKNSILQPQLASLSYLLNSTVEDNNYFQNQ 971
Query: 644 NTL------ALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVPLENNNSTEYTDTNKQG 697
+T+ + L S + YP + + + L L + NL+P + + + +
Sbjct: 972 STVKKINVESYLASANLKYPNLDSNECHRILKTLADLNLIPQMAITKGSEKSLLTQSLP- 1030
Query: 698 ISISNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLK 757
L +KV+F+TG+SSGIG ++ K L GA V+ RRI RL LK
Sbjct: 1031 ----------------LKSKVVFITGASSGIGYEITKSLALAGAIVIPTGRRIHRLMELK 1074
Query: 758 TSLQNA----PGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYK 813
+ + ++ ++DVT +V+ VVR V +G IDI++ NAGVM++T +K K
Sbjct: 1075 NKIYSLGVTNKNTVFPYEMDVTNPINVRTVVRNVEESIGPIDIMIINAGVMFYTTFDKCK 1134
Query: 814 LEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873
L+EW+ M+ VN G+L+C+G +LP+M R GH++NI+SNAG R F GL VY+GTK+F+
Sbjct: 1135 LDEWDEMVRVNCNGMLNCLGAVLPTMTL-RNSGHVVNITSNAGRRSFPGLGVYSGTKFFM 1193
Query: 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQS 933
EGI+ ALR E+++ N+KVTCIQ GDVKTELL ++D + +++YD S +L I+++
Sbjct: 1194 EGIASALRTEMTEHNVKVTCIQPGDVKTELLHRTSDYEALNRYDCSSNNEILEPSNIAEA 1253
Query: 934 IIFALLQPSHSAVNSILIEPPLASI 958
++FA+ QP AVN ILIEP + I
Sbjct: 1254 VLFAVKQPLFCAVNEILIEPKMLPI 1278
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|405967002|gb|EKC32217.1| Linear gramicidin synthetase subunit D [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/815 (36%), Positives = 488/815 (59%), Gaps = 62/815 (7%)
Query: 173 LSILKSSGKLNKEELPKLDSIAQIELDESMF---QSQKNIAKIWCKILNLYTLDKDENFF 229
+ I++++GKL+K LP + ++ + D + +++K++A +W K+L + +D +E+FF
Sbjct: 597 IPIVQATGKLDKNALPPFEKESEGDADSGLLPSTETEKSVAAMWTKVLKIRHVDTEESFF 656
Query: 230 EIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNETLKL------DL 283
++GGHSL A ++ + E+ +++++KDLF PT+ ++ L+++K N++ + D+
Sbjct: 657 DLGGHSLLATELLNHIREKFDIDIAVKDLFLFPTISSISKLIDSKLNKSEDVNSPQIQDV 716
Query: 284 IHEIDVNSYKSLDENLNVRVQCFWKSVQL-NSNKLKYGNVLLTGVTGYLGIHLLQKFLVD 342
E +V + + N++++++ FW+ L N ++ + VLLTG TG+LG LL++ L+
Sbjct: 717 NLENEVQVHSQVKVNIDMQLRAFWRISNLDNKSRFRKARVLLTGATGFLGAFLLKELLLQ 776
Query: 343 TKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDR-----------LILVKSDLS 391
TKC++ C VRE P + QRLE+ + ++ + + + T+ + +V+ +++
Sbjct: 777 TKCSVTCLVREVPGLSGQQRLENTLKQFGILASIASPTEEQTALAKLFQSNVHVVQGEVA 836
Query: 392 LEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKS 451
L LG+ N D+Y L + D IIHAAA VNL+ PY+AL+ +NV T N+++F+ KIK
Sbjct: 837 LVNLGM-NDDDYNYLCTDTDFIIHAAAAVNLVYPYSALHGANVRGTANVVQFACTGKIKP 895
Query: 452 FHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIV 511
HY+STD+++P+ +N +E+ ++D +D +T GY QSK V+E ++ +A + G+P +I
Sbjct: 896 IHYISTDAVFPNGMQNCEEEADISDLNDKLT--DGYSQSKWVAEQIITSARKRGIPAAIY 953
Query: 512 RCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN 571
R GN+ G +WN D L IL+A LG AP +DW +E TPVDF + +V++T N++
Sbjct: 954 RLGNMSGDRVSAHWNPQDFTLMILQACVGLGLAPIVDWEMEMTPVDFAAEFIVRMTYNLS 1013
Query: 572 -NANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRE-----LSEPLIQI 625
+ K ++ +N P+ + + +N +GY I+ + ++ W ++ K + + + L +I
Sbjct: 1014 LSLGKTFHVVNDKPLQSRWVFEWMNAHGYPIQLISFKDWKERVLKEDAITGKVHKNLQRI 1073
Query: 626 LRNKGKE--YLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVPLE 683
+ + E + + ++Y N LKS +P T+ + + L ++ PL
Sbjct: 1074 VESYASESDFFSKLSTYKTDNFQRALKSLQMEFPYTDSAMLSHYFLQLTRQKII--TPLA 1131
Query: 684 NNNSTEYTDTNKQGISISNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKV 743
+ + V G L+ KV VTG+SSGIGE + K L + GAKV
Sbjct: 1132 SKTT---------------------VRGKRLSGKVTIVTGASSGIGEAIAKGLASEGAKV 1170
Query: 744 VAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGV 803
ARRI+RLE+LK ++ G + V I+ DVK++VR + LG IDILVNNAGV
Sbjct: 1171 ALAARRIERLEDLKKQIEGEGG------IAVCIQTDVKELVRHTESVLGPIDILVNNAGV 1224
Query: 804 MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863
MY+T+M+ K ++W I++N KG+ +CIG +L ML R GHI+N+SS+AG + F GL
Sbjct: 1225 MYYTMMKNLKEDQWERQIDLNCKGITNCIGGVLDGML-KRNSGHIVNLSSDAGRKGFPGL 1283
Query: 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
AVY+GTK+++EG+S ALRQEVS I+VTCIQ GDVKTELLSH+TD + YD S
Sbjct: 1284 AVYSGTKFYVEGLSQALRQEVSGEGIRVTCIQPGDVKTELLSHTTDTEAKAAYDGSSNCK 1343
Query: 924 VLTTKEISQSIIFALLQPSHSAVNSILIEPPLASI 958
+L +I+ ++I+A QP + VN ILIEP A +
Sbjct: 1344 ILEPSDIANAVIYATTQPDYVGVNEILIEPREAPV 1378
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|393911071|gb|EJD76153.1| oxidoreductase [Loa loa] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 298/804 (37%), Positives = 476/804 (59%), Gaps = 53/804 (6%)
Query: 173 LSILKSSGKLNKEELPKLD----SIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENF 228
L ++ +S K++K+ LP +D ++ L ++ +++ +AK+W ++L+ +D ENF
Sbjct: 487 LPVVPASSKVDKKALPPVDQRNDAVEASALPKT--ATEERLAKLWTEVLSRTAIDIQENF 544
Query: 229 FEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENK--SNETLKLDLIHE 286
F++GGHSLTAA + K+ EE + LS+ +LFA PTV +A +++K S+ ++DL H+
Sbjct: 545 FDLGGHSLTAARLLHKIQEEFGVQLSMHELFATPTVSSLARRIDHKDDSDNLEQVDLAHQ 604
Query: 287 IDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLGIHLLQKFLVDTKCT 346
+ ++ +K D +++ ++ FW+S L+ + VLLTGVTG++G H+L K L+ T+
Sbjct: 605 VSIHDFK--DNVMDLHLRAFWRSTDLD-HSFSRDIVLLTGVTGFIGSHILVKLLLTTEMR 661
Query: 347 LFCPVRETPNKTLLQRLEDIMLKYHMSLDLNN--YTDRLILVKSDLSLEMLGLKNQDEYV 404
+ C +RE+ T RL D + K M + N R+ ++ D++L LGL +++EY+
Sbjct: 662 VICLIRESAGVTTQFRLIDSIEKIGMMTNTLNDLIKSRVKIISGDVALIRLGL-SEEEYL 720
Query: 405 SLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPST 464
L+YE+D +IHAAA+VNLI PY AL+ NVL T+N+++F NK+K +Y+ST++I PS
Sbjct: 721 FLTYEVDTVIHAAAYVNLIFPYQALHGINVLGTRNILDFCHQNKVKPLYYLSTNAIVPSN 780
Query: 465 SENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKN 524
++ ED D + +GY Q+K V+E LVLN+ GLP I R GN S+
Sbjct: 781 LKDVDEDIINDDVQGKL--LNGYAQTKWVAERLVLNSQIRGLPTVIFRLGNQAASMSTGV 838
Query: 525 WNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNAN--KIYNFINT 582
WN D ++ + APD+D+ +EFTPVDF + + Q+ T A+ KI++ N
Sbjct: 839 WNKQDFIYLLIFCTIQTKLAPDLDFVVEFTPVDFTSSFITQILTKSFRASMGKIFHLTNN 898
Query: 583 NPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSE--PLIQILRNKGKEYLTVNNSY 640
N + +V+ +N +G ++ +P ++W ++ RE +E L ++L++K + +++
Sbjct: 899 NAPTWRQIVNWINDFGIPMRLIPMQQWVQLISTREGAECQQLQKLLQSKEDTLFSTYSTF 958
Query: 641 CQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVPLENNNSTEYTDTNKQGISI 700
+ NT +LK TYP +L + N
Sbjct: 959 KRTNTEKVLKDMGGTYPVVTKSLFTHWLRLMAQKNF------------------------ 994
Query: 701 SNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTS 759
A + FG T KV VTG+S+GIGE +V++L +G KVV ARR +L L +
Sbjct: 995 -TAIPTSTPFGKTTVGKVCIVTGASTGIGEAIVRELALIGYMKVVFCARRRTKLMELFSK 1053
Query: 760 LQNAPG----SIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLE 815
L+ A G +++ + D+T +DV+ VV + G ID+LVNNAG MY+ +M+ +
Sbjct: 1054 LE-AEGCMSSNLLPVQCDITQMSDVQFVVSRAVETFGTIDVLVNNAGCMYYEMMKNGPTK 1112
Query: 816 EWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875
EWN I+VN +G ++ IG +LP M+ + GHI+NI+S+AG R FAGLAVY+GTK+FIEG
Sbjct: 1113 EWNLQIDVNCRGTMNFIGAVLPHMIKAGS-GHIVNITSDAGKRGFAGLAVYSGTKFFIEG 1171
Query: 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAV-PVLTTKEISQSI 934
+S ALR E+ + I+VT +Q GDV+TEL SHS D++ DKYDISKA P+L + +I++++
Sbjct: 1172 MSQALRLEMVEYGIRVTNVQPGDVETELGSHSIDKEACDKYDISKAGHPILNSPDIARAV 1231
Query: 935 IFALLQPSHSAVNSILIEPPLASI 958
++A+ QPS AVN ILIEP I
Sbjct: 1232 LYAVNQPSAVAVNEILIEPQATPI 1255
|
Source: Loa loa Species: Loa loa Genus: Loa Family: Onchocercidae Order: Spirurida Class: Chromadorea Phylum: Nematoda Superkingdom: Eukaryota |
| >gi|402592419|gb|EJW86348.1| short chain dehydrogenase/reductase SDR [Wuchereria bancrofti] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 286/807 (35%), Positives = 471/807 (58%), Gaps = 81/807 (10%)
Query: 173 LSILKSSGKLNKEELPKLD----SIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENF 228
L ++ +S K++K+ LP +D ++ L ++ +++ +AKIW ++L+ +D E+F
Sbjct: 285 LPVVPASSKVDKKALPPVDQQKDAVEASALPKT--ATEERLAKIWAEVLSRTAVDIQESF 342
Query: 229 FEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENK--SNETLKLDLIHE 286
F++GGHSL AA + K+ EE + L++++LFA PTV +A +++K S+ +DL H+
Sbjct: 343 FDLGGHSLMAARLLHKIEEEFGIQLNMRELFATPTVSSLARRIDHKDDSDNLEHVDLAHQ 402
Query: 287 IDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLGIHLLQKFLVDTKCT 346
++++ +K D +++ ++ FW+S ++ + VLLTGVTG++G H+L K L+ T+
Sbjct: 403 VNIHDFK--DNVMDLHLRAFWRSTDMDYS-FSRDIVLLTGVTGFIGSHILVKLLLTTEMR 459
Query: 347 LFCPVRETPNKTLLQRLEDIMLKYHMSLDLNN--YTDRLILVKSDLSLEMLGLKNQDEYV 404
+ C +RE+ T RL D + K M + N R+ ++ D++L LGL +++EY+
Sbjct: 460 VICLIRESAGVTTQSRLIDSIEKMGMMTNTLNDLIKSRVKIISGDVALVRLGL-SEEEYL 518
Query: 405 SLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPST 464
L+YE+D++IHAAA+VNLI PY AL+ NVL T+N+++F NK+K +Y+STD++ PS
Sbjct: 519 FLTYEVDIVIHAAAYVNLIFPYQALHGINVLGTRNILDFCHQNKVKPLYYLSTDAVIPSN 578
Query: 465 SENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKN 524
++ ED + D + +GY Q+K V+E LV+N+ GLP I R GN S+
Sbjct: 579 LKDVDEDISNDDVQGKL--MNGYAQTKWVAERLVINSQVRGLPTVIFRLGNQAASMSTGR 636
Query: 525 WNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNAN--KIYNFINT 582
WN D ++ + APD+DW +EFTPVDF + + Q+ T A+ KI++ N+
Sbjct: 637 WNNQDFIYLLIFCSIQSKMAPDLDWVVEFTPVDFTSSFITQILTKSFRASMGKIFHLTNS 696
Query: 583 NPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSE-----PLIQILRNKGKEYLTVN 637
N + +V+ +N +G ++ +P ++W ++ E +E L+Q++ K +
Sbjct: 697 NGPTWRQIVNWINDFGIPMRLIPLQQWVQLISTNEGAEYQQLHKLLQVIV-KDDTFFGAQ 755
Query: 638 NSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVPLENNNSTEYTDTNKQG 697
+ Y + NT +LK TYP
Sbjct: 756 SMYKRTNTEKVLKDMGGTYP---------------------------------------- 775
Query: 698 ISISNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENL 756
+ TV KV VTG+S+GIGE +V++L +G KVV ARR +L L
Sbjct: 776 VVTKRKATV---------GKVCIVTGASTGIGEAIVRELALIGYMKVVFCARRRTKLMEL 826
Query: 757 KTSLQNAPG----SIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKY 812
+ L+ A G +++ D+T +D++ VV + G ID+LVNNAG MY+ +M+
Sbjct: 827 VSKLE-AEGCMSSNLLPVACDITQMSDIQFVVSRAVETYGTIDVLVNNAGCMYYEMMKNG 885
Query: 813 KLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872
+EWN I+VN +G ++CIG +LP M+ + GHI+NI+S+AG R FAGLAVY+GTK+F
Sbjct: 886 PTKEWNLQIDVNCRGTMNCIGAVLPHMIKAGS-GHIVNITSDAGKRGFAGLAVYSGTKFF 944
Query: 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAV-PVLTTKEIS 931
IEG+S ALR E+ + I+VT +Q GDV+TE+ ++STD++ KYD+SKA P+L++ +++
Sbjct: 945 IEGMSQALRLEMVEHGIRVTNVQPGDVETEISNYSTDKEACSKYDVSKAGHPILSSSDVA 1004
Query: 932 QSIIFALLQPSHSAVNSILIEPPLASI 958
+++++A+ QPS AVN ILIEP I
Sbjct: 1005 RAVLYAVNQPSSVAVNEILIEPQATPI 1031
|
Source: Wuchereria bancrofti Species: Wuchereria bancrofti Genus: Wuchereria Family: Onchocercidae Order: Spirurida Class: Chromadorea Phylum: Nematoda Superkingdom: Eukaryota |
| >gi|443688298|gb|ELT91031.1| hypothetical protein CAPTEDRAFT_168750 [Capitella teleta] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 282/806 (34%), Positives = 451/806 (55%), Gaps = 57/806 (7%)
Query: 173 LSILKSSGKLNKEELPKLDSIAQIELDESMFQS---QKNIAKIWCKILNLYTLDKDENFF 229
+ +L +SGKL+K+ LP ++ IE+D + +K++ +W IL+L ++D E+FF
Sbjct: 500 IPLLAASGKLDKKALPPIEKSEGIEVDPEGLPTTPTEKSLVPLWADILSLKSVDIHESFF 559
Query: 230 EIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNETLKLDLIHEIDV 289
++GGHSL A +S++ E ++ L++ DLF H +V MA ++++ + +L+ +
Sbjct: 560 DLGGHSLLATKLLSRVRSEFNVELAVHDLFIHSSVSAMAKVIDSHAAGNAN-NLVSPVPT 618
Query: 290 NSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFC 349
+L V FW+ +Q K VLLTG TG+LG LL+ L+ TKC ++C
Sbjct: 619 -------VDLLKEVATFWRGMQYGKQWNK-AQVLLTGATGFLGAFLLRDLLLTTKCHVYC 670
Query: 350 PVRETPNKTLLQRLEDIM-----LKYHMSLD---LNNYTDRLILVKSDLSLEMLGLKNQD 401
+RE+P+ T QRL + +K LD + R+ V D+ L +GL ++D
Sbjct: 671 LLRESPDMTEKQRLLKTLEGFGIVKKEEGLDDKIRARFESRVTCVAGDVGLVNMGL-SED 729
Query: 402 EYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY 461
Y L ++D +IHAAA+VNLI PY AL+ NVL T+N+I+F++ NKIK +++STD+++
Sbjct: 730 GYAYLCSDVDAVIHAAAYVNLIYPYQALHGPNVLGTQNIIQFAWTNKIKPLYHISTDAVF 789
Query: 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLE 521
P+ ++ E + + D +T GY QSK V E LVL A + GLP ++ R GN+ G E
Sbjct: 790 PAGEQSCSETSDMNVYADRLT--DGYSQSKWVGEQLVLKAIERGLPAAVYRLGNLSGESE 847
Query: 522 FKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNA-NKIYNFI 580
WN D NL +++ G AP I W +E TPV+F++ +V +T ++ KI++ +
Sbjct: 848 HGVWNPQDFNLLMIQGCLNAGMAPKIPWDVEMTPVNFVSSFIVDMTQRLSLVLGKIFHLM 907
Query: 581 NTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHK--LNKRELSEPLIQILRNK------GKE 632
N N + + L ++ +GY +K VP+E W + L +R I+IL N +
Sbjct: 908 NCNTVKSQWLFEWIHGHGYPLKMVPFETWVKRCVLIRRSDQGYSIRILPNGVSLVRLDES 967
Query: 633 YLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVPLENNNSTEYTD 692
+ SY Q NT +L+ ++YP + + + + L
Sbjct: 968 FFANPRSYTQENTEKVLEILGKSYPRITNPLLSSYFEGLSRR------------------ 1009
Query: 693 TNKQGISISNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR 752
+ N + L KV VTG+SSGIG + + L GA V ARR ++
Sbjct: 1010 ------RVIPRRRTNTILDRPLEGKVAIVTGASSGIGAAISRQLAAAGASVAMAARREEK 1063
Query: 753 LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKY 812
LE +K + + G I K DV V ++V LG +DILVNNAG+MY+T+M+
Sbjct: 1064 LEEIKDEIDSNGGISIAVKCDVIDRKQVGEMVERTETTLGPVDILVNNAGIMYYTMMKNL 1123
Query: 813 KLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872
++W+ +++N KG L+C+G +L ML R+ GHI+NI+S+A R FAGLAVY+GTK+F
Sbjct: 1124 HEDQWDRQVDLNCKGPLNCVGAVLDGML-KRQTGHIVNITSDAARRGFAGLAVYSGTKFF 1182
Query: 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQ 932
+EG S ALR E++ +KVT IQ GDV+TEL +H++D + +D S + +L +I +
Sbjct: 1183 LEGFSQALRCELAQTGVKVTTIQPGDVRTELFTHTSDEEARAAFDGSASTTILEPSDIGR 1242
Query: 933 SIIFALLQPSHSAVNSILIEPPLASI 958
++++A+ QP++++VN ILIEP A I
Sbjct: 1243 AVVYAVTQPAYASVNEILIEPRGAPI 1268
|
Source: Capitella teleta Species: Capitella teleta Genus: Capitella Family: Capitellidae Order: Capitellida Class: Polychaeta Phylum: Annelida Superkingdom: Eukaryota |
| >gi|196005111|ref|XP_002112422.1| hypothetical protein TRIADDRAFT_25485 [Trichoplax adhaerens] gi|190584463|gb|EDV24532.1| hypothetical protein TRIADDRAFT_25485 [Trichoplax adhaerens] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 293/862 (33%), Positives = 451/862 (52%), Gaps = 96/862 (11%)
Query: 101 ALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKFHNHVPIAEEY 160
ALLE LD ++VI +GE + ++ V V E K I E K + Y
Sbjct: 433 ALLE--LDKVNAAVVIPQGE--EGSDKFLVAYVVPEGKTTRKEIREALKKRLPYFMIPSY 488
Query: 161 RKNLVQNFESLHLSILKSSGKLNKEELPKLDSIAQIELDES----MFQSQKNIAKIWCKI 216
L + +L +S KL+K++LP +D + + D+ ++++ +AK+WC +
Sbjct: 489 FVFLAS------VPLLPASAKLDKKQLPLIDPLRAVPNDDEDSVPRTETERIMAKMWCDV 542
Query: 217 LNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSN 276
L L +D DE+FF++GGHSL A I+ +N+ LS++DLF + TV MA+ +E
Sbjct: 543 LQLKAVDIDESFFDLGGHSLMATKLITSINDRFKTKLSVRDLFTYNTVISMASYVET--- 599
Query: 277 ETLKLDLIHEIDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLGIHLL 336
+L D+N L+++++ FW S++ SN+ +G+VLLTGVTG+LG +LL
Sbjct: 600 -----ELGISSDLNEICFTPCRLDIQLRAFWHSLRF-SNRWYHGSVLLTGVTGFLGAYLL 653
Query: 337 QKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHM-SLDLNNYTDRLILVKSDLSLEML 395
++ L T+ ++C VRE P+ + R+ ++ Y + D N+ +
Sbjct: 654 KEILATTEVDVYCIVREVPDSSGKDRVRANLVSYGLLPADRNDSSG-------------- 699
Query: 396 GLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYV 455
NQD + S +D +IHA A VNLI PY L +NV+ TKN+I+F+ +Y
Sbjct: 700 --ANQDFENAFSKRVDYVIHAGAVVNLIYPYKMLRSANVVGTKNIIKFAS----NLLYYF 753
Query: 456 STDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGN 515
ST+ I+P E+ + F + +T GY QSK V+E LVL A GLPV I R GN
Sbjct: 754 STNGIFPRGKHGCSENDDMIQFANRLT--DGYAQSKWVAEQLVLRARNRGLPVVIYRPGN 811
Query: 516 IGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNA-N 574
+ G + WN D +LKA AP+IDW LE TPVDF ++++V+ T N+ N
Sbjct: 812 LSGDRDTGAWNPSDFIFLMLKACVGARCAPNIDWQLEMTPVDFASEAIVRCTQNLTNCVG 871
Query: 575 KIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQILRNKGKEYL 634
+IY+ N N + + + L+ +G +K+V YE+WF ++N +
Sbjct: 872 RIYHITNRNTVSFRLVCDTLSQFGCTLKSVDYEEWF-QMND---------------MSFF 915
Query: 635 TVNNSYCQRNTLALLKSCDETYPETND---HTVRQFLDNLRNSNLLPNVPLENNNSTEYT 691
+N++ L TYP+ + T ++L+ LR++ ++ E N
Sbjct: 916 GNSNTFDNSIFTDQLTKFGLTYPKIDKDLIETYSKYLECLRSTKMISE---EENQP---- 968
Query: 692 DTNKQGISISNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID 751
L +V +TG+SSGIG + K L GA V ARR+D
Sbjct: 969 ----------------------LRGQVAVITGASSGIGATIAKHLALAGASVALGARRMD 1006
Query: 752 RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEK 811
RL++L +++ G I DVT + +V+K+V G + ILVNNAG MY+T M+
Sbjct: 1007 RLKSLCQEIRSEGGKAIGVPTDVTKKVEVEKLVNTAREVFGEVTILVNNAGCMYYTEMKN 1066
Query: 812 YKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871
+ EW I+VN KG+L+ I N+L ML + GHI+NISS+AG + F GL VY+GTK+
Sbjct: 1067 AHINEWERQIDVNCKGMLYGISNVLSRML-ANGCGHIVNISSDAGRKVFPGLTVYSGTKF 1125
Query: 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEIS 931
F+E IS +R E + ++VT IQ GDV TE+L++ D + KY S +L +I+
Sbjct: 1126 FVEAISQGVRLETAGSGVRVTSIQPGDVSTEILTYGVDAEARKKYGGSAESKILRPLDIA 1185
Query: 932 QSIIFALLQPSHSAVNSILIEP 953
++++AL QPS AVN ILIEP
Sbjct: 1186 NAVVYALTQPSFVAVNEILIEP 1207
|
Source: Trichoplax adhaerens Species: Trichoplax adhaerens Genus: Trichoplax Family: Order: Class: Phylum: Placozoa Superkingdom: Eukaryota |
| >gi|312084410|ref|XP_003144265.1| oxidoreductase [Loa loa] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/672 (37%), Positives = 393/672 (58%), Gaps = 43/672 (6%)
Query: 299 LNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKT 358
+++ ++ FW+S L+ + VLLTGVTG++G H+L K L+ T+ + C +RE+ T
Sbjct: 1 MDLHLRAFWRSTDLD-HSFSRDIVLLTGVTGFIGSHILVKLLLTTEMRVICLIRESAGVT 59
Query: 359 LLQRLEDIMLKYHMSLDLNN--YTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHA 416
RL D + K M + N R+ ++ D++L LGL +++EY+ L+YE+D +IHA
Sbjct: 60 TQFRLIDSIEKIGMMTNTLNDLIKSRVKIISGDVALIRLGL-SEEEYLFLTYEVDTVIHA 118
Query: 417 AAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVAD 476
AA+VNLI PY AL+ NVL T+N+++F NK+K +Y+ST++I PS ++ ED D
Sbjct: 119 AAYVNLIFPYQALHGINVLGTRNILDFCHQNKVKPLYYLSTNAIVPSNLKDVDEDIINDD 178
Query: 477 FDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536
+ +GY Q+K V+E LVLN+ GLP I R GN S+ WN D ++
Sbjct: 179 VQGKL--LNGYAQTKWVAERLVLNSQIRGLPTVIFRLGNQAASMSTGVWNKQDFIYLLIF 236
Query: 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNAN--KIYNFINTNPIHIKTLVSVL 594
+ APD+D+ +EFTPVDF + + Q+ T A+ KI++ N N + +V+ +
Sbjct: 237 CTIQTKLAPDLDFVVEFTPVDFTSSFITQILTKSFRASMGKIFHLTNNNAPTWRQIVNWI 296
Query: 595 NTYGYNIKTVPYEKWFHKLNKRELSE--PLIQILRNKGKEYLTVNNSYCQRNTLALLKSC 652
N +G ++ +P ++W ++ RE +E L ++L++K + +++ + NT +LK
Sbjct: 297 NDFGIPMRLIPMQQWVQLISTREGAECQQLQKLLQSKEDTLFSTYSTFKRTNTEKVLKDM 356
Query: 653 DETYPETNDHTVRQFLDNLRNSNLLPNVPLENNNSTEYTDTNKQGISISNAGTVNIVFGN 712
TYP +L + N A + FG
Sbjct: 357 GGTYPVVTKSLFTHWLRLMAQKNF-------------------------TAIPTSTPFGK 391
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQNAPG----SI 767
T KV VTG+S+GIGE +V++L +G KVV ARR +L L + L+ A G ++
Sbjct: 392 TTVGKVCIVTGASTGIGEAIVRELALIGYMKVVFCARRRTKLMELFSKLE-AEGCMSSNL 450
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKG 827
+ + D+T +DV+ VV + G ID+LVNNAG MY+ +M+ +EWN I+VN +G
Sbjct: 451 LPVQCDITQMSDVQFVVSRAVETFGTIDVLVNNAGCMYYEMMKNGPTKEWNLQIDVNCRG 510
Query: 828 VLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
++ IG +LP M+ + GHI+NI+S+AG R FAGLAVY+GTK+FIEG+S ALR E+ +
Sbjct: 511 TMNFIGAVLPHMIKAGS-GHIVNITSDAGKRGFAGLAVYSGTKFFIEGMSQALRLEMVEY 569
Query: 888 NIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAV-PVLTTKEISQSIIFALLQPSHSAV 946
I+VT +Q GDV+TEL SHS D++ DKYDISKA P+L + +I++++++A+ QPS AV
Sbjct: 570 GIRVTNVQPGDVETELGSHSIDKEACDKYDISKAGHPILNSPDIARAVLYAVNQPSAVAV 629
Query: 947 NSILIEPPLASI 958
N ILIEP I
Sbjct: 630 NEILIEPQATPI 641
|
Source: Loa loa Species: Loa loa Genus: Loa Family: Onchocercidae Order: Spirurida Class: Chromadorea Phylum: Nematoda Superkingdom: Eukaryota |
| >gi|212531055|ref|XP_002145684.1| NRPS-like enzyme, putative [Talaromyces marneffei ATCC 18224] gi|210071048|gb|EEA25137.1| NRPS-like enzyme, putative [Talaromyces marneffei ATCC 18224] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 274/862 (31%), Positives = 440/862 (51%), Gaps = 78/862 (9%)
Query: 135 LENDFLSKMISENEKFHNHVPI-------AEEYRKNLVQNFESLHLSIL----------K 177
LE ++ ++ + E + +PI + E R+ L + L +
Sbjct: 448 LERQLVAYVVRDREASQDRLPIVIDESGRSPEARRALAPYLAHYMIPTLWVEMDALPTNE 507
Query: 178 SSGKLNKEELPKLDSIAQIELDESMFQSQ----KNIAKIWCKILNL--YTLDKDENFFEI 231
SGK++ + LP Q+ + S K+IA W IL + +L +++FF +
Sbjct: 508 VSGKVDVKNLPPPPKPVQVNGNHKPTVSDSVSFKDIAAFWAAILKVPQSSLKPEDDFFIL 567
Query: 232 GGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQ-EMAALLENKSNETLKLDLIHEIDVN 290
GG SL A S++ + +SI L PT+ +AA+ + + + +
Sbjct: 568 GGQSLMLADLSSRLAKNYGFRVSIARLAEVPTLAGHLAAVRAARDGHSAAVQAELPSILR 627
Query: 291 SYKSLDENLNVRVQCFWKSVQLNSNKLKYG-NVLLTGVTGYLGIHLLQKFLVDTKCTLFC 349
+LD+++ K LN + VLLTGVTG+LG LL + L T + C
Sbjct: 628 KDSTLDDDI--------KPYNLNLRPIDTAETVLLTGVTGFLGAFLLNELLESTSAHIIC 679
Query: 350 PVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD----RLILVKSDLSLEMLGLKNQDEYVS 405
VR + TL + E + LDL + D R+ ++ +LSL+ GL + +E+
Sbjct: 680 LVRFG-HPTLDGQPEAVARIRKNLLDLGLWRDSIMERVEILPGNLSLDRFGL-SHEEFDD 737
Query: 406 LSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS 465
L+ + +I+HAAA VNL+ PY AL K+NV T+ +I + + + YVST+ + P +
Sbjct: 738 LASRVQVIVHAAATVNLVYPYAALQKANVEGTREIIRLACKSG-ATLQYVSTNGVLPPSG 796
Query: 466 ENFQEDYTVADFDDFMTT-TSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKN 524
++ + T+ +D GYGQ+K V+E LVL AG+ GLPV I R G I G
Sbjct: 797 KDGWSEDTILPVEDVPEKLPDGYGQTKWVAEQLVLEAGRRGLPVKIHRAGTISGHSTTGA 856
Query: 525 WNLVDLNLYILKAITRLGYAPDID-WYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTN 583
N DL I+ RLGYAPD+D W E TPVDF++KS++ L++ I++ + +
Sbjct: 857 SNAWDLLSAIIVESIRLGYAPDVDGWRAEMTPVDFVSKSIIHLSSQTAPQQTIFHLGDPD 916
Query: 584 PIHIKTLVSVLNTYGYNIKTVPYEKWFHKLN-KRELSEP-----LIQILRNKG------K 631
PI I+++ L GY K + + +W N KR + + + ILR+ K
Sbjct: 917 PITIRSVFDQLEQLGYPTKPLGWGEWVTLWNEKRGIVKGGDGAFTVDILRSGMPTVDFLK 976
Query: 632 EYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVPLENNNSTEYT 691
+ +NNS + +A+ + P+ + + + + LP P
Sbjct: 977 GIVVLNNSKTRPFRIAVER------PKVDTALLSTYTRHWFARGWLPQAP---------- 1020
Query: 692 DTNKQGISISNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID 751
++G+++S A VN + L +V +TG+SSGIG + LV G V ARR++
Sbjct: 1021 ---RKGVAMS-AKQVN---RSPLYGRVAVITGASSGIGAAVATALVKQGCHVALGARRVE 1073
Query: 752 RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEK 811
LE ++ + A G I++ DVT + V+++VR ELG +DILV+ AGVMYFT+M
Sbjct: 1074 ALEAVQRNFGTAEGKSIIRATDVTDKKQVEELVRTATDELGAVDILVSCAGVMYFTMMAN 1133
Query: 812 YKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871
+ EEW ++VN KG+LHC+ + +P ML SR GHI+ ISS+AG + F GL VY+ +K+
Sbjct: 1134 VQTEEWERTVDVNCKGLLHCLSSTVPGML-SRGSGHIVAISSDAGRKVFPGLGVYSASKF 1192
Query: 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEIS 931
F+E +LR E + + ++VT +Q G+ T+LL+ STD + + KY +L +++
Sbjct: 1193 FVEATLQSLRLETAGKGLRVTSVQPGNTATDLLNMSTDAEAIKKYGEPTGAQILDPSDVA 1252
Query: 932 QSIIFALLQPSHSAVNSILIEP 953
SII+AL QP+H +VN +LIEP
Sbjct: 1253 NSIIYALSQPAHVSVNEVLIEP 1274
|
Source: Talaromyces marneffei ATCC 18224 Species: Talaromyces marneffei Genus: Talaromyces Family: Trichocomaceae Order: Eurotiales Class: Eurotiomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|242771947|ref|XP_002477944.1| NRPS-like enzyme, putative [Talaromyces stipitatus ATCC 10500] gi|218721563|gb|EED20981.1| NRPS-like enzyme, putative [Talaromyces stipitatus ATCC 10500] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 274/873 (31%), Positives = 437/873 (50%), Gaps = 100/873 (11%)
Query: 135 LENDFLSKMISENEKFHNHVPIA-------EEYRKNLVQNFESLHLSIL----------K 177
LE ++ ++ + E + PIA E R+ L + L +
Sbjct: 450 LERQLVAYVVRDREASQDRPPIAIDELGRSPEARRALAPYLAHYMIPTLWVEMDALPTNE 509
Query: 178 SSGKLNKEELPKLDSIAQI------ELDESMFQSQKNIAKIWCKILNL--YTLDKDENFF 229
SGK++ + LP + AQ+ E+ +S+ S K++A W IL + +L ++NFF
Sbjct: 510 VSGKVDVKSLPPPPNPAQVNGNHKREISDSV--SFKDVAAFWATILKVPQSSLKPEDNFF 567
Query: 230 EIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTV-----------QEMAALLENKSNET 278
++GG SL A S++++ + I L PT+ +A ++ +
Sbjct: 568 DLGGQSLMLADLSSRLSKNYGFRVPIARLAEVPTLAGHLTAVRAARDGHSAAIQAELPSI 627
Query: 279 LKLDLIHEIDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLGIHLLQK 338
L+ D E D+ + N+N+ C K VLLTGVTG+LG LL
Sbjct: 628 LRKDSTLEDDIRPH-----NVNL---CPID---------KADTVLLTGVTGFLGAFLLND 670
Query: 339 FLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD----RLILVKSDLSLEM 394
+ T + C VR TL + E + LDL + D R+ ++ +LSL+
Sbjct: 671 LIESTNAQIICLVRFG-EPTLEGQPEAVARIRKNLLDLGLWRDSIMERVEILPGNLSLDC 729
Query: 395 LGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHY 454
GL + +E+ L+ + +I+HAAA VNL+ PY AL K+NV T+ +I + + + Y
Sbjct: 730 FGL-SHEEFDDLASRVQVIVHAAATVNLVYPYAALQKANVEGTREIIRLACKSG-ATLQY 787
Query: 455 VSTDSIYP-STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRC 513
VST+ + P S E + ED + + GYGQ+K V+E LVL AG+ GLPV I R
Sbjct: 788 VSTNGVLPPSGKEGWSEDTILPVEEVPEKLPDGYGQTKWVAEQLVLEAGRRGLPVKIHRA 847
Query: 514 GNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDID-WYLEFTPVDFLTKSLVQLTTNVNN 572
G I G N DL I+ RLGYAPD+D W E TPVDF++KS++ L T +
Sbjct: 848 GTISGHSTTGASNAWDLLSAIIVESIRLGYAPDVDGWRAEMTPVDFVSKSIIHLATQIAP 907
Query: 573 ANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKREL------SEPLIQIL 626
I++ + +PI I+++ L GY K V +++W N+R + IL
Sbjct: 908 QQTIFHLGDPDPITIRSVFEQLEQLGYPTKPVGWDEWIKLWNERRGIGKGGDGAFTVDIL 967
Query: 627 RNKGKEY------LTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNV 680
R+ + +NNS + +A+ + P+ + + + + LP
Sbjct: 968 RSGMPTVDFLNGIVVLNNSKTRPFRIAVER------PKVDTALLSTYTRHWFARGWLPRA 1021
Query: 681 PLENNNSTEYTDTNKQGISISNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLG 740
P ++G++++ + + L +V +TG+SSGIG + LV G
Sbjct: 1022 P-------------RKGVAMTRKSANS----SPLYGRVAVITGASSGIGAAVATALVERG 1064
Query: 741 AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNN 800
V ARR++ LE ++ + I++ DVT + V+++VR ELG +DILV+
Sbjct: 1065 CHVALGARRLEALEAVQRKFGTSEAKSIIRPTDVTEKKQVEELVRAATDELGPVDILVSC 1124
Query: 801 AGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF 860
AGVMYFT+M + EEW ++VN KG+LHC+ + +P ML SR GHI+ ISS+AG + F
Sbjct: 1125 AGVMYFTMMANVQTEEWERTVDVNCKGLLHCLSSTVPGML-SRGSGHIIAISSDAGRKVF 1183
Query: 861 AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISK 920
GL VY+ +K+F+E +LR E + + ++VT +Q G+ T+LL+ STD + + KY
Sbjct: 1184 PGLGVYSASKFFVEATLQSLRLETAGKGLRVTSVQPGNTATDLLNMSTDAEAIKKYGEPT 1243
Query: 921 AVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
+L +++ SI++AL QP+H AVN +LIEP
Sbjct: 1244 GAQILDPADVANSIVYALSQPAHVAVNEVLIEP 1276
|
Source: Talaromyces stipitatus ATCC 10500 Species: Talaromyces stipitatus Genus: Talaromyces Family: Trichocomaceae Order: Eurotiales Class: Eurotiomycetes Phylum: Ascomycota Superkingdom: Eukaryota |
| >gi|260827070|ref|XP_002608488.1| hypothetical protein BRAFLDRAFT_128033 [Branchiostoma floridae] gi|229293839|gb|EEN64498.1| hypothetical protein BRAFLDRAFT_128033 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 222/585 (37%), Positives = 334/585 (57%), Gaps = 53/585 (9%)
Query: 379 YTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATK 438
+ +R+ +K D+SL LG+ ++D Y LS+E AL+ NVL T+
Sbjct: 793 FEERITCIKGDVSLMNLGMSDED-YNFLSHE------------------ALHGPNVLGTQ 833
Query: 439 NLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLV 498
N++ F+ NKIK HY+ST++++P + E+ + + +T GYGQ+K V+E LV
Sbjct: 834 NVVLFACTNKIKPLHYISTNAVFPHGCQQCGEEEDMLQYASQLT--DGYGQTKWVAEQLV 891
Query: 499 LNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDF 558
L A GLPV++ R GN+ G WN D L L+A APDIDW +E TPVDF
Sbjct: 892 LRAKARGLPVTVYRLGNLSGDSHLAYWNPADFILLTLQACVDTMAAPDIDWQIEMTPVDF 951
Query: 559 LTKSLVQLTTNVN-NANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNK-- 615
+++++V L+ N+ A KI++ IN PI +TL + GY +K +P++ W ++ +
Sbjct: 952 VSETIVMLSQNIMLAAGKIFHLINPQPIKSQTLFDWMRVNGYPLKLLPHKDWCTRVEQHS 1011
Query: 616 RELSEP--LIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673
RE E L ++R+ T ++Y N ++ + YPE +R + NL
Sbjct: 1012 REQGEESGLGTMIRD--PTVFTARSTYNMHNFNFVMSALGLAYPEITRELLRTYFHNLTQ 1069
Query: 674 SNLLPNVPLENNNSTEYTDTNKQGISISNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLV 733
+L NK+ + S LA KV VTG+SSGIG
Sbjct: 1070 RGVL--------------TCNKKLRAASGP----------LAGKVAVVTGASSGIGASTA 1105
Query: 734 KDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793
L GA+VV VARR+DRL+ L+ ++ G IV K DV +VK +++ V LG
Sbjct: 1106 LYLARAGAQVVLVARRVDRLQQLQKDVEAEGGVAIVGKADVVNRKEVKDMMKHVETTLGG 1165
Query: 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISS 853
+D+LVN AGVMY+T+M+ + E+W +++N KGVL+CIG +LP M+ ++ GHI+N+SS
Sbjct: 1166 VDVLVNCAGVMYYTMMKNMQEEQWERQVDLNCKGVLNCIGAVLPGMVE-KQTGHIINMSS 1224
Query: 854 NAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVV 913
+AG R FAGL+VY+GTK+FIEG+S +R E+S I+VTCIQ GDVKTELL H+TD +
Sbjct: 1225 DAGRRGFAGLSVYSGTKFFIEGLSQGMRHELSGSGIRVTCIQPGDVKTELLGHTTDMEAK 1284
Query: 914 DKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEPPLASI 958
+++D S +L ++++ ++++A QP H VN ILIEP A I
Sbjct: 1285 EQFDGSGQCTILNPEDVANAVVYAASQPPHVGVNEILIEPREAPI 1329
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 958 | ||||||
| UNIPROTKB|G4N9G1 | 1280 | MGG_03290 "N-(5-amino-5-carbox | 0.249 | 0.186 | 0.437 | 1.3e-105 | |
| ASPGD|ASPL0000029611 | 1270 | AN5318 [Emericella nidulans (t | 0.249 | 0.188 | 0.429 | 7.1e-101 | |
| POMBASE|SPAP7G5.04c | 1419 | lys1 "aminoadipate-semialdehyd | 0.435 | 0.293 | 0.270 | 6.9e-41 | |
| UNIPROTKB|G5EI34 | 1188 | MGCH7_ch7g332 "L-aminoadipate- | 0.437 | 0.352 | 0.276 | 3.3e-39 | |
| SGD|S000000319 | 1392 | LYS2 "Alpha aminoadipate reduc | 0.340 | 0.234 | 0.290 | 3e-34 | |
| UNIPROTKB|Q10896 | 2512 | nrp "PROBABLE PEPTIDE SYNTHETA | 0.351 | 0.134 | 0.294 | 6.9e-34 | |
| UNIPROTKB|Q9KKP5 | 239 | VC_A1057 "Oxidoreductase, shor | 0.239 | 0.958 | 0.365 | 1.4e-33 | |
| TIGR_CMR|VC_A1057 | 239 | VC_A1057 "oxidoreductase, shor | 0.239 | 0.958 | 0.365 | 1.4e-33 | |
| TIGR_CMR|CPS_4937 | 239 | CPS_4937 "oxidoreductase, shor | 0.239 | 0.958 | 0.357 | 2.9e-33 | |
| ASPGD|ASPL0000009631 | 1077 | AN8105 [Emericella nidulans (t | 0.460 | 0.409 | 0.266 | 3.4e-33 |
| UNIPROTKB|G4N9G1 MGG_03290 "N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 1.3e-105, Sum P(3) = 1.3e-105
Identities = 105/240 (43%), Positives = 151/240 (62%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L+ KV VTG+SSGIG + L G V ARR + L+ LK + +IV K D
Sbjct: 1037 LSGKVAVVTGASSGIGAAVATALSKEGVHVALAARRTEALDALKAKIATNGTKVIVHKTD 1096
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + V+ +++ ELG +DILV+ AGVMYFT+M + +EW ++VN KG+LHC+
Sbjct: 1097 VTDKAQVESLIKTASEELGPVDILVSCAGVMYFTMMANVQTDEWERTVDVNCKGLLHCLS 1156
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ +PSML SR GHI+ ISS+AG + F GL VY+ +K+F+E +LR E + ++VT
Sbjct: 1157 STVPSML-SRGKGHIVAISSDAGRKVFPGLGVYSASKFFVEATLQSLRVETAGTGLRVTS 1215
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
+Q G+ TELL STD++ + KY VL ++++ SI++AL QP H AVN +LIEP
Sbjct: 1216 VQPGNTATELLGMSTDQEAIKKYGEPTGAKVLDAEDVANSIVYALRQPEHVAVNEVLIEP 1275
|
|
| ASPGD|ASPL0000029611 AN5318 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 7.1e-101, Sum P(3) = 7.1e-101
Identities = 103/240 (42%), Positives = 151/240 (62%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L+ KV VTG+SSGIG + L GA V ARR+D LE+LK L + ++ K D
Sbjct: 1027 LSGKVAVVTGASSGIGAAVATALAREGAHVALGARRLDALESLKEKLSASGVKVVTCKTD 1086
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT V+ +V+ ELG +DILV AGVMYFT+M +++EW ++VN KG+L+ +
Sbjct: 1087 VTDRKQVEGLVKAATEELGPVDILVACAGVMYFTMMANTQMDEWERTVDVNCKGILNSLA 1146
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ +P ML +R GH++ ISS+AG + F GL VY+ +K+F+E ALR E + + ++VT
Sbjct: 1147 STVPGML-ARGKGHVVAISSDAGRKVFPGLGVYSASKFFVEATLQALRLETAGQGLRVTA 1205
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
+Q G+ T+LL STD + + KY +L ++++ SII+AL QP H A+N ILIEP
Sbjct: 1206 VQPGNTATDLLGMSTDAEAIKKYGEPSGAQILDPEDVANSIIYALRQPEHVAMNEILIEP 1265
|
|
| POMBASE|SPAP7G5.04c lys1 "aminoadipate-semialdehyde dehydrogenase" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 6.9e-41, Sum P(2) = 6.9e-41
Identities = 120/443 (27%), Positives = 223/443 (50%)
Query: 198 LDESMFQSQKNIAKIWCKILNLYT-LDKDENFFEIGGHSLTAALCISKMNEELSLNLSIK 256
+DE++ ++++I IW +I+ T ++K +FF+IGGHS+ A I ++ ++ ++N+ +
Sbjct: 878 VDETLTATERDIRDIWLRIIPHATDVNKKASFFDIGGHSILATRLIFELRKKFAVNVPLG 937
Query: 257 DLFAHPTVQEMAALLEN-KSNETLK-LDL----IHEIDVNSYKSLDENLNVRVQCFWKSV 310
+F+ PT++ +A +E KS E + +D+ E ++ K + +++ + F S
Sbjct: 938 LVFSEPTIEGLAKEIERMKSGEMISVMDIGKEETREPEIEYGKDALDLVDLIPKEFPTSK 997
Query: 311 QLNSNKLKYGNVLLTGVTGYLGIHLLQKFLV-DTKCTLFCPVRETPNKTLLQRLEDIMLK 369
L ++ K V LTG GYLG+ +L+ + + + VR + + L+RL+D
Sbjct: 998 DLGIDEPK--TVFLTGANGYLGVFILRDLMTRSSNLKVIALVRASSEEHGLKRLKDSCTA 1055
Query: 370 YHMSLDLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNAL 429
Y + D ++ ++ +V DL+LE G++ + ++ L+ +D +IH A V+ + PY+ L
Sbjct: 1056 YGV-WD-ESWAQKISVVNGDLALENWGIEER-KWNKLTEVVDYVIHNGALVHWVYPYSKL 1112
Query: 430 YKSNVLATKNLIEFSFLNKIKSFHYVS-TDSIYPSTSENFQEDYT------VADFDDFMT 482
NV+ T ++ L K KS +VS T ++ N + T + + D
Sbjct: 1113 RGPNVMGTITALKLCSLGKGKSLSFVSSTSTVDTEYYVNLSNEITSKGGNGIPESDPLQG 1172
Query: 483 TT----SGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI 538
++ +GYGQSK VSEYLV AG GL +VR G I G + N D + ++K
Sbjct: 1173 SSKDLHTGYGQSKWVSEYLVRQAGLRGLRGVVVRPGYILGDSKSGAINTDDFLVRMVKGC 1232
Query: 539 TRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNP-IHIKTLVSVLNTY 597
LG P+I+ + P D + + +V + I + ++P + + L+T+
Sbjct: 1233 IELGLYPNINNTVNMVPADHVAR-VVTASAFHPEQGVIVAHVTSHPRLRFNQFLGTLSTF 1291
Query: 598 GYNIKTVPYEKWFHKLNKRELSE 620
G+N K Y W L + ++E
Sbjct: 1292 GFNTKLSEYVNWRIALERFVINE 1314
|
|
| UNIPROTKB|G5EI34 MGCH7_ch7g332 "L-aminoadipate-semialdehyde dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 3.3e-39, Sum P(2) = 3.3e-39
Identities = 124/449 (27%), Positives = 214/449 (47%)
Query: 192 SIAQIELDESMFQSQKNIAKIWCKI---LNLYTLDKDENFFEIGGHSLTAALCISKMNEE 248
S +IE ES+ ++++ +A W + LN ++ D +FF++GGHS+ A + + ++
Sbjct: 626 SSEEIERWESLTETERAVATRWAALIQGLNEKSIAPDNHFFDLGGHSILAQQMLLDVRKQ 685
Query: 249 LSLNLSIKDLFAHPTVQEMAALLENK---SNETLKLDLIHEIDVNSYKSLDENLNVRVQC 305
+ N+SI L+ +PT+ + ++ +N+ + E + NSY ++L ++
Sbjct: 686 MGANVSINTLYENPTLGAFSLQIDKHLGAANDASTSQV--EDEANSYAKARDDLVKKLPA 743
Query: 306 FWKSVQLNSNKLKYG-NVLLTGVTGYLGIHLLQKFLVDT--KCTLFCPVRETPNKTLLQR 362
+K+ +S + + LTG TG+LG L++ L T + L VR K +R
Sbjct: 744 SYKTADPSSIRASSRPTIFLTGATGFLGAFLIRDILQRTSRQLKLIAHVRAKDQKAATER 803
Query: 363 LEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNL 422
L + Y + D + RL V DL+ LG+ +Q + LS E+D++IH A V+
Sbjct: 804 LTRSLQGYGIWRD--EWAGRLSCVVGDLAKPQLGI-DQPTWERLSNEVDVVIHNGATVHW 860
Query: 423 ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSI-----YPSTSENFQE--DYTVA 475
+ + + +NV +T + K K F +VS+ S+ Y SE V
Sbjct: 861 VRRWQDMLAANVTSTIEAMRLCNEGKPKLFTFVSSTSVLDTEHYVQLSERQLSTGQGAVP 920
Query: 476 DFDDFMTTTSG----YGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLN 531
+ DD + +G YGQ+K +SE LV AG+ GL S+VR G I G E N D
Sbjct: 921 ESDDLEGSATGLGTGYGQTKWISEQLVREAGRRGLRGSVVRPGYILGDFESGCSNTDDFL 980
Query: 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTN---VNNANKIYNF-INTNP-IH 586
+ LK +LG P I + PV+ + + +V N V ++ + +P +
Sbjct: 981 IRFLKGCIQLGTRPRILNTVNAVPVNHVARVVVAAGLNPVPVQGNEGVHVVHVTGHPRLR 1040
Query: 587 IKTLVSVLNTYGYNIKTVPYEKWFHKLNK 615
+ +S+L YGY + VPY+ W +L +
Sbjct: 1041 MNEYLSLLEFYGYKVPEVPYDSWKEELEQ 1069
|
|
| SGD|S000000319 LYS2 "Alpha aminoadipate reductase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 3.0e-34, Sum P(2) = 3.0e-34
Identities = 103/354 (29%), Positives = 169/354 (47%)
Query: 321 NVLLTGVTGYLGIHLLQKFL----VDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDL 376
NV +TGVTG+LG ++L L + +F VR + RL+ + Y +
Sbjct: 972 NVFVTGVTGFLGSYILADLLGRSPKNYSFKVFAHVRAKDEEAAFARLQKAGITYGTWNE- 1030
Query: 377 NNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLA 436
+ + +V DLS GL ++ +++ L+ +D+IIH A V+ + PY L NV++
Sbjct: 1031 -KFASNIKVVLGDLSKSQFGLSDE-KWMDLANTVDIIIHNGALVHWVYPYAKLRDPNVIS 1088
Query: 437 TKNLIEFSFLNKIKSFHYVSTDSI-----YPSTSENFQEDYT--VADFDDFMTT----TS 485
T N++ + + K K F +VS+ S Y + S+ + + + DD M + T
Sbjct: 1089 TINVMSLAAVGKPKFFDFVSSTSTLDTEYYFNLSDKLVSEGKPGILESDDLMNSASGLTG 1148
Query: 486 GYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP 545
GYGQSK +EY++ AG+ GL IVR G + G+ + N D L LK +LG P
Sbjct: 1149 GYGQSKWAAEYIIRRAGERGLRGCIVRPGYVTGASANGSSNTDDFLLRFLKGSVQLGKIP 1208
Query: 546 DIDWYLEFTPVDFLTKSLVQLTTNVNNANKI-YNFINTNP-IHIKTLVSVLNTYGYNIKT 603
DI+ + PVD + + +V + N N++ + +P I K + L+ YGY+++
Sbjct: 1209 DIENSVNMVPVDHVARVVVATSLNPPKENELAVAQVTGHPRILFKDYLYTLHDYGYDVEI 1268
Query: 604 VPYEKWFHKL-------NKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLK 650
Y KW L N+ PL+ ++ + E T RN +A LK
Sbjct: 1269 ESYSKWKKSLEASVIDRNEENALYPLLHMVLDNLPES-TKAPELDDRNAVASLK 1321
|
|
| UNIPROTKB|Q10896 nrp "PROBABLE PEPTIDE SYNTHETASE NRP (PEPTIDE SYNTHASE)" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 321 (118.1 bits), Expect = 6.9e-34, Sum P(2) = 6.9e-34
Identities = 105/357 (29%), Positives = 169/357 (47%)
Query: 206 QKNIAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQ 265
+K +A I+ ++L L + D++FFE+GG SL A I+ +N L+ +L ++ L + +
Sbjct: 1990 EKTVAGIFARVLGLERVGVDDSFFELGGDSLAAMRVIAAINTTLNADLPVRALLHASSTR 2049
Query: 266 EMAALLENKSNETL--KLDLIHEIDVNSYKSLDENLN--VRVQCFWKSVQLNSNKLKYGN 321
++ LL + T +L +H + + D L+ + +V L +
Sbjct: 2050 GLSQLLGRDARPTSDPRLVSVHGDNPTEVHASDLTLDRFIDADTLATAVNLPGPSPELRT 2109
Query: 322 VLLTGVTGYLGIHLLQKFL--VDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNY 379
VLLTG TG+LG +L+ + L +D L C VR ++ +RLE L L ++
Sbjct: 2110 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPEL-LRHF 2168
Query: 380 ----TDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVL 435
DRL +V D S LGL +Q + L+ +D+I+ +AA VN PY+ L+ NV
Sbjct: 2169 KELAADRLEVVAGDKSEPDLGL-DQPMWRRLAETVDLIVDSAAMVNAF-PYHELFGPNVA 2226
Query: 436 ATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDYTVADFDDFMTT----TSGYGQS 490
T LI + K+K F YVST + + + F ED + T GYG S
Sbjct: 2227 GTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYGTS 2286
Query: 491 KIVSEYLVLNAGQM-GLPVSIVRCGNIGGSLEFKNW-NLVDLNLYILKAITRLGYAP 545
K E L+ A + LPV++ RCG I + N+ D ++ ++ G AP
Sbjct: 2287 KWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIAP 2343
|
|
| UNIPROTKB|Q9KKP5 VC_A1057 "Oxidoreductase, short-chain dehydrogenase/reductase family" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 1.4e-33, P = 1.4e-33
Identities = 87/238 (36%), Positives = 137/238 (57%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
++ +TG+SSGIGE + + G ++ VARR++RLE L N P ++ +K+DVT
Sbjct: 4 LVVITGASSGIGEAIARRFSEAGHPLLLVARRVERLEAL-----NLPNTLC-EKVDVTEA 57
Query: 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILP 837
+ + + A G D+LVNNAGVM ++ + EW M +VN+ G+L+ + +L
Sbjct: 58 ATLVAAIAKAEALYGPADLLVNNAGVMLLGQIDTQEANEWKRMFDVNVLGLLNGMHAVLA 117
Query: 838 SMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAG 897
M R G I+NISS AG + F A Y GTK+ + IS +R+EV+ N++VT I G
Sbjct: 118 DM-KDRNYGTIVNISSIAGKKTFPNHAAYCGTKFAVHAISENVREEVAASNVRVTTIAPG 176
Query: 898 DVKTELLSHSTDRDVVDKYDISKAVP--VLTTKEISQSIIFALLQPSHSAVNSILIEP 953
V+TELLSH+T ++ + YD K VL +++++++FA QP + I + P
Sbjct: 177 AVETELLSHTTSNEIKEGYDAWKVDMGGVLAADDVARAVLFAYQQPQSVCIREIALAP 234
|
|
| TIGR_CMR|VC_A1057 VC_A1057 "oxidoreductase, short-chain dehydrogenase/reductase family" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 1.4e-33, P = 1.4e-33
Identities = 87/238 (36%), Positives = 137/238 (57%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
++ +TG+SSGIGE + + G ++ VARR++RLE L N P ++ +K+DVT
Sbjct: 4 LVVITGASSGIGEAIARRFSEAGHPLLLVARRVERLEAL-----NLPNTLC-EKVDVTEA 57
Query: 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILP 837
+ + + A G D+LVNNAGVM ++ + EW M +VN+ G+L+ + +L
Sbjct: 58 ATLVAAIAKAEALYGPADLLVNNAGVMLLGQIDTQEANEWKRMFDVNVLGLLNGMHAVLA 117
Query: 838 SMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAG 897
M R G I+NISS AG + F A Y GTK+ + IS +R+EV+ N++VT I G
Sbjct: 118 DM-KDRNYGTIVNISSIAGKKTFPNHAAYCGTKFAVHAISENVREEVAASNVRVTTIAPG 176
Query: 898 DVKTELLSHSTDRDVVDKYDISKAVP--VLTTKEISQSIIFALLQPSHSAVNSILIEP 953
V+TELLSH+T ++ + YD K VL +++++++FA QP + I + P
Sbjct: 177 AVETELLSHTTSNEIKEGYDAWKVDMGGVLAADDVARAVLFAYQQPQSVCIREIALAP 234
|
|
| TIGR_CMR|CPS_4937 CPS_4937 "oxidoreductase, short-chain dehydrogenase/reductase family" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.9e-33, P = 2.9e-33
Identities = 85/238 (35%), Positives = 139/238 (58%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
++ +TG+SSGIGE+L K + G ++ +ARR+++LE L L N + K+DVT +
Sbjct: 4 LVVITGASSGIGEELAKQMNAQGHPLLLLARRVEKLEAL--GLSNT----LCMKVDVTNK 57
Query: 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILP 837
+ + G +D+LVNNAG+M ++ EW AM +VN+ G+L+ + +LP
Sbjct: 58 EAFQHAINIATDMYGPVDLLVNNAGLMLLGQVDVQNAAEWQAMYDVNVIGLLNGMQTVLP 117
Query: 838 SMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAG 897
+M R G I+NISS AG + F A Y GTK+ + IS +R+EV++ N++V I G
Sbjct: 118 AM-KKRNTGTIINISSVAGRKTFGDHAAYCGTKFAVHAISENVREEVANNNVRVITIAPG 176
Query: 898 DVKTELLSHSTDRDVVDKYDISKAVP--VLTTKEISQSIIFALLQPSHSAVNSILIEP 953
V+TELLSH++ +++ Y+ K VL ++S +I +A QP + + I++ P
Sbjct: 177 AVETELLSHTSSTEIIAGYESWKKEMGGVLAPIDVSNAISYAYNQPQNVCIREIVLAP 234
|
|
| ASPGD|ASPL0000009631 AN8105 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 131/491 (26%), Positives = 221/491 (45%)
Query: 161 RKNLVQNFES-LHLSILKSSGKLNKEELPKLDSIAQIELDESMFQSQKNIAKIWCKILNL 219
RK L +FES L + L ++G + P+L + + W IL
Sbjct: 515 RKKLAHDFESELQSTKLSTNGFSCRNLQPQLKDVGD------------RVRHAWAHILGH 562
Query: 220 Y--TLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAA----LLEN 273
+L ++FF +GG SL A ++ +N + L+L +F +PT++ M+ LL N
Sbjct: 563 TPASLSMQDDFFSLGGTSLHAVHLLNNLNTSMGLSLRAATVFENPTLEGMSEAVSRLLHN 622
Query: 274 ----KSNETLKLDLIHEIDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTG 329
++ T K+ L + D+ K L N W+ S G V LTG TG
Sbjct: 623 TPAASTSVTSKIPLWIQ-DMRLGKGLQRNAGTPPS--WQD---ESE----GRVFLTGATG 672
Query: 330 YLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKS 388
++G LL + L + + C +R R+ D + KY+++L + ++ V
Sbjct: 673 FVGAMLLAQLLAHPRVKAVACLIRAKDESHARDRIRDTLSKYNLALYPHEEA-KIEAVAG 731
Query: 389 DLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNK 448
DLS LG + +++Y + ++ H AA VN I PY+ +NV T N I FS ++
Sbjct: 732 DLSQPNLGFE-EEQYQHYAQWSSVVFHLAAHVNYIEPYSTHRAANVTGTLNAILFSQAHR 790
Query: 449 IKSFHYVSTDSIYPST-----SENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ 503
KS HY S+ S Y T + ED D + +GY QSK +E +V NA
Sbjct: 791 TKSLHYTSSISAYGPTGFVTGTRYLAEDERPQDHMLALEFDTGYAQSKFTAETIVWNAID 850
Query: 504 MGLPVSIVRCGNIGGSLEFK---NWNLVDLNLYILKAITRLGYAPDIDWYLE-FTPVDFL 559
GLP++I R G + G K + N D ++K + G P + + + PV+F+
Sbjct: 851 AGLPIAIYRLGTVLGYTSGKGPMHANPADFLTRLVKTCIQQGVYPCLSDHKDSIVPVNFV 910
Query: 560 TKSLVQLTTNVNNANKIYNFINTNPIHIK---TLVSVLNTYGYN-IKTVPYEKWFHKLNK 615
SL+ +++ + ++ YN ++ + + S+ N G + ++ VPY +W ++
Sbjct: 911 VSSLMHISSRTASLHRAYNVVHPHQCTLDFSAVFQSISNHLGTDCLREVPYREWI-EVTS 969
Query: 616 RELSEPLIQIL 626
PL +L
Sbjct: 970 IASDNPLTSLL 980
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 958 | |||
| COG4221 | 246 | COG4221, COG4221, Short-chain alcohol dehydrogenas | 3e-73 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 6e-72 | |
| cd08934 | 243 | cd08934, CAD_SDR_c, clavulanic acid dehydrogenase | 5e-61 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 8e-58 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 1e-56 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 3e-52 | |
| cd05346 | 249 | cd05346, SDR_c5, classical (c) SDR, subgroup 5 | 6e-51 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 6e-49 | |
| COG0300 | 265 | COG0300, DltE, Short-chain dehydrogenases of vario | 8e-48 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 4e-46 | |
| PRK05557 | 248 | PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) | 4e-46 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 2e-45 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 2e-44 | |
| PRK06180 | 277 | PRK06180, PRK06180, short chain dehydrogenase; Pro | 3e-44 | |
| PRK07326 | 237 | PRK07326, PRK07326, short chain dehydrogenase; Pro | 4e-44 | |
| cd05332 | 257 | cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste | 5e-44 | |
| PRK06182 | 273 | PRK06182, PRK06182, short chain dehydrogenase; Val | 3e-43 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-42 | |
| cd05333 | 240 | cd05333, BKR_SDR_c, beta-Keto acyl carrier protein | 5e-42 | |
| cd08939 | 239 | cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine | 1e-41 | |
| cd05350 | 239 | cd05350, SDR_c6, classical (c) SDR, subgroup 6 | 7e-41 | |
| PRK10538 | 248 | PRK10538, PRK10538, malonic semialdehyde reductase | 3e-40 | |
| PRK05565 | 247 | PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-39 | |
| PRK07825 | 273 | PRK07825, PRK07825, short chain dehydrogenase; Pro | 4e-39 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 7e-39 | |
| TIGR01830 | 239 | TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier | 4e-38 | |
| cd05343 | 250 | cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c | 5e-38 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 5e-37 | |
| PRK06181 | 263 | PRK06181, PRK06181, short chain dehydrogenase; Pro | 2e-36 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 3e-36 | |
| cd05362 | 243 | cd05362, THN_reductase-like_SDR_c, tetrahydroxynap | 9e-36 | |
| PRK08263 | 275 | PRK08263, PRK08263, short chain dehydrogenase; Pro | 1e-35 | |
| PRK06179 | 270 | PRK06179, PRK06179, short chain dehydrogenase; Pro | 8e-35 | |
| TIGR01963 | 255 | TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | 1e-34 | |
| PRK07231 | 251 | PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-34 | |
| PRK07666 | 239 | PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-34 | |
| PRK07454 | 241 | PRK07454, PRK07454, short chain dehydrogenase; Pro | 3e-34 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 4e-34 | |
| cd08929 | 226 | cd08929, SDR_c4, classical (c) SDR, subgroup 4 | 5e-34 | |
| PRK12429 | 258 | PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas | 7e-33 | |
| cd05345 | 248 | cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl | 8e-33 | |
| cd05358 | 253 | cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc | 2e-32 | |
| PRK12937 | 245 | PRK12937, PRK12937, short chain dehydrogenase; Pro | 3e-32 | |
| TIGR04316 | 250 | TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben | 1e-31 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 2e-31 | |
| PRK12829 | 264 | PRK12829, PRK12829, short chain dehydrogenase; Pro | 1e-30 | |
| PRK06172 | 253 | PRK06172, PRK06172, short chain dehydrogenase; Pro | 3e-30 | |
| PRK06482 | 276 | PRK06482, PRK06482, short chain dehydrogenase; Pro | 6e-30 | |
| PRK06914 | 280 | PRK06914, PRK06914, short chain dehydrogenase; Pro | 8e-30 | |
| PRK09072 | 263 | PRK09072, PRK09072, short chain dehydrogenase; Pro | 1e-29 | |
| cd05339 | 243 | cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy | 3e-29 | |
| PRK07832 | 272 | PRK07832, PRK07832, short chain dehydrogenase; Pro | 3e-29 | |
| cd05359 | 242 | cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c | 3e-29 | |
| PRK05866 | 293 | PRK05866, PRK05866, short chain dehydrogenase; Pro | 4e-29 | |
| cd05326 | 249 | cd05326, secoisolariciresinol-DH_like_SDR_c, secoi | 4e-29 | |
| TIGR03971 | 265 | TIGR03971, SDR_subfam_1, oxidoreductase, SDR famil | 5e-29 | |
| PRK06841 | 255 | PRK06841, PRK06841, short chain dehydrogenase; Pro | 6e-29 | |
| PRK05872 | 296 | PRK05872, PRK05872, short chain dehydrogenase; Pro | 6e-29 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 9e-29 | |
| cd05360 | 233 | cd05360, SDR_c3, classical (c) SDR, subgroup 3 | 9e-29 | |
| cd05347 | 248 | cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena | 1e-28 | |
| PRK07063 | 260 | PRK07063, PRK07063, short chain dehydrogenase; Pro | 3e-28 | |
| PRK12827 | 249 | PRK12827, PRK12827, short chain dehydrogenase; Pro | 3e-28 | |
| cd05323 | 244 | cd05323, ADH_SDR_c_like, insect type alcohol dehyd | 3e-28 | |
| TIGR01829 | 242 | TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta | 7e-28 | |
| PRK07109 | 334 | PRK07109, PRK07109, short chain dehydrogenase; Pro | 8e-28 | |
| cd05370 | 228 | cd05370, SDR_c2, classical (c) SDR, subgroup 2 | 2e-27 | |
| PRK06949 | 258 | PRK06949, PRK06949, short chain dehydrogenase; Pro | 2e-27 | |
| PRK06171 | 266 | PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro | 3e-27 | |
| PRK08213 | 259 | PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro | 3e-27 | |
| cd05356 | 239 | cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst | 3e-27 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 5e-27 | |
| cd05344 | 253 | cd05344, BKR_like_SDR_like, putative beta-ketoacyl | 5e-27 | |
| cd05338 | 246 | cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena | 6e-27 | |
| PRK12828 | 239 | PRK12828, PRK12828, short chain dehydrogenase; Pro | 8e-27 | |
| cd05341 | 247 | cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta | 1e-26 | |
| cd05364 | 253 | cd05364, SDR_c11, classical (c) SDR, subgroup 11 | 2e-26 | |
| cd05366 | 257 | cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol | 2e-26 | |
| PRK08220 | 252 | PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy | 2e-26 | |
| PRK08226 | 263 | PRK08226, PRK08226, short chain dehydrogenase; Pro | 3e-26 | |
| cd05351 | 244 | cd05351, XR_like_SDR_c, xylulose reductase-like, c | 5e-26 | |
| cd05324 | 225 | cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu | 7e-26 | |
| PRK08251 | 248 | PRK08251, PRK08251, short chain dehydrogenase; Pro | 7e-26 | |
| PRK08643 | 256 | PRK08643, PRK08643, acetoin reductase; Validated | 8e-26 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 8e-26 | |
| PRK06463 | 255 | PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) | 9e-26 | |
| cd05331 | 244 | cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz | 1e-25 | |
| PRK06077 | 252 | PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-25 | |
| PRK12824 | 245 | PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro | 2e-25 | |
| cd09805 | 281 | cd09805, type2_17beta_HSD-like_SDR_c, human 17beta | 2e-25 | |
| PRK13394 | 262 | PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas | 3e-25 | |
| PRK08217 | 253 | PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-25 | |
| cd05327 | 269 | cd05327, retinol-DH_like_SDR_c_like, retinol dehyd | 7e-25 | |
| PRK12936 | 245 | PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-prote | 7e-25 | |
| PRK06935 | 258 | PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog | 8e-25 | |
| cd08930 | 250 | cd08930, SDR_c8, classical (c) SDR, subgroup 8 | 9e-25 | |
| PRK08267 | 260 | PRK08267, PRK08267, short chain dehydrogenase; Pro | 1e-24 | |
| cd05369 | 249 | cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta | 1e-24 | |
| PRK06138 | 252 | PRK06138, PRK06138, short chain dehydrogenase; Pro | 2e-24 | |
| cd08944 | 246 | cd08944, SDR_c12, classical (c) SDR, subgroup 12 | 7e-24 | |
| cd08931 | 227 | cd08931, SDR_c9, classical (c) SDR, subgroup 9 | 8e-24 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 9e-24 | |
| cd08940 | 258 | cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge | 2e-23 | |
| PRK07523 | 255 | PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro | 3e-23 | |
| PRK07060 | 245 | PRK07060, PRK07060, short chain dehydrogenase; Pro | 4e-23 | |
| PRK06398 | 258 | PRK06398, PRK06398, aldose dehydrogenase; Validate | 5e-23 | |
| TIGR02415 | 254 | TIGR02415, 23BDH, acetoin reductases | 7e-23 | |
| cd08936 | 256 | cd08936, CR_SDR_c, Porcine peroxisomal carbonyl re | 7e-23 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 8e-23 | |
| PRK07775 | 274 | PRK07775, PRK07775, short chain dehydrogenase; Pro | 9e-23 | |
| PRK07067 | 257 | PRK07067, PRK07067, sorbitol dehydrogenase; Provis | 1e-22 | |
| PRK07774 | 250 | PRK07774, PRK07774, short chain dehydrogenase; Pro | 1e-22 | |
| PRK07677 | 252 | PRK07677, PRK07677, short chain dehydrogenase; Pro | 2e-22 | |
| cd05368 | 241 | cd05368, DHRS6_like_SDR_c, human DHRS6-like, class | 2e-22 | |
| cd05367 | 241 | cd05367, SPR-like_SDR_c, sepiapterin reductase (SP | 2e-22 | |
| TIGR03325 | 262 | TIGR03325, BphB_TodD, cis-2,3-dihydrobiphenyl-2,3- | 2e-22 | |
| TIGR01832 | 248 | TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena | 3e-22 | |
| cd08933 | 261 | cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl | 5e-22 | |
| PRK08063 | 250 | PRK08063, PRK08063, enoyl-(acyl carrier protein) r | 5e-22 | |
| PLN02253 | 280 | PLN02253, PLN02253, xanthoxin dehydrogenase | 6e-22 | |
| cd09806 | 258 | cd09806, type1_17beta-HSD-like_SDR_c, human estrog | 9e-22 | |
| PRK06114 | 254 | PRK06114, PRK06114, short chain dehydrogenase; Pro | 1e-21 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 1e-21 | |
| PRK12935 | 247 | PRK12935, PRK12935, acetoacetyl-CoA reductase; Pro | 2e-21 | |
| TIGR03206 | 250 | TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy | 2e-21 | |
| cd05348 | 257 | cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydro | 6e-21 | |
| PRK08219 | 227 | PRK08219, PRK08219, short chain dehydrogenase; Pro | 7e-21 | |
| cd05349 | 246 | cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl | 1e-20 | |
| PRK08264 | 238 | PRK08264, PRK08264, short chain dehydrogenase; Val | 1e-20 | |
| PRK06550 | 235 | PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-20 | |
| PRK06124 | 256 | PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro | 2e-20 | |
| PRK08936 | 261 | PRK08936, PRK08936, glucose-1-dehydrogenase; Provi | 2e-20 | |
| PRK05855 | 582 | PRK05855, PRK05855, short chain dehydrogenase; Val | 2e-20 | |
| PRK06200 | 263 | PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydropheny | 2e-20 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 2e-20 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-20 | |
| PRK05650 | 270 | PRK05650, PRK05650, short chain dehydrogenase; Pro | 2e-20 | |
| cd08935 | 271 | cd08935, mannonate_red_SDR_c, putative D-mannonate | 3e-20 | |
| PRK05693 | 274 | PRK05693, PRK05693, short chain dehydrogenase; Pro | 4e-20 | |
| COG3967 | 245 | COG3967, DltE, Short-chain dehydrogenase involved | 5e-20 | |
| cd08942 | 250 | cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy | 7e-20 | |
| PRK12938 | 246 | PRK12938, PRK12938, acetyacetyl-CoA reductase; Pro | 9e-20 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 1e-19 | |
| cd05352 | 252 | cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M | 1e-19 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 2e-19 | |
| PRK05867 | 253 | PRK05867, PRK05867, short chain dehydrogenase; Pro | 2e-19 | |
| PRK05876 | 275 | PRK05876, PRK05876, short chain dehydrogenase; Pro | 2e-19 | |
| cd08937 | 256 | cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa | 5e-19 | |
| cd05363 | 254 | cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), | 5e-19 | |
| PRK08324 | 681 | PRK08324, PRK08324, short chain dehydrogenase; Val | 5e-19 | |
| PRK06194 | 287 | PRK06194, PRK06194, hypothetical protein; Provisio | 5e-19 | |
| cd08945 | 258 | cd08945, PKR_SDR_c, Polyketide ketoreductase, clas | 7e-19 | |
| cd05371 | 252 | cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr | 7e-19 | |
| cd09761 | 242 | cd09761, A3DFK9-like_SDR_c, Clostridium thermocell | 9e-19 | |
| PRK06523 | 260 | PRK06523, PRK06523, short chain dehydrogenase; Pro | 1e-18 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-18 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 2e-18 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-18 | |
| PRK09291 | 257 | PRK09291, PRK09291, short chain dehydrogenase; Pro | 4e-18 | |
| PRK08277 | 278 | PRK08277, PRK08277, D-mannonate oxidoreductase; Pr | 5e-18 | |
| PRK07024 | 257 | PRK07024, PRK07024, short chain dehydrogenase; Pro | 7e-18 | |
| PRK07478 | 254 | PRK07478, PRK07478, short chain dehydrogenase; Pro | 7e-18 | |
| PRK07856 | 252 | PRK07856, PRK07856, short chain dehydrogenase; Pro | 8e-18 | |
| PRK12743 | 256 | PRK12743, PRK12743, oxidoreductase; Provisional | 1e-17 | |
| PRK07062 | 265 | PRK07062, PRK07062, short chain dehydrogenase; Pro | 1e-17 | |
| PRK06123 | 248 | PRK06123, PRK06123, short chain dehydrogenase; Pro | 2e-17 | |
| PRK08085 | 254 | PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro | 2e-17 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 2e-17 | |
| PRK06125 | 259 | PRK06125, PRK06125, short chain dehydrogenase; Pro | 2e-17 | |
| cd08943 | 250 | cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al | 2e-17 | |
| PRK07890 | 258 | PRK07890, PRK07890, short chain dehydrogenase; Pro | 2e-17 | |
| PRK06139 | 330 | PRK06139, PRK06139, short chain dehydrogenase; Pro | 2e-17 | |
| PRK08589 | 272 | PRK08589, PRK08589, short chain dehydrogenase; Val | 3e-17 | |
| PRK07035 | 252 | PRK07035, PRK07035, short chain dehydrogenase; Pro | 3e-17 | |
| cd05325 | 233 | cd05325, carb_red_sniffer_like_SDR_c, carbonyl red | 4e-17 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 4e-17 | |
| PRK07097 | 265 | PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro | 5e-17 | |
| cd05365 | 242 | cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi | 6e-17 | |
| PRK09242 | 257 | PRK09242, PRK09242, tropinone reductase; Provision | 8e-17 | |
| cd09763 | 265 | cd09763, DHRS1-like_SDR_c, human dehydrogenase/red | 2e-16 | |
| PRK08278 | 273 | PRK08278, PRK08278, short chain dehydrogenase; Pro | 2e-16 | |
| cd05330 | 257 | cd05330, cyclohexanol_reductase_SDR_c, cyclohexano | 2e-16 | |
| PRK06198 | 260 | PRK06198, PRK06198, short chain dehydrogenase; Pro | 2e-16 | |
| cd05353 | 250 | cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)- | 2e-16 | |
| cd09762 | 243 | cd09762, HSDL2_SDR_c, human hydroxysteroid dehydro | 3e-16 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 3e-16 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 3e-16 | |
| PRK12742 | 237 | PRK12742, PRK12742, oxidoreductase; Provisional | 3e-16 | |
| cd05340 | 236 | cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li | 3e-16 | |
| PRK12481 | 251 | PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrog | 4e-16 | |
| PLN02780 | 320 | PLN02780, PLN02780, ketoreductase/ oxidoreductase | 6e-16 | |
| PRK06500 | 249 | PRK06500, PRK06500, short chain dehydrogenase; Pro | 7e-16 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 7e-16 | |
| PRK05993 | 277 | PRK05993, PRK05993, short chain dehydrogenase; Pro | 1e-15 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-15 | |
| PRK12823 | 260 | PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1 | 1e-15 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 2e-15 | |
| cd05329 | 251 | cd05329, TR_SDR_c, tropinone reductase-I and II (T | 2e-15 | |
| PRK06113 | 255 | PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydro | 3e-15 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-15 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-15 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-15 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-15 | |
| PRK08265 | 261 | PRK08265, PRK08265, short chain dehydrogenase; Pro | 5e-15 | |
| PRK07069 | 251 | PRK07069, PRK07069, short chain dehydrogenase; Val | 6e-15 | |
| cd05373 | 238 | cd05373, SDR_c10, classical (c) SDR, subgroup 10 | 6e-15 | |
| PRK09730 | 247 | PRK09730, PRK09730, putative NAD(P)-binding oxidor | 7e-15 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 7e-15 | |
| PRK08945 | 247 | PRK08945, PRK08945, putative oxoacyl-(acyl carrier | 1e-14 | |
| PRK08642 | 253 | PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-14 | |
| PRK12384 | 259 | PRK12384, PRK12384, sorbitol-6-phosphate dehydroge | 1e-14 | |
| PRK07074 | 257 | PRK07074, PRK07074, short chain dehydrogenase; Pro | 2e-14 | |
| TIGR02632 | 676 | TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate | 2e-14 | |
| PRK08993 | 253 | PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrog | 2e-14 | |
| TIGR01831 | 239 | TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-prote | 2e-14 | |
| PRK06057 | 255 | PRK06057, PRK06057, short chain dehydrogenase; Pro | 3e-14 | |
| PRK07831 | 262 | PRK07831, PRK07831, short chain dehydrogenase; Pro | 3e-14 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-14 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 4e-14 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 4e-14 | |
| cd09807 | 274 | cd09807, retinol-DH_like_SDR_c, retinol dehydrogen | 7e-14 | |
| PRK08017 | 256 | PRK08017, PRK08017, oxidoreductase; Provisional | 1e-13 | |
| cd05357 | 234 | cd05357, PR_SDR_c, pteridine reductase (PR), class | 2e-13 | |
| PRK05875 | 276 | PRK05875, PRK05875, short chain dehydrogenase; Pro | 2e-13 | |
| PRK09186 | 256 | PRK09186, PRK09186, flagellin modification protein | 4e-13 | |
| PRK12746 | 254 | PRK12746, PRK12746, short chain dehydrogenase; Pro | 6e-13 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 1e-12 | |
| PRK08261 | 450 | PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-12 | |
| PRK06101 | 240 | PRK06101, PRK06101, short chain dehydrogenase; Pro | 2e-12 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 2e-12 | |
| PRK08628 | 258 | PRK08628, PRK08628, short chain dehydrogenase; Pro | 3e-12 | |
| cd05355 | 270 | cd05355, SDR_c1, classical (c) SDR, subgroup 1 | 3e-12 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 6e-12 | |
| PRK12747 | 252 | PRK12747, PRK12747, short chain dehydrogenase; Pro | 6e-12 | |
| cd02266 | 186 | cd02266, SDR, Short-chain dehydrogenases/reductase | 6e-12 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 7e-12 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 8e-12 | |
| PRK07577 | 234 | PRK07577, PRK07577, short chain dehydrogenase; Pro | 9e-12 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 1e-11 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-11 | |
| PRK09135 | 249 | PRK09135, PRK09135, pteridine reductase; Provision | 1e-11 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-11 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-11 | |
| pfam00550 | 66 | pfam00550, PP-binding, Phosphopantetheine attachme | 2e-11 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 8e-11 | |
| PRK06197 | 306 | PRK06197, PRK06197, short chain dehydrogenase; Pro | 9e-11 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-10 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-10 | |
| PRK07806 | 248 | PRK07806, PRK07806, short chain dehydrogenase; Pro | 1e-10 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-10 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-10 | |
| PRK06701 | 290 | PRK06701, PRK06701, short chain dehydrogenase; Pro | 2e-10 | |
| PRK05717 | 255 | PRK05717, PRK05717, oxidoreductase; Validated | 2e-10 | |
| cd08951 | 260 | cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 | 2e-10 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 3e-10 | |
| PRK07814 | 263 | PRK07814, PRK07814, short chain dehydrogenase; Pro | 3e-10 | |
| pfam08659 | 181 | pfam08659, KR, KR domain | 4e-10 | |
| PRK12859 | 256 | PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-prote | 4e-10 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 5e-10 | |
| PRK06947 | 248 | PRK06947, PRK06947, glucose-1-dehydrogenase; Provi | 6e-10 | |
| PRK12745 | 256 | PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote | 7e-10 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 8e-10 | |
| PRK07791 | 286 | PRK07791, PRK07791, short chain dehydrogenase; Pro | 9e-10 | |
| PRK06196 | 315 | PRK06196, PRK06196, oxidoreductase; Provisional | 1e-09 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-09 | |
| cd05322 | 257 | cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehy | 1e-09 | |
| PRK08339 | 263 | PRK08339, PRK08339, short chain dehydrogenase; Pro | 2e-09 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 2e-09 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-09 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 3e-09 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 3e-09 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 3e-09 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 4e-09 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-09 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 5e-09 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 6e-09 | |
| PRK07576 | 264 | PRK07576, PRK07576, short chain dehydrogenase; Pro | 6e-09 | |
| PRK08703 | 239 | PRK08703, PRK08703, short chain dehydrogenase; Pro | 7e-09 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 8e-09 | |
| PRK12748 | 256 | PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-prote | 1e-08 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-08 | |
| PRK06128 | 300 | PRK06128, PRK06128, oxidoreductase; Provisional | 1e-08 | |
| PRK12744 | 257 | PRK12744, PRK12744, short chain dehydrogenase; Pro | 2e-08 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 2e-08 | |
| PRK07792 | 306 | PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-08 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 2e-08 | |
| PRK05786 | 238 | PRK05786, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-08 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 3e-08 | |
| cd05337 | 255 | cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl | 5e-08 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 6e-08 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 9e-08 | |
| TIGR01500 | 256 | TIGR01500, sepiapter_red, sepiapterin reductase | 9e-08 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 1e-07 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 1e-07 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-07 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 2e-07 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 2e-07 | |
| smart00822 | 180 | smart00822, PKS_KR, This enzymatic domain is part | 2e-07 | |
| cd05328 | 250 | cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid de | 3e-07 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-07 | |
| cd11730 | 206 | cd11730, Tthb094_like_SDR_c, Tthb094 and related p | 4e-07 | |
| PRK08340 | 259 | PRK08340, PRK08340, glucose-1-dehydrogenase; Provi | 4e-07 | |
| PRK07041 | 230 | PRK07041, PRK07041, short chain dehydrogenase; Pro | 5e-07 | |
| pfam13561 | 239 | pfam13561, adh_short_C2, Enoyl-(Acyl carrier prote | 6e-07 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 6e-07 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 8e-07 | |
| PRK05854 | 313 | PRK05854, PRK05854, short chain dehydrogenase; Pro | 1e-06 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-06 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 2e-06 | |
| PRK06924 | 251 | PRK06924, PRK06924, short chain dehydrogenase; Pro | 2e-06 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 3e-06 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 4e-06 | |
| cd09810 | 311 | cd09810, LPOR_like_SDR_c_like, light-dependent pro | 5e-06 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 5e-06 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 6e-06 | |
| cd11731 | 198 | cd11731, Lin1944_like_SDR_c, Lin1944 and related p | 6e-06 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 8e-06 | |
| PRK07453 | 322 | PRK07453, PRK07453, protochlorophyllide oxidoreduc | 8e-06 | |
| cd05372 | 250 | cd05372, ENR_SDR, Enoyl acyl carrier protein (ACP) | 1e-05 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-05 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 2e-05 | |
| PRK07023 | 243 | PRK07023, PRK07023, short chain dehydrogenase; Pro | 2e-05 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 2e-05 | |
| smart00823 | 86 | smart00823, PKS_PP, Phosphopantetheine attachment | 2e-05 | |
| PRK09134 | 258 | PRK09134, PRK09134, short chain dehydrogenase; Pro | 2e-05 | |
| cd05274 | 375 | cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt | 3e-05 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 4e-05 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 5e-05 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 6e-05 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 6e-05 | |
| PRK05599 | 246 | PRK05599, PRK05599, hypothetical protein; Provisio | 6e-05 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 7e-05 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 7e-05 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 8e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 9e-05 | |
| cd05361 | 242 | cd05361, haloalcohol_DH_SDR_c-like, haloalcohol de | 1e-04 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 1e-04 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 1e-04 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 1e-04 | |
| PRK07985 | 294 | PRK07985, PRK07985, oxidoreductase; Provisional | 1e-04 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 1e-04 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-04 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 2e-04 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-04 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 2e-04 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 2e-04 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 2e-04 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 3e-04 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 3e-04 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 3e-04 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 4e-04 | |
| TIGR01289 | 314 | TIGR01289, LPOR, light-dependent protochlorophylli | 4e-04 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 5e-04 | |
| cd09808 | 255 | cd09808, DHRS-12_like_SDR_c-like, human dehydrogen | 5e-04 | |
| COG0623 | 259 | COG0623, FabI, Enoyl-[acyl-carrier-protein] | 6e-04 | |
| PRK07424 | 406 | PRK07424, PRK07424, bifunctional sterol desaturase | 6e-04 | |
| PLN02996 | 491 | PLN02996, PLN02996, fatty acyl-CoA reductase | 8e-04 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 0.001 | |
| cd09809 | 284 | cd09809, human_WWOX_like_SDR_c-like, human WWOX (W | 0.001 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 0.001 | |
| TIGR02685 | 267 | TIGR02685, pter_reduc_Leis, pteridine reductase | 0.001 | |
| PRK08177 | 225 | PRK08177, PRK08177, short chain dehydrogenase; Pro | 0.001 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 0.002 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 0.002 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 0.002 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 0.002 | |
| PRK06720 | 169 | PRK06720, PRK06720, hypothetical protein; Provisio | 0.002 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 0.002 | |
| PRK13771 | 334 | PRK13771, PRK13771, putative alcohol dehydrogenase | 0.003 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 0.003 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 0.003 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 0.003 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 0.003 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 0.003 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 0.004 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 0.004 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 0.004 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 0.004 | |
| PRK08303 | 305 | PRK08303, PRK08303, short chain dehydrogenase; Pro | 0.004 |
| >gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 3e-73
Identities = 95/243 (39%), Positives = 138/243 (56%), Gaps = 4/243 (1%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
TL KV +TG+SSGIGE + L GAKVV ARR +RLE L + G+ +
Sbjct: 2 TTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALA--DEIGAGAALALA 59
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
LDVT V+ + + E G IDILVNNAG+ +++ L++W+ MI+ N+KG+L+
Sbjct: 60 LDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNG 119
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+LP M+ R+ GHI+N+ S AG P+ G AVY TK + S LRQE++ I+V
Sbjct: 120 TRAVLPGMV-ERKSGHIINLGSIAGRYPYPGGAVYGATKAAVRAFSLGLRQELAGTGIRV 178
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950
T I G V+T S ++ D + K LT ++I+++++FA QP H +N I
Sbjct: 179 TVISPGLVETTEFSTVRFEGDDERADKVYKGGTALTPEDIAEAVLFAATQPQHVNINEIE 238
Query: 951 IEP 953
I P
Sbjct: 239 IMP 241
|
Length = 246 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 6e-72
Identities = 108/291 (37%), Positives = 161/291 (55%), Gaps = 3/291 (1%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNY 379
VLLTG TG+LG +LL++ L ++C VR + L+RL D + +Y ++L
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60
Query: 380 TDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKN 439
R+ +V DLS LGL + D+Y L+ E+D+IIH A VN + PY L +NVL TK
Sbjct: 61 LSRIKVVVGDLSKPNLGL-SDDDYQELAEEVDVIIHNGANVNWVYPYEELKPANVLGTKE 119
Query: 440 LIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTT-TSGYGQSKIVSEYLV 498
L++ + K+K H+VST S++ + N +D D + +GY QSK V+E L+
Sbjct: 120 LLKLAATGKLKPLHFVSTLSVFSAEEYNALDDEESDDMLESQNGLPNGYIQSKWVAEKLL 179
Query: 499 LNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDF 558
A GLPV+I+R GNI G E N D +LK +LG P L+ +PVD+
Sbjct: 180 REAANRGLPVAIIRPGNIFGDSETGIGNTDDFFWRLLKGCLQLGIYPISGAPLDLSPVDW 239
Query: 559 LTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKW 609
+ +++V+L N +N IY+ +N I + L+ L GY+IK V YE+W
Sbjct: 240 VARAIVKLALNESNEFSIYHLLNPPLISLNDLLDALEEKGYSIKEVSYEEW 290
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 5e-61
Identities = 97/242 (40%), Positives = 129/242 (53%), Gaps = 4/242 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG+SSGIGE + L GA V ARR+DRLE L L+ G +V +LD
Sbjct: 1 LQGKVALVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADELEAEGGKALVLELD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT E V V + LG +DILVNNAG+M +E +W MI+ N+ G+++
Sbjct: 61 VTDEQQVDAAVERTVEALGRLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYTTH 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
LP L R G I+NISS AG AVY TK+ + S LRQEV++R ++V
Sbjct: 121 AALPHHL-LRNKGTIVNISSVAGRVAVRNSAVYNATKFGVNAFSEGLRQEVTERGVRVVV 179
Query: 894 IQAGDVKTELLSHSTD--RDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951
I+ G V TEL H T + IS L ++I+ ++ +A+ P H VN ILI
Sbjct: 180 IEPGTVDTELRDHITHTITKEAYEERISTIRK-LQAEDIAAAVRYAVTAPHHVTVNEILI 238
Query: 952 EP 953
P
Sbjct: 239 RP 240
|
CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 8e-58
Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 7/228 (3%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
VTG+SSGIG + + L GAKVV R + L L +++ G+ + + DV+ E
Sbjct: 1 ALVTGASSGIGRAIARRLAREGAKVVLADRNEEALAEL-AAIEALGGNAVAVQADVSDEE 59
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838
DV+ +V E L E G +DILVNNAG+ +E+ E+W+ +++VN+ GV LP
Sbjct: 60 DVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLTRAALPH 119
Query: 839 MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGD 898
M + G I+NISS AG+RP G A Y +K +EG++ +L E++ I+V + G
Sbjct: 120 MKK-QGGGRIVNISSVAGLRPLPGQAAYAASKAALEGLTRSLALELAPYGIRVNAVAPGL 178
Query: 899 VKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSH 943
V T +L+ + + +++ A+P + T +E++++++F +
Sbjct: 179 VDTPMLAKLGPEE--AEKELAAAIPLGRLGTPEEVAEAVVFLASDEAS 224
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 1e-56
Identities = 108/376 (28%), Positives = 175/376 (46%), Gaps = 28/376 (7%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVD-TKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNY 379
VLLTG TG+LG +LL++ L T+ + C VR + ++RL + + Y L +
Sbjct: 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSY--RLWHEDL 58
Query: 380 T-DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATK 438
+R+ +V DLS LGL + E+ L+ +D I+H A VN + PY+ L +NVL T+
Sbjct: 59 ARERIEVVAGDLSEPRLGL-SDAEWERLAENVDTIVHNGALVNWVYPYSELRGANVLGTR 117
Query: 439 NLIEFSFLNKIKSFHYVSTDSIY-PSTSENFQEDYTVADFDDFMT----TTSGYGQSKIV 493
++ + + K HYVST S+ ED D +T GY QSK V
Sbjct: 118 EVLRLAASGRAKPLHYVSTISVGAAIDLSTVTED------DATVTPPPGLAGGYAQSKWV 171
Query: 494 SEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLE- 552
+E LV A GLPV+IVR G I G+ N D+ ++K LG P E
Sbjct: 172 AELLVREASDRGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYPQSPELTED 231
Query: 553 FTPVDFLTKSLVQLTTNVNNA--NKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWF 610
TPVDF+ +++V L++ + +++ +N P+ + + L GYN++ V +++W
Sbjct: 232 LTPVDFVARAIVVLSSRPAASAGGPVFHVVNPEPVSLDEFLDWLERAGYNLRLVSFDEWL 291
Query: 611 HKLNKRELSE---------PLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETND 661
+L + ++ PL+ L +E + R+T L+ P
Sbjct: 292 QRLEDSDGAKRDPRRYPLLPLLHFLGAGFEEPEFDTRNLDSRSTAEALEGDGIREPSITA 351
Query: 662 HTVRQFLDNLRNSNLL 677
+ +L L+ L
Sbjct: 352 PLLHLYLQYLKEIGFL 367
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 3e-52
Identities = 102/363 (28%), Positives = 152/363 (41%), Gaps = 26/363 (7%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
NVLLTG TG+LG +LL + L + + C VR ++ L RLE Y +L
Sbjct: 2 NVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDEL--SA 59
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNL 440
DR+ +V DL+ LGL + + L+ +D+IIH AA VN + PY+ L +NVL T +
Sbjct: 60 DRVEVVAGDLAEPDLGLSERT-WQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEV 118
Query: 441 IEFSFLNKIKSFHYVST----DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEY 496
+ + K K HYVS+ ++ Y S D + GYG+SK V+E
Sbjct: 119 LRLAATGKPKPLHYVSSISVGETEYYSNFTV-DFDEISPTRNVGQGLAGGYGRSKWVAEK 177
Query: 497 LVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPV 556
LV AG GLPV+I R G I G N D ++ + +LG APD ++ L+ PV
Sbjct: 178 LVREAGDRGLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAPDSEYSLDMLPV 237
Query: 557 DFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKR 616
D + +++V + V A I + I L + T+ I Y W L
Sbjct: 238 DHVARAVVAPSVQV--AEAIAALGAHSDIRFNQL--HMLTHPDEIGLDEYVDWLISL-DI 292
Query: 617 ELSEPLIQILRN----------KGKEYLTVNNSYCQ-RNTLALLKSCDETYPETNDHTVR 665
+ +L N + + + LK + T
Sbjct: 293 AGYPEWLMVLDNSAPALDERQRRASLLPLLAWTNVDLTAPAFPLKGSMPPT--LSFRTAV 350
Query: 666 QFL 668
Sbjct: 351 ALA 353
|
Length = 382 |
| >gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5 | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 6e-51
Identities = 86/241 (35%), Positives = 137/241 (56%), Gaps = 7/241 (2%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL-QNAPGSIIVKKLDVT 775
K + +TG+SSGIGE + GAK++ RR +RL+ L L P ++ +LDV+
Sbjct: 1 KTVLITGASSGIGEATARRFAKAGAKLILTGRRAERLQELADELGAKFPVKVLPLQLDVS 60
Query: 776 IENDVKKVVREVLAELGHIDILVNNAG-VMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
++ + + E IDILVNNAG + ++ LE+W MI+ N+KG+L+
Sbjct: 61 DRESIEAALENLPEEFRDIDILVNNAGLALGLDPAQEADLEDWETMIDTNVKGLLNVTRL 120
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
ILP M+ +R GHI+N+ S AG P+AG VY TK + S LR+++ I+VT I
Sbjct: 121 ILPIMI-ARNQGHIINLGSIAGRYPYAGGNVYCATKAAVRQFSLNLRKDLIGTGIRVTNI 179
Query: 895 QAGDVKTE--LLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952
+ G V+TE L+ D++ DK + + V LT ++I+++I++ +P+H +N I I
Sbjct: 180 EPGLVETEFSLVRFHGDKEKADK--VYEGVEPLTPEDIAETILWVASRPAHVNINDIEIM 237
Query: 953 P 953
P
Sbjct: 238 P 238
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 6e-49
Identities = 75/195 (38%), Positives = 107/195 (54%), Gaps = 4/195 (2%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
KV+ +TG SSGIG L L G +V+A AR D+LE+L L ++ V +LDVT
Sbjct: 1 KVVLITGCSSGIGLALALALAAQGYRVIATARNPDKLESLGELL---NDNLEVLELDVTD 57
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
E +K V+EV+ G ID+LVNNAG F +E+ +EE + VN+ G L L
Sbjct: 58 EESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETSIEEVRELFEVNVFGPLRVTRAFL 117
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
P M + G I+N+SS AG+ P L Y +K +E +S +LR E++ IKVT I+
Sbjct: 118 PLMR-KQGSGRIVNVSSVAGLVPTPFLGPYCASKAALEALSESLRLELAPFGIKVTIIEP 176
Query: 897 GDVKTELLSHSTDRD 911
G V+T ++
Sbjct: 177 GPVRTGFADNAAGSA 191
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 8e-48
Identities = 79/226 (34%), Positives = 122/226 (53%), Gaps = 6/226 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKL 772
+ K +TG+SSGIG +L K L G ++ VARR D+LE L L++ G + V
Sbjct: 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPA 63
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D++ ++++ E+ G ID+LVNNAG F + L+E MI +NI +
Sbjct: 64 DLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLT 123
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+LP M+ R GHI+NI S AG+ P +AVY+ TK F+ S ALR+E+ +KVT
Sbjct: 124 KAVLPGMV-ERGAGHIINIGSAAGLIPTPYMAVYSATKAFVLSFSEALREELKGTGVKVT 182
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFAL 938
+ G +TE D D Y +S VL+ ++++++ + AL
Sbjct: 183 AVCPGPTRTEF----FDAKGSDVYLLSPGELVLSPEDVAEAALKAL 224
|
Length = 265 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 4e-46
Identities = 87/248 (35%), Positives = 124/248 (50%), Gaps = 11/248 (4%)
Query: 324 LTGVTGYLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDR 382
LTG TG+LG LL+K L T ++C VR ++ L+RL +LKY + L +R
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLK-ALER 59
Query: 383 LILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIE 442
+I V DLS LGL + +++ L+ E+D+IIH AA VN + PY+ L +NVL T+ ++
Sbjct: 60 IIPVAGDLSEPNLGL-SDEDFQELAEEVDVIIHNAATVNFVEPYSDLRATNVLGTREVLR 118
Query: 443 FSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDF---MTTTSGYGQSKIVSEYLVL 499
+ K FH+VST + +E D D+ +GY QSK ++E LV
Sbjct: 119 LAKQMKKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNGYTQSKWLAEQLVR 178
Query: 500 NAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI----DWYLEFTP 555
A GLPV I R I G N D L LG PDI D L+ P
Sbjct: 179 EAAG-GLPVVIYRPSIITGESRTGWINGDDFGPRGLLGGAGLGVLPDILGDPDARLDLVP 237
Query: 556 VDFLTKSL 563
VD++ ++
Sbjct: 238 VDYVANAI 245
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 4e-46
Identities = 67/212 (31%), Positives = 107/212 (50%), Gaps = 5/212 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKL 772
L KV VTG+S GIG + + L GA VV E L + G + +
Sbjct: 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG 62
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ V++ V E AE G +DILVNNAG+ L+ + K E+W+ +I+ N+ GV +
Sbjct: 63 DVSDAESVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLT 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ M+ +R G I+NISS G+ G A Y +K + G + +L +E++ R I V
Sbjct: 123 KAVARPMM-KQRSGRIINISSVVGLMGNPGQANYAASKAGVIGFTKSLARELASRGITVN 181
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ G ++T++ + DV + I +P+
Sbjct: 182 AVAPGFIETDMTDALPE-DVKEA--ILAQIPL 210
|
Length = 248 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 2e-45
Identities = 71/246 (28%), Positives = 117/246 (47%), Gaps = 12/246 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRL---ENLKTSLQNAPGSIIVK 770
L+ KV VTG+SSGIG + + L GA+VV ARR + + G
Sbjct: 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAV 62
Query: 771 KLDVT-IENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGV 828
DV+ E V+ +V E G IDILVNNAG+ +E+ E+W+ +I+VN+ G
Sbjct: 63 AADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGA 122
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
LP M + I+NISS AG+ G A Y +K + G++ AL E++ R
Sbjct: 123 FLLTRAALPLM----KKQRIVNISSVAGLGGPPGQAAYAASKAALIGLTKALALELAPRG 178
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSA 945
I+V + G + T + + ++ ++ +P + T +E++ ++ F + S
Sbjct: 179 IRVNAVAPGYIDTPMTAALESAELEALKRLAARIPLGRLGTPEEVAAAVAFLASDEAASY 238
Query: 946 VNSILI 951
+ +
Sbjct: 239 ITGQTL 244
|
Length = 251 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 2e-44
Identities = 129/475 (27%), Positives = 229/475 (48%), Gaps = 52/475 (10%)
Query: 176 LKSSGKLNKEELPKLDSIAQIEL----------DESMFQSQKNIAKIWCKIL--NLYTLD 223
L +GK++K LP D+ AQ+ DE ++++ I +W ++L T+
Sbjct: 811 LNPNGKVDKPALPFPDT-AQLAAVAKNRSASAADEEFTETEREIRDLWLELLPNRPATIS 869
Query: 224 KDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSN------- 276
D++FF++GGHS+ A I ++ ++L++ L + +F PT++ A ++
Sbjct: 870 PDDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLKKGEELADE 929
Query: 277 ETLKLDLIHEIDVNSY----KSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLG 332
+++ + Y K+L ++L + +L+++ V LTG TG+LG
Sbjct: 930 GDSEIEEEETVLELDYAKDAKTLVDSLPKS---YPSRKELDASTPI--TVFLTGATGFLG 984
Query: 333 IHLLQKFL-----VDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVK 387
+L+ L + K +F VR + L+RL Y + + + R+ +V
Sbjct: 985 SFILRDLLTRRSNSNFK--VFAHVRAKSEEAGLERLRKTGTTYGIWDE--EWASRIEVVL 1040
Query: 388 SDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLN 447
DLS E GL + +++ L+ E+D+IIH A V+ + PY+ L +NV+ T N++
Sbjct: 1041 GDLSKEKFGL-SDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEG 1099
Query: 448 KIKSFHYVSTDSI-----YPSTSENFQED--YTVADFDDFMTT----TSGYGQSKIVSEY 496
K K F +VS+ S Y + S+ + + + DD M + +GYGQSK V+EY
Sbjct: 1100 KAKQFSFVSSTSALDTEYYVNLSDELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEY 1159
Query: 497 LVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPV 556
++ AG+ GL IVR G + G + N D L +LK +LG P+I+ + PV
Sbjct: 1160 IIREAGKRGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCIQLGLIPNINNTVNMVPV 1219
Query: 557 DFLTKSLVQLTTNVNNANKIYNF-INTNP-IHIKTLVSVLNTYGYNIKTVPYEKW 609
D + + +V N +++ + +P I + L TYGY+++ V Y W
Sbjct: 1220 DHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTYGYDVEIVDYVHW 1274
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 3e-44
Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 8/205 (3%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
K +TG SSG G L + + G +VV R + + P + + LDVT
Sbjct: 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL---HPDRALARLLDVT 60
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+ + VV + A G ID+LVNNAG + +E+ L E VN+ G + +
Sbjct: 61 DFDAIDAVVADAEATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAV 120
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
LP M +RR GHI+NI+S G+ G+ Y G+K+ +EGIS +L +EV+ I VT ++
Sbjct: 121 LPGM-RARRRGHIVNITSMGGLITMPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVE 179
Query: 896 AGDVKTELLSHS---TDRDVVDKYD 917
G +T+ S T R + YD
Sbjct: 180 PGSFRTDWAGRSMVRTPR-SIADYD 203
|
Length = 277 |
| >gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 4e-44
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 12/242 (4%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
+L KV +TG S GIG + + L+ G KV AR LE L N + +
Sbjct: 2 MSLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAA 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV E DV++ V ++A G +D+L+ NAGV +F +E+ EEW +I+ N+ G +
Sbjct: 62 -DVRDEADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYT 120
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
I +P++ R G+I+NISS AG FAG A Y +K+ + G S A ++ IKV
Sbjct: 121 IKAAVPAL--KRGGGYIINISSLAGTNFFAGGAAYNASKFGLVGFSEAAMLDLRQYGIKV 178
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951
+ I G V T H+ D + I ++I+Q ++ L P + + I +
Sbjct: 179 STIMPGSVATHFNGHTPSEK--DAWKIQP-------EDIAQLVLDLLKMPPRTLPSKIEV 229
Query: 952 EP 953
P
Sbjct: 230 RP 231
|
Length = 237 |
| >gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 5e-44
Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 2/191 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTS-LQNAPGSIIVKKL 772
L KV+ +TG+SSGIGE+L L LGA++V ARR +RLE +K+ L+ S V L
Sbjct: 1 LQGKVVIITGASSGIGEELAYHLARLGARLVLSARREERLEEVKSECLELGAPSPHVVPL 60
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D++ D ++VV E L G +DIL+NNAG+ +L ++ ++ VN G +
Sbjct: 61 DMSDLEDAEQVVEEALKLFGGLDILINNAGISMRSLFHDTSIDVDRKIMEVNYFGPVALT 120
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LP ++ R G I+ +SS AG Y +K+ ++G +LR E+S+ NI VT
Sbjct: 121 KAALPHLI-ERSQGSIVVVSSIAGKIGVPFRTAYAASKHALQGFFDSLRAELSEPNISVT 179
Query: 893 CIQAGDVKTEL 903
+ G + T +
Sbjct: 180 VVCPGLIDTNI 190
|
Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 3e-43
Identities = 74/189 (39%), Positives = 98/189 (51%), Gaps = 11/189 (5%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
KV VTG+SSGIG+ + L G V ARR+D++E+L A + LDVT
Sbjct: 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL------ASLGVHPLSLDVT 56
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
E +K V ++AE G ID+LVNNAG + +E ++E VN+ G +
Sbjct: 57 DEASIKAAVDTIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLV 116
Query: 836 LPSMLHSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
LP M R G I+NISS G P A Y TK+ +EG S ALR EV+ I V
Sbjct: 117 LPHMRAQRS-GRIINISSMGGKIYTPLG--AWYHATKFALEGFSDALRLEVAPFGIDVVV 173
Query: 894 IQAGDVKTE 902
I+ G +KTE
Sbjct: 174 IEPGGIKTE 182
|
Length = 273 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 1e-42
Identities = 69/212 (32%), Positives = 107/212 (50%), Gaps = 4/212 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+L K VTG+S GIG + L GAKVV + E L L+ A G V
Sbjct: 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVF 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ E V+ ++ + G +DILVNNAG+ L+ + E+W+ +I+VN+ G + +
Sbjct: 62 DVSDEAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVV 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LP M+ +R G I+NISS +GV G Y+ K + G + AL E++ R I V
Sbjct: 122 RAALPPMIKARY-GRIVNISSVSGVTGNPGQTNYSAAKAGVIGFTKALALELASRGITVN 180
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ G + T++ + K +I K +P+
Sbjct: 181 AVAPGFIDTDMTEGLPEE---VKAEILKEIPL 209
|
Length = 246 |
| >gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 5e-42
Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 10/211 (4%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
KV VTG+S GIG + L GAKV R + ++ G+ + DV+
Sbjct: 1 KVALVTGASRGIGRAIALRLAAEGAKVAVTDRSEEAAAETVEEIKALGGNAAALEADVSD 60
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
V+ +V +V AE G +DILVNNAG+ L+ + E+W+A+INVN+ GV + ++
Sbjct: 61 REAVEALVEKVEAEFGPVDILVNNAGITRDNLLMRMSEEDWDAVINVNLTGVFNVTQAVI 120
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
+M+ RR G I+NISS G+ G A Y +K + G + +L +E++ R I V +
Sbjct: 121 RAMI-KRRSGRIINISSVVGLIGNPGQANYAASKAGVIGFTKSLAKELASRGITVNAVAP 179
Query: 897 GDVKTELLSHSTDR---DVVDKYDISKAVPV 924
G + T++ TD V +K I K +P+
Sbjct: 180 GFIDTDM----TDALPEKVKEK--ILKQIPL 204
|
This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240 |
| >gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 1e-41
Identities = 60/190 (31%), Positives = 101/190 (53%), Gaps = 5/190 (2%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ----NAPGSIIVKKL 772
K + +TG SSGIG+ L K+LV GA V+ VAR +LE ++ + +
Sbjct: 2 KHVLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEAVEEIEAEANASGQKVSYISA 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D++ +V++ + + + G D++VN AG+ L E EE+ ++VN G L+
Sbjct: 62 DLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFEDLTAEEFERGMDVNYFGSLNVA 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+LP M +RPGHI+ +SS A + G + Y +K+ + G++ +LRQE+ NI+V+
Sbjct: 122 HAVLPLMK-EQRPGHIVFVSSQAALVGIYGYSAYCPSKFALRGLAESLRQELKPYNIRVS 180
Query: 893 CIQAGDVKTE 902
+ D T
Sbjct: 181 VVYPPDTDTP 190
|
These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239 |
| >gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6 | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 7e-41
Identities = 69/220 (31%), Positives = 113/220 (51%), Gaps = 12/220 (5%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
+ +TG+SSGIG L ++ G V ARR DRL+ LK L N S+ V+ LDVT E
Sbjct: 1 VLITGASSGIGRALAREFAKAGYNVALAARRTDRLDELKAELLNPNPSVEVEILDVTDEE 60
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838
+ V+ E+ AELG +D+++ NAGV T + + + I+ N+ G + LP
Sbjct: 61 RNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFKAFRETIDTNLLGAAAILEAALPQ 120
Query: 839 MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGD 898
++ GH++ ISS A +R G A Y+ +K + ++ +LR +V R I+VT I G
Sbjct: 121 FR-AKGRGHLVLISSVAALRGLPGAAAYSASKAALSSLAESLRYDVKKRGIRVTVINPGF 179
Query: 899 VKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFAL 938
+ T L T + +++ ++ ++ I A+
Sbjct: 180 IDTPL----TAN-------MFTMPFLMSVEQAAKRIYKAI 208
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 3e-40
Identities = 78/241 (32%), Positives = 134/241 (55%), Gaps = 12/241 (4%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
++ VTG+++G GE + + + G KV+A RR +RL+ LK L + + + +LDV
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDN---LYIAQLDVRNR 58
Query: 778 NDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+++++ + AE +ID+LVNNAG+ + K +E+W MI+ N KG+++ +L
Sbjct: 59 AAIEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVL 118
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
P M+ R GHI+NI S AG P+AG VY TK F+ S LR ++ ++VT I+
Sbjct: 119 PGMV-ERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEP 177
Query: 897 GDVKTELLSH---STDRDVVDK-YDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952
G V S+ D +K Y + A LT +++S+++ + P+H +N++ +
Sbjct: 178 GLVGGTEFSNVRFKGDDGKAEKTYQNTVA---LTPEDVSEAVWWVATLPAHVNINTLEMM 234
Query: 953 P 953
P
Sbjct: 235 P 235
|
Length = 248 |
| >gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-39
Identities = 70/202 (34%), Positives = 109/202 (53%), Gaps = 8/202 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-AVARRIDRLENLKTSLQNAPGSIIVKKL 772
L KV VTG+S GIG + + L GAKVV A + + L ++ G I K
Sbjct: 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKA 62
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ E DV+ +V +++ + G IDILVNNAG+ F L+ EEW+ +I+VN+ GV+
Sbjct: 63 DVSSEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLT 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGL---AVYTGTKYFIEGISGALRQEVSDRNI 889
LP M+ R+ G I+NISS + G +Y+ +K + + AL +E++ I
Sbjct: 123 RYALPYMI-KRKSGVIVNISS---IWGLIGASCEVLYSASKGAVNAFTKALAKELAPSGI 178
Query: 890 KVTCIQAGDVKTELLSHSTDRD 911
+V + G + TE+ S ++ D
Sbjct: 179 RVNAVAPGAIDTEMWSSFSEED 200
|
Length = 247 |
| >gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 4e-39
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 16/229 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKL 772
L KV+ +TG + GIG + L LGA+V I D E L G ++ L
Sbjct: 3 LRGKVVAITGGARGIGLATARALAALGARVA-----IGDLDEALAKETAAELGLVVGGPL 57
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DVT + V A+LG ID+LVNNAGVM +++VN+ GV+
Sbjct: 58 DVTDPASFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGS 117
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P M+ R GH++N++S AG P G+A Y +K+ + G + A R E+ + V+
Sbjct: 118 KLAAPRMVPRGR-GHVVNVASLAGKIPVPGMATYCASKHAVVGFTDAARLELRGTGVHVS 176
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941
+ V TEL++ + +K + ++++ +I+ + +P
Sbjct: 177 VVLPSFVNTELIAGTGG---------AKGFKNVEPEDVAAAIVGTVAKP 216
|
Length = 273 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 7e-39
Identities = 156/659 (23%), Positives = 260/659 (39%), Gaps = 114/659 (17%)
Query: 321 NVLLTGVTGYLGIHLLQKFL-VDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNY 379
+TG TG++G L+ + L + T+ VR L RLE + +
Sbjct: 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQS----LSRLEALAAYWG-------- 49
Query: 380 TDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKN 439
DR++ + DL+ LGL D ++ +ID ++H AA +L A +NV T+N
Sbjct: 50 ADRVVPLVGDLTEPGLGLSEAD--IAELGDIDHVVHLAAIYDLTADEEAQRAANVDGTRN 107
Query: 440 LIEFSFLNKIKSFHYVSTDSI-----YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVS 494
++E + + +FH+VS SI Y F+ED DFD+ + Y ++K +
Sbjct: 108 VVELAERLQAATFHHVS--SIAVAGDYEGV---FRED----DFDEGQGLPTPYHRTKFEA 158
Query: 495 EYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDW----- 549
E LV GLP + R + G + +D Y K + +L P W
Sbjct: 159 EKLVREEC--GLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLP--SWLPMVG 214
Query: 550 ----YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVP 605
PVD++ +L L + ++ + P + + N + P
Sbjct: 215 PDGGRTNIVPVDYVADALDHLMHKDGRDGQTFHLTDPKPQ---RVGDIYNAFARAAGAPP 271
Query: 606 YEKWFHKLNKRELSEPLIQ-----------ILRNKG--KEYLTVNN---SYCQRNTLALL 649
+ F L ++ PL+ + G E L N ++ R T A L
Sbjct: 272 DARLFGFL-PGFVAAPLLAALGPVRRLRNAVATQLGIPPEVLDFVNYPTTFDSRETRAAL 330
Query: 650 KSCDETYPETNDHTVR------QFLDNLRNSNLLPNVPLENNNSTEYTDTNKQGISISNA 703
K P + R + LD R PL
Sbjct: 331 KGSGIEVPRLASYAPRLWDYWERHLDPDRARRRDLRGPLVG------------------- 371
Query: 704 GTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA 763
KV+ +TG+SSGIG + GA V VAR + L+ L ++
Sbjct: 372 -------------KVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK 418
Query: 764 PGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAG-VMYFTLMEKY-KLEEWNAMI 821
G+ D+T V V+++LAE GH+D LVNNAG + ++ + ++ +
Sbjct: 419 GGTAHAYTCDLTDSAAVDHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTM 478
Query: 822 NVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG-LAVYTGTKYFIEGISGAL 880
VN G + I +LP M RR GH++N+SS GV+ A + Y +K ++ S
Sbjct: 479 AVNYFGAVRLILGLLPHMR-ERRFGHVVNVSS-IGVQTNAPRFSAYVASKAALDAFSDVA 536
Query: 881 RQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALL 939
E I T I V+T +++ + +Y+ VP ++ +E + ++ A++
Sbjct: 537 ASETLSDGITFTTIHMPLVRTPMIAPT------KRYN---NVPTISPEEAADMVVRAIV 586
|
Length = 657 |
| >gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 4e-38
Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 2/184 (1%)
Query: 720 FVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-RLENLKTSLQNAPGSIIVKKLDVTIEN 778
VTG+S GIG + L GAKV+ R + E + L+ + DV+
Sbjct: 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDRE 61
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838
DVK VV E+ ELG IDILVNNAG+ L+ + K E+W+A+I+ N+ GV + +L
Sbjct: 62 DVKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRI 121
Query: 839 MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGD 898
M+ R G I+NISS G+ AG A Y +K + G + +L +E++ RNI V + G
Sbjct: 122 MIKQRS-GRIINISSVVGLMGNAGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGF 180
Query: 899 VKTE 902
+ T+
Sbjct: 181 IDTD 184
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-38
Identities = 71/246 (28%), Positives = 123/246 (50%), Gaps = 6/246 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKL 772
+V VTG+S GIG + + LV G KVV ARR+D++E L Q+A ++ +
Sbjct: 4 WRGRVALVTGASVGIGAAVARALVQHGMKVVGCARRVDKIEALAAECQSAGYPTLFPYQC 63
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D++ E + + + + +D+ +NNAG+ + K E W M +VN+ + C
Sbjct: 64 DLSNEEQILSMFSAIRTQHQGVDVCINNAGLARPEPLLSGKTEGWKEMFDVNVLALSICT 123
Query: 833 GNILPSMLHSRRP-GHILNISSNAGVR--PFAGLAVYTGTKYFIEGISGALRQEV--SDR 887
SM GHI+NI+S +G R P + Y TK+ + ++ LRQE+ +
Sbjct: 124 REAYQSMKERNVDDGHIININSMSGHRVPPVSVFHFYAATKHAVTALTEGLRQELREAKT 183
Query: 888 NIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVN 947
+I+ T I G V+TE D D +++P L ++++ ++++ L P H ++
Sbjct: 184 HIRATSISPGLVETEFAFKLHDNDPEKAAATYESIPCLKPEDVANAVLYVLSTPPHVQIH 243
Query: 948 SILIEP 953
IL+ P
Sbjct: 244 DILLRP 249
|
Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 5e-37
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 13/230 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +V VTG++ GIG + L GA+V+ V D ++ A G +++D
Sbjct: 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVD 63
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V +K V + + G +DILV NAG+ T + E+W +I+VN+ G
Sbjct: 64 VRDRAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQ 123
Query: 834 NILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LP+++ + G I+ SS AG R + GLA Y +K + G + AL E++ RNI V
Sbjct: 124 AALPALIRAGG-GRIVLTSSVAGPRVGYPGLAHYAASKAGLVGFTRALALELAARNITVN 182
Query: 893 CIQAGDVKTELLSHSTDRDVVDKY---DISKAVPV---LTTKEISQSIIF 936
+ G V T + ++ D I+ A+P+ ++I+ +++F
Sbjct: 183 SVHPGGVDTPMA-----GNLGDAQWAEAIAAAIPLGRLGEPEDIAAAVLF 227
|
Length = 251 |
| >gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-36
Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 10/229 (4%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
KV+ +TG+S GIG L L GA++V AR RL +L L + G +V DV+
Sbjct: 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVS 60
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
++++ +A G IDILVNNAG+ M+ E L + ++ VN G ++C
Sbjct: 61 DAEACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHA 120
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
LP + SR G I+ +SS AG+ + Y +K+ + G +LR E++D + VT +
Sbjct: 121 ALPHLKASR--GQIVVVSSLAGLTGVPTRSGYAASKHALHGFFDSLRIELADDGVAVTVV 178
Query: 895 QAGDVKTELLSHSTDRD----VVDKYDISKAVPVLTTKEISQSIIFALL 939
G V T++ + D D SK +++ +E +++I+ A+
Sbjct: 179 CPGFVATDIRKRALDGDGKPLGKSPMQESK---IMSAEECAEAILPAIA 224
|
Length = 263 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-36
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 2/226 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA K VTG++ G+G + L GA V L +L+ A G D
Sbjct: 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAAD 64
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ V++ A LG +D LVNNAG+ + ++ W+A++NVN++G +
Sbjct: 65 LADPASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLR 124
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
LP + S R G I+N++S+ + L Y +K + G++ +L +E+ R I V
Sbjct: 125 AALPHLRDSGR-GRIVNLASDTALWGAPKLGAYVASKGAVIGMTRSLARELGGRGITVNA 183
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVL-TTKEISQSIIFAL 938
I G TE ++ + Y +A+ L +++ +++F L
Sbjct: 184 IAPGLTATEATAYVPADERHAYYLKGRALERLQVPDDVAGAVLFLL 229
|
Length = 250 |
| >gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 9e-36
Identities = 62/210 (29%), Positives = 91/210 (43%), Gaps = 9/210 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVA-VARRIDRLENLKTSLQNAPGSIIVKKL 772
LA KV VTG+S GIG + K L GA VV A E + ++ A G I +
Sbjct: 1 LAGKVALVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIEAAGGKAIAVQA 60
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ + V ++ G +DILVNNAGVM + + EE++ M VN KG +
Sbjct: 61 DVSDPSQVARLFDAAEKAFGGVDILVNNAGVMLKKPIAETSEEEFDRMFTVNTKGAFFVL 120
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ R G I+NISS+ Y G+K +E + L +E+ R I V
Sbjct: 121 QEAAKRL---RDGGRIINISSSLTAAYTPNYGAYAGSKAAVEAFTRVLAKELGGRGITVN 177
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAV 922
+ G V T++ + +
Sbjct: 178 AVAPGPVDTDMF-----YAGKTEEAVEGYA 202
|
1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 1e-35
Identities = 68/195 (34%), Positives = 98/195 (50%), Gaps = 4/195 (2%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
KV F+TG+S G G + + G +VVA AR L +L + ++ LDVT
Sbjct: 3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLA---EKYGDRLLPLALDVT 59
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
V V + G +DI+VNNAG F ++E+ E A I+ N G L +
Sbjct: 60 DRAAVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAV 119
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
LP L +R GHI+ ISS G+ F +Y +K+ +EG+S AL QEV++ IKVT ++
Sbjct: 120 LP-YLREQRSGHIIQISSIGGISAFPMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVE 178
Query: 896 AGDVKTELLSHSTDR 910
G T+ S R
Sbjct: 179 PGGYSTDWAGTSAKR 193
|
Length = 275 |
| >gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 8e-35
Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 10/208 (4%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+KV VTG+SSGIG + L G +V +R R + PG +++ LDVT
Sbjct: 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI-------PGVELLE-LDVT 55
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+ V+ V EV+A G ID+LVNNAGV E+ + + A+ + N+ G+L +
Sbjct: 56 DDASVQAAVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAV 115
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
LP M ++ G I+NISS G P +A+Y +K+ +EG S +L EV I+V+ ++
Sbjct: 116 LPHM-RAQGSGRIINISSVLGFLPAPYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVE 174
Query: 896 AGDVKTELLSHSTDRD-VVDKYDISKAV 922
KT +++ + D + +YD +AV
Sbjct: 175 PAYTKTNFDANAPEPDSPLAEYDRERAV 202
|
Length = 270 |
| >gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 1e-34
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 13/232 (5%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
K VTG++SGIG + + L GA VV + E +A GS+I DVT
Sbjct: 2 KTALVTGAASGIGLAIARALAAAGANVVVNDFGEEGAEAAAKVAGDAGGSVIYLPADVTK 61
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
E+++ ++ AE G +DILVNNAG+ + +E++ E+W+ +I V + H I L
Sbjct: 62 EDEIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAVMLTSAFHTIRAAL 121
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
P M G I+NI+S G+ + Y K+ + G++ L EV++ I V I
Sbjct: 122 PHMKKQGW-GRIINIASAHGLVASPFKSAYVAAKHGLIGLTKVLALEVAEHGITVNAICP 180
Query: 897 GDVKTELL---------SHSTDRDVVDKYDISKAVP---VLTTKEISQSIIF 936
G V+T L+ + + V + + K P +T E++++ ++
Sbjct: 181 GYVRTPLVEKQIADQAKTRGIPEEQVIREVMLKGQPTKRFVTVDEVAETALY 232
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255 |
| >gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 3/194 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG+SSGIGE + + GA+VV R + E + + +I V D
Sbjct: 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAV-AAD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCI 832
V+ E DV+ V L G +DILVNNAG + + E++ + VN+K
Sbjct: 62 VSDEADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWT 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+P+M G I+N++S AG+RP GL Y +K + ++ AL E+ I+V
Sbjct: 122 QAAVPAMRG-EGGGAIVNVASTAGLRPRPGLGWYNASKGAVITLTKALAAELGPDKIRVN 180
Query: 893 CIQAGDVKTELLSH 906
+ V+T LL
Sbjct: 181 AVAPVVVETGLLEA 194
|
Length = 251 |
| >gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-34
Identities = 62/190 (32%), Positives = 102/190 (53%), Gaps = 1/190 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TG+ GIG + L G V +AR + L+ + ++ +++ D
Sbjct: 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATAD 64
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ +V + ++ ELG IDIL+NNAG+ F + EW +I VN+ GV +
Sbjct: 65 VSDYEEVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATR 124
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+LPSM+ R+ G I+NISS AG + A + Y+ +K+ + G++ +L QEV NI+VT
Sbjct: 125 AVLPSMI-ERQSGDIINISSTAGQKGAAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTA 183
Query: 894 IQAGDVKTEL 903
+ V T++
Sbjct: 184 LTPSTVATDM 193
|
Length = 239 |
| >gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-34
Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 10/228 (4%)
Query: 720 FVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEND 779
+TG+SSGIG+ G + VAR D LE L L++ +D++
Sbjct: 10 LITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEA 69
Query: 780 VKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSM 839
+ + E+L + G D+L+NNAG+ Y + + L +W +I +N+ V C +LP M
Sbjct: 70 IAPGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGM 129
Query: 840 LHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDV 899
+R G I+N+SS A F Y +K + + L +E I+V I G V
Sbjct: 130 -RARGGGLIINVSSIAARNAFPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAV 188
Query: 900 KTELLSHSTDRDVVD-KYDISKAVPVLTTKEISQSIIFALLQPSHSAV 946
T L D + V +D S +L+ ++++Q+I+ P SAV
Sbjct: 189 NTPLW----DTETVQADFDRSA---MLSPEQVAQTILHLAQLPP-SAV 228
|
Length = 241 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 4e-34
Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 2/191 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKK 771
+L +V VTG++ G+G + L GA VV R + E L +++ +
Sbjct: 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQ 62
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DVT + ++ V + G IDILVNNAG+ + +EW+ +I+VN+ GV H
Sbjct: 63 ADVTDKAALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHL 122
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ ++P M +R G I+NISS AG+ + G + Y K + G++ AL +E+++ I V
Sbjct: 123 LRAVVPPMRK-QRGGRIVNISSVAGLPGWPGRSNYAAAKAGLVGLTKALARELAEYGITV 181
Query: 892 TCIQAGDVKTE 902
+ GD+ T+
Sbjct: 182 NMVAPGDIDTD 192
|
Length = 249 |
| >gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4 | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 5e-34
Identities = 71/237 (29%), Positives = 112/237 (47%), Gaps = 15/237 (6%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
K VTG+S GIGE + L G +V AR RL ++ DV
Sbjct: 1 KAALVTGASRGIGEATARLLHAEGYRVGICARDEARLAAA---AAQELEGVLGLAGDVRD 57
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
E DV++ V + G +D LVNNAGV +E+ EEW +++ N+ G +CI
Sbjct: 58 EADVRRAVDAMEEAFGGLDALVNNAGVGVMKPVEELTPEEWRLVLDTNLTGAFYCIHKAA 117
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
P++L R G I+N+ S AG F G A Y +K+ + G+S A ++ + NI+V +
Sbjct: 118 PALL-RRGGGTIVNVGSLAGKNAFKGGAAYNASKFGLLGLSEAAMLDLREANIRVVNVMP 176
Query: 897 GDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
G V T + L ++++Q+++FAL P+ + V+ I + P
Sbjct: 177 GSVDTGFAGSPEGQAW-----------KLAPEDVAQAVLFALEMPARALVSRIELRP 222
|
This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226 |
| >gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 7e-33
Identities = 61/191 (31%), Positives = 92/191 (48%), Gaps = 1/191 (0%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
L KV VTG++SGIG ++ L GAKVV + +LQ A G I +
Sbjct: 1 MLKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAM 60
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DVT E + + + G +DILVNNAG+ + +E + E+W MI + + G
Sbjct: 61 DVTDEEAINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTT 120
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LP M ++ G I+N++S G+ AG A Y K+ + G++ + E + + V
Sbjct: 121 KAALPIM-KAQGGGRIINMASVHGLVGSAGKAAYVSAKHGLIGLTKVVALEGATHGVTVN 179
Query: 893 CIQAGDVKTEL 903
I G V T L
Sbjct: 180 AICPGYVDTPL 190
|
Length = 258 |
| >gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 8e-33
Identities = 67/195 (34%), Positives = 103/195 (52%), Gaps = 9/195 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG+ SG GE + + GA+VV D E + + I + D
Sbjct: 3 LEGKVAIVTGAGSGFGEGIARRFAQEGARVVIADINADGAER---VAADIGEAAIAIQAD 59
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCI 832
VT DV+ +V L++ G +DILVNNAG+ + M + EE++ + VN+K +
Sbjct: 60 VTKRADVEAMVEAALSKFGRLDILVNNAGITHRNKPMLEVDEEEFDRVFAVNVKSIYLSA 119
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
++P M + G I+NI+S AG+RP GL Y +K ++ + A+ E++ RNI+V
Sbjct: 120 QALVPHMEE-QGGGVIINIASTAGLRPRPGLTWYNASKGWVVTATKAMAVELAPRNIRVN 178
Query: 893 CIQ--AGDVKTELLS 905
C+ AG+ T LLS
Sbjct: 179 CLCPVAGE--TPLLS 191
|
This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248 |
| >gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 15/233 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKL 772
L KV VTG+SSGIG+ + L T GA VV R + D E + ++ G I +
Sbjct: 1 LKGKVALVTGASSGIGKAIAIRLATAGANVVVNYRSKEDAAEEVVEEIKAVGGKAIAVQA 60
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ E DV + + + E G +DILVNNAG+ + LE+WN +I+VN+ G C
Sbjct: 61 DVSKEEDVVALFQSAIKEFGTLDILVNNAGLQGDASSHEMTLEDWNKVIDVNLTGQFLCA 120
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ S+ G I+N+SS P+ G Y +K ++ ++ L QE + + I+V
Sbjct: 121 REAIKRFRKSKIKGKIINMSSVHEKIPWPGHVNYAASKGGVKMMTKTLAQEYAPKGIRVN 180
Query: 893 CIQAGDVKTE--------------LLSHSTDRDVVDKYDISKAVPVLTTKEIS 931
I G + T LLS + + +I+ A L + E S
Sbjct: 181 AIAPGAINTPINAEAWDDPEQRADLLSLIPMGRIGEPEEIAAAAAWLASDEAS 233
|
GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 3e-32
Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 10/240 (4%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKK 771
TL+NKV VTG+S GIG + + L G V V A + L ++ A G I +
Sbjct: 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQ 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV V ++ G ID+LVNNAGVM + + LE+++ I N++G
Sbjct: 62 ADVADAAAVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVV 121
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ + + G I+N+S++ P G Y +K +EG+ L E+ R I V
Sbjct: 122 LREAARHL---GQGGRIINLSTSVIALPLPGYGPYAASKAAVEGLVHVLANELRGRGITV 178
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIFALLQPSHSAVNS 948
+ G V TEL + + +D+ ++ P+ T +EI+ ++ F L P + VN
Sbjct: 179 NAVAPGPVATELFFNGKSAEQIDQ--LAGLAPLERLGTPEEIAAAVAF-LAGPDGAWVNG 235
|
Length = 245 |
| >gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Query: 721 VTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDV 780
VTG++ GIG + + L GA+V AV R ++L L L+ KLDV V
Sbjct: 3 VTGAAQGIGYAVARALAEAGARVAAVDRNFEQLLELVADLRRYGYPFATYKLDVADSAAV 62
Query: 781 KKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSML 840
+VV+ + E G ID+LVN AG++ ++ E+W A VN GV + + P M
Sbjct: 63 DEVVQRLEREYGPIDVLVNVAGILRLGAIDSLSDEDWQATFAVNTFGVFNVSQAVSPRMK 122
Query: 841 HSRRPGHILNISSNAGVRPFAGLAVYTGTK 870
RR G I+ + SNA P G+A Y +K
Sbjct: 123 -RRRSGAIVTVGSNAANVPRMGMAAYAASK 151
|
Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-31
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 8/170 (4%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR---IDRLENLKTSLQNAPGSIIVKKLD 773
+ +TG + G+G L + L GA+ + + R L L+ + V D
Sbjct: 1 GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELEALGAEVTVAACD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V + + ++ + A LG +D +V+NAGV+ +E+ E + ++ + G +
Sbjct: 61 VADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAWNLHE 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQE 883
G + SS AGV G A Y ++ ++ R E
Sbjct: 121 LTRD-----LDLGAFVLFSSVAGVLGSPGQANYAAANAALDALAEHRRAE 165
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 3/190 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L + VTG +SGIG + + GA+V L L A + V D
Sbjct: 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATV--AD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTL-MEKYKLEEWNAMINVNIKGVLHCI 832
V V++V + G +D+LVNNAG+ T +++ E+W + VN+ G +
Sbjct: 67 VADPAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFA 126
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+P + S G I+ +SS AG + G Y +K+ + G+ +L E+ I+V
Sbjct: 127 RAAVPLLKASGHGGVIIALSSVAGRLGYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVN 186
Query: 893 CIQAGDVKTE 902
I G V+
Sbjct: 187 AILPGIVRGP 196
|
Length = 264 |
| >gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-30
Identities = 61/232 (26%), Positives = 115/232 (49%), Gaps = 13/232 (5%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
T + KV VTG ++GIG GAKVV R E ++ A G +
Sbjct: 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVAC 63
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKL-----EEWNAMINVNIKG 827
DVT + +VK +V + +A G +D NNAG+ +E+ +L E++A++ VN+KG
Sbjct: 64 DVTRDAEVKALVEQTIAAYGRLDYAFNNAGIE----IEQGRLAEGSEAEFDAIMGVNVKG 119
Query: 828 VLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
V C+ +P ML ++ G I+N +S AG+ +++Y +K+ + G++ + E + +
Sbjct: 120 VWLCMKYQIPLML-AQGGGAIVNTASVAGLGAAPKMSIYAASKHAVIGLTKSAAIEYAKK 178
Query: 888 NIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV---LTTKEISQSIIF 936
I+V + + T++ + + D + PV +E++ ++++
Sbjct: 179 GIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHPVGRIGKVEEVASAVLY 230
|
Length = 253 |
| >gnl|CDD|235813 PRK06482, PRK06482, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 6e-30
Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 8/203 (3%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
K F+TG+SSG G + + L+ G +V A RR D L++LK + V +LDVT
Sbjct: 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---GDRLWVLQLDVTD 59
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
V+ VV A LG ID++V+NAG F E+ + I+ N+ G + I L
Sbjct: 60 SAAVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAAL 119
Query: 837 PSMLHSRRP--GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
P H RR G I+ +SS G + G ++Y TK+ IEG A+ QEV+ I+ T +
Sbjct: 120 P---HLRRQGGGRIVQVSSEGGQIAYPGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIV 176
Query: 895 QAGDVKTELLSHSTDRDVVDKYD 917
+ G +T + +D YD
Sbjct: 177 EPGPARTNFGAGLDRGAPLDAYD 199
|
Length = 276 |
| >gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 8e-30
Identities = 68/189 (35%), Positives = 101/189 (53%), Gaps = 4/189 (2%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKT--SLQNAPGSIIVKKL 772
K+ VTG+SSG G +L G V+A R ++ ENL + + N +I V++L
Sbjct: 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQL 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DVT +N + + VL E+G ID+LVNNAG +E+ +EE+ N+ G +
Sbjct: 62 DVTDQNSIH-NFQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVT 120
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+LP M ++ G I+NISS +G F GL+ Y +KY +EG S +LR E+ I V
Sbjct: 121 QAVLPYM-RKQKSGKIINISSISGRVGFPGLSPYVSSKYALEGFSESLRLELKPFGIDVA 179
Query: 893 CIQAGDVKT 901
I+ G T
Sbjct: 180 LIEPGSYNT 188
|
Length = 280 |
| >gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 7/180 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +K + +TG+S GIG+ L + L GA+++ V R ++LE L L PG D
Sbjct: 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPY-PGRHRWVVAD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+T E + V+ E+G I++L+NNAGV +F L+E E ++ +N+ +
Sbjct: 62 LTSEAGREAVLARA-REMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTR 120
Query: 834 NILPSMLHSRRPGH--ILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+LP R ++N+ S G + G A Y +K+ + G S ALR+E++D ++V
Sbjct: 121 ALLP---LLRAQPSAMVVNVGSTFGSIGYPGYASYCASKFALRGFSEALRRELADTGVRV 177
|
Length = 263 |
| >gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 3e-29
Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 13/227 (5%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
++ +TG SGIG L + GAKVV + E +++ A G + K DV+
Sbjct: 1 IVLITGGGSGIGRLLALEFAKRGAKVVILDINEKGAEETANNVRKAGGKVHYYKCDVSKR 60
Query: 778 NDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+V + +++ E+G + IL+NNAGV+ L+E EE VN L
Sbjct: 61 EEVYEAAKKIKKEVGDVTILINNAGVVSGKKLLE-LPDEEIEKTFEVNTLAHFWTTKAFL 119
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV---SDRNIKVTC 893
P ML R GHI+ I+S AG+ AGLA Y +K G +LR E+ IK T
Sbjct: 120 PDML-ERNHGHIVTIASVAGLISPAGLADYCASKAAAVGFHESLRLELKAYGKPGIKTTL 178
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQ 940
+ + T + P+L + +++ I+ A+L
Sbjct: 179 VCPYFINTGMFQGVKTP-------RPLLAPILEPEYVAEKIVRAILT 218
|
17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-29
Identities = 59/201 (29%), Positives = 106/201 (52%), Gaps = 5/201 (2%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK-LDVT 775
K FVTG++SGIG L GA++ R D L + G++ + LD++
Sbjct: 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDIS 60
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+ V ++ A G +D+++N AG+ + +++ E+W M++VN+ G +H I
Sbjct: 61 DYDAVAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETF 120
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
+P M+ + R GH++N+SS AG+ A Y+ +K+ + G+S LR +++ I V+ +
Sbjct: 121 VPPMVAAGRGGHLVNVSSAAGLVALPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVV 180
Query: 896 AGDVKTELLS----HSTDRDV 912
G VKT L++ DR+
Sbjct: 181 PGAVKTPLVNTVEIAGVDRED 201
|
Length = 272 |
| >gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-29
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 6/227 (2%)
Query: 720 FVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
VTG S GIG+ + L GA VV R+ D + ++ G +V + DV+
Sbjct: 2 LVTGGSRGIGKAIALRLAERGADVVINYRKSKDAAAEVAAEIEELGGKAVVVRADVSQPQ 61
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838
DV+++ V G +D+LV+NA F + + W+A +N N+K ++HC
Sbjct: 62 DVEEMFAAVKERFGRLDVLVSNAAAGAFRPLSELTPAHWDAKMNTNLKALVHCAQQAAKL 121
Query: 839 MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGD 898
M R G I+ ISS +R K +E + L E+ R I+V + G
Sbjct: 122 M-RERGGGRIVAISSLGSIRALPNYLAVGTAKAALEALVRYLAVELGPRGIRVNAVSPGV 180
Query: 899 VKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPS 942
+ T+ L+H +R+ + + P V T ++++ ++ F +
Sbjct: 181 IDTDALAHFPNREDL-LEAAAANTPAGRVGTPQDVADAVGFLCSDAA 226
|
This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 4e-29
Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 21/234 (8%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVK 770
L K I +TG+SSGIGE + GA VVAVARR D L+ + + A G +
Sbjct: 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAV 94
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAG-VMYFTLMEKYKLEEWNAM---INVNIK 826
D++ + V +V +V +G +DIL+NNAG + L E L+ W+ + + +N
Sbjct: 95 PCDLSDLDAVDALVADVEKRIGGVDILINNAGRSIRRPLAE--SLDRWHDVERTMVLNYY 152
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISS---NAGVRPFAGLAVYTGTKYFIEGISGALRQE 883
L I + P ML R GHI+N+++ + P +VY +K + +S + E
Sbjct: 153 APLRLIRGLAPGML-ERGDGHIINVATWGVLSEASPL--FSVYNASKAALSAVSRVIETE 209
Query: 884 VSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFA 937
DR + T + V T +++ + YD +P LT E ++ ++ A
Sbjct: 210 WGDRGVHSTTLYYPLVATPMIAPTKA------YD---GLPALTADEAAEWMVTA 254
|
Length = 293 |
| >gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-29
Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 5/201 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV +TG +SGIGE + GA+VV D + + L + S + D
Sbjct: 2 LDGKVAIITGGASGIGEATARLFAKHGARVVIADIDDDAGQAVAAELGDPDISFV--HCD 59
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM--YFTLMEKYKLEEWNAMINVNIKGVLHC 831
VT+E DV+ V +A G +DI+ NNAGV+ + + LEE+ +++VN+ G
Sbjct: 60 VTVEADVRAAVDTAVARFGRLDIMFNNAGVLGAPCYSILETSLEEFERVLDVNVYGAFLG 119
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ M+ +++ G I++++S AGV G YT +K+ + G++ + E+ + I+V
Sbjct: 120 TKHAARVMIPAKK-GSIVSVASVAGVVGGLGPHAYTASKHAVLGLTRSAATELGEHGIRV 178
Query: 892 TCIQAGDVKTELLSHSTDRDV 912
C+ V T LL+ +
Sbjct: 179 NCVSPYGVATPLLTAGFGVED 199
|
Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|234422 TIGR03971, SDR_subfam_1, oxidoreductase, SDR family | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 5e-29
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 21/220 (9%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLK---------------- 757
L KV F+TG++ G G L GA ++A ID L
Sbjct: 1 LEGKVAFITGAARGQGRAHAVRLAAEGADIIA----IDLCAPLSDYPTYPLATREDLDET 56
Query: 758 TSLQNAPG-SIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEE 816
L A G ++ +K DV +V+ VV + + + G +D++V NAGV+ + + E+
Sbjct: 57 ARLVEALGRKVLARKADVRDLAEVRAVVEDGVEQFGRLDVVVANAGVLSYGRSWELSEEQ 116
Query: 817 WNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876
W+ ++++N+ GV ++P M+ G I+ SS AG++ GLA Y K+ + G+
Sbjct: 117 WDTVLDINLTGVWRTCKAVVPHMIERGNGGSIIITSSVAGLKALPGLAHYAAAKHGLVGL 176
Query: 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY 916
+ L E+++ I+V I V T +++ R+ KY
Sbjct: 177 TKTLANELAEYGIRVNSIHPYSVDTPMIAPEAMREAFLKY 216
|
Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. Members of the present subfamily may occur several to a genome and are largely restricted to genomes that contain members of families TIGR03962, TIGR03967, and TIGR03969. Many members have been annotated by homology as carveol dehydrogenases. Length = 265 |
| >gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 6e-29
Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 6/192 (3%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKK 771
L+ KV VTG +SGIG + + GA+V + DR E++ G+
Sbjct: 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALL----DRSEDVAEVAAQLLGGNAKGLV 67
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV+ V+ V V++ G IDILVN+AGV E E+W+ I++N+KG
Sbjct: 68 CDVSDSQSVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLM 127
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ M+ + G I+N++S AGV Y +K + G++ L E I V
Sbjct: 128 AQAVGRHMI-AAGGGKIVNLASQAGVVALERHVAYCASKAGVVGMTKVLALEWGPYGITV 186
Query: 892 TCIQAGDVKTEL 903
I V TEL
Sbjct: 187 NAISPTVVLTEL 198
|
Length = 255 |
| >gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 6e-29
Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 4/202 (1%)
Query: 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIV 769
+LA KV+ VTG++ GIG +L + L GAK+ V L L L ++
Sbjct: 3 PMTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAEL-GGDDRVLT 61
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
DVT ++ E + G ID++V NAG+ + + + + +I+VN+ GV
Sbjct: 62 VVADVTDLAAMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVF 121
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
H + LP+++ R G++L +SS A G+A Y +K +E + ALR EV+ +
Sbjct: 122 HTVRATLPALIERR--GYVLQVSSLAAFAAAPGMAAYCASKAGVEAFANALRLEVAHHGV 179
Query: 890 KVTCIQAGDVKTELLSHSTDRD 911
V + T+L+ D D
Sbjct: 180 TVGSAYLSWIDTDLVRD-ADAD 200
|
Length = 296 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 9e-29
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 5/194 (2%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
KV VTG+S GIG ++ + L G +V R + L L S + D
Sbjct: 1 KVALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLAALSASGGDV----EAVPYDARD 56
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
D + +V + G ID+LV+NAG+ T + + E A ++N+ +L
Sbjct: 57 PEDARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAELEAHFSINVIAPAELTRALL 116
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
P++ + G ++ ++S +G R AG A Y+ +K+ + ++ ALRQE D ++V+ +
Sbjct: 117 PALREAGS-GRVVFLNSLSGKRVLAGNAGYSASKFALRALAHALRQEGWDHGVRVSAVCP 175
Query: 897 GDVKTELLSHSTDR 910
G V T + T
Sbjct: 176 GFVDTPMAQGLTLV 189
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3 | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 9e-29
Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 3/191 (1%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
V+ +TG+SSGIG GAKVV AR + L L ++ G I DV
Sbjct: 2 VVVITGASSGIGRATALAFAERGAKVVLAARSAEALHELAREVRELGGEAIAVVADVADA 61
Query: 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILP 837
V++ + G ID VNNAGV F E EE+ + +VN G ++ LP
Sbjct: 62 AQVERAADTAVERFGRIDTWVNNAGVAVFGRFEDVTPEEFRRVFDVNYLGHVYGTLAALP 121
Query: 838 SMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV--SDRNIKVTCIQ 895
+ R G ++N+ S G R A Y+ +K+ + G + +LR E+ I VT +Q
Sbjct: 122 HLR-RRGGGALINVGSLLGYRSAPLQAAYSASKHAVRGFTESLRAELAHDGAPISVTLVQ 180
Query: 896 AGDVKTELLSH 906
+ T H
Sbjct: 181 PTAMNTPFFGH 191
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233 |
| >gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-28
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 2/210 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG+S GIG + L GA +V +R ++ E + ++ D
Sbjct: 3 LKGKVALVTGASRGIGFGIASGLAEAGANIVINSRNEEKAEEAQQLIEKEGVEATAFTCD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ E +K V + + G IDILVNNAG++ E++ EW +I+VN+ GV
Sbjct: 63 VSDEEAIKAAVEAIEEDFGKIDILVNNAGIIRRHPAEEFPEAEWRDVIDVNLNGVFFVSQ 122
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ M+ G I+NI S + Y +K + G++ AL E + I+V
Sbjct: 123 AVARHMIKQGH-GKIINICSLLSELGGPPVPAYAASKGGVAGLTKALATEWARHGIQVNA 181
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I G TE+ + DI K +P
Sbjct: 182 IAPGYFATEMTEAVVADPEFND-DILKRIP 210
|
Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 3e-28
Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 11/200 (5%)
Query: 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN--APGSI 767
N LA KV VTG++ GIG + + GA V E ++ A +
Sbjct: 1 MMNRLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARV 60
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINV 823
+ DVT V V G +D+LVNNAG+ F + + E+W V
Sbjct: 61 LAVPADVTDAASVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTD----EDWRRCFAV 116
Query: 824 NIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQE 883
++ G + +LP M+ R G I+NI+S + G Y K+ + G++ AL E
Sbjct: 117 DLDGAWNGCRAVLPGMV-ERGRGSIVNIASTHAFKIIPGCFPYPVAKHGLLGLTRALGIE 175
Query: 884 VSDRNIKVTCIQAGDVKTEL 903
+ RN++V I G ++T+L
Sbjct: 176 YAARNVRVNAIAPGYIETQL 195
|
Length = 260 |
| >gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 3e-28
Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 4/206 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVA----RRIDRLENLKTSLQNAPGSIIV 769
L ++ + +TG S G+G + L GA V+ + R + + ++ A G +
Sbjct: 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALG 63
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
DV + + + E G +DILVNNAG+ + +EEW+ +I+VN+ G
Sbjct: 64 LAFDVRDFAATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFF 123
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ LP M+ +RR G I+NI+S AGVR G Y +K + G++ L E++ R I
Sbjct: 124 NVTQAALPPMIRARRGGRIVNIASVAGVRGNRGQVNYAASKAGLIGLTKTLANELAPRGI 183
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDK 915
V + G + T + ++ + +
Sbjct: 184 TVNAVAPGAINTPMADNAAPTEHLLN 209
|
Length = 249 |
| >gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-28
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 19/201 (9%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENL--KTSLQ--NAPGSIIVKKL 772
KV +TG +SGIG K L+ GAKV +DR EN LQ N +
Sbjct: 1 KVAIITGGASGIGLATAKLLLKKGAKVAI----LDRNENPGAAAELQAINPKVKATFVQC 56
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGV-----MYFTLMEKYKLEEWNAMINVNIKG 827
DVT + ++ + + G +DIL+NNAG+ F W I+VN+ G
Sbjct: 57 DVTSWEQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLP---PPWEKTIDVNLTG 113
Query: 828 VLHCIGNILPSMLHS--RRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQE-V 884
V++ L M + + G I+NI S AG+ P VY+ +K+ + G + +L
Sbjct: 114 VINTTYLALHYMDKNKGGKGGVIVNIGSVAGLYPAPQFPVYSASKHGVVGFTRSLADLLE 173
Query: 885 SDRNIKVTCIQAGDVKTELLS 905
++V I G T LL
Sbjct: 174 YKTGVRVNAICPGFTNTPLLP 194
|
This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 7e-28
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 5/209 (2%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVA-VARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
++ VTG GIG + + L G +V A +R E V + DV+
Sbjct: 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVS 60
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
K V +V AELG ID+LVNNAG+ +K E+W+A+I+ N+ V + +
Sbjct: 61 SFESCKAAVAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPV 120
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
+ M R G I+NISS G + G Y+ K + G + AL QE + + + V I
Sbjct: 121 IDGMR-ERGWGRIINISSVNGQKGQFGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTIS 179
Query: 896 AGDVKTELLSHSTDRDVVDKYDISKAVPV 924
G + T+++ + DV++ I +PV
Sbjct: 180 PGYIATDMVM-AMREDVLNS--IVAQIPV 205
|
This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242 |
| >gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 8e-28
Identities = 60/197 (30%), Positives = 87/197 (44%), Gaps = 7/197 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ +V+ +TG+S+G+G + GAKVV +AR + LE L ++ A G + D
Sbjct: 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVAD 65
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V V+ ELG ID VNNA V F E EE+ + V GV+H G
Sbjct: 66 VADAEAVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVH--G 123
Query: 834 NI--LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV-SDR-NI 889
+ L M R G I+ + S R + Y K+ I G + +LR E+ D +
Sbjct: 124 TLAALRHMR-PRDRGAIIQVGSALAYRSIPLQSAYCAAKHAIRGFTDSLRCELLHDGSPV 182
Query: 890 KVTCIQAGDVKTELLSH 906
VT +Q V T
Sbjct: 183 SVTMVQPPAVNTPQFDW 199
|
Length = 334 |
| >gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2 | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 9/195 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L + +TG +SGIG L + + G V+ RR +RL K L N LD
Sbjct: 3 LTGNTVLITGGTSGIGLALARKFLEAGNTVIITGRREERLAEAKKELPNIHT----IVLD 58
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY---FTLMEKYKLEEWNAMINVNIKGVLH 830
V V+ + +L+E ++DIL+NNAG+ L++ + I+ N+ G +
Sbjct: 59 VGDAESVEALAEALLSEYPNLDILINNAGIQRPIDLRDPASD-LDKADTEIDTNLIGPIR 117
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
I LP L + I+N+SS P A VY TK + + ALR ++ D ++
Sbjct: 118 LIKAFLP-HLKKQPEATIVNVSSGLAFVPMAANPVYCATKAALHSYTLALRHQLKDTGVE 176
Query: 891 VTCIQAGDVKTELLS 905
V I V TEL
Sbjct: 177 VVEIVPPAVDTELHE 191
|
Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228 |
| >gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 7/200 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG+SSG+G + + L GAKVV +RR++RL+ L+ ++ G+ V LD
Sbjct: 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT +K V E G IDILVNN+GV + +++ + + N +G
Sbjct: 67 VTDYQSIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQ 126
Query: 834 NILPSML-------HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
+ M+ +++ G I+NI+S AG+R + +Y +K + ++ A+ E
Sbjct: 127 EVAKRMIARAKGAGNTKPGGRIINIASVAGLRVLPQIGLYCMSKAAVVHMTRAMALEWGR 186
Query: 887 RNIKVTCIQAGDVKTELLSH 906
I V I G + TE+ H
Sbjct: 187 HGINVNAICPGYIDTEINHH 206
|
Length = 258 |
| >gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 19/193 (9%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K+I VTG SSGIG +VK+L+ GA VV ++ V D
Sbjct: 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNA--------DIHGGDGQHENYQFV-PTD 57
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLM-------EKYKLEE--WNAMINVN 824
V+ +V V E++ + G ID LVNNAG+ L+ KY+L E ++ M N+N
Sbjct: 58 VSSAEEVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNIN 117
Query: 825 IKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV 884
KGV + M+ + G I+N+SS AG+ G + Y TK + + + +E+
Sbjct: 118 QKGVFLMSQAVARQMV-KQHDGVIVNMSSEAGLEGSEGQSCYAATKAALNSFTRSWAKEL 176
Query: 885 SDRNIKVTCIQAG 897
NI+V + G
Sbjct: 177 GKHNIRVVGVAPG 189
|
Length = 266 |
| >gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 50/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L+ K VTG S G+G Q+ + L GA+VV AR+ + LE L+ + D
Sbjct: 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAAD 69
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL---H 830
V E D++++ E L GH+DILVNNAG + E + +E W+ ++N+N++G+
Sbjct: 70 VADEADIERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQ 129
Query: 831 CIGNILPSMLHSRRPGHILNISSNAG 856
+ SM+ R G I+N++S AG
Sbjct: 130 AVAKR--SMI-PRGYGRIINVASVAG 152
|
Length = 259 |
| >gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 9/188 (4%)
Query: 721 VTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL-QNAPGSIIVKKLDVTIEND 779
VTG++ GIG+ ++L G V+ ++R ++L+ + + + D + +D
Sbjct: 6 VTGATDGIGKAYAEELAKRGFNVILISRTQEKLDAVAKEIEEKYGVETKTIAADFSAGDD 65
Query: 780 VKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLE----EWNAMINVNIKGVLHCIGNI 835
+ + + + L L I ILVNN G+ + + +Y LE E +INVN+ L I
Sbjct: 66 IYERIEKELEGL-DIGILVNNVGISHS--IPEYFLETPEDELQDIINVNVMATLKMTRLI 122
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
LP M+ R+ G I+NISS AG+ P LA Y+ +K F++ S AL +E + I V +
Sbjct: 123 LPGMV-KRKKGAIVNISSFAGLIPTPLLATYSASKAFLDFFSRALYEEYKSQGIDVQSLL 181
Query: 896 AGDVKTEL 903
V T++
Sbjct: 182 PYLVATKM 189
|
This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-27
Identities = 64/281 (22%), Positives = 129/281 (45%), Gaps = 21/281 (7%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
V +TG TG+LG HL+++ L++ + VR +R+E+ L+ D
Sbjct: 1 VFVTGGTGFLGRHLVKR-LLENGFKVLVLVRSESLGEAHERIEEAGLE----------AD 49
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLI 441
R+ +++ DL+ LGL + L+ ++D +IH AA + P +++N+ T++++
Sbjct: 50 RVRVLEGDLTQPNLGL-SAAASRELAGKVDHVIHCAASYDFQAPNEDAWRTNIDGTEHVL 108
Query: 442 EFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA 501
E + I+ FHYVST Y + N + + + + + Y QSK +E LV A
Sbjct: 109 ELAARLDIQRFHYVST--AY--VAGNREGNIRETELNPGQNFKNPYEQSKAEAEQLVRAA 164
Query: 502 GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP----DIDWYLEFTPVD 557
+P+++ R + G + +D +L + +LG + L PVD
Sbjct: 165 ATQ-IPLTVYRPSIVVGDSKTGRIEKIDGLYELLNLLAKLGRWLPMPGNKGARLNLVPVD 223
Query: 558 FLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYG 598
++ ++V L+ +I++ + P ++ + + +
Sbjct: 224 YVADAIVYLSKKPEANGQIFHLTDPTPQTLREIADLFKSAF 264
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-27
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 9/191 (4%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
KV VT +SSGIG + + L GA+V AR + LE + L+ ++ D+T
Sbjct: 1 GKVALVTAASSGIGLAIARALAREGARVAICARNRENLERAASELRAGGAGVLAVVADLT 60
Query: 776 IENDVKKVVREVLAELGHIDILVNNAG----VMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D+ ++V + G +DILVNNAG + L E+W ++ + V+
Sbjct: 61 DPEDIDRLVEKAGDAFGRVDILVNNAGGPPPGPFAEL----TDEDWLEAFDLKLLSVIRI 116
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ +LP M R G I+NISS P L + + + G+ L +E++ + V
Sbjct: 117 VRAVLPGMK-ERGWGRIVNISSLTVKEPEPNLVLSNVARAGLIGLVKTLSRELAPDGVTV 175
Query: 892 TCIQAGDVKTE 902
+ G + TE
Sbjct: 176 NSVLPGYIDTE 186
|
This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-27
Identities = 66/233 (28%), Positives = 101/233 (43%), Gaps = 18/233 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR---RIDRLENLKT---------SLQ 761
L+ KV FVTG+S GIG + L GA VV A+ D ++
Sbjct: 1 LSGKVAFVTGASRGIGRAIALRLAKAGATVVVAAKTASEGDNGSAKSLPGTIEETAEEIE 60
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
A G + +DV E+ V+ +V + + G +DILVNNAG ++ +L+E + ++ M
Sbjct: 61 AAGGQALPIVVDVRDEDQVRALVEATVDQFGRLDILVNNAGAIWLSLVEDTPAKRFDLMQ 120
Query: 822 NVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALR 881
VN++G LP M+ + + GHILNIS +RP G Y K + ++ L
Sbjct: 121 RVNLRGTYLLSQAALPHMVKAGQ-GHILNISPPLSLRPARGDVAYAAGKAGMSRLTLGLA 179
Query: 882 QEVSDRNIKVTC-----IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKE 929
E+ I V TEL S +S AV + ++
Sbjct: 180 AELRRHGIAVNSLWPSTAIETPAATELSGGSDPARARSPEILSDAVLAILSRP 232
|
This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 8e-27
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 5/192 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS-IIVK 770
++L KV+ +TG G+G L GA+V + R L +L P + +
Sbjct: 3 HSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ---TLPGVPADALRIG 59
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+D+ ++ V EV + G +D LVN AG + + + W+ M VN+K L+
Sbjct: 60 GIDLVDPQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLN 119
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
LP++ S G I+NI + A ++ G+ Y K + ++ AL E+ DR I
Sbjct: 120 ASKAALPALTASGG-GRIVNIGAGAALKAGPGMGAYAAAKAGVARLTEALAAELLDRGIT 178
Query: 891 VTCIQAGDVKTE 902
V + + T
Sbjct: 179 VNAVLPSIIDTP 190
|
Length = 239 |
| >gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 10/194 (5%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENL--KTSLQNAPGSIIV 769
N L KV VTG + G+G + LV GAKVV D L+ + + +
Sbjct: 1 NRLKGKVAIVTGGARGLGLAHARLLVAEGAKVVLS----DILDEEGQAAAAELGDAARFF 56
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
LDVT E+ VV G +D+LVNNAG++ +E LEEW ++++N+ GV
Sbjct: 57 H-LDVTDEDGWTAVVDTAREAFGRLDVLVNNAGILTGGTVETTTLEEWRRLLDINLTGVF 115
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI--SGALRQEVSDR 887
++P M + G I+N+SS G+ LA Y +K + G+ S AL
Sbjct: 116 LGTRAVIPPMKEAGG-GSIINMSSIEGLVGDPALAAYNASKGAVRGLTKSAALECATQGY 174
Query: 888 NIKVTCIQAGDVKT 901
I+V + G + T
Sbjct: 175 GIRVNSVHPGYIYT 188
|
This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247 |
| >gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11 | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 57/195 (29%), Positives = 103/195 (52%), Gaps = 9/195 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLEN-----LKTSLQNAPGSII 768
L+ KV +TGSSSGIG LGA++ R +RLE L+ + ++
Sbjct: 1 LSGKVAIITGSSSGIGAGTAILFARLGARLALTGRDAERLEETRQSCLQAGVSEKKILLV 60
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
V D+T E +++ LA+ G +DILVNNAG++ E +EE++ ++N+N++ V
Sbjct: 61 VA--DLTEEEGQDRIISTTLAKFGRLDILVNNAGILAKGGGEDQDIEEYDKVMNLNLRAV 118
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
++ +P ++ ++ G I+N+SS AG R F G+ Y +K ++ + E++ +
Sbjct: 119 IYLTKLAVPHLIKTK--GEIVNVSSVAGGRSFPGVLYYCISKAALDQFTRCTALELAPKG 176
Query: 889 IKVTCIQAGDVKTEL 903
++V + G + T
Sbjct: 177 VRVNSVSPGVIVTGF 191
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253 |
| >gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 1/189 (0%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-LENLKTSLQNAPGSIIVKKLDV 774
+KV +TG++ GIG + + L G +V ++ ++ + A + + DV
Sbjct: 2 SKVAIITGAAQGIGRAIAERLAADGFNIVLADLNLEEAAKSTIQEISEAGYNAVAVGADV 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
T ++DV+ ++ + + + G D++VNNAG+ T + E+ + VN+ GVL I
Sbjct: 62 TDKDDVEALIDQAVEKFGSFDVMVNNAGIAPITPLLTITEEDLKKVYAVNVFGVLFGIQA 121
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
G I+N SS AGV+ F L Y+ +K+ + G++ QE++ + I V
Sbjct: 122 AARQFKKLGHGGKIINASSIAGVQGFPNLGAYSASKFAVRGLTQTAAQELAPKGITVNAY 181
Query: 895 QAGDVKTEL 903
G VKTE+
Sbjct: 182 APGIVKTEM 190
|
2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 10/162 (6%)
Query: 709 VFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSII 768
+ + K ++VTG++ GIG + V GAKV+ D+ + A
Sbjct: 1 MNAMDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGF----DQAFLTQEDYPFAT---- 52
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
LDV+ V +V + +LAE G +D+LVN AG++ + E+W VN G
Sbjct: 53 -FVLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGA 111
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870
+ ++P +R G I+ + SNA P G+A Y +K
Sbjct: 112 FNLFRAVMPQF-RRQRSGAIVTVGSNAAHVPRIGMAAYGASK 152
|
Length = 252 |
| >gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TG+ GIGE + + GA ++ + +E L L D
Sbjct: 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDIS-PEIEKLADELCGRGHRCTAVVAD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V V ++ + G IDILVNNAGV E+ + I++NIKGV +
Sbjct: 63 VRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTK 122
Query: 834 NILPSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+LP M+ +R+ G I+ +SS G + G Y TK I G++ +L E + I+V
Sbjct: 123 AVLPEMI-ARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVN 181
Query: 893 CIQAGDVKT---ELLSHSTDRD----VVDKYDISKAVPV 924
I G V+T E ++ ++ + V+ +++KA+P+
Sbjct: 182 AICPGYVRTPMAESIARQSNPEDPESVLT--EMAKAIPL 218
|
Length = 263 |
| >gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 5e-26
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 8/190 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
A K VTG+ GIG VK L GA+VVAV+R L++L ++ PG I +D
Sbjct: 5 FAGKRALVTGAGKGIGRATVKALAKAGARVVAVSRTQADLDSL---VRECPG-IEPVCVD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
++ + D E L +G +D+LVNNA V + E ++ +VN++ V+H
Sbjct: 61 LS-DWDA---TEEALGSVGPVDLLVNNAAVAILQPFLEVTKEAFDRSFDVNVRAVIHVSQ 116
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ M+ PG I+N+SS A R VY TK ++ ++ + E+ I+V
Sbjct: 117 IVARGMIARGVPGSIVNVSSQASQRALTNHTVYCSTKAALDMLTKVMALELGPHKIRVNS 176
Query: 894 IQAGDVKTEL 903
+ V T++
Sbjct: 177 VNPTVVMTDM 186
|
Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244 |
| >gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 7/198 (3%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
KV VTG++ GIG ++V+ L G V+ AR ++R + L+ S+ +LDVT
Sbjct: 1 KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFHQLDVT 60
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTL-MEKYKLEEWNAMINVNIKGVLHCIGN 834
+ ++ V + G +DILVNNAG+ + E+ + N G +
Sbjct: 61 DDASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARETMKTNFFGTVDVTQA 120
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
+LP +L G I+N+SS G A Y +K + ++ L +E+ + IKV
Sbjct: 121 LLP-LLKKSPAGRIVNVSSGLGSLTSA----YGVSKAALNALTRILAKELKETGIKVNAC 175
Query: 895 QAGDVKTELLSHSTDRDV 912
G VKT++ +
Sbjct: 176 CPGWVKTDMGGGKAPKTP 193
|
PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225 |
| >gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 7e-26
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 4/196 (2%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PG-SIIVKKLDV 774
+ I +TG+SSG+G + ++ G + ARR DRLE LK L PG + V LDV
Sbjct: 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDV 62
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
+ V +V E ELG +D ++ NAG+ + K A N L
Sbjct: 63 NDHDQVFEVFAEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEA 122
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAG-LAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ + + GH++ ISS + VR G A Y +K + + LR E++ IKV+
Sbjct: 123 AM-EIFREQGSGHLVLISSVSAVRGLPGVKAAYAASKAGVASLGEGLRAELAKTPIKVST 181
Query: 894 IQAGDVKTELLSHSTD 909
I+ G +++E+ + +
Sbjct: 182 IEPGYIRSEMNAKAKS 197
|
Length = 248 |
| >gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-26
Identities = 62/189 (32%), Positives = 96/189 (50%), Gaps = 6/189 (3%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+KV VTG+ GIG + K LV G KV V + + L G I K DV+
Sbjct: 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVS 61
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+ V VR+V+ G ++++VNNAGV T +E E+++ + N+N+ GV I I
Sbjct: 62 DRDQVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGV---IWGI 118
Query: 836 LPSMLHSRRPGH---ILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ ++ GH I+N +S AGV LAVY+ TK+ + G++ ++++ I V
Sbjct: 119 QAAQEAFKKLGHGGKIINATSQAGVVGNPELAVYSSTKFAVRGLTQTAARDLASEGITVN 178
Query: 893 CIQAGDVKT 901
G VKT
Sbjct: 179 AYAPGIVKT 187
|
Length = 256 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 8e-26
Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 12/227 (5%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
+V+ VTG++ GIG + G +VV R ++R SL ++ +DV+
Sbjct: 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHAL---AMDVSD 62
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGV----MYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
E +++ ++ E G ID+LVNNAGV M TL LEE+ + +N+ G
Sbjct: 63 EAQIREGFEQLHREFGRIDVLVNNAGVTDPTMTATL--DTTLEEFARLQAINLTGAYLVA 120
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
L M+ I+N++S AG+ Y+ +K + ++ +L E + + I+V
Sbjct: 121 REALRLMIEQGHGAAIVNVASGAGLVALPKRTAYSASKAAVISLTRSLACEWAAKGIRVN 180
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIF 936
+ G V+T++++ +D + +P + +EI++++ F
Sbjct: 181 AVLPGYVRTQMVAELERAGKLDPSAVRSRIPLGRLGRPEEIAEAVFF 227
|
Length = 520 |
| >gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 9e-26
Identities = 65/202 (32%), Positives = 101/202 (50%), Gaps = 10/202 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKKL 772
KV +TG + GIG + + + GAKV V + + L+ G +K
Sbjct: 5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREK-----GVFTIK-C 58
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV + VKK V E G +D+LVNNAG+MY E++ E++N MI +N+ G ++
Sbjct: 59 DVGNRDQVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTT 118
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFA-GLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
LP + S+ G I+NI+SNAG+ A G Y TK I ++ L E+ I+V
Sbjct: 119 YEFLPLLKLSKN-GAIVNIASNAGIGTAAEGTTFYAITKAGIIILTRRLAFELGKYGIRV 177
Query: 892 TCIQAGDVKTEL-LSHSTDRDV 912
+ G V+T++ LS + +
Sbjct: 178 NAVAPGWVETDMTLSGKSQEEA 199
|
Length = 255 |
| >gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 8/186 (4%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
+ VTG++ GIG + + L+ GA V+A+ D L + + LDV
Sbjct: 1 VIVTGAAQGIGRAVARHLLQAGATVIAL----DLPFV---LLLEYGDPLRLTPLDVADAA 53
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838
V++V +LAE G ID LVN AGV+ + E+W VN+ GV + + + P
Sbjct: 54 AVREVCSRLLAEHGPIDALVNCAGVLRPGATDPLSTEDWEQTFAVNVTGVFNLLQAVAPH 113
Query: 839 MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGD 898
M RR G I+ ++SNA P +A Y +K + +S L E++ ++ + G
Sbjct: 114 MK-DRRTGAIVTVASNAAHVPRISMAAYGASKAALASLSKCLGLELAPYGVRCNVVSPGS 172
Query: 899 VKTELL 904
T +
Sbjct: 173 TDTAMQ 178
|
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 33/246 (13%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL---QNAPGSIIVK 770
L +KV+ VTGS GIG + L G+ VV A++ R E + +L + G I
Sbjct: 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKK--RAEEMNETLKMVKENGGEGIGV 61
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFT--------LMEKYKLEEWNAMIN 822
DV+ + + + + G DILVNNAG+ F+ L++K I+
Sbjct: 62 LADVSTREGCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDK--------HIS 113
Query: 823 VNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQ 882
+ K V++C + M R G I+NI+S AG+RP GL++Y K + ++ L
Sbjct: 114 TDFKSVIYCSQELAKEM---REGGAIVNIASVAGIRPAYGLSIYGAMKAAVINLTKYLAL 170
Query: 883 EVSDRNIKVTCIQAGDVKTEL------LSHSTDRDVVDKYDISKAVPVLTTKEISQSIIF 936
E++ + I+V I G VKT+L + ++++ +K+ + +L +E+++ +
Sbjct: 171 ELAPK-IRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEKFTLMGK--ILDPEEVAEFVAA 227
Query: 937 ALLQPS 942
L S
Sbjct: 228 ILKIES 233
|
Length = 252 |
| >gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 2e-25
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 8/226 (3%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLD 773
K+ VTG+ GIG + ++L+ G +V+A D ++ + +K+LD
Sbjct: 1 MKKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + + + E+ E G +DILVNNAG+ ++ ++ +EWN +IN N+ V +
Sbjct: 61 VTDTEECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQ 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ +M + G I+NISS G++ G Y+ K + G + AL E + I V C
Sbjct: 121 PLFAAM-CEQGYGRIINISSVNGLKGQFGQTNYSAAKAGMIGFTKALASEGARYGITVNC 179
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIF 936
I G + T ++ +V+ I +P+ T +EI+ ++ F
Sbjct: 180 IAPGYIATPMVEQMGP-EVLQS--IVNQIPMKRLGTPEEIAAAVAF 222
|
Length = 245 |
| >gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 38/206 (18%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ-NAPGSIIVKK---- 771
K + +TG SG G L K L +LG V+A L N PG+ +++
Sbjct: 1 KAVLITGCDSGFGNLLAKKLDSLGFTVLA------------GCLTKNGPGAKELRRVCSD 48
Query: 772 ------LDVTIENDVKKVVREVLAELGHIDI--LVNNAGVMYF------TLMEKYKLEEW 817
LDVT +K+ + V +G + LVNNAG++ F M+ Y+
Sbjct: 49 RLRTLQLDVTKPEQIKRAAQWVKEHVGEKGLWGLVNNAGILGFGGDEELLPMDDYR---- 104
Query: 818 NAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGIS 877
+ VN+ G + LP + ++ G ++N+SS G PF Y +K +E S
Sbjct: 105 -KCMEVNLFGTVEVTKAFLPLLRRAK--GRVVNVSSMGGRVPFPAGGAYCASKAAVEAFS 161
Query: 878 GALRQEVSDRNIKVTCIQAGDVKTEL 903
+LR+E+ +KV+ I+ G+ KT +
Sbjct: 162 DSLRRELQPWGVKVSIIEPGNFKTGI 187
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281 |
| >gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 3e-25
Identities = 51/198 (25%), Positives = 87/198 (43%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
+ L K VTG++SGIG+++ +L GA V D + + A G I
Sbjct: 3 SNLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVA 62
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+DVT E+ V + +V G +DILV+NAG+ +E Y +W M +++ G
Sbjct: 63 MDVTNEDAVNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLT 122
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
L M R G ++ + S + Y K+ + G++ L +E + N++
Sbjct: 123 TKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRS 182
Query: 892 TCIQAGDVKTELLSHSTD 909
+ G V+T L+
Sbjct: 183 HVVCPGFVRTPLVDKQIP 200
|
Length = 262 |
| >gnl|CDD|181297 PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 62/239 (25%), Positives = 117/239 (48%), Gaps = 20/239 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +KVI +TG + G+G + + L GAK+ + ++LE + +
Sbjct: 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAAN 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYK---------LEEWNAMINVN 824
VT E DV+ ++ + G ++ L+NNAG++ L+ K K LE++ ++I+VN
Sbjct: 63 VTDEEDVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVN 122
Query: 825 IKGVLHCIGNILPSMLHSRRPGHILNISS--NAGVRPFAGLAVYTGTKYFIEGISGALRQ 882
+ GV C M+ S G I+NISS AG G Y+ +K + ++ +
Sbjct: 123 LTGVFLCGREAAAKMIESGSKGVIINISSIARAGN---MGQTNYSASKAGVAAMTVTWAK 179
Query: 883 EVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIFAL 938
E++ I+V I G ++TE+ + + + +++ + K +PV +EI+ ++ F +
Sbjct: 180 ELARYGIRVAAIAPGVIETEMTA-AMKPEALER--LEKMIPVGRLGEPEEIAHTVRFII 235
|
Length = 253 |
| >gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 7e-25
Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 31/252 (12%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL-QNAPGSII-VKKLDV 774
KV+ +TG++SGIG++ ++L GA V+ R ++ E + + + + V +LD+
Sbjct: 2 KVVVITGANSGIGKETARELAKRGAHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQLDL 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLME-KYKLEEWNAMINVNIKGVLHCIG 833
+ V++ E LA +DIL+NNAG+M K E VN G
Sbjct: 62 SSLASVRQFAEEFLARFPRLDILINNAGIMAPPRRLTKDGFE---LQFAVNYLGHFLLTN 118
Query: 834 NILPSMLHSRRPGHILNISSNA--------------GVRPFAGLAVYTGTK----YFIEG 875
+LP + S P I+N+SS A + ++ Y +K F
Sbjct: 119 LLLPVLKAS-APSRIVNVSSIAHRAGPIDFNDLDLENNKEYSPYKAYGQSKLANILFTR- 176
Query: 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSII 935
L + + + V + G V+TELL + ++ K + + + ++ +Q+ +
Sbjct: 177 ---ELARRLEGTGVTVNALHPGVVRTELLRRNGSFFLLYK--LLRPFLKKSPEQGAQTAL 231
Query: 936 FALLQPSHSAVN 947
+A P V+
Sbjct: 232 YAATSPELEGVS 243
|
Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269 |
| >gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 7e-25
Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 16/237 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L+ + VTG+S GIGE++ + L GA V R+++LE L L VK
Sbjct: 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGER-----VKIFP 58
Query: 774 VTIEN--DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+ + +VK + ++ A+L +DILVNNAG+ L + E+W++++ VN+
Sbjct: 59 ANLSDRDEVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRL 118
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ M+ RR G I+NI+S GV G A Y +K + G S +L QE++ RN+ V
Sbjct: 119 TRELTHPMMR-RRYGRIINITSVVGVTGNPGQANYCASKAGMIGFSKSLAQEIATRNVTV 177
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIFALLQPSHSA 945
C+ G +++ + D+ K I A+P+ T E++ ++ + L S +A
Sbjct: 178 NCVAPGFIESAMTGKLNDK---QKEAIMGAIPMKRMGTGAEVASAVAY--LASSEAA 229
|
Length = 245 |
| >gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 59/192 (30%), Positives = 100/192 (52%), Gaps = 8/192 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG ++G+G+ L GA ++ + + + ++ + ++D
Sbjct: 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADII-ITTHGTNWDETRRLIEKEGRKVTFVQVD 71
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+T +KVV+E L E G IDILVNNAG + + +YK E+WNA++++N+ V H
Sbjct: 72 LTKPESAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQ 131
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAG---LAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ M + G I+NI+S + F G + YT +K+ + G++ A E++ NI+
Sbjct: 132 AVAKVMA-KQGSGKIINIAS---MLSFQGGKFVPAYTASKHGVAGLTKAFANELAAYNIQ 187
Query: 891 VTCIQAGDVKTE 902
V I G +KT
Sbjct: 188 VNAIAPGYIKTA 199
|
Length = 258 |
| >gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8 | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 9e-25
Identities = 68/249 (27%), Positives = 123/249 (49%), Gaps = 26/249 (10%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS-IIVKKLDV 774
+K+I +TG++ IG+ K L++ GA+++ LE LK L N + +I +LD+
Sbjct: 2 DKIILITGAAGLIGKAFCKALLSAGARLILADINAPALEQLKEELTNLYKNRVIALELDI 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGV---MYFTLMEKYKLEEWNAMINVNIKGVLHC 831
T + +K+++ L + G IDIL+NNA ++ + E++ E+WN ++NVN+ G C
Sbjct: 62 TSKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQWNEVLNVNLGGAFLC 121
Query: 832 IGNILPSMLHSRRPGHILNISSNAGV-----RPFAGL-----AVYTGTKYFIEGISGALR 881
+ + G I+NI+S GV R + Y+ K I ++ L
Sbjct: 122 SQAFIKLFKKQGK-GSIINIASIYGVIAPDFRIYENTQMYSPVEYSVIKAGIIHLTKYLA 180
Query: 882 QEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFAL 938
+ +D I+V I G + ++ + ++KY +K P +L +++ +IIF L
Sbjct: 181 KYYADTGIRVNAISPGGIL-----NNQPSEFLEKY--TKKCPLKRMLNPEDLRGAIIF-L 232
Query: 939 LQPSHSAVN 947
L + S V
Sbjct: 233 LSDASSYVT 241
|
This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 17/208 (8%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
K IF+TG++SGIG G +V A L L L G+ LDVT
Sbjct: 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAEL--GAGNAWTGALDVT- 58
Query: 777 ENDVKKVVREVLAEL-----GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D + LA+ G +D+L NNAG++ E LE + +I++N+KGVL+
Sbjct: 59 --D-RAAWDAALADFAAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNG 115
Query: 832 IGNILPSMLHSRRPG-HILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
LP PG ++N SS + + GLAVY+ TK+ + G++ AL E I+
Sbjct: 116 AHAALP--YLKATPGARVINTSSASAIYGQPGLAVYSATKFAVRGLTEALDLEWRRHGIR 173
Query: 891 VTCIQAGDVKTELLSHST---DRDVVDK 915
V + V T +L ++ D +
Sbjct: 174 VADVMPLFVDTAMLDGTSNEVDAGSTKR 201
|
Length = 260 |
| >gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 1/190 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKL 772
L KV F+TG +GIG+ + K LGA V R+ + LE + +A G +
Sbjct: 1 LKGKVAFITGGGTGIGKAIAKAFAELGASVAIAGRKPEVLEAAAEEISSATGGRAHPIQC 60
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV V+ V E L E G IDIL+NNA + E + +I++++ G +
Sbjct: 61 DVRDPEAVEAAVDETLKEFGKIDILINNAAGNFLAPAESLSPNGFKTVIDIDLNGTFNTT 120
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ ++ ++ G ILNIS+ K ++ ++ +L E I+V
Sbjct: 121 KAVGKRLIEAKHGGSILNISATYAYTGSPFQVHSAAAKAGVDALTRSLAVEWGPYGIRVN 180
Query: 893 CIQAGDVKTE 902
I G + T
Sbjct: 181 AIAPGPIPTT 190
|
TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249 |
| >gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 12/246 (4%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
LA +V VTG+ SGIG K GA+VV R + E + ++ A G ++
Sbjct: 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQG 60
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV V+ +V V A G +D+LVNNAG + +W+A++ VN+ GV
Sbjct: 61 DVGSAEAVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWA 120
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+P M + G I+N +S + G A Y +K I ++ A+ + + I+V
Sbjct: 121 KYAIPIM-QRQGGGSIVNTASQLALAGGRGRAAYVASKGAIASLTRAMALDHATDGIRVN 179
Query: 893 CIQAGDVKTELLSHS----TDRDVVDKYDISKAVPVL----TTKEISQSIIFALLQPSHS 944
+ G + T D + + + +A + T +E++Q+ +F S
Sbjct: 180 AVAPGTIDTPYFRRIFARHADPEALR--EALRARHPMNRFGTAEEVAQAALFLASDESSF 237
Query: 945 AVNSIL 950
A + L
Sbjct: 238 ATGTTL 243
|
Length = 252 |
| >gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12 | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-24
Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 25/202 (12%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV----------AVARRIDRLENLKTSLQNA 763
L KV VTG+ +GIG L GA+VV AV +I
Sbjct: 1 LEGKVAIVTGAGAGIGAACAARLAREGARVVVADIDGGAAQAVVAQI------------- 47
Query: 764 PGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFT-LMEKYKLEEWNAMIN 822
G + ++DVT E V + + E G +D+LVNNAG M+ T + L W+ +
Sbjct: 48 AGGALALRVDVTDEQQVAALFERAVEEFGGLDLLVNNAGAMHLTPAIIDTDLAVWDQTMA 107
Query: 823 VNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQ 882
+N++G C + P M+ +R G I+N+SS AG G Y +K I ++ L
Sbjct: 108 INLRGTFLCCRHAAPRMI-ARGGGSIVNLSSIAGQSGDPGYGAYGASKAAIRNLTRTLAA 166
Query: 883 EVSDRNIKVTCIQAGDVKTELL 904
E+ I+ + G + T LL
Sbjct: 167 ELRHAGIRCNALAPGLIDTPLL 188
|
These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246 |
| >gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9 | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-24
Identities = 57/190 (30%), Positives = 88/190 (46%), Gaps = 6/190 (3%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
K IF+TG++SGIG + G V D L L L +++ LDVT
Sbjct: 1 KAIFITGAASGIGRETALLFARNGWFVGLYDIDEDGLAALAAEL--GAENVVAGALDVTD 58
Query: 777 ENDVKKVVREVLAELG-HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+ + A G +D L NNAGV E L + M+++N+KGVL+
Sbjct: 59 RAAWAAALADFAAATGGRLDALFNNAGVGRGGPFEDVPLAAHDRMVDINVKGVLNGAYAA 118
Query: 836 LPSMLHSRRPG-HILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
LP PG ++N +S++ + LAVY+ TK+ + G++ AL E + I+V +
Sbjct: 119 LP--YLKATPGARVINTASSSAIYGQPDLAVYSATKFAVRGLTEALDVEWARHGIRVADV 176
Query: 895 QAGDVKTELL 904
V T +L
Sbjct: 177 WPWFVDTPIL 186
|
This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 9e-24
Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
LH + QA+RTPD IAVV D S+T+ +L+ + + L G S VGV + R
Sbjct: 1 LHELVEAQAERTPDAIAVVCGD-ESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRS 59
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117
+ ++ +A+ KAG Y+PL+ +YPP L +L+DA +V+T
Sbjct: 60 PDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLT 102
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 3/190 (1%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTSLQNAPG-SIIVKKLD 773
KV VTGS+SGIG + + L GA +V +E ++ L G ++ D
Sbjct: 2 GKVALVTGSTSGIGLGIARALAAAGANIVLNGFGDAAEIEAVRAGLAAKHGVKVLYHGAD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
++ ++ +V + G +DILVNNAG+ + +E + E+W+A+I +N+ V H
Sbjct: 62 LSKPAAIEDMVAYAQRQFGGVDILVNNAGIQHVAPIEDFPTEKWDAIIALNLSAVFHTTR 121
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
LP M + G I+NI+S G+ A + Y K+ + G++ + E + +
Sbjct: 122 LALPHM-KKQGWGRIINIASVHGLVASANKSAYVAAKHGVVGLTKVVALETAGTGVTCNA 180
Query: 894 IQAGDVKTEL 903
I G V T L
Sbjct: 181 ICPGWVLTPL 190
|
DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 3e-23
Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 5/159 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L + VTGSS GIG L + L GA+V+ R +L SL+ S D
Sbjct: 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFD 67
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + V+ + AE+G IDILVNNAG+ + T +E + + + ++ NI V + +G
Sbjct: 68 VTDHDAVRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFY-VG 126
Query: 834 NILPSMLHSRRPGHILNISS--NAGVRPFAGLAVYTGTK 870
+ + +R G I+NI+S +A RP G+A YT TK
Sbjct: 127 QAVARHMIARGAGKIINIASVQSALARP--GIAPYTATK 163
|
Length = 255 |
| >gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 4e-23
Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 32/243 (13%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
K + VTG+SSGIG L GA+VVA AR L+ L + + +LDV
Sbjct: 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG--ETGCEPL---RLDVGD 64
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEK---YKLEEWNAMINVNIKGVLHCIG 833
+ +R LA G D LVN AG+ +E E ++ ++ VN +G
Sbjct: 65 D----AAIRAALAAAGAFDGLVNCAGI---ASLESALDMTAEGFDRVMAVNARGAALVAR 117
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
++ +M+ + R G I+N+SS A + Y +K ++ I+ L E+ I+V
Sbjct: 118 HVARAMIAAGRGGSIVNVSSQAALVGLPDHLAYCASKAALDAITRVLCVELGPHGIRVNS 177
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---------TTKEISQSIIFALLQPSHS 944
+ T + + + D K+ P+L +++ I+F LL + S
Sbjct: 178 VNPTVTLTPMAAEAWS-------DPQKSGPMLAAIPLGRFAEVDDVAAPILF-LLSDAAS 229
Query: 945 AVN 947
V+
Sbjct: 230 MVS 232
|
Length = 245 |
| >gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 5e-23
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 22/172 (12%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVK--K 771
L +KV VTG S GIG+ +V L G+ V+ + P V K
Sbjct: 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK-------------EPSYNDVDYFK 50
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+DV+ + V K + V+++ G IDILVNNAG+ + + + +EW+ +INVN+ G+
Sbjct: 51 VDVSNKEQVIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLM 110
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFA---GLAVYTGTKYFIEGISGAL 880
+P ML + G I+NI+S V+ FA A Y +K+ + G++ ++
Sbjct: 111 SKYTIPYMLKQDK-GVIINIAS---VQSFAVTRNAAAYVTSKHAVLGLTRSI 158
|
Length = 258 |
| >gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 7e-23
Identities = 56/187 (29%), Positives = 88/187 (47%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
KV VTG + GIG+ + + L G V + + + A G + KLDV+
Sbjct: 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD 60
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
++ V + + + G D++VNNAGV T + + EE + NVN+KGVL I
Sbjct: 61 KDQVFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAA 120
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
G I+N +S AG L+ Y+ TK+ + G++ QE++ + I V
Sbjct: 121 RQFKKQGHGGKIINAASIAGHEGNPILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCP 180
Query: 897 GDVKTEL 903
G VKT +
Sbjct: 181 GIVKTPM 187
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254 |
| >gnl|CDD|187641 cd08936, CR_SDR_c, Porcine peroxisomal carbonyl reductase like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 7e-23
Identities = 60/190 (31%), Positives = 99/190 (52%), Gaps = 4/190 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LANKV VT S+ GIG + + L GA VV +R+ ++ +LQ S+
Sbjct: 8 LANKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGTVCH 67
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGV--MYFTLMEKYKLEEWNAMINVNIKGVLHC 831
V D +++V + G +DILV+NA V + +++ + E W+ +++VN+K
Sbjct: 68 VGKAEDRERLVATAVNLHGGVDILVSNAAVNPFFGNILDSTE-EVWDKILDVNVKATALM 126
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
++P M R G ++ +SS A PF GL Y +K + G++ L E++ RNI+V
Sbjct: 127 TKAVVPEM-EKRGGGSVVIVSSVAAFHPFPGLGPYNVSKTALLGLTKNLAPELAPRNIRV 185
Query: 892 TCIQAGDVKT 901
C+ G +KT
Sbjct: 186 NCLAPGLIKT 195
|
This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 8e-23
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD +AVV +S+T+++L+E + + YL +G G V + +ER E ++ +A+ K
Sbjct: 1 PDAVAVVF-GDQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLK 59
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120
AG Y+PL+ +YP L +L+D+ +++T +
Sbjct: 60 AGAAYVPLDPAYPAERLAYMLEDSGAKLLLTDPD 93
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 9e-23
Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 1/181 (0%)
Query: 721 VTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDV 780
V G+SSGIG +L G V ARR+++ E L ++ G + LDVT + V
Sbjct: 15 VAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSV 74
Query: 781 KKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSML 840
K V + LG I++LV+ AG YF + + E++ + + +++ G +LP M+
Sbjct: 75 KSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMI 134
Query: 841 HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVK 900
RR G ++ + S+ +R + Y K +E + L+ E+ ++ + + G
Sbjct: 135 -ERRRGDLIFVGSDVALRQRPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTL 193
Query: 901 T 901
T
Sbjct: 194 T 194
|
Length = 274 |
| >gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 1e-22
Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV +TG++SGIGE + + + GA+VV + R +L+ P +I V LD
Sbjct: 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARAR--LAALEIGPAAIAVS-LD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTL--MEKYKLEEWNAMINVNIKGVLHC 831
VT ++ + ++V + G IDIL NNA + F + + + ++ + VN+KG+
Sbjct: 61 VTRQDSIDRIVAAAVERFGGIDILFNNAAL--FDMAPILDISRDSYDRLFAVNVKGLFFL 118
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI--SGALRQEVSDRNI 889
+ + M+ R G I+N++S AG R A ++ Y TK + S AL + I
Sbjct: 119 MQAVARHMVEQGRGGKIINMASQAGRRGEALVSHYCATKAAVISYTQSAAL--ALIRHGI 176
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVD 914
V I G V T + D VD
Sbjct: 177 NVNAIAPGVVDTPMW------DQVD 195
|
Length = 257 |
| >gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-22
Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 13/215 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+KV VTG++ GIG+ + L GA VV + E + + G+ I ++D
Sbjct: 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVD 63
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNA---GVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
V+ + K + ++ G ID LVNNA G M L+ + + ++VN+ G L
Sbjct: 64 VSDPDSAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALV 123
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRP--FAGLAVYTGTKYFIEGISGALRQEVSDRN 888
C + M R G I+N SS A F GLA K + G++ L +E+ N
Sbjct: 124 CTRAVYKHMA-KRGGGAIVNQSSTAAWLYSNFYGLA-----KVGLNGLTQQLARELGGMN 177
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I+V I G + TE T ++ V D+ K +P
Sbjct: 178 IRVNAIAPGPIDTEATRTVTPKEFVA--DMVKGIP 210
|
Length = 250 |
| >gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 2e-22
Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
KV+ +TG SSG+G+ + K GA VV R ++LE K ++ PG ++ ++DV
Sbjct: 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVR 60
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
DV+K+V ++ + G ID L+NNA + E + WN++I++ + G +C +
Sbjct: 61 NPEDVQKMVEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAV 120
Query: 836 LPSMLHSRRPGHILNI------SSNAGVRPFAG-----------LAVYTGTKYFI 873
+ G+I+N+ + GV A LAV G KY I
Sbjct: 121 GKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGI 175
|
Length = 252 |
| >gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 2e-22
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 11/189 (5%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
KV +T ++ GIG + GA V+A D E L+ PG I + LDVT
Sbjct: 3 KVALITAAAQGIGRAIALAFAREGANVIAT----DINEEKLKELERGPG-ITTRVLDVT- 56
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
K+ V + E G ID+L N AG ++ + + ++W+ +N+N++ + I +L
Sbjct: 57 ---DKEQVAALAKEEGRIDVLFNCAGFVHHGSILDCEDDDWDFAMNLNVRSMYLMIKAVL 113
Query: 837 PSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
P ML +R+ G I+N+SS A ++ VY+ TK + G++ ++ + + + I+ I
Sbjct: 114 PKML-ARKDGSIINMSSVASSIKGVPNRFVYSTTKAAVIGLTKSVAADFAQQGIRCNAIC 172
Query: 896 AGDVKTELL 904
G V T L
Sbjct: 173 PGTVDTPSL 181
|
Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241 |
| >gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 10/229 (4%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
VI +TG+S GIG L ++L+ G + VV +AR + L+ LK L+ + K D++
Sbjct: 1 VIILTGASRGIGRALAEELLKRGSPSVVVLLARSEEPLQELKEELRPGL-RVTTVKADLS 59
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
V++++ + G D+L+NNAG + + +E L+E ++N+ +
Sbjct: 60 DAAGVEQLLEAIRKLDGERDLLINNAGSLGPVSKIEFIDLDELQKYFDLNLTSPVCLTST 119
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
+L + ++N+SS A V PF G +Y +K + L E D ++V
Sbjct: 120 LLRAFKKRGLKKTVVNVSSGAAVNPFKGWGLYCSSKAARDMFFRVLAAEEPD--VRVLSY 177
Query: 895 QAGDVKT----ELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALL 939
G V T E+ S D + ++ K L E S + LL
Sbjct: 178 APGVVDTDMQREIRETSADPETRSRFRSLKEKGELLDPEQSAEKLANLL 226
|
Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241 |
| >gnl|CDD|132368 TIGR03325, BphB_TodD, cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 2e-22
Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 11/195 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +V+ VTG +SG+G +V V GA+V + + L+ L+ + +++ + D
Sbjct: 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA---HGDAVVGVEGD 59
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM-YFT----LMEKYKLEEWNAMINVNIKGV 828
V +D K+ V +A G ID L+ NAG+ Y T + + E ++ + ++N+KG
Sbjct: 60 VRSLDDHKEAVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGY 119
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
L + LP+++ SR G ++ SNAG P G +YT K+ + G+ L E++
Sbjct: 120 LLAVKAALPALVASR--GSVIFTISNAGFYPNGGGPLYTAAKHAVVGLVKELAFELAPY- 176
Query: 889 IKVTCIQAGDVKTEL 903
++V + G + ++L
Sbjct: 177 VRVNGVAPGGMSSDL 191
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. Length = 262 |
| >gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 3e-22
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 12/194 (6%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKK 771
+L KV VTG+++G+G+ + L GA +V R + +L S+
Sbjct: 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSL---T 58
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D++ +K +V + E GHIDILVNNAG++ E++ ++W+ ++NVN+K V
Sbjct: 59 ADLSDIEAIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFL 118
Query: 832 IGNILPSMLHSRRPGHILNISS----NAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
L R G I+NI+S G+R + YT +K+ + G++ L E + +
Sbjct: 119 TQAAAKHFLKQGRGGKIINIASMLSFQGGIR----VPSYTASKHAVAGLTKLLANEWAAK 174
Query: 888 NIKVTCIQAGDVKT 901
I V I G + T
Sbjct: 175 GINVNAIAPGYMAT 188
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248 |
| >gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 5e-22
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 6/192 (3%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKLD 773
A+KV+ VTG S GIG +V+ V GAKVV AR + L++ L A PGS D
Sbjct: 8 ADKVVIVTGGSRGIGRGIVRAFVENGAKVVFCARGEAAGQALESELNRAGPGSCKFVPCD 67
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHC 831
VT E D+K ++ + G ID LVNNAG + ++ +E+ ++N+N+
Sbjct: 68 VTKEEDIKTLISVTVERFGRIDCLVNNAG-WHPPHQTTDETSAQEFRDLLNLNLISYFLA 126
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
LP + S+ G+I+N+SS G A Y TK I ++ AL + S ++V
Sbjct: 127 SKYALPHLRKSQ--GNIINLSSLVGSIGQKQAAPYVATKGAITAMTKALAVDESRYGVRV 184
Query: 892 TCIQAGDVKTEL 903
CI G++ T L
Sbjct: 185 NCISPGNIWTPL 196
|
These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261 |
| >gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 5e-22
Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 14/234 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKL 772
+ KV VTGSS GIG+ + L G + AR E ++ + K
Sbjct: 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKA 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNA--GVMYFTLMEKYKLEE--WNAMINVNIKGV 828
+V +K++ ++ E G +D+ VNNA GV+ ME LEE W+ +N+N K +
Sbjct: 62 NVGDVEKIKEMFAQIDEEFGRLDVFVNNAASGVLR-PAME---LEESHWDWTMNINAKAL 117
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
L C M G I+++SS +R +K +E ++ L E++ +
Sbjct: 118 LFCAQEAAKLME-KVGGGKIISLSSLGSIRYLENYTTVGVSKAALEALTRYLAVELAPKG 176
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALL 939
I V + G V T+ L H +R+ + + D P ++ ++++ +++F
Sbjct: 177 IAVNAVSGGAVDTDALKHFPNREELLE-DARAKTPAGRMVEPEDVANAVLFLCS 229
|
Length = 250 |
| >gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 6e-22
Identities = 65/202 (32%), Positives = 101/202 (50%), Gaps = 17/202 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG ++GIGE +V+ GAKV V + D +N+ SL P D
Sbjct: 16 LLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFH-CD 74
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM--YFTLMEKYKLEEWNAMINVNIKGVLHC 831
VT+E+DV + V + + G +DI+VNNAG+ + +L E+ + +VN+KGV
Sbjct: 75 VTVEDDVSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFL- 133
Query: 832 IGNILPSMLHSRR------PGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
M H+ R G I+++ S A G YTG+K+ + G++ ++ E+
Sbjct: 134 ------GMKHAARIMIPLKKGSIVSLCSVASAIGGLGPHAYTGSKHAVLGLTRSVAAELG 187
Query: 886 DRNIKVTCIQAGDVKTEL-LSH 906
I+V C+ V T L L+H
Sbjct: 188 KHGIRVNCVSPYAVPTALALAH 209
|
Length = 280 |
| >gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 9e-22
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 13/193 (6%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGA------KVVAVARRIDRLENLKTSLQN-APGSIIV 769
V+ +TG SSGIG L V L + KV A R + + L + A G++
Sbjct: 1 TVVLITGCSSGIGLHLA---VRLASDPSKRFKVYATMRDLKKKGRLWEAAGALAGGTLET 57
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
+LDV V V V H+D+LV NAGV +E + ++ +VN+ G +
Sbjct: 58 LQLDVCDSKSVAAAVERVTE--RHVDVLVCNAGVGLLGPLEALSEDAMASVFDVNVFGTV 115
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ LP M R G IL SS G++ VY +K+ +EG+ +L ++ N+
Sbjct: 116 RMLQAFLPDM-KRRGSGRILVTSSVGGLQGLPFNDVYCASKFALEGLCESLAVQLLPFNV 174
Query: 890 KVTCIQAGDVKTE 902
++ I+ G V T
Sbjct: 175 HLSLIECGPVHTA 187
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|180408 PRK06114, PRK06114, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 1e-21
Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 10/194 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN---APGSIIVK 770
L +V FVTG+ SGIG+++ L GA V R D + L + ++ A I
Sbjct: 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTD--DGLAETAEHIEAAGRRAIQI 63
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV-L 829
DVT + D++ V AELG + + VN AG+ E+ + E+W ++++N+ GV L
Sbjct: 64 AADVTSKADLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFL 123
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL--AVYTGTKYFIEGISGALRQEVSDR 887
C +ML + G I+NI+S +G+ GL A Y +K + +S +L E R
Sbjct: 124 SCQAEA-RAMLENGG-GSIVNIASMSGIIVNRGLLQAHYNASKAGVIHLSKSLAMEWVGR 181
Query: 888 NIKVTCIQAGDVKT 901
I+V I G T
Sbjct: 182 GIRVNSISPGYTAT 195
|
Length = 254 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 1e-21
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD IA+V + RS+T+ +L+E + + L +G G V +L+ER E ++ +AI K
Sbjct: 1 PDAIALV-YGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILK 59
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
AG Y+PL+ +YP L +L+D+ +++T
Sbjct: 60 AGAAYVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLAR 99
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (235), Expect = 2e-21
Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 2/194 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVA-VARRIDRLENLKTSLQNAPGSIIVKK 771
L KV VTG + GIG+ + L GAKVV + ENL L + +
Sbjct: 3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQ 62
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV+ D ++V E + G +DILVNNAG+ +K E+W +I+VN+ V +
Sbjct: 63 ADVSKVEDANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNT 122
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+LP + + G I++ISS G G Y+ K + G + +L E++ N+ V
Sbjct: 123 TSAVLPYITEAEE-GRIISISSIIGQAGGFGQTNYSAAKAGMLGFTKSLALELAKTNVTV 181
Query: 892 TCIQAGDVKTELLS 905
I G + TE+++
Sbjct: 182 NAICPGFIDTEMVA 195
|
Length = 247 |
| >gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 2e-21
Identities = 58/191 (30%), Positives = 84/191 (43%), Gaps = 1/191 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +K VTG GIG + GAKV + E + ++ G+ D
Sbjct: 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+T + V V LG +D+LVNNAG F K + W +I +N+ G LH
Sbjct: 61 ITDRDSVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHH 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+LP M+ R G I+NI+S+A +G AVY K + S + +E + I V
Sbjct: 121 AVLPGMVE-RGAGRIVNIASDAARVGSSGEAVYAACKGGLVAFSKTMAREHARHGITVNV 179
Query: 894 IQAGDVKTELL 904
+ G T LL
Sbjct: 180 VCPGPTDTALL 190
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250 |
| >gnl|CDD|187606 cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 6e-21
Identities = 54/196 (27%), Positives = 98/196 (50%), Gaps = 11/196 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +V +TG SG+G LV+ V GAKV + R +++ L+ +A ++ + D
Sbjct: 2 LKGEVALITGGGSGLGRALVERFVAEGAKVAVLDRSAEKVAELRADFGDA---VVGVEGD 58
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKY---KLEE-WNAMINVNIKGV 828
V D ++ V + G +D + NAG+ Y T + KL+E ++ + ++N+KG
Sbjct: 59 VRSLADNERAVARCVERFGKLDCFIGNAGIWDYSTSLVDIPEEKLDEAFDELFHINVKGY 118
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ LP++ + G ++ SNAG P G +YT +K+ + G+ L E++
Sbjct: 119 ILGAKAALPALYATE--GSVIFTVSNAGFYPGGGGPLYTASKHAVVGLVKQLAYELAPH- 175
Query: 889 IKVTCIQAGDVKTELL 904
I+V + G + T+L
Sbjct: 176 IRVNGVAPGGMVTDLR 191
|
cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 7e-21
Identities = 60/241 (24%), Positives = 116/241 (48%), Gaps = 24/241 (9%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
+TG+S GIG + ++L ++ R +RL+ L L A +D+T
Sbjct: 4 PTALITGASRGIGAAIARELAP-THTLLLGGRPAERLDELAAELPGATPFP----VDLTD 58
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+ + +LG +D+LV+NAGV + + ++EW A + VN+ +L
Sbjct: 59 PEAI----AAAVEQLGRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLL 114
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
P+ L + GH++ I+S AG+R G Y +K+ + ++ ALR+E N++VT +
Sbjct: 115 PA-LRAAH-GHVVFINSGAGLRANPGWGSYAASKFALRALADALREEEPG-NVRVTSVHP 171
Query: 897 GDVKTELLSHSTDRDVVDK----YDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952
G T++ R +V + YD + L + +++++ FA+ P + + +++
Sbjct: 172 GRTDTDMQ-----RGLVAQEGGEYDPER---YLRPETVAKAVRFAVDAPPDAHITEVVVR 223
Query: 953 P 953
P
Sbjct: 224 P 224
|
Length = 227 |
| >gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-20
Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 18/231 (7%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVA-VARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+V+ VTG+S G+G + + GA+VV R + E + I + DV
Sbjct: 1 QVVLVTGASRGLGAAIARSFAREGARVVVNYYRSTESAEAVAAEAG---ERAIAIQADVR 57
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLE--EW---NAMINVNIKGVL 829
+ V+ ++ E G +D +VNNA + + F ++ + +W + +KG L
Sbjct: 58 DRDQVQAMIEEAKNHFGPVDTIVNNALIDFPFDPDQRKTFDTIDWEDYQQQLEGAVKGAL 117
Query: 830 HCIGNILPSMLHSRRPGHILNISSN---AGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
+ + +LP R G ++NI +N V P+ YT K + G + + +E+
Sbjct: 118 NLLQAVLPDF-KERGSGRVINIGTNLFQNPVVPYHD---YTTAKAALLGFTRNMAKELGP 173
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIF 936
I V + G +K S +T ++V D + V T ++I+ +++F
Sbjct: 174 YGITVNMVSGGLLKVTDASAATPKEVFDAIAQTTPLGKVTTPQDIADAVLF 224
|
This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 14/195 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+ KV+ VTG++ GIG V+ L+ GA KV A AR + + +L P ++ +L
Sbjct: 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTDL------GPR-VVPLQL 56
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHC 831
DVT V + ILVNNAG+ +L+ + + A + N G L
Sbjct: 57 DVTDPAS----VAAAAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAM 112
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
P +L + G I+N+ S F L Y+ +K ++ ALR E++ + +V
Sbjct: 113 ARAFAP-VLAANGGGAIVNVLSVLSWVNFPNLGTYSASKAAAWSLTQALRAELAPQGTRV 171
Query: 892 TCIQAGDVKTELLSH 906
+ G + T++ +
Sbjct: 172 LGVHPGPIDTDMAAG 186
|
Length = 238 |
| >gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-20
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
K + +TG++SGIG + + GA+V V D+ + S G+ +LD++
Sbjct: 5 TKTVLITGAASGIGLAQARAFLAQGAQVYGV----DKQDKPDLS-----GNFHFLQLDLS 55
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVM--YFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+D++ + V +DIL N AG++ Y L++ LEEW + + N+
Sbjct: 56 --DDLEPLFDWV----PSVDILCNTAGILDDYKPLLDT-SLEEWQHIFDTNLTSTFLLTR 108
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
LP ML R+ G I+N+ S A G A YT +K+ + G + L + + I+V
Sbjct: 109 AYLPQML-ERKSGIIINMCSIASFVAGGGGAAYTASKHALAGFTKQLALDYAKDGIQVFG 167
Query: 894 IQAGDVKT 901
I G VKT
Sbjct: 168 IAPGAVKT 175
|
Length = 235 |
| >gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 2e-20
Identities = 58/198 (29%), Positives = 84/198 (42%), Gaps = 19/198 (9%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA +V VTGS+ G+G ++ + L GA V+ R LE +L+ A G+ D
Sbjct: 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFD 68
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ E V + AE G +DILVNN G + + A++
Sbjct: 69 IADEEAVAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLET---------- 118
Query: 834 NILPSMLHSR-------RPGH--ILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV 884
+++ +L SR R G+ I+ I+S AG AG AVY K + G+ AL E
Sbjct: 119 DLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARAGDAVYPAAKQGLTGLMRALAAEF 178
Query: 885 SDRNIKVTCIQAGDVKTE 902
I I G TE
Sbjct: 179 GPHGITSNAIAPGYFATE 196
|
Length = 256 |
| >gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 2e-20
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 3/190 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKT--SLQNAPGSIIVKK 771
L KV+ +TG S+G+G + AKVV + R D E ++ A G I K
Sbjct: 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVV-INYRSDEEEANDVAEEIKKAGGEAIAVK 63
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DVT+E+DV +++ + E G +D+++NNAG+ + LE+WN +IN N+ G
Sbjct: 64 GDVTVESDVVNLIQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLG 123
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ + G+I+N+SS P+ Y +K ++ ++ L E + + I+V
Sbjct: 124 SREAIKYFVEHDIKGNIINMSSVHEQIPWPLFVHYAASKGGVKLMTETLAMEYAPKGIRV 183
Query: 892 TCIQAGDVKT 901
I G + T
Sbjct: 184 NNIGPGAINT 193
|
Length = 261 |
| >gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 2e-20
Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIV 769
F L VTG+ SGIG + GA+VVA E ++ A
Sbjct: 313 FSGKLV----VVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHA 368
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
++DV+ + ++ V AE G DI+VNNAG+ E+W+ +++VN+ GV+
Sbjct: 369 YRVDVSDADAMEAFAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVI 428
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
H M+ GHI+N++S A P L Y +K + +S LR E++ I
Sbjct: 429 HGCRLFGRQMVERGTGGHIVNVASAAAYAPSRSLPAYATSKAAVLMLSECLRAELAAAGI 488
Query: 890 KVTCIQAGDVKT 901
VT I G V T
Sbjct: 489 GVTAICPGFVDT 500
|
Length = 582 |
| >gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 11/195 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +V +TG SGIG LV+ + GA+V + R ++L +L+ + ++V + D
Sbjct: 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDH---VLVVEGD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNA----MINVNIKGV 828
VT D ++ V + + G +D V NAG+ Y T + E + + NVN+KG
Sbjct: 61 VTSYADNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGY 120
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
L LP++ S G ++ SN+ P G +YT +K+ + G+ L E++ +
Sbjct: 121 LLGAKAALPALKASG--GSMIFTLSNSSFYPGGGGPLYTASKHAVVGLVRQLAYELAPK- 177
Query: 889 IKVTCIQAGDVKTEL 903
I+V + G T+L
Sbjct: 178 IRVNGVAPGGTVTDL 192
|
Length = 263 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 2e-20
Identities = 80/320 (25%), Positives = 136/320 (42%), Gaps = 49/320 (15%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKC----TLFCPVRETPNKTLLQRLEDIM---LKYHMS 373
+VL+TG TG+LG LL+K L C ++ +R ++ +RL +++ L
Sbjct: 2 SVLITGATGFLGKVLLEKLL--RSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGR 59
Query: 374 LDLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSN 433
+ +++ ++ DLS LGL ++D +L E+++IIH AA V + N
Sbjct: 60 NLNPLFESKIVPIEGDLSEPNLGLSDED-LQTLIEEVNIIIHCAATVTFDERLDEALSIN 118
Query: 434 VLATKNLIEFSF-LNKIKSFHYVST-----------DSIYPSTSENFQEDYTVAD-FDDF 480
VL T L+E + K+K+F +VST + +YP + ++ + + DD
Sbjct: 119 VLGTLRLLELAKRCKKLKAFVHVSTAYVNGDRQLIEEKVYP-PPADPEKLIDILELMDDL 177
Query: 481 MTTTSG----------YGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEF------KN 524
+ Y +K ++E LVL LP+ IVR +G +L+ N
Sbjct: 178 ELERATPKLLGGHPNTYTFTKALAERLVLKERG-NLPLVIVRPSIVGATLKEPFPGWIDN 236
Query: 525 WNLVD-LNLYILKAITRLGYAPDIDWYLEFTPVDF----LTKSLVQLTTNVNNANKIYNF 579
+N D L L K I R A D + + PVD L + ++Y+
Sbjct: 237 FNGPDGLFLAYGKGILRTMNA-DPNAVADIIPVDVVANALLAAAAYSGVRKPRELEVYHC 295
Query: 580 I--NTNPIHIKTLVSVLNTY 597
+ NP ++N Y
Sbjct: 296 GSSDVNPFTWGEAEELINQY 315
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 2e-20
Identities = 37/99 (37%), Positives = 62/99 (62%), Gaps = 4/99 (4%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD IA+ D D R++++ +LDE ++ + L G G VGVL+ER + + +AI K
Sbjct: 1 PDAIALRDDD-RTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILK 59
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGE---YM 122
AG Y+PL+ SYP L+ +L+DA+P++++T + Y+
Sbjct: 60 AGAAYVPLDPSYPAERLQYMLEDAEPALLLTDPDDLAYV 98
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 3/188 (1%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-RLENLKTSLQNAPGSIIVKKLDVTIE 777
+ +TG++SG+G + G ++ A+A + E L+ A G ++ DV
Sbjct: 3 VMITGAASGLGRAIALRWAREGWRL-ALADVNEEGGEETLKLLREAGGDGFYQRCDVRDY 61
Query: 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILP 837
+ + + + + G ID++VNNAGV E+ LE+W+ I +N+ GV+ LP
Sbjct: 62 SQLTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLP 121
Query: 838 SMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAG 897
+ ++ G I+NI+S AG+ ++ Y K + +S L E++D I V +
Sbjct: 122 -LFKRQKSGRIVNIASMAGLMQGPAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPS 180
Query: 898 DVKTELLS 905
+T LL
Sbjct: 181 FFQTNLLD 188
|
Length = 270 |
| >gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 3e-20
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 13/203 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L NKV +TG + +G + + L GAKV A+ R ++ + + + G I D
Sbjct: 3 LKNKVAVITGGTGVLGGAMARALAQAGAKVAALGRNQEKGDKVAKEITALGGRAIALAAD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY---FTLMEKYKLEEWNAMINVNIKGVLH 830
V +++ E++A+ G +DIL+N AG + T E Y+ E +++ +G
Sbjct: 63 VLDRASLERAREEIVAQFGTVDILINGAGGNHPDATTDPEHYEPETEQNFFDLDEEGWEF 122
Query: 831 CI-----GNILPSMLHSR-----RPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGAL 880
G+ LPS + + + G I+NISS P + Y+ K + + L
Sbjct: 123 VFDLNLNGSFLPSQVFGKDMLEQKGGSIINISSMNAFSPLTKVPAYSAAKAAVSNFTQWL 182
Query: 881 RQEVSDRNIKVTCIQAGDVKTEL 903
E + ++V I G T
Sbjct: 183 AVEFATTGVRVNAIAPGFFVTPQ 205
|
D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271 |
| >gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 4e-20
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 12/196 (6%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
V+ +TG SSGIG L G +V A AR+ + +E L + A +LDV
Sbjct: 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTA------VQLDVND 55
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+ ++ E+ AE G +D+L+NNAG + +E N+ V+ +
Sbjct: 56 GAALARLAEELEAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALF 115
Query: 837 PSMLHSRRPGHILNISSNAGV--RPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
P + SR G ++NI S +GV PFAG Y +K + +S ALR E++ ++V +
Sbjct: 116 PLLRRSR--GLVVNIGSVSGVLVTPFAG--AYCASKAAVHALSDALRLELAPFGVQVMEV 171
Query: 895 QAGDVKTELLSHSTDR 910
Q G + ++ S+++
Sbjct: 172 QPGAIASQFASNASRE 187
|
Length = 274 |
| >gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 5e-20
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 16/213 (7%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVK 770
GNT I +TG +SGIG L K + LG V+ R +RL K I +
Sbjct: 5 GNT-----ILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPE----IHTE 55
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMY---FTLMEKYKLEEWNAMINVNIKG 827
DV + +++V + E ++++L+NNAG+ T E L++ I N+
Sbjct: 56 VCDVADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDL-LDDAEQEIATNLLA 114
Query: 828 VLHCIGNILPSMLHSRRP-GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
+ +LP +L R+P I+N+SS P A VY TK I + ALR+++ D
Sbjct: 115 PIRLTALLLPHLL--RQPEATIINVSSGLAFVPMASTPVYCATKAAIHSYTLALREQLKD 172
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDIS 919
+++V + V T + + IS
Sbjct: 173 TSVEVIELAPPLVDTTEGNTQARGKMPLSAFIS 205
|
Length = 245 |
| >gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 7e-20
Identities = 55/217 (25%), Positives = 108/217 (49%), Gaps = 8/217 (3%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
++A K++ VTG S GIG + + + GA+V+ AR+ + + L +A G I
Sbjct: 3 SVAGKIVLVTGGSRGIGRMIAQGFLEAGARVIISARKAEACADAAEEL-SAYGECIAIPA 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D++ E ++ +V V +D+LVNNAG + +E + W+ ++++N+K V
Sbjct: 62 DLSSEEGIEALVARVAERSDRLDVLVNNAGATWGAPLEAFPESGWDKVMDINVKSVFFLT 121
Query: 833 GNILPSMLHSR---RPGHILNISSNAGVRPFAGLAVYT--GTKYFIEGISGALRQEVSDR 887
+LP + + P ++NI S AG+ +GL Y+ +K + ++ L +E++
Sbjct: 122 QALLPLLRAAATAENPARVINIGSIAGIV-VSGLENYSYGASKAAVHQLTRKLAKELAGE 180
Query: 888 NIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+I V I G +++ + + D K++P+
Sbjct: 181 HITVNAIAPGRFPSKMTAFLLN-DPAALEAEEKSIPL 216
|
Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|171822 PRK12938, PRK12938, acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 9e-20
Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 15/217 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVA-----VARRIDRLENLKTSLQNAPG-SI 767
++ ++ +VTG GIG + + L G KVVA RR+ LE+ Q A G
Sbjct: 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLED-----QKALGFDF 55
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKG 827
I + +V + K +V AE+G ID+LVNNAG+ + K E+W A+I+ N+
Sbjct: 56 IASEGNVGDWDSTKAAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTS 115
Query: 828 VLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
+ + ++ M+ R G I+NISS G + G Y+ K I G + +L QEV+ +
Sbjct: 116 LFNVTKQVIDGMV-ERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATK 174
Query: 888 NIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ V + G + T+++ + DV++K I +PV
Sbjct: 175 GVTVNTVSPGYIGTDMVK-AIRPDVLEK--IVATIPV 208
|
Length = 246 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 1e-19
Identities = 55/210 (26%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
+K + VTG++ GIG+ V+ L+ GA KV A R +L + ++ +LDV
Sbjct: 3 DKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAHL---VAKYGDKVVPLRLDV 59
Query: 775 T-IENDVKKVVREVLAELGHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCI 832
T E+ ++ A+ +D+++NNAGV+ TL+E+ LE ++VN+ G+L
Sbjct: 60 TDPES-----IKAAAAQAKDVDVVINNAGVLKPATLLEEGALEALKQEMDVNVFGLLRLA 114
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P +L + G I+N++S A ++ F + Y+ +K ++ LR E++ + V
Sbjct: 115 QAFAP-VLKANGGGAIVNLNSVASLKNFPAMGTYSASKSAAYSLTQGLRAELAAQGTLVL 173
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAV 922
+ G + T + + + +++AV
Sbjct: 174 SVHPGPIDTRMAAGA-GGPKESPETVAEAV 202
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 11/211 (5%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVK-- 770
+L KV VTG S GIG + + L GA V + R E L G VK
Sbjct: 5 SLKGKVAIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEELAKKYG---VKTK 61
Query: 771 --KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
K DV+ + V+K +++ + G IDIL+ NAG+ Y E+WN +I+VN+ GV
Sbjct: 62 AYKCDVSSQESVEKTFKQIQKDFGKIDILIANAGITVHKPALDYTYEQWNKVIDVNLNGV 121
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL--AVYTGTKYFIEGISGALRQEVSD 886
+C + G ++ +S +G A Y +K + ++ +L E +
Sbjct: 122 FNCAQAAAKIFKKQGK-GSLIITASMSGTIVNRPQPQAAYNASKAAVIHLAKSLAVEWAK 180
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYD 917
I+V I G + T+L D+++ K++
Sbjct: 181 YFIRVNSISPGYIDTDLTDF-VDKELRKKWE 210
|
NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 2e-19
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGS 65
AE L + A+R PD+ A++ G +T+++LD + + L G G
Sbjct: 5 MRMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGD 64
Query: 66 TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
V +L+ E+ I+++A +AG +PL P L +L+DA ++IT E+ L
Sbjct: 65 RVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALL 124
Query: 126 ER 127
E
Sbjct: 125 EA 126
|
Length = 534 |
| >gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 2e-19
Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 2/193 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TG+S+GIG+++ V GA+V AR +D LE L + + G ++ D
Sbjct: 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ V ++ +V AELG IDI V NAG++ T M LEE+ + N N+ GV
Sbjct: 67 VSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQ 126
Query: 834 NILPSMLHSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+M+ + G I+N +S +G + ++ Y +K + ++ A+ E++ I+V
Sbjct: 127 AAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHYCASKAAVIHLTKAMAVELAPHKIRV 186
Query: 892 TCIQAGDVKTELL 904
+ G + TEL+
Sbjct: 187 NSVSPGYILTELV 199
|
Length = 253 |
| >gnl|CDD|135637 PRK05876, PRK05876, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 2e-19
Identities = 54/193 (27%), Positives = 99/193 (51%), Gaps = 12/193 (6%)
Query: 721 VTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR------LENLKTSLQNAPGSIIVKKLDV 774
+TG +SGIG + GA+VV +D+ + +L+ + G + DV
Sbjct: 11 ITGGASGIGLATGTEFARRGARVVLG--DVDKPGLRQAVNHLRAEGFDVHGVMC----DV 64
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
+V + E LGH+D++ +NAG++ + + ++W +I+V++ G +H +
Sbjct: 65 RHREEVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEA 124
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
LP +L GH++ +S AG+ P AGL Y KY + G++ L +EV+ I V+ +
Sbjct: 125 FLPRLLEQGTGGHVVFTASFAGLVPNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVL 184
Query: 895 QAGDVKTELLSHS 907
V+T L+++S
Sbjct: 185 CPMVVETNLVANS 197
|
Length = 275 |
| >gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 5e-19
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 7/191 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
KV+ VTG++ GIG + + L GA+V+ V R + + + + A + V D
Sbjct: 2 FEGKVVVVTGAAQGIGRGVAERLAGEGARVLLVDRS-ELVHEVLAEILAAGDAAHVHTAD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNA-GVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+ + VVR + G +D+L+NN G ++ E Y+ E+ A I ++ L C
Sbjct: 61 LETYAGAQGVVRAAVERFGRVDVLINNVGGTIWAKPYEHYEEEQIEAEIRRSLFPTLWCC 120
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAV-YTGTKYFIEGISGALRQEVSDRNIKV 891
+LP ML R+ G I+N+SS A R + Y+ K + ++ +L E + I+V
Sbjct: 121 RAVLPHML-ERQQGVIVNVSSIA-TR--GIYRIPYSAAKGGVNALTASLAFEHARDGIRV 176
Query: 892 TCIQAGDVKTE 902
+ G +
Sbjct: 177 NAVAPGGTEAP 187
|
DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256 |
| >gnl|CDD|187621 cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), classical (c) SDR | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 5e-19
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 3/189 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TGS+ GIG + V GA+V ++ + A +I LD
Sbjct: 1 LDGKTALITGSARGIGRAFAQAYVREGARVAIADINLEAARATAAEIGPAACAI---SLD 57
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + + + V ++ G IDILVNNA + + E ++ + +N+ G L +
Sbjct: 58 VTDQASIDRCVAALVDRWGSIDILVNNAALFDLAPIVDITRESYDRLFAINVSGTLFMMQ 117
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ +M+ R G I+N++S AG R A + VY TK + ++ + + I V
Sbjct: 118 AVARAMIAQGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLIRHGINVNA 177
Query: 894 IQAGDVKTE 902
I G V E
Sbjct: 178 IAPGVVDGE 186
|
This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 254 |
| >gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 5e-19
Identities = 47/157 (29%), Positives = 65/157 (41%), Gaps = 1/157 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA KV VTG++ GIG+ K L GA VV + E L ++ V D
Sbjct: 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGV-ACD 478
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT E V+ E G +DI+V+NAG+ +E+ E+W +VN G
Sbjct: 479 VTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAR 538
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870
+ M G I+ I+S V P Y K
Sbjct: 539 EAVRIMKAQGLGGSIVFIASKNAVNPGPNFGAYGAAK 575
|
Length = 681 |
| >gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 5e-19
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 5/177 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
A KV +TG++SG G + LG K+V + D L+ L+ ++ + D
Sbjct: 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTD 63
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ V+ + L G + +L NNAGV L+ + L +W ++ VN+ GV+H +
Sbjct: 64 VSDAAQVEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVR 123
Query: 834 NILPSMLHSRRP-----GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
P ML + GHI+N +S AG+ + +Y +K+ + ++ L Q++S
Sbjct: 124 AFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPAMGIYNVSKHAVVSLTETLYQDLS 180
|
Length = 287 |
| >gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 7e-19
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 1/187 (0%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
++V VTG++SGIG + + L G +V AR + L L+ A + DV
Sbjct: 3 SEVALVTGATSGIGLAIARRLGKEGLRVFVCARGEEGLATTVKELREAGVEADGRTCDVR 62
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+++ +V +A G ID+LVNNAG + E W ++ N+ GV +
Sbjct: 63 SVPEIEALVAAAVARYGPIDVLVNNAGRSGGGATAELADELWLDVVETNLTGVFRVTKEV 122
Query: 836 LPSMLHSRRP-GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
L + R G I+NI+S G + A Y+ +K+ + G + AL E++ I V +
Sbjct: 123 LKAGGMLERGTGRIINIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAV 182
Query: 895 QAGDVKT 901
G V+T
Sbjct: 183 CPGFVET 189
|
Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258 |
| >gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 7e-19
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 22/221 (9%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVK--KLD 773
V VTG +SG+G V+ L+ GAKVV + E A + +D
Sbjct: 2 GLVAVVTGGASGLGLATVERLLAQGAKVVILDLPNSPGE------TVAKLGDNCRFVPVD 55
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY------FTLMEKYKLEEWNAMINVNIKG 827
VT E DVK + A+ G +DI+VN AG+ + + LE + +INVN+ G
Sbjct: 56 VTSEKDVKAALALAKAKFGRLDIVVNCAGIAVAAKTYNKKGQQPHSLELFQRVINVNLIG 115
Query: 828 VLHCIGNILPSM-----LHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQ 882
+ I +M G I+N +S A G A Y+ +K I G++ + +
Sbjct: 116 TFNVIRLAAGAMGKNEPDQGGERGVIINTASVAAFEGQIGQAAYSASKGGIVGMTLPIAR 175
Query: 883 EVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+++ + I+V I G T LL+ ++ + ++K VP
Sbjct: 176 DLAPQGIRVVTIAPGLFDTPLLAGLPEK---VRDFLAKQVP 213
|
HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252 |
| >gnl|CDD|187662 cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 9e-19
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 6/186 (3%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
KV VTG GIG+Q+ D + G KVV ID + P V DV
Sbjct: 1 GKVAIVTGGGHGIGKQICLDFLEAGDKVVFA--DIDEERGADFAEAEGPNLFFVH-GDVA 57
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
E VK VV +L +LG ID+LVNNA ++ LEEW+ +++VN+ G
Sbjct: 58 DETLVKFVVYAMLEKLGRIDVLVNNAARGSKGILSSLLLEEWDRILSVNLTGPYELSRYC 117
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
++ ++ G I+NI+S + Y +K + ++ AL + +I+V CI
Sbjct: 118 RDELIKNK--GRIINIASTRAFQSEPDSEAYAASKGGLVALTHALAMSLG-PDIRVNCIS 174
Query: 896 AGDVKT 901
G + T
Sbjct: 175 PGWINT 180
|
This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242 |
| >gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 41/208 (19%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
LA K VTG + GIG V L+ GA+VV AR + + P +
Sbjct: 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTAR---------SRPDDLPEGVEFVA 55
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVM------YFTLMEKYKLEEWNAMINVNI 825
D+T V R VL LG +DILV+ G + L + EEW +N+N+
Sbjct: 56 ADLTTAEGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTD----EEWQDELNLNL 111
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-----------AGLAVYTGTKYFIE 874
+ +LP M+ +R G I++++S P A L+ Y
Sbjct: 112 LAAVRLDRALLPGMI-ARGSGVIIHVTSIQRRLPLPESTTAYAAAKAALSTY-------- 162
Query: 875 GISGALRQEVSDRNIKVTCIQAGDVKTE 902
S +L +EV+ + ++V + G ++TE
Sbjct: 163 --SKSLSKEVAPKGVRVNTVSPGWIETE 188
|
Length = 260 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 1e-18
Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 5 NLSDYD-AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIV 63
N + A +H + QA++ P++ A+V + +++ +L+ + + LI G
Sbjct: 503 NAPATEYAPDCVHQLIEAQARQHPERPALV-FGEQVLSYAELNRQANRLAHVLIAAGVGP 561
Query: 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123
VG+ +ER +E + +A+ KAGG Y+PL+ YP L +LDD+ +++T+ +
Sbjct: 562 DVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLA 621
Query: 124 RLER-TSVPKVKLEND 138
+L + + L+
Sbjct: 622 QLPVPAGLRSLCLDEP 637
|
Length = 3956 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 2e-18
Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 17/240 (7%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
+ +V+ +TG + GIG + G +++ + R + + L +L + + D+
Sbjct: 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG---DEHLSVQADI 324
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
T E V+ ++ A G +D+LVNNAG+ F + E++ + +VN+ G C
Sbjct: 325 TDEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACAR 384
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
M + G I+N+ S A + Y +K + +S +L E + I+V
Sbjct: 385 AAARLM---SQGGVIVNLGSIASLLALPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNT 441
Query: 894 IQAGDVKT---ELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIFALLQPSHSAVN 947
+ G ++T L S D I + +P+ +E++++I F L P+ S VN
Sbjct: 442 VAPGYIETPAVLALKASGRADFD---SIRRRIPLGRLGDPEEVAEAIAF-LASPAASYVN 497
|
Length = 520 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-18
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 41 TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100
T+++LDE + + L G G V +L+ EW ++ +A+ KAG Y+PL+ S P
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 101 ALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKFHNHVPIAEEY 160
L +L+D++ ++IT E + +L + + L + E + +A
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGAS 120
Query: 161 RKNLVQNFESLHLS-ILKSSG 180
+ + L+ I+ +SG
Sbjct: 121 AEPPAPPVDPDDLAYIIYTSG 141
|
Length = 412 |
| >gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 4e-18
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 11/183 (6%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
K I +TG+ SG G ++ L G V+A + ++ L+ ++ V+KLD+T
Sbjct: 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD 62
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
D + A +D+L+NNAG+ + +E + N+ G L +
Sbjct: 63 AIDRAQ------AAEWDVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFV 116
Query: 837 PSMLHSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
M+ +R G ++ SS AG PF G Y +K+ +E I+ A+ E+ I+V +
Sbjct: 117 RKMV-ARGKGKVVFTSSMAGLITGPFTG--AYCASKHALEAIAEAMHAELKPFGIQVATV 173
Query: 895 QAG 897
G
Sbjct: 174 NPG 176
|
Length = 257 |
| >gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 5e-18
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 26/204 (12%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV +TG +G + K+L GAKV + R ++ E + ++ A G + K D
Sbjct: 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKAD 67
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAG---VMYFTLMEKYKL------------EEWN 818
V + +++ +++L + G DIL+N AG T E ++L E +
Sbjct: 68 VLDKESLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFE 127
Query: 819 AMINVNIKGVLHCIGNILPSM-----LHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873
+ ++N+ +G +LP+ + R+ G+I+NISS P + Y+ K I
Sbjct: 128 FVFDLNL------LGTLLPTQVFAKDMVGRKGGNIINISSMNAFTPLTKVPAYSAAKAAI 181
Query: 874 EGISGALRQEVSDRNIKVTCIQAG 897
+ L + I+V I G
Sbjct: 182 SNFTQWLAVHFAKVGIRVNAIAPG 205
|
Length = 278 |
| >gnl|CDD|235910 PRK07024, PRK07024, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 7e-18
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
+F+TG+SSGIG+ L ++ GA + VARR D L+ L + V DV +
Sbjct: 5 VFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK-AARVSVYAADVRDAD 63
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYK-LEEWNAMINVNIKGVLHCIGNILP 837
+ + +A G D+++ NAG+ TL E+ + L + +++ N G++ +
Sbjct: 64 ALAAAAADFIAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIA 123
Query: 838 SMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGA------LRQEVSDRNIKV 891
M + R G ++ I+S AGVR G Y+ +K + A LR E+ ++V
Sbjct: 124 PM-RAARRGTLVGIASVAGVRGLPGAGAYSASK------AAAIKYLESLRVELRPAGVRV 176
Query: 892 TCIQAGDVKTELLSH 906
I G ++T + +H
Sbjct: 177 VTIAPGYIRTPMTAH 191
|
Length = 257 |
| >gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 7e-18
Identities = 59/200 (29%), Positives = 87/200 (43%), Gaps = 15/200 (7%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
L KV +TG+SSGIG K GAKVV ARR L+ L ++ G +
Sbjct: 2 MRLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALA 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVM----YFTLMEKYKLEEWNAMINVNIKG 827
DV E K +V + G +DI NNAG + M LE W + N+
Sbjct: 62 GDVRDEAYAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMS---LEGWRETLATNLTS 118
Query: 828 VLHCIGNILPSMLHSRRPGHILNISS----NAGVRPFAGLAVYTGTKYFIEGISGALRQE 883
+ +P+ML +R G ++ S+ AG F G+A Y +K + G++ L E
Sbjct: 119 AFLGAKHQIPAML-ARGGGSLIFTSTFVGHTAG---FPGMAAYAASKAGLIGLTQVLAAE 174
Query: 884 VSDRNIKVTCIQAGDVKTEL 903
+ I+V + G T +
Sbjct: 175 YGAQGIRVNALLPGGTDTPM 194
|
Length = 254 |
| >gnl|CDD|236116 PRK07856, PRK07856, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 8e-18
Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 12/211 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +V+ VTG + GIG + + + GA VV RR ++ P D
Sbjct: 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAP------ETVDGRPAEFH--AAD 55
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V + V +V ++ G +D+LVNNAG + L + ++ +N+ L
Sbjct: 56 VRDPDQVAALVDAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQ 115
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
M G I+NI S +G RP G A Y K + ++ +L E + + ++V
Sbjct: 116 AANAVMQQQPGGGSIVNIGSVSGRRPSPGTAAYGAAKAGLLNLTRSLAVEWAPK-VRVNA 174
Query: 894 IQAGDVKTELL-SHSTDRDVVDKYDISKAVP 923
+ G V+TE H D + + ++ VP
Sbjct: 175 VVVGLVRTEQSELHYGDAEGIAA--VAATVP 203
|
Length = 252 |
| >gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 7/202 (3%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTS--LQNAPGSIIVKKL 772
+V VT S SGIG+ L G + + D +T+ +++ +++L
Sbjct: 1 MAQVAIVTASDSGIGKACALLLAQQGFDI-GITWHSDEEGAKETAEEVRSHGVRAEIRQL 59
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D++ + + + +++ LG ID+LVNNAG M +EW + V++ G C
Sbjct: 60 DLSDLPEGAQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCS 119
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
M+ + G I+NI+S P G + YT K+ + G++ A+ E+ + I V
Sbjct: 120 QIAARHMVKQGQGGRIINITSVHEHTPLPGASAYTAAKHALGGLTKAMALELVEHGILVN 179
Query: 893 CIQAGDVKTELLSHSTDRDVVD 914
+ G + T + D D
Sbjct: 180 AVAPGAIATPM----NGMDDSD 197
|
Length = 256 |
| >gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKK 771
L +V VTG SSGIG V+ L+ GA V R +RL + + L+ ++ +
Sbjct: 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAAR 65
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV E DV V A G +D+LVNNAG + + W + + V++
Sbjct: 66 CDVLDEADVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINP 125
Query: 832 IGNILPSMLHSRRPGHILNISS 853
LP +L + I+ ++S
Sbjct: 126 TRAFLP-LLRASAAASIVCVNS 146
|
Length = 265 |
| >gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-17
Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 18/236 (7%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
KV+ +TG+S GIG G A + R D E + +++ G + D
Sbjct: 1 MRKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAAD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNA-----MINVNIKGV 828
V E DV ++ V ELG +D LVNNAG+ L + +LE+ +A + N+ G
Sbjct: 61 VADEADVLRLFEAVDRELGRLDALVNNAGI----LEAQMRLEQMDAARLTRIFATNVVGS 116
Query: 829 LHCIGNILPSM--LHSRRPGHILNISSNAGVRPFAGLAV-YTGTKYFIEGISGALRQEVS 885
C + M H R G I+N+SS A G + Y +K I+ ++ L +EV+
Sbjct: 117 FLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPGEYIDYAASKGAIDTMTIGLAKEVA 176
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIFAL 938
I+V ++ G + TE+ + + VD+ + +P+ T +E++++I++ L
Sbjct: 177 AEGIRVNAVRPGVIYTEIHASGGEPGRVDR--VKAGIPMGRGGTAEEVARAILWLL 230
|
Length = 248 |
| >gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-17
Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 1/191 (0%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+LA K I +TGS+ GIG L L GA+++ +R E L+
Sbjct: 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPF 65
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+VT + +V+ + + ++G ID+L+NNAG+ ++ +EWN +I VN V
Sbjct: 66 NVTHKQEVEAAIEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVS 125
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ M+ R+ G I+NI S + Y +K ++ ++ + E++ NI+V
Sbjct: 126 QAVARYMV-KRQAGKIINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVN 184
Query: 893 CIQAGDVKTEL 903
I G KTE+
Sbjct: 185 GIAPGYFKTEM 195
|
Length = 254 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 2e-17
Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+ PD +AV DG +T+ +LD + + +LI+ G G V + +ER ++ +
Sbjct: 2 AQTHPDAVAVDFWDGS-LTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAIL 60
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117
A+ KAG Y+P++ S P L+ +++D+ ++V+T
Sbjct: 61 AVLKAGAAYVPIDPSAPVERLQFIIEDSGATVVLT 95
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKK 771
LA K + +TG+S GIG + G + VAR D LE L L+ A G + V
Sbjct: 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHA 63
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
LD++ + ++ AE G IDILVNNAG + ++ W A + + G +
Sbjct: 64 LDLSSPEARE----QLAAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDL 119
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAG-LAVYTGTKYFIEGISGALRQEVSDRNIK 890
P M +R G I+N+ AG P A + G + + AL + D ++
Sbjct: 120 TRLAYPRM-KARGSGVIVNVIGAAGENPDADYICGSAGNAALM-AFTRALGGKSLDDGVR 177
Query: 891 VTCIQAGDVKTE 902
V + G V T+
Sbjct: 178 VVGVNPGPVATD 189
|
Length = 259 |
| >gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
KV VTG +SGIG + K L GA VV + E + + Q P ++ V+ DVT
Sbjct: 2 KVALVTGGASGIGLAIAKRLAAEGAAVVVADIDPEIAEKVAEAAQGGPRALGVQ-CDVTS 60
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
E V+ + + E G +DI+V+NAG+ + + + LE+WN +++N+ G
Sbjct: 61 EAQVQSAFEQAVLEFGGLDIVVSNAGIATSSPIAETSLEDWNRSMDINLTGHFLVSREAF 120
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870
M G+I+ +S V P A Y+ K
Sbjct: 121 RIMKSQGIGGNIVFNASKNAVAPGPNAAAYSAAK 154
|
This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-17
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 3/179 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV+ V+G G+G L GA VV AR +RL+ + + + + D
Sbjct: 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+T E+ +V L G +D LVNNA + + W A+I +N+ G L
Sbjct: 63 ITDEDQCANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLT 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
P++ S G I+ I+S Y K + S +L E+ + I+V
Sbjct: 123 QAFTPALAESG--GSIVMINSMVLRHSQPKYGAYKMAKGALLAASQSLATELGPQGIRV 179
|
Length = 258 |
| >gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 2e-17
Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 15/239 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L V+ +TG+SSGIG+ + GA++V AR + L+ + + ++V D
Sbjct: 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTD 64
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + VK + + + G ID+ VNN GV E+ +E +I N+ G +
Sbjct: 65 VTDADQVKALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAH 124
Query: 834 NILPSMLHSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSD-RNIK 890
LP G +N+ S G +P+A A Y+ +K+ + G S ALR E++D +I
Sbjct: 125 AALPIFKKQGH-GIFINMISLGGFAAQPYA--AAYSASKFGLRGFSEALRGELADHPDIH 181
Query: 891 VTCIQAGDVKTELLSHS---TDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAV 946
V + + T H T R ++ PV + ++++++ +P +
Sbjct: 182 VCDVYPAFMDTPGFRHGANYTGR------RLTPPPPVYDPRRVAKAVVRLADRPRATTT 234
|
Length = 330 |
| >gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 3e-17
Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 16/198 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L NKV +TG+S+GIG+ L GA V+AV + + +++ G +D
Sbjct: 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
++ E VK E+ + G +D+L NNAGV + +Y ++ ++ ++ V+++G
Sbjct: 63 ISDEQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMT 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAV------YTGTKYFIEGISGALRQEVSD 886
+LP M+ + G I+N SS F+G A Y K + + ++ E
Sbjct: 123 KMLLPLMM--EQGGSIINTSS------FSGQAADLYRSGYNAAKGAVINFTKSIAIEYGR 174
Query: 887 RNIKVTCIQAGDVKTELL 904
I+ I G ++T L+
Sbjct: 175 DGIRANAIAPGTIETPLV 192
|
Length = 272 |
| >gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 2/208 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K+ VTG+S GIGE + K L GA V+ +R++D + + ++ A G
Sbjct: 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACH 65
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+ + + + G +DILVNNA YF + L + ++VNI+G
Sbjct: 66 IGEMEQIDALFAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMS 125
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
M G I+N++S GV P +Y+ TK + ++ A +E + I+V
Sbjct: 126 VEAGKLMKEQGG-GSIVNVASVNGVSPGDFQGIYSITKAAVISMTKAFAKECAPFGIRVN 184
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISK 920
+ G T+ S D + K ++
Sbjct: 185 ALLPGLTDTKFASALFKNDAILKQALAH 212
|
Length = 252 |
| >gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 11/192 (5%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
+ +TG+S GIG +LV+ L+ G V+A R L L + + + +LDVT
Sbjct: 1 VLITGASRGIGLELVRQLLARGNNTVIATCRDPSAATELAA-LGASHSRLHILELDVT-- 57
Query: 778 NDVKKVVREVLAELG--HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
+++ + V LG +D+L+NNAG+++ + + E+ + VN+ G L
Sbjct: 58 DEIAESAEAVAERLGDAGLDVLINNAGILHSYGPASEVDSEDLLEVFQVNVLGPLLLTQA 117
Query: 835 ILPSMLHSRRPGHILNISSNAG---VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
LP +L R I+NISS G G Y +K + ++ +L E+ I V
Sbjct: 118 FLPLLLKGARA-KIINISSRVGSIGDNTSGGWYSYRASKAALNMLTKSLAVELKRDGITV 176
Query: 892 TCIQAGDVKTEL 903
+ G V+T++
Sbjct: 177 VSLHPGWVRTDM 188
|
Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 4e-17
Identities = 61/259 (23%), Positives = 98/259 (37%), Gaps = 73/259 (28%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A + PD+ A+V G ++T+ +L E D + L+ G G V V + + + +
Sbjct: 1 AAKHPDRPALVV-GGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAIL 59
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE---YMDRLERTS----VPK--- 132
A KAG Y+PL+ S P + +L+ A P+ ++ + Y + TS PK
Sbjct: 60 ACLKAGAAYVPLDPSQPAERIAKILEAAGPAALVADPDDLAY---ILFTSGSTGKPKGVQ 116
Query: 133 VKLEN--DFLSKMIS-----ENEKFHNH----------------------VPIAEEYRKN 163
+ N FL M+ E + F N I +E +
Sbjct: 117 ISHANLASFLDWMVEDFDLTEGDVFSNQAPFSFDLSVFDLFPALASGATLYVIPKEQIAD 176
Query: 164 LVQNFESLH-------------LSILKSSGKLNKEELPKLDSIAQIELDESMFQSQ---K 207
+ FE L S+L S +LN E LP L + +F + K
Sbjct: 177 PLALFEFLKEHGLTVWVSVPSFASLLLLSRELNPESLPSLRT--------FLFCGEVLPK 228
Query: 208 NIAKIW------CKILNLY 220
+AK +I+NLY
Sbjct: 229 KLAKALRRRFPNARIINLY 247
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 5e-17
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 1/140 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K+ +TG+S GIG + K GA +V + ++ + + D
Sbjct: 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCD 67
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT E+ V+ +V ++ E+G IDILVNNAG++ M + E++ +I++++
Sbjct: 68 VTDEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSK 127
Query: 834 NILPSMLHSRRPGHILNISS 853
++PSM+ + G I+NI S
Sbjct: 128 AVIPSMI-KKGHGKIINICS 146
|
Length = 265 |
| >gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 6e-17
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 14/194 (7%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
V VTG ++GIG+ + L GA VV + + E + ++Q A G I + +VT E
Sbjct: 1 VAIVTGGAAGIGKAIAGTLAKAGASVVIADLKSEGAEAVAAAIQQAGGQAIGLECNVTSE 60
Query: 778 NDVKKVVREVLAELGHIDILVNNAG-------VMYFTLMEKYKLEEWNAMINVNIKGVLH 830
D++ VV+ +++ G I ILVNNAG M T E++ +N+
Sbjct: 61 QDLEAVVKATVSQFGGITILVNNAGGGGPKPFDMPMT------EEDFEWAFKLNLFSAFR 114
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
P M + G ILNISS + +A Y +K + ++ L ++ + I+
Sbjct: 115 LSQLCAPHMQKAGG-GAILNISSMSSENKNVRIAAYGSSKAAVNHMTRNLAFDLGPKGIR 173
Query: 891 VTCIQAGDVKTELL 904
V + G VKT+ L
Sbjct: 174 VNAVAPGAVKTDAL 187
|
This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 8e-17
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 3/195 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
L + +TG+S GIG + ++ + LGA V+ VAR D L + L V L
Sbjct: 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGL 65
Query: 773 --DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
DV+ + D + ++ V + ILVNNAG Y +EW + N+
Sbjct: 66 AADVSDDEDRRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFE 125
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ +L I+NI S +G+ A Y TK + ++ L E ++ I+
Sbjct: 126 -LSRYAHPLLKQHASSAIVNIGSVSGLTHVRSGAPYGMTKAALLQMTRNLAVEWAEDGIR 184
Query: 891 VTCIQAGDVKTELLS 905
V + ++T L S
Sbjct: 185 VNAVAPWYIRTPLTS 199
|
Length = 257 |
| >gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 61/237 (25%), Positives = 98/237 (41%), Gaps = 12/237 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKL 772
L+ K+ VTG+S GIG + L GA V R I +L ++ G I +
Sbjct: 1 LSGKIALVTGASRGIGRGIALQLGEAGATVYITGRTILPQLPGTAEEIEARGGKCIPVRC 60
Query: 773 DVTIENDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKY-------KLEEWNAMINVN 824
D + +++V+ + V E G +DILVNNA ++ W+ + NV
Sbjct: 61 DHSDDDEVEALFERVAREQQGRLDILVNNAYAAVQLILVGVAKPFWEEPPTIWDDINNVG 120
Query: 825 IKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV 884
++ C P M+ + + G I+ ISS G+ +A Y K I+ ++ + E+
Sbjct: 121 LRAHYACSVYAAPLMVKAGK-GLIVIISSTGGLEYLFNVA-YGVGKAAIDRMAADMAHEL 178
Query: 885 SDRNIKVTCIQAGDVKTEL-LSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQ 940
+ V + G V+TEL L D + A T E S + AL
Sbjct: 179 KPHGVAVVSLWPGFVRTELVLEMPEDDEGSWHAKERDAFLNGETTEYSGRCVVALAA 235
|
This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 265 |
| >gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTS-------LQNAPG 765
+L+ K +F+TG+S GIG + GA +V A+ + L + ++ A G
Sbjct: 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG 62
Query: 766 SIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNI 825
+ DV E+ V V + + G IDI VNNA + T E ++ ++ M +N+
Sbjct: 63 QALPLVGDVRDEDQVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINV 122
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISS--NAGVRPFAGLAVYTGTKYFIEGISGALRQE 883
+G LP + S P HIL +S N + FA YT KY + + L +E
Sbjct: 123 RGTFLVSQACLPHLKKSENP-HILTLSPPLNLDPKWFAPHTAYTMAKYGMSLCTLGLAEE 181
Query: 884 VSDRNIKVTC 893
D I V
Sbjct: 182 FRDDGIAVNA 191
|
Length = 273 |
| >gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-16
Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 4/195 (2%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ--NAPGSIIVKKLD 773
+KV+ +TG SG+G L GAK+ V + LE K +L +++ K D
Sbjct: 3 DKVVLITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLEIAPDAEVLLIKAD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCI 832
V+ E V+ V + + G ID NNAG+ L E + +E++ ++++N++GV + +
Sbjct: 63 VSDEAQVEAYVDATVEQFGRIDGFFNNAGIEGKQNLTEDFGADEFDKVVSINLRGVFYGL 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+L M + G I+N +S G+R + Y K+ + G++ E I++
Sbjct: 123 EKVLKVM-REQGSGMIVNTASVGGIRGVGNQSGYAAAKHGVVGLTRNSAVEYGQYGIRIN 181
Query: 893 CIQAGDVKTELLSHS 907
I G + T ++ S
Sbjct: 182 AIAPGAILTPMVEGS 196
|
Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 7/161 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAK-VVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
L KV VTG + G+G + + GA +V R ++ E L+ + +
Sbjct: 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQA 63
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHC 831
D++ D ++VV G +D LVN AG+ T+++ E ++ VN++
Sbjct: 64 DLSDVEDCRRVVAAADEAFGRLDALVNAAGLTDRGTILDT-SPELFDRHFAVNVRAPFFL 122
Query: 832 IGNILPSMLHSRRPGHILNISSNA--GVRPFAGLAVYTGTK 870
+ + M + G I+NI S + G +PF LA Y +K
Sbjct: 123 MQEAIKLMRRRKAEGTIVNIGSMSAHGGQPF--LAAYCASK 161
|
Length = 260 |
| >gnl|CDD|187611 cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 13/188 (6%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTS---------LQNAPGS 766
+V+ VTG+ G+G GAKVV DR + K+S ++ A G
Sbjct: 5 GRVVLVTGAGGGLGRAYALAFAERGAKVVVNDLGGDRKGSGKSSSAADKVVDEIKAAGGK 64
Query: 767 IIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIK 826
+ V D +K+V+ + G +DILVNNAG++ K E+W+ ++ V++K
Sbjct: 65 AVANYDSVE---DGEKIVKTAIDAFGRVDILVNNAGILRDRSFAKMSEEDWDLVMRVHLK 121
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
G P M ++ G I+N SS AG+ G A Y+ K + G+S L E +
Sbjct: 122 GSFKVTRAAWPYMR-KQKFGRIINTSSAAGLYGNFGQANYSAAKLGLLGLSNTLAIEGAK 180
Query: 887 RNIKVTCI 894
NI I
Sbjct: 181 YNITCNTI 188
|
Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 250 |
| >gnl|CDD|187663 cd09762, HSDL2_SDR_c, human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 3e-16
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLK-------TSLQNAPGS 766
LA K +F+TG+S GIG+ + GA VV A+ + L ++ A G
Sbjct: 1 LAGKTLFITGASRGIGKAIALKAARDGANVVIAAKTAEPHPKLPGTIYTAAEEIEAAGGK 60
Query: 767 IIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIK 826
+ +D+ E+ V+ V + + + G IDILVNNA + T ++ ++ M+ VN +
Sbjct: 61 ALPCIVDIRDEDQVRAAVEKAVEKFGGIDILVNNASAISLTGTLDTPMKRYDLMMGVNTR 120
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--FAGLAVYTGTKY 871
G C LP + S+ P HILN+S + P F YT KY
Sbjct: 121 GTYLCSKACLPYLKKSKNP-HILNLSPPLNLNPKWFKNHTAYTMAKY 166
|
This subgroup includes human HSDL2 and related protens. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (205), Expect = 3e-16
Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGST 66
+ +H +F QA TPD +A+V G+ +T+ +LD + + LI+ G G T
Sbjct: 221 APIPLRLTIHLLFEEQAATTPDAVALV-RGGQQLTYAELDARANRLARLLISLGVGPGET 279
Query: 67 VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121
V +L +R LE ++ +A+ KAG Y+PL+ YP L +L+D++P++++T+
Sbjct: 280 VAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHL 334
|
Length = 642 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-16
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 41 TFKQLDEWTDIVGTYLINQGCI-VGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99
T+++LDE + + +L G + G V VL+ER E ++ +A+ KAG Y+PL+ +YP
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 100 PALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFL 140
L +L+DA +++T RL +P + L+ L
Sbjct: 61 AERLAFILEDAGARLLLTDSALASRLAGLVLPVILLDPLEL 101
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|183714 PRK12742, PRK12742, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 3e-16
Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 20/195 (10%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-AVARRIDRLENLKTSLQNAPGSIIVKKL 772
K + V G S GIG +V+ VT GA V A D E L G+ V+
Sbjct: 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQE----TGATAVQ-T 58
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D D V+ +V+ + G +DILV NAG+ F + ++ + + +NI H
Sbjct: 59 DSA---DRDAVI-DVVRKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHA- 113
Query: 833 GNILPSMLHSRR---PGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
S+ +R+ G I+ I S G R P AG+A Y +K ++G++ L ++ R
Sbjct: 114 -----SVEAARQMPEGGRIIIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRG 168
Query: 889 IKVTCIQAGDVKTEL 903
I + +Q G + T+
Sbjct: 169 ITINVVQPGPIDTDA 183
|
Length = 237 |
| >gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 3e-16
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 7/193 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLE----NLKTSLQNAPGSIIV 769
L +++I VTG+S GIG + GA V+ + R ++L ++ P I+
Sbjct: 2 LNDRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRQVADHINEEGGRQPQWFIL 61
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGV 828
L T EN +++ + + +D +++NAG++ + + + W + VN+
Sbjct: 62 DLLTCTSEN-CQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSEQNPQVWQDVXQVNVNAT 120
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+LP +L S G ++ SS+ G + A Y +K+ EG+ L E RN
Sbjct: 121 FMLTQALLPLLLKS-DAGSLVFTSSSVGRQGRANWGAYAVSKFATEGLXQVLADEYQQRN 179
Query: 889 IKVTCIQAGDVKT 901
++V CI G +T
Sbjct: 180 LRVNCINPGGTRT 192
|
Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236 |
| >gnl|CDD|171531 PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 4e-16
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 12/194 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKL 772
L KV +TG ++G+G+ + L GA +V V + +L I
Sbjct: 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITA--- 62
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D+ + D+ +V + + +GHIDIL+NNAG++ + ++ ++W+ +IN+N K V
Sbjct: 63 DLIQQKDIDSIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLS 122
Query: 833 GNILPSMLHSRRPGHILNISS----NAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ + G I+NI+S G+R + YT +K + G++ AL E+S N
Sbjct: 123 QAVAKQFVKQGNGGKIINIASMLSFQGGIR----VPSYTASKSAVMGLTRALATELSQYN 178
Query: 889 IKVTCIQAGDVKTE 902
I V I G + T+
Sbjct: 179 INVNAIAPGYMATD 192
|
Length = 251 |
| >gnl|CDD|166421 PLN02780, PLN02780, ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 6e-16
Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 11/181 (6%)
Query: 721 VTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDV 780
VTG + GIG+ L G +V VAR D+L+++ S+Q+ +K + V D+
Sbjct: 58 VTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDI 117
Query: 781 KKVVREVLAELGHID--ILVNNAGVMYFTLMEKYKLEE--WNAMINVNIKGVLHCIGNIL 836
+ V+ + + +D +L+NN GV Y ++++E +I VN++G +L
Sbjct: 118 DEGVKRIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVL 177
Query: 837 PSMLHSRRPGHILNISSNAGV----RPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P ML R+ G I+NI S A + P AVY TK +I+ S L E I V
Sbjct: 178 PGML-KRKKGAIINIGSGAAIVIPSDPL--YAVYAATKAYIDQFSRCLYVEYKKSGIDVQ 234
Query: 893 C 893
C
Sbjct: 235 C 235
|
Length = 320 |
| >gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 7e-16
Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 20/233 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TG +SGIG + + + GA+V R LE + L S +V + D
Sbjct: 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGE---SALVIRAD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
K + + + G +D + NAGV F +E + ++ N N+KG I
Sbjct: 61 AGDVAAQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQ 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLA---VYTGTKYFIEGISGALRQEVSDRNIK 890
+LP L + +LN S NA + G+ VY +K + ++ L E+ R I+
Sbjct: 121 ALLP--LLANPASIVLNGSINAHI----GMPNSSVYAASKAALLSLAKTLSGELLPRGIR 174
Query: 891 VTCIQAGDVKTELLSH----STDRDVVDKYDISKAVPVL---TTKEISQSIIF 936
V + G V+T L D V I VP+ T +EI++++++
Sbjct: 175 VNAVSPGPVQTPLYGKLGLPEATLDAVAA-QIQALVPLGRFGTPEEIAKAVLY 226
|
Length = 249 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 7e-16
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 22 QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
QA +TPD A+ D +++++ E + L +G G +V V + R + T++
Sbjct: 467 QAAKTPDAPALAD-ARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLAL 525
Query: 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
AI +AG +LPL+T YP L+ +L+DA+PS++IT + + R
Sbjct: 526 HAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRF 569
|
Length = 1296 |
| >gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 12/191 (6%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
+ I +TG SSGIG + L + G +V A R+ + + L+ + +LD
Sbjct: 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA------EGLEAFQLDY 56
Query: 775 TIENDVKKVVREVLAELGH-IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ +V +VL G +D L NN +E E A N G
Sbjct: 57 AEPESIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTR 116
Query: 834 NILPSMLHSRRPGH--ILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
++P M R+ G I+ SS G+ P Y +K+ IEG+S LR E+ I V
Sbjct: 117 RVIPVM---RKQGQGRIVQCSSILGLVPMKYRGAYNASKFAIEGLSLTLRMELQGSGIHV 173
Query: 892 TCIQAGDVKTE 902
+ I+ G ++T
Sbjct: 174 SLIEPGPIETR 184
|
Length = 277 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 1e-15
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGST 66
+ Y A +H + +A+ TPD +AVV D +T+ +L+ + + LI +G
Sbjct: 4545 AGYPATRCVHQLVAERARMTPDAVAVV-FDEEKLTYAELNRRANRLAHALIARGVGPEVL 4603
Query: 67 VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
VG+ MER E + +A+ KAGG Y+PL+ YP L +++D+ ++++T+ + RL
Sbjct: 4604 VGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRL 4662
|
Length = 5163 |
| >gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 13/188 (6%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
A KV+ VTG++ GIG + GA+VV V R + + + L+ A G + D+
Sbjct: 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS-ELVHEVAAELRAAGGEALALTADL 65
Query: 775 TIENDVKKVVREVLAELGHIDILVNN-AGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ + + G ID+L+NN G ++ E+Y+ E+ A I ++ L C
Sbjct: 66 ETYAGAQAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCR 125
Query: 834 NILPSMLHSRRPGHILNISSNA--GVR--PFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+LP ML ++ G I+N+SS A G+ P Y+ K + ++ +L E ++ I
Sbjct: 126 AVLPHML-AQGGGAIVNVSSIATRGINRVP------YSAAKGGVNALTASLAFEYAEHGI 178
Query: 890 KVTCIQAG 897
+V + G
Sbjct: 179 RVNAVAPG 186
|
Length = 260 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 2e-15
Identities = 63/303 (20%), Positives = 109/303 (35%), Gaps = 48/303 (15%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+L+TG G++G HL+++ LL D+ L+
Sbjct: 2 RILVTGGAGFIGSHLVER--------------------LLAAGHDVRG-------LDRLR 34
Query: 381 DRLILVKSDLSLEMLGLKNQD-EYVSLSYEIDMIIHAAAFVNLILPY----NALYKSNVL 435
D L + S + +L L ++D D +IH AA ++ NV
Sbjct: 35 DGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVD 94
Query: 436 ATKNLIEFSFLNKIKSFHYVSTDSIY--PSTSENFQEDYTVADFDDFMTTTSGYGQSKIV 493
T NL+E + +K F + S+ S+ ED + YG SK+
Sbjct: 95 GTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRP------LNPYGVSKLA 148
Query: 494 SEYLVLNAGQM-GLPVSIVRCGNI---GGSLEFKNWNLVDLNLYILKAITRLGYAPDIDW 549
+E L+ ++ GLPV I+R N+ G + + + +LK + D
Sbjct: 149 AEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQ 208
Query: 550 YLEFTPVDFLTKSLVQLTTNVNNANKIYNFIN-TNPIHIKTLVS-VLNTYGYNIKTVPYE 607
+F VD + +L+ N ++N + T I ++ L V G + Y
Sbjct: 209 TRDFVYVDDVADALLLALE--NPDGGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYI 266
Query: 608 KWF 610
Sbjct: 267 PLG 269
|
Length = 314 |
| >gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-15
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 10/198 (5%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ----NAPGSII 768
L K VTG + GIG +V++L LGA+V AR L+ T + GS+
Sbjct: 3 NLEGKTALVTGGTKGIGYAIVEELAGLGAEVYTCARNQKELDECLTEWREKGFKVEGSVC 62
Query: 769 VKKLDVTIENDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKG 827
DV+ ++ ++++ V + G ++ILVNNAG + Y E+++ +++ N +
Sbjct: 63 ----DVSSRSERQELMDTVASHFGGKLNILVNNAGTNIRKEAKDYTEEDYSLIMSTNFEA 118
Query: 828 VLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
H + + +L + G+I+ ISS AGV A Y TK + ++ +L E +
Sbjct: 119 AYH-LSRLAHPLLKASGNGNIVFISSVAGVIAVPSGAPYGATKGALNQLTRSLACEWAKD 177
Query: 888 NIKVTCIQAGDVKTELLS 905
NI+V + + T L+
Sbjct: 178 NIRVNAVAPWVIATPLVE 195
|
This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251 |
| >gnl|CDD|135765 PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 10/196 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TG+ +GIG+++ T GA VV D ++ +Q G + D
Sbjct: 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCD 68
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAG---VMYFTL-MEKYKLEEWNAMINVNIKGVL 829
+T E ++ + L++LG +DILVNNAG F + M + +NV
Sbjct: 69 ITSEQELSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADF---RRAYELNVF--SFF 123
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
H + P M G IL I+S A + Y +K + + ++ ++NI
Sbjct: 124 HLSQLVAPEM-EKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNI 182
Query: 890 KVTCIQAGDVKTELLS 905
+V I G + T+ L
Sbjct: 183 RVNGIAPGAILTDALK 198
|
Length = 255 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-15
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD AV+D G +T+ +L + + L G G V V+M + E ++ + I
Sbjct: 1 PDATAVIDGAGT-LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILL 59
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN 137
AG Y+P++ P ++L A V+T E + V +
Sbjct: 60 AGAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQPEEAPDLLVVADDA 110
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 4e-15
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
Y +H + +QA TP+ +A+V + +T+ +L+ + + LI G V
Sbjct: 1569 GYPLARLVHQLIEDQAAATPEAVALV-FGEQELTYGELNRRANRLAHRLIALGVGPEVLV 1627
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
G+ +ER LE + +AI KAGG Y+PL+ YP L +++D+ +++T+ RL
Sbjct: 1628 GIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARL 1685
|
Length = 3956 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 4e-15
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Query: 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGS 65
Y +H QA R P+ IAVV + +++ +LD + + L +G
Sbjct: 1996 PEAYPRGPGVHQRIAEQAARAPEAIAVV-FGDQHLSYAELDSRANRLAHRLRARGVGPEV 2054
Query: 66 TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
V + ER E ++ +A+ KAGG Y+PL+ +YP L +L+D+ ++++T+ ++RL
Sbjct: 2055 RVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERL 2114
Query: 126 E-RTSVPKVKLEND 138
V ++ L+ D
Sbjct: 2115 PLPAGVARLPLDRD 2128
|
Length = 5163 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 5e-15
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 176 LKSSGKLNKEELPKLD-SIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGH 234
L +GKL+++ LP+ D S+ Q + ++ +A IW ++L L + D+NFFE+GGH
Sbjct: 5043 LTPNGKLDRKALPQPDASLLQQAYVAPRSELEQQVAAIWAEVLQLERVGLDDNFFELGGH 5102
Query: 235 SLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLEN-KSNETLKLDLIHEI 287
SL A S++ EL L L +++LF PT+ L S + K D + E+
Sbjct: 5103 SLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAAAGSGDDEKFDDLEEL 5156
|
Length = 5163 |
| >gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 5e-15
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA KV VTG ++ IG + + LV GA+V V D + SL D
Sbjct: 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---GERARFIATD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+T + +++ V V+A G +DILVN A Y +W A ++VN+
Sbjct: 61 ITDDAAIERAVATVVARFGRVDILVNLA-CTYLDDGLASSRADWLAALDVNLVSAAMLAQ 119
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQ 882
P + +R G I+N +S + G +Y +K A+RQ
Sbjct: 120 AAHPHL--ARGGGAIVNFTSISAKFAQTGRWLYPASK-------AAIRQ 159
|
Length = 261 |
| >gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 6e-15
Identities = 46/185 (24%), Positives = 86/185 (46%), Gaps = 20/185 (10%)
Query: 720 FVTGSSSGIGEQLVKDLVTLGAKVV-----------AVARRIDRLENLKTSLQNAPGSII 768
F+TG++ G+G + + + GAKV A A I+ + G
Sbjct: 3 FITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINA--------AHGEGVAF 54
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
DVT E + ++ + +G + +LVNNAGV F +E+ +L+EW ++ +N++ +
Sbjct: 55 AAVQDVTDEAQWQALLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESI 114
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ LP + S +P I+NISS A + Y +K + ++ ++ + + R
Sbjct: 115 FLGCKHALPYLRAS-QPASIVNISSVAAFKAEPDYTAYNASKAAVASLTKSIALDCARRG 173
Query: 889 IKVTC 893
+ V C
Sbjct: 174 LDVRC 178
|
Length = 251 |
| >gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10 | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 6e-15
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTS-LQNAPGSIIVKKLDVTI 776
V V G+ G+G + + G V ARR +LE L +++A GS D
Sbjct: 1 VAAVVGAGDGLGAAIARRFAAEGFSVALAARREAKLEALLVDIIRDAGGSAKAVPTDARD 60
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
E++V + + E+G +++LV NAG ++F ++E + + + G
Sbjct: 61 EDEVIALFDLIEEEIGPLEVLVYNAGANVWFPILETTP-RVFEKVWEMAAFGGFLAAREA 119
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
ML +R G I+ + A +R AG A + G K+ + ++ ++ +E+ + I V
Sbjct: 120 AKRML-ARGRGTIIFTGATASLRGRAGFAAFAGAKFALRALAQSMARELGPKGIHV 174
|
This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 238 |
| >gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 7e-15
Identities = 62/244 (25%), Positives = 109/244 (44%), Gaps = 11/244 (4%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+ VTG S GIG L G V V + + + + + A G V + D++
Sbjct: 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADIS 61
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGN 834
EN V + + + LVNNAG+++ +E E N +++ N+ G C
Sbjct: 62 DENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCRE 121
Query: 835 ILPSMLHSR--RPGHILNISSNAGVRPFAGLAV-YTGTKYFIEGISGALRQEVSDRNIKV 891
+ M G I+N+SS A G V Y +K I+ ++ L EV+ + I+V
Sbjct: 122 AVKRMALKHGGSGGAIVNVSSAASRLGAPGEYVDYAASKGAIDTLTTGLSLEVAAQGIRV 181
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIFALLQPSHSAVNS 948
C++ G + TE+ + + VD+ + +P+ +E++Q+I++ LL S V
Sbjct: 182 NCVRPGFIYTEMHASGGEPGRVDR--VKSNIPMQRGGQPEEVAQAIVW-LLSDKASYVTG 238
Query: 949 ILIE 952
I+
Sbjct: 239 SFID 242
|
Length = 247 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 7e-15
Identities = 46/177 (25%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Query: 411 DMIIHAAAFVNLILPYN---ALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN 467
D+++H AA V + ++ +++NV+ T NL+E + +K F Y S+ S+Y S
Sbjct: 32 DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSASVYGSPEGL 91
Query: 468 FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWN 526
+E+ T S YG SK+ +E+L+ + G GLPV I+R N+ G + +
Sbjct: 92 PEEEETP------PRPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANVYGPGQRPRLD 145
Query: 527 LVDLNLYILKAITR----LGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNF 579
V +N +I +A+ + + +F VD + ++++ N +YN
Sbjct: 146 GV-VNDFIRRALEGKPLTVFGGGNQ--TRDFIHVDDVVRAILHALENPLEGGGVYNI 199
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|236357 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 5/196 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA---PGSII 768
+ L +++I VTG+ GIG + GA V+ + R ++LE + ++ A +II
Sbjct: 8 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAII 67
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKG 827
L + +++ + + G +D +++NAG++ ME+ E W ++ VN+
Sbjct: 68 PLDLLTATPQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNA 127
Query: 828 VLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
+LP +L S ++ SS+ G + A Y +K+ EG+ L E
Sbjct: 128 TFMLTQALLPLLLKSPA-ASLVFTSSSVGRQGRANWGAYAVSKFATEGMMQVLADEYQGT 186
Query: 888 NIKVTCIQAGDVKTEL 903
N++V CI G +T +
Sbjct: 187 NLRVNCINPGGTRTAM 202
|
Length = 247 |
| >gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 1e-14
Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 17/234 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKL 772
++ + + VTG S G+G + + GA+VV + D E L I +
Sbjct: 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALA---DELGDRAIALQA 59
Query: 773 DVTIENDVKKVVREVLAELGH-IDILVNNAGVMY-FTLMEKYKL-----EEWNAMINVNI 825
DVT V+ + G I +VNNA + F + K E++ + ++
Sbjct: 60 DVTDREQVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSV 119
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
KG L+ I LP M + G I+NI +N P YT K + G++ L E+
Sbjct: 120 KGALNTIQAALPGMR-EQGFGRIINIGTNLFQNPVVPYHDYTTAKAALLGLTRNLAAELG 178
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIF 936
I V + G ++T S +T +V D I+ P V T +E + +++F
Sbjct: 179 PYGITVNMVSGGLLRTTDASAATPDEVFDL--IAATTPLRKVTTPQEFADAVLF 230
|
Length = 253 |
| >gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 2/185 (1%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL--QNAPGSIIVKKLD 773
N+V V G +G L L G +V ++ N+ + + G D
Sbjct: 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGAD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
T E V + R V G +D+LV NAG+ + ++L +++ + VN+ G C
Sbjct: 62 ATSEQSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAR 121
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
M+ G I+ I+S +G + Y+ K+ G++ +L ++++ I V
Sbjct: 122 EFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHS 181
Query: 894 IQAGD 898
+ G+
Sbjct: 182 LMLGN 186
|
Length = 259 |
| >gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 52/226 (23%), Positives = 87/226 (38%), Gaps = 19/226 (8%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
+ VTG++ GIG+ L + + G +V+A+ L +L +A + D+
Sbjct: 1 TKRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDA--RFVPVACDL 58
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
T + + AE G +D+LV NAG + W A +N++ C+
Sbjct: 59 TDAASLAAALANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEA 118
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
+L ML R G ++NI S G+ G Y+ K + + L E I+ +
Sbjct: 119 VLEGMLKRSR-GAVVNIGSVNGMAAL-GHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAV 176
Query: 895 QAGDVKTELLSHSTD---------------RDVVDKYDISKAVPVL 925
G VKT+ +D D++ AV L
Sbjct: 177 APGTVKTQAWEARVAANPQVFEELKKWYPLQDFATPDDVANAVLFL 222
|
Length = 257 |
| >gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-14
Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL--QNAPGSIIVK 770
TLA +V FVTG + GIG + + L GA VV ++ E + + Q G +
Sbjct: 411 TLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVAL 470
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
K+DVT E VK +V G +DI+VNNAG+ + E+ L+EW +++ G
Sbjct: 471 KMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFL 530
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870
M G+I+ I+S V + Y+ K
Sbjct: 531 VAREAFRQMREQGLGGNIVFIASKNAVYAGKNASAYSAAK 570
|
Length = 676 |
| >gnl|CDD|181605 PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 2e-14
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 20/198 (10%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-----ARRIDRLENLKTSLQNAPGSI 767
+L KV VTG +G+G+ + L G +V + I+++ L + +
Sbjct: 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADL 66
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKG 827
K+D + ++ +AE GHIDILVNNAG++ ++ ++W+ ++N+NIK
Sbjct: 67 R--KID-----GIPALLERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKS 119
Query: 828 VLHCIGNILPSMLHSRRPGHILNISS----NAGVRPFAGLAVYTGTKYFIEGISGALRQE 883
V + G I+NI+S G+R + YT +K + G++ + E
Sbjct: 120 VFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIR----VPSYTASKSGVMGVTRLMANE 175
Query: 884 VSDRNIKVTCIQAGDVKT 901
+ NI V I G + T
Sbjct: 176 WAKHNINVNAIAPGYMAT 193
|
Length = 253 |
| >gnl|CDD|130890 TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 2e-14
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 3/189 (1%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR--LENLKTSLQNAPGSIIVKKLDVTI 776
+ VTG+S GIG + L G ++ V R E++ +++Q G+ + + DV
Sbjct: 1 VLVTGASRGIGRAIANRLAADGFEI-CVHYHSGRSDAESVVSAIQAQGGNARLLQFDVAD 59
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+ ++ +AE G +V NAG+ E+W+ +I+ N+ G + I
Sbjct: 60 RVACRTLLEADIAEHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCT 119
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
M+ +R+ G I+ ++S +GV G Y+ K + G + AL E++ R I V CI
Sbjct: 120 MPMIRARQGGRIITLASVSGVMGNRGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAP 179
Query: 897 GDVKTELLS 905
G + TE+L+
Sbjct: 180 GLIDTEMLA 188
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 9/194 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA +V +TG SGIG + L GA VV D + + G + V D
Sbjct: 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVG----DIDPEAGKAAADEVGGLFV-PTD 59
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM--YFTLMEKYKLEEWNAMINVNIKGVLHC 831
VT E+ V + G +DI NNAG+ + L+ W + +VN+ V C
Sbjct: 60 VTDEDAVNALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLC 119
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV-YTGTKYFIEGISGALRQEVSDRNIK 890
LP M+ + G I+N +S V A + YT +K + +S L + + + I+
Sbjct: 120 CKAALPHMVRQGK-GSIINTASFVAVMGSATSQISYTASKGGVLAMSRELGVQFARQGIR 178
Query: 891 VTCIQAGDVKTELL 904
V + G V T LL
Sbjct: 179 VNALCPGPVNTPLL 192
|
Length = 255 |
| >gnl|CDD|236110 PRK07831, PRK07831, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 3/160 (1%)
Query: 714 LANKVIFVTGSS-SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
LA KV+ VT ++ +GIG + + GA+VV RL L G V+ +
Sbjct: 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAV 74
Query: 773 --DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
DVT E V ++ + LG +D+LVNNAG+ T + +EW+ +++V + G
Sbjct: 75 VCDVTSEAQVDALIDAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFR 134
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870
L M G I+N +S G R G A Y K
Sbjct: 135 ATRAALRYMRARGHGGVIVNNASVLGWRAQHGQAHYAAAK 174
|
Length = 262 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (190), Expect = 4e-14
Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVG 68
Y + +H +F Q +RTP+ A+ ++ + +L+ + + LI +G VG
Sbjct: 507 YPLQRGVHRLFEEQVERTPEAPALA-FGEETLDYAELNRRANRLAHALIERGVGPDVLVG 565
Query: 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
V MER +E ++ +AI KAGG Y+PL+ YP L +L+D+ +++++ +L
Sbjct: 566 VAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKL 622
|
Length = 5163 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 46/210 (21%), Positives = 76/210 (36%), Gaps = 43/210 (20%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
+L+TG TG++G HL+ + LLQ ++ + L
Sbjct: 1 ILVTGGTGFIGSHLV--------------------RRLLQEGYEV-------IVLGRRRR 33
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSL--SYEIDMIIHAAA----FVNLILPYNALYKSNVL 435
L + L + D L + D +IH AA + P ++NVL
Sbjct: 34 SESLNTGRIRFHEGDLTDPDALERLLAEVQPDAVIHLAAQSGVGASFEDP-ADFIRANVL 92
Query: 436 ATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDYTVADFDDFMTTTSGYGQSKIVS 494
T L+E + +K F + S+ +Y ++ ED + S Y +K+ +
Sbjct: 93 GTLRLLEAARRAGVKRFVFASSSEVYGDVADPPITEDTPLGP-------LSPYAAAKLAA 145
Query: 495 EYLVLNAG-QMGLPVSIVRCGNIGGSLEFK 523
E LV GL I+R N+ G
Sbjct: 146 ERLVEAYARAYGLRAVILRLFNVYGPGNPD 175
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-14
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 28 DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87
D+IA+VD GRS+T+ +LD + + L+ G + G V VL + E+ + Y+AI +A
Sbjct: 1 DRIALVD-GGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRA 59
Query: 88 GGGYLPLETSYPPALLESVLDDAKPSIVIT 117
GG +PL SYP A L +L D++PS+++
Sbjct: 60 GGVAVPLNPSYPAAELAYILSDSQPSLLVD 89
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 7e-14
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 25/209 (11%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLEN----LKTSLQNAPGSIIVKKL 772
K + +TG+++GIG++ ++L GA+V+ R + + E ++ N +IV+ L
Sbjct: 2 KTVIITGANTGIGKETARELARRGARVIMACRDMAKCEEAAAEIRRDTLN--HEVIVRHL 59
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAM-INVNIKGVLH- 830
D+ ++ E LAE +D+L+NNAGVM K E+ M VN G H
Sbjct: 60 DLASLKSIRAFAAEFLAEEDRLDVLINNAGVM---RCPYSKTEDGFEMQFGVNHLG--HF 114
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVR---PFAGL---------AVYTGTKYFIEGISG 878
+ N+L +L P I+N+SS A F L Y +K +
Sbjct: 115 LLTNLLLDLLKKSAPSRIVNVSSLAHKAGKINFDDLNSEKSYNTGFAYCQSKLANVLFTR 174
Query: 879 ALRQEVSDRNIKVTCIQAGDVKTELLSHS 907
L + + + V + G V+TEL H+
Sbjct: 175 ELARRLQGTGVTVNALHPGVVRTELGRHT 203
|
Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274 |
| >gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 8/186 (4%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
K + +TG SSGIG + +L G +V+A R+ D + + N+ G + LD+
Sbjct: 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM-----NSLGFTGIL-LDLDD 56
Query: 777 ENDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
V++ EV+A + L NNAG + + ++ + N G +
Sbjct: 57 PESVERAADEVIALTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLL 116
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
LP+ML G I+ SS G+ G Y +KY +E S ALR E+ IKV+ I+
Sbjct: 117 LPAMLPHGE-GRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIE 175
Query: 896 AGDVKT 901
G ++T
Sbjct: 176 PGPIRT 181
|
Length = 256 |
| >gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 10/228 (4%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR--IDRLENLKTSLQNAPGSIIVKKLDV 774
V VTG++ IG + + L G +VV R + LK L S ++ + D+
Sbjct: 1 AVALVTGAAKRIGRAIAEALAAEGYRVVVHYNRSEAEAQR-LKDELNALRNSAVLVQADL 59
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
+ +V G D+LVNNA Y T + + + W + +N+K I
Sbjct: 60 SDFAACADLVAAAFRAFGRCDVLVNNASAFYPTPLGQGSEDAWAELFGINLKAPYLLIQA 119
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
L R G I+NI RP G Y +K +EG++ + E++ NI+V I
Sbjct: 120 FAR-RLAGSRNGSIINIIDAMTDRPLTGYFAYCMSKAALEGLTRSAALELAP-NIRVNGI 177
Query: 895 QAGDV-KTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941
G + E + + + K + + +EI+ ++IF LL
Sbjct: 178 APGLILLPEDMDAEYRENALRKVPLKRRPSA---EEIADAVIF-LLDS 221
|
Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234 |
| >gnl|CDD|180300 PRK05875, PRK05875, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 23/224 (10%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL--QNAPGSIIVK 770
+ ++ VTG SGIG+ + LV GA V+ V R D+L + G++ +
Sbjct: 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYE 63
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAG----VMYFTLMEKYKLEEWNAMINVNIK 826
DVT E+ V + V A G + +V+ AG + T ++ + W +++N+
Sbjct: 64 PADVTDEDQVARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDS---DAWRRTVDLNVN 120
Query: 827 GVLHCIGNILPSMLHSRRP------GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGAL 880
G ++ + H+ R G + ISS A Y TK ++ +
Sbjct: 121 GTMYVLK-------HAARELVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMKLA 173
Query: 881 RQEVSDRNIKVTCIQAGDVKTELLSHSTDR-DVVDKYDISKAVP 923
E+ ++V I+ G ++T+L++ T+ ++ Y +P
Sbjct: 174 ADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRACTPLP 217
|
Length = 276 |
| >gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 4e-13
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 30/209 (14%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS--IIVKK 771
L K I +TG+ IG LVK ++ G V+A + L L SL S + + +
Sbjct: 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVE 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNA---GVMYFTLMEKYKLEEWNAMINVNIKGV 828
LD+T + +++ + + + G ID VN A Y L+++N N++
Sbjct: 62 LDITDQESLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNE--NLS---- 115
Query: 829 LHCIGNILPS-----MLHSRRPGHILNISSNAGV-RPFAGLAVYTGT-----------KY 871
LH + L S + G+++NISS GV P +Y GT K
Sbjct: 116 LHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAP--KFEIYEGTSMTSPVEYAAIKA 173
Query: 872 FIEGISGALRQEVSDRNIKVTCIQAGDVK 900
I ++ L + D NI+V C+ G +
Sbjct: 174 GIIHLTKYLAKYFKDSNIRVNCVSPGGIL 202
|
Length = 256 |
| >gnl|CDD|183718 PRK12746, PRK12746, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 6e-13
Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 12/246 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKKL 772
L KV VTG+S GIG + L GA V + R + +++ G + +
Sbjct: 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEA 63
Query: 773 DVTIENDVKKVVREVLAEL------GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIK 826
D+ + VKK+V ++ EL IDILVNNAG+ +E E ++ ++ VNIK
Sbjct: 64 DLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIK 123
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
I LP + R G ++NISS F G Y +K + ++ L + + +
Sbjct: 124 APFFLIQQTLPLL---RAEGRVINISSAEVRLGFTGSIAYGLSKGALNTMTLPLAKHLGE 180
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAV--PVLTTKEISQSIIFALLQPSHS 944
R I V I G KT++ + D + + + +V + ++I+ ++ F S
Sbjct: 181 RGITVNTIMPGYTKTDINAKLLDDPEIRNFATNSSVFGRIGQVEDIADAVAFLASSDSRW 240
Query: 945 AVNSIL 950
I+
Sbjct: 241 VTGQII 246
|
Length = 254 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-12
Identities = 28/108 (25%), Positives = 58/108 (53%)
Query: 176 LKSSGKLNKEELPKLDSIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGHS 235
L ++GKL+++ LP + AQ+ ++ IA + +L +D D +FF +GGHS
Sbjct: 950 LSANGKLDRKALPLPELKAQVPGRAPKTGTETIIAAAFSSLLGCDVVDADADFFALGGHS 1009
Query: 236 LTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNETLKLDL 283
L A ++++ + + ++ + TV ++A LL+ + +E+ +L
Sbjct: 1010 LLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAEEDESRRLGF 1057
|
Length = 1296 |
| >gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-12
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 37/164 (22%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV------------AVARRIDRLENLKTSLQ 761
LA KV VTG++ GIG + + L GA VV AVA R+ T+L
Sbjct: 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVG-----GTALA 262
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
LD+T + ++ + G +DI+V+NAG+ + W++++
Sbjct: 263 ----------LDITAPDAPARIAEHLAERHGGLDIVVHNAGITRDKTLANMDEARWDSVL 312
Query: 822 NVNIKGVLHCIGNILPSMLHS---RRPGHILNISSNAGVRPFAG 862
VN+ L I ++L + G I+ +SS +G+ AG
Sbjct: 313 AVNLLAPLR----ITEALLAAGALGDGGRIVGVSSISGI---AG 349
|
Length = 450 |
| >gnl|CDD|180399 PRK06101, PRK06101, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 42/230 (18%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+ +TG++SGIG+QL D G +V+A R L L +I DVT
Sbjct: 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVL----DELHTQSANIFTLAFDVT 56
Query: 776 IENDVKKVVREVLAELGHI-DILVNNA--------GVMYFTLMEKYKLEEWNAMINVNIK 826
K L++L I ++ + NA G + TLM + + NVN+
Sbjct: 57 DHPGTK----AALSQLPFIPELWIFNAGDCEYMDDGKVDATLMAR--------VFNVNVL 104
Query: 827 GVLHCIGNILPSMLHSRRPGH-ILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
GV +CI I P + GH ++ + S A Y +K + + L+ ++
Sbjct: 105 GVANCIEGIQPHL----SCGHRVVIVGSIASELALPRAEAYGASKAAVAYFARTLQLDLR 160
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP-VLTTKEISQSI 934
+ I+V + G V T L TD++ A+P ++T ++ SQ I
Sbjct: 161 PKGIEVVTVFPGFVATPL----TDKNTF-------AMPMIITVEQASQEI 199
|
Length = 240 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 2e-12
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
L + A+R PD+ A+ GR +T+ +LDE +D YL G G V +++ C
Sbjct: 1 LADLLERAARRFPDRPALTFF-GRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNC 59
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117
++ I+Y I KAG +P+ Y P LE L+D+ ++I
Sbjct: 60 PQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIV 102
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 32/248 (12%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +KV+ VTG +SGIG + L GA V R E + P + V+ +D
Sbjct: 5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQ-VD 63
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+T + + V + +A+ G ID LVNNAGV +E E + A + N ++H
Sbjct: 64 LTDDAQCRDAVEQTVAKFGRIDGLVNNAGVNDGVGLEA-GREAFVASLERN---LIHYY- 118
Query: 834 NILPSMLHSRRP------GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQ---EV 884
M H P G I+NISS + G + Y K R+ +
Sbjct: 119 ----VMAHYCLPHLKASRGAIVNISSKTALTGQGGTSGYAAAK---GAQLALTREWAVAL 171
Query: 885 SDRNIKVTCIQAGDVKTELLSH--STDRDVVDKYD-ISKAVPV----LTTKEISQSIIFA 937
+ ++V + +V T L + +T D K I+ +P+ T +EI+ + +F
Sbjct: 172 AKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKIPLGHRMTTAEEIADTAVF- 230
Query: 938 LLQP--SH 943
LL SH
Sbjct: 231 LLSERSSH 238
|
Length = 258 |
| >gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1 | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 53/217 (24%), Positives = 89/217 (41%), Gaps = 10/217 (4%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENLKTSLQNAPGSII 768
L K +TG SGIG + GA V D E K ++ +
Sbjct: 21 SGKLKGKKALITGGDSGIGRAVAIAFAREGADVAINYLPEEEDDAEETKKLIEEEGRKCL 80
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAG--VMYFTLMEKYKLEEWNAMINVNIK 826
+ D+ E+ + +V+EV+ E G +DILVNNA ++ E E+ NI
Sbjct: 81 LIPGDLGDESFCRDLVKEVVKEFGKLDILVNNAAYQHPQESI-EDITTEQLEKTFRTNIF 139
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
+ + LP H ++ I+N +S + L Y TK I + L ++++
Sbjct: 140 SMFYLTKAALP---HLKKGSSIINTTSVTAYKGSPHLLDYAATKGAIVAFTRGLSLQLAE 196
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+ I+V + G + T L+ S + V ++ VP
Sbjct: 197 KGIRVNAVAPGPIWTPLIPSSFPEEKVSEF--GSQVP 231
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 6e-12
Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 15/109 (13%)
Query: 172 HLSILKS-----SGKLNKEELPKLDSIAQIELDESMFQSQKN-----IAKIWCKILNLYT 221
HL +L S +GKL++ LP D EL+ +Q+ ++ +A+IW ++LN+
Sbjct: 2671 HLILLDSLPLTANGKLDRRALPAPD----PELNRQAYQAPRSELEQQLAQIWREVLNVER 2726
Query: 222 LDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAAL 270
+ +NFFE+GG S+ + +S+ +L ++ S +DLF H TVQ +AA+
Sbjct: 2727 VGLGDNFFELGGDSILSIQVVSRA-RQLGIHFSPRDLFQHQTVQTLAAV 2774
|
Length = 4334 |
| >gnl|CDD|183719 PRK12747, PRK12747, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 6e-12
Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 20/202 (9%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSII---- 768
L KV VTG+S GIG + K L GA V + R + E +Q+ GS
Sbjct: 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGA 61
Query: 769 -------VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
V+ L +++N+++ DIL+NNAG+ +E+ + ++ M+
Sbjct: 62 NLESLHGVEALYSSLDNELQNRTGST-----KFDILINNAGIGPGAFIEETTEQFFDRMV 116
Query: 822 NVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALR 881
+VN K I L + + R I+NISS A Y+ TK I ++ L
Sbjct: 117 SVNAKAPFFIIQQALSRLRDNSR---IINISSAATRISLPDFIAYSMTKGAINTMTFTLA 173
Query: 882 QEVSDRNIKVTCIQAGDVKTEL 903
+++ R I V I G +KT++
Sbjct: 174 KQLGARGITVNAILPGFIKTDM 195
|
Length = 252 |
| >gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR) | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 6e-12
Identities = 37/184 (20%), Positives = 63/184 (34%), Gaps = 47/184 (25%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
+ VTG S GIG + + L + G+ KV+ V+RR
Sbjct: 1 VLVTGGSGGIGGAIARWLASRGSPKVLVVSRR---------------------------- 32
Query: 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILP 837
D++V+NA ++ + I N+ G +
Sbjct: 33 -----------------DVVVHNAAILDDGRLIDLTGSRIERAIRANVVGTRRLLEAARE 75
Query: 838 SMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAG 897
M ++R G + ISS AG+ GL Y +K ++G++ E + T + G
Sbjct: 76 LM-KAKRLGRFILISSVAGLFGAPGLGGYAASKAALDGLAQQWASEGWGNGLPATAVACG 134
Query: 898 DVKT 901
Sbjct: 135 TWAG 138
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-12
Identities = 31/94 (32%), Positives = 55/94 (58%)
Query: 176 LKSSGKLNKEELPKLDSIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGHS 235
L +GK++++ LP D+ E + ++ +A IW +L + + +NFFE+GG S
Sbjct: 3577 LGPNGKVDRKALPDPDAKGSREYVAPRSEVEQQLAAIWADVLGVEQVGVTDNFFELGGDS 3636
Query: 236 LTAALCISKMNEELSLNLSIKDLFAHPTVQEMAA 269
L A +S++ + L L LS++DL + PT+ E+A
Sbjct: 3637 LLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAG 3670
|
Length = 3956 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 8e-12
Identities = 34/106 (32%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 22 QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
QA++TP++IA+V DG S+ + +L + + YL ++G V + ER + +
Sbjct: 1140 QARQTPERIALV-WDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGL 1198
Query: 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
+AI KAGG Y+PL+ YP L +L D+ +++T+ ++RL +
Sbjct: 1199 LAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQ 1244
|
Length = 4334 |
| >gnl|CDD|181044 PRK07577, PRK07577, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 9e-12
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 18/190 (9%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
++ + VTG++ GIG L L LG +V+ +AR +++ + PG + D+
Sbjct: 3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIAR---------SAIDDFPGELF--ACDLA 51
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+ ++ +D +VNN G+ + K L + ++N++ +
Sbjct: 52 DIEQTAATLAQINEI-HPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAF 110
Query: 836 LPSMLHSRRPGHILNISSNA--GVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
L M R G I+NI S A G Y+ K + G + E+++ I V
Sbjct: 111 LEGMK-LREQGRIVNICSRAIFGALDRTS---YSAAKSALVGCTRTWALELAEYGITVNA 166
Query: 894 IQAGDVKTEL 903
+ G ++TEL
Sbjct: 167 VAPGPIETEL 176
|
Length = 234 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-11
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 20/146 (13%)
Query: 13 GALHYMFRNQAKRTPDKIAVV--------DHDGRSITFKQLDEWTDIVGTYLINQGCIVG 64
GA+H +F + A++ PD+ VV RS T+KQ++E ++I+ YL+ G G
Sbjct: 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRG 295
Query: 65 STVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPS--IVITKG--- 119
V + R ++ ++ + + KAG + ++ +YPPA L AKP IVI K
Sbjct: 296 DVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTL 355
Query: 120 -----EYMDR-LE-RTSVPKVKLEND 138
+Y+D+ LE RT +P + L++D
Sbjct: 356 DQLVRDYIDKELELRTEIPALALQDD 381
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-11
Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 6 LSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGS 65
+ Y +E +H + Q RTP+ A+V D + +++ +L+ + + LI G VG
Sbjct: 3088 AAAYPSERLVHQLIEAQVARTPEAPALVFGD-QQLSYAELNRRANRLAHRLIAIG--VGP 3144
Query: 66 T--VGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123
VGV +ER +E ++ +A+ KAGG Y+PL+ YP L +++D+ +++T+ ++
Sbjct: 3145 DVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLE 3204
Query: 124 RL 125
+L
Sbjct: 3205 QL 3206
|
Length = 3956 |
| >gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 4/161 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNA-PGSIIV 769
T + KV +TG + IG + + L G +V R + L L PGS
Sbjct: 2 MTDSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAA 61
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
+ D+ + + ++V +A G +D LVNNA Y T + +W+ + N+K
Sbjct: 62 LQADLLDPDALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPF 121
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870
P L +R G I+NI+ RP G VY K
Sbjct: 122 FLSQAAAP-QLRKQR-GAIVNITDIHAERPLKGYPVYCAAK 160
|
Length = 249 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-11
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 176 LKSSGKLNKEELPKLDSIA-QIELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGH 234
L +GKL+++ LPK D+ A Q + +K +A IW +L + + +NFFE+GGH
Sbjct: 1001 LTPNGKLDRKALPKPDASAVQATFVAPQTELEKRLAAIWADVLKVERVGLTDNFFELGGH 1060
Query: 235 SLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271
SL A IS++ + L + + ++ LF H T+ A +
Sbjct: 1061 SLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAV 1097
|
Length = 3956 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-11
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 15/110 (13%)
Query: 178 SSGKLNKE------ELPKLDSIAQIELDESMFQS---------QKNIAKIWCKILNLYTL 222
SSGKL + LDS A +++ + Q IA IWC+ L + +
Sbjct: 545 SSGKLQRSACRLRLADGSLDSYALFPALQAVEAAQTAASGDELQARIAAIWCEQLKVEQV 604
Query: 223 DKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLE 272
D++FF +GG+S+ A ++++ +EL ++L+++ LF PT+ +A +
Sbjct: 605 AADDHFFLLGGNSIAATQVVARLRDELGIDLNLRQLFEAPTLAAFSAAVA 654
|
Length = 4334 |
| >gnl|CDD|215989 pfam00550, PP-binding, Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-11
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 209 IAKIWCKILNLYT-LDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEM 267
+ +I ++L + +D D++ F++G SL A ++++ EE + + DLF HPT+ E+
Sbjct: 3 LREIVAEVLGIPDEIDPDDDLFDLGLDSLLAVELLARLEEEFGVEIPPSDLFEHPTLGEL 62
Query: 268 AALL 271
AA L
Sbjct: 63 AAYL 66
|
A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Vibrio anguillarum angR has the attachment serine replaced by an alanine. Length = 66 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 8e-11
Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 176 LKSSGKLNKEELPKLD-SIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGH 234
L +GKL+++ LP+ D ++ Q + + + ++ +A IW +L L + +NFFE+GG
Sbjct: 3527 LTPNGKLDRKALPRPDAALLQQDYVAPVNELERRLAAIWADVLKLEQVGLTDNFFELGGD 3586
Query: 235 SLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLE 272
S+ + +S+ + + + KDLF H T+Q +A +
Sbjct: 3587 SIISLQVVSRA-RQAGIRFTPKDLFQHQTIQGLARVAR 3623
|
Length = 5163 |
| >gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 9e-11
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL--QNAPGSIIVKKLDV 774
+V VTG+++G+G + L GA VV R +D+ + + + +++LD+
Sbjct: 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDL 76
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMY 805
T V+ + A ID+L+NNAGVMY
Sbjct: 77 TSLASVRAAADALRAAYPRIDLLINNAGVMY 107
|
Length = 306 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 1e-10
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 176 LKSSGKLNKEELPKLD-SIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGH 234
L +GKL+++ LPK D S + ++ +A IW +L + + D++FFE+GGH
Sbjct: 2487 LNPNGKLDRKALPKPDVSQLRQAYVAPQEGLEQRLAAIWQAVLKVEQVGLDDHFFELGGH 2546
Query: 235 SLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLE 272
SL A +S++ ++L L + ++ LF PT+ AA LE
Sbjct: 2547 SLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLE 2584
|
Length = 5163 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-10
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Query: 171 LHLSILKS-----SGKLNKEELPKLDSIAQIELDESMFQSQKN-----IAKIWCKILNLY 220
LH L +GKL+++ LP LD I Q L + + +N +A IW +L +
Sbjct: 4201 LHWLWLDRLPLNANGKLDRKALPALD-IGQ--LQSQAYLAPRNELEQTLATIWADVLKVE 4257
Query: 221 TLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLE 272
+ +NFFE+GGHSL A S++ + L N+ ++ +F TV+E+A +E
Sbjct: 4258 RVGVHDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIE 4309
|
Length = 4334 |
| >gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 35/104 (33%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKK 771
L K VTGSS GIG K L GA VV R + R + ++ A G
Sbjct: 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVG 62
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNA-GVMYFTLMEKYKL 814
D+T E V ++ E G +D LV NA G M + E Y +
Sbjct: 63 ADLTDEESVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAM 106
|
Length = 248 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-10
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
+Y E +H +F Q +RTPD +A+ + R +++ +L+ + + LI +G V
Sbjct: 3052 EYPLERGVHRLFEEQVERTPDAVALAFGEQR-LSYAELNRRANRLAHRLIERGVGPDVLV 3110
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118
GV +ER LE + +AI KAGG Y+PL+ YP L +L+D+ +++++
Sbjct: 3111 GVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQ 3161
|
Length = 5163 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-10
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
+ + LH +F QA RTP A+ G+++++ +LD + + L +G V
Sbjct: 2183 EARLDQTLHGLFAAQAARTPQAPALT-FAGQTLSYAELDARANRLARALRERGVGPQVRV 2241
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
G+ +ER LE + +AI KAGG Y+PL+ YP L +++D+ ++++ + L
Sbjct: 2242 GLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGE 2301
Query: 128 --TSVPKVKLEND 138
V + LE+D
Sbjct: 2302 LPAGVARWCLEDD 2314
|
Length = 4334 |
| >gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 56/205 (27%), Positives = 84/205 (40%), Gaps = 5/205 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-LENLKTSLQNAPGSIIVKKL 772
L KV +TG SGIG + GA + V K ++ ++
Sbjct: 44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPG 103
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTL-MEKYKLEEWNAMINVNIKGVLHC 831
DV+ E K V E + ELG +DILVNNA Y +E E+ + NI H
Sbjct: 104 DVSDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHM 163
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
LP H ++ I+N S G L Y+ TK I + +L Q + + I+V
Sbjct: 164 TKAALP---HLKQGSAIINTGSITGYEGNETLIDYSATKGAIHAFTRSLAQSLVQKGIRV 220
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKY 916
+ G + T L+ D + V ++
Sbjct: 221 NAVAPGPIWTPLIPSDFDEEKVSQF 245
|
Length = 290 |
| >gnl|CDD|168204 PRK05717, PRK05717, oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
+V VTG++ GIG + L+ G +VV +DR K + + + +DV
Sbjct: 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLA--DLDRERGSKVAKALGENAWFIA-MDVAD 67
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVM--YFTLMEKYKLEEWNAMINVNIKGVL----H 830
E V V EVL + G +D LV NA + + T +E L WN ++ VN+ G + H
Sbjct: 68 EAQVAAGVAEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKH 127
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
C L + G I+N++S + Y +K + ++ AL + I+
Sbjct: 128 C-----APYLRAHN-GAIVNLASTRARQSEPDTEAYAASKGGLLALTHALAISLGP-EIR 180
Query: 891 VTCIQAG 897
V + G
Sbjct: 181 VNAVSPG 187
|
Length = 255 |
| >gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 31/200 (15%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
IF+TGSS G+G + L+ G +VV AR R + K + A G +I D++
Sbjct: 10 IFITGSSDGLGLAAARTLLHQGHEVVLHARSQKRAADAKAACPGAAGVLIG---DLSSLA 66
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838
+ +K+ +V A +G D +++NAG++ K AM+ VN+ + P
Sbjct: 67 ETRKLADQVNA-IGRFDAVIHNAGILSGPNR-KTPDTGIPAMVAVNV---------LAPY 115
Query: 839 MLHS--RRPGHILNISSN-------------AGVRPFAGLAVYTGTKYFIEGISGALRQE 883
+L + RRP ++ +SS R Y+ +K + ++ A+ +
Sbjct: 116 VLTALIRRPKRLIYLSSGMHRGGNASLDDIDWFNRGENDSPAYSDSKLHVLTLAAAVARR 175
Query: 884 VSDRNIKVTCIQAGDVKTEL 903
D + + G V T++
Sbjct: 176 WKD--VSSNAVHPGWVPTKM 193
|
Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 51/213 (23%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+L+TG TG LG L + L + + R LDL +
Sbjct: 1 KILITGATGMLGRAL-VRLLKERGYEVIGTGRSR--------------ASLFKLDLTDP- 44
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLIL----PYNALYKSNVLA 436
++E E + Y+ D+II+ AA+ + P A Y+ NVLA
Sbjct: 45 ---------DAVE--------EAIR-DYKPDVIINCAAYTRVDKCESDPELA-YRVNVLA 85
Query: 437 TKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEY 496
+NL + + H STD ++ ++E+ D + + + YG+SK++ E
Sbjct: 86 PENLARAAKEVGARLIHI-STDYVFDGKKGPYKEE----DAPNPL---NVYGKSKLLGEV 137
Query: 497 LVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVD 529
VLNA L I+R + G L+ N V+
Sbjct: 138 AVLNANPRYL---ILRTSWLYGELKNGE-NFVE 166
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|181131 PRK07814, PRK07814, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 5/200 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L ++V VTG+ G+G + GA V+ AR +L+ + ++ A V D
Sbjct: 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAAD 67
Query: 774 VTIENDVKKVVREVLAELGHIDILVNN-AGVMYFTLMEKYKLEEWNAM-INVNIKGVLHC 831
+ + + + G +DI+VNN G M L+ + +A NV L
Sbjct: 68 LAHPEATAGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTV 127
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+P ML G ++NISS G G A Y K + + ++ R I+V
Sbjct: 128 AA--VPLMLEHSGGGSVINISSTMGRLAGRGFAAYGTAKAALAHYTRLAALDLCPR-IRV 184
Query: 892 TCIQAGDVKTELLSHSTDRD 911
I G + T L D
Sbjct: 185 NAIAPGSILTSALEVVAAND 204
|
Length = 263 |
| >gnl|CDD|219957 pfam08659, KR, KR domain | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 4e-10
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 21/185 (11%)
Query: 721 VTGSSSGIGEQLVKDLVTLGAK-VVAVARRI---DRLENLKTSLQNAPGSIIVKKLDVTI 776
VTG G+G +L + L GA+ +V ++R E L L+ + V DV+
Sbjct: 5 VTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAELEARGAEVTVVACDVSD 64
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+ V+ ++ E+ A+ + +++ AGV+ L+ E++ ++ + G +
Sbjct: 65 RDAVRALLAEIRADGPPLRGVIHAAGVLRDALLANMTAEDFARVLAPKVTGAWN------ 118
Query: 837 PSMLH----SRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LH R + SS AGV G A Y F++ ++ R + + T
Sbjct: 119 ---LHEATRDRPLDFFVLFSSIAGVLGSPGQANYAAANAFLDALAHYRRA----QGLPAT 171
Query: 893 CIQAG 897
I G
Sbjct: 172 SINWG 176
|
This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181 |
| >gnl|CDD|183797 PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 4e-10
Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 22/207 (10%)
Query: 712 NTLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVV---------AVARRIDRLEN--LKT 758
N L NKV VTG S GIG + K+L GA + + +D+ E L+
Sbjct: 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQE 61
Query: 759 SLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNA----GVMYFTLMEKYKL 814
L + +LD+T + K+++ +V +LG+ ILVNNA + L
Sbjct: 62 ELLKNGVKVSSMELDLTQNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTA---- 117
Query: 815 EEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874
EE + VN++ + + + G I+N++S P G Y TK I+
Sbjct: 118 EELDKHYMVNVRATT-LLSSQFARGFDKKSGGRIINMTSGQFQGPMVGELAYAATKGAID 176
Query: 875 GISGALRQEVSDRNIKVTCIQAGDVKT 901
++ +L EV+ I V I G T
Sbjct: 177 ALTSSLAAEVAHLGITVNAINPGPTDT 203
|
Length = 256 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-10
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 176 LKSSGKLNKEELPKLD-SIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGH 234
L +GKL+++ LP D S Q + ++ +A IW +L L + +NFFE+GG
Sbjct: 2068 LTPNGKLDRKALPAPDASELQQAYVAPQSELEQRLAAIWQDVLGLEQVGLHDNFFELGGD 2127
Query: 235 SLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAA 269
S+ + +S+ + + + KDLF H TVQ +AA
Sbjct: 2128 SIISIQVVSRARQA-GIRFTPKDLFQHQTVQSLAA 2161
|
Length = 3956 |
| >gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 6e-10
Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 27/252 (10%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
KV+ +TG+S GIG G V + AR E +++ A G V DV
Sbjct: 3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVA 62
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGV----MYFTLMEKYKLEEWNAMINVNIKGVLHC 831
E DV + V + G +D LVNNAG+ M M+ +L M + N+ G C
Sbjct: 63 NEADVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLR---RMFDTNVLGAYLC 119
Query: 832 IGNILPSMLHSR--RPGHILNISSNAGV--RPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
+ R R G I+N+SS A P + Y G+K ++ ++ L +E+
Sbjct: 120 AREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVD-YAGSKGAVDTLTLGLAKELGPH 178
Query: 888 NIKVTCIQAGDVKTELLSHST----DRDVVDKYDISKAVPV---LTTKEISQSIIFALLQ 940
++V ++ G ++TE+ H++ R + P+ E++++I++ LL
Sbjct: 179 GVRVNAVRPGLIETEI--HASGGQPGRAAR----LGAQTPLGRAGEADEVAETIVW-LLS 231
Query: 941 PSHSAVNSILIE 952
+ S V L++
Sbjct: 232 DAASYVTGALLD 243
|
Length = 248 |
| >gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 39/222 (17%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKLDVT 775
V VTG GIG + + L G + R + L + L+ +I DV
Sbjct: 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVA 62
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKL-----EEWNAMINVNIKGVLH 830
+ + ++ A G ID LVNNAGV + + L E ++ ++ +N++G
Sbjct: 63 DLSAHEAMLDAAQAAWGRIDCLVNNAGV---GVKVRGDLLDLTPESFDRVLAINLRGPFF 119
Query: 831 CIGNILPSMLHSRR-----PGHILNISS-NAGVRPF---------AGLAVYTGTKYFIEG 875
+ ML I+ +SS NA + AGL++ + F
Sbjct: 120 LTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPNRGEYCISKAGLSM--AAQLF--- 174
Query: 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD 917
A R +++ I V ++ G +KT++ + V KYD
Sbjct: 175 ---AAR--LAEEGIGVYEVRPGLIKTDMTA-----PVTAKYD 206
|
Length = 256 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 8e-10
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
D + + R+ A++ PDK AV DGR T+ +LDE + + L G G V
Sbjct: 1 MQDYPLTIGRILRHGARKHPDKEAVYF-DGRRTTYAELDERVNRLANALRALGVKKGDRV 59
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
V E+ +Y A+ K G P+ P + +L+DA+ +V+ E++ L
Sbjct: 60 AVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAA 119
Query: 128 -----TSVPKVKLEND 138
+V V +E D
Sbjct: 120 ILPQLPTVRTVIVEGD 135
|
Length = 521 |
| >gnl|CDD|236099 PRK07791, PRK07791, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 9e-10
Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVA--VARRIDRLENLKTSLQN-------A 763
L +V+ VTG+ GIG GA+VV + +D + ++ Q A
Sbjct: 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA 62
Query: 764 PGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGV----MYFTLMEKYKLEEWNA 819
G + D+ + +V + G +D+LVNNAG+ M + E EEW+A
Sbjct: 63 GGEAVANGDDIADWDGAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSE----EEWDA 118
Query: 820 MINVNIKGVLH-CIGNILPSMLHSR-RPGH-----ILNISSNAGVRPFAGLAVYTGTKYF 872
+I V++KG H + + + G I+N SS AG++ G Y+ K
Sbjct: 119 VIAVHLKG--HFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQGSVGQGNYSAAKAG 176
Query: 873 IEGIS 877
I ++
Sbjct: 177 IAALT 181
|
Length = 286 |
| >gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 708 IVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI 767
++ G+ L+ K VTG SG+G + + L GA V+ ARR D +L G
Sbjct: 18 VLAGHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVARE---ALAGIDGVE 74
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVM 804
+V LD+ V+ L IDIL+NNAGVM
Sbjct: 75 VV-MLDLADLESVRAFAERFLDSGRRIDILINNAGVM 110
|
Length = 315 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 36/184 (19%), Positives = 75/184 (40%), Gaps = 13/184 (7%)
Query: 18 MFRNQAKRTPDKIAVV---DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ K PD +A++ +IT+++L E + + L++ G G V +
Sbjct: 21 RLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANR 80
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM-DRLERTSVPKV 133
EW I+ +AI G +P+ ++ P L +L++++ ++ + + + D +
Sbjct: 81 PEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCP 140
Query: 134 KLENDFLSKMISENEKFHNHVPIAEEYRKNL-VQNFESLHLSILKSSGKLNKEELPKLDS 192
K+ + + E L V E + L ++ S+G + PK D
Sbjct: 141 KVVDLIVII--------DLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDD 192
Query: 193 IAQI 196
+A I
Sbjct: 193 LATI 196
|
Length = 613 |
| >gnl|CDD|187583 cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 7/187 (3%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL--- 772
N+V V G +GE L L G V I+ EN + K
Sbjct: 2 NQVAVVIGGGQTLGEFLCHGLAEAGYDVAVA--DINS-ENAEKVADEINAEYGEKAYGFG 58
Query: 773 -DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D T E V + + V +D+LV +AG+ + ++L +++ + VN+ G C
Sbjct: 59 ADATNEQSVIALSKGVDEIFKRVDLLVYSAGIAKSAKITDFELGDFDRSLQVNLVGYFLC 118
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
M+ G I+ I+S +G + Y+ K+ G++ +L ++++ I V
Sbjct: 119 AREFSKLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDLAEHGITV 178
Query: 892 TCIQAGD 898
+ G+
Sbjct: 179 NSLMLGN 185
|
Sorbitol 6-phosphate dehydrogenase (SDH, aka glucitol 6-phosphate dehydrogenase) catalyzes the NAD-dependent interconversion of D-fructose 6-phosphate to D-sorbitol 6-phosphate. SDH is a member of the classical SDRs, with the characteristic catalytic tetrad, but without a complete match to the typical NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|169389 PRK08339, PRK08339, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 45/193 (23%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-APGSIIVKKL 772
L+ K+ F T SS GIG + + L GA V+ ++R + L+ + +++ + +
Sbjct: 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVA 65
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAG---VMYFTLMEKYKLEEWNAMINVNIKGVL 829
D+T D+++ V+E+ +G DI + G YF M +E+W + + + +
Sbjct: 66 DLTKREDLERTVKELK-NIGEPDIFFFSTGGPKPGYFMEMS---MEDWEGAVKLLLYPAV 121
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ ++P+M + G I+ +S A P +A+ + + G+ L +E+ + I
Sbjct: 122 YLTRALVPAM-ERKGFGRIIYSTSVAIKEPIPNIALSNVVRISMAGLVRTLAKELGPKGI 180
Query: 890 KVTCIQAGDVKTE 902
V I G ++T+
Sbjct: 181 TVNGIMPGIIRTD 193
|
Length = 263 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 33/131 (25%)
Query: 408 YEIDMIIHAAA-------------FVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHY 454
+ID +IH AA F+ ++NVL T L+E + +K F +
Sbjct: 73 EKIDAVIHFAAESHVDRSISDPEPFI----------RTNVLGTYTLLEAARKYGVKRFVH 122
Query: 455 VSTDSIYPSTSEN--FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPVSIV 511
+STD +Y ++ F E + TS Y SK ++ LV + GLPV I
Sbjct: 123 ISTDEVYGDLLDDGEFTE-------TSPLAPTSPYSASKAAADLLVRAYHRTYGLPVVIT 175
Query: 512 RCGNIGGSLEF 522
RC N G +F
Sbjct: 176 RCSNNYGPYQF 186
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-09
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 176 LKSSGKLNKEELPKLDSIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGHS 235
L SGKL++ LP+ Q E E + Q+ IA IW ++L L + ++FF +GGHS
Sbjct: 1611 LGPSGKLDRRALPEPV-WQQREHVEPRTELQQQIAAIWREVLGLPRVGLRDDFFALGGHS 1669
Query: 236 LTAALCISKMNEELSLNLSIKDLFAHPTVQEMAA 269
L A +S+ + + L ++ LF + A
Sbjct: 1670 LLATQIVSRTRQACDVELPLRALFEASELGAFAE 1703
|
Length = 4334 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 40/210 (19%)
Query: 322 VLLTGVTGYLGIHLLQKFLV-DTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+L+TG TG+LG +L++ L + VR + LL L
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRAL--VRSGSDAVLLDGL----------------- 41
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLS---YEIDMIIHAAAFVNLILPYNA-LYKSNVLA 436
+ +V+ DL + SL+ D + H AAF +L LY++NV
Sbjct: 42 -PVEVVEGDL----------TDAASLAAAMKGCDRVFHLAAFTSLWAKDRKELYRTNVEG 90
Query: 437 TKNLIEFSFLNKIKSFHYVSTDSIY-PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSE 495
T+N+++ + ++ + S+ + E + + Y +SK+++E
Sbjct: 91 TRNVLDAALEAGVRRVVHTSSIAALGGPPDGRIDETTPWNERPFP----NDYYRSKLLAE 146
Query: 496 YLVLNAGQMGLPVSIVRCGNIGGSLEFKNW 525
VL A GL V IV + G +
Sbjct: 147 LEVLEAAAEGLDVVIVNPSAVFGPGDEGPT 176
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM 71
E L R A+ P + A++ + G IT+ +LDE +D L +G G V V +
Sbjct: 32 ERPLTEYLRAWARERPQRPAIIFY-GHVITYAELDELSDRFAALLRQRGVGAGDRVAVFL 90
Query: 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS 129
C ++ I + I K G ++P+ + L L+DA +++ + +E+
Sbjct: 91 PNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVR 148
|
Length = 567 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 3e-09
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 9 YDAEGA-----LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIV 63
Y A G L + A R PD+ AVVD R +T+++LD D + L+ G
Sbjct: 6 YRAAGYWGDQTLGDLLAANAARHPDRTAVVD-GPRRLTYRELDAAVDRLAAGLLALGIGP 64
Query: 64 GSTVGVLMERCLEWTISYIAIHKAG 88
G V V + E+ I Y A+ K G
Sbjct: 65 GDRVLVQLPNVAEFVILYFALFKLG 89
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 4e-09
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 3/120 (2%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ A+R DK A V + +T+ +L+ L G G V + W
Sbjct: 10 LLARAARRFGDKEAYVF-GDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHW 68
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY--MDRLERTSVPKVKL 135
I+ + KAG +PL T Y +L + G + +D T +P ++
Sbjct: 69 VIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEH 128
|
Length = 513 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 5e-09
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 176 LKSSGKLNKEELPKLD-SIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGH 234
L +GKL+++ LP + S+AQ ++ +A IW +L + + D+NFFE+GG
Sbjct: 989 LTPNGKLDRKALPAPEASVAQQGYVAPRNALERTLAAIWQDVLGVERVGLDDNFFELGGD 1048
Query: 235 SLTAALCISKMNEELSLNLSIKDLFAHPTVQEMA 268
S+ + +S+ + + LS +DLF H T++ +A
Sbjct: 1049 SIVSIQVVSRARQA-GIQLSPRDLFQHQTIRSLA 1081
|
Length = 5163 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 5e-09
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
PD++A+V R +T+ +L+E + + YLI QG G VG+ +E+ + + K
Sbjct: 17 PDRVALV-CGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFK 75
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPKVKL 135
A + + Y L +LDD+ ++ + E+ R+ +PK++
Sbjct: 76 ARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRT 126
|
Length = 533 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 6e-09
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 11/168 (6%)
Query: 721 VTGSSSGIGEQLVKDLV-TLGAKVVAVARR-----IDRLENLKTSLQNAPGSIIVKKLDV 774
VTG + GIG L + L GA++V + R + +L+ ++ DV
Sbjct: 210 VTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWKAQTLAALEALGARVLYISADV 269
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
T V++++ +V G ID +++ AGV+ L+ + E++ A++ + G+L+
Sbjct: 270 TDAAAVRRLLEKVRERYGAIDGVIHAAGVLRDALLAQKTAEDFEAVLAPKVDGLLN---- 325
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQ 882
L L + SS + AG A Y F++ + LRQ
Sbjct: 326 -LAQALADEPLDFFVLFSSVSAFFGGAGQADYAAANAFLDAFAAYLRQ 372
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|236056 PRK07576, PRK07576, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 4/152 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
A K + V G +SGI + + GA V +R ++++ LQ A + D
Sbjct: 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSAD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V V+ ++ E G ID+LV+ A + + ++++++ G + +
Sbjct: 67 VRDYAAVEAAFAQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLK 126
Query: 834 NILPSMLHSRRPG-HILNISSNAGVRPFAGLA 864
P RRPG I+ IS+ P A
Sbjct: 127 AAYP---LLRRPGASIIQISAPQAFVPMPMQA 155
|
Length = 264 |
| >gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 7e-09
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA----PGSII 768
TL++K I VTG+S G+GEQ+ K GA V+ VAR +LE + ++ A P +I
Sbjct: 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIR 62
Query: 769 VKKLDVTIENDVKKVVREVLAEL-GHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVN 824
+ E + ++ + G +D +V+ AG Y + ++ + EW +N
Sbjct: 63 FDLMS-AEEKEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRIN 119
|
Length = 239 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 8e-09
Identities = 32/99 (32%), Positives = 49/99 (49%)
Query: 19 FRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
++ A+ PDKIAVVD+ G S T+ LD + +L+ +G G V + E+T
Sbjct: 29 WQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFT 88
Query: 79 ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117
I Y+A K G +PL S+ A L VL+ + +
Sbjct: 89 IIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFA 127
|
Length = 547 |
| >gnl|CDD|237189 PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 24/203 (11%)
Query: 717 KVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTS------LQNAPGSI 767
K+ VTG+S +GIG + + L G + D+ L+ S
Sbjct: 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESY 65
Query: 768 IVK----KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINV 823
V+ ++D++ +V V LG IL+NNA T +E+ E+ + V
Sbjct: 66 GVRCEHMEIDLSQPYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAV 125
Query: 824 NIKGVLHCIGNILPSML----HSRRP-GHILNISSNAGVRPFAGLAVYTGTKYFIEGISG 878
N++ +L S + + G I+N++S + P Y TK IE +
Sbjct: 126 NVRA------TMLLSSAFAKQYDGKAGGRIINLTSGQSLGPMPDELAYAATKGAIEAFTK 179
Query: 879 ALRQEVSDRNIKVTCIQAGDVKT 901
+L E++++ I V + G T
Sbjct: 180 SLAPELAEKGITVNAVNPGPTDT 202
|
Length = 256 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98
IT+ +L E D + L +G G V + M+ ++ I+Y AI +AG +P+
Sbjct: 1 VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60
Query: 99 PPALLESVLDDAKPSIVITKGEYMD 123
A LE +L+D+ ++I E D
Sbjct: 61 REAELEHILNDSGARVLIVGSELDD 85
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|180413 PRK06128, PRK06128, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 27/207 (13%)
Query: 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVV--------AVARRIDRLENLKTSLQ 761
FG L + +TG+ SGIG GA + A + +L ++ +
Sbjct: 50 FGR-LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQL--IQAEGR 106
Query: 762 NA---PGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAG-VMYFTLMEKYKLEEW 817
A PG D+ E +++V + ELG +DILVN AG + E++
Sbjct: 107 KAVALPG-------DLKDEAFCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQF 159
Query: 818 NAMINVNIKGVLHCIGNILPSMLHSRRPG-HILNISSNAGVRPFAGLAVYTGTKYFIEGI 876
+A N+ + +P + PG I+N S +P L Y TK I
Sbjct: 160 DATFKTNVYAMFWLCKAAIPHL----PPGASIINTGSIQSYQPSPTLLDYASTKAAIVAF 215
Query: 877 SGALRQEVSDRNIKVTCIQAGDVKTEL 903
+ AL ++V+++ I+V + G V T L
Sbjct: 216 TKALAKQVAEKGIRVNAVAPGPVWTPL 242
|
Length = 300 |
| >gnl|CDD|183716 PRK12744, PRK12744, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 21/200 (10%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-----ARRIDRLENLKTSLQNAPGSI 767
+L KV+ + G + +G + +DL GAK VA+ A + D E +++ A
Sbjct: 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADA-EETVAAVKAAGAKA 63
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLE----EWNAMINV 823
+ + D+T V+K+ + A G DI +N G +++K +E E++ M V
Sbjct: 64 VAFQADLTTAAAVEKLFDDAKAAFGRPDIAINTVG----KVLKKPIVEISEAEYDEMFAV 119
Query: 824 NIKGVLHCIGNILPSMLHSRRPGHILNISSN--AGVRPFAGLAVYTGTKYFIEGISGALR 881
N K I + H G I+ + ++ PF + Y G+K +E + A
Sbjct: 120 NSKSAFFFIKE---AGRHLNDNGKIVTLVTSLLGAFTPF--YSAYAGSKAPVEHFTRAAS 174
Query: 882 QEVSDRNIKVTCIQAGDVKT 901
+E R I VT + G + T
Sbjct: 175 KEFGARGISVTAVGPGPMDT 194
|
Length = 257 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 7/123 (5%)
Query: 20 RNQAKRTPDKIAVV----DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCL 75
R+ PD A++ D R +T+ L + L + G + G V + M
Sbjct: 17 RHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSP 76
Query: 76 EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL 135
E I+ +A + G + + + D P ++I +
Sbjct: 77 EAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNG---KEIALLE 133
Query: 136 END 138
+ D
Sbjct: 134 DAD 136
|
Length = 528 |
| >gnl|CDD|181120 PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 26/184 (14%)
Query: 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVA--VARRIDRLENLKTSLQNAPGSI 767
L+ KV VTG+++G+G L LGA VV VA +D + L A G+
Sbjct: 6 NTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEI--RAAGAK 63
Query: 768 IVKKL-DVTIENDVKKVVREVLAELGHIDILVNNAGV----MYFTLMEKYKLEEWNAMIN 822
V D++ ++V LG +DI+VNNAG+ M F + + EEW+A+I
Sbjct: 64 AVAVAGDISQRATADELV-ATAVGLGGLDIVVNNAGITRDRMLFNMSD----EEWDAVIA 118
Query: 823 VNIKGVLHCIGNILPSMLHSRRP---------GHILNISSNAGVRPFAGLAVYTGTKYFI 873
V+++G N + + R G I+N SS AG+ G A Y K I
Sbjct: 119 VHLRGHFLLTRN---AAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPVGQANYGAAKAGI 175
Query: 874 EGIS 877
++
Sbjct: 176 TALT 179
|
Length = 306 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 36/231 (15%)
Query: 17 YMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCL 75
Y +A PD+IA++ + +T+KQL E+ V YLI + G + +L + L
Sbjct: 6 YWIEKRAYLHPDRIAIITEE-EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSL 64
Query: 76 EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKL 135
E+ + AI K +PL L L D+ +++ + + + S+ KV
Sbjct: 65 EYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMAL--SMQKVS- 121
Query: 136 ENDFLSKMISENEKFHNHVPIAEEYRKNLVQNFESLHLSILKSSGKLNKEELPKLDSIAQ 195
++ ++IS + I + N V+ ES I +SG K PK + Q
Sbjct: 122 ---YVQRVIS----ITSLKEIEDRKIDNFVEKNESASFIICYTSGTTGK---PKGAVLTQ 171
Query: 196 IELDESMFQSQKNIAKIWCKILNLYTLDKDEN--------FFEIGGHSLTA 238
E+MF W + N + +D + F IGG L A
Sbjct: 172 ----ENMF---------WNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFA 209
|
Length = 496 |
| >gnl|CDD|235608 PRK05786, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 11/187 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K + + G S G+G + + GA+V +R ++L+ +K +L G+I D
Sbjct: 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-GNIHYVVGD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYK-LEEWNAMINVNIKGVLHCI 832
V+ + V+ + L ID LV G +E++ LEE M+ +IK L+ +
Sbjct: 62 VSSTESARNVIEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEE---MLTNHIKIPLYAV 118
Query: 833 GNILPSMLHSRRPGH-ILNISSNAGV-RPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
L + + G I+ +SS +G+ + Y K + L E+ R I+
Sbjct: 119 NASLRFL----KEGSSIVLVSSMSGIYKASPDQLSYAVAKAGLAKAVEILASELLGRGIR 174
Query: 891 VTCIQAG 897
V I
Sbjct: 175 VNGIAPT 181
|
Length = 238 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 3e-08
Identities = 28/90 (31%), Positives = 45/90 (50%)
Query: 27 PDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86
D + DG T+ LD + + L+ G G V V +E+ E Y+A +
Sbjct: 16 RDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLR 75
Query: 87 AGGGYLPLETSYPPALLESVLDDAKPSIVI 116
AG +LPL T+Y A L+ + DA+P++V+
Sbjct: 76 AGAVFLPLNTAYTLAELDYFIGDAEPALVV 105
|
Length = 504 |
| >gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 44/208 (21%), Positives = 84/208 (40%), Gaps = 13/208 (6%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
V VTG+S GIG + +L G + D+ + + A I + D+
Sbjct: 3 VAIVTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVLAAGRRAIYFQADIGE 62
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEE--WNAMINVNIKGVLHCIGN 834
+D + ++ + + G +D LVNNAG+ + L E ++ +I +N++G
Sbjct: 63 LSDHEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFDRLIAINLRGPFFLTQA 122
Query: 835 ILPSMLHSRRP-----GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ M+ I+ ++S Y +K + + L ++D I
Sbjct: 123 VARRMVEQPDRFDGPHRSIIFVTSINAYLVSPNRGEYCISKAGLSMATRLLAYRLADEGI 182
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYD 917
V I+ G + T++ + V +KYD
Sbjct: 183 AVHEIRPGLIHTDMTA-----PVKEKYD 205
|
This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 6e-08
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIV--GSTVGV 69
E +L + A+R PDK A+V GR+I++++L E + + YL + C V G V +
Sbjct: 9 ETSLFHNLEVSARRYPDKTAIV-FYGRAISYRELLEEAERLAGYLQQE-CGVRKGDRVLL 66
Query: 70 LMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
M+ ++ I+Y AI +A +P+ L + D+ + I E ++
Sbjct: 67 YMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVA 123
|
Length = 546 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 9e-08
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 15 LHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
L A D+ A++D GR++T+ +L+ + L +G G V +L
Sbjct: 7 LDSASLLFASEFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPN 66
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKV 133
LE+ + ++A+ AG Y PA + + D+ + IT E ++L ++ V
Sbjct: 67 SLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLASLALEPV 126
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|233441 TIGR01500, sepiapter_red, sepiapterin reductase | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 9e-08
Identities = 55/248 (22%), Positives = 101/248 (40%), Gaps = 32/248 (12%)
Query: 718 VIFVTGSSSGIG----EQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ-NAPG-SIIVKK 771
V VTG+S G G ++L K L + G+ +V AR + L LK + G ++
Sbjct: 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVS 61
Query: 772 LDVTIENDVKKVVREVLAELGHID----ILVNNAGVMY-----------FTLMEKYKLEE 816
LD+ E ++++++ + +L+NNAG + T ++ Y
Sbjct: 62 LDLGAEAGLEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALN 121
Query: 817 WNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876
+M+ + + R ++NISS ++PF G A+Y K + +
Sbjct: 122 LTSMLCLTSSVL-----KAFKDSPGLNRT--VVNISSLCAIQPFKGWALYCAGKAARDML 174
Query: 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSH----STDRDVVDKYDISKAVPVLTTKEISQ 932
L E + N++V G + T++ S D D+ KA L ++S
Sbjct: 175 FQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELKAKGKLVDPKVSA 234
Query: 933 SIIFALLQ 940
+ +LL+
Sbjct: 235 QKLLSLLE 242
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. Length = 256 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+ PD A D+ G +T+ QL E +D + ++ + S + V E +++
Sbjct: 12 AQTQPDFPAY-DYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFL 70
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN 137
KAG Y+P++ S P +E +++ AKPS++I E LE +P + L+
Sbjct: 71 GAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEE--LPLEILGIPVITLDE 123
|
Length = 503 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 44/222 (19%), Positives = 77/222 (34%), Gaps = 59/222 (26%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDT-KCTLFCPVRETP--NKTLLQRLEDIMLKYHMSLDLNN 378
+L+ G TG++G L ++ L + TL VR T +K + + + DL +
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLL--VRNTKRLSKEDQEPVAVVEG------DLRD 52
Query: 379 YTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATK 438
V+ +D++IH A + +V T+
Sbjct: 53 LDSLSDAVQ---------------------GVDVVIHLAGAPRDTRDFCE---VDVEGTR 88
Query: 439 NLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLV 498
N++E + +K F ++S+ Y E + Y K +E ++
Sbjct: 89 NVLEAAKEAGVKHFIFISSLGAYGDLHEETEPS---PSSP--------YLAVKAKTEAVL 137
Query: 499 LNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITR 540
+ LP +IVR G I G DL I A+
Sbjct: 138 R---EASLPYTIVRPGVIYG----------DLARAIANAVVT 166
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-07
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 38 RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETS 97
++IT+ +L E + LI G G V +L E EW I+ +AI AG +P+ +
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63
Query: 98 YPPALLESVLDDAKPSIVIT 117
P + +L+D+ +V
Sbjct: 64 SSPEEVAYILNDSGARVVFV 83
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 31/201 (15%)
Query: 321 NVLLTGVTGYLGIHLLQKFL--VDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNN 378
+VL+TG +G+ G L+++ L T F + + +I ++ D+ +
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSF-DIAPPGEALSAWQHPNI--EFLKG-DITD 56
Query: 379 YTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATK 438
D ++ D + H AA V L P + ++ NV T+
Sbjct: 57 RND---------------VEQALS------GADCVFHTAAIVPLAGPRDLYWEVNVGGTQ 95
Query: 439 NLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLV 498
N+++ ++ F Y S+ S+ D T+ Y ++K ++E +V
Sbjct: 96 NVLDACQRCGVQKFVYTSSSSVIFGGQNIHNGDETLPYPPLDSDM---YAETKAIAEIIV 152
Query: 499 LNA-GQMGLPVSIVRCGNIGG 518
L A G+ L +R I G
Sbjct: 153 LEANGRDDLLTCALRPAGIFG 173
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 27/126 (21%)
Query: 400 QDEYVSLSYEIDMIIHAAA--FVNLI-LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVS 456
+ D++ HAAA V + K+NVL TKN+I+ + N ++ F +S
Sbjct: 68 RLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIENGVEKFVCIS 127
Query: 457 TD-SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM--GLPVSIVRC 513
TD ++ P + G +K V+E L+L + S VR
Sbjct: 128 TDKAVNP---------------------VNVMGATKRVAEKLLLAKNEYSSSTKFSTVRF 166
Query: 514 GNIGGS 519
GN+ GS
Sbjct: 167 GNVLGS 172
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 2e-07
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 17/154 (11%)
Query: 721 VTGSSSGIGEQLVKDLVTLGA-KVVAVARRI---DRLENLKTSLQNAPGSIIVKKLDVTI 776
+TG G+G L + L GA ++V ++R L L+ A + V DV
Sbjct: 5 ITGGLGGLGRALARWLAERGARRLVLLSRSGPDAPGAAALLAELEAAGARVTVVACDVAD 64
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+ + V+ + A G + +++ AGV+ ++ E + A++ G +
Sbjct: 65 RDALAAVLAAIPAVEGPLTGVIHAAGVLDDGVLASLTPERFAAVLAPKAAGAWN------ 118
Query: 837 PSMLH----SRRPGHILNISSNAGVRPFAGLAVY 866
LH + SS AGV G A Y
Sbjct: 119 ---LHELTADLPLDFFVLFSSIAGVLGSPGQANY 149
|
It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180 |
| >gnl|CDD|187589 cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 56/266 (21%), Positives = 90/266 (33%), Gaps = 67/266 (25%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
I +TG++SGIG + L G V+ + R +I D++
Sbjct: 1 TIVITGAASGIGAATAELLEDAGHTVIGIDLR--------------EADVIA---DLSTP 43
Query: 778 NDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+ +VLA G +D LVN AGV T+ ++ VN G+ + +L
Sbjct: 44 EGRAAAIADVLARCSGVLDGLVNCAGVGGTTVAG--------LVLKVNYFGLRALMEALL 95
Query: 837 PSMLHSRRPGH---ILNISSNAGVRPFA---------------------------GLAVY 866
P + R GH + +SS AG G Y
Sbjct: 96 PRL----RKGHGPAAVVVSSIAGAGWAQDKLELAKALAAGTEARAVALAEHAGQPGYLAY 151
Query: 867 TGTKY-FIEGISGALRQEVSDRNIKVTCIQAGDVKTELL--SHSTDR--DVVDKYDISKA 921
G+K + ++V + G V+T +L R + VD ++
Sbjct: 152 AGSKEALTVWTRRRAATWLYGAGVRVNTVAPGPVETPILQAFLQDPRGGESVDA-FVTPM 210
Query: 922 VPVLTTKEISQSIIFALLQPSHSAVN 947
EI+ I F L + S +N
Sbjct: 211 GRRAEPDEIAPVIAF-LASDAASWIN 235
|
Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-07
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ R A+R PDK A+V D RS T+ +LD + V L++ G G V L +
Sbjct: 16 ILRRSARRYPDKTALVFGD-RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAY 74
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
+ ++A +AG ++P+ L +LD + + E
Sbjct: 75 ALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAE 123
|
Length = 523 |
| >gnl|CDD|212496 cd11730, Tthb094_like_SDR_c, Tthb094 and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 22/188 (11%)
Query: 720 FVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEND 779
+ G++ GIG L + L G +++ R L L + G++ DV E +
Sbjct: 2 LILGATGGIGRALARALAGRGWRLLLSGRDAGALAGLAAEV----GALARPA-DVAAELE 56
Query: 780 VKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSM 839
V + ELG +D+LV AG + + + K W +++ N+ G + + L +
Sbjct: 57 ----VWALAQELGPLDLLVYAAGAILGKPLARTKPAAWRRILDANLTGAALVLKHALALL 112
Query: 840 LHSRRPGHILNISSNAGVRP----FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
++ + G P GL+ Y K +E R+EV R +++T ++
Sbjct: 113 AAG---ARLVFL----GAYPELVMLPGLSAYAAAKAALEAYVEVARKEV--RGLRLTLVR 163
Query: 896 AGDVKTEL 903
V T L
Sbjct: 164 PPAVDTGL 171
|
Tthb094 from Thermus Thermophilus is a classical SDR which binds NADP. Members of this subgroup contain the YXXXK active site characteristic of SDRs. Also, an upstream Asn residue of the canonical catalytic tetrad is partially conserved in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 206 |
| >gnl|CDD|169390 PRK08340, PRK08340, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
+ VT SS GIG + ++L+ GA+VV +R + LE L+ G + K D++ ++
Sbjct: 3 VLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY-GEVYAVKADLSDKD 61
Query: 779 DVKKVVREVLAELGHIDILVNNAG 802
D+K +V+E LG ID LV NAG
Sbjct: 62 DLKNLVKEAWELLGGIDALVWNAG 85
|
Length = 259 |
| >gnl|CDD|235914 PRK07041, PRK07041, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 45/185 (24%), Positives = 67/185 (36%), Gaps = 12/185 (6%)
Query: 721 VTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDV 780
V G SSGIG L + GA+V +R DRL +L + LD+T E V
Sbjct: 2 VVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-GAPVRTAALDITDEAAV 60
Query: 781 KKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSML 840
E G D +V A + L A ++ G +
Sbjct: 61 DAFFAEA----GPFDHVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYR-----VARAA 111
Query: 841 HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVK 900
G + +S A VRP A + +E ++ L E++ ++V + G V
Sbjct: 112 RIAPGGSLTFVSGFAAVRPSASGVLQGAINAALEALARGLALELAP--VRVNTVSPGLVD 169
Query: 901 TELLS 905
T L S
Sbjct: 170 TPLWS 174
|
Length = 230 |
| >gnl|CDD|222222 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 740 GAKVV----AVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795
GA+VV A R+ ++ L L P +I LDVT + D+ ++ +V + G ID
Sbjct: 20 GAEVVLTTWPPALRMGAVDELAKEL---PADVIP--LDVTSDEDIDELFEKVKEDGGKID 74
Query: 796 ILVNNAGVMYFTLMEKYKLE---EW-NAMINVNIK---GVLHCIGNILPSMLHSRRPGHI 848
LV++ + K L+ E ++++ + ++ G I
Sbjct: 75 FLVHSIAMSPEIRKGKPYLDTSREGFLKALDISAYSFISLAKAAKPLMNEG------GSI 128
Query: 849 LNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKT 901
+ +S A R F G K +E ++ L E+ + I+V I AG KT
Sbjct: 129 VALSYIAAERVFPGYGGMGVAKAALESLARYLAYELGRKGIRVNTISAGPTKT 181
|
Length = 239 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-07
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 19 FRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
F A R PD+ A++ + +SI++ +L+ + + +G G V +LME E+
Sbjct: 43 FEEAAARHPDRPALLF-EDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYL 101
Query: 79 ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT 128
+++ + K G L T A+L L+ +I E ++ E
Sbjct: 102 AAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEA 151
|
Length = 600 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 8e-07
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 54/212 (25%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNK-TLLQRLEDIMLK-YHMSLDLNN 378
VL+TG G +G L ++ L + P + L R E K Y + ++L
Sbjct: 252 TVLVTGGGGSIGSELCRQIL-----------KFNPKEIILFSRDE---YKLYLIDMELRE 297
Query: 379 YTDRLILVKSDLSLEMLG-LKNQD--EYVSLSYEIDMIIHAAAFVNL-ILPYNAL--YKS 432
L L +G ++++D E +++D++ HAAA ++ ++ YN K+
Sbjct: 298 KFPELKLR------FYIGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKT 351
Query: 433 NVLATKNLIEFSFLNKIKSFHYVSTD-SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSK 491
NVL T+N+ E + N +K F +STD ++ P T+ G +K
Sbjct: 352 NVLGTENVAEAAIKNGVKKFVLISTDKAVNP---------------------TNVMGATK 390
Query: 492 IVSEYLVLNAGQMGLP----VSIVRCGNIGGS 519
++E L A + +VR GN+ GS
Sbjct: 391 RLAEKLFQAANRNVSGTGTRFCVVRFGNVLGS 422
|
Length = 588 |
| >gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL-QNAPGS-IIVKK 771
L+ K VTG+S G+G L + L GA+V+ R + E ++ P + + ++
Sbjct: 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRA 71
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVM 804
LD++ V + ++ AE I +L+NNAGVM
Sbjct: 72 LDLSSLASVAALGEQLRAEGRPIHLLINNAGVM 104
|
Length = 313 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 20/92 (21%), Positives = 36/92 (39%)
Query: 34 DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93
G +TF L + + L G G V ++ +E+ ++ AGG
Sbjct: 5 ADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSA 64
Query: 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
SY P L L +KP ++ + +D++
Sbjct: 65 ANPSYTPDELAHQLKISKPKLIFCDPDELDKV 96
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 31/122 (25%)
Query: 407 SYEIDMIIHAAAF--VNLILPYNAL--YKSNVLATKNLIEFSFLNKIKSFHYVSTD-SIY 461
+ +D + HAAA V L + YN + K+NVL T+N+ E + N ++ F +STD ++
Sbjct: 71 QHGVDTVFHAAALKHVPL-VEYNPMEAIKTNVLGTENVAEAAIENGVEKFVLISTDKAVN 129
Query: 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIG 517
P T+ G +K ++E L A G S+VR GN+
Sbjct: 130 P---------------------TNVMGATKRLAEKLFQAANRESGSGKTRFSVVRFGNVL 168
Query: 518 GS 519
GS
Sbjct: 169 GS 170
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT- 775
+ + +TG+S G+GE + L+ G V++++R + + L + ++ LD+
Sbjct: 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTEN--KELTKLAEQYNSNLTFHSLDLQD 59
Query: 776 ---IENDVKKVVREV-LAELGHIDILVNNAG-VMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+E + +++ + + I L+NNAG V +EK + EE +++N+
Sbjct: 60 VHELETNFNEILSSIQEDNVSSI-HLINNAGMVAPIKPIEKAESEELITNVHLNL----- 113
Query: 831 CIGNILPSMLHSRRPGH---------ILNISSNAGVRPFAGLAVYTGTK----YFIEGIS 877
+ P +L S H ++NISS A P+ G + Y +K F + +
Sbjct: 114 ----LAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPYFGWSAYCSSKAGLDMFTQTV- 168
Query: 878 GALRQEVSDRNIKVTCIQAGDVKTEL 903
A QE + +K+ G + T +
Sbjct: 169 -ATEQEEEEYPVKIVAFSPGVMDTNM 193
|
Length = 251 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 22 QAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTIS 80
A+ P ++A VD GR T+ +LD + L +GC+ G + VL +
Sbjct: 4 HARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVAL 63
Query: 81 YIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116
+ A + G Y+PL + L+++L DA+P +++
Sbjct: 64 HFACARVGAIYVPLNWRLSASELDALLQDAEPRLLL 99
|
Length = 488 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 24/89 (26%), Positives = 37/89 (41%)
Query: 41 TFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100
TF +L E +D +L + G G V VL+ R E + K G ++P T P
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 101 ALLESVLDDAKPSIVITKGEYMDRLERTS 129
+ L+ A ++T + L TS
Sbjct: 62 KDIRYRLERAGARAIVTSADDPALLYFTS 90
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+ +TG+SSG+G K L G V +A R + E + S V D+
Sbjct: 2 GTVVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEVGMPKDSYSVLHCDLA 61
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGV 803
+ V++ V +D LV NA V
Sbjct: 62 SLDSVRQFVDNFRRTGRPLDALVCNAAV 89
|
Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 5e-06
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 22 QAKRTPDK----IAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+A PD + D + ++T+ +LD + L G G V +L L++
Sbjct: 2 RAAAQPDARYTFLFDDDDEEETLTYAELDRRARAIAARLQALGA-PGDRVLLLAPPGLDF 60
Query: 78 TISYIAIHKAGGGYLPLETSYPP-------ALLESVLDDAKPSIVITKGEYMDRLER 127
++ AG +P PP A L ++L DA V+T + L
Sbjct: 61 VAAFFGCLYAGAIAVPA---PPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRA 114
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 44/200 (22%), Positives = 75/200 (37%), Gaps = 47/200 (23%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
VL+TG G++G L+ K L+ + VR N L ++ D++++T
Sbjct: 1 KVLVTGANGFIGRALVDK-LLSRGEEVRIAVRNAENAEPSVVLAEL-------PDIDSFT 52
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVN-----LILPYNALYKSNVL 435
D + V D ++H AA V+ P + K N
Sbjct: 53 DLFLGV------------------------DAVVHLAARVHVMNDQGADPLSDYRKVNTE 88
Query: 436 ATKNLIEFSFLNKIKSFHYVSTDSIY--PSTSENFQEDYTVADFDDFMTTTSGYGQSKIV 493
T+ L + +K F ++S+ + + F E D YG+SK+
Sbjct: 89 LTRRLARAAARQGVKRFVFLSSVKVNGEGTVGAPFDE-------TDPPAPQDAYGRSKLE 141
Query: 494 SEYLVLNAG-QMGLPVSIVR 512
+E +L G G+ V I+R
Sbjct: 142 AERALLELGASDGMEVVILR 161
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|212497 cd11731, Lin1944_like_SDR_c, Lin1944 and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 33/187 (17%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
I V G++ IG + + L G +V+ R +S G V D+T E
Sbjct: 1 IIVIGATGTIGLAVAQLLSAHGHEVITAGR---------SS-----GDYQV---DITDEA 43
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKG----VLHCIGN 834
+K + +V GH D +V+ AG F + + ++ +N + G V H +
Sbjct: 44 SIKALFEKV----GHFDAIVSTAGDAEFAPLAELTDADFQRGLNSKLLGQINLVRHGLPY 99
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
+ G I S RP G A +EG A E+ I++ +
Sbjct: 100 LNDG-------GSITLTSGILAQRPIPGGAAAATVNGALEGFVRAAAIELPRG-IRINAV 151
Query: 895 QAGDVKT 901
G V+
Sbjct: 152 SPGVVEE 158
|
Lin1944 protein from Listeria Innocua is a classical SDR, it contains a glycine-rich motif similar to the canonical motif of the SDR NAD(P)-binding site. However, the typical SDR active site residues are absent in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 198 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 40/216 (18%), Positives = 72/216 (33%), Gaps = 61/216 (28%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+L+TG G LG L + L +++ LD+ T
Sbjct: 2 KILITGANGQLGTELRR---------------------ALPGEFEVIATDRAELDI---T 37
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNL---ILPYNALYKSNVLAT 437
D +++ V D++I+AAA+ + + N
Sbjct: 38 DPDAVLE----------------VIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGA 81
Query: 438 KNLIEFSFLNKIKS-FHYVSTDSIYP-STSENFQEDYTVADFDDFMTTTSGYGQSKIVSE 495
+NL + ++ + ++STD ++ ++E D + YG+SK+ E
Sbjct: 82 ENLARAA--AEVGARLVHISTDYVFDGEKGGPYKE-------TDTPNPLNVYGRSKLAGE 132
Query: 496 YLVLNAGQMGLPVSIVRC----GNIGGSLEFKNWNL 527
V AG L I+R G G + L
Sbjct: 133 EAVRAAGPRHL---ILRTSWVYGEYGNNFVKTMLRL 165
|
Length = 281 |
| >gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 721 VTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDV 780
+TG+SSG+G K L G V+ R + + E L P S + +D+ + V
Sbjct: 11 ITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSV 70
Query: 781 KKVVREVLAELGH-IDILVNNAGVMYFTLMEK 811
++ V + LG +D LV NA V Y L+++
Sbjct: 71 RRFVDD-FRALGKPLDALVCNAAV-YMPLLKE 100
|
Length = 322 |
| >gnl|CDD|187630 cd05372, ENR_SDR, Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 25/199 (12%)
Query: 717 KVIFVTG--SSSGIGEQLVKDLVTLGAKVV---AVARRIDRLENLKTSLQNAPGSIIVKK 771
K I +TG + I + K L GA++ R+E L L S +V
Sbjct: 2 KRILITGIANDRSIAWGIAKALHEAGAELAFTYQPEALRKRVEKLAERL---GESALVLP 58
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV+ + ++K++ EV + G +D LV++ ++ ++ + KG L
Sbjct: 59 CDVSNDEEIKELFAEVKKDWGKLDGLVHSIAFAPKVQLKG-------PFLDTSRKGFLKA 111
Query: 832 IGNI----LPSMLHSRRP-----GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQ 882
+ +I L S+ + P G I+ +S R G V K +E L
Sbjct: 112 L-DISAYSLVSLAKAALPIMNPGGSIVTLSYLGSERVVPGYNVMGVAKAALESSVRYLAY 170
Query: 883 EVSDRNIKVTCIQAGDVKT 901
E+ + I+V I AG +KT
Sbjct: 171 ELGRKGIRVNAISAGPIKT 189
|
This bacterial subgroup of ENRs includes Escherichia coli ENR. ENR catalyzes the NAD(P)H-dependent reduction of enoyl-ACP in the last step of fatty acid biosynthesis. De novo fatty acid biosynthesis is catalyzed by the fatty acid synthetase complex, through the serial addition of 2-carbon subunits. In bacteria and plants,ENR catalyzes one of six synthetic steps in this process. Oilseed rape ENR, and also apparently the NADH-specific form of Escherichia coli ENR, is tetrameric. Although similar to the classical SDRs, this group does not have the canonical catalytic tetrad, nor does it have the typical Gly-rich NAD-binding pattern. Such so-called divergent SDRs have a GXXXXXSXA NAD-binding motif and a YXXMXXXK (or YXXXMXXXK) active site motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 19/81 (23%), Positives = 41/81 (50%)
Query: 37 GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
GR T+ +L E + + L+ G G V ++++ C E+ ++ A++K G +P+ T
Sbjct: 1 GRRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINT 60
Query: 97 SYPPALLESVLDDAKPSIVIT 117
+ L +LD + +++
Sbjct: 61 ALRGEELAHILDHSGARLIVV 81
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
LH++ + A R PD A+V HD R++T+ L E + + L G G V + +++
Sbjct: 2 LHHLLEDAAARLPDATALVHHD-RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKR 60
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT 128
LE + AGG ++P+ + +L D +++T E +D L
Sbjct: 61 LETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPA 114
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|180796 PRK07023, PRK07023, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 721 VTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDV 780
VTG S G+G L + L+ G V+ VAR R +L + A + +LD++ D
Sbjct: 6 VTGHSRGLGAALAEQLLQPGIAVLGVARS--RHPSLAAA---AGERLAEVELDLS---DA 57
Query: 781 KKVVR----EVLAELG---HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCI 832
++LA +L+NNAG + + + +N+ L
Sbjct: 58 AAAAAWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPL--- 114
Query: 833 GNILPSMLHSRRPG----HILNISSNAGVRPFAGLAVYTGTK 870
+L + L IL+ISS A +AG +VY TK
Sbjct: 115 --MLTAALAQAASDAAERRILHISSGAARNAYAGWSVYCATK 154
|
Length = 243 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 21 NQAKRTPDKIAVV-DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79
A+ TPDK AV+ G +T+++LDE ++ + + G G V + ME L +
Sbjct: 5 IHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLE 64
Query: 80 SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD--RLERTSVPKVKLE 136
A ++G Y + + PA ++DD+ +IT +D R P V+
Sbjct: 65 VCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHR 123
|
Length = 511 |
| >gnl|CDD|214834 smart00823, PKS_PP, Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 222 LDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271
+D D F ++G SL A +++ L L +F HPT +A L
Sbjct: 33 IDPDRPFRDLGLDSLMAVELRNRLEAATGLRLPATLVFDHPTPAALAEHL 82
|
Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. Length = 86 |
| >gnl|CDD|236389 PRK09134, PRK09134, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 10/145 (6%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVK 770
+ A + VTG++ IG + DL G V V R D E L ++ +
Sbjct: 5 SMAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVAL 64
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+ D+ E +V+ +V A LG I +LVNNA + + + W+ + N++
Sbjct: 65 QADLADEAEVRALVARASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPF- 123
Query: 831 CIGNILPSMLHSRRP----GHILNI 851
+L P G ++N+
Sbjct: 124 ----VLAQAFARALPADARGLVVNM 144
|
Length = 258 |
| >gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 17/168 (10%)
Query: 721 VTGSSSGIGEQLVKDLVTLGAK-VVAVARRI--DRLENLKTSLQNAPGSIIVKKLDVTIE 777
+TG G+G + + L GA+ +V ++RR R L+ + V + DVT
Sbjct: 155 ITGGLGGLGLLVARWLAARGARHLVLLSRRGPAPRAAARAALLRAGGARVSVVRCDVTDP 214
Query: 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILP 837
+ ++ E LA G + +++ AGV+ L+ + + A++ + G L+
Sbjct: 215 AALAALLAE-LAAGGPLAGVIHAAGVLRDALLAELTPAAFAAVLAAKVAGALN------- 266
Query: 838 SMLHSRRPGH----ILNISSNAGVRPFAGLAVYTGTKYFIEGISGALR 881
LH P + SS A + AG A Y F++ ++ R
Sbjct: 267 --LHELTPDLPLDFFVLFSSVAALLGGAGQAAYAAANAFLDALAAQRR 312
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+ P IA + G+ +T++QL E +D + ++ + S + V ++++
Sbjct: 10 AETYPQTIAY-RYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFL 68
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLENDFLSK 142
K+G Y+P++TS P +E +++ A P +VI E T + + +
Sbjct: 69 GSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVGTQIITLSALEQAETS 128
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 34/205 (16%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+L+TG GY+G H +++ L + ++ L R E I ++ +
Sbjct: 1 KILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRGERI---TPVTFVEGDLR 57
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFV----NLILPYNALYKSNVLA 436
DR +L D E ++ID +IH A + ++ P Y++NV+
Sbjct: 58 DRELL---DRLFE-------------EHKIDAVIHFAGLIAVGESVQKPLK-YYRNNVVG 100
Query: 437 TKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDYTVADFDDFMTTTSGYGQSKIVSE 495
T NL+E +K F + S+ ++Y S ED + + YG+SK++SE
Sbjct: 101 TLNLLEAMQQAGVKKFIFSSSAAVYGEPSSIPISEDSPLG-------PINPYGRSKLMSE 153
Query: 496 YLVLNA--GQMGLPVSIVRCGNIGG 518
++ + I+R N+ G
Sbjct: 154 QILRDLQKADPDWSYVILRYFNVAG 178
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 35 HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL 94
+S+T+++L + + L G G V +L+ E +++A KAG + L
Sbjct: 6 CGEQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVAL 65
Query: 95 ETSYPPALLESVLDDAKPSIVITKGEYMDRLERTS----VPK 132
P LE +LDD+ ++++T+ + + TS PK
Sbjct: 66 NPLLTPQDLEHILDDSGAALLVTEADDIAYWLYTSGTTGKPK 107
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 410 IDMIIHAAAFVNLILP--YNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY--PSTS 465
+ ++IH AA V++ P Y L + NV T+ ++E N +K Y S+ +
Sbjct: 73 VSVVIHTAAIVDVFGPPNYEELEEVNVNGTQAVLEACVQNNVKRLVYTSSIEVAGPNFKG 132
Query: 466 ENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA-GQM 504
++D T+T Y SK+++E +VLNA G
Sbjct: 133 RPIFNGVEDTPYED--TSTPPYASSKLLAENIVLNANGAP 170
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|235527 PRK05599, PRK05599, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 6e-05
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 22/175 (12%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL-QNAPGSIIVKKLDVTIE 777
I + G +S I ++ L G VV ARR + + L + L Q S+ V D
Sbjct: 3 ILILGGTSDIAGEIATLLCH-GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDL 61
Query: 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV--------L 829
+ +++V++ G I + V G++ E+ + +E +A V I V L
Sbjct: 62 DTHRELVKQTQELAGEISLAVVAFGIL--GDQERAETDEAHA---VEIATVDYTAQVSML 116
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK----YFIEGISGAL 880
+ + L + P I+ SS AG R VY TK F +G++ +L
Sbjct: 117 TVLADELRAQTA---PAAIVAFSSIAGWRARRANYVYGSTKAGLDAFCQGLADSL 168
|
Length = 246 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 7e-05
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
DY E + +F Q P +IA D + ++ +L+ + +G L G V V
Sbjct: 3715 DYPLEQSYVRLFEAQVAAHPQRIAASCLD-QQWSYAELNRAANRLGHALRAAGVGVDQPV 3773
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLD 108
+L ER L+ + KAG GYLPL+ P L+ +++
Sbjct: 3774 ALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIE 3814
|
Length = 4334 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 7e-05
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99
+++ +L E + V L + G G V L+ R E ++ +A + G Y+PL T++
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 100 PALLESVLDDAKPSIVITKGEYMDRL 125
P +E L + +V+T +L
Sbjct: 61 PKAIEYRLGHSGAKVVVTNAANRGKL 86
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 8e-05
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 39 SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98
S+TF++LD+ + L G G V +L + +E+ + ++A+ + G LPL
Sbjct: 1 SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60
Query: 99 PPALLESVLDDAKP------SIVITKG 119
P L+ L D +P +I+ T G
Sbjct: 61 PQEELQQQLADLQPDLDRPATIIFTSG 87
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-05
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+R PD+ A++D G ++T+ +LDE ++ + L+ G G V VL + ++
Sbjct: 59 ARRAPDRAALIDERG-TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALY 117
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
A K G + L T + L V ++ E+ D L
Sbjct: 118 AAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLS 161
|
Length = 549 |
| >gnl|CDD|187619 cd05361, haloalcohol_DH_SDR_c-like, haloalcohol dehalogenase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 777 ENDVKKVVREVLAELGHIDILVNN-AGVMYFTLMEKYKLEEWNAMIN-VNIKGVLHCIGN 834
E +++V VL G ID+LV+N ++ + ++I +
Sbjct: 56 EQKPEELVDAVLQAGGAIDVLVSNDYIPRPMNPIDGTSEADIRQAFEALSIFPFA--LLQ 113
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
+ + G I+ I+S +P A ++Y + ++ +L +E+S NI V I
Sbjct: 114 AAIAQMKKAGGGSIIFITSAVPKKPLAYNSLYGPARAAAVALAESLAKELSRDNILVYAI 173
|
Dehalogenases cleave carbon-halogen bonds. Haloalcohol dehalogenase show low sequence similarity to short-chain dehydrogenases/reductases (SDRs). Like the SDRs, haloalcohol dehalogenases have a conserved catalytic triad (Ser-Tyr-Lys/Arg), and form a Rossmann fold. However, the normal classical SDR NAD(P)-binding motif (TGXXGXG) and NAD-binding function is replaced with a halide binding site, allowing the enzyme to catalyze a dehalogenation reaction. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 42/168 (25%), Positives = 65/168 (38%), Gaps = 35/168 (20%)
Query: 376 LNNYTDRLILVKSDLS----LEML-GLKNQDEY---------------VSLSYEIDMIIH 415
LN + D ++ L+ LE L +++ Y + Y+ D ++H
Sbjct: 21 LNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80
Query: 416 AAA--FV-NLILPYNALYKSNVLATKNLIE-FSFLNKIKSFHYVSTDSIY---PSTSENF 468
AA V I ++NV+ T L+E FH++STD +Y + F
Sbjct: 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAF 140
Query: 469 QEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPVSIVRCGN 515
E +S Y SK S+ LV + GLP +I RC N
Sbjct: 141 TETTPYN-------PSSPYSASKAASDLLVRAYVRTYGLPATITRCSN 181
|
Length = 340 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 408 YEIDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKS--FHYVSTDSIYP 462
++ D ++H AA ++ I A ++NV+ T L+E + FH++STD +Y
Sbjct: 72 HQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLE-AVRKYWHEFRFHHISTDEVYG 130
Query: 463 STSENFQEDYTVADFDDFMTTT-----SGYGQSKIVSEYLVLNAGQM-GLPVSIVRCGNI 516
+ D F TT S Y SK S++LV + GLP I RC N
Sbjct: 131 DLEKG----------DAFTETTPLAPSSPYSASKAASDHLVRAYHRTYGLPALITRCSNN 180
Query: 517 GGSLEF 522
G +F
Sbjct: 181 YGPYQF 186
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 55/231 (23%)
Query: 306 FWKSVQLNSNKLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLED 365
FW+ K VL+TG TG+ G L +L + + + P L
Sbjct: 1 FWQ------GK----RVLVTGHTGFKGSWLSL-WLQELGAKVIGYSLDPPTNPNL----- 44
Query: 366 IMLKYHMSLDLNNYTDRLILVKSDL-SLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLIL 424
+L N +++ + D+ L L YE +++ H AA + L
Sbjct: 45 --------FELANLDNKISSTRGDIRDLNAL------REAIREYEPEIVFHLAAQPLVRL 90
Query: 425 PYN---ALYKSNVLATKNLIEFS-FLNKIKSFHYVSTDSIYPSTS--ENFQEDYTVADFD 478
Y +++NV+ T NL+E +K+ V++D Y + ++E+ + D
Sbjct: 91 SYKDPVETFETNVMGTVNLLEAIRETGSVKAVVNVTSDKCYENKEWGWGYRENDPLGGHD 150
Query: 479 DFMTTTSGYGQSK-----IVSEY-----LVLNAGQMGLPVSIVRCGN-IGG 518
Y SK I+S Y N G+ G+ ++ R GN IGG
Sbjct: 151 P-------YSSSKGCAELIISSYRNSFFNPENYGKHGIAIASARAGNVIGG 194
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|181188 PRK07985, PRK07985, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 10/195 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVA--VARRIDRLENLKTSLQNAPGSIIVKK 771
L ++ VTG SGIG GA V + + +++K ++ ++
Sbjct: 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLP 106
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYK---LEEWNAMINVNIKGV 828
D++ E + +V E LG +DI+ AG + E++ +N+ +
Sbjct: 107 GDLSDEKFARSLVHEAHKALGGLDIMALVAGKQ--VAIPDIADLTSEQFQKTFAINVFAL 164
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+P + I+ SS +P L Y TK I S L ++V+++
Sbjct: 165 FWLTQEAIP---LLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKG 221
Query: 889 IKVTCIQAGDVKTEL 903
I+V + G + T L
Sbjct: 222 IRVNIVAPGPIWTAL 236
|
Length = 294 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 48/211 (22%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+L+TG G++G HL+ + L E N+ + D +L++
Sbjct: 1 RILVTGGAGFIGSHLVDRLL------------EEGNEV---VVVD---------NLSSGR 36
Query: 381 DRLI---LVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNA---LYKSNV 434
I L + + V+ + D + H AA ++ L + NV
Sbjct: 37 RENIEPEFENKAFRFVKRDLLDTADKVAKK-DGDTVFHLAANPDVRLGATDPDIDLEENV 95
Query: 435 LATKNLIEFSFLNKIKSFHYVSTDSIY-----PSTSENFQEDYTVADFDDFMTTTSGYGQ 489
LAT N++E N +K + S+ ++Y T E++ S YG
Sbjct: 96 LATYNVLEAMRANGVKRIVFASSSTVYGEAKVIPTPEDYP-----------PLPISVYGA 144
Query: 490 SKIVSE-YLVLNAGQMGLPVSIVRCGNIGGS 519
SK+ +E + A G I R NI G
Sbjct: 145 SKLAAEALISAYAHLFGFQAWIFRFANIVGP 175
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 36 DG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93
DG R+ T+ +L + + + L G G VG+ M E ++ +AI K G +P
Sbjct: 2 DGSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVP 61
Query: 94 LETSYPPALLESVLDDAKPSIVITKGEYMDR 124
+ + + P + + L DA+ ++IT ++ R
Sbjct: 62 IFSGFGPDAVATRLQDAEAKVLITADGFLRR 92
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 47/207 (22%), Positives = 69/207 (33%), Gaps = 46/207 (22%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
VL+ G G++G HL+ L + VR L + Y +Y
Sbjct: 1 RVLIVGGNGFIGSHLVDALLEE-----GPQVRVFDRSIPPYELPLGGVDYIKG----DYE 51
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIH-------AAAFVNLILPYNALYKSN 433
+R L + L ID +IH A + N IL +N
Sbjct: 52 NRADLESA--------LVG----------IDTVIHLASTTNPATSNKNPILDIQ----TN 89
Query: 434 VLATKNLIEFSFLNKIKSFHYVST-DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKI 492
V T L+E I + S+ ++Y + D S YG SK+
Sbjct: 90 VAPTVQLLEACAAAGIGKIIFASSGGTVYG------VPEQLPISESDPTLPISSYGISKL 143
Query: 493 VSE-YLVLNAGQMGLPVSIVRCGNIGG 518
E YL L GL +++R N G
Sbjct: 144 AIEKYLRLYQYLYGLDYTVLRISNPYG 170
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 24/86 (27%), Positives = 42/86 (48%)
Query: 34 DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93
D TF QL + ++ + L G G VGV + + E I+++A++K G +P
Sbjct: 1 DGTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVP 60
Query: 94 LETSYPPALLESVLDDAKPSIVITKG 119
L + P +E L D+ +++T G
Sbjct: 61 LSVLFGPDAVEHRLRDSGARVLVTDG 86
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
A++++ R+ + DKIA+ DG S+T+ +L E + G L G + V +++
Sbjct: 6 AVYFLDRHLNEGRGDKIALYYDDG-SLTYGELQEEVNRWGNALRELGIERENRVLLILLD 64
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
E+ ++ K G +P+ T P L+D++ +++ E + L+
Sbjct: 65 TPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLK 117
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 22 QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
+A TPD+ A+ + + +TF +L E V L G G V +LM+ +E +
Sbjct: 11 RAFLTPDRTAIEF-EEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVI 69
Query: 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
A+ + G + L T L LDDA+ +IT ++ +L
Sbjct: 70 HALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLI 114
|
Length = 483 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A R P + A++D DG ++++++L T+ + L G G VGV+ + +
Sbjct: 45 AARWPGRTAIIDDDG-ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERT 128
A+ G +P+ T + L + L S V+ E+ +R+
Sbjct: 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGA 149
|
Length = 516 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 21/141 (14%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
I VTG + IG LV+ L+ G V + R L+ L + LD+T
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDR-------LRDGLDPLLSGVEFVVLDLTD 53
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+ V ++ + V D +++ A + ++VN+ G L N+L
Sbjct: 54 RDLVDELAKGV------PDAVIHLAAQSSVPD---SNASDPAEFLDVNVDGTL----NLL 100
Query: 837 PSMLHSRRPGHILNISSNAGV 857
+ + + SS + V
Sbjct: 101 EAARAAGVK-RFVFASSVSVV 120
|
Length = 314 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
I + G++ IG L ++L+ G +V + R RL P + V + D+ +
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVRNTKRLSK----EDQEPVA--VVEGDLRDLD 54
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFT 807
+ V+ +D++++ AG T
Sbjct: 55 SLSDAVQ-------GVDVVIHLAGAPRDT 76
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 16 HYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
M R A R PD A+VD G +T+ +L + V L +G V V+
Sbjct: 4 FEMLRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNS 63
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120
++ I+ +A+H+ G PAL+ L A+ + +I +GE
Sbjct: 64 VDAVIALLALHRLGA---------VPALMNPRLKPAEIAELIKRGE 100
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-04
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 18 MFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76
+ A R PD+ A+V D G T+++ +E D + L+ G G VG+ E
Sbjct: 21 LLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPE 80
Query: 77 WTISYIAIHKAGGGYLPLETSYPPALLESVL 107
W ++ A K G + + +Y + LE L
Sbjct: 81 WVLTQFATAKIGAILVTINPAYRLSELEYAL 111
|
Length = 559 |
| >gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
+ +TG+SSG+G K L G V+ R + E SL S + LD+
Sbjct: 6 VIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSL 65
Query: 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLME 810
+ V++ V++ +D LV NA V + T E
Sbjct: 66 DSVRQFVQQFRESGRPLDALVCNAAVYFPTAKE 98
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-04
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 36/159 (22%)
Query: 6 LSDY-DAEGAL---------HYMFRNQAKRTPDKIA--VVDH----DGRSI--TFKQLDE 47
+ D DA+G + + RN A D +A +DH G ++ T+ QL
Sbjct: 18 IEDCLDADGNIALPPGTTLISLIERNIAN-VGDTVAYRYLDHSHSAAGCAVELTWTQLGV 76
Query: 48 WTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPAL----- 102
VG L Q G V +L + +++ + A KAG +PL + P L
Sbjct: 77 RLRAVGARL-QQVAGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPL---FAPELPGHAE 132
Query: 103 -LESVLDDAKPSIVITKG-------EYMDRLERTSVPKV 133
L++ L DA+P++V+T ++ L R P+V
Sbjct: 133 RLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRV 171
|
Length = 612 |
| >gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS--IIVKKLDV 774
+ +TG++SGIG+ + G V V R R E + ++ G+ I + +D+
Sbjct: 2 RSFLITGANSGIGKAAALAIAKRGGTVHMVCRNQTRAEEARKEIETESGNQNIFLHIVDM 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVM 804
+ V + V E E + +L+NNAG M
Sbjct: 62 SDPKQVWEFVEEFKEEGKKLHVLINNAGCM 91
|
Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255 |
| >gnl|CDD|223696 COG0623, FabI, Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 21/228 (9%)
Query: 714 LANKVIFVTG--SSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
L K I + G ++ I + K L GA++ A + +RLE L GS +V
Sbjct: 4 LEGKRILIMGVANNRSIAWGIAKALAEQGAEL-AFTYQGERLEKRVEELAEELGSDLVLP 62
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DVT + + + + + G +D LV++ K +L+ ++ + +G L
Sbjct: 63 CDVTNDESIDALFATIKKKWGKLDGLVHSIA-----FAPKEELK--GDYLDTSREGFLIA 115
Query: 832 IGNI----LPSMLHSRRP-----GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQ 882
+ +I ++ + RP G IL ++ R V K +E L
Sbjct: 116 M-DISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPNYNVMGVAKAALEASVRYLAA 174
Query: 883 EVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYDISKAVPVLTTKE 929
++ I+V I AG ++T S D R ++ + + + + T E
Sbjct: 175 DLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPLRRNVTIE 222
|
Length = 259 |
| >gnl|CDD|236016 PRK07424, PRK07424, bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+L K + VTG+S +G+ L+K+L GAKVVA+ D++ +L+ + VK L
Sbjct: 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKI-----TLEINGEDLPVKTL 229
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGV 803
+ + + L +DIL+ N G+
Sbjct: 230 HWQVGQEA-----ALAELLEKVDILIINHGI 255
|
Length = 406 |
| >gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 16/160 (10%)
Query: 310 VQLNSNKLKYGNVLLTGVTGYLGIHLLQKFL-VDTKCT-LFCPVRETPNKTLLQRLED-- 365
VQ NK +L+TG TG+L ++K L V L+ +R + K+ QRL D
Sbjct: 6 VQFLENK----TILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEV 61
Query: 366 ------IMLKYHMSLDLNNY-TDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAA 418
+L+ + +LN+ ++++ V D+S + LG+K+ + + EID++++ AA
Sbjct: 62 IGKDLFKVLREKLGENLNSLISEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAA 121
Query: 419 FVNLILPYNALYKSNVLATKNLIEFS-FLNKIKSFHYVST 457
N Y+ N L N++ F+ K+K +VST
Sbjct: 122 TTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVST 161
|
Length = 491 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 20/187 (10%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
K I VTG + IG +LV+ ++ G K + V DR EN L S
Sbjct: 1 KGKTILVTGGAGSIGSELVRQILKFGPKKLIV---FDRDENKLHELVRELRSRFPHDKLR 57
Query: 775 TIENDV--KKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
I DV K+ +R E G DI+ + A + + ME E I N+ G + I
Sbjct: 58 FIIGDVRDKERLRRAFKERG-PDIVFHAAALKHVPSMEDNPEE----AIKTNVLGTKNVI 112
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ IS++ V P + V TK E + A + S K +
Sbjct: 113 D-----AAIENGVEKFVCISTDKAVNP---VNVMGATKRVAEKLLLAKNEYSSS--TKFS 162
Query: 893 CIQAGDV 899
++ G+V
Sbjct: 163 TVRFGNV 169
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN--APGSIIVKKLDV 774
KVI +TG++SGIG + + GA V+ R + R + + + LD+
Sbjct: 2 KVIIITGANSGIGFETARSFALHGAHVILACRNMSRASAAVSRILEEWHKARVEAMTLDL 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGV 803
V++ A+ + +LV NA V
Sbjct: 62 ASLRSVQRFAEAFKAKNSPLHVLVCNAAV 90
|
Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 37/207 (17%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDL-NNY 379
NVL+TG G++G HL ++ L + VR +LD+ N++
Sbjct: 1 NVLVTGADGFIGSHLTERLLREG-----HEVR--------------------ALDIYNSF 35
Query: 380 TDRLIL---VKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNA---LYKSN 433
+L V +++ E L + D++ H AA + + Y A ++N
Sbjct: 36 NSWGLLDNAVHDRFHFISGDVRDASEVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETN 95
Query: 434 VLATKNLIEFSFLNKIKSFHYVSTDSIY-PSTSENFQEDYTVADFDDFMTTTSGYGQSKI 492
V T N++E + + K + ST +Y + ED+ + + S Y SK
Sbjct: 96 VFGTLNVLEAACVLYRKRVVHTSTSEVYGTAQDVPIDEDHPLLYIN---KPRSPYSASKQ 152
Query: 493 VSEYLVLN-AGQMGLPVSIVRCGNIGG 518
++ L + GLPV+I+R N G
Sbjct: 153 GADRLAYSYGRSFGLPVTIIRPFNTYG 179
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|131732 TIGR02685, pter_reduc_Leis, pteridine reductase | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 31/245 (12%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVT 775
VTG++ IG + L G +VV R + + NA P S + + D++
Sbjct: 3 AAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLS 62
Query: 776 IENDV----KKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+ + ++ G D+LVNNA Y T + + E V
Sbjct: 63 NSATLFSRCEAIIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAEL 122
Query: 832 IGN--ILPSML----HSRRPG----------HILNISSNAGVRPFAGLAVYTGTKYFIEG 875
G+ I P L R+ G I+N+ +P G +YT K+ +EG
Sbjct: 123 FGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDAMTDQPLLGFTMYTMAKHALEG 182
Query: 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV----LTTKEIS 931
++ + E++ I+V + G LL + +V + Y + VP+ + ++I+
Sbjct: 183 LTRSAALELAPLQIRVNGVAPG---LSLLPDAMPFEVQEDY--RRKVPLGQREASAEQIA 237
Query: 932 QSIIF 936
+IF
Sbjct: 238 DVVIF 242
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. Length = 267 |
| >gnl|CDD|236173 PRK08177, PRK08177, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+ + G+S G+G LV L+ G +V A R + L+ A + ++KLD+
Sbjct: 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ-----ALPGVHIEKLDM- 54
Query: 776 IENDVKKVVREVLAELGH-IDILVNNAGVM 804
ND + + + G D+L NAG+
Sbjct: 55 --NDPASLDQLLQRLQGQRFDLLFVNAGIS 82
|
Length = 225 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
V+ V G++ IG +V L G++V+ R L + G ++ + D+
Sbjct: 1 MVVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCEAYARRLL--VMGDLGQVLFVEFDLRD 58
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMY 805
+ ++K + D+++N G +Y
Sbjct: 59 DESIRKALE-------GSDVVINLVGRLY 80
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 45/208 (21%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLD--LNN 378
VL+TG G++G HL+++ LL+R ++++ LD
Sbjct: 1 RVLVTGGAGFIGSHLVER--------------------LLERGHEVIV-----LDNLSTG 35
Query: 379 YTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLI------LPYNALYKS 432
+ L VK ++ +++ + +D + H AA ++ + +
Sbjct: 36 KKENLPEVKPNVKFIEGDIRDDELVEFAFEGVDYVFHQAAQASVPRSIEDPIKDHE---V 92
Query: 433 NVLATKNLIEFSFLNKIKSFHYVSTDS-IYPSTSENFQEDYTVADFDDFMTTTSGYGQSK 491
NVL T NL+E + +K F Y S+ S ED+ S Y SK
Sbjct: 93 NVLGTLNLLEAARKAGVKRFVYASSSSVYGDPPYLPKDEDHPPN-------PLSPYAVSK 145
Query: 492 IVSE-YLVLNAGQMGLPVSIVRCGNIGG 518
E Y + A GLP +R N+ G
Sbjct: 146 YAGELYCQVFARLYGLPTVSLRYFNVYG 173
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 23 AKRTPDKIAVV--DHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
A PDK+A++ D DG + TF L ++++ + G G TV + ++R E+
Sbjct: 27 ADEEPDKLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFW 86
Query: 79 ISYIAIHKAGGGYLP 93
S +A+HK G +P
Sbjct: 87 FSMLALHKIGAIAIP 101
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 20/87 (22%), Positives = 40/87 (45%)
Query: 40 ITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99
++++L E + L + G G V L+ R E ++ + K G Y PL +++
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 100 PALLESVLDDAKPSIVITKGEYMDRLE 126
P + L+ + ++IT E +R +
Sbjct: 61 PEPIRDRLELGEAKVLITTPELYERTD 87
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|180669 PRK06720, PRK06720, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTS--LQNAPGSIIVKK 771
LA KV VTG GIG L GAKV+ ID+ T + N G +
Sbjct: 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVT--DIDQESGQATVEEITNLGGEALFVS 71
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGV 803
D+ + D ++V+ L ID+L NAG+
Sbjct: 72 YDMEKQGDWQRVISITLNAFSRIDMLFQNAGL 103
|
Length = 169 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 27/118 (22%)
Query: 409 EIDMIIHAAAFVNL-ILPYNAL--YKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS 465
+D ++HAAA + YN ++N+ +N+I+ + N +K +STD +
Sbjct: 74 GVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDK--AANP 131
Query: 466 ENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGS 519
N YG +K+ S+ L + A G G S+VR GN+ GS
Sbjct: 132 INL------------------YGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGS 171
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 35/139 (25%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+ + VTG+ G+G ++ LGAKV+AV + + I+ K D
Sbjct: 163 GETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAK------------IVSKYADYV 210
Query: 776 IEN-----DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
I +VKK +G DI++ G LEE ++ ++N+ G +
Sbjct: 211 IVGSKFSEEVKK--------IGGADIVIETVG--------TPTLEE--SLRSLNMGGKII 252
Query: 831 CIGNILPSMLHSRRPGHIL 849
IGN+ PS +S R G+I+
Sbjct: 253 QIGNVDPSPTYSLRLGYII 271
|
Length = 334 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+R PD+ ++D G ++T+++LDE +D + L VG++ + + +
Sbjct: 53 AQRCPDRPGLIDELG-TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALL 111
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
A ++ G L L TS+ L V+ VI E+ ++R
Sbjct: 112 AANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDR 156
|
Length = 537 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 44/197 (22%), Positives = 69/197 (35%), Gaps = 58/197 (29%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
+L+TG G LG L+Q+ R T LDL
Sbjct: 2 ILITGANGQLGRELVQQLS--------PEGRVVVALT------------RSQLDL----- 36
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNL----ILPYNALYKSNVLAT 437
+D L+ D +++ AA+ ++ P A + N LA
Sbjct: 37 ------TDPEALERLLRAIRP--------DAVVNTAAYTDVDGAESDPEKA-FAVNALAP 81
Query: 438 KNLIEFSFLNKIKS-FHYVSTDSIYP-STSENFQEDYTVADFDDFMTTTSGYGQSKIVSE 495
+NL + + + ++STD ++ ++ED D + YGQSK+ E
Sbjct: 82 QNLARAA--ARHGARLVHISTDYVFDGEGKRPYRED-------DATNPLNVYGQSKLAGE 132
Query: 496 YLVLNAGQMGLPVSIVR 512
V AG L IVR
Sbjct: 133 QAVRAAGPNAL---IVR 146
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 44/195 (22%), Positives = 76/195 (38%), Gaps = 36/195 (18%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
VL+TG TG++G ++ + L++ + VR T ++ L+ L + + + D
Sbjct: 3 VLVTGATGFVGSAVV-RLLLEQGEEVRVLVRPTSDRRNLEGL-------DVEIVEGDLRD 54
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILP-YNALYKSNVLATKNL 440
+ L + G + + H AA L P +Y +NV T+NL
Sbjct: 55 P-----ASLRKAVAGCRA-------------LFHVAADYRLWAPDPEEMYAANVEGTRNL 96
Query: 441 IEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFD---DFMTTTSGYGQSKIVSEYL 497
+ + ++ Y S+ + + D T AD Y +SK ++E
Sbjct: 97 LRAALEAGVERVVYTSSVATL-----GVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQA 151
Query: 498 VLNAGQ-MGLPVSIV 511
L GLPV IV
Sbjct: 152 ALEMAAEKGLPVVIV 166
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 23 AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82
A+ PD +A++D + R ++ +L D + +L QG G V V + C+EW + ++
Sbjct: 20 ARARPDAVALID-EDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFL 78
Query: 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVI 116
A + G + + T Y + +L + ++
Sbjct: 79 ACARLGATVIAVNTRYRSHEVAHILGRGRARWLV 112
|
Length = 540 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 410 IDMIIHAAAFV---NLILPYNA-LYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS 465
+D + H AA + I +A + +N L N++E + +N ++ F + S+ +YP
Sbjct: 65 VDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASSACVYP--- 121
Query: 466 ENFQEDYTVADFDD----FMTTTSGYGQSKIVSEYLVLN-AGQMGLPVSIVRCGNIGGSL 520
E Q + TV + YG K+ +E L + G+ IVR NI G
Sbjct: 122 EFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIETRIVRFHNIYGPR 181
Query: 521 E 521
Sbjct: 182 G 182
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 20/142 (14%)
Query: 397 LKNQDEYVSLSYEIDMIIHAAAFVNLILPYNA---LYKSNVLATKNLIEFSFLNKIKS-F 452
++N+++ L +ID+IIH AA ++ ++ +++N L T N++E + + + F
Sbjct: 61 IRNRNDLEDLFEDIDLIIHTAAQPSVTTSASSPRLDFETNALGTLNVLEAARQHAPNAPF 120
Query: 453 HYVSTDSIYPST--SENFQED---YTVAD-------FDDFMTTT---SGYGQSKIVSEYL 497
+ ST+ +Y +E Y +A + S YG SK ++
Sbjct: 121 IFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESFPLDFSHSLYGASKGAADQY 180
Query: 498 VLNAGQM-GLPVSIVRCGNIGG 518
V G++ GL + RCG + G
Sbjct: 181 VQEYGRIFGLKTVVFRCGCLTG 202
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 37 GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLET 96
G++IT+ +LDE + + +L ++G G+ V ++M L++ ++ A+ +AG + +
Sbjct: 46 GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNP 105
Query: 97 SYPPALLESVLDDA 110
Y P LE L D+
Sbjct: 106 LYTPRELEHQLKDS 119
|
Length = 557 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 403 YVSLSYEIDMIIHAAA-------FVNLILPYNALYKSNVLATKNLIE-FSFLNKIKSFHY 454
Y+ ++ ID I+H AA F N K+N+ T L+E +I+ F +
Sbjct: 74 YLLITEGIDTIMHFAAQTHVDNSFGNSF----EFTKNNIYGTHVLLEACKVTGQIRRFIH 129
Query: 455 VSTDSIYPSTSENFQEDYTVADFD-DFMTTTSGYGQSKIVSEYLVLNAGQ-MGLPVSIVR 512
VSTD +Y T ED V + + + T+ Y +K +E LV+ G+ GLPV R
Sbjct: 130 VSTDEVYGETD----EDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR 185
Query: 513 CGNIGGSLEF 522
N+ G +F
Sbjct: 186 GNNVYGPNQF 195
|
Length = 668 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 19 FRNQAKRTPDKIAVV-DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
F R PD+ A+V H T++QL + D + L+ G G VG+ C EW
Sbjct: 24 FDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEW 83
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117
++ A + G + + +Y + LE L + VI
Sbjct: 84 LLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVIC 123
|
Length = 558 |
| >gnl|CDD|236229 PRK08303, PRK08303, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-------RIDRLENLKTS---LQ 761
L KV V G++ G G + +L GA V R DR E ++ + +
Sbjct: 4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVT 63
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNN 800
A G I ++D + V+ +V + E G +DILVN+
Sbjct: 64 AAGGRGIAVQVDHLVPEQVRALVERIDREQGRLDILVND 102
|
Length = 305 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 958 | |||
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 100.0 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 100.0 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 100.0 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| KOG1200|consensus | 256 | 100.0 | ||
| KOG1205|consensus | 282 | 100.0 | ||
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 100.0 | |
| KOG1201|consensus | 300 | 100.0 | ||
| KOG0725|consensus | 270 | 100.0 | ||
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 100.0 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 100.0 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 100.0 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 100.0 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 100.0 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 100.0 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 100.0 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 100.0 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 100.0 | |
| KOG1207|consensus | 245 | 100.0 | ||
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 100.0 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08643 | 256 | acetoin reductase; Validated | 100.0 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 100.0 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 100.0 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 100.0 | |
| KOG4169|consensus | 261 | 100.0 | ||
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 100.0 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 100.0 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 100.0 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 100.0 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 100.0 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 100.0 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 100.0 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 100.0 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 100.0 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.98 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.98 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.98 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.98 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.97 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.97 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.97 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.97 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.97 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.97 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.97 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.97 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.97 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.97 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.97 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.97 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.97 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.97 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.97 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.97 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.97 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.97 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.97 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.97 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.97 | |
| KOG1209|consensus | 289 | 99.97 | ||
| PRK12742 | 237 | oxidoreductase; Provisional | 99.97 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.97 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.97 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.97 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.97 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.97 | |
| KOG1610|consensus | 322 | 99.97 | ||
| KOG1014|consensus | 312 | 99.97 | ||
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.96 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.96 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.96 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.96 | |
| KOG1208|consensus | 314 | 99.96 | ||
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.96 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.96 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.96 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.96 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.96 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.96 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1210|consensus | 331 | 99.96 | ||
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.96 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1199|consensus | 260 | 99.96 | ||
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.96 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.96 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.96 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.96 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.96 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.96 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1611|consensus | 249 | 99.96 | ||
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.95 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.95 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 99.95 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.95 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.95 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.95 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.95 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.95 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.95 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.95 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.95 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.95 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.94 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.94 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.94 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 99.94 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.94 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 99.94 | |
| KOG1221|consensus | 467 | 99.94 | ||
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.94 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.94 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.94 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.94 | |
| KOG0747|consensus | 331 | 99.94 | ||
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.94 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.94 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.94 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.94 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.93 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 99.93 | |
| KOG1502|consensus | 327 | 99.93 | ||
| PRK05691 | 4334 | peptide synthase; Validated | 99.93 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.93 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.93 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.93 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.93 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.93 | |
| KOG1204|consensus | 253 | 99.93 | ||
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.93 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 99.93 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.93 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.93 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.93 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.92 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.92 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.92 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.92 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.92 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.92 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.92 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.92 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.92 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.91 | |
| KOG1429|consensus | 350 | 99.91 | ||
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.91 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.91 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.91 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.91 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.91 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.91 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.91 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.91 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.9 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.9 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.9 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.9 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.89 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 99.89 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.88 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.88 | |
| KOG1178|consensus | 1032 | 99.88 | ||
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.88 | |
| KOG1430|consensus | 361 | 99.87 | ||
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.87 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.86 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.86 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.85 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.85 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.85 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.85 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.84 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.84 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.83 | |
| KOG1371|consensus | 343 | 99.83 | ||
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.83 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.82 | |
| KOG1478|consensus | 341 | 99.82 | ||
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.8 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.79 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.78 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.75 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.75 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.75 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.74 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.71 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.7 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.67 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.67 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.66 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.64 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.63 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.62 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.62 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.61 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.61 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.59 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 99.58 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.58 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.58 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.58 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.58 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.58 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.57 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.57 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 99.57 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 99.56 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 99.56 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 99.55 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.55 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.55 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 99.55 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 99.55 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.55 | |
| KOG2865|consensus | 391 | 99.54 | ||
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 99.54 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.54 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 99.54 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 99.54 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 99.53 | |
| PLN02654 | 666 | acetate-CoA ligase | 99.52 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.52 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.52 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.52 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 99.52 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.52 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 99.51 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 99.51 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 99.51 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.51 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.5 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 99.5 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.5 | |
| KOG1179|consensus | 649 | 99.5 | ||
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 99.5 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 99.49 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.49 | |
| KOG1177|consensus | 596 | 99.49 | ||
| PRK07529 | 632 | AMP-binding domain protein; Validated | 99.49 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 99.49 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 99.49 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.49 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 99.49 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 99.49 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.49 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 99.49 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 99.48 | |
| PRK09274 | 552 | peptide synthase; Provisional | 99.48 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.48 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 99.48 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.47 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 99.47 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 99.47 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 99.47 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 99.47 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.47 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 99.47 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 99.47 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 99.46 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.46 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 99.46 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.46 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 99.45 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.45 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.45 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 99.45 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 99.45 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 99.44 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.44 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.44 | |
| PLN02479 | 567 | acetate-CoA ligase | 99.44 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 99.44 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.44 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 99.43 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.43 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 99.43 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.43 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.43 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.43 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 99.43 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.43 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 99.42 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 99.42 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.42 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.42 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 99.41 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.41 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 99.41 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 99.41 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 99.41 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 99.41 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 99.41 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 99.41 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.41 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 99.41 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 99.41 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 99.41 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 99.4 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 99.4 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.4 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 99.4 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.4 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 99.4 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 99.4 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 99.39 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.39 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 99.39 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.39 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.39 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 99.39 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 99.39 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.39 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 99.38 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 99.38 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 99.38 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 99.38 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.38 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.38 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.38 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 99.38 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.38 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 99.38 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 99.37 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.37 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 99.37 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.37 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.37 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 99.37 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 99.37 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.36 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 99.36 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.36 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.36 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 99.36 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.36 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 99.35 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.35 | |
| KOG1431|consensus | 315 | 99.35 | ||
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.34 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 99.34 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.34 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 99.34 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.34 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.33 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.33 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.33 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.33 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.33 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.32 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.32 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.32 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.32 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.32 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 99.32 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.31 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.31 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.31 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 99.31 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.3 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 99.3 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.3 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.3 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.3 | |
| KOG1502|consensus | 327 | 99.3 | ||
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.3 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.29 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 99.29 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.29 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.28 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.28 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.28 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.28 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.28 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.28 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.27 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.27 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.27 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.27 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.27 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.27 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.26 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.26 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.26 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.25 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.25 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.25 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.25 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.25 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.24 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.24 |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=688.85 Aligned_cols=503 Identities=26% Similarity=0.418 Sum_probs=391.3
Q ss_pred cccCCCCCccccccCCCCCccccc---------cccCCCCCHHHHHHHHHHHHHcCCC--CCCCCCchhhcCccHHHHHH
Q psy4557 172 HLSILKSSGKLNKEELPKLDSIAQ---------IELDESMFQSQKNIAKIWCKILNLY--TLDKDENFFEIGGHSLTAAL 240 (958)
Q Consensus 172 ~lP~~t~nGKvDr~~L~~~~~~~~---------~~~~~~~~~~e~~l~~iw~~vL~~~--~i~~~~~FF~lGgdSL~a~~ 240 (958)
+||+| +||||||++|+.+..... .....+.+..|+.+.++|+++|+.+ .++.++|||++|||||++++
T Consensus 808 ~lP~t-~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~i~~~~~ff~lGgdSL~a~~ 886 (1389)
T TIGR03443 808 KLPLN-PNGKVDKPALPFPDTAQLAAVAKNRSASAADEEFTETEREIRDLWLELLPNRPATISPDDSFFDLGGHSILATR 886 (1389)
T ss_pred cCCCC-CCccccHhhcCCCchhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCccccCcCcchhhcCccHHHHHH
Confidence 68985 899999999986532210 1123456789999999999999974 59999999999999999999
Q ss_pred HHHHHHHHhCCCCChHHHhcCCcHHHHHHHHhcccccccccc-cchhhchhhhhhhhhhhhhh-------hhhhhhhccc
Q psy4557 241 CISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNETLKLD-LIHEIDVNSYKSLDENLNVR-------VQCFWKSVQL 312 (958)
Q Consensus 241 l~~~i~~~~~~~l~~~~l~~~pTi~~la~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~ 312 (958)
|+++|++.+|+.+++.++|++||+++||++|........... ......... ......+..+ +...+.....
T Consensus 887 l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~ 965 (1389)
T TIGR03443 887 MIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLKKGEELADEGDSEIEEEE-TVLELDYAKDAKTLVDSLPKSYPSRKE 965 (1389)
T ss_pred HHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhhcccccccccccccchhc-ccccchhhhhhhhhhhcccccCCcccc
Confidence 999999999999999999999999999999975432210000 000000000 0000011111 1100000000
Q ss_pred ccCccccCceEEeccccchHHHHHHHHhcCC---CCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEeccc
Q psy4557 313 NSNKLKYGNVLLTGVTGYLGIHLLQKFLVDT---KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSD 389 (958)
Q Consensus 313 ~~~~~~~~~VllTGaTGflGs~ll~~LL~~~---~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gD 389 (958)
. .....++|||||||||||+||+++|++++ ..+|+|++|..+.....+|+.+.+..|+.+. ..+.++++++.||
T Consensus 966 ~-~~~~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~--~~~~~~i~~~~gD 1042 (1389)
T TIGR03443 966 L-DASTPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWD--EEWASRIEVVLGD 1042 (1389)
T ss_pred c-ccCCCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCc--hhhhcceEEEecc
Confidence 0 01135789999999999999999999875 4789999998887778889988888887764 2345689999999
Q ss_pred CCCCCCCCCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC----
Q psy4557 390 LSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS---- 465 (958)
Q Consensus 390 l~~~~lGL~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~---- 465 (958)
++++.|||++ +.|..+..++|+|||+||.+++..+|+.++.+||.||.+++++|...+.++|||+||.+||+...
T Consensus 1043 l~~~~lgl~~-~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~ 1121 (1389)
T TIGR03443 1043 LSKEKFGLSD-EKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNL 1121 (1389)
T ss_pred CCCccCCcCH-HHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccch
Confidence 9999999975 78999999999999999999999999999889999999999999988889999999999996421
Q ss_pred ---------CCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 466 ---------ENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 466 ---------~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
..+.++.... .......+||++|||++|+++..+.+.|++++|+|||+|+|++.+|.|+..++++.+++
T Consensus 1122 ~~~~~~~~~~~~~e~~~~~--~~~~~~~~~Y~~sK~~aE~l~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~ 1199 (1389)
T TIGR03443 1122 SDELVQAGGAGIPESDDLM--GSSKGLGTGYGQSKWVAEYIIREAGKRGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLK 1199 (1389)
T ss_pred hhhhhhccCCCCCcccccc--cccccCCCChHHHHHHHHHHHHHHHhCCCCEEEECCCccccCCCcCCCCchhHHHHHHH
Confidence 1122221111 11223467999999999999998877899999999999999999999999999999999
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHh
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLN 614 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~ 614 (958)
++..+|.+|+....++|+|||+++++++.++.... ..+.+||+.|+..++|.++++.+++.|++++.+++.+|..++.
T Consensus 1200 ~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~w~~~l~ 1279 (1389)
T TIGR03443 1200 GCIQLGLIPNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTYGYDVEIVDYVHWRKSLE 1279 (1389)
T ss_pred HHHHhCCcCCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 99999999998888999999999999999986543 2456899999999999999999998899999999999999753
Q ss_pred cc----CCCch---hHHHHhhccccccccCcccccHHHHHHHh----hCCCCCC---CCCHHHHHHHHHHHHHCCCCCCC
Q psy4557 615 KR----ELSEP---LIQILRNKGKEYLTVNNSYCQRNTLALLK----SCDETYP---ETNDHTVRQFLDNLRNSNLLPNV 680 (958)
Q Consensus 615 ~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~t~~~L~----~~~~~~p---~~~~~~~~~~~~~~~~~g~l~~~ 680 (958)
.. ...++ +++++...... ......+|+.+|++.|+ ..++++| ++++++|++|++||+++|||++|
T Consensus 1280 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1358 (1389)
T TIGR03443 1280 RFVIERSEDNALFPLLHFVLDDLPQ-STKAPELDDTNAATSLKADAAWTGVDVSSGAGVTEEQIGIYIAYLVKVGFLPAP 1358 (1389)
T ss_pred HhccccCccchhhhHHHHhhccCcc-cccCCCCCCHHHHHHHHhhcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCCCC
Confidence 21 12222 34444332221 12457789999999998 6778888 69999999999999999999987
Q ss_pred CCC
Q psy4557 681 PLE 683 (958)
Q Consensus 681 ~~~ 683 (958)
+..
T Consensus 1359 ~~~ 1361 (1389)
T TIGR03443 1359 TKT 1361 (1389)
T ss_pred CCC
Confidence 774
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=604.70 Aligned_cols=564 Identities=24% Similarity=0.345 Sum_probs=432.1
Q ss_pred ceEEeccccchHHHHHHHHhc-CCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLV-DTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~-~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+|||||||||||+||+++|+. ..+.+|+|++|.... .++......++ .++++++.||+..+.+|+..
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~----~~~~~~~~~~~--------~~~v~~~~~Dl~~~~~~~~~ 69 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL----SRLEALAAYWG--------ADRVVPLVGDLTEPGLGLSE 69 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH----HHHHHHHHhcC--------CCcEEEEecccCCccCCcCH
Confidence 699999999999999999996 345789999995432 22222221110 15789999999999999875
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDD 479 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~ 479 (958)
+.+..+ .++|+||||||.+++..++..+.++||.||.+++++|.+.++++|+|+||.+|||.......|+.. +.
T Consensus 70 -~~~~~l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~~~~e~~~----~~ 143 (657)
T PRK07201 70 -ADIAEL-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEGVFREDDF----DE 143 (657)
T ss_pred -HHHHHh-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccCccccccc----hh
Confidence 566666 899999999999988888888899999999999999998888999999999999864333333211 11
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCC-------CCCcCC
Q psy4557 480 FMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPD-------IDWYLE 552 (958)
Q Consensus 480 ~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~-------~~~~~~ 552 (958)
...+.++|++||+.+|+++.. ..|++++|+||++|||+..+|..+..+..+.+...+..++..|. .....+
T Consensus 144 ~~~~~~~Y~~sK~~~E~~~~~--~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (657)
T PRK07201 144 GQGLPTPYHRTKFEAEKLVRE--ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTN 221 (657)
T ss_pred hcCCCCchHHHHHHHHHHHHH--cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeee
Confidence 123457899999999999975 35899999999999999876643221111222222222233221 123578
Q ss_pred cccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCc-----cccChHHHHHHHhccCCCchhHHHH
Q psy4557 553 FTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNI-----KTVPYEKWFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 553 ~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~-----~~v~~~eW~~~~~~~~~~~~~~~~~ 626 (958)
++|||+++++++.+...+...+++||++++.++++.|+++.+.+. |.+. ..+|...|................+
T Consensus 222 ~v~vddva~ai~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 301 (657)
T PRK07201 222 IVPVDYVADALDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNAV 301 (657)
T ss_pred eeeHHHHHHHHHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHHHH
Confidence 999999999999988765556789999999999999999998764 6654 3444433322221011000011111
Q ss_pred hh--c----cccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCcccccccccccc
Q psy4557 627 RN--K----GKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVPLENNNSTEYTDTNKQGISI 700 (958)
Q Consensus 627 ~~--~----~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 700 (958)
.. + .-.+......||++++++.|++.|+.||+++ +++.++++||.+. +.+...
T Consensus 302 ~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p~~~-~~~~~~~~~~~~~--~~~~~~------------------ 360 (657)
T PRK07201 302 ATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVPRLA-SYAPRLWDYWERH--LDPDRA------------------ 360 (657)
T ss_pred HHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCCChH-HHHHHHHHHHHhc--CChhhh------------------
Confidence 10 0 1113344578999999999999999999997 6779999999864 221110
Q ss_pred CCCcccccccCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHH
Q psy4557 701 SNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDV 780 (958)
Q Consensus 701 ~~~~~~~~~~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v 780 (958)
........++||+++|||||+|||+++|++|+++|++|++++|+.+.++++.+++...+.++.++.+|+++.+++
T Consensus 361 -----~~~~~~~~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 435 (657)
T PRK07201 361 -----RRRDLRGPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAV 435 (657)
T ss_pred -----cccCcccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 011234567899999999999999999999999999999999999999988888876667788999999999999
Q ss_pred HHHHHHHHHHcCCccEEEEccccCCCccccCC--CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC
Q psy4557 781 KKVVREVLAELGHIDILVNNAGVMYFTLMEKY--KLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR 858 (958)
Q Consensus 781 ~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~--~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~ 858 (958)
+++++++.+.+|++|++|||||+.....+.+. +.++|++++++|+.|++.+++.++|.|.+ ++.|+||++||.++..
T Consensus 436 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~ 514 (657)
T PRK07201 436 DHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRE-RRFGHVVNVSSIGVQT 514 (657)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCEEEEECChhhcC
Confidence 99999999999999999999998654444332 35889999999999999999999999974 4468999999999999
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHh
Q psy4557 859 PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 859 ~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l 938 (958)
+.++.+.|++||+|+++|+++++.|++++||+||+|+||+|+|+|...... + ...+..+|+++|+.++..+
T Consensus 515 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~~------~---~~~~~~~~~~~a~~i~~~~ 585 (657)
T PRK07201 515 NAPRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTKR------Y---NNVPTISPEEAADMVVRAI 585 (657)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcccc------c---cCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998653210 1 1234679999999999976
Q ss_pred cC
Q psy4557 939 LQ 940 (958)
Q Consensus 939 ~~ 940 (958)
..
T Consensus 586 ~~ 587 (657)
T PRK07201 586 VE 587 (657)
T ss_pred Hh
Confidence 54
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-56 Score=476.62 Aligned_cols=351 Identities=30% Similarity=0.429 Sum_probs=282.0
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||+||+++||.+...+||||||+++++.+++||++++..|..|. +.+.+||+++.||+++|.|||++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~--e~~~~ri~vv~gDl~e~~lGL~~ 78 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWD--ELSADRVEVVAGDLAEPDLGLSE 78 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhh--hhhcceEEEEecccccccCCCCH
Confidence 3799999999999999999999988999999999999999999999999888776 45679999999999999999986
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCccccc--ccC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQEDYT--VAD 476 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~~~--~~~ 476 (958)
..|..|+++||+|||+||.|||..||++++.+||.||.+++++|..++.|+||||||++|+.... ....++.. .+.
T Consensus 79 -~~~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~ 157 (382)
T COG3320 79 -RTWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPT 157 (382)
T ss_pred -HHHHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999986432 11222111 122
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccH
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPV 556 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pV 556 (958)
......+.+||++|||+||+++++|..+|+|++|+|||.|.|++.+|.+|..||+++|+++|.++|.+|+.+..++++||
T Consensus 158 ~~~~~~~~~GY~~SKwvaE~Lvr~A~~rGLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P~~~~~~~~~p~ 237 (382)
T COG3320 158 RNVGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAPDSEYSLDMLPV 237 (382)
T ss_pred ccccCccCCCcchhHHHHHHHHHHHhhcCCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCCCcccchhhCcc
Confidence 22334567899999999999999999999999999999999999999999999999999999999999999988999998
Q ss_pred HHHHHHHHHHhcCcC-----------CCCceEE-ecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHh-------ccC
Q psy4557 557 DFLTKSLVQLTTNVN-----------NANKIYN-FINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLN-------KRE 617 (958)
Q Consensus 557 D~va~aiv~l~~~~~-----------~~~~v~h-~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~-------~~~ 617 (958)
|.++++++..+.... .....|| ...|..+...++.+|+.. .+...+.+|...+. .+.
T Consensus 238 ~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~----~~~a~~~~~~~~~~~~~~~l~~r~ 313 (382)
T COG3320 238 DHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS----LDIAGYPEWLMVLDNSAPALDERQ 313 (382)
T ss_pred ceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh----hhccCCchhhhhccchhhhccccc
Confidence 888877766554321 1223444 223777888999999876 34555556655432 111
Q ss_pred CCchhHHHH--h-----hccccccccCcccccHHHHHHHhhCCCCCC--CCCHHHHHHHHHHHHHCCCC
Q psy4557 618 LSEPLIQIL--R-----NKGKEYLTVNNSYCQRNTLALLKSCDETYP--ETNDHTVRQFLDNLRNSNLL 677 (958)
Q Consensus 618 ~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p--~~~~~~~~~~~~~~~~~g~l 677 (958)
...++.+.+ . .+..........+.+..|.-.+...++.++ .++...+.+|++.+...|++
T Consensus 314 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~a~~~~y~a~l~~~g~~ 382 (382)
T COG3320 314 RRASLLPLLAWTNVDLTAPAFPLKGSMPPTLSFRTAVALAGTGITKDEPALDAALLIKYIANLGLLGLL 382 (382)
T ss_pred ccCcccchhhhhccCccccccccccccCchHHHHHHHHhccCCCCCCccccchhHHHHHHhccccccCC
Confidence 111222221 1 111113345667788888888888898887 99999999999988777753
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=377.13 Aligned_cols=242 Identities=39% Similarity=0.596 Sum_probs=219.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|+++|||||||||.++|++|+++|++|++++|+.++|+++++++.+ +++.++.+||+|.++++++++.+.+.||
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~--~~~~~~~~DVtD~~~~~~~i~~~~~~~g 80 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA--GAALALALDVTDRAAVEAAIEALPEEFG 80 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc--CceEEEeeccCCHHHHHHHHHHHHHhhC
Confidence 46789999999999999999999999999999999999999999999875 6788999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+||+||||||.+...++.+.+.++|++|+++|++|.++.+++++|.|.+ ++.|+|||+||++|..++|+.++||+||++
T Consensus 81 ~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~-r~~G~IiN~~SiAG~~~y~~~~vY~ATK~a 159 (246)
T COG4221 81 RIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVE-RKSGHIINLGSIAGRYPYPGGAVYGATKAA 159 (246)
T ss_pred cccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHh-cCCceEEEeccccccccCCCCccchhhHHH
Confidence 9999999999998899999999999999999999999999999999984 456899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
+.+|++.|++|+..++|||.+|+||.+.|..+.....+......+ .......++|++||+++.|.+.+|.+..|+++.|
T Consensus 160 V~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~~~~~l~p~dIA~~V~~~~~~P~~vnI~ei~i 239 (246)
T COG4221 160 VRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVYKGGTALTPEDIAEAVLFAATQPQHVNINEIEI 239 (246)
T ss_pred HHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHhccCCCCCHHHHHHHHHHHHhCCCccccceEEE
Confidence 999999999999999999999999999877655433221111111 1234567899999999999999999999999999
Q ss_pred cCCCCC
Q psy4557 952 EPPLAS 957 (958)
Q Consensus 952 ~p~~~~ 957 (958)
.|+.|.
T Consensus 240 ~P~~Q~ 245 (246)
T COG4221 240 MPTNQA 245 (246)
T ss_pred eecCCC
Confidence 999875
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=402.52 Aligned_cols=353 Identities=29% Similarity=0.483 Sum_probs=289.7
Q ss_pred ceEEeccccchHHHHHHHHhcCCC-CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTK-CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+|||||||||||+||+++|++++. .+|+|++|..+...+.+|+.+.+..+.++..... .++++++.||++++.+||++
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~gl~~ 79 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLA-RERIEVVAGDLSEPRLGLSD 79 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhh-hCCEEEEeCCcCcccCCcCH
Confidence 589999999999999999998743 6899999998877778888887777665431111 16899999999999999975
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCC-CcccccccCcC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDYTVADFD 478 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~-~~e~~~~~~~~ 478 (958)
+.+..+..++|+|||+||.+++..+|+.+.+.|+.|+.+++++|...+.++|+|+||.++|+..... ..++.+.. .
T Consensus 80 -~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~--~ 156 (367)
T TIGR01746 80 -AEWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIV--T 156 (367)
T ss_pred -HHHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCcccccccc--c
Confidence 6788889999999999999999999999999999999999999998888889999999999753221 12221111 1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCC-cCCcccHH
Q psy4557 479 DFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDW-YLEFTPVD 557 (958)
Q Consensus 479 ~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~-~~~~~pVD 557 (958)
......++|++|||++|+++..+.+.|++++|+|||+++|++.+|.++..+++.++++.+...|.+|.... ..+|+|||
T Consensus 157 ~~~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~vd 236 (367)
T TIGR01746 157 PPPGLAGGYAQSKWVAELLVREASDRGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYPDSPELTEDLTPVD 236 (367)
T ss_pred cccccCCChHHHHHHHHHHHHHHHhcCCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCCCCCccccCcccHH
Confidence 11234579999999999999988777999999999999999888999988999999999999999998764 67899999
Q ss_pred HHHHHHHHHhcCcCC--CCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccC------CCchhHHHHhhc
Q psy4557 558 FLTKSLVQLTTNVNN--ANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRE------LSEPLIQILRNK 629 (958)
Q Consensus 558 ~va~aiv~l~~~~~~--~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~------~~~~~~~~~~~~ 629 (958)
+++++++.++..... .+.+||+.+|++++|.++++.+.+.|++++.+++.+|+..+.... ...+++.++...
T Consensus 237 dva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~~g~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (367)
T TIGR01746 237 YVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLERAGYNLKLVSFDEWLQRLEDSDTAKRDPPRYPLLPLLHFL 316 (367)
T ss_pred HHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhhhcCCCcccccchhhhhcc
Confidence 999999998866543 278999999999999999999988899999999999999754311 112344444321
Q ss_pred ---cccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy4557 630 ---GKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLL 677 (958)
Q Consensus 630 ---~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l 677 (958)
..........|++.+|++.|+..++.||++|.+++++|++||.+.||+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (367)
T TIGR01746 317 GAGFEEPEFDTRNLDSRSTAEALEGDGIREPSITAPLLHLYLQYLKEIGFL 367 (367)
T ss_pred CCCcccccccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 111112346799999999999999999999999999999999999996
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=399.39 Aligned_cols=239 Identities=38% Similarity=0.593 Sum_probs=171.5
Q ss_pred EeccccchHHHHHHHHhcCCC-CeEEEeccCCChhhHHHHHHHHHHHhcccccc-ccccCceEEecccCCCCCCCCCcHH
Q psy4557 324 LTGVTGYLGIHLLQKFLVDTK-CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDL-NNYTDRLILVKSDLSLEMLGLKNQD 401 (958)
Q Consensus 324 lTGaTGflGs~ll~~LL~~~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~ri~~v~gDl~~~~lGL~~~~ 401 (958)
|||||||||+|||++||+++. .+||||+|..+...+.+|+.+.+..++++... ....+||+++.|||++++|||++ +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~-~ 79 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSD-E 79 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--H-H
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCCh-H
Confidence 799999999999999998875 49999999999889999999888877766422 12368999999999999999986 8
Q ss_pred HHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCccc---ccccCcC
Q psy4557 402 EYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQED---YTVADFD 478 (958)
Q Consensus 402 ~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~---~~~~~~~ 478 (958)
+|..|++++|+||||||.+||..+|++++++||.||++|++||...+.++|||+||..+.+.......+. .......
T Consensus 80 ~~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~~~~~~~~ 159 (249)
T PF07993_consen 80 DYQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYPEEEDDLD 159 (249)
T ss_dssp HHHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-HHH--EEE
T ss_pred HhhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCcccccccccccccch
Confidence 8999999999999999999999999999999999999999999977778999999955555433222111 0111122
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhhC-CCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCC----cCCc
Q psy4557 479 DFMTTTSGYGQSKIVSEYLVLNAGQM-GLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDW----YLEF 553 (958)
Q Consensus 479 ~~~~~~~gY~~SK~~aE~lv~~a~~~-glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~----~~~~ 553 (958)
......+||.+|||+||++++++.++ |+|++|+|||+|+|++.+|.|+..|+++.+++.+..+|.+|.... .+||
T Consensus 160 ~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~ 239 (249)
T PF07993_consen 160 PPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDPDARLDL 239 (249)
T ss_dssp --TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB---TT--E
T ss_pred hhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCCCceEeE
Confidence 23356789999999999999998877 999999999999999999999999999999999999999997653 4999
Q ss_pred ccHHHHHHHH
Q psy4557 554 TPVDFLTKSL 563 (958)
Q Consensus 554 ~pVD~va~ai 563 (958)
+|||++|++|
T Consensus 240 vPVD~va~aI 249 (249)
T PF07993_consen 240 VPVDYVARAI 249 (249)
T ss_dssp EEHHHHHHHH
T ss_pred ECHHHHHhhC
Confidence 9999999987
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=394.76 Aligned_cols=468 Identities=18% Similarity=0.216 Sum_probs=320.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++++|||||++.||..+++.|++++ .+|+.+.|... ++.+.... ...++.++..|++.+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G-~~V~~~~r~~~------~~~~~~~~---------~~~~~~~~~~D~~~~---- 63 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAG-DQVVVADRNVE------RARERADS---------LGPDHHALAMDVSDE---- 63 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHH------HHHHHHHH---------hCCceeEEEeccCCH----
Confidence 35789999999999999999998764 67887777532 22222111 123566788888743
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCc------cc---ChHHHHhhhHHHHHHHHHhhcc----CCC-ccEEEEe
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNL------IL---PYNALYKSNVLATKNLIEFSFL----NKI-KSFHYVS 456 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~------~~---~~~~~~~~NV~gt~~ll~~a~~----~~~-k~~~~vS 456 (958)
+++..+. ..+|++||||+.... .. .++....+|+.|+..+++.+.. .+. .+++++|
T Consensus 64 ---~~~~~~~~~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~is 140 (520)
T PRK06484 64 ---AQIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVA 140 (520)
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 4444432 368999999986321 11 2345678999999999876643 222 3899999
Q ss_pred cccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHH
Q psy4557 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNL 532 (958)
Q Consensus 457 T~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~ 532 (958)
|....... .....|+.||+..+.+.+..+ ..|++++.+.||.|-.+.............
T Consensus 141 S~~~~~~~-----------------~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~ 203 (520)
T PRK06484 141 SGAGLVAL-----------------PKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDP 203 (520)
T ss_pred CcccCCCC-----------------CCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhh
Confidence 86543211 113479999999999887532 358999999999885432110000000000
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCC--CCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHH
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNN--ANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWF 610 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~--~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~ 610 (958)
... ....|. -.+...+.++++++.+...... .+.++.+.. |+
T Consensus 204 ~~~-----~~~~~~----~~~~~~~~va~~v~~l~~~~~~~~~G~~~~~~g----------------g~----------- 247 (520)
T PRK06484 204 SAV-----RSRIPL----GRLGRPEEIAEAVFFLASDQASYITGSTLVVDG----------------GW----------- 247 (520)
T ss_pred HHH-----HhcCCC----CCCcCHHHHHHHHHHHhCccccCccCceEEecC----------------Ce-----------
Confidence 000 001110 0123345555555544432110 011111000 00
Q ss_pred HHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCcc
Q psy4557 611 HKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVPLENNNSTEY 690 (958)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 690 (958)
..+ +. +.+.....
T Consensus 248 ---------------------------~~~------------~~-----------------------~~~~~~~~----- 260 (520)
T PRK06484 248 ---------------------------TVY------------GG-----------------------SGPASTAQ----- 260 (520)
T ss_pred ---------------------------ecc------------cc-----------------------ccCCCCcc-----
Confidence 000 00 00000000
Q ss_pred ccccccccccCCCcccccccCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEE
Q psy4557 691 TDTNKQGISISNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVK 770 (958)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~ 770 (958)
++ . ...+.||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.+...+
T Consensus 261 -~~--~--------------~~~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~ 320 (520)
T PRK06484 261 -AP--S--------------PLAESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---GDEHLSV 320 (520)
T ss_pred -CC--C--------------CcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCceeEE
Confidence 00 0 01237899999999999999999999999999999999998888877655 3456778
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEE
Q psy4557 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHIL 849 (958)
Q Consensus 771 ~~Dvs~~~~v~~~~~~~~~~~g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV 849 (958)
.+|++|+++++++++++.+.+|++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|+|. +.|+||
T Consensus 321 ~~D~~~~~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~---~~g~iv 397 (520)
T PRK06484 321 QADITDEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMS---QGGVIV 397 (520)
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhc---cCCEEE
Confidence 99999999999999999999999999999999863 35677889999999999999999999999999992 358999
Q ss_pred EecCccCcCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhhhhhhc-cccCCCCCC
Q psy4557 850 NISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDVVDKYD-ISKAVPVLT 926 (958)
Q Consensus 850 ~isS~~g~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~~~-~~~~~~~~~ 926 (958)
++||.++..+.++++.|++||+|+++|+|+|+.|++++|||||+|+||+|+|+|...... ......+. .....+..+
T Consensus 398 ~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (520)
T PRK06484 398 NLGSIASLLALPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIPLGRLGD 477 (520)
T ss_pred EECchhhcCCCCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999998653211 11111111 112235679
Q ss_pred HHHHHHHHHHHhcCCCCccccceEec
Q psy4557 927 TKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 927 p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
|+|+|+.++|+++ +...+++|..+.
T Consensus 478 ~~dia~~~~~l~s-~~~~~~~G~~i~ 502 (520)
T PRK06484 478 PEEVAEAIAFLAS-PAASYVNGATLT 502 (520)
T ss_pred HHHHHHHHHHHhC-ccccCccCcEEE
Confidence 9999999999765 555677776553
|
|
| >KOG1200|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=328.92 Aligned_cols=241 Identities=24% Similarity=0.326 Sum_probs=214.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++..|+++||||++|||+++++.|+++|++|++++++.+..++....+... +.-..+.||+++.++++..+++..+.+
T Consensus 10 ~r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~-~~h~aF~~DVS~a~~v~~~l~e~~k~~ 88 (256)
T KOG1200|consen 10 QRLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGY-GDHSAFSCDVSKAHDVQNTLEEMEKSL 88 (256)
T ss_pred HHHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCC-CccceeeeccCcHHHHHHHHHHHHHhc
Confidence 5688999999999999999999999999999999999998888888888665 345678999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-CCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLH-SRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~-~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
|++++||||||+.....+..++.++|++++++|+.|.|+++|++.+.|.. ++++++|||+||+.|..+..++..|++||
T Consensus 89 g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQtnYAAsK 168 (256)
T KOG1200|consen 89 GTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQTNYAASK 168 (256)
T ss_pred CCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccchhhhhhc
Confidence 99999999999999888899999999999999999999999999998643 34456999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+++.+|+|+.|+|++.++||||.|+||+|.|||....+.+-..+-....+..+..++||+|..+.|+. ++.+++++|..
T Consensus 169 ~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~mp~~v~~ki~~~iPmgr~G~~EevA~~V~fLA-S~~ssYiTG~t 247 (256)
T KOG1200|consen 169 GGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLGEAEEVANLVLFLA-SDASSYITGTT 247 (256)
T ss_pred CceeeeeHHHHHHHhhcCceEeEeccccccChhhhhcCHHHHHHHHccCCccccCCHHHHHHHHHHHh-cccccccccee
Confidence 99999999999999999999999999999999987654433222234445567899999999999965 78889999987
Q ss_pred ecCC
Q psy4557 951 IEPP 954 (958)
Q Consensus 951 i~p~ 954 (958)
++-+
T Consensus 248 ~evt 251 (256)
T KOG1200|consen 248 LEVT 251 (256)
T ss_pred EEEe
Confidence 7643
|
|
| >KOG1205|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=351.85 Aligned_cols=242 Identities=34% Similarity=0.527 Sum_probs=209.7
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC-C-cEEEEEecCCCHHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP-G-SIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~-~-~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
+..+++||+|+|||||+|||+++|++|+++|++++++.|+.++++++++++.+.. . ++++++||++|+++++++++++
T Consensus 6 ~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~ 85 (282)
T KOG1205|consen 6 FMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWA 85 (282)
T ss_pred cHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHH
Confidence 4467899999999999999999999999999999999999999998877775432 3 4899999999999999999999
Q ss_pred HHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhh
Q psy4557 788 LAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
...||++|+||||||+.......+.+.++++.+|++|++|+++++|+++|+|++++ .|+||+|||++|..+.|..+.||
T Consensus 86 ~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~~P~~~~Y~ 164 (282)
T KOG1205|consen 86 IRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMPLPFRSIYS 164 (282)
T ss_pred HHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccCCCcccccc
Confidence 99999999999999999866777888999999999999999999999999998554 79999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCC--cEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHH--HHHHHhcCCCC
Q psy4557 868 GTKYFIEGISGALRQEVSDRN--IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQ--SIIFALLQPSH 943 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~g--Irv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~--~i~~~l~~~~~ 943 (958)
|||+|+.+|+++|++|+...+ |++ +|+||+|+|++........... ....+...+++++. .+...+..+.+
T Consensus 165 ASK~Al~~f~etLR~El~~~~~~i~i-~V~PG~V~Te~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~ 239 (282)
T KOG1205|consen 165 ASKHALEGFFETLRQELIPLGTIIII-LVSPGPIETEFTGKELLGEEGK----SQQGPFLRTEDVADPEAVAYAISTPPC 239 (282)
T ss_pred hHHHHHHHHHHHHHHHhhccCceEEE-EEecCceeecccchhhcccccc----ccccchhhhhhhhhHHHHHHHHhcCcc
Confidence 999999999999999999988 566 9999999999865432211110 12234456677754 88888899999
Q ss_pred ccccceEecCCCCC
Q psy4557 944 SAVNSILIEPPLAS 957 (958)
Q Consensus 944 ~~i~~~~i~p~~~~ 957 (958)
..+..+.+.|..+.
T Consensus 240 ~~~~~~~~~p~~~~ 253 (282)
T KOG1205|consen 240 RQVEDIIIAPSWEK 253 (282)
T ss_pred cchhheeecccccc
Confidence 99999999998754
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=341.08 Aligned_cols=230 Identities=33% Similarity=0.502 Sum_probs=206.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++|++||||||+|||+++|++|+++|++|++++|+.++|+++++++... +.++.++.+|+++.+++.++.+++.+.+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 468999999999999999999999999999999999999999999999764 4678899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+.||+||||||....+++.+.+.++.++++++|+.+++.+++.++|.|. +++.|+||||+|.+|..+.|..+.|++||+
T Consensus 83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~-~~~~G~IiNI~S~ag~~p~p~~avY~ATKa 161 (265)
T COG0300 83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMV-ERGAGHIINIGSAAGLIPTPYMAVYSATKA 161 (265)
T ss_pred CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCceEEEEechhhcCCCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 456799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
++.+|+++|+.|+.++||+|.+|+||+|.|+++..... ..........+++|+++|+.++..+.......+-
T Consensus 162 ~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~~~~----~~~~~~~~~~~~~~~~va~~~~~~l~~~k~~ii~ 233 (265)
T COG0300 162 FVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDAKGS----DVYLLSPGELVLSPEDVAEAALKALEKGKREIIP 233 (265)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCcccccccccccc----ccccccchhhccCHHHHHHHHHHHHhcCCceEec
Confidence 99999999999999999999999999999999862111 1111223446789999999999988776554433
|
|
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=327.12 Aligned_cols=221 Identities=25% Similarity=0.392 Sum_probs=202.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++|++||||||++|||+++|.+||++|+++++.+.+.+..++..+++.+. ++++.+.||+++.+++.+..+++++.+
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~-g~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI-GEAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc-CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 5679999999999999999999999999999999999999999999998876 489999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|.+|+||||||+....++.+.+.+++++++++|+.|+|+++|+++|.|. +++.|+||+|+|++|..+.++...||+||+
T Consensus 113 G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~-~~~~GHIV~IaS~aG~~g~~gl~~YcaSK~ 191 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKML-ENNNGHIVTIASVAGLFGPAGLADYCASKF 191 (300)
T ss_pred CCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHH-hcCCceEEEehhhhcccCCccchhhhhhHH
Confidence 9999999999999999999999999999999999999999999999998 455799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC---CCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 872 FIEGISGALRQEVS---DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 872 a~~~l~~~la~el~---~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
|+.+|.++|..|+. .+||+.++|+|++++|.|... .. ..+...|.++|+++|+.|+..+....
T Consensus 192 a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~-~~-------~~~~l~P~L~p~~va~~Iv~ai~~n~ 257 (300)
T KOG1201|consen 192 AAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDG-AT-------PFPTLAPLLEPEYVAKRIVEAILTNQ 257 (300)
T ss_pred HHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCC-CC-------CCccccCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999884 557999999999999999865 11 12234688999999999999776544
|
|
| >KOG0725|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=327.55 Aligned_cols=240 Identities=32% Similarity=0.437 Sum_probs=201.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC---CcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP---GSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
.+|+||+++||||++|||+++|++|++.|++|++++|+.+++++...++...+ .++..+.||++++++++++++++.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999998888775443 458899999999999999999999
Q ss_pred HH-cCCccEEEEccccCCCc-cccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC-hh
Q psy4557 789 AE-LGHIDILVNNAGVMYFT-LMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL-AV 865 (958)
Q Consensus 789 ~~-~g~iDilInnAG~~~~~-~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~-~~ 865 (958)
++ +|+||+||||||..... ++.+.+.++|++++++|+.|.+++++.+++.|+++.++|+|+++||.++..+.++. ..
T Consensus 84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~~~~~ 163 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGSGVA 163 (270)
T ss_pred HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccc
Confidence 98 79999999999998755 68999999999999999997666555555555556667999999999999886666 79
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-CC---hhhhhh---hccccCCCCCCHHHHHHHHHHHh
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-TD---RDVVDK---YDISKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-~~---~~~~~~---~~~~~~~~~~~p~~ia~~i~~~l 938 (958)
|++||+|+.+|+|+||.||+++|||||+|+||.|.|++.... .. .+..+. ....+..+.++|+|+|..+.|++
T Consensus 164 Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~p~gr~g~~~eva~~~~fla 243 (270)
T KOG0725|consen 164 YGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVPLGRVGTPEEVAEAAAFLA 243 (270)
T ss_pred chhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccccccCCccCHHHHHHhHHhhc
Confidence 999999999999999999999999999999999999982111 11 111111 01113457899999999999987
Q ss_pred cCCCCccccceEec
Q psy4557 939 LQPSHSAVNSILIE 952 (958)
Q Consensus 939 ~~~~~~~i~~~~i~ 952 (958)
++... +++|..|-
T Consensus 244 ~~~as-yitG~~i~ 256 (270)
T KOG0725|consen 244 SDDAS-YITGQTII 256 (270)
T ss_pred Ccccc-cccCCEEE
Confidence 76666 99887664
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=331.32 Aligned_cols=238 Identities=21% Similarity=0.312 Sum_probs=202.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+|+||+++||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++.+|++++++++++++++. .
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~-~ 82 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK-N 82 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH-h
Confidence 4589999999999999999999999999999999999999988888777543 4568889999999999999999985 6
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|++|+||||||.....++.+.+.++|++++++|+.|++++++.++|+|.+ ++.|+||++||.++..+.++++.|+++|
T Consensus 83 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~-~~~g~Ii~isS~~~~~~~~~~~~y~asK 161 (263)
T PRK08339 83 IGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMER-KGFGRIIYSTSVAIKEPIPNIALSNVVR 161 (263)
T ss_pred hCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCEEEEEcCccccCCCCcchhhHHHH
Confidence 899999999999877777888999999999999999999999999999974 4468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----------Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----------DRDVVDKYD-ISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----------~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
+|+.+|+|+|+.|++++|||||+|+||+|+|+|..... .++...... ..+..++.+|+|+|.+++|+++
T Consensus 162 aal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~fL~s 241 (263)
T PRK08339 162 ISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKPIPLGRLGEPEEIGYLVAFLAS 241 (263)
T ss_pred HHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhccCCcccCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999853210 011111111 1123467899999999999765
Q ss_pred CCCCccccceEec
Q psy4557 940 QPSHSAVNSILIE 952 (958)
Q Consensus 940 ~~~~~~i~~~~i~ 952 (958)
+...+++|..+.
T Consensus 242 -~~~~~itG~~~~ 253 (263)
T PRK08339 242 -DLGSYINGAMIP 253 (263)
T ss_pred -chhcCccCceEE
Confidence 555677876553
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=330.95 Aligned_cols=236 Identities=18% Similarity=0.154 Sum_probs=193.2
Q ss_pred CCCCCCEEEEEcCCc--hHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~--GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
..|+||++|||||++ |||+++|++|+++|++|++++|+.+..+++.+...+.+ ....+++|++|.++++++++++.+
T Consensus 3 ~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g-~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 3 GLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG-SDFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC-CceEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999996 99999999999999999999998644433332222222 235689999999999999999999
Q ss_pred HcCCccEEEEccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh
Q psy4557 790 ELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~ 865 (958)
.+|++|+||||||+... .++.+.+.++|++++++|+.|+++++|.++|+|. + +|+||++||.++..+.|++..
T Consensus 82 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~--~-~G~Iv~isS~~~~~~~~~~~~ 158 (271)
T PRK06505 82 KWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMP--D-GGSMLTLTYGGSTRVMPNYNV 158 (271)
T ss_pred HhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhc--c-CceEEEEcCCCccccCCccch
Confidence 99999999999998643 4577889999999999999999999999999996 2 489999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh-hhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD-VVDKYD-ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~-~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|++||+|+.+|+|+|+.|++++|||||+|+||+|+|+|.....+.. ...... ..+..+..+|+|+|.+++|+++ +..
T Consensus 159 Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peeva~~~~fL~s-~~~ 237 (271)
T PRK06505 159 MGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSPLRRTVTIDEVGGSALYLLS-DLS 237 (271)
T ss_pred hhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCCccccCCHHHHHHHHHHHhC-ccc
Confidence 9999999999999999999999999999999999999864322111 111111 1122356899999999999765 556
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..+.
T Consensus 238 ~~itG~~i~ 246 (271)
T PRK06505 238 SGVTGEIHF 246 (271)
T ss_pred cccCceEEe
Confidence 677776654
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=325.67 Aligned_cols=235 Identities=17% Similarity=0.231 Sum_probs=196.0
Q ss_pred cCCCCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 710 ~~~~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
+++.++||+++||||+ +|||+++|++|+++|++|++++|+ ++.++..+++.. ..+..+++|++++++++++++++
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~-~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~ 77 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN-DRMKKSLQKLVD--EEDLLVECDVASDESIERAFATI 77 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc-hHHHHHHHhhcc--CceeEEeCCCCCHHHHHHHHHHH
Confidence 3467899999999999 899999999999999999999998 344444444432 35778999999999999999999
Q ss_pred HHHcCCccEEEEccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC
Q psy4557 788 LAELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~ 863 (958)
.+.+|++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|+|. + +|+||++||.++..+.+++
T Consensus 78 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~--~-~g~Iv~iss~~~~~~~~~~ 154 (252)
T PRK06079 78 KERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLN--P-GASIVTLTYFGSERAIPNY 154 (252)
T ss_pred HHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcc--c-CceEEEEeccCccccCCcc
Confidence 9999999999999998643 5677889999999999999999999999999985 2 4899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhcc-ccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYDI-SKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~~-~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+.|++||+|+.+|+|+|+.|++++|||||+|+||+|+|+|...... ++..+.+.. .+..++.+|+|+|.++.|+++ +
T Consensus 155 ~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~l~s-~ 233 (252)
T PRK06079 155 NVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTVDGVGVTIEEVGNTAAFLLS-D 233 (252)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCcccCCCCHHHHHHHHHHHhC-c
Confidence 9999999999999999999999999999999999999998643221 111121211 123467899999999999765 5
Q ss_pred CCccccceEe
Q psy4557 942 SHSAVNSILI 951 (958)
Q Consensus 942 ~~~~i~~~~i 951 (958)
...+++|..+
T Consensus 234 ~~~~itG~~i 243 (252)
T PRK06079 234 LSTGVTGDII 243 (252)
T ss_pred ccccccccEE
Confidence 5566776655
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=328.83 Aligned_cols=230 Identities=20% Similarity=0.247 Sum_probs=189.2
Q ss_pred CCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChh---hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 714 LANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRID---RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 714 l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~---~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
++||+++||||+ +|||+++|++|+++|++|++++|+.+ .++++.+++ +.. ..+++|++|.++++++++++.
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~---~~~-~~~~~Dv~d~~~v~~~~~~i~ 78 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQEL---GSD-YVYELDVSKPEHFKSLAESLK 78 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc---CCc-eEEEecCCCHHHHHHHHHHHH
Confidence 579999999997 89999999999999999999999853 233332222 333 578999999999999999999
Q ss_pred HHcCCccEEEEccccCC----CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 789 AELGHIDILVNNAGVMY----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~----~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
+.+|++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|. . +|+||++||.++..+.|++.
T Consensus 79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~-~--~g~Iv~isS~~~~~~~~~~~ 155 (274)
T PRK08415 79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLN-D--GASVLTLSYLGGVKYVPHYN 155 (274)
T ss_pred HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhc-c--CCcEEEEecCCCccCCCcch
Confidence 99999999999999864 25677889999999999999999999999999995 2 48999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh--ccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY--DISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~--~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.|++||+|+.+|+|+|+.|++++|||||+|+||+|+|+|.....+......+ ...+..+..+|+|+|.+++|+++ +.
T Consensus 156 ~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~r~~~pedva~~v~fL~s-~~ 234 (274)
T PRK08415 156 VMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEINAPLKKNVSIEEVGNSGMYLLS-DL 234 (274)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHhhhhhhhCchhccCCHHHHHHHHHHHhh-hh
Confidence 9999999999999999999999999999999999999875432111111111 11122356899999999999766 44
Q ss_pred CccccceEe
Q psy4557 943 HSAVNSILI 951 (958)
Q Consensus 943 ~~~i~~~~i 951 (958)
..+++|..+
T Consensus 235 ~~~itG~~i 243 (274)
T PRK08415 235 SSGVTGEIH 243 (274)
T ss_pred hhcccccEE
Confidence 557777554
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=324.68 Aligned_cols=236 Identities=17% Similarity=0.201 Sum_probs=192.7
Q ss_pred CCCCCCCEEEEEcCCc--hHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 711 ~~~l~~k~~lITGas~--GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
...++||+++||||++ |||+++|++|+++|++|++++|+. ..++..+++.+..+....+++|++|+++++++++++.
T Consensus 3 ~~~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~ 81 (260)
T PRK06603 3 TGLLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIK 81 (260)
T ss_pred CcccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHH
Confidence 3567899999999997 999999999999999999998883 3344344443322223467899999999999999999
Q ss_pred HHcCCccEEEEccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 789 AELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
+.+|++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|+|. .+|+|||+||.++..+.|++.
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~---~~G~Iv~isS~~~~~~~~~~~ 158 (260)
T PRK06603 82 EKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMH---DGGSIVTLTYYGAEKVIPNYN 158 (260)
T ss_pred HHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCceEEEEecCccccCCCccc
Confidence 999999999999998642 4577889999999999999999999999999995 248999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.|++||+|+.+|+|+|+.|++++|||||+|+||+|+|+|...... .+...... ..+..++.+|+|+|.+++|+++ +.
T Consensus 159 ~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~L~s-~~ 237 (260)
T PRK06603 159 VMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAPLKRNTTQEDVGGAAVYLFS-EL 237 (260)
T ss_pred chhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhC-cc
Confidence 999999999999999999999999999999999999998542211 11111111 1123456899999999999765 55
Q ss_pred CccccceEe
Q psy4557 943 HSAVNSILI 951 (958)
Q Consensus 943 ~~~i~~~~i 951 (958)
..+++|..+
T Consensus 238 ~~~itG~~i 246 (260)
T PRK06603 238 SKGVTGEIH 246 (260)
T ss_pred cccCcceEE
Confidence 667887544
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=321.11 Aligned_cols=236 Identities=23% Similarity=0.355 Sum_probs=199.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.++||+++||||++|||+++|++|+++|++|++++|+.. +++.+.+...+.++.++.+|++++++++++++++.+.+|
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999988642 344445555556788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|+|.+++.+|+||++||.++..+.++.+.|++||+|
T Consensus 83 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asK~a 162 (251)
T PRK12481 83 HIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVPSYTASKSA 162 (251)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCCCCcchHHHHHH
Confidence 99999999999877778889999999999999999999999999999755446899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+.+|+|+++.|++++|||||+|+||+|+|+|...... +...+.. ...+..++.+|+|+|..++|+++ +...+++|..
T Consensus 163 ~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~peeva~~~~~L~s-~~~~~~~G~~ 241 (251)
T PRK12481 163 VMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILERIPASRWGTPDDLAGPAIFLSS-SASDYVTGYT 241 (251)
T ss_pred HHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccCcCCce
Confidence 9999999999999999999999999999998654321 1111111 11123467899999999999765 5556777765
Q ss_pred e
Q psy4557 951 I 951 (958)
Q Consensus 951 i 951 (958)
|
T Consensus 242 i 242 (251)
T PRK12481 242 L 242 (251)
T ss_pred E
Confidence 4
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=321.47 Aligned_cols=236 Identities=19% Similarity=0.193 Sum_probs=192.3
Q ss_pred CCCCCEEEEEcC--CchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGS--SSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGa--s~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
+++||+++|||| ++|||+++|++|+++|++|++++|+. +.++..+++....+....++||++++++++++++++.+.
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHH
Confidence 478999999997 67999999999999999999988763 344444444433334567899999999999999999999
Q ss_pred cCCccEEEEccccCCCc-----cccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh
Q psy4557 791 LGHIDILVNNAGVMYFT-----LMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~-----~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~ 865 (958)
+|++|+||||||+.... .+.+.+.++|++++++|+.+++++++.++|.|. .+ +|+||++||.++..+.|++..
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~-~~-~g~Iv~iss~~~~~~~~~~~~ 159 (261)
T PRK08690 82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMR-GR-NSAIVALSYLGAVRAIPNYNV 159 (261)
T ss_pred hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhh-hc-CcEEEEEcccccccCCCCccc
Confidence 99999999999986432 235678899999999999999999999999986 33 489999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|++||+|+.+|+|+|+.|++++|||||+|+||+|+|+|...... .+..... ...+..++.+|+|+|..++|+++ +..
T Consensus 160 Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~l~s-~~~ 238 (261)
T PRK08690 160 MGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLRRNVTIEEVGNTAAFLLS-DLS 238 (261)
T ss_pred chhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC-ccc
Confidence 99999999999999999999999999999999999998643321 1111111 11123467899999999999765 545
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..+.
T Consensus 239 ~~~tG~~i~ 247 (261)
T PRK08690 239 SGITGEITY 247 (261)
T ss_pred CCcceeEEE
Confidence 577776664
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=320.30 Aligned_cols=235 Identities=20% Similarity=0.240 Sum_probs=194.0
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChh--hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRID--RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 713 ~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~--~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
+++||+++||||+ +|||+++|++|+++|++|++++|+.+ +.++..+++.+....+.++++|++++++++++++++.
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 82 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK 82 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH
Confidence 3689999999986 89999999999999999999876543 3444445554444456788999999999999999999
Q ss_pred HHcCCccEEEEccccCC----CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 789 AELGHIDILVNNAGVMY----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~----~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
+.+|++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|. + +|+||++||.++..+.|++.
T Consensus 83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~-~--~g~Iv~isS~~~~~~~~~~~ 159 (258)
T PRK07370 83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMS-E--GGSIVTLTYLGGVRAIPNYN 159 (258)
T ss_pred HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHh-h--CCeEEEEeccccccCCcccc
Confidence 99999999999999864 25677889999999999999999999999999996 2 48999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.|++||+|+.+|+|+|+.|++++||+||+|+||+|+|++...... ++...... ..+..++.+|+|++..++|+++ +.
T Consensus 160 ~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~fl~s-~~ 238 (258)
T PRK07370 160 VMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKAPLRRTVTQTEVGNTAAFLLS-DL 238 (258)
T ss_pred hhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhcCCcCcCCCHHHHHHHHHHHhC-hh
Confidence 999999999999999999999999999999999999998643211 11111111 1123467899999999999765 55
Q ss_pred CccccceEe
Q psy4557 943 HSAVNSILI 951 (958)
Q Consensus 943 ~~~i~~~~i 951 (958)
..+++|..+
T Consensus 239 ~~~~tG~~i 247 (258)
T PRK07370 239 ASGITGQTI 247 (258)
T ss_pred hccccCcEE
Confidence 667877544
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=327.18 Aligned_cols=240 Identities=19% Similarity=0.258 Sum_probs=196.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh----------hhHHHHHHHhhcCCCcEEEEEecCCCHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI----------DRLENLKTSLQNAPGSIIVKKLDVTIENDVK 781 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~----------~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~ 781 (958)
..++||+++||||++|||+++|++|+++|++|++++|+. ++++++.+++...+.++.++++|++++++++
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~ 83 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVR 83 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 457999999999999999999999999999999999983 4667777777666667888999999999999
Q ss_pred HHHHHHHHHcCCccEEEEcc-ccCC----CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccC
Q psy4557 782 KVVREVLAELGHIDILVNNA-GVMY----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAG 856 (958)
Q Consensus 782 ~~~~~~~~~~g~iDilInnA-G~~~----~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g 856 (958)
++++++.+.||+||+||||| |... ..++.+.+.++|++++++|+.|+++++++++|+|.++ ++|+|||+||..+
T Consensus 84 ~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~-~~g~IV~isS~~~ 162 (305)
T PRK08303 84 ALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRR-PGGLVVEITDGTA 162 (305)
T ss_pred HHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhC-CCcEEEEECCccc
Confidence 99999999999999999999 8531 2456778899999999999999999999999999743 4589999999876
Q ss_pred cC---CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC---CChhhhhhhcccc-CCCCCCHHH
Q psy4557 857 VR---PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS---TDRDVVDKYDISK-AVPVLTTKE 929 (958)
Q Consensus 857 ~~---~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~---~~~~~~~~~~~~~-~~~~~~p~~ 929 (958)
.. +.++...|++||+|+.+|+|+|+.|++++|||||+|+||+|+|+|.... ............. ..+..+|+|
T Consensus 163 ~~~~~~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~p~~~~~~~pee 242 (305)
T PRK08303 163 EYNATHYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEENWRDALAKEPHFAISETPRY 242 (305)
T ss_pred cccCcCCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCccchhhhhccccccccCCCHHH
Confidence 43 3446778999999999999999999999999999999999999985321 1111101111111 123468999
Q ss_pred HHHHHHHHhcCCCCccccceEec
Q psy4557 930 ISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 930 ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+|..++|+++.+...+++|..+.
T Consensus 243 vA~~v~fL~s~~~~~~itG~~l~ 265 (305)
T PRK08303 243 VGRAVAALAADPDVARWNGQSLS 265 (305)
T ss_pred HHHHHHHHHcCcchhhcCCcEEE
Confidence 99999998877766678888765
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=318.93 Aligned_cols=234 Identities=17% Similarity=0.188 Sum_probs=191.5
Q ss_pred CCCCEEEEEcCCc--hHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~--GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++||+++||||++ |||+++|++|+++|++|++++|+ +++++..+++....+...++.||++|+++++++++++.+.|
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 7899999999986 99999999999999999999988 45555555555444456778999999999999999999999
Q ss_pred CCccEEEEccccCCCcc-----ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhh
Q psy4557 792 GHIDILVNNAGVMYFTL-----MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVY 866 (958)
Q Consensus 792 g~iDilInnAG~~~~~~-----~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y 866 (958)
|++|+||||||+..... +.+.+.++|++++++|+.|++.+++.+.|.|. .+|+||++||.++..+.|++..|
T Consensus 83 g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~---~~g~Iv~iss~~~~~~~~~~~~Y 159 (262)
T PRK07984 83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN---PGSALLTLSYLGAERAIPNYNVM 159 (262)
T ss_pred CCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhc---CCcEEEEEecCCCCCCCCCcchh
Confidence 99999999999864322 55678999999999999999999999988653 24899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh-hhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR-DVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~-~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
++||+|+.+|+|+|+.|++++|||||+|+||+|+|+|....... ...... ......++.+|+|+|..++|+++ +...
T Consensus 160 ~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~L~s-~~~~ 238 (262)
T PRK07984 160 GLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCS-DLSA 238 (262)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcCCCcCCCCHHHHHHHHHHHcC-cccc
Confidence 99999999999999999999999999999999999875322111 111111 11123467899999999999765 5456
Q ss_pred cccceEec
Q psy4557 945 AVNSILIE 952 (958)
Q Consensus 945 ~i~~~~i~ 952 (958)
++++..|.
T Consensus 239 ~itG~~i~ 246 (262)
T PRK07984 239 GISGEVVH 246 (262)
T ss_pred cccCcEEE
Confidence 77776553
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=345.75 Aligned_cols=486 Identities=17% Similarity=0.182 Sum_probs=305.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCC-CCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDT-KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~-~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
+.++|||||||||||+||+++|+++. +.+|+++.|...... ..++.. .....+++++.+|++.+
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~-~~~l~~-----------~~~~~~v~~~~~Dl~d~--- 69 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSN-LKNLNP-----------SKSSPNFKFVKGDIASA--- 69 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccch-hhhhhh-----------cccCCCeEEEECCCCCh---
Confidence 45789999999999999999999864 578999887431111 111110 00124788999998753
Q ss_pred CCcHHHHHHH--hcccCEEEEcccccCcccCh---HHHHhhhHHHHHHHHHhhccCC-CccEEEEecccccCCCCCCCcc
Q psy4557 397 LKNQDEYVSL--SYEIDMIIHAAAFVNLILPY---NALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDSIYPSTSENFQE 470 (958)
Q Consensus 397 L~~~~~~~~l--~~~vd~IiH~AA~v~~~~~~---~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~v~~~~~~~~~e 470 (958)
+....+ ..++|+|||+||.++....+ .++..+|+.||.+|++.|+..+ +++|+|+||.+|||........
T Consensus 70 ----~~~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~ 145 (668)
T PLN02260 70 ----DLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADV 145 (668)
T ss_pred ----HHHHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCcccccc
Confidence 233332 36799999999987654333 4577899999999999998765 7899999999999865322110
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---C
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---D 546 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~ 546 (958)
. .....+..+.+.|+.||+.+|+++..+. +.|++++|+||++|||+.+... .++..++..+..-+.++ +
T Consensus 146 ~---~~E~~~~~p~~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~----~~i~~~~~~a~~g~~i~i~g~ 218 (668)
T PLN02260 146 G---NHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE----KLIPKFILLAMQGKPLPIHGD 218 (668)
T ss_pred C---ccccCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcc----cHHHHHHHHHhCCCCeEEecC
Confidence 0 0111223466789999999999998754 5699999999999999875321 23444444433323222 2
Q ss_pred CCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH-cCCCccc-cChHHHHHHHhccCCCchhHH
Q psy4557 547 IDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT-YGYNIKT-VPYEKWFHKLNKRELSEPLIQ 624 (958)
Q Consensus 547 ~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~~~~~-v~~~eW~~~~~~~~~~~~~~~ 624 (958)
.....+|++||++|++++.+.... ..+.+||+.++.++++.|+++.+.+ .|.+.+. +.+ ... .+
T Consensus 219 g~~~r~~ihV~Dva~a~~~~l~~~-~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~------~~~----~p--- 284 (668)
T PLN02260 219 GSNVRSYLYCEDVAEAFEVVLHKG-EVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKF------VEN----RP--- 284 (668)
T ss_pred CCceEeeEEHHHHHHHHHHHHhcC-CCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeee------cCC----CC---
Confidence 335679999999999999877543 3468999999999999999998875 4643221 100 000 00
Q ss_pred HHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCC--------C-CCCCCCC-CCCCcccccc
Q psy4557 625 ILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNL--------L-PNVPLEN-NNSTEYTDTN 694 (958)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~--------l-~~~~~~~-~~~~~~~~~~ 694 (958)
+.......|+++. +++|.+...-=++-|+.+++|+.+.+. | |.|...+ +...+. +..
T Consensus 285 --------~~~~~~~~d~~k~----~~lGw~p~~~~~egl~~~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 351 (668)
T PLN02260 285 --------FNDQRYFLDDQKL----KKLGWQERTSWEEGLKKTMEWYTSNPDWWGDVSGALLPHPRMLMMPGVRLF-DGS 351 (668)
T ss_pred --------CCcceeecCHHHH----HHcCCCCCCCHHHHHHHHHHHHHhChhhhhccccccccCCCcccccccccc-cch
Confidence 0001122455554 346765432224678888888875443 2 3333322 110000 000
Q ss_pred c---cccccCCCcc----cccccCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcE
Q psy4557 695 K---QGISISNAGT----VNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI 767 (958)
Q Consensus 695 ~---~~~~~~~~~~----~~~~~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~ 767 (958)
+ .+++.+..+- ....-..+-+.+.++||||+|=||+++++.|.++|+.|...
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~--------------------- 410 (668)
T PLN02260 352 EEIKLSSSGSQTGLVVVTKPAGSSPGKPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG--------------------- 410 (668)
T ss_pred hhhccccccccccccccccccccCCCCCCceEEEECCCchHHHHHHHHHHhCCCeEEee---------------------
Confidence 0 0001111110 00001122344579999999999999999999999887321
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcE
Q psy4557 768 IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGH 847 (958)
Q Consensus 768 ~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~ 847 (958)
..|++|.+.+.+.++.. ++|++||+|+....... +...+.-...+++|+.|+..+++++.. . + .+
T Consensus 411 ---~~~l~d~~~v~~~i~~~-----~pd~Vih~Aa~~~~~~~-~~~~~~~~~~~~~N~~gt~~l~~a~~~----~-g-~~ 475 (668)
T PLN02260 411 ---KGRLEDRSSLLADIRNV-----KPTHVFNAAGVTGRPNV-DWCESHKVETIRANVVGTLTLADVCRE----N-G-LL 475 (668)
T ss_pred ---ccccccHHHHHHHHHhh-----CCCEEEECCcccCCCCC-ChHHhCHHHHHHHHhHHHHHHHHHHHH----c-C-Ce
Confidence 13577777776665542 58999999997642211 112234468899999999999988743 1 2 24
Q ss_pred EEEecCccCc-----------CC-------CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEE
Q psy4557 848 ILNISSNAGV-----------RP-------FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895 (958)
Q Consensus 848 IV~isS~~g~-----------~~-------~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~ 895 (958)
.|++||.... .+ .+....|+.||.+.+.+.+..+. ...+|+..+.
T Consensus 476 ~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~~~Yg~sK~~~E~~~~~~~~---~~~~r~~~~~ 538 (668)
T PLN02260 476 MMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREYDN---VCTLRVRMPI 538 (668)
T ss_pred EEEEcccceecCCcccccccCCCCCcCCCCCCCCChhhHHHHHHHHHHHhhhh---heEEEEEEec
Confidence 5566553210 01 12236799999999999877532 2456665554
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=316.45 Aligned_cols=237 Identities=27% Similarity=0.362 Sum_probs=203.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++..+.+|++++++++++++++.+.+|
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999999998888876666788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC-C-CChhhhHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-A-GLAVYTGTK 870 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-~-~~~~Y~asK 870 (958)
++|+||||||.....++.+.+.++|++++++|+.|++++++.++|.|.+++.+|+||++||.++..+. + +...|++||
T Consensus 86 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~Y~asK 165 (253)
T PRK05867 86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHYCASK 165 (253)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCCCCCccchHHHH
Confidence 99999999999877778888999999999999999999999999999755546899999999886543 3 467899999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
+|+++|+++|+.|++++||+||+|+||+|+|+|...... ..... ......++.+|+|+|..++|+++ +...+++|.
T Consensus 166 aal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~~~--~~~~~~~~~~~~r~~~p~~va~~~~~L~s-~~~~~~tG~ 242 (253)
T PRK05867 166 AAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPYTE--YQPLWEPKIPLGRLGRPEELAGLYLYLAS-EASSYMTGS 242 (253)
T ss_pred HHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccchH--HHHHHHhcCCCCCCcCHHHHHHHHHHHcC-cccCCcCCC
Confidence 999999999999999999999999999999998654321 11111 11123467899999999999764 566788876
Q ss_pred Eec
Q psy4557 950 LIE 952 (958)
Q Consensus 950 ~i~ 952 (958)
.|.
T Consensus 243 ~i~ 245 (253)
T PRK05867 243 DIV 245 (253)
T ss_pred eEE
Confidence 553
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=317.43 Aligned_cols=239 Identities=26% Similarity=0.378 Sum_probs=205.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc--CCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN--APGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
++++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.. .+.++.++++|+++++++.++++++.+
T Consensus 3 ~~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 3 NRLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999988888865 345688899999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
.+|++|+||||||+.....+.+.+.++|++++++|+.|+++++++++|.|.+ ++.|+||++||..+..+.++...|++|
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~Y~~s 161 (260)
T PRK07063 83 AFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVE-RGRGSIVNIASTHAFKIIPGCFPYPVA 161 (260)
T ss_pred HhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hCCeEEEEECChhhccCCCCchHHHHH
Confidence 9999999999999876666678889999999999999999999999999974 446899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----CChh-hhhh-hccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----TDRD-VVDK-YDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~~~~-~~~~-~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|+|+.+|+|+|+.|++++|||||+|+||+|+|++.... .+.. .... .......++.+|+|+|..++|+++ +..
T Consensus 162 Kaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~va~~~~fl~s-~~~ 240 (260)
T PRK07063 162 KHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQPMKRIGRPEEVAMTAVFLAS-DEA 240 (260)
T ss_pred HHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC-ccc
Confidence 99999999999999999999999999999999985431 1111 1111 112233467899999999999765 555
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..|.
T Consensus 241 ~~itG~~i~ 249 (260)
T PRK07063 241 PFINATCIT 249 (260)
T ss_pred cccCCcEEE
Confidence 688887664
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=322.93 Aligned_cols=235 Identities=23% Similarity=0.267 Sum_probs=191.7
Q ss_pred CCCCCCEEEEEcC--CchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC---------CC----cEEEEEecC--
Q psy4557 712 NTLANKVIFVTGS--SSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA---------PG----SIIVKKLDV-- 774 (958)
Q Consensus 712 ~~l~~k~~lITGa--s~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~---------~~----~~~~~~~Dv-- 774 (958)
.+|+||++||||| |+|||+++|+.|+++|++|++ +|+.++++++++.+... .+ ....+.+|+
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF 83 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence 3489999999999 899999999999999999998 89989998888766421 11 135678898
Q ss_pred CC------------------HHHHHHHHHHHHHHcCCccEEEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHHHH
Q psy4557 775 TI------------------ENDVKKVVREVLAELGHIDILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCIGN 834 (958)
Q Consensus 775 s~------------------~~~v~~~~~~~~~~~g~iDilInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~~~ 834 (958)
++ .++++++++++.+.||++|+||||||+.. ..++.+.+.++|+++|++|++|+++++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~ 163 (303)
T PLN02730 84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH 163 (303)
T ss_pred CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 33 34899999999999999999999998643 36788999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEecCccCcCCCCCC-hhhhHHHHHHHHHHHHHHHHhCC-CCcEEEEEECCcccCCCCCCCC-Chh
Q psy4557 835 ILPSMLHSRRPGHILNISSNAGVRPFAGL-AVYTGTKYFIEGISGALRQEVSD-RNIKVTCIQAGDVKTELLSHST-DRD 911 (958)
Q Consensus 835 ~l~~m~~~~~~g~IV~isS~~g~~~~~~~-~~Y~asKaa~~~l~~~la~el~~-~gIrv~~v~PG~v~T~~~~~~~-~~~ 911 (958)
++|.|.+ .|+|||+||.++..+.|++ ..|++||+|+.+|+|+|+.|+++ +|||||+|+||+|+|+|..... .++
T Consensus 164 ~~p~m~~---~G~II~isS~a~~~~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~~~~~~~~~~ 240 (303)
T PLN02730 164 FGPIMNP---GGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRAAKAIGFIDD 240 (303)
T ss_pred HHHHHhc---CCEEEEEechhhcCCCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCchhhcccccHH
Confidence 9999962 3999999999999988876 58999999999999999999986 8999999999999999975421 111
Q ss_pred hhhhhcc-ccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 912 VVDKYDI-SKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 912 ~~~~~~~-~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
....... ....+..+|+|++..++|+++ +...++++..+
T Consensus 241 ~~~~~~~~~pl~r~~~peevA~~~~fLaS-~~a~~itG~~l 280 (303)
T PLN02730 241 MIEYSYANAPLQKELTADEVGNAAAFLAS-PLASAITGATI 280 (303)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccCccCCEE
Confidence 1111111 122457899999999999765 44556666654
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=317.08 Aligned_cols=232 Identities=18% Similarity=0.210 Sum_probs=191.7
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChhh---HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRIDR---LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 713 ~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~~---l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
+++||+++||||+ +|||+++|++|+++|++|++++|+.+. ++++.+++ +...+++||++++++++++++++
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~ 82 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL----DAPIFLPLDVREPGQLEAVFARI 82 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh----ccceEEecCcCCHHHHHHHHHHH
Confidence 3689999999998 599999999999999999999998643 33333333 23557899999999999999999
Q ss_pred HHHcCCccEEEEccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC
Q psy4557 788 LAELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~ 863 (958)
.+.+|++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|+|. .+|+||++||.++..+.+++
T Consensus 83 ~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~---~~g~Ii~iss~~~~~~~~~~ 159 (258)
T PRK07533 83 AEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMT---NGGSLLTMSYYGAEKVVENY 159 (258)
T ss_pred HHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhc---cCCEEEEEeccccccCCccc
Confidence 9999999999999998642 4567889999999999999999999999999995 24899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKY-DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+.|++||+|+.+|+|+|+.|++++|||||+|+||+|+|+|...... .+..+.. ...+..++.+|+|+|..++|+++ +
T Consensus 160 ~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~L~s-~ 238 (258)
T PRK07533 160 NLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERAPLRRLVDIDDVGAVAAFLAS-D 238 (258)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhC-h
Confidence 9999999999999999999999999999999999999998643211 1111111 11123357899999999999765 4
Q ss_pred CCccccceEec
Q psy4557 942 SHSAVNSILIE 952 (958)
Q Consensus 942 ~~~~i~~~~i~ 952 (958)
...+++|..+.
T Consensus 239 ~~~~itG~~i~ 249 (258)
T PRK07533 239 AARRLTGNTLY 249 (258)
T ss_pred hhccccCcEEe
Confidence 45677776654
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=318.91 Aligned_cols=233 Identities=19% Similarity=0.227 Sum_probs=190.9
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecCh---hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRI---DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 713 ~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~---~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
.++||+++||||+ +|||+++|++|+++|++|++++|+. ++++++.+++ +....+++|++++++++++++++
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~v~~~~~~~ 82 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAEL----GAFVAGHCDVTDEASIDAVFETL 82 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhc----CCceEEecCCCCHHHHHHHHHHH
Confidence 4689999999997 8999999999999999999998873 2333333332 23556899999999999999999
Q ss_pred HHHcCCccEEEEccccCC----CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC
Q psy4557 788 LAELGHIDILVNNAGVMY----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~----~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~ 863 (958)
.+.+|++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|+|. ++|+||++||.++..+.|++
T Consensus 83 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~---~~g~Iv~iss~~~~~~~p~~ 159 (272)
T PRK08159 83 EKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMT---DGGSILTLTYYGAEKVMPHY 159 (272)
T ss_pred HHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcC---CCceEEEEeccccccCCCcc
Confidence 999999999999999864 24677889999999999999999999999999885 24899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-c-cccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-D-ISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~-~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
..|++||+|+.+|+|+|+.|++++|||||+|+||+|+|+|.....+....... . ..+..+..+|+|+|..++|+++ +
T Consensus 160 ~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~~~~L~s-~ 238 (272)
T PRK08159 160 NVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTIEEVGDSALYLLS-D 238 (272)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcchHHHHHHHhCCcccccCCHHHHHHHHHHHhC-c
Confidence 99999999999999999999999999999999999999875432111111111 1 1122356899999999999765 5
Q ss_pred CCccccceEecC
Q psy4557 942 SHSAVNSILIEP 953 (958)
Q Consensus 942 ~~~~i~~~~i~p 953 (958)
...+++|..|..
T Consensus 239 ~~~~itG~~i~v 250 (272)
T PRK08159 239 LSRGVTGEVHHV 250 (272)
T ss_pred cccCccceEEEE
Confidence 556888866643
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=315.62 Aligned_cols=234 Identities=17% Similarity=0.188 Sum_probs=194.1
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecCh---hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRI---DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 713 ~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~---~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
+++||+++||||+ +|||+++|++|+++|++|++++|+. +.++++.+++. +.++..+++|++|+++++++++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHHHH
Confidence 5789999999997 8999999999999999999998753 45566655543 356788899999999999999999
Q ss_pred HHHcCCccEEEEccccCC----CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC
Q psy4557 788 LAELGHIDILVNNAGVMY----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~----~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~ 863 (958)
.+.+|++|+||||||+.. ..++.+.+.++|++++++|+.+++++++.++|.|. + +|+|||+||.++..+.+++
T Consensus 82 ~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~-~g~Iv~isS~~~~~~~~~~ 158 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMT--E-GGSIVTLTYLGGERVVQNY 158 (257)
T ss_pred HHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcc--c-CceEEEEcccCCccCCCCC
Confidence 999999999999999864 24567889999999999999999999999999985 2 4899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+.|++||+|+.+|+|+|+.|++++|||||+|+||+|+|++...... .+...... ..+..++.+|+|+|..++|+++ +
T Consensus 159 ~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~l~s-~ 237 (257)
T PRK08594 159 NVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEERAPLRRTTTQEEVGDTAAFLFS-D 237 (257)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhcCCccccCCHHHHHHHHHHHcC-c
Confidence 9999999999999999999999999999999999999997532111 11111111 1123457899999999999664 5
Q ss_pred CCccccceEec
Q psy4557 942 SHSAVNSILIE 952 (958)
Q Consensus 942 ~~~~i~~~~i~ 952 (958)
...+++|..+.
T Consensus 238 ~~~~~tG~~~~ 248 (257)
T PRK08594 238 LSRGVTGENIH 248 (257)
T ss_pred ccccccceEEE
Confidence 55677776553
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=314.77 Aligned_cols=232 Identities=19% Similarity=0.187 Sum_probs=187.4
Q ss_pred CCCCCEEEEEcC--CchHHHHHHHHHHHcCCeEEEEecC---hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGS--SSGIGEQLVKDLVTLGAKVVAVARR---IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 713 ~l~~k~~lITGa--s~GIG~aia~~la~~Ga~Vi~~~r~---~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
+++||+++|||| ++|||+++|++|+++|++|++++|. .++++++.+++ + ....+++|++|+++++++++++
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~Dv~d~~~v~~~~~~~ 78 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF---G-SDLVFPCDVASDEQIDALFASL 78 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhc---C-CcceeeccCCCHHHHHHHHHHH
Confidence 478999999996 6899999999999999999998654 33344333322 2 2346889999999999999999
Q ss_pred HHHcCCccEEEEccccCCCc----c-ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC
Q psy4557 788 LAELGHIDILVNNAGVMYFT----L-MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG 862 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~~----~-~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~ 862 (958)
.+.+|++|+||||||+.... + +.+.+.++|++++++|+.|+++++++++|+|. ++|+|||+||.++..+.++
T Consensus 79 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~---~~g~Ii~iss~~~~~~~~~ 155 (260)
T PRK06997 79 GQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLS---DDASLLTLSYLGAERVVPN 155 (260)
T ss_pred HHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCceEEEEeccccccCCCC
Confidence 99999999999999986432 2 45678899999999999999999999999994 2489999999999999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcC
Q psy4557 863 LAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 863 ~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
+..|++||+|+.+|+|+|+.|++++|||||+|+||+|+|+|.....+ .+...... ..+..+..+|+|+|++++|+++
T Consensus 156 ~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~l~s- 234 (260)
T PRK06997 156 YNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNAPLRRNVTIEEVGNVAAFLLS- 234 (260)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhcCcccccCCHHHHHHHHHHHhC-
Confidence 99999999999999999999999999999999999999987543211 11111111 1123456899999999999766
Q ss_pred CCCccccceEec
Q psy4557 941 PSHSAVNSILIE 952 (958)
Q Consensus 941 ~~~~~i~~~~i~ 952 (958)
+...++++..+.
T Consensus 235 ~~~~~itG~~i~ 246 (260)
T PRK06997 235 DLASGVTGEITH 246 (260)
T ss_pred ccccCcceeEEE
Confidence 445677776653
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=317.63 Aligned_cols=236 Identities=21% Similarity=0.346 Sum_probs=200.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh---------hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI---------DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKV 783 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~---------~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~ 783 (958)
.++||+++||||++|||+++|++|+++|++|++++|+. +.++++.+++...+.++.++.+|+++++++.++
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL 82 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence 47899999999999999999999999999999998876 778888888876667788899999999999999
Q ss_pred HHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-----CcEEEEecCccCcC
Q psy4557 784 VREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRR-----PGHILNISSNAGVR 858 (958)
Q Consensus 784 ~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~-----~g~IV~isS~~g~~ 858 (958)
++++.+.+|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|+|.+... .|+||++||.++..
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~ 162 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ 162 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence 9999999999999999999987777888999999999999999999999999999974321 37999999999999
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHh
Q psy4557 859 PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 859 ~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l 938 (958)
+.+++..|++||+|+.+|+|+|+.|++++|||||+|+|| +.|+|..... ........ ....+..+|+|+|..++|++
T Consensus 163 ~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~~~~-~~~~~~~~-~~~~~~~~pedva~~~~~L~ 239 (286)
T PRK07791 163 GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTETVF-AEMMAKPE-EGEFDAMAPENVSPLVVWLG 239 (286)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcchhhH-HHHHhcCc-ccccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999 8999853211 11001000 01123579999999999976
Q ss_pred cCCCCccccceEec
Q psy4557 939 LQPSHSAVNSILIE 952 (958)
Q Consensus 939 ~~~~~~~i~~~~i~ 952 (958)
+ +...+++|..+.
T Consensus 240 s-~~~~~itG~~i~ 252 (286)
T PRK07791 240 S-AESRDVTGKVFE 252 (286)
T ss_pred C-chhcCCCCcEEE
Confidence 5 455677776553
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=312.34 Aligned_cols=240 Identities=22% Similarity=0.290 Sum_probs=204.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
..+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++..+.+|+++.++++++++++.
T Consensus 3 ~~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T PRK07062 3 QIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE 82 (265)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999888888777554 2367788999999999999999999
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
+.+|++|+||||||.....++.+.+.++|++.+++|+.|++++++.++|.|.+ ++.|+||++||.++..+.++...|++
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~y~a 161 (265)
T PRK07062 83 ARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRA-SAAASIVCVNSLLALQPEPHMVATSA 161 (265)
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc-cCCcEEEEeccccccCCCCCchHhHH
Confidence 99999999999999987777888999999999999999999999999999974 44689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC---------hhhhhhh---ccccCCCCCCHHHHHHHHHH
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD---------RDVVDKY---DISKAVPVLTTKEISQSIIF 936 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~---------~~~~~~~---~~~~~~~~~~p~~ia~~i~~ 936 (958)
+|+|+.+|+++|+.|++++||+||+|+||+|+|+++..... ....... ...+..++.+|+|+|..++|
T Consensus 162 sKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~ 241 (265)
T PRK07062 162 ARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGIPLGRLGRPDEAARALFF 241 (265)
T ss_pred HHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCCCcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999998643110 0000000 11123357899999999999
Q ss_pred HhcCCCCccccceEec
Q psy4557 937 ALLQPSHSAVNSILIE 952 (958)
Q Consensus 937 ~l~~~~~~~i~~~~i~ 952 (958)
++ ++...+++|..+.
T Consensus 242 L~-s~~~~~~tG~~i~ 256 (265)
T PRK07062 242 LA-SPLSSYTTGSHID 256 (265)
T ss_pred Hh-CchhcccccceEE
Confidence 65 4556678877654
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=308.30 Aligned_cols=238 Identities=27% Similarity=0.380 Sum_probs=203.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|+++.++++++++++.+.+|
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999988888876667788899999999999999999999999
Q ss_pred CccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-CCCCCChhhhHHH
Q psy4557 793 HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-RPFAGLAVYTGTK 870 (958)
Q Consensus 793 ~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-~~~~~~~~Y~asK 870 (958)
++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|.+ ++.|+||++||.++. .+.+++..|++||
T Consensus 83 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~-~~~~~iv~~sS~~~~~~~~~~~~~Y~~sK 161 (254)
T PRK07478 83 GLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLA-RGGGSLIFTSTFVGHTAGFPGMAAYAASK 161 (254)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCceEEEEechHhhccCCCCcchhHHHH
Confidence 9999999999864 456778899999999999999999999999999974 446899999999887 5788999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+|+++|+++|+.|++++||+||+|+||+++|+|...... +....... .....+..+|+|+|+.++|+++ +...+++|
T Consensus 162 ~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s-~~~~~~~G 240 (254)
T PRK07478 162 AGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLHALKRMAQPEEIAQAALFLAS-DAASFVTG 240 (254)
T ss_pred HHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-chhcCCCC
Confidence 999999999999999999999999999999998654321 11111111 1123456799999999999765 44557787
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..+.
T Consensus 241 ~~~~ 244 (254)
T PRK07478 241 TALL 244 (254)
T ss_pred CeEE
Confidence 6554
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=310.84 Aligned_cols=236 Identities=23% Similarity=0.368 Sum_probs=201.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.++||+++||||++|||+++|++|+++|++|++++|+ ++++++.+++.+.+.++..+.+|++++++++++++++.+.+|
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999999 888888888866666788999999999999999999999999
Q ss_pred CccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 793 HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 793 ~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
++|+||||||+.. ..++.+.+.+.|++++++|+.|++++++.++|+|.+. +|+||++||.++..+.++.+.|++||+
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~~~~~~Y~asKa 159 (272)
T PRK08589 82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSFSGQAADLYRSGYNAAKG 159 (272)
T ss_pred CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCchhhcCCCCCCchHHHHHH
Confidence 9999999999864 3567788999999999999999999999999999743 389999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--h-hhhhhhc-----cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--R-DVVDKYD-----ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~-~~~~~~~-----~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|+++|+++++.|++++||+||+|+||+|+|+|...... . .....+. .....++.+|+|+|+.++|+++ +..
T Consensus 160 al~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s-~~~ 238 (272)
T PRK08589 160 AVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKWMTPLGRLGKPEEVAKLVVFLAS-DDS 238 (272)
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhccCCCCCCcCHHHHHHHHHHHcC-chh
Confidence 99999999999999999999999999999998654211 1 0001110 1122356799999999999765 444
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..+.
T Consensus 239 ~~~~G~~i~ 247 (272)
T PRK08589 239 SFITGETIR 247 (272)
T ss_pred cCcCCCEEE
Confidence 577776654
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=309.75 Aligned_cols=233 Identities=19% Similarity=0.207 Sum_probs=190.0
Q ss_pred CCCCCCEEEEEcC--CchHHHHHHHHHHHcCCeEEEEecCh--hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGS--SSGIGEQLVKDLVTLGAKVVAVARRI--DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 712 ~~l~~k~~lITGa--s~GIG~aia~~la~~Ga~Vi~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
..++||+++|||| |+|||+++|++|+++|++|++++|+. +.++++.+++. .++.++++|++++++++++++++
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 3 GLLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP---EPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred ccccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC---CCCcEEeCCCCCHHHHHHHHHHH
Confidence 4478999999999 89999999999999999999998764 44566555543 24668899999999999999999
Q ss_pred HHHcCCccEEEEccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC
Q psy4557 788 LAELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~ 863 (958)
.+.+|++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|+|. ++|+||+++|. +..+.|.+
T Consensus 80 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~---~~g~Iv~is~~-~~~~~~~~ 155 (256)
T PRK07889 80 REHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMN---EGGSIVGLDFD-ATVAWPAY 155 (256)
T ss_pred HHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcc---cCceEEEEeec-ccccCCcc
Confidence 9999999999999998643 3567788999999999999999999999999996 24899999876 45667888
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhccc-cCC-CCCCHHHHHHHHHHHhcC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYDIS-KAV-PVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~~~-~~~-~~~~p~~ia~~i~~~l~~ 940 (958)
+.|++||+|+.+|+|+|+.|++++|||||+|+||+|+|+|...... .......... +.. ++.+|+|+|+.++|+++
T Consensus 156 ~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~evA~~v~~l~s- 234 (256)
T PRK07889 156 DWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPLGWDVKDPTPVARAVVALLS- 234 (256)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCccccccCCHHHHHHHHHHHhC-
Confidence 9999999999999999999999999999999999999998653321 1111111111 112 46899999999999765
Q ss_pred CCCccccceEec
Q psy4557 941 PSHSAVNSILIE 952 (958)
Q Consensus 941 ~~~~~i~~~~i~ 952 (958)
+...++++..+.
T Consensus 235 ~~~~~~tG~~i~ 246 (256)
T PRK07889 235 DWFPATTGEIVH 246 (256)
T ss_pred cccccccceEEE
Confidence 545677776654
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=308.72 Aligned_cols=238 Identities=16% Similarity=0.269 Sum_probs=198.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.+++||+++||||++|||+++|++|+++|++|++++| +.+.++++.+++... +.++.++++|++++++++++++++.+
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDE 83 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999875 566777776666543 45688999999999999999999999
Q ss_pred HcCCccEEEEccccCC------CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC
Q psy4557 790 ELGHIDILVNNAGVMY------FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863 (958)
Q Consensus 790 ~~g~iDilInnAG~~~------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~ 863 (958)
.+|++|+||||||+.. ..++.+.+.++|++++++|+.+++.+++.++|.|.+ ++.|+||++||..+..+.|++
T Consensus 84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~ 162 (260)
T PRK08416 84 DFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEK-VGGGSIISLSSTGNLVYIENY 162 (260)
T ss_pred hcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhc-cCCEEEEEEeccccccCCCCc
Confidence 9999999999999752 245667889999999999999999999999999973 446899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
..|++||+|+++|+++|+.|++++|||||+|+||+++|+|...... .+...... ..+..++.+|+|+|..++|+++ +
T Consensus 163 ~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~l~~-~ 241 (260)
T PRK08416 163 AGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELSPLNRMGQPEDLAGACLFLCS-E 241 (260)
T ss_pred ccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC-h
Confidence 9999999999999999999999999999999999999998654322 11111111 1123457899999999999765 4
Q ss_pred CCccccceEe
Q psy4557 942 SHSAVNSILI 951 (958)
Q Consensus 942 ~~~~i~~~~i 951 (958)
...+++|..+
T Consensus 242 ~~~~~~G~~i 251 (260)
T PRK08416 242 KASWLTGQTI 251 (260)
T ss_pred hhhcccCcEE
Confidence 4457776654
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=315.17 Aligned_cols=229 Identities=25% Similarity=0.370 Sum_probs=202.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..+++|+++|||||+|||+++|++|+++|++|++++|+.++++++.+++.+.+.++.++.+|++|.++++++++++.+.+
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999988887777778889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|++|||||+....++.+.+.++|++++++|+.|++++++.++|+|.++ +.|+||++||.++..+.|+.+.|++||+
T Consensus 83 g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~-~~g~iV~isS~~~~~~~p~~~~Y~asKa 161 (330)
T PRK06139 83 GRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQ-GHGIFINMISLGGFAAQPYAAAYSASKF 161 (330)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHc-CCCEEEEEcChhhcCCCCCchhHHHHHH
Confidence 999999999999888888999999999999999999999999999999843 4689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC-CcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 872 FIEGISGALRQEVSDR-NIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 872 a~~~l~~~la~el~~~-gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
|+.+|+++|+.|+.+. ||+|++|+||+++|++....... .........+..+|+++|+.+++++.++...
T Consensus 162 al~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~~---~~~~~~~~~~~~~pe~vA~~il~~~~~~~~~ 232 (330)
T PRK06139 162 GLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANY---TGRRLTPPPPVYDPRRVAKAVVRLADRPRAT 232 (330)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccccc---ccccccCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 9999999999999875 99999999999999986532111 0011112335789999999999998877653
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=304.87 Aligned_cols=238 Identities=26% Similarity=0.366 Sum_probs=201.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh-hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~-~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.+ .++++.+++...+.++..+.+|++++++++++++++.+.+
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999999854 5677777776666678889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC--ChhhhHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG--LAVYTGT 869 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~--~~~Y~as 869 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+ ++.|+||++||.++..+.++ .+.|+++
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~isS~~~~~~~~~~~~~~Y~~s 163 (254)
T PRK06114 85 GALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLE-NGGGSIVNIASMSGIIVNRGLLQAHYNAS 163 (254)
T ss_pred CCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHh-cCCcEEEEECchhhcCCCCCCCcchHHHH
Confidence 99999999999987777888899999999999999999999999999974 44689999999999876654 6889999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
|+|+.+|+++++.|++++|||||+|+||+++|+|.......+....+ ...+..+..+|+|+|..++|+++ +.+.+++|
T Consensus 164 Kaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s-~~~~~~tG 242 (254)
T PRK06114 164 KAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEMVHQTKLFEEQTPMQRMAKVDEMVGPAVFLLS-DAASFCTG 242 (254)
T ss_pred HHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-ccccCcCC
Confidence 99999999999999999999999999999999986532111111111 11223467899999999999765 56678888
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..|.
T Consensus 243 ~~i~ 246 (254)
T PRK06114 243 VDLL 246 (254)
T ss_pred ceEE
Confidence 6653
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=301.63 Aligned_cols=235 Identities=27% Similarity=0.348 Sum_probs=196.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEe-cChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH--
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE-- 790 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~-r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~-- 790 (958)
++||+++||||++|||+++|++|+++|++|+++. |+.+.++++..++...+.++..+.+|+++.+++..+++++.+.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 81 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999875 6677777777777666667788899999999999999888753
Q ss_pred --cC--CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhh
Q psy4557 791 --LG--HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVY 866 (958)
Q Consensus 791 --~g--~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y 866 (958)
+| ++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+ .|+||++||.++..+.++...|
T Consensus 82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~---~g~iv~isS~~~~~~~~~~~~Y 158 (252)
T PRK12747 82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD---NSRIINISSAATRISLPDFIAY 158 (252)
T ss_pred hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhc---CCeEEEECCcccccCCCCchhH
Confidence 34 8999999999876667788899999999999999999999999999962 3899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc--cccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD--ISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~--~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
++||+|+.+|+++|+.|++++|||||+|+||+|.|+|.............. .....++.+|+|+|..++|+++ +...
T Consensus 159 ~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s-~~~~ 237 (252)
T PRK12747 159 SMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSDPMMKQYATTISAFNRLGEVEDIADTAAFLAS-PDSR 237 (252)
T ss_pred HHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccCHHHHHHHHhcCcccCCCCHHHHHHHHHHHcC-cccc
Confidence 999999999999999999999999999999999999865322111111111 1123457899999999999654 6566
Q ss_pred cccceEec
Q psy4557 945 AVNSILIE 952 (958)
Q Consensus 945 ~i~~~~i~ 952 (958)
+++|..+.
T Consensus 238 ~~~G~~i~ 245 (252)
T PRK12747 238 WVTGQLID 245 (252)
T ss_pred CcCCcEEE
Confidence 78876654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=303.66 Aligned_cols=233 Identities=21% Similarity=0.258 Sum_probs=198.1
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
.++||||++|||+++|++|+++|++|++++|+.++++++.+++... +++..+++|+++.++++++++++.+.+|++|+|
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l 80 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY-GEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 6999999999999999999999999999999999998888887654 367789999999999999999999999999999
Q ss_pred EEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 798 VNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 798 InnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
|||||... ...+.+.+.++|.+.+++|+.+++++++.++|.|.+.+++|+||++||.++..+.++...|++||+|+.+
T Consensus 81 i~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~~sKaa~~~ 160 (259)
T PRK08340 81 VWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMPPLVLADVTRAGLVQ 160 (259)
T ss_pred EECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCCCchHHHHHHHHHHH
Confidence 99999854 3356778899999999999999999999999998744557999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----------Chhh-hhhh-ccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----------DRDV-VDKY-DISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----------~~~~-~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|+|+|+.|++++||+||+|+||+++|++..... .++. .... ...+..++.+|+|+|++++|+++ +..
T Consensus 161 ~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~fL~s-~~~ 239 (259)
T PRK08340 161 LAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTPLKRTGRWEELGSLIAFLLS-ENA 239 (259)
T ss_pred HHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCCccCCCCHHHHHHHHHHHcC-ccc
Confidence 999999999999999999999999999864210 0110 0111 11123457899999999999655 667
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..|.
T Consensus 240 ~~itG~~i~ 248 (259)
T PRK08340 240 EYMLGSTIV 248 (259)
T ss_pred ccccCceEe
Confidence 788887664
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=301.04 Aligned_cols=238 Identities=22% Similarity=0.316 Sum_probs=199.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++++. .++..+.+.+.+.++..+++|+++.++++++++++.+.+
T Consensus 6 ~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 6 FSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE--PTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc--hHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 358899999999999999999999999999999887753 234444454445567889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|++|||||+....++.+.+.++|++++++|+.|++.++++++|.|.+++.+|+||++||..+..+.++...|++||+
T Consensus 84 ~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKa 163 (253)
T PRK08993 84 GHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKS 163 (253)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCCCCcchHHHHH
Confidence 99999999999977677888999999999999999999999999999975544689999999999999899999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh-hhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV-VDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~-~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+++|+++++.|+.++||+||+|+||+++|+|.......+. .... ...+..++.+|+|+|..++|+++ +...+++|.
T Consensus 164 a~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~l~s-~~~~~~~G~ 242 (253)
T PRK08993 164 GVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPVVFLAS-SASDYINGY 242 (253)
T ss_pred HHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccCccCc
Confidence 99999999999999999999999999999998653221111 1111 11123467899999999999765 556688886
Q ss_pred Eec
Q psy4557 950 LIE 952 (958)
Q Consensus 950 ~i~ 952 (958)
.+.
T Consensus 243 ~~~ 245 (253)
T PRK08993 243 TIA 245 (253)
T ss_pred EEE
Confidence 653
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=296.81 Aligned_cols=222 Identities=14% Similarity=0.183 Sum_probs=191.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+.++..+.+|++++++++++++++.+.+|
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999998888876666788889999999999999999999999
Q ss_pred -CccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 793 -HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 793 -~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
++|+||||||... ..++.+.+.++|.+++++|+.+++.+++.++|+|.+++.+|+||++||..+. ++++.|++||
T Consensus 82 ~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~---~~~~~Y~asK 158 (227)
T PRK08862 82 RAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH---QDLTGVESSN 158 (227)
T ss_pred CCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC---CCcchhHHHH
Confidence 9999999998643 4567888999999999999999999999999999755446999999997654 5678899999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+|+.+|+|+|+.|++++|||||+|+||+++|+... .++.+... .++++.+..|+++ +.+++|..
T Consensus 159 aal~~~~~~la~el~~~~Irvn~v~PG~i~t~~~~---~~~~~~~~----------~~~~~~~~~~l~~---~~~~tg~~ 222 (227)
T PRK08862 159 ALVSGFTHSWAKELTPFNIRVGGVVPSIFSANGEL---DAVHWAEI----------QDELIRNTEYIVA---NEYFSGRV 222 (227)
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEEecCcCcCCCcc---CHHHHHHH----------HHHHHhheeEEEe---cccccceE
Confidence 99999999999999999999999999999998321 11111111 1899999999775 45888877
Q ss_pred ecC
Q psy4557 951 IEP 953 (958)
Q Consensus 951 i~p 953 (958)
|+.
T Consensus 223 ~~~ 225 (227)
T PRK08862 223 VEA 225 (227)
T ss_pred Eee
Confidence 753
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=327.75 Aligned_cols=278 Identities=22% Similarity=0.296 Sum_probs=204.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcC-CC-CeEEEeccCCChhhHHHHHHHHHHHhccc--------ccc-ccccCceEEe
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVD-TK-CTLFCPVRETPNKTLLQRLEDIMLKYHMS--------LDL-NNYTDRLILV 386 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~-~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~--------~~~-~~~~~ri~~v 386 (958)
++++|||||||||||+||+++||+. ++ .+||||+|+.+...+.+|+...+...... ... ....++++++
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i 89 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV 89 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence 4678999999999999999999975 34 47999999998888888875322111000 000 1113689999
Q ss_pred cccCCCCCCCCCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccC-CCccEEEEecccccCCCC
Q psy4557 387 KSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSIYPSTS 465 (958)
Q Consensus 387 ~gDl~~~~lGL~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v~~~~~ 465 (958)
.||+++++|||++.+.+..+.+++|+|||+||.+++..++.....+||.||.+|+++|... ++++|+|+||.+|||...
T Consensus 90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG~~~ 169 (491)
T PLN02996 90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGEKS 169 (491)
T ss_pred ecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEecCCC
Confidence 9999999999988555777888999999999999998889899999999999999999874 678999999999998643
Q ss_pred CCCcccccc-cC------------------------------------------cCC--CCCCCCChhHHHHHHHHHHHH
Q psy4557 466 ENFQEDYTV-AD------------------------------------------FDD--FMTTTSGYGQSKIVSEYLVLN 500 (958)
Q Consensus 466 ~~~~e~~~~-~~------------------------------------------~~~--~~~~~~gY~~SK~~aE~lv~~ 500 (958)
....|..-+ .. ..+ .....|.|+.||++||+++..
T Consensus 170 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~lv~~ 249 (491)
T PLN02996 170 GLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEMLLGN 249 (491)
T ss_pred ceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHHHHHH
Confidence 221111000 00 000 122457899999999999976
Q ss_pred HhhCCCCEEEEecCceeccCCCCC--cC-hhHHHHHHHHHHHHhCCc----CCCCCcCCcccHHHHHHHHHHHhcCc--C
Q psy4557 501 AGQMGLPVSIVRCGNIGGSLEFKN--WN-LVDLNLYILKAITRLGYA----PDIDWYLEFTPVDFLTKSLVQLTTNV--N 571 (958)
Q Consensus 501 a~~~glp~~I~R~g~i~G~~~~g~--~n-~~d~~~~l~~~~~~~g~~----P~~~~~~~~~pVD~va~aiv~l~~~~--~ 571 (958)
.. .|+|++|+||++|+|+.+... |- .......++..+. .|.. .+.+...|++|||+++++++.++... .
T Consensus 250 ~~-~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~-~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~~~~ 327 (491)
T PLN02996 250 FK-ENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYG-KGKLTCFLADPNSVLDVIPADMVVNAMIVAMAAHAGG 327 (491)
T ss_pred hc-CCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhc-cceEeEEecCCCeecceecccHHHHHHHHHHHHhhcc
Confidence 54 499999999999999987543 31 1112223332222 2322 23456799999999999999887642 1
Q ss_pred -CCCceEEecCC--CCCCHHHHHHHHHHc
Q psy4557 572 -NANKIYNFINT--NPIHIKTLVSVLNTY 597 (958)
Q Consensus 572 -~~~~v~h~~n~--~~~~~~~l~~~l~~~ 597 (958)
..+.+||+++. ++++|.++.+.+.+.
T Consensus 328 ~~~~~vYNi~s~~~~~~s~~ei~~~~~~~ 356 (491)
T PLN02996 328 QGSEIIYHVGSSLKNPVKFSNLHDFAYRY 356 (491)
T ss_pred CCCCcEEEecCCCCCcccHHHHHHHHHHH
Confidence 24679999987 899999999988653
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=308.08 Aligned_cols=237 Identities=19% Similarity=0.255 Sum_probs=180.3
Q ss_pred cCCCCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhh----------cCCC-----cEEEEEe
Q psy4557 710 FGNTLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ----------NAPG-----SIIVKKL 772 (958)
Q Consensus 710 ~~~~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~----------~~~~-----~~~~~~~ 772 (958)
+...++||+++||||+ +|||+++|+.|+++|++|++.++. ..++....... ..+. ++..+.+
T Consensus 2 ~~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (299)
T PRK06300 2 LKIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWV-PIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDA 80 (299)
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEecc-chhhhhhhhcccccccccccccccchhhhhhHHHhhh
Confidence 4567899999999996 999999999999999999997654 21111111110 0000 0111223
Q ss_pred cCCCH------------------HHHHHHHHHHHHHcCCccEEEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHH
Q psy4557 773 DVTIE------------------NDVKKVVREVLAELGHIDILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCI 832 (958)
Q Consensus 773 Dvs~~------------------~~v~~~~~~~~~~~g~iDilInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~ 832 (958)
|+++. ++++++++++.+.||++|+||||||... ..++.+++.++|++++++|+.|+++++
T Consensus 81 d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~ 160 (299)
T PRK06300 81 SFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLL 160 (299)
T ss_pred hcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHH
Confidence 33333 4689999999999999999999999754 467889999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEecCccCcCCCCCCh-hhhHHHHHHHHHHHHHHHHhCC-CCcEEEEEECCcccCCCCCCCCC-
Q psy4557 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLA-VYTGTKYFIEGISGALRQEVSD-RNIKVTCIQAGDVKTELLSHSTD- 909 (958)
Q Consensus 833 ~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~-~Y~asKaa~~~l~~~la~el~~-~gIrv~~v~PG~v~T~~~~~~~~- 909 (958)
|+++|+|. . .|+||+++|+++..+.|++. .|++||+|+.+|+|+|+.|+++ +|||||+|+||+++|+|......
T Consensus 161 ~a~~p~m~-~--~G~ii~iss~~~~~~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~~~~~~ 237 (299)
T PRK06300 161 SHFGPIMN-P--GGSTISLTYLASMRAVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGKAIGFI 237 (299)
T ss_pred HHHHHHhh-c--CCeEEEEeehhhcCcCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhhccccc
Confidence 99999996 2 48999999999999888875 8999999999999999999987 59999999999999998643211
Q ss_pred hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 910 RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 910 ~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
+...... ......+..+|++++..++|+++ +...++++..+
T Consensus 238 ~~~~~~~~~~~p~~r~~~peevA~~v~~L~s-~~~~~itG~~i 279 (299)
T PRK06300 238 ERMVDYYQDWAPLPEPMEAEQVGAAAAFLVS-PLASAITGETL 279 (299)
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccCCCCCEE
Confidence 1111111 11123456799999999999765 55567777554
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=299.94 Aligned_cols=233 Identities=24% Similarity=0.289 Sum_probs=196.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++++++++++++++.+.+|
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999999999999988888777665 34678899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||...... .+.+.++|++++++|+.|++++++.++|.|. ++.|+||++||.++..+.++...|+++|+|
T Consensus 80 ~id~lv~~ag~~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~g~ii~isS~~~~~~~~~~~~Y~asKaa 156 (261)
T PRK08265 80 RVDILVNLACTYLDDG-LASSRADWLAALDVNLVSAAMLAQAAHPHLA--RGGGAIVNFTSISAKFAQTGRWLYPASKAA 156 (261)
T ss_pred CCCEEEECCCCCCCCc-CcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh--cCCcEEEEECchhhccCCCCCchhHHHHHH
Confidence 9999999999865433 3568899999999999999999999999996 346899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhhhhhhc--cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDVVDKYD--ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~~~--~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+.+|+++++.|++++||+||+|+||+++|+|...... ........ .....++.+|+|+|..++|+++ +...+++|
T Consensus 157 ~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~l~s-~~~~~~tG 235 (261)
T PRK08265 157 IRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAPFHLLGRVGDPEEVAQVVAFLCS-DAASFVTG 235 (261)
T ss_pred HHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhcccCCCCCccCHHHHHHHHHHHcC-ccccCccC
Confidence 9999999999999999999999999999998643221 11111111 1123457899999999999765 44567777
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..+.
T Consensus 236 ~~i~ 239 (261)
T PRK08265 236 ADYA 239 (261)
T ss_pred cEEE
Confidence 6543
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=298.09 Aligned_cols=237 Identities=25% Similarity=0.343 Sum_probs=204.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++..+.+|++++++++++++.+.+.++
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999999999999999988888888876666778889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....++.+.+.++|++++++|+.|++.+++.+++.|.+ ++.|+||++||..+..+.++.+.|+++|+|
T Consensus 86 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a 164 (254)
T PRK08085 86 PIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVK-RQAGKIINICSMQSELGRDTITPYAASKGA 164 (254)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCcEEEEEccchhccCCCCCcchHHHHHH
Confidence 9999999999877677888899999999999999999999999999974 346899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+.+++++++.|++++||+||+|+||+++|++...... +....... ..+..+..+|+|+|..++|+++ +...+++|..
T Consensus 165 ~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~~-~~~~~i~G~~ 243 (254)
T PRK08085 165 VKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSS-KASDFVNGHL 243 (254)
T ss_pred HHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccCCcCCE
Confidence 9999999999999999999999999999998654221 11111111 1123457899999999999765 5566787765
Q ss_pred e
Q psy4557 951 I 951 (958)
Q Consensus 951 i 951 (958)
|
T Consensus 244 i 244 (254)
T PRK08085 244 L 244 (254)
T ss_pred E
Confidence 4
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=301.77 Aligned_cols=230 Identities=25% Similarity=0.352 Sum_probs=199.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.++||+++||||++|||+++|++|+++|++|++++|+.+.++++.+++...+.++.++.+|+++.+++.++++++.+.+|
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999989888888876666788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+.+.+|+||++||.++..+.++.+.|++||+|
T Consensus 83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a 162 (275)
T PRK05876 83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGAYGVAKYG 162 (275)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCCCCCchHHHHHHH
Confidence 99999999999877788899999999999999999999999999999755446899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh----h----hhhc-cccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV----V----DKYD-ISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~----~----~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+.+|+++|+.|++++||+|++|+||+++|++......... . .... .......++|+++|+.++..+..+.
T Consensus 163 ~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ai~~~~ 241 (275)
T PRK05876 163 VVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILANR 241 (275)
T ss_pred HHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhhcCccccccccccccccccccccCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999998643211000 0 0000 0111235799999999999887664
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=303.62 Aligned_cols=236 Identities=19% Similarity=0.271 Sum_probs=197.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh--hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI--DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+. +.++++.+.+...+.++.++.+|+++.+++.++++++.+
T Consensus 45 ~~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999988653 456666666655566788899999999999999999999
Q ss_pred HcCCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 790 ELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 790 ~~g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
.+|++|++|||||... ..++.+.+.++|++++++|+.|+++++++++|+|. . .|+||++||.++..+.++...|++
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~-~--~g~iv~iSS~~~~~~~~~~~~Y~a 201 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLP-K--GASIITTSSIQAYQPSPHLLDYAA 201 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhh-c--CCEEEEECCchhccCCCCcchhHH
Confidence 9999999999999753 45677889999999999999999999999999985 2 489999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
||+|+.+|+++++.|++++|||||+|+||+|+|+|..... ..+....+. .....+..+|+|+|.+++|+++ +...++
T Consensus 202 sKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~r~~~pedva~~~~fL~s-~~~~~i 280 (294)
T PRK07985 202 TKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLAS-QESSYV 280 (294)
T ss_pred HHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC-hhcCCc
Confidence 9999999999999999999999999999999999853221 111111121 1122357899999999999765 555677
Q ss_pred cceEe
Q psy4557 947 NSILI 951 (958)
Q Consensus 947 ~~~~i 951 (958)
++..+
T Consensus 281 tG~~i 285 (294)
T PRK07985 281 TAEVH 285 (294)
T ss_pred cccEE
Confidence 77655
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=297.30 Aligned_cols=237 Identities=26% Similarity=0.403 Sum_probs=202.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+ ++++++.+.+.+.+.++.++.+|+++.++++++++++.+.+|
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999998 667777777765566788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....++.+.+.++|++++++|+.|++.+++.++|+|.+ ++.|+||++||..+..+.++++.|+++|+|
T Consensus 91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~Y~asK~a 169 (258)
T PRK06935 91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAK-QGSGKIINIASMLSFQGGKFVPAYTASKHG 169 (258)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHh-cCCeEEEEECCHHhccCCCCchhhHHHHHH
Confidence 9999999999877677788899999999999999999999999999974 446899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhh-hccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDK-YDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~-~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+++|+++++.|++++||+||+|+||+++|++...... +..... .......++.+|+|+|..+.|+++ +...+++|..
T Consensus 170 ~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s-~~~~~~~G~~ 248 (258)
T PRK06935 170 VAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKRIPAGRWGEPDDLMGAAVFLAS-RASDYVNGHI 248 (258)
T ss_pred HHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC-hhhcCCCCCE
Confidence 9999999999999999999999999999998643221 111111 111223467899999999999765 5556788765
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
+.
T Consensus 249 i~ 250 (258)
T PRK06935 249 LA 250 (258)
T ss_pred EE
Confidence 53
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=296.83 Aligned_cols=214 Identities=18% Similarity=0.229 Sum_probs=188.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCC-cEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
|+++||||++|||+++|++|+ +|++|++++|+.++++++.+++.+.+. .+.+++||++|.++++++++++.+.+|++|
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 579999999999999999999 599999999999999999888876554 477889999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
++|||||+.......+.+.+.+.+++++|+.+++++++.++|.|.++..+|+|||+||.++..+.+++..|++||+|+.+
T Consensus 80 ~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~ 159 (246)
T PRK05599 80 LAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRARRANYVYGSTKAGLDA 159 (246)
T ss_pred EEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCCcCCcchhhHHHHHHH
Confidence 99999998765556667778899999999999999999999999754346899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
|+++|+.|++++||+||+|+||+|+|+|...... .....+|+++|+.+++++.++.
T Consensus 160 ~~~~la~el~~~~I~v~~v~PG~v~T~~~~~~~~-----------~~~~~~pe~~a~~~~~~~~~~~ 215 (246)
T PRK05599 160 FCQGLADSLHGSHVRLIIARPGFVIGSMTTGMKP-----------APMSVYPRDVAAAVVSAITSSK 215 (246)
T ss_pred HHHHHHHHhcCCCceEEEecCCcccchhhcCCCC-----------CCCCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998543210 0013589999999999888754
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=300.78 Aligned_cols=238 Identities=20% Similarity=0.251 Sum_probs=199.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh--hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID--RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~--~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
...++||++|||||++|||+++|++|+++|++|++++++.+ ..+++.+.+...+.++.++.+|+++.++++++++++.
T Consensus 50 ~~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 50 FGRLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred ccccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999887643 4566666666666678889999999999999999999
Q ss_pred HHcCCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhh
Q psy4557 789 AELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
+.+|++|+||||||... ..++.+.+.++|++++++|+.|+++++++++|+|. .+|+||++||..+..+.+++..|+
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~---~~~~iv~~sS~~~~~~~~~~~~Y~ 206 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLP---PGASIINTGSIQSYQPSPTLLDYA 206 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcC---cCCEEEEECCccccCCCCCchhHH
Confidence 99999999999999863 45678889999999999999999999999999985 247999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
+||+|+++|+++|+.|+.++||+||+|+||+++|+|..... ..+....+. .....++.+|+|+|..++|+++ +...+
T Consensus 207 asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~l~s-~~~~~ 285 (300)
T PRK06128 207 STKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSETPMKRPGQPVEMAPLYVLLAS-QESSY 285 (300)
T ss_pred HHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhC-ccccC
Confidence 99999999999999999999999999999999999864321 122222222 1223467899999999999765 44557
Q ss_pred ccceEec
Q psy4557 946 VNSILIE 952 (958)
Q Consensus 946 i~~~~i~ 952 (958)
++|..+.
T Consensus 286 ~~G~~~~ 292 (300)
T PRK06128 286 VTGEVFG 292 (300)
T ss_pred ccCcEEe
Confidence 7775554
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=296.11 Aligned_cols=239 Identities=23% Similarity=0.321 Sum_probs=203.8
Q ss_pred CCCCCCEEEEEcCC-chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-CC-CcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSS-SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-AP-GSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 712 ~~l~~k~~lITGas-~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-~~-~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
..+++|+++||||+ +|||+++|+.|+++|++|++++|+.+++++..+++.+ .+ .++..+++|++++++++++++++.
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 45678999999998 5999999999999999999999999888888777754 23 357788999999999999999999
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
+.+|++|+||||||......+.+.+.++|++++++|+.|++.+++.++|.|......|+||+++|..+..+.++...|++
T Consensus 93 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~ 172 (262)
T PRK07831 93 ERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQHGQAHYAA 172 (262)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCCcchHH
Confidence 99999999999999877777888899999999999999999999999999975443689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
+|+|+++|+++++.|++++|||||+|+||+++|++.......+...... .....+..+|+|+|+.++|+++ +...+++
T Consensus 173 sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~l~s-~~~~~it 251 (262)
T PRK07831 173 AKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVTSAELLDELAAREAFGRAAEPWEVANVIAFLAS-DYSSYLT 251 (262)
T ss_pred HHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-chhcCcC
Confidence 9999999999999999999999999999999999865432222222221 1123467899999999999665 5556788
Q ss_pred ceEe
Q psy4557 948 SILI 951 (958)
Q Consensus 948 ~~~i 951 (958)
|..+
T Consensus 252 G~~i 255 (262)
T PRK07831 252 GEVV 255 (262)
T ss_pred CceE
Confidence 7765
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=299.60 Aligned_cols=239 Identities=23% Similarity=0.317 Sum_probs=202.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|+++||||++|||+++|++|+++|++|++++|+.+.++++.+++...+.++.++++|+++++++.++++++.+.+|
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999888888888876666788899999999999999999999999
Q ss_pred CccEEEEccccCCC---------------ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc
Q psy4557 793 HIDILVNNAGVMYF---------------TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV 857 (958)
Q Consensus 793 ~iDilInnAG~~~~---------------~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~ 857 (958)
++|++|||||.... .++.+.+.++|++++++|+.+++++++.++|.|.+ ++.|+||++||.++.
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~g~ii~isS~~~~ 165 (278)
T PRK08277 87 PCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVG-RKGGNIINISSMNAF 165 (278)
T ss_pred CCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-cCCcEEEEEccchhc
Confidence 99999999997532 23567889999999999999999999999999974 346899999999999
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC------hhhhhhh-ccccCCCCCCHHHH
Q psy4557 858 RPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD------RDVVDKY-DISKAVPVLTTKEI 930 (958)
Q Consensus 858 ~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~------~~~~~~~-~~~~~~~~~~p~~i 930 (958)
.+.++...|++||+|+++|+|+++.|++++|||||+|+||+|.|++...... ....... ......++.+|+|+
T Consensus 166 ~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dv 245 (278)
T PRK08277 166 TPLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKILAHTPMGRFGKPEEL 245 (278)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHHhccCCccCCCCHHHH
Confidence 9999999999999999999999999999999999999999999997543210 0111111 11123467899999
Q ss_pred HHHHHHHhcCCCCccccceEec
Q psy4557 931 SQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 931 a~~i~~~l~~~~~~~i~~~~i~ 952 (958)
|.+++|+++.+...+++|..|.
T Consensus 246 a~~~~~l~s~~~~~~~tG~~i~ 267 (278)
T PRK08277 246 LGTLLWLADEKASSFVTGVVLP 267 (278)
T ss_pred HHHHHHHcCccccCCcCCCEEE
Confidence 9999996654267788886653
|
|
| >KOG1207|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=272.34 Aligned_cols=231 Identities=27% Similarity=0.371 Sum_probs=196.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
-++.|+++++||++.|||++++++|++.|+.|+.++|+++.+..+.++- ..-+..++.|+++++.+.++ ....
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~---p~~I~Pi~~Dls~wea~~~~----l~~v 75 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKET---PSLIIPIVGDLSAWEALFKL----LVPV 75 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhC---CcceeeeEecccHHHHHHHh----hccc
Confidence 4679999999999999999999999999999999999999998887654 34478899999987765443 3355
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+.+|.||||||+....+|.+.+.+.|++.|++|+.+++.++|.+...+...+.+|.|||+||.++.+++.++.+||++|+
T Consensus 76 ~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~nHtvYcatKa 155 (245)
T KOG1207|consen 76 FPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPLDNHTVYCATKA 155 (245)
T ss_pred CchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccccCCceEEeecHH
Confidence 78999999999999999999999999999999999999999998887876666899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCC-CCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSH-STDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~-~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+.+++|+||.|+++++||||+|.|..|.|.|... +.+++..... +-.+..++.+.+++..++.|+|++. ++..+|.
T Consensus 156 ALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~K~k~mL~riPl~rFaEV~eVVnA~lfLLSd~-ssmttGs 234 (245)
T KOG1207|consen 156 ALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLDRIPLKRFAEVDEVVNAVLFLLSDN-SSMTTGS 234 (245)
T ss_pred HHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCchhccchhhhCchhhhhHHHHHHhhheeeeecC-cCcccCc
Confidence 99999999999999999999999999999999765 3443322221 2223346789999999999977644 4455554
Q ss_pred E
Q psy4557 950 L 950 (958)
Q Consensus 950 ~ 950 (958)
.
T Consensus 235 t 235 (245)
T KOG1207|consen 235 T 235 (245)
T ss_pred e
Confidence 3
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=302.88 Aligned_cols=228 Identities=25% Similarity=0.385 Sum_probs=197.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..++||+++||||++|||+++|+.|+++|++|++++|+.++++++.+++.. +..+..+++|+++.++++++++++.+.+
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 457899999999999999999999999999999999999999888887753 3456777899999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|++|||||+....++.+.+.++|++++++|+.|++++++.++|.|.+ ..|+||++||.++..+.++...|++||+
T Consensus 84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~--~~g~iv~isS~~~~~~~~~~~~Y~asKa 161 (296)
T PRK05872 84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIE--RRGYVLQVSSLAAFAAAPGMAAYCASKA 161 (296)
T ss_pred CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH--cCCEEEEEeCHhhcCCCCCchHHHHHHH
Confidence 99999999999987778889999999999999999999999999999974 2489999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh-hhhhhhc--c-ccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR-DVVDKYD--I-SKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~-~~~~~~~--~-~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
++++|+++|+.|++++||+||+|+||+++|+|....... ....... . ....+..+|+++|+.+++++....
T Consensus 162 al~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~i~~~~~~~~ 236 (296)
T PRK05872 162 GVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPWPLRRTTSVEKCAAAFVDGIERRA 236 (296)
T ss_pred HHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCCCcccCCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999986543221 1111111 1 122356899999999999876543
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=296.39 Aligned_cols=225 Identities=27% Similarity=0.425 Sum_probs=190.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.++||+++||||++|||+++|++|+++|++|++++|+.+.. .++..+++|++++++++++++++.+.+|
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~-----------~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 71 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY-----------NDVDYFKVDVSNKEQVIKGIDYVISKYG 71 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc-----------CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999985421 2477889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|+|.+ ++.|+||++||.++..+.+++..|++||+|
T Consensus 72 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa 150 (258)
T PRK06398 72 RIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLK-QDKGVIINIASVQSFAVTRNAAAYVTSKHA 150 (258)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCeEEEEeCcchhccCCCCCchhhhhHHH
Confidence 9999999999987778888999999999999999999999999999974 346899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC------Chhhh----hhh-ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST------DRDVV----DKY-DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~------~~~~~----~~~-~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+++|+|+++.|+++. |+||+|+||+++|+|..... .+... ..+ ......+..+|+|+|..++|+++ +
T Consensus 151 l~~~~~~la~e~~~~-i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~l~s-~ 228 (258)
T PRK06398 151 VLGLTRSIAVDYAPT-IRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWGEMHPMKRVGKPEEVAYVVAFLAS-D 228 (258)
T ss_pred HHHHHHHHHHHhCCC-CEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhhhcCCcCCCcCHHHHHHHHHHHcC-c
Confidence 999999999999876 99999999999999864321 11110 011 11122356799999999999765 5
Q ss_pred CCccccceEe
Q psy4557 942 SHSAVNSILI 951 (958)
Q Consensus 942 ~~~~i~~~~i 951 (958)
...+++|..+
T Consensus 229 ~~~~~~G~~i 238 (258)
T PRK06398 229 LASFITGECV 238 (258)
T ss_pred ccCCCCCcEE
Confidence 4556777654
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=291.68 Aligned_cols=235 Identities=24% Similarity=0.376 Sum_probs=197.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
||+++||||++|||+++|+.|+++|++|++++|+.++++++.+++...+.++.++++|++++++++++++++.+.++++|
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID 80 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 68999999999999999999999999999999999888888877765556788899999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
++|||||.....++.+.+.++|++++++|+.|+++++++++|+|.+.+.+|+||++||..+..+.++...|++||+|+.+
T Consensus 81 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sKaa~~~ 160 (252)
T PRK07677 81 ALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLA 160 (252)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCCCCcchHHHHHHHHH
Confidence 99999998666677888999999999999999999999999999754446999999999999988899999999999999
Q ss_pred HHHHHHHHhCC-CCcEEEEEECCcccCCC-CCCC-CChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 876 ISGALRQEVSD-RNIKVTCIQAGDVKTEL-LSHS-TDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 876 l~~~la~el~~-~gIrv~~v~PG~v~T~~-~~~~-~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
|+++|+.|+++ +||+||+|+||+++|+. .... ..++...... .....++.+|+++|..+.++++ +...+++|..+
T Consensus 161 ~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~-~~~~~~~g~~~ 239 (252)
T PRK07677 161 MTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVPLGRLGTPEEIAGLAYFLLS-DEAAYINGTCI 239 (252)
T ss_pred HHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCCCCCCCCHHHHHHHHHHHcC-ccccccCCCEE
Confidence 99999999975 69999999999999643 2211 1111111111 1122357899999999999765 44567877554
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=292.17 Aligned_cols=239 Identities=24% Similarity=0.371 Sum_probs=204.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..+++|+++||||++|||+++|++|+++|++|++++|+.++++++.+.+.+.+.++..+++|+++.+++.++++++.+.+
T Consensus 3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999998888888887666778899999999999999999999999
Q ss_pred CCccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
|++|++|||||.... .++.+.+.++|++++++|+.+++.+++.++|.|.+ +..|+||++||..+..+.+++..|++||
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~ii~~sS~~~~~~~~~~~~Y~~sK 161 (253)
T PRK06172 83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLA-QGGGAIVNTASVAGLGAAPKMSIYAASK 161 (253)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCcEEEEECchhhccCCCCCchhHHHH
Confidence 999999999998643 34678899999999999999999999999999974 3458999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
+|+++|+++++.|+.++||+|++|+||+|+|++...... +.....+. .....+..+|++++..++|+++.. ..+++
T Consensus 162 aa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~~~~l~~~~-~~~~~ 240 (253)
T PRK06172 162 HAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHPVGRIGKVEEVASAVLYLCSDG-ASFTT 240 (253)
T ss_pred HHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccCCCCCccCHHHHHHHHHHHhCcc-ccCcC
Confidence 999999999999999999999999999999998764321 11111111 112345789999999999976544 46788
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..|.
T Consensus 241 G~~i~ 245 (253)
T PRK06172 241 GHALM 245 (253)
T ss_pred CcEEE
Confidence 86653
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=292.08 Aligned_cols=235 Identities=27% Similarity=0.403 Sum_probs=201.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+++||||++|||+++|+.|+++|++|++++|+.++++++..++...+.++.++++|++++++++++++++.+.+|++|
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 81 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN 81 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 78999999999999999999999999999999999988888888876666788899999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
++|||||+....++.+.+.++|++++++|+.|++++++.+++.|.+.+..|+||++||..+..+.++...|+++|+++++
T Consensus 82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~ 161 (256)
T PRK08643 82 VVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNPELAVYSSTKFAVRG 161 (256)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCCCCchhHHHHHHHHH
Confidence 99999998777778888999999999999999999999999999754446899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--------hhh--hhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--------RDV--VDKY-DISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--------~~~--~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
|+++++.|+.++||+||+|+||+++|++...... ++. ...+ ......++.+|+++|..+.|+++ +...
T Consensus 162 ~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~L~~-~~~~ 240 (256)
T PRK08643 162 LTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDITLGRLSEPEDVANCVSFLAG-PDSD 240 (256)
T ss_pred HHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccCCCCCCcCHHHHHHHHHHHhC-cccc
Confidence 9999999999999999999999999998643110 000 0111 11123356799999999999765 4555
Q ss_pred cccceEe
Q psy4557 945 AVNSILI 951 (958)
Q Consensus 945 ~i~~~~i 951 (958)
+++|..+
T Consensus 241 ~~~G~~i 247 (256)
T PRK08643 241 YITGQTI 247 (256)
T ss_pred CccCcEE
Confidence 6766554
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=291.55 Aligned_cols=239 Identities=25% Similarity=0.375 Sum_probs=202.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..+++|+++||||++|||+++|++|+++|++|++++|+ .+.++++.+++...+.++.++.+|+++.++++++++.+.+.
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999885 45566677777665667888999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
++++|++|||||.....++.+.+.+.|++++++|+.|++.+++.++|+|.+.+..|+||++||..+..+.++...|+++|
T Consensus 83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK 162 (261)
T PRK08936 83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPWPLFVHYAASK 162 (261)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCCCCCcccHHHH
Confidence 99999999999988777778889999999999999999999999999998655468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-CChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-TDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+|+.+|+++|+.|+.+.||+||+|+||+|+|++.... ..++..... ......+..+|+|+++.++|++++ ...+++|
T Consensus 163 aa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~-~~~~~~G 241 (261)
T PRK08936 163 GGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMIPMGYIGKPEEIAAVAAWLASS-EASYVTG 241 (261)
T ss_pred HHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-ccCCccC
Confidence 9999999999999999999999999999999986432 122211111 112234578999999999997664 4556776
Q ss_pred eEe
Q psy4557 949 ILI 951 (958)
Q Consensus 949 ~~i 951 (958)
..+
T Consensus 242 ~~i 244 (261)
T PRK08936 242 ITL 244 (261)
T ss_pred cEE
Confidence 543
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=296.03 Aligned_cols=239 Identities=27% Similarity=0.396 Sum_probs=198.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
...++||+++||||++|||+++|++|+++|++|++++|+.+..+++.+++.. +.++.++++|+++.++++++++.+.+.
T Consensus 13 ~~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 13 SQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG-EPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999998877777776642 346888999999999999999999999
Q ss_pred cCCccEEEEccccCCC--ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 791 LGHIDILVNNAGVMYF--TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 791 ~g~iDilInnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
+|++|+||||||.... ..+.+.+.++|++++++|+.|+++++++++|.|.+ +..|+||+++|.++..+.++...|++
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~g~ii~isS~~~~~~~~~~~~Y~~ 170 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIP-LKKGSIVSLCSVASAIGGLGPHAYTG 170 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHh-cCCceEEEecChhhcccCCCCcccHH
Confidence 9999999999998642 35778899999999999999999999999999974 34689999999999988888899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Ch----hhhhhh----c--cccCCCCCCHHHHHHHHHHH
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DR----DVVDKY----D--ISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~----~~~~~~----~--~~~~~~~~~p~~ia~~i~~~ 937 (958)
||+|+++|+++++.|++++||+||+|+||++.|++..... .. ...... . ........+|+|+|.+++|+
T Consensus 171 sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~dva~~~~~l 250 (280)
T PLN02253 171 SKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNANLKGVELTVDDVANAVLFL 250 (280)
T ss_pred HHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCCCcCCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999999999753211 10 000000 0 00112347899999999997
Q ss_pred hcCCCCccccceEec
Q psy4557 938 LLQPSHSAVNSILIE 952 (958)
Q Consensus 938 l~~~~~~~i~~~~i~ 952 (958)
++ +...++++..+.
T Consensus 251 ~s-~~~~~i~G~~i~ 264 (280)
T PLN02253 251 AS-DEARYISGLNLM 264 (280)
T ss_pred cC-cccccccCcEEE
Confidence 65 555677776553
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=295.17 Aligned_cols=234 Identities=25% Similarity=0.388 Sum_probs=194.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.++||+++||||++|||+++|++|+++|++|++++|+.++++++.+.+ +.++.++++|+++.++++++++++.+.+|
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---GDHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 368999999999999999999999999999999999998888776655 23577889999999999999999999999
Q ss_pred CccEEEEccccCC-CccccCCCHHH----HHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhh
Q psy4557 793 HIDILVNNAGVMY-FTLMEKYKLEE----WNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 793 ~iDilInnAG~~~-~~~~~~~~~~~----~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
++|+||||||+.. ..++.+.+.++ |++++++|+.|++.+++.++|.|.+ .+|+||++||.++..+.++...|+
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~g~iv~~sS~~~~~~~~~~~~Y~ 157 (263)
T PRK06200 80 KLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKA--SGGSMIFTLSNSSFYPGGGGPLYT 157 (263)
T ss_pred CCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHh--cCCEEEEECChhhcCCCCCCchhH
Confidence 9999999999864 34555666665 9999999999999999999999863 248999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC----------hhhhhhhc-cccCCCCCCHHHHHHHHHH
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD----------RDVVDKYD-ISKAVPVLTTKEISQSIIF 936 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~----------~~~~~~~~-~~~~~~~~~p~~ia~~i~~ 936 (958)
+||+|+.+|+++|+.|+++. ||||+|+||+|+|+|...... +...+... ..+..+..+|+|+|..++|
T Consensus 158 ~sK~a~~~~~~~la~el~~~-Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~f 236 (263)
T PRK06200 158 ASKHAVVGLVRQLAYELAPK-IRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAITPLQFAPQPEDHTGPYVL 236 (263)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcCCCCCCCCCHHHHhhhhhh
Confidence 99999999999999999885 999999999999998642110 00111111 1123467899999999999
Q ss_pred HhcCCCCccccceEec
Q psy4557 937 ALLQPSHSAVNSILIE 952 (958)
Q Consensus 937 ~l~~~~~~~i~~~~i~ 952 (958)
+++.+...+++|..+.
T Consensus 237 l~s~~~~~~itG~~i~ 252 (263)
T PRK06200 237 LASRRNSRALTGVVIN 252 (263)
T ss_pred eecccccCcccceEEE
Confidence 7764426788877664
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=291.22 Aligned_cols=235 Identities=25% Similarity=0.312 Sum_probs=198.3
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecC-----------hhhHHHHHHHhhcCCCcEEEEEecCCCHH
Q psy4557 712 NTLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARR-----------IDRLENLKTSLQNAPGSIIVKKLDVTIEN 778 (958)
Q Consensus 712 ~~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~-----------~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~ 778 (958)
+.++||+++||||+ +|||+++|++|+++|++|++++|+ .+.+.++.+++...+.++.++++|+++.+
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~ 81 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQND 81 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 46899999999999 599999999999999999998643 23344556666666677888999999999
Q ss_pred HHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC
Q psy4557 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR 858 (958)
Q Consensus 779 ~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~ 858 (958)
+++++++++.+.+|++|++|||||.....++.+.+.++|++++++|+.|++++++.++|.|.+ +..|+||++||.++..
T Consensus 82 ~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~ 160 (256)
T PRK12859 82 APKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDK-KSGGRIINMTSGQFQG 160 (256)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh-cCCeEEEEEcccccCC
Confidence 999999999999999999999999877677889999999999999999999999999999974 4468999999999999
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHH
Q psy4557 859 PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 859 ~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~ 937 (958)
+.+++..|++||+|+.+|+++++.|++++||+||+|+||+++|++... ...... ......+..+|+|+|+.++|+
T Consensus 161 ~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~----~~~~~~~~~~~~~~~~~~~d~a~~~~~l 236 (256)
T PRK12859 161 PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE----EIKQGLLPMFPFGRIGEPKDAARLIKFL 236 (256)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH----HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997432 111111 111223467899999999997
Q ss_pred hcCCCCccccceEec
Q psy4557 938 LLQPSHSAVNSILIE 952 (958)
Q Consensus 938 l~~~~~~~i~~~~i~ 952 (958)
++ +...+++|..+.
T Consensus 237 ~s-~~~~~~~G~~i~ 250 (256)
T PRK12859 237 AS-EEAEWITGQIIH 250 (256)
T ss_pred hC-ccccCccCcEEE
Confidence 65 455688886654
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=289.98 Aligned_cols=238 Identities=22% Similarity=0.307 Sum_probs=203.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||++++++|+++|++|++++|+.++++++.+++.+.+.+...+.+|+++.++++++++++.+.++
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999999999888888888876666778899999999999999999999999
Q ss_pred CccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 793 HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 793 ~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
++|++|||||... ..++.+.+.++|++++++|+.|+++++++++|+|.+ +..|+||++||..+..+.++++.|++||+
T Consensus 85 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~ 163 (252)
T PRK07035 85 RLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKE-QGGGSIVNVASVNGVSPGDFQGIYSITKA 163 (252)
T ss_pred CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-CCCcEEEEECchhhcCCCCCCcchHHHHH
Confidence 9999999999753 355677899999999999999999999999999974 44689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh-hhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR-DVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~-~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
++++|+++++.|++++||+||+|+||+|+|+|....... ...+.. ......+..+|+|+|+.++|++++ ...+++|.
T Consensus 164 al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~ 242 (252)
T PRK07035 164 AVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIPLRRHAEPSEMAGAVLYLASD-ASSYTTGE 242 (252)
T ss_pred HHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccCCCCCcCCHHHHHHHHHHHhCc-cccCccCC
Confidence 999999999999999999999999999999986543221 111111 111234578999999999996654 45577776
Q ss_pred Eec
Q psy4557 950 LIE 952 (958)
Q Consensus 950 ~i~ 952 (958)
.+.
T Consensus 243 ~~~ 245 (252)
T PRK07035 243 CLN 245 (252)
T ss_pred EEE
Confidence 554
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-32 Score=289.71 Aligned_cols=236 Identities=25% Similarity=0.364 Sum_probs=197.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||.++|++|+++|++|++++|+. .+++.+.+...+.++.++.+|+++.+++.++++++.+.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999975 3445555555556788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||......+.+.+.++|++++++|+.|++.++++++|.|.+++..|+||++||..+..+.++...|++||+|
T Consensus 80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sKaa 159 (248)
T TIGR01832 80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGIRVPSYTASKHG 159 (248)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCCCCchhHHHHHH
Confidence 99999999999876677788899999999999999999999999999754436899999999999888889999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhh-hhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVV-DKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~-~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+.+++++++.|+.++||+||+|+||+|.|++.......... ... ......++.+|+|+|.+++|+++ +...+++|..
T Consensus 160 ~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s-~~~~~~~G~~ 238 (248)
T TIGR01832 160 VAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILERIPAGRWGTPDDIGGPAVFLAS-SASDYVNGYT 238 (248)
T ss_pred HHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-ccccCcCCcE
Confidence 99999999999999999999999999999986432111111 111 11123467899999999999775 4445666665
Q ss_pred e
Q psy4557 951 I 951 (958)
Q Consensus 951 i 951 (958)
+
T Consensus 239 i 239 (248)
T TIGR01832 239 L 239 (248)
T ss_pred E
Confidence 4
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >KOG4169|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=279.52 Aligned_cols=228 Identities=29% Similarity=0.433 Sum_probs=189.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc--CCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN--APGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
++.||.+++|||.+|||++++++|+++|..+.++.-+.|..+..++ +++ ...++.+++|||++..+++++++++...
T Consensus 2 ~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~ak-L~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~ 80 (261)
T KOG4169|consen 2 DLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAK-LQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT 80 (261)
T ss_pred cccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHH-HhccCCCceEEEEEeccccHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999888888777665543 333 2456889999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCcEEEEecCccCcCCCCCChhhhH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR--RPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~--~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
||+||++|||||+. +..+|++.+++|+.|.+..+..++|+|-+++ .+|.|||+||++|..|.|..++|++
T Consensus 81 fg~iDIlINgAGi~--------~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~pVY~A 152 (261)
T KOG4169|consen 81 FGTIDILINGAGIL--------DDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPVYAA 152 (261)
T ss_pred hCceEEEEcccccc--------cchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccchhhhh
Confidence 99999999999996 3567999999999999999999999997665 4689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh--CCCCcEEEEEECCcccCCCCCCCCChhhh----h-hhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 869 TKYFIEGISGALRQEV--SDRNIKVTCIQAGDVKTELLSHSTDRDVV----D-KYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 869 sKaa~~~l~~~la~el--~~~gIrv~~v~PG~v~T~~~~~~~~~~~~----~-~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
||+|+.+||||||... .+.||++++||||+++|+|.....+.... + -.+.-...+...|.++|..++.++..+
T Consensus 153 sKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~~~~l~~~~~q~~~~~a~~~v~aiE~~ 232 (261)
T KOG4169|consen 153 SKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSIKEALERAPKQSPACCAINIVNAIEYP 232 (261)
T ss_pred cccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHHHHHHHHcccCCHHHHHHHHHHHHhhc
Confidence 9999999999998654 55699999999999999986543110000 0 011112335678999999999999888
Q ss_pred CCccccce
Q psy4557 942 SHSAVNSI 949 (958)
Q Consensus 942 ~~~~i~~~ 949 (958)
.+..+.-+
T Consensus 233 ~NGaiw~v 240 (261)
T KOG4169|consen 233 KNGAIWKV 240 (261)
T ss_pred cCCcEEEE
Confidence 77665433
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=295.29 Aligned_cols=233 Identities=24% Similarity=0.409 Sum_probs=191.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+++|+++||||++|||+++|++|+++|++|++++|+.+.++++.+.. +.++..+.+|+++.+++.++++++.+.+|+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH---GDAVVGVEGDVRSLDDHKEAVARCVAAFGK 79 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc---CCceEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999988777765432 346778899999999999999999999999
Q ss_pred ccEEEEccccCCC-ccccCCCH----HHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 794 IDILVNNAGVMYF-TLMEKYKL----EEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 794 iDilInnAG~~~~-~~~~~~~~----~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
+|+||||||+... .++.+.+. ++|++++++|+.|+++++++++|.|.+. +|+||+++|..+..+.++...|++
T Consensus 80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~g~iv~~sS~~~~~~~~~~~~Y~~ 157 (262)
T TIGR03325 80 IDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVAS--RGSVIFTISNAGFYPNGGGPLYTA 157 (262)
T ss_pred CCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhc--CCCEEEEeccceecCCCCCchhHH
Confidence 9999999997532 33434333 5799999999999999999999999743 489999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC---Chh------hhhhhc-cccCCCCCCHHHHHHHHHHHh
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST---DRD------VVDKYD-ISKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~---~~~------~~~~~~-~~~~~~~~~p~~ia~~i~~~l 938 (958)
||+|+++|+++++.|++++ ||||+|+||++.|+|..... ... ..+... ..+..++.+|+|+|.+++|++
T Consensus 158 sKaa~~~l~~~la~e~~~~-irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~l~ 236 (262)
T TIGR03325 158 AKHAVVGLVKELAFELAPY-VRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSVLPIGRMPDAEEYTGAYVFFA 236 (262)
T ss_pred HHHHHHHHHHHHHHhhccC-eEEEEEecCCCcCCCccccccccccccccccchhhhhhhcCCCCCCCChHHhhhheeeee
Confidence 9999999999999999987 99999999999999864311 000 001111 112346789999999999987
Q ss_pred cCCCCccccceEec
Q psy4557 939 LQPSHSAVNSILIE 952 (958)
Q Consensus 939 ~~~~~~~i~~~~i~ 952 (958)
+.+...+++|..+.
T Consensus 237 s~~~~~~~tG~~i~ 250 (262)
T TIGR03325 237 TRGDTVPATGAVLN 250 (262)
T ss_pred cCCCcccccceEEE
Confidence 76566677776653
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=290.00 Aligned_cols=238 Identities=26% Similarity=0.351 Sum_probs=204.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..++||+++||||++|||+++|++|+++|++|++++|+.++++++.+.+...+.++..+++|++++++++++++.+.+.+
T Consensus 6 ~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 6 FDLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred cCCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999988888888877656678889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|+||||||.....++.+.+.++|++++++|+.|++++++.+.+.|.+ ++.|+||++||..+..+.++++.|+++|+
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~iss~~~~~~~~~~~~y~~sK~ 164 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIA-RGAGKIINIASVQSALARPGIAPYTATKG 164 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hCCeEEEEEccchhccCCCCCccHHHHHH
Confidence 99999999999987778888899999999999999999999999999974 44689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
++.+++++++.|++++||+||+|+||+++|++...... ........ .....++..|+|+|.+++|++++ ...+++|.
T Consensus 165 a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~ 243 (255)
T PRK07523 165 AVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTPAGRWGKVEELVGACVFLASD-ASSFVNGH 243 (255)
T ss_pred HHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-hhcCccCc
Confidence 99999999999999999999999999999998643221 11111111 12234577899999999997654 45567774
Q ss_pred Ee
Q psy4557 950 LI 951 (958)
Q Consensus 950 ~i 951 (958)
.+
T Consensus 244 ~i 245 (255)
T PRK07523 244 VL 245 (255)
T ss_pred EE
Confidence 44
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=301.05 Aligned_cols=227 Identities=27% Similarity=0.396 Sum_probs=199.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..+++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++++|++|.++++++++.+.+.+
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 45789999999999999999999999999999999999999999888887777788899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|++|||||.....++.+.+.++|++++++|+.|++++++.++|+|.+ ++.|+||++||.++..+.+..+.|++||+
T Consensus 84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~-~~~g~iV~isS~~~~~~~~~~~~Y~asK~ 162 (334)
T PRK07109 84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRP-RDRGAIIQVGSALAYRSIPLQSAYCAAKH 162 (334)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCcEEEEeCChhhccCCCcchHHHHHHH
Confidence 99999999999887777889999999999999999999999999999974 34699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC--CCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 872 FIEGISGALRQEVSD--RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 872 a~~~l~~~la~el~~--~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
++.+|+++++.|+.. .||+|++|+||+++|++...... ... .......+..+|+++|+.+++++.++.
T Consensus 163 a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~~~~--~~~-~~~~~~~~~~~pe~vA~~i~~~~~~~~ 232 (334)
T PRK07109 163 AIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDWARS--RLP-VEPQPVPPIYQPEVVADAILYAAEHPR 232 (334)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhhhhh--hcc-ccccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 999999999999975 47999999999999997643211 000 011123356799999999999988763
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=298.29 Aligned_cols=225 Identities=26% Similarity=0.451 Sum_probs=189.7
Q ss_pred cCC--chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc-CCccEEEE
Q psy4557 723 GSS--SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL-GHIDILVN 799 (958)
Q Consensus 723 Gas--~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g~iDilIn 799 (958)
|++ +|||+++|++|+++|++|++++|+.+++++..+++.+..+.- ++++|++++++++++++++.+.+ |+||+|||
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~ 79 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAE-VIQCDLSDEESVEALFDEAVERFGGRIDILVN 79 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSE-EEESCTTSHHHHHHHHHHHHHHHCSSESEEEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCc-eEeecCcchHHHHHHHHHHHhhcCCCeEEEEe
Confidence 666 999999999999999999999999998665555554432222 59999999999999999999999 99999999
Q ss_pred ccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 800 NAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 800 nAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
|+|.... .++.+.+.++|++.+++|+++++.++|.++|+|.+ .|+||++||.++..+.+++..|+++|+|+++
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~gsii~iss~~~~~~~~~~~~y~~sKaal~~ 156 (241)
T PF13561_consen 80 NAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKK---GGSIINISSIAAQRPMPGYSAYSASKAALEG 156 (241)
T ss_dssp EEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHH---EEEEEEEEEGGGTSBSTTTHHHHHHHHHHHH
T ss_pred cccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCCcccccchhhcccCccchhhHHHHHHHHH
Confidence 9998765 67888899999999999999999999999998862 3899999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 876 ISGALRQEVSD-RNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 876 l~~~la~el~~-~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
|+|+||.||++ +|||||+|+||++.|++...... ++..+... ..+..+..+|+|+|.+++|++ ++...+|+|..|.
T Consensus 157 l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl~r~~~~~evA~~v~fL~-s~~a~~itG~~i~ 235 (241)
T PF13561_consen 157 LTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPLGRLGTPEEVANAVLFLA-SDAASYITGQVIP 235 (241)
T ss_dssp HHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTTSSHBEHHHHHHHHHHHH-SGGGTTGTSEEEE
T ss_pred HHHHHHHHhccccCeeeeeecccceeccchhccccccchhhhhhhhhccCCCcCHHHHHHHHHHHh-CccccCccCCeEE
Confidence 99999999999 99999999999999998543211 11122222 223345589999999999965 5777789988763
|
... |
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=288.47 Aligned_cols=236 Identities=22% Similarity=0.303 Sum_probs=199.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.+|+++||||++|||+++|++|+++|++|+++.| +.+.++++.+++...+.++..+.+|+++.++++++++++.+.+++
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3689999999999999999999999999998865 556677777777766777889999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|++|||||......+.+.+.++|++++++|+.|++++++++.++|.+++.+|+||++||..+..+.++...|+++|+++
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~ 160 (256)
T PRK12743 81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLPGASAYTAAKHAL 160 (256)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCCCCcchhHHHHHHH
Confidence 99999999997766677889999999999999999999999999997554468999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
.+++++++.++.++||+||+|+||+++|++...................+..+|+|+|.+++|+++ +...+++|..+
T Consensus 161 ~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~-~~~~~~~G~~~ 237 (256)
T PRK12743 161 GGLTKAMALELVEHGILVNAVAPGAIATPMNGMDDSDVKPDSRPGIPLGRPGDTHEIASLVAWLCS-EGASYTTGQSL 237 (256)
T ss_pred HHHHHHHHHHhhhhCeEEEEEEeCCccCccccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-ccccCcCCcEE
Confidence 999999999999999999999999999998653221111111111123456799999999999765 44556666544
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=289.94 Aligned_cols=237 Identities=23% Similarity=0.322 Sum_probs=203.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|+++||||++|||+++|++|+++|++|++++|+.++++++.+.+...+.++..+++|+++.++++++++++.+.++
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999999999999999999998888888876666788999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|+|.+ ++.|+||++||..+..+.+++..|+++|+|
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa 165 (265)
T PRK07097 87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMMSELGRETVSAYAAAKGG 165 (265)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCccccCCCCCCccHHHHHHH
Confidence 9999999999987777888899999999999999999999999999974 446899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC------hhhhhhh--ccccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD------RDVVDKY--DISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~------~~~~~~~--~~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
+.+|+++++.|+.++||+||+|+||+++|++...... ....... ......++.+|+|+|..+++++.++ ..
T Consensus 166 l~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~ 244 (265)
T PRK07097 166 LKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTPAARWGDPEDLAGPAVFLASDA-SN 244 (265)
T ss_pred HHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCCccCCcCHHHHHHHHHHHhCcc-cC
Confidence 9999999999999999999999999999998643211 1111111 1112345789999999999977653 44
Q ss_pred cccceEe
Q psy4557 945 AVNSILI 951 (958)
Q Consensus 945 ~i~~~~i 951 (958)
.+++..+
T Consensus 245 ~~~g~~~ 251 (265)
T PRK07097 245 FVNGHIL 251 (265)
T ss_pred CCCCCEE
Confidence 5666544
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=289.57 Aligned_cols=232 Identities=27% Similarity=0.432 Sum_probs=189.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh-hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~-~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.+ .++++. .. .+.++.+|++++++++++++++.+.
T Consensus 3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~----~~--~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELR----EK--GVFTIKCDVGNRDQVKKSKEVVEKE 76 (255)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH----hC--CCeEEEecCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999998877643 333332 22 3667899999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-CCCCChhhhHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGT 869 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-~~~~~~~Y~as 869 (958)
+|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+ ++.|+||++||.++.. +.++.+.|++|
T Consensus 77 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~-~~~g~iv~isS~~~~~~~~~~~~~Y~as 155 (255)
T PRK06463 77 FGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKL-SKNGAIVNIASNAGIGTAAEGTTFYAIT 155 (255)
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCHHhCCCCCCCccHhHHH
Confidence 999999999999976677788899999999999999999999999999974 3468999999998875 45678899999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh----hhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD----VVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~----~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
|+|+++|+++++.|++++||+||+|+||+|+|+|.......+ ....+. .....+..+|+|+|..++|+++.+ ..
T Consensus 156 Kaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~-~~ 234 (255)
T PRK06463 156 KAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTVLKTTGKPEDIANIVLFLASDD-AR 234 (255)
T ss_pred HHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCCcCCCcCHHHHHHHHHHHcChh-hc
Confidence 999999999999999999999999999999999864321111 111111 112235679999999999976544 44
Q ss_pred cccceEe
Q psy4557 945 AVNSILI 951 (958)
Q Consensus 945 ~i~~~~i 951 (958)
+++|..+
T Consensus 235 ~~~G~~~ 241 (255)
T PRK06463 235 YITGQVI 241 (255)
T ss_pred CCCCCEE
Confidence 5666544
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=290.21 Aligned_cols=234 Identities=25% Similarity=0.326 Sum_probs=196.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.++||+++||||++|||+++|+.|+++|++|++++|+.++++++.+++... +.++..+.+|++++++++++++ .+
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~----~~ 79 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA----EA 79 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH----Hh
Confidence 478999999999999999999999999999999999999888888877643 4467889999999999888765 46
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|++|||||+....++.+.+.++|++++++|+.|++++++.++|.|.+ ++.|+||++||..+..+.+++..|+++|+
T Consensus 80 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~g~iv~iss~~~~~~~~~~~~y~ask~ 158 (259)
T PRK06125 80 GDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKA-RGSGVIVNVIGAAGENPDADYICGSAGNA 158 (259)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCcEEEEecCccccCCCCCchHhHHHHH
Confidence 89999999999987778889999999999999999999999999999974 34589999999999998889999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC---------CChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS---------TDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~---------~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
|+.+|+++++.|+.++|||||+|+||+++|++.... ..++....+. .....++.+|+|+|..++|++ ++
T Consensus 159 al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~-~~ 237 (259)
T PRK06125 159 ALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGLPLGRPATPEEVADLVAFLA-SP 237 (259)
T ss_pred HHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccCCcCCCcCHHHHHHHHHHHc-Cc
Confidence 999999999999999999999999999999964321 0111111111 112235679999999999976 56
Q ss_pred CCccccceEec
Q psy4557 942 SHSAVNSILIE 952 (958)
Q Consensus 942 ~~~~i~~~~i~ 952 (958)
...+++|..+.
T Consensus 238 ~~~~~~G~~i~ 248 (259)
T PRK06125 238 RSGYTSGTVVT 248 (259)
T ss_pred hhccccCceEE
Confidence 67788887664
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=287.07 Aligned_cols=237 Identities=23% Similarity=0.350 Sum_probs=202.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|+++||||++|||+++|++|+++|++|++++|+.+.++++.+++...+.++.++.+|+++.+++.++++.+.+.++
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999888888887766666788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....++ +.+.++|++.+++|+.|++++++.++|+|.+ .+.|+||++||.++..+.++...|++||+|
T Consensus 88 ~~d~li~~ag~~~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a 165 (255)
T PRK06113 88 KVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEK-NGGGVILTITSMAAENKNINMTSYASSKAA 165 (255)
T ss_pred CCCEEEECCCCCCCCCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHh-cCCcEEEEEecccccCCCCCcchhHHHHHH
Confidence 99999999998655444 6788999999999999999999999999963 345899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
+++|+++++.++.++|||||+|+||+++|++......+...... ......+..+|+|++..+++++ ++...+++|..|
T Consensus 166 ~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~-~~~~~~~~G~~i 244 (255)
T PRK06113 166 ASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLC-SPAASWVSGQIL 244 (255)
T ss_pred HHHHHHHHHHHhhhhCeEEEEEecccccccccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHc-CccccCccCCEE
Confidence 99999999999999999999999999999986543222221111 1112235679999999999976 566667777655
Q ss_pred c
Q psy4557 952 E 952 (958)
Q Consensus 952 ~ 952 (958)
.
T Consensus 245 ~ 245 (255)
T PRK06113 245 T 245 (255)
T ss_pred E
Confidence 3
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=288.37 Aligned_cols=237 Identities=25% Similarity=0.361 Sum_probs=192.4
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+.+++++|+++||||++|||+++|++|+++|++|++++|+. ..+++.+++...+.++.++.+|+++.+++.++++++.+
T Consensus 2 ~~~~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK12823 2 MNQRFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-LVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVE 80 (260)
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch-HHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999985 45566666665566788899999999999999999999
Q ss_pred HcCCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 790 ELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 790 ~~g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
.++++|+||||||... ..++.+.+.++|++.+++|+.|++++++.++|.|.+ ++.|+||++||.++. .++...|++
T Consensus 81 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~g~iv~~sS~~~~--~~~~~~Y~~ 157 (260)
T PRK12823 81 AFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLA-QGGGAIVNVSSIATR--GINRVPYSA 157 (260)
T ss_pred HcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCeEEEEcCcccc--CCCCCccHH
Confidence 9999999999999753 467788899999999999999999999999999974 345899999999875 235668999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC------CC--h----hhhhhh-ccccCCCCCCHHHHHHHHH
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS------TD--R----DVVDKY-DISKAVPVLTTKEISQSII 935 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~------~~--~----~~~~~~-~~~~~~~~~~p~~ia~~i~ 935 (958)
||+|+++|+++++.|++++||+||+|+||+|.|++.... .. . ...... ......+..+|+|+|++++
T Consensus 158 sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~ 237 (260)
T PRK12823 158 AKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMKRYGTIDEQVAAIL 237 (260)
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCcccCCCHHHHHHHHH
Confidence 999999999999999999999999999999999863210 00 0 000011 1112235678999999999
Q ss_pred HHhcCCCCccccceEe
Q psy4557 936 FALLQPSHSAVNSILI 951 (958)
Q Consensus 936 ~~l~~~~~~~i~~~~i 951 (958)
|+++ +...++++..+
T Consensus 238 ~l~s-~~~~~~~g~~~ 252 (260)
T PRK12823 238 FLAS-DEASYITGTVL 252 (260)
T ss_pred HHcC-cccccccCcEE
Confidence 9765 44556666444
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=290.52 Aligned_cols=233 Identities=21% Similarity=0.285 Sum_probs=192.4
Q ss_pred EEEEEcCCchHHHHHHHHHHH----cCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVT----LGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~----~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++||||++|||+++|++|++ +|++|++++|+.++++++.+++... +.++.++.+|+++.++++++++++.+.+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP 81 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence 689999999999999999997 7999999999999999988888652 3467889999999999999999999887
Q ss_pred CCc----cEEEEccccCCC--ccccCC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCcEEEEecCccCcCCCCCC
Q psy4557 792 GHI----DILVNNAGVMYF--TLMEKY-KLEEWNAMINVNIKGVLHCIGNILPSMLHSR-RPGHILNISSNAGVRPFAGL 863 (958)
Q Consensus 792 g~i----DilInnAG~~~~--~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~-~~g~IV~isS~~g~~~~~~~ 863 (958)
|.+ |+||||||.... ....+. +.++|++++++|+.|++++++.++|.|.++. ..|+||++||.++..+.+++
T Consensus 82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~~~~ 161 (256)
T TIGR01500 82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFKGW 161 (256)
T ss_pred ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCCCCc
Confidence 753 699999998543 223333 5789999999999999999999999997442 24899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----Chhhhhhhc-cccCCCCCCHHHHHHHHHHHh
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----DRDVVDKYD-ISKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l 938 (958)
+.|++||+|+++|+++|+.|++++||+||+|+||+|+|+|..... +++....+. .....++.+|+|+|..+++++
T Consensus 162 ~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~l~ 241 (256)
T TIGR01500 162 ALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELKAKGKLVDPKVSAQKLLSLL 241 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999864211 111111111 112345789999999999988
Q ss_pred cCCCCccccceEec
Q psy4557 939 LQPSHSAVNSILIE 952 (958)
Q Consensus 939 ~~~~~~~i~~~~i~ 952 (958)
.+ ..+++|..++
T Consensus 242 ~~--~~~~~G~~~~ 253 (256)
T TIGR01500 242 EK--DKFKSGAHVD 253 (256)
T ss_pred hc--CCcCCcceee
Confidence 53 4578888775
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=286.63 Aligned_cols=237 Identities=24% Similarity=0.314 Sum_probs=202.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.+.++++.+++... +.++..+.+|++++++++++++++.+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999888888877654 457888999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
++++|++|||||.....++.+.+.++|++++++|+.|++.++++++|+|.+ ++.|+||++||.++..+.++.+.|+++|
T Consensus 86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~ii~~sS~~~~~~~~~~~~Y~~sK 164 (257)
T PRK09242 86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQ-HASSAIVNIGSVSGLTHVRSGAPYGMTK 164 (257)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-cCCceEEEECccccCCCCCCCcchHHHH
Confidence 999999999999876667778899999999999999999999999999974 3458999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+++.+|+++++.|+.++||+||+|+||+++|++..... .++..+... .....+..+|++++.++.|+++. ....+++
T Consensus 165 ~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g 243 (257)
T PRK09242 165 AALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPMRRVGEPEEVAAAVAFLCMP-AASYITG 243 (257)
T ss_pred HHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-ccccccC
Confidence 99999999999999999999999999999999865432 222222111 11233567999999999998764 4445565
Q ss_pred eEe
Q psy4557 949 ILI 951 (958)
Q Consensus 949 ~~i 951 (958)
..+
T Consensus 244 ~~i 246 (257)
T PRK09242 244 QCI 246 (257)
T ss_pred CEE
Confidence 554
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=319.05 Aligned_cols=277 Identities=20% Similarity=0.270 Sum_probs=203.7
Q ss_pred ccCceEEeccccchHHHHHHHHhcC-CC-CeEEEeccCCChhhHHHHHHHHHHHhccc--------ccc-ccccCceEEe
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVD-TK-CTLFCPVRETPNKTLLQRLEDIMLKYHMS--------LDL-NNYTDRLILV 386 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~-~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~--------~~~-~~~~~ri~~v 386 (958)
++++|||||||||||++|+++||+. ++ .+||||+|..+...+.+|+.+.+....+. ... ....+|++++
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v 197 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV 197 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence 5789999999999999999999975 34 48999999998888888986433211100 000 1124799999
Q ss_pred cccCCCCCCCCCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccC-CCccEEEEecccccCCCC
Q psy4557 387 KSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSIYPSTS 465 (958)
Q Consensus 387 ~gDl~~~~lGL~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v~~~~~ 465 (958)
.||++++.|||++ +.++.+.+++|+|||+||.+++..+++....+||.||.+|+++|... +.++|+|+||.+|||...
T Consensus 198 ~GDl~d~~LGLs~-~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~~~ 276 (605)
T PLN02503 198 VGNVCESNLGLEP-DLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQ 276 (605)
T ss_pred EeeCCCcccCCCH-HHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecCCC
Confidence 9999999999986 67888889999999999999999899999999999999999999765 568899999999998753
Q ss_pred CCCcccccc-c--------------------Cc-----------C--------------------CCCCCCCChhHHHHH
Q psy4557 466 ENFQEDYTV-A--------------------DF-----------D--------------------DFMTTTSGYGQSKIV 493 (958)
Q Consensus 466 ~~~~e~~~~-~--------------------~~-----------~--------------------~~~~~~~gY~~SK~~ 493 (958)
..+.|..-+ . +. . ......|.|..||.+
T Consensus 277 G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~TK~l 356 (605)
T PLN02503 277 GRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKAM 356 (605)
T ss_pred CeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHHHHHH
Confidence 232222110 0 00 0 001235899999999
Q ss_pred HHHHHHHHhhCCCCEEEEecCceeccCCCC--CcChhHH-HHHHHHHHHHhCCcC----CCCCcCCcccHHHHHHHHHHH
Q psy4557 494 SEYLVLNAGQMGLPVSIVRCGNIGGSLEFK--NWNLVDL-NLYILKAITRLGYAP----DIDWYLEFTPVDFLTKSLVQL 566 (958)
Q Consensus 494 aE~lv~~a~~~glp~~I~R~g~i~G~~~~g--~~n~~d~-~~~l~~~~~~~g~~P----~~~~~~~~~pVD~va~aiv~l 566 (958)
||+++.++. .++|++|+||+.|.+..+.+ .|...+. ..-++- +.-.|.++ +.+..+|++|||+|+++++.+
T Consensus 357 AE~lV~~~~-~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~-~~g~G~lr~~~~~~~~~~DiVPVD~vvna~i~a 434 (605)
T PLN02503 357 GEMVINSMR-GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVL-YYGKGQLTGFLADPNGVLDVVPADMVVNATLAA 434 (605)
T ss_pred HHHHHHHhc-CCCCEEEEcCCEecccccCCccccccCccccchhhh-heeccceeEEEeCCCeeEeEEeecHHHHHHHHH
Confidence 999998665 48999999999997765533 2422211 111111 11245443 334579999999999999988
Q ss_pred hcC-c---CCCCceEEecCC--CCCCHHHHHHHHHHc
Q psy4557 567 TTN-V---NNANKIYNFINT--NPIHIKTLVSVLNTY 597 (958)
Q Consensus 567 ~~~-~---~~~~~v~h~~n~--~~~~~~~l~~~l~~~ 597 (958)
+.. . ...+.+||++++ +|++|.++.+.+.+.
T Consensus 435 ~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~ 471 (605)
T PLN02503 435 MAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEH 471 (605)
T ss_pred HHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHH
Confidence 431 1 224689999988 999999999987653
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=293.19 Aligned_cols=234 Identities=23% Similarity=0.315 Sum_probs=195.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++||+++||||++|||+++|++|+++|++|++++++ .+.++++.+++...++++..+.+|+++.+++.++++.+.+
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~- 86 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG- 86 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH-
Confidence 56899999999999999999999999999999999875 4567777777876677888999999999999999999998
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC------CCcEEEEecCccCcCCCCCCh
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR------RPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~------~~g~IV~isS~~g~~~~~~~~ 864 (958)
+|++|+||||||+.....+.+.+.++|++++++|+.|++++++.++|+|.+.. ..|+||++||.++..+.++.+
T Consensus 87 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~ 166 (306)
T PRK07792 87 LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPVGQA 166 (306)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCCCCc
Confidence 99999999999998777788889999999999999999999999999996421 237999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
.|+++|+|+.+|+++++.|++++||+||+|+|| +.|+|.......... .. .......+|+++|..+.|+++ +...
T Consensus 167 ~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg-~~t~~~~~~~~~~~~--~~-~~~~~~~~pe~va~~v~~L~s-~~~~ 241 (306)
T PRK07792 167 NYGAAKAGITALTLSAARALGRYGVRANAICPR-ARTAMTADVFGDAPD--VE-AGGIDPLSPEHVVPLVQFLAS-PAAA 241 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC-CCCchhhhhccccch--hh-hhccCCCCHHHHHHHHHHHcC-cccc
Confidence 999999999999999999999999999999999 488875432111000 00 012234689999999999765 4444
Q ss_pred cccceEe
Q psy4557 945 AVNSILI 951 (958)
Q Consensus 945 ~i~~~~i 951 (958)
+++|..+
T Consensus 242 ~~tG~~~ 248 (306)
T PRK07792 242 EVNGQVF 248 (306)
T ss_pred CCCCCEE
Confidence 5665443
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-31 Score=284.83 Aligned_cols=230 Identities=24% Similarity=0.325 Sum_probs=194.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.+. ...+..+.++++|+++.++++++++.+.+.++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~--------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE--------TVDGRPAEFHAADVRDPDQVAALVDAIVERHG 74 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh--------hhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999998754 11234677889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+.....+.+.+.++|++++++|+.|++.+++.+.|.|.+++..|+||++||.++..+.++...|++||++
T Consensus 75 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a 154 (252)
T PRK07856 75 RLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSPGTAAYGAAKAG 154 (252)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCCCCchhHHHHHH
Confidence 99999999998876777888999999999999999999999999999754456899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+++|+++++.|+++. |+||+|+||+|+|++..... .++...... .....+..+|+|+|..++|+++ +...+++|..
T Consensus 155 ~~~l~~~la~e~~~~-i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~~L~~-~~~~~i~G~~ 232 (252)
T PRK07856 155 LLNLTRSLAVEWAPK-VRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVPLGRLATPADIAWACLFLAS-DLASYVSGAN 232 (252)
T ss_pred HHHHHHHHHHHhcCC-eEEEEEEeccccChHHhhhccCHHHHHHHhhcCCCCCCcCHHHHHHHHHHHcC-cccCCccCCE
Confidence 999999999999988 99999999999999854321 111111111 1122456899999999999764 5556777776
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
|.
T Consensus 233 i~ 234 (252)
T PRK07856 233 LE 234 (252)
T ss_pred EE
Confidence 53
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-31 Score=287.74 Aligned_cols=231 Identities=24% Similarity=0.330 Sum_probs=197.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh-------HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-------LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVR 785 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~-------l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~ 785 (958)
.++||+++||||++|||+++|+.|+++|++|++++|+.+. ++++.+++...+.++.++.+|+++.+++.++++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999998652 555666666666778899999999999999999
Q ss_pred HHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC--CCC
Q psy4557 786 EVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF--AGL 863 (958)
Q Consensus 786 ~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~--~~~ 863 (958)
++.+.+|++|+||||||.....++.+.+.++|++++++|+.|++.+++.++|+|.+ +++|+||++||..+..+. +++
T Consensus 83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~-~~~g~iv~iss~~~~~~~~~~~~ 161 (273)
T PRK08278 83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKK-SENPHILTLSPPLNLDPKWFAPH 161 (273)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHh-cCCCEEEEECCchhccccccCCc
Confidence 99999999999999999877777788899999999999999999999999999974 346899999999888876 888
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECC-cccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAG-DVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG-~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+.|++||+|+++|+++++.|++++||+||+|+|| ++.|++........ ....+..+|+++|+.+++++..+
T Consensus 162 ~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~~~~~~~~~-------~~~~~~~~p~~va~~~~~l~~~~- 233 (273)
T PRK08278 162 TAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAAVRNLLGGD-------EAMRRSRTPEIMADAAYEILSRP- 233 (273)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHHHHhccccc-------ccccccCCHHHHHHHHHHHhcCc-
Confidence 9999999999999999999999999999999999 68998644321110 11224679999999999977654
Q ss_pred CccccceEec
Q psy4557 943 HSAVNSILIE 952 (958)
Q Consensus 943 ~~~i~~~~i~ 952 (958)
..+++|..+.
T Consensus 234 ~~~~~G~~~~ 243 (273)
T PRK08278 234 AREFTGNFLI 243 (273)
T ss_pred cccceeEEEe
Confidence 4567777664
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-31 Score=288.30 Aligned_cols=222 Identities=23% Similarity=0.242 Sum_probs=182.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+++|||| +|||+++|++|+ +|++|++++|+.++++++.+++...+.++.++++|+++++++.++++++ +.+|++|
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~-~~~g~id 78 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA-QTLGPVT 78 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH-HhcCCCC
Confidence 689999998 599999999996 8999999999998888888877665567888999999999999999988 5689999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC---------------
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF--------------- 860 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~--------------- 860 (958)
+||||||+.. ..++|++++++|+.|++++++.++|.|. . +|++|++||.++..+.
T Consensus 79 ~li~nAG~~~-------~~~~~~~~~~vN~~g~~~l~~~~~~~m~-~--~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~ 148 (275)
T PRK06940 79 GLVHTAGVSP-------SQASPEAILKVDLYGTALVLEEFGKVIA-P--GGAGVVIASQSGHRLPALTAEQERALATTPT 148 (275)
T ss_pred EEEECCCcCC-------chhhHHHHHHHhhHHHHHHHHHHHHHHh-h--CCCEEEEEecccccCcccchhhhcccccccc
Confidence 9999999752 2367999999999999999999999995 2 3788999999887642
Q ss_pred ---------------CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC---hhhhhhh-ccccC
Q psy4557 861 ---------------AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD---RDVVDKY-DISKA 921 (958)
Q Consensus 861 ---------------~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~---~~~~~~~-~~~~~ 921 (958)
+++..|++||+|+.+|+|+++.|++++|||||+|+||+++|+|...... .+..... ...+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~ 228 (275)
T PRK06940 149 EELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKSPA 228 (275)
T ss_pred ccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhCCc
Confidence 2567899999999999999999999999999999999999998643211 1111111 11223
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 922 VPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 922 ~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
.++.+|+|+|.+++|+++ +...+++|..+
T Consensus 229 ~r~~~peeia~~~~fL~s-~~~~~itG~~i 257 (275)
T PRK06940 229 GRPGTPDEIAALAEFLMG-PRGSFITGSDF 257 (275)
T ss_pred ccCCCHHHHHHHHHHHcC-cccCcccCceE
Confidence 467899999999999654 55667777544
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=286.94 Aligned_cols=220 Identities=28% Similarity=0.403 Sum_probs=191.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+.++.++.+|++|.+++.++++.+.+.+
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 44688999999999999999999999999999999999999998888886666678889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCC--CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-CCCCChhhhH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKY--KLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTG 868 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~--~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-~~~~~~~Y~a 868 (958)
|++|++|||||+....++.+. +.+++++++++|+.|++.++++++|.|.+ ++.|+||++||.++.. +.|+...|++
T Consensus 116 g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~~~~p~~~~Y~a 194 (293)
T PRK05866 116 GGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLE-RGDGHIINVATWGVLSEASPLFSVYNA 194 (293)
T ss_pred CCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcEEEEECChhhcCCCCCCcchHHH
Confidence 999999999999766555543 45889999999999999999999999974 4468999999987664 4678889999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
||+|+++|+++++.|+.++||+|++|+||+|+|+|...... ....+..+|+++|+.++..+.+.
T Consensus 195 sKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~~~~---------~~~~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 195 SKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPTKA---------YDGLPALTADEAAEWMVTAARTR 258 (293)
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCcccccccc---------ccCCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998643211 01234579999999999988754
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.7e-31 Score=286.28 Aligned_cols=217 Identities=29% Similarity=0.402 Sum_probs=194.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++|||||+|||+++|++|+++|++|++++|+.++++++.+.+. .+.++.+|+++++++.++++.+.+.++
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG----LVVGGPLDVTDPASFAAFLDAVEADLG 77 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc----cceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999999988887776653 467789999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+ ++.|+||++||.++..+.++.+.|++||++
T Consensus 78 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~Y~asKaa 156 (273)
T PRK07825 78 PIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVP-RGRGHVVNVASLAGKIPVPGMATYCASKHA 156 (273)
T ss_pred CCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCEEEEEcCccccCCCCCCcchHHHHHH
Confidence 9999999999987778888899999999999999999999999999974 456899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+.+|+++|+.|+.+.||+|++|+||++.|++...... ....+..+|+++|+.+++++.++..
T Consensus 157 ~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~~~~---------~~~~~~~~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 157 VVGFTDAARLELRGTGVHVSVVLPSFVNTELIAGTGG---------AKGFKNVEPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred HHHHHHHHHHHhhccCcEEEEEeCCcCcchhhccccc---------ccCCCCCCHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999998653211 1123568999999999998877654
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=260.27 Aligned_cols=185 Identities=27% Similarity=0.394 Sum_probs=170.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+.|-+++||||++|||+++|++|.+.|..||+++|+++++++.+++.+ ......||+.|.++.+++++.+++.|.
T Consensus 2 k~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p----~~~t~v~Dv~d~~~~~~lvewLkk~~P 77 (245)
T COG3967 2 KTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENP----EIHTEVCDVADRDSRRELVEWLKKEYP 77 (245)
T ss_pred cccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCc----chheeeecccchhhHHHHHHHHHhhCC
Confidence 3578899999999999999999999999999999999999999887764 466788999999999999999999999
Q ss_pred CccEEEEccccCCCcccc--CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 793 HIDILVNNAGVMYFTLME--KYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~--~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
.+++||||||+...-.+. +...+..+.-+++|+.+|+++++.++|++++ ++.+.|||+||..+..|....+.||++|
T Consensus 78 ~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~-q~~a~IInVSSGLafvPm~~~PvYcaTK 156 (245)
T COG3967 78 NLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLR-QPEATIINVSSGLAFVPMASTPVYCATK 156 (245)
T ss_pred chheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHh-CCCceEEEeccccccCcccccccchhhH
Confidence 999999999998654433 3456778999999999999999999999984 4579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCC
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTE 902 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~ 902 (958)
+|++.++.+|+..++..+|+|.-+.|..|+|+
T Consensus 157 AaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 157 AAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred HHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 99999999999999999999999999999996
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=282.26 Aligned_cols=239 Identities=26% Similarity=0.290 Sum_probs=205.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..++||+++||||++|||+++|++|+++|++|++++|+.+.++++.+++.+.+.++.++.+|+++++++.++++++.+.+
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999988888888887666678899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|++|||||.....++.+.+.++|++++++|+.|++.+++.+++.|.+ ++.|+||++||..+..+.++...|+++|+
T Consensus 87 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~ 165 (256)
T PRK06124 87 GRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKR-QGYGRIIAITSIAGQVARAGDAVYPAAKQ 165 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCcEEEEEeechhccCCCCccHhHHHHH
Confidence 99999999999887777888899999999999999999999999999974 34689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
++.+++++++.|++++||+|++|+||+++|++..... .+....... .....++..|+|++..+++++.. ...+++|.
T Consensus 166 a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~-~~~~~~G~ 244 (256)
T PRK06124 166 GLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRTPLGRWGRPEEIAGAAVFLASP-AASYVNGH 244 (256)
T ss_pred HHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc-ccCCcCCC
Confidence 9999999999999999999999999999999854321 111111111 11234578999999999997654 44677776
Q ss_pred Eec
Q psy4557 950 LIE 952 (958)
Q Consensus 950 ~i~ 952 (958)
.+.
T Consensus 245 ~i~ 247 (256)
T PRK06124 245 VLA 247 (256)
T ss_pred EEE
Confidence 653
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-31 Score=293.85 Aligned_cols=212 Identities=28% Similarity=0.401 Sum_probs=178.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.||+++|||||+|||+++|++|+++|++|++++|+.++++++.+++.+. +.++..+.+|+++ ++.+.++++.+.++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~l~~~~~ 129 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG--DIDEGVKRIKETIE 129 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC--CcHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999998888653 2367788999985 33444555555555
Q ss_pred C--ccEEEEccccCCC--ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-C-CCCChhh
Q psy4557 793 H--IDILVNNAGVMYF--TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-P-FAGLAVY 866 (958)
Q Consensus 793 ~--iDilInnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-~-~~~~~~Y 866 (958)
+ +|+||||||+... ..+.+.+.++|++++++|+.|++.+++.++|.|.+ ++.|+||++||.++.. + .|+.+.|
T Consensus 130 ~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~-~~~g~IV~iSS~a~~~~~~~p~~~~Y 208 (320)
T PLN02780 130 GLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLK-RKKGAIINIGSGAAIVIPSDPLYAVY 208 (320)
T ss_pred CCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cCCcEEEEEechhhccCCCCccchHH
Confidence 4 6699999998743 45778899999999999999999999999999974 4569999999999964 3 5889999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcC
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
++||+|+.+|+++|+.|++++||+|++|+||+|+|+|..... ......+|+++|+.++..+..
T Consensus 209 ~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~~~-----------~~~~~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 209 AATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRR-----------SSFLVPSSDGYARAALRWVGY 271 (320)
T ss_pred HHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCcccccC-----------CCCCCCCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999864210 012246899999999998854
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=280.42 Aligned_cols=240 Identities=28% Similarity=0.415 Sum_probs=206.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..++||+++||||++|||+++|++|+++|++|++++|+.++++++...+...+.++.++.+|+++.++++++++++.+.+
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999999988888776666678889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-------CcEEEEecCccCcCCCCCCh
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRR-------PGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~-------~g~IV~isS~~g~~~~~~~~ 864 (958)
+++|++|||||.....++.+.+.++|+.++++|+.|++.+++.++|.|..... .|+||++||..+..+.+...
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~ 164 (258)
T PRK06949 85 GTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVLPQIG 164 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCCCCcc
Confidence 99999999999876667778889999999999999999999999999974432 48999999999998888999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
.|+++|+++..++++++.+++++||+|++|+||+|+|++............. ......++.+|+|++..+.|+++ +..
T Consensus 165 ~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~-~~~ 243 (258)
T PRK06949 165 LYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWETEQGQKLVSMLPRKRVGKPEDLDGLLLLLAA-DES 243 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-hhh
Confidence 9999999999999999999999999999999999999986532221111111 11233467899999999999765 656
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..|.
T Consensus 244 ~~~~G~~i~ 252 (258)
T PRK06949 244 QFINGAIIS 252 (258)
T ss_pred cCCCCcEEE
Confidence 788887764
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=281.93 Aligned_cols=235 Identities=23% Similarity=0.322 Sum_probs=198.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|+.|+++|++|++++|+.++++++.+.+. .++..+++|++++++++++++++.+.++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG---PAAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC---CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3779999999999999999999999999999999999988887776653 3577889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....++.+.+.++|+.++++|+.|++.+++++++.|.++..+|+||++||..+..+.++.+.|++||++
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a 159 (257)
T PRK07067 80 GIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEALVSHYCATKAA 159 (257)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCCCCchhhhhHHH
Confidence 99999999998877778888999999999999999999999999999755446899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----------Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----------DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----------~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+.+|+|+++.|++++||+||+|+||+++|+++.... ..+...... .....+...|+|+|++++|+++.+
T Consensus 160 ~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~ 239 (257)
T PRK07067 160 VISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGEAVPLGRMGVPDDLTGMALFLASAD 239 (257)
T ss_pred HHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhhcCCCCCccCHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999854311 000001111 112345779999999999987654
Q ss_pred CCccccceEe
Q psy4557 942 SHSAVNSILI 951 (958)
Q Consensus 942 ~~~~i~~~~i 951 (958)
..++++..+
T Consensus 240 -~~~~~g~~~ 248 (257)
T PRK07067 240 -ADYIVAQTY 248 (257)
T ss_pred -cccccCcEE
Confidence 445555443
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=277.98 Aligned_cols=235 Identities=26% Similarity=0.362 Sum_probs=196.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
|++|+++||||++|||+++|++|+++|++|++. +|+..+.++..+++...+.++..+.+|+++.+++.++++++.+.++
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG 80 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999885 4455556666666655566788889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....++.+.+.++|++++++|+.|++.+++.++|.|.+ ++.|+||++||..+..+.+++..|+++|++
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~isS~~~~~~~~~~~~y~~sK~a 159 (246)
T PRK12938 81 EIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVE-RGWGRIINISSVNGQKGQFGQTNYSTAKAG 159 (246)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCeEEEEEechhccCCCCCChhHHHHHHH
Confidence 9999999999876667788899999999999999999999999999974 445899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
+.+|+++++.|+.+.||+||+|+||++.|++..... ++..... ......+..+|++++..++|+++. ...++++..+
T Consensus 160 ~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~-~~~~~~g~~~ 237 (246)
T PRK12938 160 IHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIR-PDVLEKIVATIPVRRLGSPDEIGSIVAWLASE-ESGFSTGADF 237 (246)
T ss_pred HHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcC-hHHHHHHHhcCCccCCcCHHHHHHHHHHHcCc-ccCCccCcEE
Confidence 999999999999999999999999999999865422 2111111 111223567999999999997654 4456666444
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=279.76 Aligned_cols=236 Identities=19% Similarity=0.276 Sum_probs=199.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|+++||||++|||+++|+.|+++|++|++++|+.++++++.+.+...+.++.++.+|+++++++.++++++.+.++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999888888887765566788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||......+.+.+.++|++++++|+.|++.+++.+.|+|.+.+..|+||++||.++..+.++...|++||++
T Consensus 87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK~a 166 (263)
T PRK07814 87 RLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAGRGFAAYGTAKAA 166 (263)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCCCCCchhHHHHHH
Confidence 99999999998766677788999999999999999999999999999864567999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+.+++++++.|+.+ +|+||+|+||++.|++..... ......... .....+..+|+|+|+.++|++.+. ...+++..
T Consensus 167 ~~~~~~~~~~e~~~-~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~-~~~~~g~~ 244 (263)
T PRK07814 167 LAHYTRLAALDLCP-RIRVNAIAPGSILTSALEVVAANDELRAPMEKATPLRRLGDPEDIAAAAVYLASPA-GSYLTGKT 244 (263)
T ss_pred HHHHHHHHHHHHCC-CceEEEEEeCCCcCchhhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcc-ccCcCCCE
Confidence 99999999999987 699999999999999764321 111111111 112234679999999999976543 33444433
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=314.66 Aligned_cols=232 Identities=26% Similarity=0.323 Sum_probs=202.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..+++++++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|+++.+++.++++++.+.+
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 34578899999999999999999999999999999999999999888887766778899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+...+++.+.+.++|++++++|+.|++.+++.++|.|.+++.+|+||++||.++..+.++...|++||+
T Consensus 391 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sKa 470 (582)
T PRK05855 391 GVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSRSLPAYATSKA 470 (582)
T ss_pred CCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCCCCcHHHHHHH
Confidence 99999999999988778889999999999999999999999999999986554689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC----hhhh----hhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD----RDVV----DKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~----~~~~----~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|+++|+++|+.|+.++||+|++|+||+|+|+|...... .+.. .........+..+|+++|+.+++++..+..
T Consensus 471 a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~~~~~~~~~ 550 (582)
T PRK05855 471 AVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATTRFAGADAEDEARRRGRADKLYQRRGYGPEKVAKAIVDAVKRNKA 550 (582)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhccccCCcccchhhhHHhhhhhhccccCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999998654211 0000 001111123456899999999999887654
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=276.30 Aligned_cols=225 Identities=14% Similarity=0.110 Sum_probs=184.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+++||||++|||+++|++|+++|++|++++|+.+... +.+...+ +.++.+|+++.++++++++++.+.++++|
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~id 76 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI---DGLRQAG--AQCIQADFSTNAGIMAFIDELKQHTDGLR 76 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH---HHHHHcC--CEEEEcCCCCHHHHHHHHHHHHhhCCCcc
Confidence 689999999999999999999999999999999876432 2332222 56789999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR-RPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~-~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
++|||||+.......+.+.++|++++++|+.+++.+++.++|.|.+.+ ..|+||++||..+..+.+++..|++||+|++
T Consensus 77 ~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~asKaal~ 156 (236)
T PRK06483 77 AIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGSDKHIAYAASKAALD 156 (236)
T ss_pred EEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCCCCCccHHHHHHHHH
Confidence 999999986555556778999999999999999999999999997433 1589999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhh-hccccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDK-YDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~-~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+|+++++.|+++ +||||+|+||++.|+... .+..... .......+..+|+|+|..+.|+++ ..+++|..+.
T Consensus 157 ~l~~~~a~e~~~-~irvn~v~Pg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~---~~~~~G~~i~ 228 (236)
T PRK06483 157 NMTLSFAAKLAP-EVKVNSIAPALILFNEGD---DAAYRQKALAKSLLKIEPGEEEIIDLVDYLLT---SCYVTGRSLP 228 (236)
T ss_pred HHHHHHHHHHCC-CcEEEEEccCceecCCCC---CHHHHHHHhccCccccCCCHHHHHHHHHHHhc---CCCcCCcEEE
Confidence 999999999987 599999999999886431 1111111 111122346789999999999885 3567776653
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=280.04 Aligned_cols=236 Identities=25% Similarity=0.336 Sum_probs=195.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|+.|+++|++|++++|+.+ ..+..+++...+.++..+++|+++.++++++++++.+.++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999999875 3444445544455678889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccC-cCCCCCChhhhHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTKY 871 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g-~~~~~~~~~Y~asKa 871 (958)
++|++|||||.....++.+.+.++|++++++|+.|++.+++.++|.|.+. ..++||++||..+ ..+.+++..|+++|+
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~~~~~~~~Y~~sK~ 160 (263)
T PRK08226 82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIAR-KDGRIVMMSSVTGDMVADPGETAYALTKA 160 (263)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEECcHHhcccCCCCcchHHHHHH
Confidence 99999999999777778888999999999999999999999999998743 4589999999888 466788899999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-------Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-------DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-------~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
++++++++++.|+.++||+||+|+||+++|+|..... ......... ..+..++.+|+|+|..++|+++ +..
T Consensus 161 a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~~-~~~ 239 (263)
T PRK08226 161 AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPLRRLADPLEVGELAAFLAS-DES 239 (263)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCCCCCCCCHHHHHHHHHHHcC-chh
Confidence 9999999999999999999999999999999864321 011111111 1122346799999999999664 555
Q ss_pred ccccceEe
Q psy4557 944 SAVNSILI 951 (958)
Q Consensus 944 ~~i~~~~i 951 (958)
.+++|..+
T Consensus 240 ~~~~g~~i 247 (263)
T PRK08226 240 SYLTGTQN 247 (263)
T ss_pred cCCcCceE
Confidence 67887554
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=274.52 Aligned_cols=235 Identities=26% Similarity=0.428 Sum_probs=207.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
++|+++||||++|||+++|++|+++|++|++++|+.+..+++.+.+.+.+.++.++.+|+++.+++.++++.+.+.++++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP 84 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999999999999988888877776656678889999999999999999999999999
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
|++|||||.....++.+.+.++|++++++|+.|++.+++.++|.|.+ ++.|+||++||.++..+.+++..|+++|++++
T Consensus 85 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~isS~~~~~~~~~~~~Y~~sK~~~~ 163 (241)
T PRK07454 85 DVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRA-RGGGLIINVSSIAARNAFPQWGAYCVSKAALA 163 (241)
T ss_pred CEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHh-cCCcEEEEEccHHhCcCCCCccHHHHHHHHHH
Confidence 99999999987777788899999999999999999999999999974 34589999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecCC
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEPP 954 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p~ 954 (958)
+++++++.|+.+.||++++|.||++.|++....... .. ....+..+|+++|+.+++++.++...++.++.+.|.
T Consensus 164 ~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~~~---~~---~~~~~~~~~~~va~~~~~l~~~~~~~~~~~~~~~~~ 237 (241)
T PRK07454 164 AFTKCLAEEERSHGIRVCTITLGAVNTPLWDTETVQ---AD---FDRSAMLSPEQVAQTILHLAQLPPSAVIEDLTLMPS 237 (241)
T ss_pred HHHHHHHHHhhhhCCEEEEEecCcccCCcccccccc---cc---cccccCCCHHHHHHHHHHHHcCCccceeeeEEeecC
Confidence 999999999999999999999999999985431100 00 112346799999999999999998999999998886
Q ss_pred CC
Q psy4557 955 LA 956 (958)
Q Consensus 955 ~~ 956 (958)
-.
T Consensus 238 ~~ 239 (241)
T PRK07454 238 AG 239 (241)
T ss_pred CC
Confidence 43
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=278.84 Aligned_cols=236 Identities=19% Similarity=0.268 Sum_probs=197.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||.++|++|+++|++|++++|+.+.+++..+++...+.+..++.+|++++++++++++++.+.++
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999999999888887777765555678889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....++.+.+.++|++++++|+.|++.++++++|.|.+ .+|+||++||.++..+.++++.|+++|+|
T Consensus 86 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~--~~g~iv~iss~~~~~~~~~~~~Y~asK~a 163 (264)
T PRK07576 86 PIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRR--PGASIIQISAPQAFVPMPMQAHVCAAKAG 163 (264)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--CCCEEEEECChhhccCCCCccHHHHHHHH
Confidence 9999999999876667788899999999999999999999999999863 24899999999999899999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCccc-CCCCCCC-CChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVK-TELLSHS-TDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~-T~~~~~~-~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
+++|+++++.|+.++||+|++|+||+++ |++.... ......... ......+..+|+|+|..+++++..+ ..+++|.
T Consensus 164 ~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~ 242 (264)
T PRK07576 164 VDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQSVPLKRNGTKQDIANAALFLASDM-ASYITGV 242 (264)
T ss_pred HHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChh-hcCccCC
Confidence 9999999999999999999999999997 5532221 111111111 1112335678999999999987643 4466665
Q ss_pred Ee
Q psy4557 950 LI 951 (958)
Q Consensus 950 ~i 951 (958)
.+
T Consensus 243 ~~ 244 (264)
T PRK07576 243 VL 244 (264)
T ss_pred EE
Confidence 54
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=276.67 Aligned_cols=235 Identities=27% Similarity=0.357 Sum_probs=195.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.+.. +...++. ......+.+|++++++++++++++.+.++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~-~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 88 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA-EVAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVISAFG 88 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999987643 3333332 23566889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....++.+.+.++|++++++|+.|++++++.++|.|.+ ++.|+||++||..+..+.++...|+++|+|
T Consensus 89 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a 167 (255)
T PRK06841 89 RIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIA-AGGGKIVNLASQAGVVALERHVAYCASKAG 167 (255)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHh-cCCceEEEEcchhhccCCCCCchHHHHHHH
Confidence 9999999999987677778899999999999999999999999999974 346899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
+.+++++++.|++++||+||+|+||+|+|++............. ......++.+|+|+|+.++++++ +...+++|..+
T Consensus 168 ~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~-~~~~~~~G~~i 246 (255)
T PRK06841 168 VVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAGEKGERAKKLIPAGRFAYPEEIAAAALFLAS-DAAAMITGENL 246 (255)
T ss_pred HHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccchhHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-ccccCccCCEE
Confidence 99999999999999999999999999999986532211111111 11123457899999999999765 45556776655
Q ss_pred c
Q psy4557 952 E 952 (958)
Q Consensus 952 ~ 952 (958)
.
T Consensus 247 ~ 247 (255)
T PRK06841 247 V 247 (255)
T ss_pred E
Confidence 3
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=280.10 Aligned_cols=229 Identities=25% Similarity=0.327 Sum_probs=188.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++++||+++||||++|||+++|++|+++|++|++++|+.+.. ...++.++++|++++++++++++++.+.+
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD---------LPEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh---------cCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 468899999999999999999999999999999999986421 12357788999999999999999999999
Q ss_pred CCccEEEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC-CChhhhH
Q psy4557 792 GHIDILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA-GLAVYTG 868 (958)
Q Consensus 792 g~iDilInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~-~~~~Y~a 868 (958)
+++|++|||||... ...+.+.+.++|++++++|+.|++.+++.++|.|.+. +.|+||++||..+..+.+ +...|++
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~ii~isS~~~~~~~~~~~~~Y~~ 154 (260)
T PRK06523 76 GGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIAR-GSGVIIHVTSIQRRLPLPESTTAYAA 154 (260)
T ss_pred CCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEecccccCCCCCCcchhHH
Confidence 99999999999753 3456778899999999999999999999999999743 458999999999988866 7899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC---------C-hhhhhhh----ccccCCCCCCHHHHHHHH
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST---------D-RDVVDKY----DISKAVPVLTTKEISQSI 934 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~---------~-~~~~~~~----~~~~~~~~~~p~~ia~~i 934 (958)
+|+|+++|+++++.|++++||+||+|+||+|+|++..... + .+..... ...+..+..+|+|+|..+
T Consensus 155 sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~ 234 (260)
T PRK06523 155 AKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGIPLGRPAEPEEVAELI 234 (260)
T ss_pred HHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccCccCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999853210 0 0000000 001223467999999999
Q ss_pred HHHhcCCCCccccceEe
Q psy4557 935 IFALLQPSHSAVNSILI 951 (958)
Q Consensus 935 ~~~l~~~~~~~i~~~~i 951 (958)
+|+++ +...+++|..+
T Consensus 235 ~~l~s-~~~~~~~G~~~ 250 (260)
T PRK06523 235 AFLAS-DRAASITGTEY 250 (260)
T ss_pred HHHhC-cccccccCceE
Confidence 99775 44456666443
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=280.09 Aligned_cols=227 Identities=27% Similarity=0.444 Sum_probs=193.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCc-EEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS-IIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~-~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
|+++||||++|||+++|++|+++|++|++++|+.+.++++.+++...+.. ...+++|++++++++++++++.+.++++|
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 57999999999999999999999999999999998888887777654443 44578999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
++|||||......+.+.+.++|++++++|+.|++.+++.++|.|..++..|+||++||..+..+.++...|++||+|+.+
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~~~ 160 (272)
T PRK07832 81 VVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVALPWHAAYSASKFGLRG 160 (272)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCCCCCcchHHHHHHHHH
Confidence 99999998777778889999999999999999999999999999754446899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC------ChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHST------DRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~------~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|+++++.|+.++||+|++|+||+++|++..... ..............+..+|+++|..+++++.++..
T Consensus 161 ~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~~~~~~~~ 234 (272)
T PRK07832 161 LSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDRFRGHAVTPEKAAEKILAGVEKNRY 234 (272)
T ss_pred HHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHhcCCe
Confidence 999999999999999999999999999865321 11101111111123468999999999999875543
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=275.81 Aligned_cols=232 Identities=23% Similarity=0.286 Sum_probs=192.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++.+++.+.+ +.++.++++|+++.++++++++++.+.+
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL---GENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999987776655443 3457788999999999999999999999
Q ss_pred CCccEEEEccccCCC--ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 792 GHIDILVNNAGVMYF--TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 792 g~iDilInnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
|++|++|||||.... .++.+.+.++|++++++|+.|++.++++++|+|.+. .|+||++||..+..+.++...|++|
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~g~ii~~sS~~~~~~~~~~~~Y~~s 160 (255)
T PRK05717 83 GRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAH--NGAIVNLASTRARQSEPDTEAYAAS 160 (255)
T ss_pred CCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CcEEEEEcchhhcCCCCCCcchHHH
Confidence 999999999998643 456778999999999999999999999999999632 4899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
|+|+++++++++.+++. +|+||+|+||+++|++............. ......+..+|+|+|..+.++++ +...++++
T Consensus 161 Kaa~~~~~~~la~~~~~-~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~-~~~~~~~g 238 (255)
T PRK05717 161 KGGLLALTHALAISLGP-EIRVNAVSPGWIDARDPSQRRAEPLSEADHAQHPAGRVGTVEDVAAMVAWLLS-RQAGFVTG 238 (255)
T ss_pred HHHHHHHHHHHHHHhcC-CCEEEEEecccCcCCccccccchHHHHHHhhcCCCCCCcCHHHHHHHHHHHcC-chhcCccC
Confidence 99999999999999986 49999999999999975432111111111 11223467899999999999775 44456666
Q ss_pred eE
Q psy4557 949 IL 950 (958)
Q Consensus 949 ~~ 950 (958)
..
T Consensus 239 ~~ 240 (255)
T PRK05717 239 QE 240 (255)
T ss_pred cE
Confidence 43
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=282.20 Aligned_cols=229 Identities=27% Similarity=0.379 Sum_probs=190.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|+++||||++|||+++|+.|+++|++|++++|+.++++ ..++..+++|++++++++++++++.+.++
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 76 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ---------HENYQFVPTDVSSAEEVNHTVAEIIEKFG 76 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc---------cCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999999875432 13577889999999999999999999999
Q ss_pred CccEEEEccccCCCcc---------ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC
Q psy4557 793 HIDILVNNAGVMYFTL---------MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863 (958)
Q Consensus 793 ~iDilInnAG~~~~~~---------~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~ 863 (958)
++|++|||||...... +.+.+.++|++++++|+.|+++++++++|+|.+ ++.|+||++||.++..+.++.
T Consensus 77 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~ 155 (266)
T PRK06171 77 RIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVK-QHDGVIVNMSSEAGLEGSEGQ 155 (266)
T ss_pred CCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHh-cCCcEEEEEccccccCCCCCC
Confidence 9999999999854322 345789999999999999999999999999974 345899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCccc-CCCCCCCCC-----------hhhhhhhc---cccCCCCCCHH
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVK-TELLSHSTD-----------RDVVDKYD---ISKAVPVLTTK 928 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~-T~~~~~~~~-----------~~~~~~~~---~~~~~~~~~p~ 928 (958)
..|++||+|+++|+++++.|++++||+||+|+||+++ |++...... ....+.+. ..+..++.+|+
T Consensus 156 ~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 235 (266)
T PRK06171 156 SCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYTKTSTIPLGRSGKLS 235 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhcccccccCCCCCCHH
Confidence 9999999999999999999999999999999999997 666432110 11111111 11234678999
Q ss_pred HHHHHHHHHhcCCCCccccceEec
Q psy4557 929 EISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 929 ~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
|+|.++.|+++ +...+++|..|.
T Consensus 236 eva~~~~fl~s-~~~~~itG~~i~ 258 (266)
T PRK06171 236 EVADLVCYLLS-DRASYITGVTTN 258 (266)
T ss_pred Hhhhheeeeec-cccccceeeEEE
Confidence 99999999765 555688887664
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=274.22 Aligned_cols=231 Identities=24% Similarity=0.348 Sum_probs=194.4
Q ss_pred EEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
++||||++|||+++|++|+++|++|++++|+ .++++++.+++.+.+.++.++++|+++.+++.++++++.+.++++|++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l 80 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV 80 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5899999999999999999999999998875 456777777776666678899999999999999999999999999999
Q ss_pred EEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHHH
Q psy4557 798 VNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGIS 877 (958)
Q Consensus 798 InnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l~ 877 (958)
|||||+....++.+.+.++|+.++++|+.|++++++.+++.|.+.++.|+||++||.++..+.++...|+++|+++.+++
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sK~a~~~~~ 160 (239)
T TIGR01831 81 VLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNRGQVNYSAAKAGLIGAT 160 (239)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCCCCcchHHHHHHHHHHH
Confidence 99999987777778899999999999999999999988655543445689999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 878 GALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 878 ~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
++++.|+.++||+|++|+||+++|+|....... ...........+..+|+|+++.++|+++ +...+++|..|
T Consensus 161 ~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~va~~~~~l~~-~~~~~~~g~~~ 232 (239)
T TIGR01831 161 KALAVELAKRKITVNCIAPGLIDTEMLAEVEHD-LDEALKTVPMNRMGQPAEVASLAGFLMS-DGASYVTRQVI 232 (239)
T ss_pred HHHHHHHhHhCeEEEEEEEccCccccchhhhHH-HHHHHhcCCCCCCCCHHHHHHHHHHHcC-chhcCccCCEE
Confidence 999999999999999999999999987543211 1111111222357799999999999765 54567777554
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=274.32 Aligned_cols=228 Identities=22% Similarity=0.365 Sum_probs=196.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEE-EecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVA-VARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~-~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
|++|+++||||++|||+++|+.|+++|++|++ ..|+.++++++.+++...+.++.++.+|++++++++++++++.+.++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999877 47888888888888876667788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||.....++.+.+.++|++++++|+.|++.++++++|.|.+ ++.|+||++||..+..+.++...|++||++
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~g~iv~~sS~~~~~~~~~~~~y~~sK~a 160 (250)
T PRK08063 82 RLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEK-VGGGKIISLSSLGSIRYLENYTTVGVSKAA 160 (250)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCeEEEEEcchhhccCCCCccHHHHHHHH
Confidence 9999999999887777888899999999999999999999999999974 346899999999988888899999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh-hhhhhc-cccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD-VVDKYD-ISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~-~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+++|+++++.++.+.||+||+|+||++.|++........ ...... .....+..+++|+|+.+++++.++.
T Consensus 161 ~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~ 232 (250)
T PRK08063 161 LEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKTPAGRMVEPEDVANAVLFLCSPEA 232 (250)
T ss_pred HHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCchh
Confidence 999999999999999999999999999999865432211 111111 1122346899999999999876554
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=274.53 Aligned_cols=234 Identities=25% Similarity=0.345 Sum_probs=191.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++++|+++||||++|||+++|+.|+++|++|+++.+ +.++++++..++ +.++.++++|++++++++++++++.+.+
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL---GDRAIALQADVTDREQVQAMFATATEHF 78 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999998755 555566555544 2467789999999999999999999999
Q ss_pred CC-ccEEEEccccCC------CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 792 GH-IDILVNNAGVMY------FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 792 g~-iDilInnAG~~~------~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
|+ +|++|||||+.. ..++.+.+.++|++++++|+.|++.+++.++|.|.+ .+.|+||++||..+..+.+++.
T Consensus 79 g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~iss~~~~~~~~~~~ 157 (253)
T PRK08642 79 GKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMRE-QGFGRIINIGTNLFQNPVVPYH 157 (253)
T ss_pred CCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHh-cCCeEEEEECCccccCCCCCcc
Confidence 98 999999999742 234678899999999999999999999999999974 3458999999998887777888
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
.|++||+|+++|+++++.+++++|||||+|+||+++|++......+....... .....++.+|+|+|..++|+++. ..
T Consensus 158 ~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~ 236 (253)
T PRK08642 158 DYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATPDEVFDLIAATTPLRKVTTPQEFADAVLFFASP-WA 236 (253)
T ss_pred chHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCc-hh
Confidence 99999999999999999999999999999999999998644322222211111 11224578999999999997764 44
Q ss_pred ccccceEe
Q psy4557 944 SAVNSILI 951 (958)
Q Consensus 944 ~~i~~~~i 951 (958)
.+++|..+
T Consensus 237 ~~~~G~~~ 244 (253)
T PRK08642 237 RAVTGQNL 244 (253)
T ss_pred cCccCCEE
Confidence 56666655
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=277.58 Aligned_cols=235 Identities=25% Similarity=0.332 Sum_probs=197.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh-hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~-~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..++||+++||||++|||+++|++|+++|++|++++|+.+ .++++.+.+...+.++.++.+|+++.+++.++++++.+.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999853 456666666555567888999999999999999999999
Q ss_pred cCCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 791 LGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 791 ~g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
++++|++|||||... ...+.+.+.++|++++++|+.|++.+++++++.|. ..|+||++||.++..+.++...|++|
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~---~~g~iV~isS~~~~~~~~~~~~Y~~s 198 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLK---QGSAIINTGSITGYEGNETLIDYSAT 198 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHh---hCCeEEEEecccccCCCCCcchhHHH
Confidence 999999999999864 35677889999999999999999999999999985 24799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
|+|+.+|+++++.++.++||+|++|+||+++|++.......+....+. .....++.+|+|+|+.++++++.. ...+++
T Consensus 199 K~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ll~~~-~~~~~G 277 (290)
T PRK06701 199 KGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFDEEKVSQFGSNTPMQRPGQPEELAPAYVFLASPD-SSYITG 277 (290)
T ss_pred HHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccCHHHHHHHHhcCCcCCCcCHHHHHHHHHHHcCcc-cCCccC
Confidence 999999999999999999999999999999999865432222222221 112345788999999999977654 345555
Q ss_pred eE
Q psy4557 949 IL 950 (958)
Q Consensus 949 ~~ 950 (958)
..
T Consensus 278 ~~ 279 (290)
T PRK06701 278 QM 279 (290)
T ss_pred cE
Confidence 43
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=279.68 Aligned_cols=220 Identities=35% Similarity=0.445 Sum_probs=187.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+++|+++||||++|||+++|++|+++|++|++++|+.++++++.+ . .+.++.+|+++.++++++++++.+.+++
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~--~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L--GVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C--CCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 368999999999999999999999999999999999887765542 1 3667889999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+ ++.|+||++||..+..+.++...|++||+++
T Consensus 75 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~-~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa~ 153 (273)
T PRK06182 75 IDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRA-QRSGRIINISSMGGKIYTPLGAWYHATKFAL 153 (273)
T ss_pred CCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHh-cCCCEEEEEcchhhcCCCCCccHhHHHHHHH
Confidence 999999999987778889999999999999999999999999999974 4468999999999988888888999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--------hhhh-------hhhc-cccCCCCCCHHHHHHHHHHH
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--------RDVV-------DKYD-ISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--------~~~~-------~~~~-~~~~~~~~~p~~ia~~i~~~ 937 (958)
++|+++++.|+.++||+|++|+||+++|++...... .... ..+. .....+..+|+++|++++++
T Consensus 154 ~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~~~ 233 (273)
T PRK06182 154 EGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRSTYGSGRLSDPSVIADAISKA 233 (273)
T ss_pred HHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999998532100 0000 0011 11223567999999999998
Q ss_pred hcC
Q psy4557 938 LLQ 940 (958)
Q Consensus 938 l~~ 940 (958)
+..
T Consensus 234 ~~~ 236 (273)
T PRK06182 234 VTA 236 (273)
T ss_pred HhC
Confidence 875
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=306.12 Aligned_cols=234 Identities=23% Similarity=0.356 Sum_probs=196.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.+||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++..+++|++++++++++++++.+.+|+
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL---GPDHHALAMDVSDEAQIREGFEQLHREFGR 79 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCceeEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 47999999999999999999999999999999999998888777665 345778899999999999999999999999
Q ss_pred ccEEEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 794 IDILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 794 iDilInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+|+||||||+.. ..++.+.+.++|++++++|+.|++.++++++|+|.+.+.+++||++||.++..+.++...|+++|+
T Consensus 80 iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~~~Y~asKa 159 (520)
T PRK06484 80 IDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALPKRTAYSASKA 159 (520)
T ss_pred CCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCCCCchHHHHHH
Confidence 999999999842 346778899999999999999999999999999975444459999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh--hhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV--VDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~--~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
|+.+|+++|+.|+.+.||+|++|+||+|+|+|......... .... ......+..+|+++|+.+.|+++.+ ..++++
T Consensus 160 al~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~v~~l~~~~-~~~~~G 238 (520)
T PRK06484 160 AVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSRIPLGRLGRPEEIAEAVFFLASDQ-ASYITG 238 (520)
T ss_pred HHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhcCCCCCCcCHHHHHHHHHHHhCcc-ccCccC
Confidence 99999999999999999999999999999998653211110 0101 1112234679999999999977643 345555
Q ss_pred eEe
Q psy4557 949 ILI 951 (958)
Q Consensus 949 ~~i 951 (958)
..+
T Consensus 239 ~~~ 241 (520)
T PRK06484 239 STL 241 (520)
T ss_pred ceE
Confidence 444
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=274.04 Aligned_cols=244 Identities=22% Similarity=0.388 Sum_probs=208.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+.+|+++||||++|||+++|++|+++|++|++++|+.+.+++..+.+...+.++.++.+|+++++++.++++++.+.++
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALG 86 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 45778999999999999999999999999999999998888877777765566788889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||........+.+.+.|++++++|+.|++.+++.++|.|.++ ..|+||++||..+..+.++.+.|+++|++
T Consensus 87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~a 165 (274)
T PRK07775 87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIER-RRGDLIFVGSDVALRQRPHMGAYGAAKAG 165 (274)
T ss_pred CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCceEEEECChHhcCCCCCcchHHHHHHH
Confidence 99999999998776667778899999999999999999999999999743 46899999999999888888999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh---hhhhc---cccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV---VDKYD---ISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~---~~~~~---~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
+++++++++.++.+.||+|++|+||+++|++......... ..... .......+.++|+|+++++++..+...++
T Consensus 166 ~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~~~~~~ 245 (274)
T PRK07775 166 LEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWGQARHDYFLRASDLARAITFVAETPRGAHV 245 (274)
T ss_pred HHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhcccccccccCHHHHHHHHHHHhcCCCCCCe
Confidence 9999999999999999999999999999997543211100 01110 11123478999999999999988877889
Q ss_pred cceEecCCCCC
Q psy4557 947 NSILIEPPLAS 957 (958)
Q Consensus 947 ~~~~i~p~~~~ 957 (958)
..+.++|..+.
T Consensus 246 ~~~~~~~~~~~ 256 (274)
T PRK07775 246 VNMEVQPEAPL 256 (274)
T ss_pred eEEeeccCCCC
Confidence 99999997764
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=283.74 Aligned_cols=234 Identities=18% Similarity=0.204 Sum_probs=188.8
Q ss_pred EEEcCCchHHHHHHHHHHHcC-CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEEE
Q psy4557 720 FVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILV 798 (958)
Q Consensus 720 lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilI 798 (958)
|||||++|||+++|++|+++| ++|++++|+.++++++.+++...+.++.++++|+++.++++++++++.+.++++|+||
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI 80 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV 80 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 699999999999999999999 9999999999888888877754455678889999999999999999998899999999
Q ss_pred EccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEecCccCcCC-----------------
Q psy4557 799 NNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRR-PGHILNISSNAGVRP----------------- 859 (958)
Q Consensus 799 nnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~-~g~IV~isS~~g~~~----------------- 859 (958)
||||+... .++.+.+.++|+++|++|+.|++.+++.++|.|.+.+. +|+||++||.++..+
T Consensus 81 nnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~~ 160 (308)
T PLN00015 81 CNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 160 (308)
T ss_pred ECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhhh
Confidence 99998643 34567889999999999999999999999999974432 589999999987431
Q ss_pred ------------------CCCChhhhHHHHHHHHHHHHHHHHhCC-CCcEEEEEECCcc-cCCCCCCCCChhhhh--hhc
Q psy4557 860 ------------------FAGLAVYTGTKYFIEGISGALRQEVSD-RNIKVTCIQAGDV-KTELLSHSTDRDVVD--KYD 917 (958)
Q Consensus 860 ------------------~~~~~~Y~asKaa~~~l~~~la~el~~-~gIrv~~v~PG~v-~T~~~~~~~~~~~~~--~~~ 917 (958)
.+++.+|++||+|+..+++.++.++++ .||+|++|+||+| .|+|........... ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~~~~~~~~~~ 240 (308)
T PLN00015 161 LAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQ 240 (308)
T ss_pred hhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccccHHHHHHHHHHH
Confidence 124567999999999999999999975 6999999999999 799875422110000 000
Q ss_pred cccCCCCCCHHHHHHHHHHHhcCCCCccccceEecCC
Q psy4557 918 ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEPP 954 (958)
Q Consensus 918 ~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p~ 954 (958)
.....+..+|++.|..++++++++. ...+|..+.+.
T Consensus 241 ~~~~~~~~~pe~~a~~~~~l~~~~~-~~~~G~~~~~~ 276 (308)
T PLN00015 241 KYITKGYVSEEEAGKRLAQVVSDPS-LTKSGVYWSWN 276 (308)
T ss_pred HHHhcccccHHHhhhhhhhhccccc-cCCCccccccC
Confidence 1111235799999999999777654 35788887753
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=271.19 Aligned_cols=236 Identities=32% Similarity=0.535 Sum_probs=198.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
++++||||++|||.++|+.|+++|++|++++|+.++++++.+.+ +.++.++.+|+++.++++++++++.+.++++|+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 77 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDV 77 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46899999999999999999999999999999998887776554 245778899999999999999999999999999
Q ss_pred EEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 797 LVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 797 lInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
+|||||+.. ..++.+.+.++|++++++|+.|++.+++.++|.|.+ .+.|+||++||.++..+.++...|+++|+++++
T Consensus 78 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~isS~~~~~~~~~~~~Y~~sK~~~~~ 156 (248)
T PRK10538 78 LVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVE-RNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQ 156 (248)
T ss_pred EEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCcEEEEECCcccCCCCCCCchhHHHHHHHHH
Confidence 999999853 345677899999999999999999999999999974 345899999999999899999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-CChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecCC
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-TDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEPP 954 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p~ 954 (958)
|++.++.++.++||+|++|+||++.|++.... ................+++|+|+|+++++++..+....+.++.+.|.
T Consensus 157 ~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~~~~~~~~~ 236 (248)
T PRK10538 157 FSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVATLPAHVNINTLEMMPV 236 (248)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHHHHhhccccCCCCHHHHHHHHHHHhcCCCcccchhhccccc
Confidence 99999999999999999999999985543221 11000000011112345799999999999999999999999998887
Q ss_pred CC
Q psy4557 955 LA 956 (958)
Q Consensus 955 ~~ 956 (958)
+.
T Consensus 237 ~~ 238 (248)
T PRK10538 237 TQ 238 (248)
T ss_pred hh
Confidence 54
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=274.11 Aligned_cols=215 Identities=26% Similarity=0.405 Sum_probs=187.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+ ++.++.+|+++.+++.++++++.+++|++|
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA-RVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 4789999999999999999999999999999999988888877765433 788899999999999999999999999999
Q ss_pred EEEEccccCCCcccc-CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLME-KYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 796 ilInnAG~~~~~~~~-~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
++|||||........ +.+.++|+.++++|+.|++++++.++|.|.+ ++.|+||++||.++..+.++...|++||++++
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~-~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~ 159 (257)
T PRK07024 81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRA-ARRGTLVGIASVAGVRGLPGAGAYSASKAAAI 159 (257)
T ss_pred EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHh-cCCCEEEEEechhhcCCCCCCcchHHHHHHHH
Confidence 999999986543333 3788999999999999999999999999974 44689999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+|+++++.|+.++||+|++|+||+|.|++..... +. .....+|+++|+.++..+.+..
T Consensus 160 ~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~-------~~---~~~~~~~~~~a~~~~~~l~~~~ 217 (257)
T PRK07024 160 KYLESLRVELRPAGVRVVTIAPGYIRTPMTAHNP-------YP---MPFLMDADRFAARAARAIARGR 217 (257)
T ss_pred HHHHHHHHHhhccCcEEEEEecCCCcCchhhcCC-------CC---CCCccCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999754211 10 0123689999999999887654
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=272.51 Aligned_cols=234 Identities=25% Similarity=0.348 Sum_probs=199.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||++|||++++++|+++|++|++++|+.++++++.+++...+.++..+.+|++++++++++++++.+.++++|+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 80 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV 80 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 68999999999999999999999999999999988888888877766667888999999999999999999999999999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHH
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l 876 (958)
||||||.....++.+.+.++|++++++|+.|++++++.+++.|.+.+.+|+||++||..+..+.++++.|+++|+++++|
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~ 160 (254)
T TIGR02415 81 MVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNPILSAYSSTKFAVRGL 160 (254)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCCCCcchHHHHHHHHHH
Confidence 99999998777788899999999999999999999999999998555458999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh----------hhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD----------VVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 877 ~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~----------~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
+++++.|+++.||+|++|+||+++|+++....... ....+ ......+..+|++++.+++|+++.+ ...
T Consensus 161 ~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~~~ 239 (254)
T TIGR02415 161 TQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEFSSEIALGRPSEPEDVAGLVSFLASED-SDY 239 (254)
T ss_pred HHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHHHHhhCCCCCCCCHHHHHHHHHhhcccc-cCC
Confidence 99999999999999999999999999864321100 00111 1112345789999999999977654 445
Q ss_pred ccceEe
Q psy4557 946 VNSILI 951 (958)
Q Consensus 946 i~~~~i 951 (958)
++|..+
T Consensus 240 ~~g~~~ 245 (254)
T TIGR02415 240 ITGQSI 245 (254)
T ss_pred ccCcEE
Confidence 555443
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=283.37 Aligned_cols=236 Identities=23% Similarity=0.305 Sum_probs=192.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
...++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++. .+.++.+|+++.++++++++++.+.
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999999999999988887776663 2667899999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC------------
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR------------ 858 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~------------ 858 (958)
++++|+||||||+... ..+.+.++|+..+++|+.|++.+++.++|.|.+. +.|+||++||.++..
T Consensus 97 ~~~iD~li~nAg~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~~~~~~~~~~~~~ 173 (315)
T PRK06196 97 GRRIDILINNAGVMAC--PETRVGDGWEAQFATNHLGHFALVNLLWPALAAG-AGARVVALSSAGHRRSPIRWDDPHFTR 173 (315)
T ss_pred CCCCCEEEECCCCCCC--CCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEECCHHhccCCCCccccCccC
Confidence 9999999999998643 2345678899999999999999999999999743 458999999986532
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhh--hhc---cccCCCCCCHHHHHHH
Q psy4557 859 PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVD--KYD---ISKAVPVLTTKEISQS 933 (958)
Q Consensus 859 ~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~--~~~---~~~~~~~~~p~~ia~~ 933 (958)
+.+++..|++||+|+..|++.++.++.++||+|++|+||++.|++........... ... .....+..+|+++|..
T Consensus 174 ~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 253 (315)
T PRK06196 174 GYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGNPIDPGFKTPAQGAAT 253 (315)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhhhhhhhcCCHhHHHHH
Confidence 34456789999999999999999999999999999999999999865432211110 000 0000135689999999
Q ss_pred HHHHhcCCCCccccceEecC
Q psy4557 934 IIFALLQPSHSAVNSILIEP 953 (958)
Q Consensus 934 i~~~l~~~~~~~i~~~~i~p 953 (958)
++|++..+.....++..+.+
T Consensus 254 ~~~l~~~~~~~~~~g~~~~~ 273 (315)
T PRK06196 254 QVWAATSPQLAGMGGLYCED 273 (315)
T ss_pred HHHHhcCCccCCCCCeEeCC
Confidence 99999887766666766644
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=275.21 Aligned_cols=235 Identities=23% Similarity=0.325 Sum_probs=198.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+++|+++||||++|||+++|++|+++|++|++++|+.+.++++.+++...+.++..+.+|++++++++++++++.+.+|+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999999999998888888888665667888999999999999999999999999
Q ss_pred ccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 794 IDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 794 iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+|++|||||.... .++.+.+.++|++++++|+.|++.+++++.+.|.+. +|+||++||.++..+.+++..|+++|++
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~ii~~sS~~~~~~~~~~~~Y~~sK~a 160 (258)
T PRK07890 83 VDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAES--GGSIVMINSMVLRHSQPKYGAYKMAKGA 160 (258)
T ss_pred ccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhC--CCEEEEEechhhccCCCCcchhHHHHHH
Confidence 9999999998543 567788899999999999999999999999998633 4799999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----------Chhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----------DRDVVDKY-DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----------~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+.+++++++.|++++||+|++|+||++.|++..... .+...... ......+..+|+|++.+++|+++.
T Consensus 161 ~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~- 239 (258)
T PRK07890 161 LLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAANSDLKRLPTDDEVASAVLFLASD- 239 (258)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhcCCccccCCHHHHHHHHHHHcCH-
Confidence 999999999999999999999999999998753210 01111111 111223467899999999997664
Q ss_pred CCccccceEe
Q psy4557 942 SHSAVNSILI 951 (958)
Q Consensus 942 ~~~~i~~~~i 951 (958)
...+++|..+
T Consensus 240 ~~~~~~G~~i 249 (258)
T PRK07890 240 LARAITGQTL 249 (258)
T ss_pred hhhCccCcEE
Confidence 3346666544
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-30 Score=279.06 Aligned_cols=221 Identities=26% Similarity=0.364 Sum_probs=186.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc-CC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL-GH 793 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g~ 793 (958)
.+|+++||||++|||+++|++|+++|++|++++|+.+.++++.+ . .+..+.+|+++.++++++++.+.+.+ |+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~--~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~ 76 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E--GLEAFQLDYAEPESIAALVAQVLELSGGR 76 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C--CceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999999999999887766543 1 36678999999999999999997766 68
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|++|||||+.....+.+.+.++|+.++++|+.|++.+++.++|.|.+ ++.|+||++||.++..+.++.+.|++||+|+
T Consensus 77 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~-~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~ 155 (277)
T PRK05993 77 LDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRK-QGQGRIVQCSSILGLVPMKYRGAYNASKFAI 155 (277)
T ss_pred ccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhh-cCCCEEEEECChhhcCCCCccchHHHHHHHH
Confidence 999999999988778888999999999999999999999999999974 4468999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh----------hhhhhh-------c--cccCCCCCCHHHHHHHH
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR----------DVVDKY-------D--ISKAVPVLTTKEISQSI 934 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~----------~~~~~~-------~--~~~~~~~~~p~~ia~~i 934 (958)
++|+++|+.|+.++||+|++|+||+++|+|....... .....+ . ........+|+++|+.+
T Consensus 156 ~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~i 235 (277)
T PRK05993 156 EGLSLTLRMELQGSGIHVSLIEPGPIETRFRANALAAFKRWIDIENSVHRAAYQQQMARLEGGGSKSRFKLGPEAVYAVL 235 (277)
T ss_pred HHHHHHHHHHhhhhCCEEEEEecCCccCchhhHHHHHHhhhhccccchhHHHHHHHHHHHHhhhhccccCCCHHHHHHHH
Confidence 9999999999999999999999999999986532100 000000 0 00112246899999999
Q ss_pred HHHhcCCC
Q psy4557 935 IFALLQPS 942 (958)
Q Consensus 935 ~~~l~~~~ 942 (958)
+..+.++.
T Consensus 236 ~~a~~~~~ 243 (277)
T PRK05993 236 LHALTAPR 243 (277)
T ss_pred HHHHcCCC
Confidence 99887654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=269.99 Aligned_cols=238 Identities=24% Similarity=0.372 Sum_probs=204.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..+++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++++|+++.++++++++++.+.+
T Consensus 3 ~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 3 SNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 34789999999999999999999999999999999999998888888776666678899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|++|||||......+.+.+.++|++++++|+.|++.+++.++|.|.+ ++.|++|++||..+..+.++...|+++|+
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~y~~sK~ 161 (250)
T PRK12939 83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRD-SGRGRIVNLASDTALWGAPKLGAYVASKG 161 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCeEEEEECchhhccCCCCcchHHHHHH
Confidence 99999999999987777788899999999999999999999999999974 34689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
++++++++++.+++..||+|++|+||+++|++............+. .....++.+|+|+|+.+++++..+ ..+++|..
T Consensus 162 ~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~ 240 (250)
T PRK12939 162 AVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPADERHAYYLKGRALERLQVPDDVAGAVLFLLSDA-ARFVTGQL 240 (250)
T ss_pred HHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCChHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcc-ccCccCcE
Confidence 9999999999999999999999999999999875432211111111 122345689999999999977544 44666655
Q ss_pred e
Q psy4557 951 I 951 (958)
Q Consensus 951 i 951 (958)
|
T Consensus 241 i 241 (250)
T PRK12939 241 L 241 (250)
T ss_pred E
Confidence 4
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=273.74 Aligned_cols=233 Identities=22% Similarity=0.306 Sum_probs=186.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC----hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR----IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~----~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
..+++|+++||||++|||+++|+.|+++|++|++++++ .+.++++.+++...+.++..+++|++++++++++++++
T Consensus 4 ~~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 83 (257)
T PRK12744 4 HSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHH
Confidence 45789999999999999999999999999997777653 34455666666555557888999999999999999999
Q ss_pred HHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEe-cCccCcCCCCCChhh
Q psy4557 788 LAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNI-SSNAGVRPFAGLAVY 866 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~i-sS~~g~~~~~~~~~Y 866 (958)
.+.++++|++|||||+....++.+.+.++|++++++|+.|++.+++.++|.|. ..|+|+++ ||..+ .+.+++..|
T Consensus 84 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~---~~~~iv~~~ss~~~-~~~~~~~~Y 159 (257)
T PRK12744 84 KAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLN---DNGKIVTLVTSLLG-AFTPFYSAY 159 (257)
T ss_pred HHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhc---cCCCEEEEecchhc-ccCCCcccc
Confidence 99999999999999997767778889999999999999999999999999885 23677776 45444 356788999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhh---hc-cc--cCCCCCCHHHHHHHHHHHhcC
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDK---YD-IS--KAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~---~~-~~--~~~~~~~p~~ia~~i~~~l~~ 940 (958)
++||+|+++|+++++.|+++.||+||+|+||++.|++............ .. .. ...++.+|+|+|..+.|+++.
T Consensus 160 ~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~ 239 (257)
T PRK12744 160 AGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAEAVAYHKTAAALSPFSKTGLTDIEDIVPFIRFLVTD 239 (257)
T ss_pred hhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccchhhcccccccccccccCCCCCHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999998643222111100 00 00 112578899999999997773
Q ss_pred CCCccccceE
Q psy4557 941 PSHSAVNSIL 950 (958)
Q Consensus 941 ~~~~~i~~~~ 950 (958)
..+++|..
T Consensus 240 --~~~~~g~~ 247 (257)
T PRK12744 240 --GWWITGQT 247 (257)
T ss_pred --cceeecce
Confidence 34565543
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=274.54 Aligned_cols=232 Identities=25% Similarity=0.306 Sum_probs=193.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+|+||+++||||++|||+++|++|+++|++|++++|+.++. ++.+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999998777 6666666666678899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|++|||||......+.+.+ ++|++.+++|+.+++.+++.++|.|.+ ..|+||++||..+..+.+++..|++||+
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~-~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~~iv~~ss~~~~~~~~~~~~Y~~sK~ 158 (258)
T PRK08628 82 GRIDGLVNNAGVNDGVGLEAGR-EAFVASLERNLIHYYVMAHYCLPHLKA--SRGAIVNISSKTALTGQGGTSGYAAAKG 158 (258)
T ss_pred CCCCEEEECCcccCCCcccCCH-HHHHHHHhhhhHHHHHHHHHHHHHhhc--cCcEEEEECCHHhccCCCCCchhHHHHH
Confidence 9999999999986554455544 999999999999999999999998863 3489999999999999899999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----CChh-hhhhh--ccccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----TDRD-VVDKY--DISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~~~~-~~~~~--~~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
++++++++++.|+.++||+||+|+||.++|++.... .... ..... ..+...++.+|+++|+.++++++.+ ..
T Consensus 159 a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~ 237 (258)
T PRK08628 159 AQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKIPLGHRMTTAEEIADTAVFLLSER-SS 237 (258)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcCCccccCCCHHHHHHHHHHHhChh-hc
Confidence 999999999999999999999999999999985421 1111 00111 0111125789999999999977654 34
Q ss_pred cccc
Q psy4557 945 AVNS 948 (958)
Q Consensus 945 ~i~~ 948 (958)
.+++
T Consensus 238 ~~~g 241 (258)
T PRK08628 238 HTTG 241 (258)
T ss_pred cccC
Confidence 4444
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=275.62 Aligned_cols=231 Identities=20% Similarity=0.283 Sum_probs=182.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhc-CCCcEEEEEecCCCHHHH----HHHHHHHHHH
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQN-APGSIIVKKLDVTIENDV----KKVVREVLAE 790 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v----~~~~~~~~~~ 790 (958)
++++||||++|||+++|++|+++|++|++++| +.+.++++.+++.. .+.+...+.+|++|++++ +++++.+.+.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~ 81 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA 81 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999875 46777777777743 244677789999999865 5566666678
Q ss_pred cCCccEEEEccccCCCccccCCCH-----------HHHHHHHHHHhHHHHHHHHHHHHHHHhCC-----CCcEEEEecCc
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKL-----------EEWNAMINVNIKGVLHCIGNILPSMLHSR-----RPGHILNISSN 854 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~-----------~~~~~~~~vN~~g~~~~~~~~l~~m~~~~-----~~g~IV~isS~ 854 (958)
+|++|+||||||.....++.+.+. ++|.+++++|+.|++.++++++|+|.... ..|+||+++|.
T Consensus 82 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~ 161 (267)
T TIGR02685 82 FGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDA 161 (267)
T ss_pred cCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhh
Confidence 899999999999875555444333 36999999999999999999999985321 24789999999
Q ss_pred cCcCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc--cccCCCCCCHHHHHH
Q psy4557 855 AGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD--ISKAVPVLTTKEISQ 932 (958)
Q Consensus 855 ~g~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~--~~~~~~~~~p~~ia~ 932 (958)
.+..+.+++..|++||+|+++|+++|+.|++++||+|++|+||++.|+.... ......+. .+...+..+|++++.
T Consensus 162 ~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~va~ 238 (267)
T TIGR02685 162 MTDQPLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP---FEVQEDYRRKVPLGQREASAEQIAD 238 (267)
T ss_pred hccCCCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc---hhHHHHHHHhCCCCcCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999998763211 11111111 111124679999999
Q ss_pred HHHHHhcCCCCccccceEe
Q psy4557 933 SIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 933 ~i~~~l~~~~~~~i~~~~i 951 (958)
.++|+++ +...+++|..+
T Consensus 239 ~~~~l~~-~~~~~~~G~~~ 256 (267)
T TIGR02685 239 VVIFLVS-PKAKYITGTCI 256 (267)
T ss_pred HHHHHhC-cccCCcccceE
Confidence 9999775 44556666544
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=268.90 Aligned_cols=236 Identities=28% Similarity=0.435 Sum_probs=198.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh-hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~-~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++++|+++||||++|||+++|+.|+++|++|+++.|+. ...+++.+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999887754 45666667776666678899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|++|||||.....++.+.+.++|++++++|+.|++.++++++|.|. ..|+||++||.++..+.+++..|+++|+
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~---~~~~iv~~ss~~~~~~~~~~~~Y~~sK~ 158 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLG---QGGRIINLSTSVIALPLPGYGPYAASKA 158 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhc---cCcEEEEEeeccccCCCCCCchhHHHHH
Confidence 9999999999987766777889999999999999999999999999985 2489999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+++.++++++.|+++.||+|++|+||+++|+|............+. ..+..+..+|++++..++|+++. ...++++..
T Consensus 159 a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~-~~~~~~g~~ 237 (245)
T PRK12937 159 AVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKSAEQIDQLAGLAPLERLGTPEEIAAAVAFLAGP-DGAWVNGQV 237 (245)
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc-cccCccccE
Confidence 9999999999999999999999999999999864322222222221 12233567999999999997754 445666655
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
+.
T Consensus 238 ~~ 239 (245)
T PRK12937 238 LR 239 (245)
T ss_pred EE
Confidence 53
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=268.50 Aligned_cols=207 Identities=15% Similarity=0.222 Sum_probs=171.8
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
.++||||++|||+++|++|+++|++|++++|+.++++++.+++ .+..+++|++++++++++++++.+ ++|++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~---~id~l 73 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL-----DVDAIVCDNTDPASLEEARGLFPH---HLDTI 73 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCcEEecCCCCHHHHHHHHHHHhh---cCcEE
Confidence 4899999999999999999999999999999998888776554 245678999999999999887653 69999
Q ss_pred EEccccCCC------ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 798 VNNAGVMYF------TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 798 InnAG~~~~------~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|||||.... ..+.+ +.++|++++++|+.|+++++|.++|.|. . +|+||++||.+ .++...|++||+
T Consensus 74 v~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~-~--~g~Iv~isS~~----~~~~~~Y~asKa 145 (223)
T PRK05884 74 VNVPAPSWDAGDPRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLR-S--GGSIISVVPEN----PPAGSAEAAIKA 145 (223)
T ss_pred EECCCccccCCCCcccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhh-c--CCeEEEEecCC----CCCccccHHHHH
Confidence 999986321 12333 5789999999999999999999999995 2 48999999986 356788999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
|+.+|+|+|+.|++++|||||+|+||+++|++..... ..+..+|+|++..+.|++ ++...+++|..+
T Consensus 146 al~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~~~~~------------~~p~~~~~~ia~~~~~l~-s~~~~~v~G~~i 212 (223)
T PRK05884 146 ALSNWTAGQAAVFGTRGITINAVACGRSVQPGYDGLS------------RTPPPVAAEIARLALFLT-TPAARHITGQTL 212 (223)
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEecCccCchhhhhcc------------CCCCCCHHHHHHHHHHHc-CchhhccCCcEE
Confidence 9999999999999999999999999999998743210 012348999999999965 466678888766
Q ss_pred cC
Q psy4557 952 EP 953 (958)
Q Consensus 952 ~p 953 (958)
.-
T Consensus 213 ~v 214 (223)
T PRK05884 213 HV 214 (223)
T ss_pred Ee
Confidence 43
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=273.74 Aligned_cols=225 Identities=23% Similarity=0.320 Sum_probs=196.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++++|+++++++.++++.+.+.++++|+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 57999999999999999999999999999999999988888888766677888999999999999999999999999999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHH
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l 876 (958)
||||||+.....+.+.+.++|++++++|+.|++.+++.++|.|.+ .+.|+||++||.++..+.++.+.|+++|+++.+|
T Consensus 81 lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~vsS~~~~~~~~~~~~Y~~sKaa~~~~ 159 (270)
T PRK05650 81 IVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKR-QKSGRIVNIASMAGLMQGPAMSSYNVAKAGVVAL 159 (270)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHh-CCCCEEEEECChhhcCCCCCchHHHHHHHHHHHH
Confidence 999999987777888899999999999999999999999999974 3468999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 877 ~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+++|+.|+.+.||+|++|+||+++|++...... +...............+++++|+.++..+.+..
T Consensus 160 ~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~~~l~~~~ 227 (270)
T PRK05650 160 SETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLEKSPITAADIADYIYQQVAKGE 227 (270)
T ss_pred HHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999998654321 111111111112245799999999999887654
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=271.93 Aligned_cols=216 Identities=19% Similarity=0.230 Sum_probs=183.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcC-CeEEEEecChhh-HHHHHHHhhcCCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDR-LENLKTSLQNAPG-SIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~-l~~~~~~l~~~~~-~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+|+++||||++|||+++|++|+++| ++|++++|+.++ ++++.+++...+. ++.++++|+++++++.++++++.+ +
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~-~ 85 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA-G 85 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh-c
Confidence 57899999999999999999999995 999999999886 8888777765443 688899999999999999999886 5
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|++|||+|+.....-...+.+...+++++|+.|++.+++.++|.|.++ +.|+||++||.++..+.++...|++||+
T Consensus 86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~-~~~~iv~isS~~g~~~~~~~~~Y~~sKa 164 (253)
T PRK07904 86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ-GFGQIIAMSSVAGERVRRSNFVYGSTKA 164 (253)
T ss_pred CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc-CCceEEEEechhhcCCCCCCcchHHHHH
Confidence 899999999998643221222455667899999999999999999999844 4689999999999888888889999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|+.+|+++|+.|+.++||+|++|+||+++|++...... .....+|+++|+.++..+.++..
T Consensus 165 a~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~~~~-----------~~~~~~~~~~A~~i~~~~~~~~~ 225 (253)
T PRK07904 165 GLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAHAKE-----------APLTVDKEDVAKLAVTAVAKGKE 225 (253)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEeeCceecchhccCCC-----------CCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999998653210 11246899999999998876654
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=281.53 Aligned_cols=229 Identities=22% Similarity=0.288 Sum_probs=186.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++.+|+++.++++++++++.+
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999888888777543 23578899999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC----------
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP---------- 859 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~---------- 859 (958)
.++++|+||||||+... ...+.+.++|+.++++|+.|++++++.++|.|.+. .|+||++||.++..+
T Consensus 90 ~~~~iD~li~nAG~~~~-~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~~~~~~~~~~~ 166 (313)
T PRK05854 90 EGRPIHLLINNAGVMTP-PERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRGAINWDDLNWE 166 (313)
T ss_pred hCCCccEEEECCccccC-CccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCCCcCccccccc
Confidence 99999999999998653 33456789999999999999999999999999633 589999999987543
Q ss_pred --CCCChhhhHHHHHHHHHHHHHHHHh--CCCCcEEEEEECCcccCCCCCCCCC-----hhhh-hhhccc--cCCCCCCH
Q psy4557 860 --FAGLAVYTGTKYFIEGISGALRQEV--SDRNIKVTCIQAGDVKTELLSHSTD-----RDVV-DKYDIS--KAVPVLTT 927 (958)
Q Consensus 860 --~~~~~~Y~asKaa~~~l~~~la~el--~~~gIrv~~v~PG~v~T~~~~~~~~-----~~~~-~~~~~~--~~~~~~~p 927 (958)
++++..|+.||+|+..|++.|+.++ ...||+||+|+||+|.|+|...... .... ...... ......++
T Consensus 167 ~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (313)
T PRK05854 167 RSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAARPEVGRDKDTLMVRLIRSLSARGFLVGTV 246 (313)
T ss_pred ccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCccccccccccchhHHHHHHHHHHhhcccccCCH
Confidence 3456789999999999999999864 4679999999999999998643211 0001 001100 11124588
Q ss_pred HHHHHHHHHHhcCCCC
Q psy4557 928 KEISQSIIFALLQPSH 943 (958)
Q Consensus 928 ~~ia~~i~~~l~~~~~ 943 (958)
++.|...++++.+|..
T Consensus 247 ~~ga~~~l~~a~~~~~ 262 (313)
T PRK05854 247 ESAILPALYAATSPDA 262 (313)
T ss_pred HHHHHHhhheeeCCCC
Confidence 9999999998777654
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=269.68 Aligned_cols=233 Identities=20% Similarity=0.271 Sum_probs=192.5
Q ss_pred CCCCCEEEEEcCCc--hHHHHHHHHHHHcCCeEEEEecC-----------hhhHHHHHHHhhcCCCcEEEEEecCCCHHH
Q psy4557 713 TLANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARR-----------IDRLENLKTSLQNAPGSIIVKKLDVTIEND 779 (958)
Q Consensus 713 ~l~~k~~lITGas~--GIG~aia~~la~~Ga~Vi~~~r~-----------~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~ 779 (958)
.+++|+++||||++ |||.++|++|+++|++|++++|+ ......+.+++...+.++..+.+|++++++
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 81 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYA 81 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 46899999999994 99999999999999999999987 222222555555556678899999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC
Q psy4557 780 VKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP 859 (958)
Q Consensus 780 v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~ 859 (958)
+.++++++.+.++++|++|||||+....++.+.+.++|++++++|+.|++.+++++++.|. .+..|+||++||..+..+
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~~iv~~ss~~~~~~ 160 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYD-GKAGGRIINLTSGQSLGP 160 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhh-hcCCeEEEEECCccccCC
Confidence 9999999999999999999999987777788889999999999999999999999999986 344689999999999988
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhc
Q psy4557 860 FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 860 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
.++...|++||+|+++++++++.|+..+||+|++|+||+++|++......... .......+..+|+++|+.+.+++.
T Consensus 161 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~l~~ 237 (256)
T PRK12748 161 MPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITEELKHHL---VPKFPQGRVGEPVDAARLIAFLVS 237 (256)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCChhHHHhh---hccCCCCCCcCHHHHHHHHHHHhC
Confidence 88999999999999999999999999999999999999999997542111100 111122346789999999998655
Q ss_pred CCCCccccceE
Q psy4557 940 QPSHSAVNSIL 950 (958)
Q Consensus 940 ~~~~~~i~~~~ 950 (958)
+....+++..
T Consensus 238 -~~~~~~~g~~ 247 (256)
T PRK12748 238 -EEAKWITGQV 247 (256)
T ss_pred -cccccccCCE
Confidence 4444555544
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=269.37 Aligned_cols=239 Identities=25% Similarity=0.361 Sum_probs=199.0
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+..+++||+++||||++|||.++|++|+++|++|++++|+.++++.+.+.+...+.++.++.+|+++.++++++++++.+
T Consensus 6 ~~~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 6 ELFDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred hhhCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999888888887766666788899999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHH-HHhCCCCcEEEEecCccCcCCCCC----Ch
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS-MLHSRRPGHILNISSNAGVRPFAG----LA 864 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~-m~~~~~~g~IV~isS~~g~~~~~~----~~ 864 (958)
.++++|++|||||.....++.+.+.+.|++++++|+.|++.+++++.|+ |. .++.|+||++||..+..+.+. ..
T Consensus 86 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~-~~~~~~~v~~sS~~~~~~~~~~~~~~~ 164 (259)
T PRK08213 86 RFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMI-PRGYGRIINVASVAGLGGNPPEVMDTI 164 (259)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHH-hcCCeEEEEECChhhccCCCccccCcc
Confidence 9999999999999876666777889999999999999999999999998 65 445689999999887766544 48
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
.|+++|+++++++++++++++++||++++|+||+++|++...... ...+... .....+..+|+++|..+.++++ +..
T Consensus 165 ~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~va~~~~~l~~-~~~ 242 (259)
T PRK08213 165 AYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGTLE-RLGEDLLAHTPLGRLGDDEDLKGAALLLAS-DAS 242 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhhhH-HHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccc
Confidence 899999999999999999999999999999999999998543221 1111111 1122346789999999999765 444
Q ss_pred ccccceEe
Q psy4557 944 SAVNSILI 951 (958)
Q Consensus 944 ~~i~~~~i 951 (958)
.+++|..+
T Consensus 243 ~~~~G~~~ 250 (259)
T PRK08213 243 KHITGQIL 250 (259)
T ss_pred cCccCCEE
Confidence 56666554
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=278.82 Aligned_cols=238 Identities=18% Similarity=0.238 Sum_probs=189.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcC-CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.+|+++||||++|||+++|++|+++| ++|++++|+.++++++.+++...+..+.++.+|+++.++++++++++.+.+++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 81 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP 81 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 58899999999999999999999999 99999999999888888777544456778899999999999999999988999
Q ss_pred ccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCcEEEEecCccCcCC------------
Q psy4557 794 IDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR-RPGHILNISSNAGVRP------------ 859 (958)
Q Consensus 794 iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~-~~g~IV~isS~~g~~~------------ 859 (958)
+|+||||||+... ....+.+.++|++++++|+.|++++++.++|.|.+.. +.|+||++||.++...
T Consensus 82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~ 161 (314)
T TIGR01289 82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANL 161 (314)
T ss_pred CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcccc
Confidence 9999999998543 2334678899999999999999999999999997542 2489999999987421
Q ss_pred ---------------------CCCChhhhHHHHHHHHHHHHHHHHhC-CCCcEEEEEECCcc-cCCCCCCCCChh--hhh
Q psy4557 860 ---------------------FAGLAVYTGTKYFIEGISGALRQEVS-DRNIKVTCIQAGDV-KTELLSHSTDRD--VVD 914 (958)
Q Consensus 860 ---------------------~~~~~~Y~asKaa~~~l~~~la~el~-~~gIrv~~v~PG~v-~T~~~~~~~~~~--~~~ 914 (958)
+.++.+|++||+|+..+++.|++++. ++||+|++|+||+| .|+|........ ...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~~~~~~ 241 (314)
T TIGR01289 162 GDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRTLFP 241 (314)
T ss_pred cccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHHHHHHH
Confidence 12456799999999999999999985 47999999999999 699875422110 000
Q ss_pred hhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecC
Q psy4557 915 KYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953 (958)
Q Consensus 915 ~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p 953 (958)
.+.........+|++.|..+++++..+... .+|.++++
T Consensus 242 ~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~-~~g~~~~~ 279 (314)
T TIGR01289 242 PFQKYITKGYVSEEEAGERLAQVVSDPKLK-KSGVYWSW 279 (314)
T ss_pred HHHHHHhccccchhhhhhhhHHhhcCcccC-CCceeeec
Confidence 000000112468999999999988765542 46667765
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=270.71 Aligned_cols=234 Identities=21% Similarity=0.309 Sum_probs=195.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC--CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP--GSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+|+++||||++|||+++|+.|+++|++|++++|+.+.++++.+.+.... .++..+.+|+++.+++.++++++.+.+++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999999999999888888777665432 35788999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|++|||||......+.+.+.++|++++++|+.|++++++++++.|.+++..|+||++||.++..+.+....|++||+|+
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sKaa~ 161 (259)
T PRK12384 82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGG 161 (259)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCCCCchhHHHHHHH
Confidence 99999999988777788899999999999999999999999999997543358999999999988888899999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcc-cCCCCCCCC----------Chhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDV-KTELLSHST----------DRDVVDKY-DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v-~T~~~~~~~----------~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
++++++++.|++++||+||+|+||.+ .|++..... ..+....+ ......++..|+|++.+++|++++.
T Consensus 162 ~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~ 241 (259)
T PRK12384 162 VGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASPK 241 (259)
T ss_pred HHHHHHHHHHHHHcCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHHcCcc
Confidence 99999999999999999999999975 677643211 01111111 1112345789999999999987654
Q ss_pred CCccccceE
Q psy4557 942 SHSAVNSIL 950 (958)
Q Consensus 942 ~~~~i~~~~ 950 (958)
. .+++|..
T Consensus 242 ~-~~~~G~~ 249 (259)
T PRK12384 242 A-SYCTGQS 249 (259)
T ss_pred c-ccccCce
Confidence 3 4555543
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=267.23 Aligned_cols=226 Identities=27% Similarity=0.406 Sum_probs=192.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++|+++||||++|||.++|++|+++|++|+++.+ +.+.++++.+++...+.++.++.+|+++++++.++++++.+.++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG 83 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 67999999999999999999999999999987654 45677777777766666788999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||......+.+.+.+.|+.++++|+.|++.+++.++|.|.+. ..|+||++||..+..+.+++..|++||+|
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a 162 (247)
T PRK12935 84 KVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEA-EEGRIISISSIIGQAGGFGQTNYSAAKAG 162 (247)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcchhhcCCCCCCcchHHHHHH
Confidence 99999999999776667788899999999999999999999999999743 45899999999998888899999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
+++++++++.++.+.||+++.|+||+++|++.......................|+|+++++++++..
T Consensus 163 ~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~edva~~~~~~~~~ 230 (247)
T PRK12935 163 MLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEVPEEVRQKIVAKIPKKRFGQADEIAKGVVYLCRD 230 (247)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhccHHHHHHHHHhCCCCCCcCHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999986543211111111111223468999999999997754
|
|
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=253.92 Aligned_cols=185 Identities=29% Similarity=0.399 Sum_probs=170.5
Q ss_pred CCCEEEEEcCC-chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH-HcC
Q psy4557 715 ANKVIFVTGSS-SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA-ELG 792 (958)
Q Consensus 715 ~~k~~lITGas-~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~-~~g 792 (958)
+.|+++|||+| ||||.++|++|+++|+.|+.++|+.+.+.++.... .+..+++|++++++|..+..++.+ .+|
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~-----gl~~~kLDV~~~~~V~~v~~evr~~~~G 80 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF-----GLKPYKLDVSKPEEVVTVSGEVRANPDG 80 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh-----CCeeEEeccCChHHHHHHHHHHhhCCCC
Confidence 67889999865 89999999999999999999999999888876432 377899999999999999999988 889
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|.|+||||..-..+..+.+.+..++.|++|++|++.++|++...+. +.+|.|||++|.++..|+|..+.|++||+|
T Consensus 81 kld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~li--kaKGtIVnvgSl~~~vpfpf~~iYsAsKAA 158 (289)
T KOG1209|consen 81 KLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLI--KAKGTIVNVGSLAGVVPFPFGSIYSASKAA 158 (289)
T ss_pred ceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHH--HccceEEEecceeEEeccchhhhhhHHHHH
Confidence 999999999999888889999999999999999999999999996554 456999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSH 906 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~ 906 (958)
++++++.|+.|++++||+|..+.||-|.|++...
T Consensus 159 ihay~~tLrlEl~PFgv~Vin~itGGv~T~Ia~k 192 (289)
T KOG1209|consen 159 IHAYARTLRLELKPFGVRVINAITGGVATDIADK 192 (289)
T ss_pred HHHhhhhcEEeeeccccEEEEecccceecccccC
Confidence 9999999999999999999999999999998654
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=265.27 Aligned_cols=224 Identities=25% Similarity=0.359 Sum_probs=181.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++|+++||||++|||+++|++|+++|++|++++| +.+.++++.+++ ....+.+|+++.+++.++++ .+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-----~~~~~~~D~~~~~~~~~~~~----~~ 73 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-----GATAVQTDSADRDAVIDVVR----KS 73 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-----CCeEEecCCCCHHHHHHHHH----Hh
Confidence 478999999999999999999999999999998876 455566554433 14467899999988776664 46
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-CCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-RPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-~~~~~~~~Y~asK 870 (958)
+++|++|||||........+.+.++|++++++|+.|++.+++.+++.|. ..|+||++||..+. .+.++...|+++|
T Consensus 74 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~g~iv~isS~~~~~~~~~~~~~Y~~sK 150 (237)
T PRK12742 74 GALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMP---EGGRIIIIGSVNGDRMPVAGMAAYAASK 150 (237)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHh---cCCeEEEEeccccccCCCCCCcchHHhH
Confidence 8999999999987666677888999999999999999999999999985 24899999999884 5778899999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
+++++++++++.+++++||+||+|+||+++|+|..... + ..+.. ......++.+|+|++..+.|+++ +...+++|.
T Consensus 151 aa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~-~-~~~~~~~~~~~~~~~~p~~~a~~~~~l~s-~~~~~~~G~ 227 (237)
T PRK12742 151 SALQGMARGLARDFGPRGITINVVQPGPIDTDANPANG-P-MKDMMHSFMAIKRHGRPEEVAGMVAWLAG-PEASFVTGA 227 (237)
T ss_pred HHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcccccc-H-HHHHHHhcCCCCCCCCHHHHHHHHHHHcC-cccCcccCC
Confidence 99999999999999999999999999999999864321 1 11111 11123457899999999999765 455667766
Q ss_pred Ee
Q psy4557 950 LI 951 (958)
Q Consensus 950 ~i 951 (958)
.+
T Consensus 228 ~~ 229 (237)
T PRK12742 228 MH 229 (237)
T ss_pred EE
Confidence 55
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-29 Score=271.21 Aligned_cols=224 Identities=30% Similarity=0.442 Sum_probs=190.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.+|+++||||++|||+++|++|+++|++|++++|+.++++.+.+. .+.++..+.+|+++++++.++++.+.+.++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~ 79 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL---HPDRALARLLDVTDFDAIDAVVADAEATFGPI 79 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh---cCCCeeEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 578999999999999999999999999999999998877766543 23457788999999999999999999999999
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
|++|||||.....++.+.+.++|++++++|+.|++.+++.++|+|.+ ++.|+||++||.++..+.+++..|+++|++++
T Consensus 80 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-~~~~~iv~iSS~~~~~~~~~~~~Y~~sK~a~~ 158 (277)
T PRK06180 80 DVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRA-RRRGHIVNITSMGGLITMPGIGYYCGSKFALE 158 (277)
T ss_pred CEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc-cCCCEEEEEecccccCCCCCcchhHHHHHHHH
Confidence 99999999987777888899999999999999999999999999974 34589999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC------hhh---hhhh----ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD------RDV---VDKY----DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~------~~~---~~~~----~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+++++++.|+++.|++|++|+||++.|++...... .+. .... ......+..+|+++|+++++++..+
T Consensus 159 ~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~l~~~ 238 (277)
T PRK06180 159 GISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAREAKSGKQPGDPAKAAQAILAAVESD 238 (277)
T ss_pred HHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999997542110 100 0000 0112334679999999999988765
Q ss_pred C
Q psy4557 942 S 942 (958)
Q Consensus 942 ~ 942 (958)
.
T Consensus 239 ~ 239 (277)
T PRK06180 239 E 239 (277)
T ss_pred C
Confidence 3
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=265.82 Aligned_cols=230 Identities=18% Similarity=0.305 Sum_probs=195.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC-CcEEEEEecCCC--HHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP-GSIIVKKLDVTI--ENDVKKVVREVLA 789 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dvs~--~~~v~~~~~~~~~ 789 (958)
.|++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+ .....+++|+++ .+++.++++++.+
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~ 82 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE 82 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999998888887775433 356678899975 5688999999998
Q ss_pred Hc-CCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhh
Q psy4557 790 EL-GHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 790 ~~-g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
.+ +++|++|||||... ..++.+.+.++|++++++|+.|++.+++.++|.|.+ .+.|+||++||..+..+.++...|+
T Consensus 83 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-~~~~~iv~~ss~~~~~~~~~~~~Y~ 161 (239)
T PRK08703 83 ATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQ-SPDASVIFVGESHGETPKAYWGGFG 161 (239)
T ss_pred HhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHh-CCCCEEEEEeccccccCCCCccchH
Confidence 88 89999999999853 356778899999999999999999999999999874 3468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCC-CcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 868 GTKYFIEGISGALRQEVSDR-NIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~-gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
+||+|+++|+++++.|+.++ +|+|++|+||+|+|++......... .....++++++..++|+++ +.+..+
T Consensus 162 ~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~ 232 (239)
T PRK08703 162 ASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHPGEA--------KSERKSYGDVLPAFVWWAS-AESKGR 232 (239)
T ss_pred HhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccCCCCC--------ccccCCHHHHHHHHHHHhC-ccccCc
Confidence 99999999999999999887 6999999999999998543211110 0124689999999999765 667778
Q ss_pred cceEec
Q psy4557 947 NSILIE 952 (958)
Q Consensus 947 ~~~~i~ 952 (958)
+|..|.
T Consensus 233 ~g~~~~ 238 (239)
T PRK08703 233 SGEIVY 238 (239)
T ss_pred CCeEee
Confidence 887663
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=268.12 Aligned_cols=228 Identities=23% Similarity=0.378 Sum_probs=192.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.++++|+++||||++|||+++|++|+++|++|++++|+. +...+..+..+++|++++++++++++++.+.+
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LTQEDYPFATFVLDVSDAAAVAQVCQRLLAET 74 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hhhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 558899999999999999999999999999999999985 12234567889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|++|||||.....++.+.+.++|++++++|+.+++.+++.++|.|.+ ++.|+||++||..+..+.++.+.|++||+
T Consensus 75 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~~ss~~~~~~~~~~~~Y~~sK~ 153 (252)
T PRK08220 75 GPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRR-QRSGAIVTVGSNAAHVPRIGMAAYGASKA 153 (252)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-CCCCEEEEECCchhccCCCCCchhHHHHH
Confidence 99999999999987777888899999999999999999999999999974 44689999999999988899999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh---------hhhh-ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV---------VDKY-DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~---------~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
++.+|+++++.|++++||+||+|+||++.|++......... ...+ ......++.+|+|+|++++|++. +
T Consensus 154 a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~-~ 232 (252)
T PRK08220 154 ALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLGIPLGKIARPQEIANAVLFLAS-D 232 (252)
T ss_pred HHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhcCCCcccCCHHHHHHHHHHHhc-c
Confidence 99999999999999999999999999999998543211000 0011 11123467899999999999765 4
Q ss_pred CCccccceE
Q psy4557 942 SHSAVNSIL 950 (958)
Q Consensus 942 ~~~~i~~~~ 950 (958)
...++++..
T Consensus 233 ~~~~~~g~~ 241 (252)
T PRK08220 233 LASHITLQD 241 (252)
T ss_pred hhcCccCcE
Confidence 455666643
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=273.16 Aligned_cols=230 Identities=24% Similarity=0.349 Sum_probs=194.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...+.++.++.+|++|.++++++++.+.+.+|
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999998888888887766556788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC-----cEEEEecCccCcCCCCCChhhh
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRP-----GHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~-----g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
++|+||||||.....++.+.+.++|++++++|+.|++.+++.++|.|++...+ |+||++||.++..+.++.+.|+
T Consensus 83 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~ 162 (287)
T PRK06194 83 AVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPAMGIYN 162 (287)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCCcchH
Confidence 99999999999877777888999999999999999999999999999865443 7999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCC--CCcEEEEEECCcccCCCCCCCCChh-hh-------hhh-------ccccCCCCCCHHHH
Q psy4557 868 GTKYFIEGISGALRQEVSD--RNIKVTCIQAGDVKTELLSHSTDRD-VV-------DKY-------DISKAVPVLTTKEI 930 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~--~gIrv~~v~PG~v~T~~~~~~~~~~-~~-------~~~-------~~~~~~~~~~p~~i 930 (958)
+||+++++|+++++.|++. .+||+++|+||+|.|++........ .. ..+ .........+++|+
T Consensus 163 ~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv 242 (287)
T PRK06194 163 VSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQSERNRPADLANTAPPTRSQLIAQAMSQKAVGSGKVTAEEV 242 (287)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccccccccCchhcccCccccchhhHHHHHHHhhhhccCCCHHHH
Confidence 9999999999999999874 5799999999999999865321100 00 000 00001123699999
Q ss_pred HHHHHHHhcCCC
Q psy4557 931 SQSIIFALLQPS 942 (958)
Q Consensus 931 a~~i~~~l~~~~ 942 (958)
|+.++..+....
T Consensus 243 a~~i~~~~~~~~ 254 (287)
T PRK06194 243 AQLVFDAIRAGR 254 (287)
T ss_pred HHHHHHHHHcCC
Confidence 999999775443
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=266.00 Aligned_cols=234 Identities=24% Similarity=0.362 Sum_probs=194.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|+++||||++|||+++|++|+++|++|++++|+.+.++++.+++ +.++..+++|+++.+++.++++.+.+.++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL---GESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999987777666554 34677889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....++.+.+.++|++++++|+.|++.++++++|+|. ..+++|+++|.++..+.+....|+++|++
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~~~~i~~~S~~~~~~~~~~~~Y~~sK~a 156 (249)
T PRK06500 80 RLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLA---NPASIVLNGSINAHIGMPNSSVYAASKAA 156 (249)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHh---cCCEEEEEechHhccCCCCccHHHHHHHH
Confidence 999999999987766777889999999999999999999999999985 24789999999999899999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC--C---hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST--D---RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~--~---~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
+++|+++++.|+.++||+|++|+||.++|++..... . ....... ......+..+|+++|++++|+++.+. .++
T Consensus 157 ~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~-~~~ 235 (249)
T PRK06500 157 LLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLGRFGTPEEIAKAVLYLASDES-AFI 235 (249)
T ss_pred HHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccc-cCc
Confidence 999999999999999999999999999999754311 1 1111111 11122346799999999999776433 455
Q ss_pred cc--eEecC
Q psy4557 947 NS--ILIEP 953 (958)
Q Consensus 947 ~~--~~i~p 953 (958)
++ +.|+.
T Consensus 236 ~g~~i~~~g 244 (249)
T PRK06500 236 VGSEIIVDG 244 (249)
T ss_pred cCCeEEECC
Confidence 55 44443
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=265.94 Aligned_cols=235 Identities=29% Similarity=0.399 Sum_probs=198.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+.+.. +.++.++.+|+++.++++++++++.+.++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 36899999999999999999999999999999999999888888777654 45688899999999999999999999999
Q ss_pred CccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 793 HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 793 ~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
++|++|||||... ..++.+.+.++|++++++|+.|++.+++.+++.|.+ +..++||++||..+..+.++...|+.+|+
T Consensus 81 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~~sS~~~~~~~~~~~~y~~sk~ 159 (251)
T PRK07231 81 SVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRG-EGGGAIVNVASTAGLRPRPGLGWYNASKG 159 (251)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcChhhcCCCCCchHHHHHHH
Confidence 9999999999854 345778899999999999999999999999999974 44689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC---hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD---RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~---~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
++..+++.++.+++++||+|++|+||++.|++...... +.....+ ......+..+|+|+|.++++++..+. ..++
T Consensus 160 ~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~-~~~~ 238 (251)
T PRK07231 160 AVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATIPLGRLGTPEDIANAALFLASDEA-SWIT 238 (251)
T ss_pred HHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCccc-cCCC
Confidence 99999999999999999999999999999998654321 1111111 11123456799999999999775443 4555
Q ss_pred ceE
Q psy4557 948 SIL 950 (958)
Q Consensus 948 ~~~ 950 (958)
|..
T Consensus 239 g~~ 241 (251)
T PRK07231 239 GVT 241 (251)
T ss_pred CCe
Confidence 553
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-29 Score=265.50 Aligned_cols=232 Identities=27% Similarity=0.416 Sum_probs=195.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|+.|++.+|+.++++++...+ +.++.++.+|+++.++++++++++.+.++
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL---GERVKIFPANLSDRDEVKALGQKAEADLE 79 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999999999999988888776554 34577889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....++.+.+.++|++++++|+.|++++++++.+.|.++ ..|+||++||.++..+.++...|+++|+|
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~~~Y~~sk~a 158 (245)
T PRK12936 80 GVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRR-RYGRIINITSVVGVTGNPGQANYCASKAG 158 (245)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCEEEEECCHHhCcCCCCCcchHHHHHH
Confidence 99999999999776667788889999999999999999999999988643 45899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+.+|+++++.++.+.||+|++|+||+++|++...... ...... ......+..+|++++..+.+++.. ...+++|..
T Consensus 159 ~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ia~~~~~l~~~-~~~~~~G~~ 235 (245)
T PRK12936 159 MIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLND-KQKEAIMGAIPMKRMGTGAEVASAVAYLASS-EAAYVTGQT 235 (245)
T ss_pred HHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccCh-HHHHHHhcCCCCCCCcCHHHHHHHHHHHcCc-cccCcCCCE
Confidence 9999999999999999999999999999998654321 111111 111233567899999999997754 344566643
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=267.47 Aligned_cols=232 Identities=22% Similarity=0.300 Sum_probs=189.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-P-GSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~-~-~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++||+++||||++|||+++|+.|+++|++|++++|+.++++++.+++... + ..+.++.+|+++++++.++++++.+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999888888777432 2 235567999999999999999999999
Q ss_pred CCccEEEEccccCC---CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC-------
Q psy4557 792 GHIDILVNNAGVMY---FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA------- 861 (958)
Q Consensus 792 g~iDilInnAG~~~---~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~------- 861 (958)
+++|++|||||... ...+.+.+.++|+.++++|+.+++.++++++|.|.+ ++.|+||++||.++..+..
T Consensus 82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~~sS~~~~~~~~~~~~~~~ 160 (256)
T PRK09186 82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKK-QGGGNLVNISSIYGVVAPKFEIYEGT 160 (256)
T ss_pred CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHh-cCCceEEEEechhhhccccchhcccc
Confidence 99999999998643 346778899999999999999999999999999974 3458999999988754311
Q ss_pred ---CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHH
Q psy4557 862 ---GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 862 ---~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~ 937 (958)
....|++||+++++|+++++.|+.++||+||+|+||.+.|+... .....+. .....+..+|+|+|+.++++
T Consensus 161 ~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dva~~~~~l 235 (256)
T PRK09186 161 SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPE-----AFLNAYKKCCNGKGMLDPDDICGTLVFL 235 (256)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCH-----HHHHHHHhcCCccCCCCHHHhhhhHhhe
Confidence 22469999999999999999999999999999999999876421 1111111 11234578999999999997
Q ss_pred hcCCCCccccceEec
Q psy4557 938 LLQPSHSAVNSILIE 952 (958)
Q Consensus 938 l~~~~~~~i~~~~i~ 952 (958)
++++ ..++++..+.
T Consensus 236 ~~~~-~~~~~g~~~~ 249 (256)
T PRK09186 236 LSDQ-SKYITGQNII 249 (256)
T ss_pred eccc-cccccCceEE
Confidence 7644 4566665543
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=267.21 Aligned_cols=231 Identities=24% Similarity=0.306 Sum_probs=189.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+.++||+++||||++|||.++|++|+++|++|++++|+.+.+++..+++. ..++++|++++++++++++++.+.+
T Consensus 3 ~~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 3 QRLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG-----GLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC-----CcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 44789999999999999999999999999999999999887777665552 1467899999999999999999999
Q ss_pred CCccEEEEccccCCC--ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC-CCChhhhH
Q psy4557 792 GHIDILVNNAGVMYF--TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-AGLAVYTG 868 (958)
Q Consensus 792 g~iDilInnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-~~~~~Y~a 868 (958)
+++|++|||||.... .++.+.+.+.|++++++|+.|++++++.++|.|.+ ++.|+||++||..+..+. ++...|++
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-~~~g~iv~~sS~~~~~g~~~~~~~Y~~ 156 (255)
T PRK06057 78 GSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVR-QGKGSIINTASFVAVMGSATSQISYTA 156 (255)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHH-hCCcEEEEEcchhhccCCCCCCcchHH
Confidence 999999999998642 35667889999999999999999999999999974 346899999998887765 47788999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhhh-hhhccccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDVV-DKYDISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~~-~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
+|+|+.+++++++.++.++||+|++|+||+++|++...... .... .........++.+|+++++++.+++... ..+
T Consensus 157 sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~~~ 235 (255)
T PRK06057 157 SKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRLVHVPMGRFAEPEEIAAAVAFLASDD-ASF 235 (255)
T ss_pred HHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcc-ccC
Confidence 99999999999999999999999999999999998654221 1111 1111112235789999999999976643 445
Q ss_pred ccce
Q psy4557 946 VNSI 949 (958)
Q Consensus 946 i~~~ 949 (958)
+++.
T Consensus 236 ~~g~ 239 (255)
T PRK06057 236 ITAS 239 (255)
T ss_pred ccCc
Confidence 5443
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=267.78 Aligned_cols=221 Identities=26% Similarity=0.451 Sum_probs=193.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+++|+++||||++|||+++|++|+++|++|++++|+.++++++..++ ..+.++.++.+|+++.++++++++.+.+ +++
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~-~~~ 80 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARARE-MGG 80 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHh-cCC
Confidence 57899999999999999999999999999999999999888888777 4456788899999999999999998876 899
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|++|||||.....++.+.+.+++++++++|+.|++.+++.++|+|.+ ++.|+||++||..+..+.++...|+++|+++
T Consensus 81 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~ 159 (263)
T PRK09072 81 INVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRA-QPSAMVVNVGSTFGSIGYPGYASYCASKFAL 159 (263)
T ss_pred CCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-cCCCEEEEecChhhCcCCCCccHHHHHHHHH
Confidence 999999999877677788899999999999999999999999999974 4458999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.+++++++.|+.+.||+|++|+||+++|++...... ........+..+|+++|+.+++++.+..
T Consensus 160 ~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~~~-----~~~~~~~~~~~~~~~va~~i~~~~~~~~ 223 (263)
T PRK09072 160 RGFSEALRRELADTGVRVLYLAPRATRTAMNSEAVQ-----ALNRALGNAMDDPEDVAAAVLQAIEKER 223 (263)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCcccccchhhhcc-----cccccccCCCCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999998543211 1111112246789999999999887653
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=266.21 Aligned_cols=240 Identities=21% Similarity=0.282 Sum_probs=201.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCe-EEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAK-VVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~-Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++|+++||||++|||+.+|++|+++|++ |++++|+.++++++.+++.+.+.++..+.+|+++++++.++++.+.+.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999 9999999888887777776556677788999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|++|||||......+.+.+.++|+.++++|+.|++.+++.+++.|.+....|+||++||.++..+.++...|+++|+
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~sK~ 162 (260)
T PRK06198 83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQPFLAAYCASKG 162 (260)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCCCcchhHHHHH
Confidence 99999999999877667778899999999999999999999999999975544689999999999888889999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC------Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST------DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~------~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
++++|+++++.|+...||+|++|+||++.|++..... ......... .....+..+++++++.+++++..+ ..
T Consensus 163 a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~~ 241 (260)
T PRK06198 163 ALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQPFGRLLDPDEVARAVAFLLSDE-SG 241 (260)
T ss_pred HHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccCCccCCcCHHHHHHHHHHHcChh-hC
Confidence 9999999999999999999999999999999742110 001111111 112234679999999999977644 55
Q ss_pred cccceEecC
Q psy4557 945 AVNSILIEP 953 (958)
Q Consensus 945 ~i~~~~i~p 953 (958)
.+++..|..
T Consensus 242 ~~~G~~~~~ 250 (260)
T PRK06198 242 LMTGSVIDF 250 (260)
T ss_pred CccCceEeE
Confidence 777766554
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=264.02 Aligned_cols=237 Identities=24% Similarity=0.324 Sum_probs=194.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEe-cChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~-r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.|+++||||++|||.++|+.|+++|++|+++. |+.++++++.+++...+.++..++||+++.++++++++++.+.++++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRL 81 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999999998764 66677777777776656678899999999999999999999999999
Q ss_pred cEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCcEEEEecCccCcCCCCC-ChhhhHHH
Q psy4557 795 DILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR--RPGHILNISSNAGVRPFAG-LAVYTGTK 870 (958)
Q Consensus 795 DilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~--~~g~IV~isS~~g~~~~~~-~~~Y~asK 870 (958)
|++|||||.... .++.+.+.++|+.++++|+.|++.+++.+++.|..++ +.|+||++||.++..+.+. +..|++||
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~~Y~~sK 161 (248)
T PRK06947 82 DALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGSK 161 (248)
T ss_pred CEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCCCCcccHhhH
Confidence 999999998643 4567888999999999999999999999999886432 2578999999998887664 57899999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
+++++|+++|+.++.++||+|++|+||+++|++......++...... .....+..+|+++|+.+++++.++ ..+++|.
T Consensus 162 ~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~e~va~~~~~l~~~~-~~~~~G~ 240 (248)
T PRK06947 162 GAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEADEVAETIVWLLSDA-ASYVTGA 240 (248)
T ss_pred HHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCCHHHHHHHhhcCCCCCCcCHHHHHHHHHHHcCcc-ccCcCCc
Confidence 99999999999999999999999999999999864321111111111 112234678999999999977654 4578877
Q ss_pred EecC
Q psy4557 950 LIEP 953 (958)
Q Consensus 950 ~i~p 953 (958)
.+..
T Consensus 241 ~~~~ 244 (248)
T PRK06947 241 LLDV 244 (248)
T ss_pred eEee
Confidence 7653
|
|
| >KOG1610|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=262.45 Aligned_cols=190 Identities=31% Similarity=0.450 Sum_probs=173.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
....+|.|+|||+.+|+|+.+|++|.++|.+|++.+-+++..+++..+.. .++...+++||+++++++++.+.+.+..
T Consensus 25 ~~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~--s~rl~t~~LDVT~~esi~~a~~~V~~~l 102 (322)
T KOG1610|consen 25 DSLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK--SPRLRTLQLDVTKPESVKEAAQWVKKHL 102 (322)
T ss_pred cccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc--CCcceeEeeccCCHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999988888888776653 5678888999999999999998888755
Q ss_pred C--CccEEEEccccC-CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 792 G--HIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 792 g--~iDilInnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
+ .+..||||||+. ..++.+-.+.++|++++++|++|++.++++++|.+++ .+|||||+||+.|+.+.|..+.||+
T Consensus 103 ~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~--arGRvVnvsS~~GR~~~p~~g~Y~~ 180 (322)
T KOG1610|consen 103 GEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRR--ARGRVVNVSSVLGRVALPALGPYCV 180 (322)
T ss_pred ccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHh--ccCeEEEecccccCccCcccccchh
Confidence 3 489999999976 4667778899999999999999999999999998874 3599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCC
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLS 905 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~ 905 (958)
||+|++.|+.+|++|+.++||+|.+|.||..+|++..
T Consensus 181 SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~ 217 (322)
T KOG1610|consen 181 SKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN 217 (322)
T ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC
Confidence 9999999999999999999999999999999999976
|
|
| >KOG1014|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=264.88 Aligned_cols=212 Identities=29% Similarity=0.397 Sum_probs=181.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.|++++||||+.|||++.|++||++|.+|++++|++++|+.+++++.+. +.++.++.+|.++.+.+.+-+.+..+. ..
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~-~~ 126 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAG-LD 126 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcC-Cc
Confidence 3499999999999999999999999999999999999999999999654 346788999999988744433333322 24
Q ss_pred ccEEEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 794 IDILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 794 iDilInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|-+||||+|+.. +..+.+.+.+.+++++++|+.++..+++.++|.|. .+++|.|||+||.+|..+.|.++.|++||+
T Consensus 127 VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~-~r~~G~IvnigS~ag~~p~p~~s~ysasK~ 205 (312)
T KOG1014|consen 127 VGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMV-ERKKGIIVNIGSFAGLIPTPLLSVYSASKA 205 (312)
T ss_pred eEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhh-cCCCceEEEeccccccccChhHHHHHHHHH
Confidence 668999999986 56688888889999999999999999999999998 566799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
.+..|+++|+.|+..+||.|.+|.|++|.|.|..... ...-..+|+..|+..+..+-
T Consensus 206 ~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~~~~~-----------~sl~~ps~~tfaksal~tiG 262 (312)
T KOG1014|consen 206 FVDFFSRCLQKEYESKGIFVQSVIPYLVATKMAKYRK-----------PSLFVPSPETFAKSALNTIG 262 (312)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEeehhheeccccccCC-----------CCCcCcCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999965421 11223467777777777554
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=268.70 Aligned_cols=224 Identities=30% Similarity=0.445 Sum_probs=191.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.+|+++||||++|||+++|++|+++|++|++++|+.+.++++.+.+ +..+..+++|++++++++++++.+.+.++++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY---GDRLLPLALDVTDRAAVFAAVETAVEHFGRL 78 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999999999999988877765543 3457788999999999999999999999999
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
|++|||||+....++.+.+.++|++++++|+.|++++++.++|.|.+. +.|+||++||.++..+.++...|++||+++.
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~vsS~~~~~~~~~~~~Y~~sKaa~~ 157 (275)
T PRK08263 79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQ-RSGHIIQISSIGGISAFPMSGIYHASKWALE 157 (275)
T ss_pred CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEcChhhcCCCCCccHHHHHHHHHH
Confidence 999999999887788889999999999999999999999999999743 4589999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC---C--hh--hh-hhh-ccccCCCC-CCHHHHHHHHHHHhcCCC
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHST---D--RD--VV-DKY-DISKAVPV-LTTKEISQSIIFALLQPS 942 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~---~--~~--~~-~~~-~~~~~~~~-~~p~~ia~~i~~~l~~~~ 942 (958)
+++++++.|+.++||+|++|+||++.|++..... . .. .. ... .......+ .+|+++|+.+++++..+.
T Consensus 158 ~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~~~~l~~~~~ 235 (275)
T PRK08263 158 GMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQWSERSVDGDPEAAAEALLKLVDAEN 235 (275)
T ss_pred HHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHHHHhccCCCCHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999874211 0 00 00 001 01122234 899999999999887653
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=264.05 Aligned_cols=235 Identities=26% Similarity=0.366 Sum_probs=198.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.+.+++..+++. .+.++..+.+|++|+++++++++++.+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999888887777665 345678899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||......+.+.+.++|++++++|+.|++.+++.+++.|.+ .+.|+||++||..+..+.++...|+++|++
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~ii~~sS~~~~~~~~~~~~Y~~sK~a 159 (252)
T PRK06138 81 RLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQR-QGGGSIVNTASQLALAGGRGRAAYVASKGA 159 (252)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHh-cCCeEEEEECChhhccCCCCccHHHHHHHH
Confidence 9999999999877777778899999999999999999999999999974 345899999999999888999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----Chhhhh-hhc-cccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----DRDVVD-KYD-ISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----~~~~~~-~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
+..++++++.|+..+||+|++|+||++.|++..... ...... ... ......+.+++++|+.+++++.++. ..+
T Consensus 160 ~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~-~~~ 238 (252)
T PRK06138 160 IASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRARHPMNRFGTAEEVAQAALFLASDES-SFA 238 (252)
T ss_pred HHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchh-cCc
Confidence 999999999999999999999999999999865321 111111 111 1111236789999999999776654 455
Q ss_pred cceE
Q psy4557 947 NSIL 950 (958)
Q Consensus 947 ~~~~ 950 (958)
+|..
T Consensus 239 ~g~~ 242 (252)
T PRK06138 239 TGTT 242 (252)
T ss_pred cCCE
Confidence 5543
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=263.64 Aligned_cols=236 Identities=25% Similarity=0.374 Sum_probs=200.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
|++|+++||||++|||+++|++|+++|++|++++|+.+..+++.+++...+.++.++.+|+++.++++++++.+.+.+++
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999999999998888888777666667888999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|++|||||.....++.+.+.++|++++++|+.|++++++.+++.|.+. +.++||++||.++..+.++...|+++|+|+
T Consensus 81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~iss~~~~~~~~~~~~Y~~sK~a~ 159 (250)
T TIGR03206 81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVER-GAGRIVNIASDAARVGSSGEAVYAACKGGL 159 (250)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEECchhhccCCCCCchHHHHHHHH
Confidence 9999999998766777788899999999999999999999999999743 458999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----C-hhhhhhhcc-ccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----D-RDVVDKYDI-SKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----~-~~~~~~~~~-~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
.+++++++.++.+.||+|++|+||+++|++..... . ......+.. ....+..+|+|+|+.+.+++.. ....++
T Consensus 160 ~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~ 238 (250)
T TIGR03206 160 VAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPLGRLGQPDDLPGAILFFSSD-DASFIT 238 (250)
T ss_pred HHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCccCCcCHHHHHHHHHHHcCc-ccCCCc
Confidence 99999999999999999999999999999754321 1 111111111 1223467899999999996654 455555
Q ss_pred ceEe
Q psy4557 948 SILI 951 (958)
Q Consensus 948 ~~~i 951 (958)
|..+
T Consensus 239 g~~~ 242 (250)
T TIGR03206 239 GQVL 242 (250)
T ss_pred CcEE
Confidence 5433
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=262.32 Aligned_cols=235 Identities=26% Similarity=0.351 Sum_probs=191.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEe-cChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~-r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
+|+++||||++|||.++|++|+++|++|+++. |+.+.++++.+.+...+.++.++.+|+++.+++.++++++.+.+|++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL 81 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 57999999999999999999999999998886 45566777766676555668889999999999999999999999999
Q ss_pred cEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCcEEEEecCccCcCCCCC-ChhhhHHH
Q psy4557 795 DILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR--RPGHILNISSNAGVRPFAG-LAVYTGTK 870 (958)
Q Consensus 795 DilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~--~~g~IV~isS~~g~~~~~~-~~~Y~asK 870 (958)
|++|||||.... ..+.+.+.++|++++++|+.|++.+++.+++.|.++. .+|+||++||.++..+.++ +..|+++|
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~Y~~sK 161 (248)
T PRK06123 82 DALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPGEYIDYAASK 161 (248)
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCCCccchHHHH
Confidence 999999998643 4567889999999999999999999999999996432 2589999999999888776 46799999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
+++++|+++++.++.++||+|++|+||++.|++......+....... .....+..+|+|+++++++++.. ...++++.
T Consensus 162 aa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~a~~~~~l~~~-~~~~~~g~ 240 (248)
T PRK06123 162 GAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGEPGRVDRVKAGIPMGRGGTAEEVARAILWLLSD-EASYTTGT 240 (248)
T ss_pred HHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCccCC
Confidence 99999999999999999999999999999999754322222111111 11222346899999999997664 33455554
Q ss_pred Ee
Q psy4557 950 LI 951 (958)
Q Consensus 950 ~i 951 (958)
.+
T Consensus 241 ~~ 242 (248)
T PRK06123 241 FI 242 (248)
T ss_pred EE
Confidence 43
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=260.20 Aligned_cols=232 Identities=28% Similarity=0.449 Sum_probs=202.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..+++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|+++.+++.++++++.+.+
T Consensus 3 ~~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 3 QSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred ccCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 34678999999999999999999999999999999999988888877776556678889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|++|||||......+.+.+.++|++++++|+.|++.+++.++|.|.+ +..++||++||..+..+.++...|+++|+
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~ 161 (239)
T PRK07666 83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIE-RQSGDIINISSTAGQKGAAVTSAYSASKF 161 (239)
T ss_pred CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-CCCcEEEEEcchhhccCCCCCcchHHHHH
Confidence 99999999999877667778899999999999999999999999999974 44689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
++.+++++++.|+.+.||++++|+||++.|++....... ......+.+++++|+.++.++..+....+++.-+
T Consensus 162 a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~~~~-------~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~ 234 (239)
T PRK07666 162 GVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDLGLT-------DGNPDKVMQPEDLAEFIVAQLKLNKRTFIKSAGL 234 (239)
T ss_pred HHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhcccc-------ccCCCCCCCHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 999999999999999999999999999999986432110 0112346789999999999998887666665543
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=263.51 Aligned_cols=232 Identities=20% Similarity=0.372 Sum_probs=193.4
Q ss_pred EEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhcCC--CcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAP--GSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~~~--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
++||||++|||+++|+.|+++|++|++++|+ .+.++++.+++.... .....+++|+++.++++++++++.+.++++|
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 81 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS 81 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence 7999999999999999999999999999998 777888877765432 2345688999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
++|||||......+.+.+.++|++++++|+.+++.+++.++|.|.+ ++.|+||++||.++..+.++...|+++|+++.+
T Consensus 82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~ii~~ss~~~~~~~~~~~~Y~~sK~a~~~ 160 (251)
T PRK07069 82 VLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRA-SQPASIVNISSVAAFKAEPDYTAYNASKAAVAS 160 (251)
T ss_pred EEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhh-cCCcEEEEecChhhccCCCCCchhHHHHHHHHH
Confidence 9999999987777888899999999999999999999999999974 346899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCC--cEEEEEECCcccCCCCCCCC----Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 876 ISGALRQEVSDRN--IKVTCIQAGDVKTELLSHST----DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 876 l~~~la~el~~~g--Irv~~v~PG~v~T~~~~~~~----~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
|+|+++.|+++++ |+|++|+||+++|++..... .+....... .....++.+|+|+|..+++++.. ...+++|
T Consensus 161 ~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g 239 (251)
T PRK07069 161 LTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVPLGRLGEPDDVAHAVLYLASD-ESRFVTG 239 (251)
T ss_pred HHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCCCCCCcCHHHHHHHHHHHcCc-cccCccC
Confidence 9999999998775 99999999999999864321 111111111 11223567899999999996554 4557777
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..|.
T Consensus 240 ~~i~ 243 (251)
T PRK07069 240 AELV 243 (251)
T ss_pred CEEE
Confidence 6653
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=268.44 Aligned_cols=219 Identities=31% Similarity=0.428 Sum_probs=186.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
++|+++||||+||||+++|++|+++|++|++++|+.++++. ...+.++++|++|+++++++++.+.+.+|++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~ 74 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP--------IPGVELLELDVTDDASVQAAVDEVIARAGRI 74 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc--------cCCCeeEEeecCCHHHHHHHHHHHHHhCCCC
Confidence 57899999999999999999999999999999999765432 1246788999999999999999999999999
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
|+||||||......+.+.+.++|++++++|+.|++.+++.++|.|.+ ++.|+||++||.++..+.|+.+.|++||++++
T Consensus 75 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~ 153 (270)
T PRK06179 75 DVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRA-QGSGRIINISSVLGFLPAPYMALYAASKHAVE 153 (270)
T ss_pred CEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCceEEEECCccccCCCCCccHHHHHHHHHH
Confidence 99999999987778888899999999999999999999999999974 45689999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh-hhhh----------hccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD-VVDK----------YDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~-~~~~----------~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+|+++++.|++++||+|++|+||++.|++........ .... .......+..+|+++|+.+++++..+.
T Consensus 154 ~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~~ 232 (270)
T PRK06179 154 GYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKAVAKAVKKADAPEVVADTVVKAALGPW 232 (270)
T ss_pred HHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999865432110 0000 000112345789999999999887654
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=261.26 Aligned_cols=233 Identities=25% Similarity=0.398 Sum_probs=194.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
++||+++||||++|||.++|+.|+++|++|++++|+.+++++..+++...+.++..+++|+++.++++++++.+.+.+++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999998888888877766667888999999999999999999998999
Q ss_pred ccEEEEccccCCCcc--------c-cCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 794 IDILVNNAGVMYFTL--------M-EKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 794 iDilInnAG~~~~~~--------~-~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
+|++|||||...... + .+.+.++|+.++++|+.|++++++.++|.|.+....|.||++||.. ..+.++.+
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~-~~~~~~~~ 161 (253)
T PRK08217 83 LNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIA-RAGNMGQT 161 (253)
T ss_pred CCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEcccc-ccCCCCCc
Confidence 999999999754322 1 5678899999999999999999999999997654568999999975 45778889
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
.|++||+|+++++++|+.++.++||++++|+||++.|++..... +.....+. ........+|+|+|..+.+++..
T Consensus 162 ~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--- 237 (253)
T PRK08217 162 NYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMK-PEALERLEKMIPVGRLGEPEEIAHTVRFIIEN--- 237 (253)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccC-HHHHHHHHhcCCcCCCcCHHHHHHHHHHHHcC---
Confidence 99999999999999999999999999999999999999865432 22222111 11223467999999999998753
Q ss_pred ccccceEe
Q psy4557 944 SAVNSILI 951 (958)
Q Consensus 944 ~~i~~~~i 951 (958)
..+++..+
T Consensus 238 ~~~~g~~~ 245 (253)
T PRK08217 238 DYVTGRVL 245 (253)
T ss_pred CCcCCcEE
Confidence 24555444
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=264.29 Aligned_cols=220 Identities=28% Similarity=0.383 Sum_probs=189.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH-cCCcc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE-LGHID 795 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~-~g~iD 795 (958)
|+++||||++|||+++|++|+++|++|++++|+.+.++++.+.+. +.++.++++|+++.+++.++++.+.+. ++++|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 789999999999999999999999999999999998888877664 456888999999999999999988776 79999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
+||||||......+.+.+.++|++++++|+.|++.+++++.++|.. ++.|+||++||.++..+.++...|++||+++++
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~isS~~~~~~~~~~~~Y~~sKaa~~~ 158 (260)
T PRK08267 80 VLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKA-TPGARVINTSSASAIYGQPGLAVYSATKFAVRG 158 (260)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-CCCCEEEEeCchhhCcCCCCchhhHHHHHHHHH
Confidence 9999999987777888899999999999999999999999999974 446899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
|+++++.++.+.||+|++|.||++.|+|............ ........+|+++|..+++++..+
T Consensus 159 ~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 159 LTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSNEVDAGS--TKRLGVRLTPEDVAEAVWAAVQHP 222 (260)
T ss_pred HHHHHHHHhcccCcEEEEEecCCcCCcccccccchhhhhh--HhhccCCCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999998654111111000 111123478999999999988544
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=260.72 Aligned_cols=232 Identities=26% Similarity=0.400 Sum_probs=191.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh-hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~-~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
|+++||||++|||+++|+.|+++|++|++++|+.+ ..++........+.++.++++|+++.+++.++++.+.+.++++|
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id 82 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVD 82 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 68999999999999999999999999999999853 23333333333345688899999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
++|||||......+.+.+.++|++++++|+.|++++++.++|.|.+ +..|+||++||..+..+.++.+.|+++|+|+++
T Consensus 83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~iss~~~~~~~~~~~~Y~~sK~a~~~ 161 (245)
T PRK12824 83 ILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCE-QGYGRIINISSVNGLKGQFGQTNYSAAKAGMIG 161 (245)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hCCeEEEEECChhhccCCCCChHHHHHHHHHHH
Confidence 9999999987777788899999999999999999999999999974 346899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhcc-ccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDI-SKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~-~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
|+++++.++++.||+|++|+||++.|++..... +.....+.. .......+++++++.+.+++..+ ...++|-.+
T Consensus 162 ~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~-~~~~~G~~~ 236 (245)
T PRK12824 162 FTKALASEGARYGITVNCIAPGYIATPMVEQMG-PEVLQSIVNQIPMKRLGTPEEIAAAVAFLVSEA-AGFITGETI 236 (245)
T ss_pred HHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC-HHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcc-ccCccCcEE
Confidence 999999999999999999999999999865432 221111111 12234678999999999976543 344555443
|
|
| >KOG1208|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-29 Score=271.37 Aligned_cols=233 Identities=25% Similarity=0.308 Sum_probs=192.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
..+.||+++||||++|||+++|++|+++|++|++.+|+.++.+++++.+... ..++.++++|+++.++|+++++++.+
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999988753 34577899999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----------
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR----------- 858 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~----------- 858 (958)
.++++|+||||||++.... ..+.|.++..|.||+.|+|.+++.++|.|+++.+ +||||+||..+..
T Consensus 111 ~~~~ldvLInNAGV~~~~~--~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~-~RIV~vsS~~~~~~~~~~~l~~~~ 187 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPPF--SLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP-SRIVNVSSILGGGKIDLKDLSGEK 187 (314)
T ss_pred cCCCccEEEeCcccccCCc--ccCccchhheehhhhHHHHHHHHHHHHHHhhCCC-CCEEEEcCccccCccchhhccchh
Confidence 9999999999999987654 5677899999999999999999999999985544 9999999988611
Q ss_pred -C-CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCC-CCCCCCChhhhhhhcccc-CCCCCCHHHHHHHH
Q psy4557 859 -P-FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTE-LLSHSTDRDVVDKYDISK-AVPVLTTKEISQSI 934 (958)
Q Consensus 859 -~-~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~-~~~~~~~~~~~~~~~~~~-~~~~~~p~~ia~~i 934 (958)
. +....+|+.||.++..+++.|++.+.+ ||.+++++||.|.|+ +.+ . ......+.... ....-++++.|...
T Consensus 188 ~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~-~V~~~~~hPG~v~t~~l~r-~--~~~~~~l~~~l~~~~~ks~~~ga~t~ 263 (314)
T KOG1208|consen 188 AKLYSSDAAYALSKLANVLLANELAKRLKK-GVTTYSVHPGVVKTTGLSR-V--NLLLRLLAKKLSWPLTKSPEQGAATT 263 (314)
T ss_pred ccCccchhHHHHhHHHHHHHHHHHHHHhhc-CceEEEECCCcccccceec-c--hHHHHHHHHHHHHHhccCHHHHhhhe
Confidence 0 223345999999999999999999988 999999999999999 544 1 11111111111 11124799999999
Q ss_pred HHHhcCCCCccccceEe
Q psy4557 935 IFALLQPSHSAVNSILI 951 (958)
Q Consensus 935 ~~~l~~~~~~~i~~~~i 951 (958)
+++..+|.-...+|...
T Consensus 264 ~~~a~~p~~~~~sg~y~ 280 (314)
T KOG1208|consen 264 CYAALSPELEGVSGKYF 280 (314)
T ss_pred ehhccCccccCcccccc
Confidence 99999996666666553
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=265.18 Aligned_cols=236 Identities=22% Similarity=0.352 Sum_probs=197.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++|+++||||++|||+++|+.|+++|++|++++|+.+++++..+++... ..++.++.+|++++++++++++++.+.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999988888777776543 246778899999999999999999999
Q ss_pred cCCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 791 LGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 791 ~g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
++++|++|||||... ..++.+.+.++|+.++++|+.+++.+++++++.|.+. +.|+||++||..+..+.++.+.|+++
T Consensus 84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~~sS~~~~~~~~~~~~Y~~s 162 (276)
T PRK05875 84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRG-GGGSFVGISSIAASNTHRWFGAYGVT 162 (276)
T ss_pred cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEechhhcCCCCCCcchHHH
Confidence 999999999999753 3456778899999999999999999999999999743 45899999999999888889999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
|+++++++++++.++...||+|++|+||+++|++...... ........ .....++..++|+|.+++|++..+. .+++
T Consensus 163 K~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~-~~~~ 241 (276)
T PRK05875 163 KSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRACTPLPRVGEVEDVANLAMFLLSDAA-SWIT 241 (276)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHcCCCCCCCcCHHHHHHHHHHHcCchh-cCcC
Confidence 9999999999999999999999999999999998653221 11111111 1122346789999999999876654 3445
Q ss_pred ceE
Q psy4557 948 SIL 950 (958)
Q Consensus 948 ~~~ 950 (958)
+..
T Consensus 242 g~~ 244 (276)
T PRK05875 242 GQV 244 (276)
T ss_pred CCE
Confidence 433
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=261.84 Aligned_cols=231 Identities=31% Similarity=0.440 Sum_probs=186.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh--HHHHHHHhhcCC-CcEEEEEecCCC-HHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR--LENLKTSLQNAP-GSIIVKKLDVTI-ENDVKKVVREVL 788 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~--l~~~~~~l~~~~-~~~~~~~~Dvs~-~~~v~~~~~~~~ 788 (958)
.+++|+++||||++|||+++|++|+++|++|++++|+.+. ++.+.+...... ......++|+++ .++++.+++.+.
T Consensus 2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~ 81 (251)
T COG1028 2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAE 81 (251)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998888654 444444443112 257778899998 999999999999
Q ss_pred HHcCCccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC-Chhh
Q psy4557 789 AELGHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG-LAVY 866 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~-~~~Y 866 (958)
+.+|++|++|||||+... .++.+.+.++|++++++|+.|++.+++.+.|.|. .+ +||++||.++. +.++ ++.|
T Consensus 82 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~-~~---~Iv~isS~~~~-~~~~~~~~Y 156 (251)
T COG1028 82 EEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMK-KQ---RIVNISSVAGL-GGPPGQAAY 156 (251)
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhh-hC---eEEEECCchhc-CCCCCcchH
Confidence 999999999999999877 4888999999999999999999999998778776 22 99999999999 8787 4999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh---hhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD---VVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~---~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
++||+|+.+|+++|+.|+.++||+|++|+||++.|++........ ...........+...|++++..+.++......
T Consensus 157 ~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (251)
T COG1028 157 AASKAALIGLTKALALELAPRGIRVNAVAPGYIDTPMTAALESAELEALKRLAARIPLGRLGTPEEVAAAVAFLASDEAA 236 (251)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCcchhhhhhhhhhHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcchh
Confidence 999999999999999999999999999999999999976532211 00000000222566889999999976544323
Q ss_pred ccccc
Q psy4557 944 SAVNS 948 (958)
Q Consensus 944 ~~i~~ 948 (958)
.++++
T Consensus 237 ~~~~g 241 (251)
T COG1028 237 SYITG 241 (251)
T ss_pred ccccC
Confidence 33333
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=262.96 Aligned_cols=237 Identities=25% Similarity=0.388 Sum_probs=199.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|+++||||++|||+++++.|+++|++|++++|+.++.+++.+.+.+.+.++.++++|+++.++++++++.+.+.++
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999888888888876666788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||......+.+.+.++|+.++++|+.|++.+++.+++.|.+..+.|+||++||..+..+.+....|+++|++
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~~~~~~y~~sk~a 163 (262)
T PRK13394 84 SVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHG 163 (262)
T ss_pred CCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCCCCCcccHHHHHH
Confidence 99999999999776677778899999999999999999999999999434556899999999999888889999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh----------hhhhh-hc-cccCCCCCCHHHHHHHHHHHhcC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR----------DVVDK-YD-ISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~----------~~~~~-~~-~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
+.+++|+++.++.+.||+|++|+||++.|++....... +.... +. ......+.+++|+++++++++..
T Consensus 164 ~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~ 243 (262)
T PRK13394 164 LLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGKTVDGVFTTVEDVAQTVLFLSSF 243 (262)
T ss_pred HHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999975322110 00000 00 11123578999999999998765
Q ss_pred CCCccccceE
Q psy4557 941 PSHSAVNSIL 950 (958)
Q Consensus 941 ~~~~~i~~~~ 950 (958)
+. ..+++..
T Consensus 244 ~~-~~~~g~~ 252 (262)
T PRK13394 244 PS-AALTGQS 252 (262)
T ss_pred cc-cCCcCCE
Confidence 53 3444443
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=265.79 Aligned_cols=218 Identities=25% Similarity=0.353 Sum_probs=184.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||++|||+++|++|+++|++|++++|+.++++++.. . ....+.+|+++.++++++++.+.+.++++|+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 75 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA----A--GFTAVQLDVNDGAALARLAEELEAEHGGLDV 75 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----C--CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 789999999999999999999999999999999877665432 1 2567889999999999999999999999999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHH
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l 876 (958)
+|||||.....++.+.+.++|++++++|+.|++.+++.++|.|.+ ..|+||++||.++..+.++...|++||+++++|
T Consensus 76 vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~~g~iv~isS~~~~~~~~~~~~Y~~sK~al~~~ 153 (274)
T PRK05693 76 LINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRR--SRGLVVNIGSVSGVLVTPFAGAYCASKAAVHAL 153 (274)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh--cCCEEEEECCccccCCCCCccHHHHHHHHHHHH
Confidence 999999887777788899999999999999999999999999963 348999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh------------hhhh---ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV------------VDKY---DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 877 ~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~------------~~~~---~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+++++.|++++||+|++|+||+|+|++......... .+.+ .........+|+++|+.++..+.++
T Consensus 154 ~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~ 233 (274)
T PRK05693 154 SDALRLELAPFGVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLREHIQARARASQDNPTPAAEFARQLLAAVQQS 233 (274)
T ss_pred HHHHHHHhhhhCeEEEEEecCccccccccccccchhhcCCCCCccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999998654211100 0000 0001123468999999999988755
Q ss_pred C
Q psy4557 942 S 942 (958)
Q Consensus 942 ~ 942 (958)
.
T Consensus 234 ~ 234 (274)
T PRK05693 234 P 234 (274)
T ss_pred C
Confidence 4
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-28 Score=257.36 Aligned_cols=233 Identities=27% Similarity=0.366 Sum_probs=195.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
|+++||||++|||+++|++|+++|++|++++| +.+.+++..+++...+.++.++.+|+++++++.++++++.+.++++|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID 80 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence 78999999999999999999999999999988 66666666666554456788899999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
++|||||......+.+.+.++|++++++|+.+++.+++.++|.|.+ .+.|+||++||..+..+.+++..|+++|+++..
T Consensus 81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~iss~~~~~~~~~~~~y~~sk~a~~~ 159 (242)
T TIGR01829 81 VLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRE-RGWGRIINISSVNGQKGQFGQTNYSAAKAGMIG 159 (242)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCcEEEEEcchhhcCCCCCcchhHHHHHHHHH
Confidence 9999999877666778899999999999999999999999999974 345899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
|++++++++.+.||++++|+||++.|++...... .....+. .....+..+|++++..+.+++.++ ..+++|..|+
T Consensus 160 ~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~~~~~G~~~~ 235 (242)
T TIGR01829 160 FTKALAQEGATKGVTVNTISPGYIATDMVMAMRE-DVLNSIVAQIPVGRLGRPEEIAAAVAFLASEE-AGYITGATLS 235 (242)
T ss_pred HHHHHHHHhhhhCeEEEEEeeCCCcCccccccch-HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCch-hcCccCCEEE
Confidence 9999999999999999999999999998653221 1111111 112335678999999999876554 3456666553
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=259.62 Aligned_cols=222 Identities=23% Similarity=0.372 Sum_probs=181.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.++||+++||||++|||+++|++|+++|++|++++|+.... ...++..+.+|++++ ++++.+.++
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~---------~~~~~~~~~~D~~~~------~~~~~~~~~ 66 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD---------LSGNFHFLQLDLSDD------LEPLFDWVP 66 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc---------cCCcEEEEECChHHH------HHHHHHhhC
Confidence 37899999999999999999999999999999999985421 124577889999886 556666789
Q ss_pred CccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 793 HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 793 ~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
++|++|||||... ..++.+.+.++|++++++|+.|++++++.++|.|.+ ++.|+||++||.++..+.++...|+++|+
T Consensus 67 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~ 145 (235)
T PRK06550 67 SVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLE-RKSGIIINMCSIASFVAGGGGAAYTASKH 145 (235)
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCcEEEEEcChhhccCCCCCcccHHHHH
Confidence 9999999999863 356678899999999999999999999999999974 34689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhh-hhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVV-DKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~-~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
++.+++++++.|++++||+||+|+||+++|++.......... ... ......++.+|+|+|+.++|+++ +...++++.
T Consensus 146 a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~s-~~~~~~~g~ 224 (235)
T PRK06550 146 ALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARETPIKRWAEPEEVAELTLFLAS-GKADYMQGT 224 (235)
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccCCcCCCCCHHHHHHHHHHHcC-hhhccCCCc
Confidence 999999999999999999999999999999986432211111 111 11223456899999999999775 444566666
Q ss_pred Ee
Q psy4557 950 LI 951 (958)
Q Consensus 950 ~i 951 (958)
.+
T Consensus 225 ~~ 226 (235)
T PRK06550 225 IV 226 (235)
T ss_pred EE
Confidence 55
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=292.21 Aligned_cols=238 Identities=24% Similarity=0.355 Sum_probs=197.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.++||+++||||++|||+++|++|+++|++|++++|+.+.++++.+.+... ...+..+++|+++.++++++++++.+.
T Consensus 411 ~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~ 490 (676)
T TIGR02632 411 TLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA 490 (676)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999998888877776532 235778899999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|++|+||||||+....++.+.+.++|+.++++|+.|++.+++.+++.|.++..+|+||++||..+..+.++...|++||
T Consensus 491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~~~~aY~aSK 570 (676)
T TIGR02632 491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGKNASAYSAAK 570 (676)
T ss_pred cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCCCCHHHHHHH
Confidence 99999999999987767788889999999999999999999999999997554468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccC--CCCCCCC-----------Chhhhhhhcc-ccCCCCCCHHHHHHHHHH
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKT--ELLSHST-----------DRDVVDKYDI-SKAVPVLTTKEISQSIIF 936 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T--~~~~~~~-----------~~~~~~~~~~-~~~~~~~~p~~ia~~i~~ 936 (958)
+|+++++++++.|+++.|||||+|+||.|.| .++.... ..+....+.. ....+..+|+|+|++++|
T Consensus 571 aA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~r~v~peDVA~av~~ 650 (676)
T TIGR02632 571 AAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEHYAKRTLLKRHIFPADIAEAVFF 650 (676)
T ss_pred HHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHHHHhcCCcCCCcCHHHHHHHHHH
Confidence 9999999999999999999999999999965 3432110 0000111111 122356899999999999
Q ss_pred HhcCCCCccccceEe
Q psy4557 937 ALLQPSHSAVNSILI 951 (958)
Q Consensus 937 ~l~~~~~~~i~~~~i 951 (958)
+++.. ...++|..+
T Consensus 651 L~s~~-~~~~TG~~i 664 (676)
T TIGR02632 651 LASSK-SEKTTGCII 664 (676)
T ss_pred HhCCc-ccCCcCcEE
Confidence 76644 345665554
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=257.39 Aligned_cols=225 Identities=25% Similarity=0.368 Sum_probs=189.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|+++||||++|||+++|++|+++|++|++++|+.+.++++.+++.+.+.....+.+|+++.++++++++++.+.++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 36889999999999999999999999999999999998888888777765555677889999999999999999999999
Q ss_pred CccEEEEccccCC---CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 793 HIDILVNNAGVMY---FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 793 ~iDilInnAG~~~---~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
++|+||||||+.. ..++.+.+.++|++++++|+.|++.++++++|.|.+. +.|+||++||.++.. +.+.|++|
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~---~~~~Y~~s 158 (250)
T PRK07774 83 GIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKR-GGGAIVNQSSTAAWL---YSNFYGLA 158 (250)
T ss_pred CCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHh-CCcEEEEEecccccC---CccccHHH
Confidence 9999999999864 3456677899999999999999999999999999743 468999999998754 45789999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
|+|+++++++++.++...||++++|+||.+.|++............. .........+|+++++.+++++..+
T Consensus 159 K~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~ 231 (250)
T PRK07774 159 KVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIPLSRMGTPEDLVGMCLFLLSDE 231 (250)
T ss_pred HHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChh
Confidence 99999999999999999999999999999999986543332221111 1112234678999999999977654
|
|
| >KOG1210|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=253.90 Aligned_cols=226 Identities=26% Similarity=0.323 Sum_probs=200.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC--CcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP--GSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
++++|||||+|||+++|.++..+|++|.+++|+.+++.+++++++-.. .++.+..+|+.+.+++..+++++....|.+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~ 113 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI 113 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence 689999999999999999999999999999999999999999885432 236688899999999999999999999999
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
|.+|||||....+.+.+.+++.++..+++|++|+++++++.++.|++....|+|+.+||.+|..++.|+++|+++|+|+.
T Consensus 114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~GysaYs~sK~alr 193 (331)
T KOG1210|consen 114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYGYSAYSPSKFALR 193 (331)
T ss_pred ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCcccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999986665689999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+|...|++|+.++||+|.++.|+.+.||.+.......+.............++|++|.+++.-+.+-.
T Consensus 194 gLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~tkP~~t~ii~g~ss~~~~e~~a~~~~~~~~rg~ 261 (331)
T KOG1210|consen 194 GLAEALRQELIKYGVHVTLYYPPDTLTPGFERENKTKPEETKIIEGGSSVIKCEEMAKAIVKGMKRGN 261 (331)
T ss_pred HHHHHHHHHHhhcceEEEEEcCCCCCCCccccccccCchheeeecCCCCCcCHHHHHHHHHhHHhhcC
Confidence 99999999999999999999999999998766543333222222333456899999999998765543
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=263.64 Aligned_cols=228 Identities=31% Similarity=0.445 Sum_probs=193.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++|+++||||++|||+++|+.|+++|++|++++|+.+.++++.+++... +.++.++.+|+++++++++ ++++.+.+
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 46899999999999999999999999999999999998888877665443 2468889999999999999 99999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|++|||||......+.+.+.++|++++++|+.|++.+++.++|.|.+ .+.|+||++||.++..+.++...|++||+
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~vsS~~~~~~~~~~~~Y~~sK~ 158 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRK-QKSGKIINISSISGRVGFPGLSPYVSSKY 158 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCCEEEEECcccccCCCCCCchhHHhHH
Confidence 99999999999987777778899999999999999999999999999974 34589999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC------h------hhhhhh-c--cccCCCCCCHHHHHHHHHH
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD------R------DVVDKY-D--ISKAVPVLTTKEISQSIIF 936 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~------~------~~~~~~-~--~~~~~~~~~p~~ia~~i~~ 936 (958)
++++|+++++.|+.++||+|++|+||+++|+++..... . ...... . .....+..+|+|+|+++++
T Consensus 159 ~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ 238 (280)
T PRK06914 159 ALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHINSGSDTFGNPIDVANLIVE 238 (280)
T ss_pred HHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHHhhhhhccCCHHHHHHHHHH
Confidence 99999999999999999999999999999997643210 0 000000 0 0112346899999999999
Q ss_pred HhcCCCC
Q psy4557 937 ALLQPSH 943 (958)
Q Consensus 937 ~l~~~~~ 943 (958)
++.++..
T Consensus 239 ~~~~~~~ 245 (280)
T PRK06914 239 IAESKRP 245 (280)
T ss_pred HHcCCCC
Confidence 9887654
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=254.77 Aligned_cols=232 Identities=33% Similarity=0.495 Sum_probs=206.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+.+|+++||||++|||++++++|+++|++|++++|+.++++++.+++... ..+..+++|+++.+++.++++++.+.+++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56899999999999999999999999999999999998888887777644 56888999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|++|||||.....++.+.+.++|++++++|+.|++.+++++++.|. +..|+||++||.++..+.++...|+++|+++
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~~~iv~~ss~~~~~~~~~~~~y~~sk~a~ 160 (237)
T PRK07326 83 LDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALK--RGGGYIINISSLAGTNFFAGGAAYNASKFGL 160 (237)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHH--HCCeEEEEECChhhccCCCCCchHHHHHHHH
Confidence 99999999987777778889999999999999999999999999884 3358999999999988888899999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecC
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p 953 (958)
.+++++++.|+...|+++++|+||++.|++........ .....+++++++.+++++..+...+...+.+.|
T Consensus 161 ~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~---------~~~~~~~~d~a~~~~~~l~~~~~~~~~~~~~~~ 231 (237)
T PRK07326 161 VGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTPSEK---------DAWKIQPEDIAQLVLDLLKMPPRTLPSKIEVRP 231 (237)
T ss_pred HHHHHHHHHHhcccCcEEEEEeeccccCcccccccchh---------hhccCCHHHHHHHHHHHHhCCccccccceEEec
Confidence 99999999999999999999999999998754321110 112368999999999999999999999999998
Q ss_pred CCCC
Q psy4557 954 PLAS 957 (958)
Q Consensus 954 ~~~~ 957 (958)
..+|
T Consensus 232 ~~~~ 235 (237)
T PRK07326 232 SRPP 235 (237)
T ss_pred CCCC
Confidence 8776
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=258.28 Aligned_cols=224 Identities=21% Similarity=0.279 Sum_probs=187.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
..+|+++||||++|||+++|++|+++|++|+++.++ .+.++++.+.+...+.++.++.+|++|.+++.++++++.+.+|
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 86 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG 86 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 367899999999999999999999999999887664 5667777777665566788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....++.+.+.++|++++++|+.|++.+++.+++.|.+ +..|+||+++|..+..+.|++..|++||+|
T Consensus 87 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~~~s~~~~~~~p~~~~Y~~sK~a 165 (258)
T PRK09134 87 PITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPA-DARGLVVNMIDQRVWNLNPDFLSYTLSKAA 165 (258)
T ss_pred CCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCceEEEECchhhcCCCCCchHHHHHHHH
Confidence 9999999999877667788899999999999999999999999999874 346899999998888888888899999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+++++++++.++.+. |+|++|+||++.|+.... ..............+..+|+|+|+++++++..+
T Consensus 166 ~~~~~~~la~~~~~~-i~v~~i~PG~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~ 231 (258)
T PRK09134 166 LWTATRTLAQALAPR-IRVNAIGPGPTLPSGRQS--PEDFARQHAATPLGRGSTPEEIAAAVRYLLDAP 231 (258)
T ss_pred HHHHHHHHHHHhcCC-cEEEEeecccccCCcccC--hHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCC
Confidence 999999999999876 999999999999875321 111111111112234578999999999988754
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=257.51 Aligned_cols=214 Identities=27% Similarity=0.374 Sum_probs=189.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+|+++||||++|||+++|++|+++|++|++++|+.++++++.+.+... +.++.++++|+++.+++.++++++.+.+++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 789999999999999999999999999999999999888887776543 456888999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC-ChhhhHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG-LAVYTGTKYF 872 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~-~~~Y~asKaa 872 (958)
+|++|||||+.....+.+.+.+.+++++++|+.|++.+++.++|.|.+. +.++||++||..+..+.++ ...|++||++
T Consensus 82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~~~~Y~~sK~a 160 (248)
T PRK08251 82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQ-GSGHLVLISSVSAVRGLPGVKAAYAASKAG 160 (248)
T ss_pred CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEeccccccCCCCCcccHHHHHHH
Confidence 9999999999877777778889999999999999999999999999743 4589999999999888875 6889999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+.+++++++.++...||+|++|+||+++|++...... ....+++++.|+.++..+...
T Consensus 161 ~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~-----------~~~~~~~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 161 VASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAKAKS-----------TPFMVDTETGVKALVKAIEKE 218 (248)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCcCcchhhhcccc-----------CCccCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998643211 123578999999999987654
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=259.63 Aligned_cols=228 Identities=29% Similarity=0.409 Sum_probs=197.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++..+.+|++++++++++++++.+.++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 67899999999999999999999999999999999999988888888766677888999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|++|||||......+.+.+.++|+.++++|+.|++.+++.+++.|.+ ++.++||++||..+..+.++.+.|+++|+++
T Consensus 82 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~iss~~~~~~~~~~~~y~~~k~a~ 160 (258)
T PRK12429 82 VDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKA-QGGGRIINMASVHGLVGSAGKAAYVSAKHGL 160 (258)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHh-cCCeEEEEEcchhhccCCCCcchhHHHHHHH
Confidence 999999999887777788899999999999999999999999999974 4468999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh---------h-hh-hhh-ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR---------D-VV-DKY-DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~---------~-~~-~~~-~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
.++++.++.|+.+.||+|++++||++.|++....... . .. ..+ .......+.+++|+|+.+++++.++
T Consensus 161 ~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~ 240 (258)
T PRK12429 161 IGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDVLLPLVPQKRFTTVEEIADYALFLASFA 240 (258)
T ss_pred HHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHHHhccCCccccCCHHHHHHHHHHHcCcc
Confidence 9999999999999999999999999999875421100 0 00 011 1112345789999999999987654
Q ss_pred C
Q psy4557 942 S 942 (958)
Q Consensus 942 ~ 942 (958)
.
T Consensus 241 ~ 241 (258)
T PRK12429 241 A 241 (258)
T ss_pred c
Confidence 3
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=257.74 Aligned_cols=232 Identities=27% Similarity=0.364 Sum_probs=193.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++++|+++||||++|||.++|++|+++|++|++. .|+.+++++..+.+...+.++.++.+|++|.+++.++++++.+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNEL 82 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999875 788888777777776555568889999999999999999999887
Q ss_pred ------CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh
Q psy4557 792 ------GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 792 ------g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~ 865 (958)
+++|++|||||......+.+.+.+.|++++++|+.|++++++.+++.|. ..|++|++||..+..+.++...
T Consensus 83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~~~~v~~sS~~~~~~~~~~~~ 159 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLR---AEGRVINISSAEVRLGFTGSIA 159 (254)
T ss_pred ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhh---cCCEEEEECCHHhcCCCCCCcc
Confidence 5799999999987766777889999999999999999999999999885 2379999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh--ccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY--DISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~--~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|++||+|+++++++++.++.++|++|++|+||++.|++............. ......+...++|+|+.+.+++..+ .
T Consensus 160 Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~ 238 (254)
T PRK12746 160 YGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRNFATNSSVFGRIGQVEDIADAVAFLASSD-S 238 (254)
T ss_pred hHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHHHHHHhcCCcCCCCCHHHHHHHHHHHcCcc-c
Confidence 999999999999999999999999999999999999986543221111111 1112235678999999999876644 3
Q ss_pred ccccc
Q psy4557 944 SAVNS 948 (958)
Q Consensus 944 ~~i~~ 948 (958)
..+++
T Consensus 239 ~~~~g 243 (254)
T PRK12746 239 RWVTG 243 (254)
T ss_pred CCcCC
Confidence 34444
|
|
| >KOG1199|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=239.13 Aligned_cols=224 Identities=26% Similarity=0.367 Sum_probs=191.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+.+|-+++||||.+|+|++.|++|+++|+.|++.+--.++-++..+++ ++++.+...|++++++++.++..++.+||
T Consensus 6 s~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel---g~~~vf~padvtsekdv~aala~ak~kfg 82 (260)
T KOG1199|consen 6 STKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL---GGKVVFTPADVTSEKDVRAALAKAKAKFG 82 (260)
T ss_pred hhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh---CCceEEeccccCcHHHHHHHHHHHHhhcc
Confidence 457889999999999999999999999999999998888888777766 56789999999999999999999999999
Q ss_pred CccEEEEccccCCC------ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-----CCCcEEEEecCccCcCCCC
Q psy4557 793 HIDILVNNAGVMYF------TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS-----RRPGHILNISSNAGVRPFA 861 (958)
Q Consensus 793 ~iDilInnAG~~~~------~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~-----~~~g~IV~isS~~g~~~~~ 861 (958)
++|.+|||||+..- ..-...+.|+|++++++|+.|+|.+++...-.|=+. ..+|.|||+.|++++.+..
T Consensus 83 rld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~ 162 (260)
T KOG1199|consen 83 RLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQT 162 (260)
T ss_pred ceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCcc
Confidence 99999999999632 112346889999999999999999999988888422 2358999999999999999
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc---cccCCCCCCHHHHHHHHHHHh
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD---ISKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~---~~~~~~~~~p~~ia~~i~~~l 938 (958)
+.++|++||+|+.+|+--++++++..|||++.|+||.++|||....+ +....+- .+...+...|.|.+..+-.++
T Consensus 163 gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpllsslp--ekv~~fla~~ipfpsrlg~p~eyahlvqaii 240 (260)
T KOG1199|consen 163 GQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLSSLP--EKVKSFLAQLIPFPSRLGHPHEYAHLVQAII 240 (260)
T ss_pred chhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhhhhh--HHHHHHHHHhCCCchhcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976543 2222221 233446789999998887776
Q ss_pred cCC
Q psy4557 939 LQP 941 (958)
Q Consensus 939 ~~~ 941 (958)
.+|
T Consensus 241 enp 243 (260)
T KOG1199|consen 241 ENP 243 (260)
T ss_pred hCc
Confidence 665
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=280.98 Aligned_cols=238 Identities=21% Similarity=0.303 Sum_probs=197.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC--hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR--IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~--~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.++||+++||||++|||+++|+.|+++|++|++++|. .+.++++.+++ + ...+.+|+++.++++++++.+.+.
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~---~--~~~~~~Dv~~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRV---G--GTALALDITAPDAPARIAEHLAER 281 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc---C--CeEEEEeCCCHHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999999884 33444444433 1 246789999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|++|++|||||+.....+.+.+.++|++++++|+.|++++++.+++.+.. +..|+||++||.++..+.++...|+++|
T Consensus 282 ~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~-~~~g~iv~~SS~~~~~g~~~~~~Y~asK 360 (450)
T PRK08261 282 HGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGAL-GDGGRIVGVSSISGIAGNRGQTNYAASK 360 (450)
T ss_pred CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhh-cCCCEEEEECChhhcCCCCCChHHHHHH
Confidence 999999999999987777888999999999999999999999999997653 3468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+++++|+++++.|+.++||+||+|+||+++|+|...................+...|+|+|.++.|++ ++...+++|..
T Consensus 361 aal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~l~~~~~p~dva~~~~~l~-s~~~~~itG~~ 439 (450)
T PRK08261 361 AGVIGLVQALAPLLAERGITINAVAPGFIETQMTAAIPFATREAGRRMNSLQQGGLPVDVAETIAWLA-SPASGGVTGNV 439 (450)
T ss_pred HHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhccchhHHHHHhhcCCcCCCCCHHHHHHHHHHHh-ChhhcCCCCCE
Confidence 99999999999999999999999999999999865432110000001112234578999999999965 57778899998
Q ss_pred ecCCCCC
Q psy4557 951 IEPPLAS 957 (958)
Q Consensus 951 i~p~~~~ 957 (958)
|....++
T Consensus 440 i~v~g~~ 446 (450)
T PRK08261 440 VRVCGQS 446 (450)
T ss_pred EEECCCc
Confidence 8766554
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=272.05 Aligned_cols=258 Identities=17% Similarity=0.172 Sum_probs=186.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||+||+++|++++ .+|+++.|...... ..+.+....++ ....+++.++.||+..
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~Di~d----- 80 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDNFSTGYQ--HNLDDVRTSVS-----EEQWSRFIFIQGDIRK----- 80 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCcch--hhhhhhhhccc-----cccCCceEEEEccCCC-----
Confidence 55789999999999999999999874 68999988543211 11111111110 0112578899999874
Q ss_pred CcHHHHHHHhcccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~ 473 (958)
.+.+..+.+++|+|||+||.++... .......+|+.||.||+++|++.++++|+|+||.+|||...+ +..|+
T Consensus 81 --~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~-- 156 (348)
T PRK15181 81 --FTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEE-- 156 (348)
T ss_pred --HHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCC--
Confidence 3566777788999999999765432 234567899999999999999988999999999999985432 22221
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---CCCC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---DIDW 549 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~~~~ 549 (958)
.+..+.+.|+.||.++|+++..+. +.|++++++||++|||+.+........++..+++.+..-+.++ +...
T Consensus 157 -----~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~ 231 (348)
T PRK15181 157 -----RIGRPLSPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGST 231 (348)
T ss_pred -----CCCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCc
Confidence 122456789999999999998754 4699999999999999976432222234555555544333222 2345
Q ss_pred cCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 550 YLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
..+|++||++|++++.+.... ...+.+||+.++.++++.|+++.+.+.
T Consensus 232 ~rd~i~v~D~a~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~ 281 (348)
T PRK15181 232 SRDFCYIENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDG 281 (348)
T ss_pred eEeeEEHHHHHHHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHH
Confidence 689999999999998766432 235689999999999999999998753
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-28 Score=267.15 Aligned_cols=235 Identities=20% Similarity=0.266 Sum_probs=185.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++... +.++.++.+|+++.++++++++++.+
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999988887776666532 34677889999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----------
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR----------- 858 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~----------- 858 (958)
.++++|+||||||+.... ...+.++|+.++++|+.|++.+++.++|.|.+. +.++||++||.++..
T Consensus 92 ~~~~iD~li~nAg~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~~~~~~~~~~~~ 168 (306)
T PRK06197 92 AYPRIDLLINNAGVMYTP--KQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSSGGHRIRAAIHFDDLQW 168 (306)
T ss_pred hCCCCCEEEECCccccCC--CccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECCHHHhccCCCCccccCc
Confidence 999999999999986432 346678899999999999999999999999743 458999999987543
Q ss_pred --CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEE--ECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHH
Q psy4557 859 --PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI--QAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSI 934 (958)
Q Consensus 859 --~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v--~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i 934 (958)
+.++...|++||+|+++|++.++.+++++|++|+++ +||+|+|+|....... ....+.........++++.+..+
T Consensus 169 ~~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~ 247 (306)
T PRK06197 169 ERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELARNLPRA-LRPVATVLAPLLAQSPEMGALPT 247 (306)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcccccCcHH-HHHHHHHHHhhhcCCHHHHHHHH
Confidence 234567899999999999999999999999887766 6999999997653221 11111111111234678888888
Q ss_pred HHHhcCCCCccccceEec
Q psy4557 935 IFALLQPSHSAVNSILIE 952 (958)
Q Consensus 935 ~~~l~~~~~~~i~~~~i~ 952 (958)
+++...+.. .+|..+.
T Consensus 248 ~~~~~~~~~--~~g~~~~ 263 (306)
T PRK06197 248 LRAATDPAV--RGGQYYG 263 (306)
T ss_pred HHHhcCCCc--CCCeEEc
Confidence 876665532 3455554
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=264.10 Aligned_cols=249 Identities=22% Similarity=0.256 Sum_probs=183.0
Q ss_pred EEeccccchHHHHHHHHhcCCC-CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcHH
Q psy4557 323 LLTGVTGYLGIHLLQKFLVDTK-CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQD 401 (958)
Q Consensus 323 llTGaTGflGs~ll~~LL~~~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~~ 401 (958)
|||||+||||+||+++||+++. .+|.+++|........ .+ . ..+...++.|||+. .+
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~-~~-------------~-~~~~~~~~~~Di~d-------~~ 58 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLK-DL-------------Q-KSGVKEYIQGDITD-------PE 58 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccch-hh-------------h-cccceeEEEecccc-------HH
Confidence 6999999999999999999875 5788888765432100 00 0 11233488999874 47
Q ss_pred HHHHHhcccCEEEEcccccCccc--ChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC--CCCc-ccccccC
Q psy4557 402 EYVSLSYEIDMIIHAAAFVNLIL--PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS--ENFQ-EDYTVAD 476 (958)
Q Consensus 402 ~~~~l~~~vd~IiH~AA~v~~~~--~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~--~~~~-e~~~~~~ 476 (958)
.+....+.+|+|||+||.+.... +.+.++++||.||+|||+.|.+.++++|+|+||.+|++... .++. .++.
T Consensus 59 ~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~--- 135 (280)
T PF01073_consen 59 SLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDED--- 135 (280)
T ss_pred HHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcC---
Confidence 78888899999999999987765 56678999999999999999999999999999999987521 1221 1111
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHhh------CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhC-CcC---C
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAGQ------MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLG-YAP---D 546 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~~------~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g-~~P---~ 546 (958)
.+.+....+.|+.||..||+++.++.. ..+..+++||..|||+..... ...+.+. .+.| ..+ +
T Consensus 136 ~~~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~------~~~~~~~-~~~g~~~~~~g~ 208 (280)
T PF01073_consen 136 TPYPSSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRL------VPRLVKM-VRSGLFLFQIGD 208 (280)
T ss_pred CcccccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccc------cchhhHH-HHhcccceeecC
Confidence 111223667999999999999999876 348999999999999975432 1222222 2333 222 2
Q ss_pred CCCcCCcccHHHHHHHHHHHhcC-------cCCCCceEEecCCCCCC-HHHHHH-HHHHcCCCccc
Q psy4557 547 IDWYLEFTPVDFLTKSLVQLTTN-------VNNANKIYNFINTNPIH-IKTLVS-VLNTYGYNIKT 603 (958)
Q Consensus 547 ~~~~~~~~pVD~va~aiv~l~~~-------~~~~~~v~h~~n~~~~~-~~~l~~-~l~~~g~~~~~ 603 (958)
.....++++|+.||.+++..... ....|+.|++.+..|+. +.|+.. .++..|++...
T Consensus 209 ~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 209 GNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred CCceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 23468999999999999876532 23478999999999999 888875 55677987665
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=256.71 Aligned_cols=234 Identities=18% Similarity=0.194 Sum_probs=191.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh-hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~-~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.|+++||||++|||.++|++|+++|++|++++|+. +.+++..+.+...+.++.++.+|+++++++.++++++.+.++++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI 81 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 58999999999999999999999999999999864 45555656665555578889999999999999999999999999
Q ss_pred cEEEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-----CcEEEEecCccCcCCCCCChhhh
Q psy4557 795 DILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRR-----PGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 795 DilInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~-----~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
|++|||||... ..++.+.+.+.|++++++|+.|++.+++.+++.|.+.+. .++||++||..+..+.++.+.|+
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~ 161 (256)
T PRK12745 82 DCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPNRGEYC 161 (256)
T ss_pred CEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCCCCcccH
Confidence 99999999853 345677889999999999999999999999999975443 46799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc--cccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD--ISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~--~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
+||+++++|+++++.|+.++||+|++|+||++.|++.....+ .....+. ......+..|+|+++++.+++. +...+
T Consensus 162 ~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~a~~i~~l~~-~~~~~ 239 (256)
T PRK12745 162 ISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTA-KYDALIAKGLVPMPRWGEPEDVARAVAALAS-GDLPY 239 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccch-hHHhhhhhcCCCcCCCcCHHHHHHHHHHHhC-Ccccc
Confidence 999999999999999999999999999999999998643211 1111111 1122346789999999998664 44445
Q ss_pred ccceEe
Q psy4557 946 VNSILI 951 (958)
Q Consensus 946 i~~~~i 951 (958)
++|..+
T Consensus 240 ~~G~~~ 245 (256)
T PRK12745 240 STGQAI 245 (256)
T ss_pred cCCCEE
Confidence 555443
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=255.12 Aligned_cols=231 Identities=22% Similarity=0.398 Sum_probs=196.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC-CcEEEEEecCC--CHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP-GSIIVKKLDVT--IENDVKKVVREVL 788 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dvs--~~~~v~~~~~~~~ 788 (958)
..+++|+++||||++|||.+++++|+++|++|++++|+.+.++++.+++.+.+ .++.++.+|++ ++++++++++.+.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999988888877776543 34666677775 7899999999999
Q ss_pred HHcCCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhh
Q psy4557 789 AELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
+.++++|+||||||... ..++.+.+.+.|++++++|+.|++.++++++|+|.+. +.++||++||..+..+.+++..|+
T Consensus 88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~-~~~~iv~~ss~~~~~~~~~~~~Y~ 166 (247)
T PRK08945 88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKS-PAASLVFTSSSVGRQGRANWGAYA 166 (247)
T ss_pred HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC-CCCEEEEEccHhhcCCCCCCcccH
Confidence 99999999999999864 3456778899999999999999999999999999744 468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
+||+++++|+++++.++...||++++|+||++.|++........ ......+|++++..++|+++ +...+++
T Consensus 167 ~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 237 (247)
T PRK08945 167 VSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAFPGE--------DPQKLKTPEDIMPLYLYLMG-DDSRRKN 237 (247)
T ss_pred HHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhcCcc--------cccCCCCHHHHHHHHHHHhC-ccccccC
Confidence 99999999999999999999999999999999999753221110 12246799999999999765 5455777
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..++
T Consensus 238 g~~~~ 242 (247)
T PRK08945 238 GQSFD 242 (247)
T ss_pred CeEEe
Confidence 77654
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=253.50 Aligned_cols=237 Identities=31% Similarity=0.474 Sum_probs=200.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+.+|+++||||++|||.++|+.|+++|++|+++ +|+.++++++.+.+...+.++.++.+|+++.++++++++.+.+.+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999 999888888877776555678889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|++|||||......+.+.+.++|++++++|+.|++.+++.++|.|.+ ++.+++|++||..+..+.+....|+++|+
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~~v~~sS~~~~~~~~~~~~y~~sK~ 160 (247)
T PRK05565 82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIK-RKSGVIVNISSIWGLIGASCEVLYSASKG 160 (247)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCcEEEEECCHhhccCCCCccHHHHHHH
Confidence 99999999999986666778899999999999999999999999999974 44689999999999999899999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
++..++++++.++...||++++|+||+++|++...................+..++++++..++++++... ..+++..+
T Consensus 161 a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~-~~~~g~~~ 239 (247)
T PRK05565 161 AVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEEDKEGLAEEIPLGRLGKPEEIAKVVLFLASDDA-SYITGQII 239 (247)
T ss_pred HHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCcc-CCccCcEE
Confidence 99999999999999999999999999999998654332111111111223356799999999999876543 45555544
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-27 Score=256.02 Aligned_cols=225 Identities=28% Similarity=0.451 Sum_probs=193.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+++||||++|||+++|+.|+++|++|++++|+.+..+++.+.+...+.++.++.+|+++.+++.++++++.+.++++|
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 57899999999999999999999999999999998888888777766666788899999999999999999999999999
Q ss_pred EEEEccccCCCccccCC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKY-KLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
++|||||......+.+. +.++|++.+++|+.|++.+++.++|.|.+ ..|+||++||..+..+.++...|+++|++++
T Consensus 81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~--~~~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~ 158 (263)
T PRK06181 81 ILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKA--SRGQIVVVSSLAGLTGVPTRSGYAASKHALH 158 (263)
T ss_pred EEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCEEEEEecccccCCCCCccHHHHHHHHHH
Confidence 99999998877777777 89999999999999999999999999863 3489999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhcc-ccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDI-SKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~-~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+++++++.++.++||++++|.||++.|++............... .....+++|+|+|+.+++++....
T Consensus 159 ~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~~~~~~~ 227 (263)
T PRK06181 159 GFFDSLRIELADDGVAVTVVCPGFVATDIRKRALDGDGKPLGKSPMQESKIMSAEECAEAILPAIARRK 227 (263)
T ss_pred HHHHHHHHHhhhcCceEEEEecCccccCcchhhccccccccccccccccCCCCHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999998653211100000000 011257899999999999886543
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=264.25 Aligned_cols=240 Identities=17% Similarity=0.182 Sum_probs=188.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|+++.++++++++++.+.++
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 45789999999999999999999999999999999999988888877754445678889999999999999999888888
Q ss_pred CccEEEEccccCCCc-cccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEecCccCcC------------
Q psy4557 793 HIDILVNNAGVMYFT-LMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRR-PGHILNISSNAGVR------------ 858 (958)
Q Consensus 793 ~iDilInnAG~~~~~-~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~-~g~IV~isS~~g~~------------ 858 (958)
++|+||||||+.... ...+.+.++|+.++++|+.|++.+++.++|.|.+.+. .|+||++||.++..
T Consensus 83 ~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~ 162 (322)
T PRK07453 83 PLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAP 162 (322)
T ss_pred CccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCc
Confidence 999999999986432 2346788999999999999999999999999985543 36999999976421
Q ss_pred -----------------------CCCCChhhhHHHHHHHHHHHHHHHHhC-CCCcEEEEEECCcc-cCCCCCCCCCh--h
Q psy4557 859 -----------------------PFAGLAVYTGTKYFIEGISGALRQEVS-DRNIKVTCIQAGDV-KTELLSHSTDR--D 911 (958)
Q Consensus 859 -----------------------~~~~~~~Y~asKaa~~~l~~~la~el~-~~gIrv~~v~PG~v-~T~~~~~~~~~--~ 911 (958)
++.....|+.||.++..+++.|++++. .+||+|++|+||+| .|++....... .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~~~~ 242 (322)
T PRK07453 163 ADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPLFRNTPPLFQK 242 (322)
T ss_pred cchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCcccccCCHHHHH
Confidence 112346799999999999999999995 47999999999999 59886543211 0
Q ss_pred hhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecC
Q psy4557 912 VVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953 (958)
Q Consensus 912 ~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p 953 (958)
....+.........++++.+..+++++..+.. ..+|..+.|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~y~~~ 283 (322)
T PRK07453 243 LFPWFQKNITGGYVSQELAGERVAQVVADPEF-AQSGVHWSW 283 (322)
T ss_pred HHHHHHHHHhhceecHHHHhhHHHHhhcCccc-CCCCceeec
Confidence 00000000111235778888888887776655 356776653
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=246.34 Aligned_cols=196 Identities=17% Similarity=0.223 Sum_probs=168.2
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
+++||||++|||+++|++|+++ ++|++++|+.+ .++||+++.+++++++++ ++++|++
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-----------------~~~~D~~~~~~~~~~~~~----~~~id~l 59 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-----------------DVQVDITDPASIRALFEK----VGKVDAV 59 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-----------------ceEecCCChHHHHHHHHh----cCCCCEE
Confidence 6999999999999999999999 99999999853 357999999999888764 5899999
Q ss_pred EEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHHH
Q psy4557 798 VNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGIS 877 (958)
Q Consensus 798 InnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l~ 877 (958)
|||||.....++.+.+.++|++.+++|+.|++++++.++|+|. +.|+|+++||..+..+.++...|++||+|+++|+
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~g~iv~iss~~~~~~~~~~~~Y~~sK~a~~~~~ 136 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLN---DGGSFTLTSGILSDEPIPGGASAATVNGALEGFV 136 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCeEEEEcccccCCCCCCchHHHHHHHHHHHHH
Confidence 9999987777788889999999999999999999999999996 2489999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 878 GALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 878 ~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
++|+.|+ ++||+||+|+||+++|+|.... .. .......+|+++|+.+++++.++ +++..++
T Consensus 137 ~~la~e~-~~gi~v~~i~Pg~v~t~~~~~~------~~---~~~~~~~~~~~~a~~~~~~~~~~----~~g~~~~ 197 (199)
T PRK07578 137 KAAALEL-PRGIRINVVSPTVLTESLEKYG------PF---FPGFEPVPAARVALAYVRSVEGA----QTGEVYK 197 (199)
T ss_pred HHHHHHc-cCCeEEEEEcCCcccCchhhhh------hc---CCCCCCCCHHHHHHHHHHHhccc----eeeEEec
Confidence 9999999 8999999999999999874211 00 11234578999999999987643 4554443
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=255.78 Aligned_cols=230 Identities=20% Similarity=0.363 Sum_probs=185.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh-hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC--
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH-- 793 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~-~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~-- 793 (958)
|+++||||++|||+++|++|+++|++|++++|+. +.++++.+ ..+.++.++++|++++++++++++++.+.++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAE---QYNSNLTFHSLDLQDVHELETNFNEILSSIQEDN 78 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHh---ccCCceEEEEecCCCHHHHHHHHHHHHHhcCccc
Confidence 6899999999999999999999999999999986 44444332 23456788999999999999999999887753
Q ss_pred cc--EEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 794 ID--ILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 794 iD--ilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
++ ++|+|||... ..++.+.+.++|++.+++|+.|++.+++.++|+|.+.+..|+||++||..+..+.++...|+++|
T Consensus 79 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK 158 (251)
T PRK06924 79 VSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPYFGWSAYCSSK 158 (251)
T ss_pred CCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCCCCcHHHhHHH
Confidence 22 8999999864 35677889999999999999999999999999997544568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC--CCCcEEEEEECCcccCCCCCCC---CChh--hhhhh-ccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 871 YFIEGISGALRQEVS--DRNIKVTCIQAGDVKTELLSHS---TDRD--VVDKY-DISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 871 aa~~~l~~~la~el~--~~gIrv~~v~PG~v~T~~~~~~---~~~~--~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+|+++|+++++.|++ +.||+|++|+||+++|++.... .... ....+ ......++.+|+++|+.+++++..+
T Consensus 159 aa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~- 237 (251)
T PRK06924 159 AGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITLKEEGKLLSPEYVAKALRNLLETE- 237 (251)
T ss_pred HHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHHHhhcCCcCCHHHHHHHHHHHHhcc-
Confidence 999999999999985 5689999999999999985421 0010 00111 1112335789999999999988764
Q ss_pred CccccceEe
Q psy4557 943 HSAVNSILI 951 (958)
Q Consensus 943 ~~~i~~~~i 951 (958)
.+++|..+
T Consensus 238 -~~~~G~~~ 245 (251)
T PRK06924 238 -DFPNGEVI 245 (251)
T ss_pred -cCCCCCEe
Confidence 35555544
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-27 Score=251.14 Aligned_cols=235 Identities=26% Similarity=0.445 Sum_probs=193.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec----ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR----RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r----~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+++|+++||||++|||+++|++|+++|++|++++| +.+..+++.+++...+.++.++.+|+++.++++++++++.+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999665 45556666666665566788899999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
.++++|++|||||......+.+.+.++|++++++|+.|++.+++.+.+.+.+.+..++||++||..+..+.++...|+++
T Consensus 84 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~s 163 (249)
T PRK12827 84 EFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNRGQVNYAAS 163 (249)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCCCCCchhHHH
Confidence 99999999999999877777888999999999999999999999999444334456899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|++++.++++++.++.+.||++++|+||+++|++.......... ..........+++++|+.+++++.. ....+++.
T Consensus 164 K~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~~~~--~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~ 240 (249)
T PRK12827 164 KAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPTEHL--LNPVPVQRLGEPDEVAALVAFLVSD-AASYVTGQ 240 (249)
T ss_pred HHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchHHHH--HhhCCCcCCcCHHHHHHHHHHHcCc-ccCCccCc
Confidence 99999999999999999999999999999999986543211110 1111122345899999999997754 34566665
Q ss_pred Ee
Q psy4557 950 LI 951 (958)
Q Consensus 950 ~i 951 (958)
.+
T Consensus 241 ~~ 242 (249)
T PRK12827 241 VI 242 (249)
T ss_pred EE
Confidence 44
|
|
| >KOG1611|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=235.32 Aligned_cols=209 Identities=26% Similarity=0.373 Sum_probs=169.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHc-CCeEEE-EecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH--
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTL-GAKVVA-VARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE-- 790 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~-Ga~Vi~-~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~-- 790 (958)
.-|.++||||++|||+.++++|.+. |-.+++ ++|+.++..+..+.......+++++++||++.+++.++++++.+-
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg 81 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVG 81 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcc
Confidence 4466999999999999999999975 666555 466688753333333334678999999999999999999999986
Q ss_pred cCCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC----------CcEEEEecCccCcCC
Q psy4557 791 LGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRR----------PGHILNISSNAGVRP 859 (958)
Q Consensus 791 ~g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~----------~g~IV~isS~~g~~~ 859 (958)
...+|+||||||+.. .....+.+.+.|.+.+++|..|+++++|.++|++++... ++.|||+||.++..+
T Consensus 82 ~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~ 161 (249)
T KOG1611|consen 82 SDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIG 161 (249)
T ss_pred cCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccC
Confidence 457999999999974 344556678899999999999999999999999975321 348999999887643
Q ss_pred ---CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHH
Q psy4557 860 ---FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIF 936 (958)
Q Consensus 860 ---~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~ 936 (958)
..++.+|..||+|++.|+|+++.|+++.+|-|..+|||||+|+|.... ..+++|+-+..++.
T Consensus 162 ~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg~~---------------a~ltveeSts~l~~ 226 (249)
T KOG1611|consen 162 GFRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGGKK---------------AALTVEESTSKLLA 226 (249)
T ss_pred CCCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCCCC---------------cccchhhhHHHHHH
Confidence 345788999999999999999999999999999999999999997632 23567777666665
Q ss_pred Hh
Q psy4557 937 AL 938 (958)
Q Consensus 937 ~l 938 (958)
-+
T Consensus 227 ~i 228 (249)
T KOG1611|consen 227 SI 228 (249)
T ss_pred HH
Confidence 33
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=256.90 Aligned_cols=223 Identities=30% Similarity=0.430 Sum_probs=188.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
.|+++||||++|||+++|++|+++|++|++++|+.+.++++.+.. +.++.++++|+++.+++.++++++.+.++++|
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---GDRLWVLQLDVTDSAAVRAVVDRAFAALGRID 78 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---cCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 478999999999999999999999999999999988877766543 23577889999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
+||||||.....+..+.+.++|++++++|+.|++.+++.++|+|. .++.|+||++||..+..+.|+.+.|++||+++++
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~-~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~ 157 (276)
T PRK06482 79 VVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLR-RQGGGRIVQVSSEGGQIAYPGFSLYHATKWGIEG 157 (276)
T ss_pred EEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH-hcCCCEEEEEcCcccccCCCCCchhHHHHHHHHH
Confidence 999999998777777888999999999999999999999999997 3446899999999998888999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh------------hhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD------------VVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~------------~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
|+++++.+++++||+|+.|+||.+.|++........ ..............++++++++++..+..+.
T Consensus 158 ~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~a~~~~~~~~~ 236 (276)
T PRK06482 158 FVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSFAIPGDPQKMVQAMIASADQTP 236 (276)
T ss_pred HHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhccCCCCCCHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999854321100 0001111111123689999999999876553
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=250.12 Aligned_cols=234 Identities=25% Similarity=0.347 Sum_probs=191.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
|+++||||++|||++++++|+++|++|++. .|+.++.++...++...+.++..+.+|++++++++++++++.+.++++|
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~id 81 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLA 81 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCCC
Confidence 689999999999999999999999999874 6777777777777766666788899999999999999999999999999
Q ss_pred EEEEccccC-CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCcEEEEecCccCcCCCCC-ChhhhHHHH
Q psy4557 796 ILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR--RPGHILNISSNAGVRPFAG-LAVYTGTKY 871 (958)
Q Consensus 796 ilInnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~--~~g~IV~isS~~g~~~~~~-~~~Y~asKa 871 (958)
++|||||.. ....+.+.+.++|+.++++|+.|++++++.+++.|.+.. .+|+||++||.++..+.|+ +..|+++|+
T Consensus 82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~~~~~Y~~sK~ 161 (247)
T PRK09730 82 ALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPGEYVDYAASKG 161 (247)
T ss_pred EEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCCcccchHhHHH
Confidence 999999986 345567889999999999999999999999999997432 3589999999998888776 468999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
++++++++++.++.+.||++++|+||++.|++......+....... .....+..+|+++|+.++++++++. .++++..
T Consensus 162 ~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~-~~~~g~~ 240 (247)
T PRK09730 162 AIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQPEEVAQAIVWLLSDKA-SYVTGSF 240 (247)
T ss_pred HHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCCHHHHHHHHhcCCCCCCcCHHHHHHHHHhhcChhh-cCccCcE
Confidence 9999999999999999999999999999999754322221111111 1112234689999999999776543 3466644
Q ss_pred e
Q psy4557 951 I 951 (958)
Q Consensus 951 i 951 (958)
+
T Consensus 241 ~ 241 (247)
T PRK09730 241 I 241 (247)
T ss_pred E
Confidence 4
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=340.75 Aligned_cols=112 Identities=24% Similarity=0.416 Sum_probs=105.3
Q ss_pred CCccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHC
Q psy4557 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (958)
Q Consensus 9 ~~~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G 88 (958)
++...+++++|+++++++||++|+++ .+.++||+||+++++++|++|++.|+++|++|+|++++|+++++++|||+|+|
T Consensus 3716 ~~~~~~~~~~~~~~~~~~p~~~Av~~-~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG 3794 (4334)
T PRK05691 3716 YPLEQSYVRLFEAQVAAHPQRIAASC-LDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAG 3794 (4334)
T ss_pred CccccCHHHHHHHHHHhCCCceEEEc-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhC
Confidence 34456899999999999999999986 45689999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 89 ~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
++||||||.+|.+|+.+|+++++++++|++..+
T Consensus 3795 ~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~ 3827 (4334)
T PRK05691 3795 AGYLPLDPGLPAQRLQRIIELSRTPVLVCSAAC 3827 (4334)
T ss_pred cEEeCCCCCChHHHHHHHHHhcCCCEEEecCcc
Confidence 999999999999999999999999999998753
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=251.79 Aligned_cols=206 Identities=25% Similarity=0.311 Sum_probs=175.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||++|||+++|++|+++|++|++++|+.++++++.+. ..++.++++|+++.++++++++++. ..+|+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~---~~~d~ 74 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----SANIFTLAFDVTDHPGTKAALSQLP---FIPEL 74 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----cCCCeEEEeeCCCHHHHHHHHHhcc---cCCCE
Confidence 7899999999999999999999999999999998877766543 2357788999999999999988764 24799
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHH
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l 876 (958)
+|||||........+.+.++|++++++|+.|++++++.+.|+|. .+++||++||.++..+.++...|++||+++++|
T Consensus 75 ~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~~~ 151 (240)
T PRK06101 75 WIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLS---CGHRVVIVGSIASELALPRAEAYGASKAAVAYF 151 (240)
T ss_pred EEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCeEEEEechhhccCCCCCchhhHHHHHHHHH
Confidence 99999976444445678899999999999999999999999985 247899999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 877 ~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+++++.|+.++||+|++|+||+++|+|...... . .....+|+++|+.++..+.+..
T Consensus 152 ~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~~-------~---~~~~~~~~~~a~~i~~~i~~~~ 207 (240)
T PRK06101 152 ARTLQLDLRPKGIEVVTVFPGFVATPLTDKNTF-------A---MPMIITVEQASQEIRAQLARGK 207 (240)
T ss_pred HHHHHHHHHhcCceEEEEeCCcCCCCCcCCCCC-------C---CCcccCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999998653210 0 1124689999999999887653
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=251.46 Aligned_cols=230 Identities=22% Similarity=0.376 Sum_probs=191.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+++||||++|||+++|+.|+++|++|++++|+.++++++.+.+. +.++..+.+|+++.+++.++++++.+.++++|
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 79 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG--DARFVPVACDLTDAASLAAALANAAAERGPVD 79 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 6899999999999999999999999999999999988888777663 34678889999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
++|||||.....++.+.+.++|.+.+++|+.|++.+.+++++.|.+ ++.|+||++||..+..+ .+...|+++|+++.+
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~~sS~~~~~~-~~~~~y~~sK~a~~~ 157 (257)
T PRK07074 80 VLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLK-RSRGAVVNIGSVNGMAA-LGHPAYSAAKAGLIH 157 (257)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCeEEEEEcchhhcCC-CCCcccHHHHHHHHH
Confidence 9999999976667778899999999999999999999999999974 44589999999877643 466789999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
++++++.+++++||+|++++||++.|++...... +....... ......+..++|+++++++++. +....++|..
T Consensus 158 ~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~-~~~~~~~g~~ 234 (257)
T PRK07074 158 YTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKWYPLQDFATPDDVANAVLFLAS-PAARAITGVC 234 (257)
T ss_pred HHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC-chhcCcCCcE
Confidence 9999999999999999999999999998543211 11111111 1123457899999999999775 4334554444
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=249.74 Aligned_cols=213 Identities=21% Similarity=0.245 Sum_probs=185.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.|+++||||++|||+++|++|+++|++|++++|+.++.+++.+++... +.++.++++|++++++++++++++.+ ++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~ 77 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPA---LP 77 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhh---cC
Confidence 368999999999999999999999999999999998887777666433 34688899999999999999988765 46
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
|++|||||......+.+.+.+++.+++++|+.|++++++++.|.|.+ ++.|+||++||..+..+.++...|+++|+++.
T Consensus 78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~ 156 (243)
T PRK07102 78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEA-RGSGTIVGISSVAGDRGRASNYVYGSAKAALT 156 (243)
T ss_pred CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-CCCCEEEEEecccccCCCCCCcccHHHHHHHH
Confidence 99999999877667778899999999999999999999999999974 34689999999999988899999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+|+++++.|+.+.||+|++|+||+++|++..... . ......+|+++++.++..+.++.
T Consensus 157 ~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~~~---------~-~~~~~~~~~~~a~~i~~~~~~~~ 214 (243)
T PRK07102 157 AFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAGLK---------L-PGPLTAQPEEVAKDIFRAIEKGK 214 (243)
T ss_pred HHHHHHHHHhhccCcEEEEEecCcccChhhhccC---------C-CccccCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999753211 0 12245789999999999888664
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=339.30 Aligned_cols=111 Identities=28% Similarity=0.514 Sum_probs=105.0
Q ss_pred CccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCC
Q psy4557 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (958)
Q Consensus 10 ~~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~ 89 (958)
+...+++++|+++++++|+++|+++ +++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|+
T Consensus 3092 ~~~~~~~~l~~~~a~~~p~~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa 3170 (3956)
T PRK12467 3092 PSERLVHQLIEAQVARTPEAPALVF-GDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGG 3170 (3956)
T ss_pred CccccHHHHHHHHHHhCCCcceEee-CCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCc
Confidence 3346899999999999999999987 467899999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 90 v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+||||||.+|.+|+.+|+++++++++|++..+
T Consensus 3171 ~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~ 3202 (3956)
T PRK12467 3171 AYVPLDPEYPRERLAYMIEDSGVKLLLTQAHL 3202 (3956)
T ss_pred EeecCCCCChHHHHHHHHhCCCCcEEEechhh
Confidence 99999999999999999999999999998755
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=247.34 Aligned_cols=237 Identities=26% Similarity=0.405 Sum_probs=198.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||+++||++++++|+++|++|++++|+.+++.+..+.+...+.++.++.+|+++.++++++++++.+.++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 36789999999999999999999999999999999998888887777766666688899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-CCCCCChhhhHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-RPFAGLAVYTGTKY 871 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-~~~~~~~~Y~asKa 871 (958)
++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|.+. +.++||++||..+. .+.++.+.|+++|+
T Consensus 83 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~ss~~~~~~~~~~~~~y~~sK~ 161 (251)
T PRK12826 83 RLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRA-GGGRIVLTSSVAGPRVGYPGLAHYAASKA 161 (251)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEechHhhccCCCCccHHHHHHH
Confidence 99999999998877777788999999999999999999999999999744 36899999999988 78888999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
++++++++++.++...|+++++|.||++.|++.............. ..+..++.+++|+|..+++++..+. ..++|..
T Consensus 162 a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~-~~~~g~~ 240 (251)
T PRK12826 162 GLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQWAEAIAAAIPLGRLGEPEDIAAAVLFLASDEA-RYITGQT 240 (251)
T ss_pred HHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccc-cCcCCcE
Confidence 9999999999999999999999999999999765432211011111 1122256899999999999665443 3445544
Q ss_pred e
Q psy4557 951 I 951 (958)
Q Consensus 951 i 951 (958)
+
T Consensus 241 ~ 241 (251)
T PRK12826 241 L 241 (251)
T ss_pred E
Confidence 3
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=247.80 Aligned_cols=224 Identities=27% Similarity=0.380 Sum_probs=186.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++|+++||||++|||+++|++|+++|++|++..|+ .+...+....+...+.+...+.+|+++.+++.++++++.+.++
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999887754 4455555555555555677889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....++.+.+.+.|++.+++|+.|++.+++.++|.|. . .|+||++||.++..+.++...|++||++
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~--~~~iv~~sS~~~~~~~~~~~~Y~~sK~~ 160 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMR-E--GGAIVNIASVAGIRPAYGLSIYGAMKAA 160 (252)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhh-c--CcEEEEEcchhccCCCCCchHHHHHHHH
Confidence 999999999997777777888899999999999999999999999985 2 4899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhhhhhh--ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDVVDKY--DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~~--~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+++++++++.|+++ +|+++.|.||+++|++...... ......+ ......+...|+|+|+.+++++..+
T Consensus 161 ~~~~~~~l~~~~~~-~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~ 232 (252)
T PRK06077 161 VINLTKYLALELAP-KIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEKFTLMGKILDPEEVAEFVAAILKIE 232 (252)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEeeCCccChHHHhhhhcccccHHHHHHhcCcCCCCCCHHHHHHHHHHHhCcc
Confidence 99999999999988 9999999999999997532111 0000011 1112235689999999999987644
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=246.55 Aligned_cols=223 Identities=21% Similarity=0.318 Sum_probs=181.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+.+|+++||||++|||+++|++|+++|++|++++|+.+. . .. ..++.+|+++.++++++++++.+.+ +
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~------~---~~--~~~~~~D~~~~~~~~~~~~~~~~~~-~ 68 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID------D---FP--GELFACDLADIEQTAATLAQINEIH-P 68 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc------c---cC--ceEEEeeCCCHHHHHHHHHHHHHhC-C
Confidence 367999999999999999999999999999999998653 0 11 2367899999999999999998876 5
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|++|||||.....++.+.+.++|++++++|+.|++.+++.++|.|.+. +.|+||++||.+ ..+.++...|++||+++
T Consensus 69 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~-~~~~~~~~~Y~~sK~a~ 146 (234)
T PRK07577 69 VDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLR-EQGRIVNICSRA-IFGALDRTSYSAAKSAL 146 (234)
T ss_pred CcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcccc-ccCCCCchHHHHHHHHH
Confidence 8999999999877777788999999999999999999999999999744 468999999986 44667889999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
++|+++++.|+++.||+|++|+||++.|++...... ....... ......+..+|+++|..+++++.++ ...+++..
T Consensus 147 ~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~~~~~g~~ 225 (234)
T PRK07577 147 VGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIPMRRLGTPEEVAAAIAFLLSDD-AGFITGQV 225 (234)
T ss_pred HHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcCCCCCCcCHHHHHHHHHHHhCcc-cCCccceE
Confidence 999999999999999999999999999998653211 1111111 1111223568999999999987654 34555544
Q ss_pred e
Q psy4557 951 I 951 (958)
Q Consensus 951 i 951 (958)
+
T Consensus 226 ~ 226 (234)
T PRK07577 226 L 226 (234)
T ss_pred E
Confidence 4
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=247.15 Aligned_cols=229 Identities=24% Similarity=0.346 Sum_probs=188.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+.+++.|+++|++|++++|+.++++++.+.. ...++.+|+++.+++.++++. ++
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~----~~ 76 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET-----GCEPLRLDVGDDAAIRAALAA----AG 76 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeEEEecCCCHHHHHHHHHH----hC
Confidence 478999999999999999999999999999999999988777665543 245678999999988777654 67
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||........+.+.++|++++++|+.+++.+++.+++.|.+....|+||++||.++..+.++...|+++|++
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sK~a 156 (245)
T PRK07060 77 AFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLPDHLAYCASKAA 156 (245)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCCCCcHhHHHHHH
Confidence 89999999999876677778899999999999999999999999998744435899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-CChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-TDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
++.++++++.++.+.||++++|+||++.|++.... ..+...... ......++.+++|+|+++++++..+ ...++|..
T Consensus 157 ~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~-~~~~~G~~ 235 (245)
T PRK07060 157 LDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAAIPLGRFAEVDDVAAPILFLLSDA-ASMVSGVS 235 (245)
T ss_pred HHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcc-cCCccCcE
Confidence 99999999999999999999999999999985421 111111111 1112345789999999999977654 34566665
Q ss_pred e
Q psy4557 951 I 951 (958)
Q Consensus 951 i 951 (958)
+
T Consensus 236 ~ 236 (245)
T PRK07060 236 L 236 (245)
T ss_pred E
Confidence 5
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=244.58 Aligned_cols=236 Identities=29% Similarity=0.435 Sum_probs=195.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh-hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~-~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++++|+++||||++|||.++++.|+++|++|+++.|+.+ ..++..+++...+.++..+.+|+++.+++.++++++.+.+
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEF 81 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999988888754 4666666665556678888999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|++|||||......+.+.+.+.|++++++|+.+++.+.+.+++.+.+ .+.+++|++||.++..+.++...|+++|+
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~~v~iss~~~~~~~~~~~~y~~sk~ 160 (248)
T PRK05557 82 GGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMK-QRSGRIINISSVVGLMGNPGQANYAASKA 160 (248)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCeEEEEEcccccCcCCCCCchhHHHHH
Confidence 99999999999887777778889999999999999999999999999863 34579999999998888899999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
++++++++++.++...||++++|+||+++|++...... ....... .........+++++..+.+++.. ....+++..
T Consensus 161 a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~~ 238 (248)
T PRK05557 161 GVIGFTKSLARELASRGITVNAVAPGFIETDMTDALPE-DVKEAILAQIPLGRLGQPEEIASAVAFLASD-EAAYITGQT 238 (248)
T ss_pred HHHHHHHHHHHHhhhhCeEEEEEecCccCCccccccCh-HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-ccCCccccE
Confidence 99999999999999999999999999999998654321 1111111 11223457899999999986654 334555543
Q ss_pred e
Q psy4557 951 I 951 (958)
Q Consensus 951 i 951 (958)
+
T Consensus 239 ~ 239 (248)
T PRK05557 239 L 239 (248)
T ss_pred E
Confidence 3
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=256.60 Aligned_cols=312 Identities=18% Similarity=0.178 Sum_probs=210.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||+||+++|+++ +.+|++++|..+.... ..+.. + .....++.++.+|++.
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~-~~~~~-~---------~~~~~~~~~~~~Dl~d----- 71 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLER-GYTVKGTVRNPDDPKN-THLRE-L---------EGGKERLILCKADLQD----- 71 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCchhhhH-HHHHH-h---------hCCCCcEEEEecCcCC-----
Confidence 3568999999999999999999976 4689999886432110 01111 0 0012468888999874
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecc-cccCCCCC----CCcccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTD-SIYPSTSE----NFQEDY 472 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~-~v~~~~~~----~~~e~~ 472 (958)
.+.+..+...+|+|||+||.+. .....+..+|+.||.++++.|.+.++++|+|+||. ++||.... .+.|+.
T Consensus 72 --~~~~~~~~~~~d~Vih~A~~~~--~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~ 147 (342)
T PLN02214 72 --YEALKAAIDGCDGVFHTASPVT--DDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESC 147 (342)
T ss_pred --hHHHHHHHhcCCEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCccc
Confidence 3566777788999999999753 34567788999999999999998888999999996 68874321 133332
Q ss_pred cccCcCCCCCCCCChhHHHHHHHHHHHHH-hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCC-CCc
Q psy4557 473 TVADFDDFMTTTSGYGQSKIVSEYLVLNA-GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI-DWY 550 (958)
Q Consensus 473 ~~~~~~~~~~~~~gY~~SK~~aE~lv~~a-~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~-~~~ 550 (958)
. .+.+.+..+.+.|+.||+.+|+++..+ .+.|++++++||++|||+......+. .+..+++. ..|..+.. +..
T Consensus 148 ~-~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~--~~~~~~~~--~~g~~~~~~~~~ 222 (342)
T PLN02214 148 W-SDLDFCKNTKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINA--SLYHVLKY--LTGSAKTYANLT 222 (342)
T ss_pred C-CChhhccccccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCc--hHHHHHHH--HcCCcccCCCCC
Confidence 1 111112235678999999999999875 45699999999999999976432221 12222221 12322221 345
Q ss_pred CCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccCCCchhHHHHhhcc
Q psy4557 551 LEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQILRNKG 630 (958)
Q Consensus 551 ~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~~~ 630 (958)
.+|++|+++|++++.++.... .+..||+.+ ..+++.++++.+.+.--.+ .+|. |.. ....
T Consensus 223 ~~~i~V~Dva~a~~~al~~~~-~~g~yn~~~-~~~~~~el~~~i~~~~~~~-~~~~--~~~--~~~~------------- 282 (342)
T PLN02214 223 QAYVDVRDVALAHVLVYEAPS-ASGRYLLAE-SARHRGEVVEILAKLFPEY-PLPT--KCK--DEKN------------- 282 (342)
T ss_pred cCeeEHHHHHHHHHHHHhCcc-cCCcEEEec-CCCCHHHHHHHHHHHCCCC-CCCC--CCc--cccC-------------
Confidence 799999999999999886654 345899987 5789999999998751111 1221 100 0000
Q ss_pred ccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q psy4557 631 KEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVPL 682 (958)
Q Consensus 631 ~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~~~~~ 682 (958)
+ ......+|+++++ ++|+++.++ ++-|+..++++.+.|+|++|+.
T Consensus 283 ~--~~~~~~~d~~k~~----~LG~~p~~l-ee~i~~~~~~~~~~~~~~~~~~ 327 (342)
T PLN02214 283 P--RAKPYKFTNQKIK----DLGLEFTST-KQSLYDTVKSLQEKGHLAPPPP 327 (342)
T ss_pred C--CCCccccCcHHHH----HcCCcccCH-HHHHHHHHHHHHHcCCCCCCCC
Confidence 0 0112346777764 388876433 5678889999999999977665
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=235.98 Aligned_cols=163 Identities=31% Similarity=0.516 Sum_probs=153.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecC--hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARR--IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~--~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
|+++||||++|||+++|++|+++|+ .|++++|+ .+..+++.+++...+.++.++++|+++.++++++++++.+.+++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999966 77888998 78888888888877788999999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|++|||||+...+++.+.+.++|+++|++|+.+++++.+.++| . +.|+||++||.++..+.|+.+.|++||+|+
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~---~~g~iv~~sS~~~~~~~~~~~~Y~askaal 155 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP--Q---GGGKIVNISSIAGVRGSPGMSAYSASKAAL 155 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH--H---TTEEEEEEEEGGGTSSSTTBHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehhee--c---cccceEEecchhhccCCCCChhHHHHHHHH
Confidence 99999999999888899999999999999999999999999999 2 469999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy4557 874 EGISGALRQEV 884 (958)
Q Consensus 874 ~~l~~~la~el 884 (958)
.+|+++|++|+
T Consensus 156 ~~~~~~la~e~ 166 (167)
T PF00106_consen 156 RGLTQSLAAEL 166 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999996
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=265.55 Aligned_cols=261 Identities=17% Similarity=0.174 Sum_probs=179.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++|||||||||||+||+++|+++++.+|+++.|.... ..++.. .+. ..+..+++++.||+..
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~---~~~l~~----~~~----~~~~~~~~~~~~Dl~d----- 76 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDK---IKHLLE----PDT----VPWSGRIQFHRINIKH----- 76 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchh---hhhhhc----ccc----ccCCCCeEEEEcCCCC-----
Confidence 456899999999999999999998766789999875321 111110 000 0123578999999863
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~ 473 (958)
.+.+..+..++|+|||+||.++.. ....+....|+.||.+|+++|++.+ ++|+|+||.+|||.... ...|+.+
T Consensus 77 --~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~~~~~e~~p 153 (386)
T PLN02427 77 --DSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIGSFLPKDHP 153 (386)
T ss_pred --hHHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcCCCCCcccc
Confidence 356667777899999999976432 2222345689999999999998776 89999999999985421 1122111
Q ss_pred ccC--------c-------CCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCC---CCcChhH----H
Q psy4557 474 VAD--------F-------DDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEF---KNWNLVD----L 530 (958)
Q Consensus 474 ~~~--------~-------~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~---g~~n~~d----~ 530 (958)
... . .+...+.+.|+.||+++|+++..+. +.|++++|+||++|||+... +.++..+ +
T Consensus 154 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~ 233 (386)
T PLN02427 154 LRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRV 233 (386)
T ss_pred cccccccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchH
Confidence 100 0 0001235689999999999998754 56999999999999999753 2222222 2
Q ss_pred HHHHHHHHHHhCCc---CCCCCcCCcccHHHHHHHHHHHhcCcC-CCCceEEecCC-CCCCHHHHHHHHHHc
Q psy4557 531 NLYILKAITRLGYA---PDIDWYLEFTPVDFLTKSLVQLTTNVN-NANKIYNFINT-NPIHIKTLVSVLNTY 597 (958)
Q Consensus 531 ~~~l~~~~~~~g~~---P~~~~~~~~~pVD~va~aiv~l~~~~~-~~~~v~h~~n~-~~~~~~~l~~~l~~~ 597 (958)
+..+++....-+-+ .+....++|++||++|++++.+..+.. ..+.+||++++ +++++.|+++.+.+.
T Consensus 234 i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~ 305 (386)
T PLN02427 234 LACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEV 305 (386)
T ss_pred HHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHH
Confidence 32333333322211 123345799999999999998876543 34679999998 599999999999764
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=247.61 Aligned_cols=227 Identities=22% Similarity=0.311 Sum_probs=181.7
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHH-HHHHc---CC
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVRE-VLAEL---GH 793 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~-~~~~~---g~ 793 (958)
+++||||++|||+++|++|+++|++|++++|+.+.. + ....+.++..+++|+++.+++++++.+ +.+.+ ++
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~--~---~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS--L---AAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGAS 77 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh--h---hhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCC
Confidence 699999999999999999999999999999986531 1 122344678899999999999998877 55555 47
Q ss_pred ccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 794 IDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 794 iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+|++|||||.... .++.+.+.++|++++++|+.|++.+++.+++.|.+ +..|+||++||..+..+.+++..|+++|++
T Consensus 78 ~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a 156 (243)
T PRK07023 78 RVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASD-AAERRILHISSGAARNAYAGWSVYCATKAA 156 (243)
T ss_pred ceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhc-cCCCEEEEEeChhhcCCCCCchHHHHHHHH
Confidence 9999999998653 45677899999999999999999999999999974 456899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC--Ch---hhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST--DR---DVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~--~~---~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
+++++++++.+ .+.||+|++|+||+++|++..... .. .....+ ......+..+|+++|..++..+.++.....
T Consensus 157 ~~~~~~~~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~l~~~~~~~~ 235 (243)
T PRK07023 157 LDHHARAVALD-ANRALRIVSLAPGVVDTGMQATIRATDEERFPMRERFRELKASGALSTPEDAARRLIAYLLSDDFGST 235 (243)
T ss_pred HHHHHHHHHhc-CCCCcEEEEecCCccccHHHHHHHhcccccchHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccccCCC
Confidence 99999999999 888999999999999999743210 00 000111 111224578999999977766777766555
Q ss_pred cceEe
Q psy4557 947 NSILI 951 (958)
Q Consensus 947 ~~~~i 951 (958)
..+.+
T Consensus 236 ~~~~~ 240 (243)
T PRK07023 236 PTADI 240 (243)
T ss_pred Ceeec
Confidence 54443
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=246.10 Aligned_cols=215 Identities=20% Similarity=0.260 Sum_probs=170.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcC--CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
|+++|||||+|||+++|++|+++| +.|++..|+... + . ...++.++++|+++.++++++ .+.++++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~--~----~--~~~~~~~~~~Dls~~~~~~~~----~~~~~~i 68 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKP--D----F--QHDNVQWHALDVTDEAEIKQL----SEQFTQL 68 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcc--c----c--ccCceEEEEecCCCHHHHHHH----HHhcCCC
Confidence 479999999999999999999985 566666665431 1 1 134677899999999988774 4567899
Q ss_pred cEEEEccccCCC------ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC---CCCCChh
Q psy4557 795 DILVNNAGVMYF------TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR---PFAGLAV 865 (958)
Q Consensus 795 DilInnAG~~~~------~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~---~~~~~~~ 865 (958)
|+||||||.... ..+.+.+.+.|++++++|+.|++.+++.++|.|.+ ++.|+|+++||..+.. +.+++..
T Consensus 69 d~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~-~~~~~i~~iss~~~~~~~~~~~~~~~ 147 (235)
T PRK09009 69 DWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQ-SESAKFAVISAKVGSISDNRLGGWYS 147 (235)
T ss_pred CEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccc-cCCceEEEEeecccccccCCCCCcch
Confidence 999999998742 34667888999999999999999999999999973 4458999999876643 3567789
Q ss_pred hhHHHHHHHHHHHHHHHHhCC--CCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSD--RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~--~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|+++|+|+.+|+++|+.|+.+ .||+||+|+||+++|+|...... . ....+..+|+++|+.+++++..+.
T Consensus 148 Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~~~-------~-~~~~~~~~~~~~a~~~~~l~~~~~- 218 (235)
T PRK09009 148 YRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPFQQ-------N-VPKGKLFTPEYVAQCLLGIIANAT- 218 (235)
T ss_pred hhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcchhh-------c-cccCCCCCHHHHHHHHHHHHHcCC-
Confidence 999999999999999999987 69999999999999998643210 0 112335799999999999887653
Q ss_pred ccccceEecC
Q psy4557 944 SAVNSILIEP 953 (958)
Q Consensus 944 ~~i~~~~i~p 953 (958)
..++|..+.-
T Consensus 219 ~~~~g~~~~~ 228 (235)
T PRK09009 219 PAQSGSFLAY 228 (235)
T ss_pred hhhCCcEEee
Confidence 3556666643
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=236.84 Aligned_cols=248 Identities=22% Similarity=0.216 Sum_probs=186.6
Q ss_pred ceEEeccccchHHHHHHHHhcCCC-CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTK-CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||.|||||+.++.++.+.. .+|.++..=.- ....+.+... ...+|..++.||+..
T Consensus 2 ~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTY-Agn~~~l~~~-----------~~~~~~~fv~~DI~D------- 62 (340)
T COG1088 2 KILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTY-AGNLENLADV-----------EDSPRYRFVQGDICD------- 62 (340)
T ss_pred cEEEecCcchHHHHHHHHHHhcCCCceEEEEecccc-cCCHHHHHhh-----------hcCCCceEEeccccC-------
Confidence 689999999999999999998755 56888765321 1111222211 113689999999873
Q ss_pred HHHHHHHhc--ccCEEEEcccccCcccC---hHHHHhhhHHHHHHHHHhhccCCC-ccEEEEecccccCCCCCCCccccc
Q psy4557 400 QDEYVSLSY--EIDMIIHAAAFVNLILP---YNALYKSNVLATKNLIEFSFLNKI-KSFHYVSTDSIYPSTSENFQEDYT 473 (958)
Q Consensus 400 ~~~~~~l~~--~vd~IiH~AA~v~~~~~---~~~~~~~NV~gt~~ll~~a~~~~~-k~~~~vST~~v~~~~~~~~~e~~~ 473 (958)
.+....+.. ++|+|+|.||..|...+ .+.|..+||.||.+||+.+++... .+||||||..|||.-... .+
T Consensus 63 ~~~v~~~~~~~~~D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~----~~ 138 (340)
T COG1088 63 RELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLD----DD 138 (340)
T ss_pred HHHHHHHHHhcCCCeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCC----CC
Confidence 455666665 69999999998776444 457899999999999999998765 489999999999965321 11
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---CCCC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---DIDW 549 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~~~~ 549 (958)
...+.++..|.++|+.||..+.++++... .+|+|++|.||+|-|||.+... -++++++.-++.-..+| +..+
T Consensus 139 ~FtE~tp~~PsSPYSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpE----KlIP~~I~nal~g~~lpvYGdG~~ 214 (340)
T COG1088 139 AFTETTPYNPSSPYSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPE----KLIPLMIINALLGKPLPVYGDGLQ 214 (340)
T ss_pred CcccCCCCCCCCCcchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCch----hhhHHHHHHHHcCCCCceecCCcc
Confidence 12223455788999999999999998864 5799999999999999997543 45666665544433334 3346
Q ss_pred cCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 550 YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
..||++|++-|+||-.+..+.. .|++||+...+..+--++++.|-+
T Consensus 215 iRDWl~VeDh~~ai~~Vl~kg~-~GE~YNIgg~~E~~Nlevv~~i~~ 260 (340)
T COG1088 215 IRDWLYVEDHCRAIDLVLTKGK-IGETYNIGGGNERTNLEVVKTICE 260 (340)
T ss_pred eeeeEEeHhHHHHHHHHHhcCc-CCceEEeCCCccchHHHHHHHHHH
Confidence 6999999999999988887655 499999998888888888877654
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-26 Score=277.98 Aligned_cols=226 Identities=24% Similarity=0.310 Sum_probs=195.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.++||+++||||++|||+++|+.|+++|++|++++|+.++++++.+++... ..+.++.+|++++++++++++++.+.+|
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999999999888887777544 5688899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....++.+.+.++|++++++|+.|++.+++.+++.|.++..+|+||++||..+..+.++.+.|++||++
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~~~~~Y~asKaa 577 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGPNFGAYGAAKAA 577 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCCCcHHHHHHHHH
Confidence 99999999999888888889999999999999999999999999999754435899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcc--cCCCCCCCCCh----------h-hhhhhcc-ccCCCCCCHHHHHHHHHHHh
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDV--KTELLSHSTDR----------D-VVDKYDI-SKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v--~T~~~~~~~~~----------~-~~~~~~~-~~~~~~~~p~~ia~~i~~~l 938 (958)
+++++++++.++++.||+||+|+||.| .|+++...... . ....+.. ....+...++|+|+++++++
T Consensus 578 ~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~ 657 (681)
T PRK08324 578 ELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYRARNLLKREVTPEDVAEAVVFLA 657 (681)
T ss_pred HHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHHhcCCcCCccCHHHHHHHHHHHh
Confidence 999999999999999999999999999 88876432100 0 0001111 11234689999999999977
Q ss_pred c
Q psy4557 939 L 939 (958)
Q Consensus 939 ~ 939 (958)
.
T Consensus 658 s 658 (681)
T PRK08324 658 S 658 (681)
T ss_pred C
Confidence 5
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=242.93 Aligned_cols=209 Identities=23% Similarity=0.274 Sum_probs=173.6
Q ss_pred EEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEEEE
Q psy4557 720 FVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVN 799 (958)
Q Consensus 720 lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilIn 799 (958)
+||||++|||+++|++|+++|++|++++|+.++++++.+.+.. +..+.++.+|+++++++.+++++ ++++|+|||
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~----~~~id~li~ 75 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-GAPVRTAALDITDEAAVDAFFAE----AGPFDHVVI 75 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCceEEEEccCCCHHHHHHHHHh----cCCCCEEEE
Confidence 6999999999999999999999999999998888877766642 45678889999999999887765 589999999
Q ss_pred ccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHHHHH
Q psy4557 800 NAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGA 879 (958)
Q Consensus 800 nAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l~~~ 879 (958)
|||.....++.+.+.++|++++++|+.+++++++ ++.|. +.|+||++||.++..+.++.+.|+++|+++++|+|+
T Consensus 76 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~---~~g~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~ 150 (230)
T PRK07041 76 TAADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR--AARIA---PGGSLTFVSGFAAVRPSASGVLQGAINAALEALARG 150 (230)
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhc---CCeEEEEECchhhcCCCCcchHHHHHHHHHHHHHHH
Confidence 9999877777788999999999999999999999 44452 358999999999999999999999999999999999
Q ss_pred HHHHhCCCCcEEEEEECCcccCCCCCCCCCh---hhhhhhc-cccCCCCCCHHHHHHHHHHHhcC
Q psy4557 880 LRQEVSDRNIKVTCIQAGDVKTELLSHSTDR---DVVDKYD-ISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 880 la~el~~~gIrv~~v~PG~v~T~~~~~~~~~---~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
++.|+.. |||++|+||+++|+++...... ....... .....+..+|+|+|+.+++++.+
T Consensus 151 la~e~~~--irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~ 213 (230)
T PRK07041 151 LALELAP--VRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPARRVGQPEDVANAILFLAAN 213 (230)
T ss_pred HHHHhhC--ceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcC
Confidence 9999975 9999999999999986532111 1111111 11223457899999999998764
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-26 Score=244.33 Aligned_cols=221 Identities=21% Similarity=0.287 Sum_probs=183.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+++||||++|||++++++|+++|++|++++|+.+.++++.+.....+..+.++.+|+++.+++.+++. +++|
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~id 75 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAE------WDVD 75 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhc------CCCC
Confidence 6799999999999999999999999999999999888877777665555668888999999988876543 4799
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
+||||||.....++.+.+.+.|++++++|+.|++.+++.+++.|.+.+ .|+||++||..+..+.++...|++||+++++
T Consensus 76 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~SS~~~~~~~~~~~~Y~~sK~a~~~ 154 (257)
T PRK09291 76 VLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARG-KGKVVFTSSMAGLITGPFTGAYCASKHALEA 154 (257)
T ss_pred EEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEcChhhccCCCCcchhHHHHHHHHH
Confidence 999999998777888899999999999999999999999999997544 4899999999999888899999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh-------h--hhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR-------D--VVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~-------~--~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
++++++.++.+.||++++|+||++.|++....... . ..............++++++..++..+..+..
T Consensus 155 ~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (257)
T PRK09291 155 IAEAMHAELKPFGIQVATVNPGPYLTGFNDTMAETPKRWYDPARNFTDPEDLAFPLEQFDPQEMIDAMVEVIPADTG 231 (257)
T ss_pred HHHHHHHHHHhcCcEEEEEecCcccccchhhhhhhhhhhcchhhHHHhhhhhhccccCCCHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999875421110 0 00000111112347899999999998776543
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-26 Score=235.42 Aligned_cols=245 Identities=24% Similarity=0.306 Sum_probs=178.8
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+||||||+||||||.+.+|++.+...|+...-..+...+..+. .+.++.||+.+ .
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~------------------~~~f~~gDi~D-------~ 56 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL------------------QFKFYEGDLLD-------R 56 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc------------------cCceEEecccc-------H
Confidence 6999999999999999999986543333333333322221110 15789999863 2
Q ss_pred HHHHHH--hcccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcccccc
Q psy4557 401 DEYVSL--SYEIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYTV 474 (958)
Q Consensus 401 ~~~~~l--~~~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~~ 474 (958)
+...++ ..++|.|||.||....-. ..-.++..||.||.+||+.+.+.++++|+|.||..|||.... ++.|+
T Consensus 57 ~~L~~vf~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~--- 133 (329)
T COG1087 57 ALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISET--- 133 (329)
T ss_pred HHHHHHHHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCC---
Confidence 333433 358999999999864432 234567899999999999999999999999999999997543 34443
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCC---Cc--ChhHHHHHHHHHHHHhCCc----
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFK---NW--NLVDLNLYILKAITRLGYA---- 544 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g---~~--n~~d~~~~l~~~~~~~g~~---- 544 (958)
.+..+.|+||+||++.|+++.... ..|++++++|.+|+.|....| .+ +....++.+++.+. |..
T Consensus 134 ----~~~~p~NPYG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~--G~r~~l~ 207 (329)
T COG1087 134 ----SPLAPINPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAAL--GKRDKLF 207 (329)
T ss_pred ----CCCCCCCcchhHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHh--cCCceeE
Confidence 334578999999999999998754 469999999999999976554 33 34566666665543 332
Q ss_pred ------CCCC--CcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCCCHHHHHHHHHHc-CC
Q psy4557 545 ------PDID--WYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPIHIKTLVSVLNTY-GY 599 (958)
Q Consensus 545 ------P~~~--~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~ 599 (958)
|.-+ --.|.++|.++|++-+.....- .....+||+++.+..|+.|+++.+++. |.
T Consensus 208 ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~ 273 (329)
T COG1087 208 IFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGR 273 (329)
T ss_pred EeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCC
Confidence 2222 2389999999999998776432 223369999999999999999999864 54
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=256.11 Aligned_cols=254 Identities=20% Similarity=0.247 Sum_probs=180.8
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||+|+||+++|+++.+.+|+++.|... +..... . ..+++++.+|+.. +
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~------~~~~~~---------~--~~~~~~~~~Dl~~------~ 58 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD------RLGDLV---------N--HPRMHFFEGDITI------N 58 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH------HHHHhc---------c--CCCeEEEeCCCCC------C
Confidence 469999999999999999999876678999987432 111100 0 1368889999862 2
Q ss_pred HHHHHHHhcccCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccccc
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYTVA 475 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~~~ 475 (958)
.+....+.+++|+|||+||..+. .........+|+.||.+|+++|++.+ ++|+|+||.+|||.... .+.|+.++.
T Consensus 59 ~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~~~~~ee~~~~ 137 (347)
T PRK11908 59 KEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPDEEFDPEASPL 137 (347)
T ss_pred HHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCCcCcCcccccc
Confidence 23455566789999999997543 22334567899999999999998877 79999999999985432 233332221
Q ss_pred CcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcC----hhHHHHHHHHHHHHhCCcC---CC
Q psy4557 476 DFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWN----LVDLNLYILKAITRLGYAP---DI 547 (958)
Q Consensus 476 ~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n----~~d~~~~l~~~~~~~g~~P---~~ 547 (958)
...+...+.+.|+.||+.+|+++.... +.|++++++||+++||+...+... ...++..+++.+..-+.++ +.
T Consensus 138 ~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 217 (347)
T PRK11908 138 VYGPINKPRWIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGG 217 (347)
T ss_pred ccCcCCCccchHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCC
Confidence 111111345689999999999998754 579999999999999997543211 1234555554443322111 23
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC-CCCCHHHHHHHHHHc
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT-NPIHIKTLVSVLNTY 597 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~-~~~~~~~l~~~l~~~ 597 (958)
....+|++||+++++++.+..+.. ..+++||+.++ +.+++.|+++.+.+.
T Consensus 218 ~~~r~~i~v~D~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~ 270 (347)
T PRK11908 218 SQKRAFTDIDDGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLEL 270 (347)
T ss_pred ceeeccccHHHHHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHH
Confidence 356899999999999999887643 35789999997 579999999999653
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=332.62 Aligned_cols=111 Identities=32% Similarity=0.601 Sum_probs=104.3
Q ss_pred CCccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHC
Q psy4557 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (958)
Q Consensus 9 ~~~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G 88 (958)
++...+++++|+++++++|+++|+.+ .++.+||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|
T Consensus 3053 ~~~~~~~~~~~~~~~~~~p~~~Av~~-~~~~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l~~~~s~~~iv~~lail~aG 3131 (5163)
T PRK12316 3053 YPLERGVHRLFEEQVERTPDAVALAF-GEQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAG 3131 (5163)
T ss_pred CCCcCCHHHHHHHHHHhCCCCeeEee-CCeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHHHHhC
Confidence 33446799999999999999999986 46789999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q psy4557 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (958)
Q Consensus 89 ~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~ 120 (958)
++||||||.+|.+|+++|+++++++++|++..
T Consensus 3132 a~~vpld~~~p~~rl~~il~~~~~~~~l~~~~ 3163 (5163)
T PRK12316 3132 GAYVPLDPEYPEERLAYMLEDSGAQLLLSQSH 3163 (5163)
T ss_pred ceeeecCCCCcHHHHHHHHHhcCCCEEEeCcc
Confidence 99999999999999999999999999998754
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=238.31 Aligned_cols=226 Identities=30% Similarity=0.460 Sum_probs=193.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||..++++|+++|++|++++|+.++.+.+...+...+.++.++.+|+++.+++.++++++.+.++
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999999999888888777776677788899999999999999999999899
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||.....+..+.+.++|+..+++|+.+++.+++.++|+|.+ .+.++||++||..+..+.+....|+.+|++
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-~~~~~ii~~ss~~~~~~~~~~~~y~~sk~~ 160 (246)
T PRK05653 82 ALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIK-ARYGRIVNISSVSGVTGNPGQTNYSAAKAG 160 (246)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCcEEEEECcHHhccCCCCCcHhHhHHHH
Confidence 9999999999877666778889999999999999999999999999864 345899999999988888889999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
++.++++++.++.+.|+++++|+||.+.+++..... ....... .........+++++++.+.+++..
T Consensus 161 ~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~ 228 (246)
T PRK05653 161 VIGFTKALALELASRGITVNAVAPGFIDTDMTEGLP-EEVKAEILKEIPLGRLGQPEEVANAVAFLASD 228 (246)
T ss_pred HHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhhh-HHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc
Confidence 999999999999999999999999999998764211 1111111 111223467899999999997753
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=327.00 Aligned_cols=111 Identities=29% Similarity=0.514 Sum_probs=104.4
Q ss_pred CccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCC
Q psy4557 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (958)
Q Consensus 10 ~~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~ 89 (958)
+...+++++|+++++++|+++|+++ +++.+||+||+++++++|++|++.|+++|++|+++++||+++++++|||+|+|+
T Consensus 1571 ~~~~~~~~~~~~~a~~~p~~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~ 1649 (3956)
T PRK12467 1571 PLARLVHQLIEDQAAATPEAVALVF-GEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGG 1649 (3956)
T ss_pred CccccHHHHHHHHHHhCCCCeEEEe-CCcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCc
Confidence 3345799999999999999999986 467899999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 90 v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+||||||.+|.+|+.+++++++++++|++...
T Consensus 1650 ~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~ 1681 (3956)
T PRK12467 1650 AYVPLDPEYPRERLAYMIEDSGIELLLTQSHL 1681 (3956)
T ss_pred eeeecCCCCCHHHHHHHHHhCCCCEEEeChhh
Confidence 99999999999999999999999999987654
|
|
| >KOG1221|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=260.35 Aligned_cols=276 Identities=21% Similarity=0.321 Sum_probs=198.7
Q ss_pred ccCceEEeccccchHHHHHHHHhcCC-CC-eEEEeccCCChhhHHHHHHHHHHHhccc----cccccccCceEEecccCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDT-KC-TLFCPVRETPNKTLLQRLEDIMLKYHMS----LDLNNYTDRLILVKSDLS 391 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~-~~-~V~clvR~~~~~~~~~rl~~~~~~~~~~----~~~~~~~~ri~~v~gDl~ 391 (958)
++++|||||||||||.-|+++||+.. +. +||.|+|+++..++.+|+...... .+. ....+..+|+..+.||++
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~-~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKD-PLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhh-hHHHHHHhhCccceecceecccccc
Confidence 56799999999999999999999754 43 799999999999999998765432 110 111335689999999999
Q ss_pred CCCCCCCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccC-CCccEEEEecccccCCC---CC-
Q psy4557 392 LEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSIYPST---SE- 466 (958)
Q Consensus 392 ~~~lGL~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v~~~~---~~- 466 (958)
.++||+++ .+...+.++|++|||+||.|+|..+|..-...|+.||+++++||++. +.+.|+||||..+-... .+
T Consensus 90 ~~~LGis~-~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~E~ 168 (467)
T KOG1221|consen 90 EPDLGISE-SDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIEEK 168 (467)
T ss_pred CcccCCCh-HHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccccccccc
Confidence 99999997 45668999999999999999999999988899999999999999875 56889999997664110 01
Q ss_pred CCcccc--------------ccc-----CcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCC--c
Q psy4557 467 NFQEDY--------------TVA-----DFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKN--W 525 (958)
Q Consensus 467 ~~~e~~--------------~~~-----~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~--~ 525 (958)
.+.+.. +.. ...-.....|.|.-||..||+++.+.+ .++|++|+||+.|++...... |
T Consensus 169 ~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~-~~lPivIiRPsiI~st~~EP~pGW 247 (467)
T KOG1221|consen 169 PYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA-ENLPLVIIRPSIITSTYKEPFPGW 247 (467)
T ss_pred ccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc-cCCCeEEEcCCceeccccCCCCCc
Confidence 000000 000 000011246899999999999997654 489999999999998876433 3
Q ss_pred --Chh--H-HHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc----C-CCCceEEecC--CCCCCHHHHHHH
Q psy4557 526 --NLV--D-LNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV----N-NANKIYNFIN--TNPIHIKTLVSV 593 (958)
Q Consensus 526 --n~~--d-~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~----~-~~~~v~h~~n--~~~~~~~~l~~~ 593 (958)
|.. + .+.-.-++.++. ..-+.+...|++|||+|+.+++..+... . ....+||+++ .++++|.++.+.
T Consensus 248 idn~~gp~g~i~g~gkGvlr~-~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~~e~ 326 (467)
T KOG1221|consen 248 IDNLNGPDGVIIGYGKGVLRC-FLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDFIEL 326 (467)
T ss_pred cccCCCCceEEEEeccceEEE-EEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHHHHH
Confidence 111 0 000011111110 1113345689999999999999776321 1 2356999985 669999999988
Q ss_pred HHHc
Q psy4557 594 LNTY 597 (958)
Q Consensus 594 l~~~ 597 (958)
....
T Consensus 327 ~~~~ 330 (467)
T KOG1221|consen 327 ALRY 330 (467)
T ss_pred HHHh
Confidence 8765
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=237.84 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=188.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.++++|+++||||++|||+++|++|+++|++|++++|+.++..+..+++... ....+.+|+++.++++++++++.+.+
T Consensus 3 ~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (239)
T PRK12828 3 HSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPAD--ALRIGGIDLVDPQAARRAVDEVNRQF 80 (239)
T ss_pred CCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhc--CceEEEeecCCHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999999988777666555433 35567799999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|++|||||......+.+.+.++|++.+++|+.|++.++++++|.|.+ ++.++||++||..+..+.++...|+++|+
T Consensus 81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~~iv~~sS~~~~~~~~~~~~y~~sk~ 159 (239)
T PRK12828 81 GRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTA-SGGGRIVNIGAGAALKAGPGMGAYAAAKA 159 (239)
T ss_pred CCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHh-cCCCEEEEECchHhccCCCCcchhHHHHH
Confidence 99999999999876666677789999999999999999999999999974 34689999999999988889999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
++..+++++++++.+.||++++|.||++.|++....... .....+..++|+|+.+++++.++.
T Consensus 160 a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~~~--------~~~~~~~~~~dva~~~~~~l~~~~ 222 (239)
T PRK12828 160 GVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADMPD--------ADFSRWVTPEQIAAVIAFLLSDEA 222 (239)
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcCCc--------hhhhcCCCHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999864321110 011235789999999999887543
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-25 Score=237.01 Aligned_cols=236 Identities=27% Similarity=0.434 Sum_probs=194.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++|+++||||++|||.+++++|+++|++|+++.|+ .+..+.+.+.+...+.++.++.+|+++.++++++++++.+.+
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERF 82 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHc
Confidence 3567899999999999999999999999998886665 445555666665556678889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+.+|++|||||......+.+.+.++|++.+++|+.+++.+++.++|++.+. +.+++|++||..+..+.++...|+.+|+
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~y~~sK~ 161 (249)
T PRK12825 83 GRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQ-RGGRIVNISSVAGLPGWPGRSNYAAAKA 161 (249)
T ss_pred CCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEECccccCCCCCCchHHHHHHH
Confidence 999999999998777777788999999999999999999999999998743 4689999999999988889999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
++.++++.++.++...|+++++|+||++.|++...................+..+++|+++.+.+++..+ ...+++..
T Consensus 162 ~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~-~~~~~g~~ 239 (249)
T PRK12825 162 GLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIEEAREAKDAETPLGRSGTPEDIARAVAFLCSDA-SDYITGQV 239 (249)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccchhHHhhhccCCCCCCcCHHHHHHHHHHHhCcc-ccCcCCCE
Confidence 9999999999999999999999999999999865432211111100112234678999999999987654 33444443
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=241.46 Aligned_cols=227 Identities=23% Similarity=0.384 Sum_probs=190.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+.+++|+++||||++|||+.+|++|+++|++|++++|+.+.++++.+..... ++.++.+|++++++++++++++.+.+
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA--KVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC--ceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999999988887776665433 56788999999999999999999999
Q ss_pred CCccEEEEccccC-CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+++|+||||||.. ....+...+.++|++++++|+.|++.+++.+++.|...+.+++|+++||.++..+.++...|+.+|
T Consensus 85 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~~~~~y~~~K 164 (264)
T PRK12829 85 GGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYPGRTPYAASK 164 (264)
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCCCCchhHHHH
Confidence 9999999999987 455667788999999999999999999999999887443337899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh----------hhhhhh-ccccCCCCCCHHHHHHHHHHHhc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR----------DVVDKY-DISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~----------~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
++++.++++++.++...++++++|.||++.|++....... ...... ......++.+++++|..+++++.
T Consensus 165 ~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~ 244 (264)
T PRK12829 165 WAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEKISLGRMVEPEDIAATALFLAS 244 (264)
T ss_pred HHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC
Confidence 9999999999999998999999999999999875322110 000000 11122347899999999998765
Q ss_pred C
Q psy4557 940 Q 940 (958)
Q Consensus 940 ~ 940 (958)
.
T Consensus 245 ~ 245 (264)
T PRK12829 245 P 245 (264)
T ss_pred c
Confidence 3
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=249.00 Aligned_cols=307 Identities=17% Similarity=0.167 Sum_probs=199.5
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|||||||||||+||+++|+++ +.+|++++|..........+. .. ....+++.++.+|+..+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~----~~------~~~~~~~~~~~~Dl~~~----- 67 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQR-GYTVKATVRDPNDPKKTEHLL----AL------DGAKERLHLFKANLLEE----- 67 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHC-CCEEEEEEcCCCchhhHHHHH----hc------cCCCCceEEEeccccCc-----
Confidence 468999999999999999999976 468999998654321111111 00 01125788999998742
Q ss_pred cHHHHHHHhcccCEEEEcccccCcc--cChHHHHhhhHHHHHHHHHhhccC-CCccEEEEecccc--cCCCC----CCCc
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLI--LPYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSI--YPSTS----ENFQ 469 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~--~~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v--~~~~~----~~~~ 469 (958)
+.+..+..++|+|||+||.+... .+...+..+||.||.+++++|.+. ++++|+|+||.++ |+... ....
T Consensus 68 --~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~ 145 (322)
T PLN02662 68 --GSFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVD 145 (322)
T ss_pred --chHHHHHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCC
Confidence 45777778999999999976432 223367789999999999998876 7889999999873 64321 1122
Q ss_pred ccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC--cCC
Q psy4557 470 EDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY--APD 546 (958)
Q Consensus 470 e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~--~P~ 546 (958)
|+.+. .........+.|+.||+.+|++++... +.|++++++||+++||+......+. ...++..+.. |. .|
T Consensus 146 E~~~~-~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~---~~~~~~~~~~-~~~~~~- 219 (322)
T PLN02662 146 ETWFS-DPAFCEESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNT---SAEAILNLIN-GAQTFP- 219 (322)
T ss_pred cccCC-ChhHhhcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCc---hHHHHHHHhc-CCccCC-
Confidence 22110 000001123589999999999998754 5699999999999999875332111 1122222222 22 23
Q ss_pred CCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccCCCchhHHHH
Q psy4557 547 IDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 547 ~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~ 626 (958)
+..++|++||++|++++.+...+.. +..||+. ..++++.|+++.+.+.- + ..+...|.. ...
T Consensus 220 -~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~~~-g~~~s~~e~~~~i~~~~-~--~~~~~~~~~---~~~--------- 281 (322)
T PLN02662 220 -NASYRWVDVRDVANAHIQAFEIPSA-SGRYCLV-ERVVHYSEVVKILHELY-P--TLQLPEKCA---DDK--------- 281 (322)
T ss_pred -CCCcCeEEHHHHHHHHHHHhcCcCc-CCcEEEe-CCCCCHHHHHHHHHHHC-C--CCCCCCCCC---Ccc---------
Confidence 3468999999999999998876533 3468887 47899999999998641 1 111111100 000
Q ss_pred hhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q psy4557 627 RNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLP 678 (958)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~ 678 (958)
+ . .....+|+++.+ ++|.+ |..-++-|+++++++.+.|++.
T Consensus 282 ----~-~-~~~~~~d~~k~~----~lg~~-~~~~~~~l~~~~~~~~~~~~~~ 322 (322)
T PLN02662 282 ----P-Y-VPTYQVSKEKAK----SLGIE-FIPLEVSLKDTVESLKEKGFLS 322 (322)
T ss_pred ----c-c-ccccccChHHHH----HhCCc-cccHHHHHHHHHHHHHHcCCCC
Confidence 0 0 011235666554 36776 3322568999999999999863
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-26 Score=243.71 Aligned_cols=219 Identities=22% Similarity=0.250 Sum_probs=176.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh-hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~-~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++++|+++||||++|||++++++|+++|++|++++|+. +.++.+.+++...+.++..+++|+++.+++.++++++.+.+
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999975 35666666666555667889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-----CCCCCChhh
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-----RPFAGLAVY 866 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-----~~~~~~~~Y 866 (958)
+++|++|||||..... .. .++..+++|+.|++.+++.+.|+|. ..|+||++||..+. .+.+.+..|
T Consensus 83 ~~~d~vi~~ag~~~~~---~~---~~~~~~~vn~~~~~~l~~~~~~~~~---~~~~iv~isS~~~~~~~~~~~~~~~~~Y 153 (248)
T PRK07806 83 GGLDALVLNASGGMES---GM---DEDYAMRLNRDAQRNLARAALPLMP---AGSRVVFVTSHQAHFIPTVKTMPEYEPV 153 (248)
T ss_pred CCCcEEEECCCCCCCC---CC---CcceeeEeeeHHHHHHHHHHHhhcc---CCceEEEEeCchhhcCccccCCccccHH
Confidence 9999999999874321 11 2567899999999999999999884 24799999996553 234567789
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC---ChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST---DRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~---~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
++||++++.++++++.|+++.||+||+|+||++.|++..... .+...... .....+..+|+|+|+++++++.++
T Consensus 154 ~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dva~~~~~l~~~~ 230 (248)
T PRK07806 154 ARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNRLNPGAIEAR-REAAGKLYTVSEFAAEVARAVTAP 230 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhhhccCCHHHHHHH-HhhhcccCCHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999998643211 11111111 112246789999999999988743
|
|
| >KOG0747|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-26 Score=232.26 Aligned_cols=309 Identities=20% Similarity=0.253 Sum_probs=214.6
Q ss_pred cCceEEeccccchHHHHHHHHhcCC-CCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDT-KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~-~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++|+||||.||+|||.+..+..+. +.+..|+..=.=- ...+.++. .....+-+++.+|+....+
T Consensus 6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~-s~~~~l~~-----------~~n~p~ykfv~~di~~~~~-- 71 (331)
T KOG0747|consen 6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYC-SNLKNLEP-----------VRNSPNYKFVEGDIADADL-- 71 (331)
T ss_pred cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccc-cccchhhh-----------hccCCCceEeeccccchHH--
Confidence 4789999999999999999998764 4566665431100 00111111 1235688999999975321
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcccChH---HHHhhhHHHHHHHHHhhccC-CCccEEEEecccccCCCCCCCccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLILPYN---ALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSIYPSTSENFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~---~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v~~~~~~~~~e~~~ 473 (958)
-.+..+..++|.|||.||..+...+|. ++...|+.||.+||+.++.. ++++|+|+||.+|||...+.....
T Consensus 72 ---~~~~~~~~~id~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~-- 146 (331)
T KOG0747|consen 72 ---VLYLFETEEIDTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVG-- 146 (331)
T ss_pred ---HHhhhccCchhhhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccc--
Confidence 223344578999999999988766554 45667999999999999865 789999999999999875543321
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCC---CCC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPD---IDW 549 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~---~~~ 549 (958)
....+.|.|+|+.||.+||++++... ++|+|+++.|.++||||.+.. .+.++++++...+.+-.|- ...
T Consensus 147 ---E~s~~nPtnpyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~----~klipkFi~l~~~~~~~~i~g~g~~ 219 (331)
T KOG0747|consen 147 ---EASLLNPTNPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYP----EKLIPKFIKLAMRGKEYPIHGDGLQ 219 (331)
T ss_pred ---ccccCCCCCchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcCh----HHHhHHHHHHHHhCCCcceecCccc
Confidence 22345688999999999999998764 679999999999999998743 3567788876666665552 235
Q ss_pred cCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHHHHhh
Q psy4557 550 YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQILRN 628 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~ 628 (958)
..+|++|+++++++-..... ...|++|||+...+++..++.+.+.+. ++.....+.+-|..-...+....
T Consensus 220 ~rs~l~veD~~ea~~~v~~K-g~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd-------- 290 (331)
T KOG0747|consen 220 TRSYLYVEDVSEAFKAVLEK-GELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYND-------- 290 (331)
T ss_pred ceeeEeHHHHHHHHHHHHhc-CCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCccc--------
Confidence 68999999999999888776 456999999999999999998877653 33333444444444332222110
Q ss_pred ccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 629 KGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 629 ~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
.....+..+ ++++|..+-..=++=|++.+++..+
T Consensus 291 -------~Ry~~~~eK----ik~LGw~~~~p~~eGLrktie~y~~ 324 (331)
T KOG0747|consen 291 -------LRYFLDDEK----IKKLGWRPTTPWEEGLRKTIEWYTK 324 (331)
T ss_pred -------ccccccHHH----HHhcCCcccCcHHHHHHHHHHHHHh
Confidence 011233333 3477765544445567777777653
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=238.53 Aligned_cols=199 Identities=20% Similarity=0.229 Sum_probs=155.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh-hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~-~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..++||+++|||||+|||+++|++|+++|++|++++|+.. .++. .. ... ...+.+|+++.+++.+ .
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~---~~--~~~-~~~~~~D~~~~~~~~~-------~ 76 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSES---ND--ESP-NEWIKWECGKEESLDK-------Q 76 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhh---hc--cCC-CeEEEeeCCCHHHHHH-------h
Confidence 4578999999999999999999999999999999999862 2221 11 111 2567899999987653 4
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCcEEEEecCccCcCCCCCChhhhH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR--RPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~--~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
++++|+||||||+... .+.+.++|++++++|+.|++++++.++|.|.+++ +++.|++.+|.++..+ ++.+.|++
T Consensus 77 ~~~iDilVnnAG~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~-~~~~~Y~a 152 (245)
T PRK12367 77 LASLDVLILNHGINPG---GRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQP-ALSPSYEI 152 (245)
T ss_pred cCCCCEEEECCccCCc---CCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCC-CCCchhHH
Confidence 6789999999998532 3568899999999999999999999999997531 2344555567666554 46778999
Q ss_pred HHHHHHHH---HHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 869 TKYFIEGI---SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 869 sKaa~~~l---~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
||+|+..+ .+.|+.|+.+.|++|++++||+++|+|.. ...++|+++|+.+++.+.....
T Consensus 153 SKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~~----------------~~~~~~~~vA~~i~~~~~~~~~ 214 (245)
T PRK12367 153 SKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSELNP----------------IGIMSADFVAKQILDQANLGLY 214 (245)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccccCc----------------cCCCCHHHHHHHHHHHHhcCCc
Confidence 99998644 45555566889999999999999998721 1247899999999998876654
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=233.21 Aligned_cols=228 Identities=32% Similarity=0.457 Sum_probs=189.7
Q ss_pred EEEEcCCchHHHHHHHHHHHcCCeEEEEecCh-hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~-~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
++|||+++|||..+|++|+++|++|++++|+. +.+++..+.+...+.++..+.+|++++++++++++.+.+.++++|++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL 80 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 58999999999999999999999999998875 56666667776666678889999999999999999999999999999
Q ss_pred EEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHHH
Q psy4557 798 VNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGIS 877 (958)
Q Consensus 798 InnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l~ 877 (958)
|||||......+.+.+.+.+++++++|+.+++.+++.+.+.+.+. ..+++|++||.++..+.++...|+++|+++..++
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~v~~sS~~~~~g~~~~~~y~~~k~a~~~~~ 159 (239)
T TIGR01830 81 VNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQ-RSGRIINISSVVGLMGNAGQANYAASKAGVIGFT 159 (239)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCeEEEEECCccccCCCCCCchhHHHHHHHHHHH
Confidence 999998766666778889999999999999999999999998643 4589999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhh-hccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 878 GALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDK-YDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 878 ~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~-~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
++|+.++...|+++++++||++.|++..... ...... .......+..++++++..+++++..+. ...++.
T Consensus 160 ~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~g~ 230 (239)
T TIGR01830 160 KSLAKELASRNITVNAVAPGFIDTDMTDKLS-EKVKKKILSQIPLGRFGTPEEVANAVAFLASDEA-SYITGQ 230 (239)
T ss_pred HHHHHHHhhcCeEEEEEEECCCCChhhhhcC-hHHHHHHHhcCCcCCCcCHHHHHHHHHHHhCccc-CCcCCC
Confidence 9999999999999999999999998754322 111111 111122346789999999998775443 334443
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=233.40 Aligned_cols=224 Identities=23% Similarity=0.373 Sum_probs=184.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++|+++||||++|||+.++++|+++|++|++++|+ .+.++++.+.+... ...+.++.+|+++.+++.++++.+.+.+
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999986 45566666555433 2357788999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|++|||||.....++.+.+.++|+.++++|+.|++.+++++.|.|.+ ..|.+++++|..+..+.++...|++||+
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 161 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRK--QRGAIVNITDIHAERPLKGYPVYCAAKA 161 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhh--CCeEEEEEeChhhcCCCCCchhHHHHHH
Confidence 99999999999876666777788999999999999999999999999863 3489999999888888889999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
+++.++++++.++.+ ++++++|.||++.|++............. .........+++|+++++++++..
T Consensus 162 ~~~~~~~~l~~~~~~-~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~ 230 (249)
T PRK09135 162 ALEMLTRSLALELAP-EVRVNAVAPGAILWPEDGNSFDEEARQAILARTPLKRIGTPEDIAEAVRFLLAD 230 (249)
T ss_pred HHHHHHHHHHHHHCC-CCeEEEEEeccccCccccccCCHHHHHHHHhcCCcCCCcCHHHHHHHHHHHcCc
Confidence 999999999999965 79999999999999985432221111111 111123356899999999887654
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-25 Score=236.72 Aligned_cols=225 Identities=29% Similarity=0.423 Sum_probs=190.8
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+++||||++|||+++|++|+++|++|++++|+.+..+++.+++...+.++..+.+|+++.++++++++++.+.++++|
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 57899999999999999999999999999999999888888877765556788899999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
++|+|||........+.+.+++++++++|+.|++.+++.+++.|.+ ...+++|++||..+..+.++...|+++|+++++
T Consensus 81 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-~~~~~~v~~ss~~~~~~~~~~~~y~~sk~a~~~ 159 (255)
T TIGR01963 81 ILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKK-QGWGRIINIASAHGLVASPFKSAYVAAKHGLIG 159 (255)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCeEEEEEcchhhcCCCCCCchhHHHHHHHHH
Confidence 9999999876666667788999999999999999999999999864 345799999999998888999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC----------hhhhh-hh-ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD----------RDVVD-KY-DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~----------~~~~~-~~-~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
++++++.++.+.||+|+.|+||++.|++...... ..... .. .........+++|+|+++++++.++
T Consensus 160 ~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~ 237 (255)
T TIGR01963 160 LTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLPGQPTKRFVTVDEVAETALFLASDA 237 (255)
T ss_pred HHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHHHHHccCccccCcCHHHHHHHHHHHcCcc
Confidence 9999999999899999999999999987422100 00000 00 0112234789999999999988764
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-25 Score=248.51 Aligned_cols=311 Identities=20% Similarity=0.188 Sum_probs=200.5
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||+||+++|++++...|.+..|... .....++... ....++.++.+|+..
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~Dl~d------- 62 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTY-AGNLMSLAPV-----------AQSERFAFEKVDICD------- 62 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCcc-ccchhhhhhc-----------ccCCceEEEECCCcC-------
Confidence 479999999999999999999875433434333211 1111111100 012367888899874
Q ss_pred HHHHHHHhc--ccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhcc---------CCCccEEEEecccccCCCC
Q psy4557 400 QDEYVSLSY--EIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFL---------NKIKSFHYVSTDSIYPSTS 465 (958)
Q Consensus 400 ~~~~~~l~~--~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~---------~~~k~~~~vST~~v~~~~~ 465 (958)
.+.+..+.. .+|+|||+||.+.... ....+.++|+.||.+|+++|.. .++++|+|+||.+|||...
T Consensus 63 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~ 142 (355)
T PRK10217 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLH 142 (355)
T ss_pred hHHHHHHHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCC
Confidence 345555554 4999999999875432 3456788999999999999975 2457999999999998532
Q ss_pred C---CCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH-hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh
Q psy4557 466 E---NFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA-GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL 541 (958)
Q Consensus 466 ~---~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a-~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~ 541 (958)
. ++.|+ .+..+.+.|+.||+.+|+++... .+.|++++|+||+++||+.... ..++..++..+..-
T Consensus 143 ~~~~~~~E~-------~~~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~----~~~~~~~~~~~~~~ 211 (355)
T PRK10217 143 STDDFFTET-------TPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFP----EKLIPLMILNALAG 211 (355)
T ss_pred CCCCCcCCC-------CCCCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCc----ccHHHHHHHHHhcC
Confidence 1 12222 22245678999999999999875 4679999999999999987532 23455555444432
Q ss_pred CCc---CCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH-cCCCccccChHHHHHHHhccC
Q psy4557 542 GYA---PDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT-YGYNIKTVPYEKWFHKLNKRE 617 (958)
Q Consensus 542 g~~---P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~~~~~v~~~eW~~~~~~~~ 617 (958)
+.+ ++.+...+|++||+++++++.+.... ..+.+||+.++.++++.++++.+.+ .|......|...|...
T Consensus 212 ~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~-~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~----- 285 (355)
T PRK10217 212 KPLPVYGNGQQIRDWLYVEDHARALYCVATTG-KVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYR----- 285 (355)
T ss_pred CCceEeCCCCeeeCcCcHHHHHHHHHHHHhcC-CCCCeEEeCCCCcccHHHHHHHHHHHhccccccccccccccc-----
Confidence 322 23456789999999999999887653 3468999999999999999998865 3432222222111100
Q ss_pred CCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHC
Q psy4557 618 LSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNS 674 (958)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~ 674 (958)
....+.. ..+. .......|+++.++.| |.++..--.+-|+.+++|+...
T Consensus 286 ---~~~~~~~-~~~~-~~~~~~~d~~k~~~~l---g~~p~~~l~e~l~~~~~~~~~~ 334 (355)
T PRK10217 286 ---DLITFVA-DRPG-HDLRYAIDASKIAREL---GWLPQETFESGMRKTVQWYLAN 334 (355)
T ss_pred ---ccceecC-CCCC-CCcccccCHHHHHHhc---CCCCcCcHHHHHHHHHHHHHhC
Confidence 0000000 0000 0011345667666555 6554433346788999998764
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-25 Score=233.68 Aligned_cols=201 Identities=18% Similarity=0.284 Sum_probs=166.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||++|||+++|++|+++|++|++++|+.+..+++.+ + .++.+..+|+++.++++++++.+.+ +++|+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-~----~~~~~~~~D~~d~~~~~~~~~~~~~--~~id~ 74 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA-L----PGVHIEKLDMNDPASLDQLLQRLQG--QRFDL 74 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh-c----cccceEEcCCCCHHHHHHHHHHhhc--CCCCE
Confidence 789999999999999999999999999999999877655432 1 2456778999999999999988753 58999
Q ss_pred EEEccccCCC--ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC---CCChhhhHHHH
Q psy4557 797 LVNNAGVMYF--TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF---AGLAVYTGTKY 871 (958)
Q Consensus 797 lInnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~---~~~~~Y~asKa 871 (958)
+|||||+... .++.+.+.++|++.+++|+.+++.+++.++|+|.+ ..|+|+++||..|..+. +++..|+++|+
T Consensus 75 vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~iv~~ss~~g~~~~~~~~~~~~Y~~sK~ 152 (225)
T PRK08177 75 LFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRP--GQGVLAFMSSQLGSVELPDGGEMPLYKASKA 152 (225)
T ss_pred EEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhh--cCCEEEEEccCccccccCCCCCccchHHHHH
Confidence 9999998643 35677889999999999999999999999999862 34899999998876543 35678999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
++++|+++++.|++++||+||+|+||+++|+|.... ...++++.+..++..+.+.
T Consensus 153 a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 207 (225)
T PRK08177 153 ALNSMTRSFVAELGEPTLTVLSMHPGWVKTDMGGDN---------------APLDVETSVKGLVEQIEAA 207 (225)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEcCCceecCCCCCC---------------CCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999985321 1145666666666655433
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=322.48 Aligned_cols=112 Identities=29% Similarity=0.519 Sum_probs=105.1
Q ss_pred CCccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHC
Q psy4557 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (958)
Q Consensus 9 ~~~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G 88 (958)
++...+++++|+++++++|+++|+++ .++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|
T Consensus 1999 ~~~~~~~~~~~~~~a~~~p~~~A~~~-~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aG 2077 (5163)
T PRK12316 1999 YPRGPGVHQRIAEQAARAPEAIAVVF-GDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAG 2077 (5163)
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEc-CCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhc
Confidence 33345799999999999999999986 46789999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 89 ~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
++||||||.+|.+|+++++++++++++|++.+.
T Consensus 2078 a~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~ 2110 (5163)
T PRK12316 2078 GAYVPLDPNYPAERLAYMLEDSGAALLLTQRHL 2110 (5163)
T ss_pred eEEeecCCCCCHHHHHHHHHhcCCCEEEeChhh
Confidence 999999999999999999999999999998654
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=233.23 Aligned_cols=309 Identities=21% Similarity=0.267 Sum_probs=212.7
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.+.|+|||||||||+||+++||++ +++|+..||...++...+.+.+. +...+|+.++.+||..
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~r-GY~V~gtVR~~~~~k~~~~L~~l----------~~a~~~l~l~~aDL~d------ 68 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSR-GYTVRGTVRDPEDEKKTEHLRKL----------EGAKERLKLFKADLLD------ 68 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhC-CCEEEEEEcCcchhhhHHHHHhc----------ccCcccceEEeccccc------
Confidence 468999999999999999999987 47899999988765443344331 2335689999999874
Q ss_pred cHHHHHHHhcccCEEEEcccccCcccC--hHHHHhhhHHHHHHHHHhhccCC-CccEEEEecccccCCCCCC------Cc
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLILP--YNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDSIYPSTSEN------FQ 469 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~~~--~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~v~~~~~~~------~~ 469 (958)
.+.|+...++||.|||.|+.+++... ..++....|.||.|+|+.|.+.+ +||++|.||.+........ ++
T Consensus 69 -~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvd 147 (327)
T KOG1502|consen 69 -EGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVD 147 (327)
T ss_pred -cchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccc
Confidence 47889999999999999999988554 33788999999999999998876 8999999997765432111 22
Q ss_pred ccc-cccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcCh-hHHHHHHHHHHHHhCCcCC
Q psy4557 470 EDY-TVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNL-VDLNLYILKAITRLGYAPD 546 (958)
Q Consensus 470 e~~-~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~-~d~~~~l~~~~~~~g~~P~ 546 (958)
|+. +..++.. ...+.|..||-+||+..++.. +.|++.+.+-|+.|.||.-...-|. ...+..++++... .+|.
T Consensus 148 E~~wsd~~~~~--~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~--~~~n 223 (327)
T KOG1502|consen 148 EESWSDLDFCR--CKKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAE--TYPN 223 (327)
T ss_pred cccCCcHHHHH--hhHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccc--cCCC
Confidence 211 1111101 123689999999999988754 5689999999999999987654333 2233344443322 2222
Q ss_pred CCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccCCCchhHHHH
Q psy4557 547 IDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 547 ~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~ 626 (958)
....++.|++||.+.+.+...+.+. ..|++.++. .+++|+++.+++. +|.-.+|-. .. +...
T Consensus 224 --~~~~~VdVrDVA~AHv~a~E~~~a~-GRyic~~~~-~~~~ei~~~l~~~-~P~~~ip~~------~~-~~~~------ 285 (327)
T KOG1502|consen 224 --FWLAFVDVRDVALAHVLALEKPSAK-GRYICVGEV-VSIKEIADILREL-FPDYPIPKK------NA-EEHE------ 285 (327)
T ss_pred --CceeeEeHHHHHHHHHHHHcCcccC-ceEEEecCc-ccHHHHHHHHHHh-CCCCCCCCC------CC-cccc------
Confidence 2345899999999999998877654 678888755 4499999999875 221113200 00 0000
Q ss_pred hhccccccccCcccccHHHHHHHhhCC-CCCCCCCHHHHHHHHHHHHHCCCCC
Q psy4557 627 RNKGKEYLTVNNSYCQRNTLALLKSCD-ETYPETNDHTVRQFLDNLRNSNLLP 678 (958)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~t~~~L~~~~-~~~p~~~~~~~~~~~~~~~~~g~l~ 678 (958)
.. .....+++.++ +.+| +++-++ .+.+...+..|.+.|+++
T Consensus 286 ----~~--~~~~~~~~~k~----k~lg~~~~~~l-~e~~~dt~~sl~~~~~l~ 327 (327)
T KOG1502|consen 286 ----GF--LTSFKVSSEKL----KSLGGFKFRPL-EETLSDTVESLREKGLLL 327 (327)
T ss_pred ----cc--ccccccccHHH----HhcccceecCh-HHHHHHHHHHHHHhcCCC
Confidence 00 01113455544 5566 455454 667888899999999874
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=319.19 Aligned_cols=109 Identities=30% Similarity=0.537 Sum_probs=103.6
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
..+++++|+++++++|+++|+++ +++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|++|
T Consensus 1130 ~~~l~~~~~~~a~~~p~~~Al~~-~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~ 1208 (4334)
T PRK05691 1130 QAWLPELLNEQARQTPERIALVW-DGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAY 1208 (4334)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEE-CCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 45799999999999999999986 45789999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
|||||.+|.+|+.+++++++++++|++..+
T Consensus 1209 vpld~~~p~~rl~~il~~~~~~~vi~~~~~ 1238 (4334)
T PRK05691 1209 VPLDPDYPAERLAYMLADSGVELLLTQSHL 1238 (4334)
T ss_pred EecCcCChHHHHHHHHHhcCCCEEEecchh
Confidence 999999999999999999999999997654
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=252.64 Aligned_cols=263 Identities=12% Similarity=0.042 Sum_probs=175.5
Q ss_pred ccccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChh-h-------------HHHHHHHHHHHhccccccccccC
Q psy4557 316 KLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNK-T-------------LLQRLEDIMLKYHMSLDLNNYTD 381 (958)
Q Consensus 316 ~~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~-~-------------~~~rl~~~~~~~~~~~~~~~~~~ 381 (958)
..+.++|||||||||||+||+++|++++ .+|+++.|..... . ..+++.... . ....
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~--------~~~~ 113 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWK-E--------VSGK 113 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEeccccccccccccccccccccchHHHHHHHH-H--------hhCC
Confidence 3467899999999999999999999764 6788765421100 0 011121100 0 0124
Q ss_pred ceEEecccCCCCCCCCCcHHHHHHHhc--ccCEEEEcccccCcccC------hHHHHhhhHHHHHHHHHhhccCCCc-cE
Q psy4557 382 RLILVKSDLSLEMLGLKNQDEYVSLSY--EIDMIIHAAAFVNLILP------YNALYKSNVLATKNLIEFSFLNKIK-SF 452 (958)
Q Consensus 382 ri~~v~gDl~~~~lGL~~~~~~~~l~~--~vd~IiH~AA~v~~~~~------~~~~~~~NV~gt~~ll~~a~~~~~k-~~ 452 (958)
++.++.+|++. .+.+..+.+ ++|+|||+||....... .....++|+.||.+|++.|+..+++ +|
T Consensus 114 ~v~~v~~Dl~d-------~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~ 186 (442)
T PLN02572 114 EIELYVGDICD-------FEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHL 186 (442)
T ss_pred cceEEECCCCC-------HHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 68899999873 345555554 58999999987543211 1234578999999999999887775 89
Q ss_pred EEEecccccCCCCCCCccccc-------ccCcCCCCCCCCChhHHHHHHHHHHHHH-hhCCCCEEEEecCceeccCCCCC
Q psy4557 453 HYVSTDSIYPSTSENFQEDYT-------VADFDDFMTTTSGYGQSKIVSEYLVLNA-GQMGLPVSIVRCGNIGGSLEFKN 524 (958)
Q Consensus 453 ~~vST~~v~~~~~~~~~e~~~-------~~~~~~~~~~~~gY~~SK~~aE~lv~~a-~~~glp~~I~R~g~i~G~~~~g~ 524 (958)
+|+||.+|||....+..|... ....+.+..+.+.|+.||+++|.++..+ .+.|++++++||+++||+.+...
T Consensus 187 V~~SS~~vYG~~~~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~ 266 (442)
T PLN02572 187 VKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDET 266 (442)
T ss_pred EEEecceecCCCCCCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCccc
Confidence 999999999854322222210 0000123456789999999999999875 45699999999999999976432
Q ss_pred cC-------------hhHHHHHHHHHHHHhCC----cCCCCCcCCcccHHHHHHHHHHHhcCcCCCC--ceEEecCCCCC
Q psy4557 525 WN-------------LVDLNLYILKAITRLGY----APDIDWYLEFTPVDFLTKSLVQLTTNVNNAN--KIYNFINTNPI 585 (958)
Q Consensus 525 ~n-------------~~d~~~~l~~~~~~~g~----~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~--~v~h~~n~~~~ 585 (958)
.. ....+..++..+.. |. ..+.+...||++||+++++++.+.......+ .+||+.. ..+
T Consensus 267 ~~~~~li~~~~~~~~~~~~i~~~~~~~~~-g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs-~~~ 344 (442)
T PLN02572 267 MMDEELINRLDYDGVFGTALNRFCVQAAV-GHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFT-EQF 344 (442)
T ss_pred ccccccccccCcccchhhHHHHHHHHHhc-CCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCC-Cce
Confidence 10 01223333333222 32 1233456899999999999998876542223 5899976 679
Q ss_pred CHHHHHHHHHHc
Q psy4557 586 HIKTLVSVLNTY 597 (958)
Q Consensus 586 ~~~~l~~~l~~~ 597 (958)
++.|+++.+.+.
T Consensus 345 si~el~~~i~~~ 356 (442)
T PLN02572 345 SVNELAKLVTKA 356 (442)
T ss_pred eHHHHHHHHHHH
Confidence 999999999763
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=251.04 Aligned_cols=249 Identities=16% Similarity=0.194 Sum_probs=176.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||+||++.|+++ +.+|+++.|..... +. .....+.++.+|+..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-G~~V~~v~r~~~~~-----~~-------------~~~~~~~~~~~Dl~d----- 75 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-GHYIIASDWKKNEH-----MS-------------EDMFCHEFHLVDLRV----- 75 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-CCEEEEEEeccccc-----cc-------------cccccceEEECCCCC-----
Confidence 4578999999999999999999876 46899998853210 00 000124567788763
Q ss_pred CcHHHHHHHhcccCEEEEcccccC---cc-cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-----CC
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVN---LI-LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-----NF 468 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~---~~-~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-----~~ 468 (958)
.+.+..+..++|+|||+||.+. +. ..+..+...|+.||.+|++.|+..++++|+|+||.+||+.... ++
T Consensus 76 --~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~ 153 (370)
T PLN02695 76 --MENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSL 153 (370)
T ss_pred --HHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCc
Confidence 3556666678999999999763 21 2234456789999999999999888899999999999986422 12
Q ss_pred cccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh----CC
Q psy4557 469 QEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL----GY 543 (958)
Q Consensus 469 ~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~----g~ 543 (958)
.|+. ..+..+.+.|+.||..+|+++.... +.|++++|+||++|||+.........-....+++.+... ..
T Consensus 154 ~E~~-----~~p~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 228 (370)
T PLN02695 154 KESD-----AWPAEPQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEM 228 (370)
T ss_pred Cccc-----CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEE
Confidence 2211 1133567899999999999998754 569999999999999986432111111122333333322 22
Q ss_pred cCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH-cCC
Q psy4557 544 APDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT-YGY 599 (958)
Q Consensus 544 ~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~ 599 (958)
.++.+...+|++||+++++++.+.... .+.+||+.++.++++.++.+.+.+ .|.
T Consensus 229 ~g~g~~~r~~i~v~D~a~ai~~~~~~~--~~~~~nv~~~~~~s~~el~~~i~~~~g~ 283 (370)
T PLN02695 229 WGDGKQTRSFTFIDECVEGVLRLTKSD--FREPVNIGSDEMVSMNEMAEIALSFENK 283 (370)
T ss_pred eCCCCeEEeEEeHHHHHHHHHHHHhcc--CCCceEecCCCceeHHHHHHHHHHHhCC
Confidence 234456789999999999999877553 357899999999999999998865 454
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=229.93 Aligned_cols=224 Identities=21% Similarity=0.248 Sum_probs=183.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||.++++.|+++|++|++++|+.++++++.+.+... +.+..+++|+++.+++.++++++...++
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 368999999999999999999999999999999999998888776666543 3578889999999999999999988899
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-CCCCCChhhhHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-RPFAGLAVYTGTKY 871 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-~~~~~~~~Y~asKa 871 (958)
++|.+|+|+|......+. +.+.++.++++|+.+++.+++.++|.|. ..|++|++||..+. .+.+....|++||+
T Consensus 81 ~id~ii~~ag~~~~~~~~--~~~~~~~~~~~n~~~~~~~~~~~~~~~~---~~~~iv~~ss~~~~~~~~~~~~~Y~~sK~ 155 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVE--EFSGLEEMLTNHIKIPLYAVNASLRFLK---EGSSIVLVSSMSGIYKASPDQLSYAVAKA 155 (238)
T ss_pred CCCEEEEcCCCcCCCchH--HHHHHHHHHHHhchHHHHHHHHHHHHHh---cCCEEEEEecchhcccCCCCchHHHHHHH
Confidence 999999999976543333 3488999999999999999999999885 24899999998874 35677888999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
++..++++++.++...||++++|+||++.|++.... ..... .....+..+++++++.+++++..+. ..+.+
T Consensus 156 ~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~~----~~~~~-~~~~~~~~~~~~va~~~~~~~~~~~-~~~~g 226 (238)
T PRK05786 156 GLAKAVEILASELLGRGIRVNGIAPTTISGDFEPER----NWKKL-RKLGDDMAPPEDFAKVIIWLLTDEA-DWVDG 226 (238)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCchh----hhhhh-ccccCCCCCHHHHHHHHHHHhcccc-cCccC
Confidence 999999999999999999999999999999874221 01111 0112245789999999999886533 34444
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-24 Score=238.46 Aligned_cols=308 Identities=18% Similarity=0.232 Sum_probs=200.2
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+++|||||||||||+||+++|+++ +.+|++++|...... ++.+..... ....+++++.+|++.
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~---~~~~~~~~~-------~~~~~~~~~~~Dl~~------ 67 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLR-GYTVKATVRDLTDRK---KTEHLLALD-------GAKERLKLFKADLLE------ 67 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCCcchH---HHHHHHhcc-------CCCCceEEEecCCCC------
Confidence 468999999999999999999976 468999998654322 222111100 112478899999874
Q ss_pred cHHHHHHHhcccCEEEEcccccCcc--cChHHHHhhhHHHHHHHHHhhccC-CCccEEEEeccccc--CCCC----CCCc
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLI--LPYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSIY--PSTS----ENFQ 469 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~--~~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v~--~~~~----~~~~ 469 (958)
.+.+..+...+|+|||+|+.+.+. .+...+..+|+.||.++++.|... ++++|+|+||.++| +... ..+.
T Consensus 68 -~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~ 146 (322)
T PLN02986 68 -ESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVD 146 (322)
T ss_pred -cchHHHHHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcC
Confidence 356777778899999999986542 223356789999999999999874 67899999998764 3211 1122
Q ss_pred ccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCC
Q psy4557 470 EDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDID 548 (958)
Q Consensus 470 e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~ 548 (958)
|+... .......+.+.|+.||+.+|++++.+. +.|++++++||+++||+......+. ...++..+.. |..+-..
T Consensus 147 E~~~~-~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~---~~~~~~~~~~-g~~~~~~ 221 (322)
T PLN02986 147 ETFFS-DPSLCRETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNF---SVELIVDFIN-GKNLFNN 221 (322)
T ss_pred cccCC-ChHHhhccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCc---cHHHHHHHHc-CCCCCCC
Confidence 22110 000001235789999999999998764 4699999999999999975432221 1122222221 2211113
Q ss_pred CcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccCCCchhHHHHhh
Q psy4557 549 WYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQILRN 628 (958)
Q Consensus 549 ~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~ 628 (958)
...+|++|+++|++++.+...+.. +..||+.. .++++.++++.+.+.--.+ .++.. .... .
T Consensus 222 ~~~~~v~v~Dva~a~~~al~~~~~-~~~yni~~-~~~s~~e~~~~i~~~~~~~-~~~~~-------~~~~-~-------- 282 (322)
T PLN02986 222 RFYRFVDVRDVALAHIKALETPSA-NGRYIIDG-PIMSVNDIIDILRELFPDL-CIADT-------NEES-E-------- 282 (322)
T ss_pred cCcceeEHHHHHHHHHHHhcCccc-CCcEEEec-CCCCHHHHHHHHHHHCCCC-CCCCC-------Cccc-c--------
Confidence 446899999999999998876544 34899954 6899999999998751111 11110 0000 0
Q ss_pred ccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy4557 629 KGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLL 677 (958)
Q Consensus 629 ~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l 677 (958)
.. .....+|+++ ++.+|.++.++ ++-|+..++++.+.|++
T Consensus 283 --~~--~~~~~~d~~~----~~~lg~~~~~l-~e~~~~~~~~~~~~~~~ 322 (322)
T PLN02986 283 --MN--EMICKVCVEK----VKNLGVEFTPM-KSSLRDTILSLKEKCLL 322 (322)
T ss_pred --cc--ccCCccCHHH----HHHcCCcccCH-HHHHHHHHHHHHHcCCC
Confidence 00 0112244443 45688887654 56677888899988875
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=233.75 Aligned_cols=220 Identities=26% Similarity=0.353 Sum_probs=182.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc-CCcc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL-GHID 795 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g~iD 795 (958)
|+++||||++|||+++|+.|+++|++|++++|+.++++.+.+ . .+..+++|+++.+++.++++.+.... +++|
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~----~--~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~ 76 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS----L--GFTGILLDLDDPESVERAADEVIALTDNRLY 76 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh----C--CCeEEEeecCCHHHHHHHHHHHHHhcCCCCe
Confidence 789999999999999999999999999999999887765532 1 25678899999999999999887743 7899
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
++|||||.....++.+.+.++|++++++|+.|++.+++.+++.|.+ .+.|+||++||.++..+.++.+.|++||++++.
T Consensus 77 ~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~~~~~ 155 (256)
T PRK08017 77 GLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLP-HGEGRIVMTSSVMGLISTPGRGAYAASKYALEA 155 (256)
T ss_pred EEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhh-cCCCEEEEEcCcccccCCCCccHHHHHHHHHHH
Confidence 9999999876667778899999999999999999999999999974 345899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccc--cCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDIS--KAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~--~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
++++++.++...|+++++|+||++.|++................ .......|+|+++.++.++..+..
T Consensus 156 ~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~ 225 (256)
T PRK08017 156 WSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVPKLRHALESPKP 225 (256)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCcccchhhcccchhhccchhhhHHHhhcCCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999976542111100000000 011247899999999998876653
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=243.04 Aligned_cols=312 Identities=18% Similarity=0.201 Sum_probs=198.2
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|||||||||||+||+++|+++ +.+|++++|...... .+...... .....++.++.+|+..
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~-G~~V~~~~r~~~~~~---~~~~~~~~-------~~~~~~~~~v~~Dl~d------ 67 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLER-GYTVRATVRDPANVK---KVKHLLDL-------PGATTRLTLWKADLAV------ 67 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHC-CCEEEEEEcCcchhH---HHHHHHhc-------cCCCCceEEEEecCCC------
Confidence 468999999999999999999976 468999888643221 22111110 0112468889999874
Q ss_pred cHHHHHHHhcccCEEEEcccccCccc--ChHHHHhhhHHHHHHHHHhhccCC-CccEEEEecccccCCCCC--C-Ccccc
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLIL--PYNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDSIYPSTSE--N-FQEDY 472 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~~--~~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~v~~~~~~--~-~~e~~ 472 (958)
.+.+..+...+|+|||+|+...... +.....++|+.||.+|+++|...+ +++|+|+||.++|+.... + +.|+.
T Consensus 68 -~~~~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~ 146 (351)
T PLN02650 68 -EGSFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDC 146 (351)
T ss_pred -hhhHHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCccc
Confidence 2456667778999999999765322 223567899999999999998765 689999999987754211 1 22221
Q ss_pred ccc-CcC-CCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC--CC
Q psy4557 473 TVA-DFD-DFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP--DI 547 (958)
Q Consensus 473 ~~~-~~~-~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P--~~ 547 (958)
... +.. ....+.+.|+.||+.+|+++..+. ++|++++++||+++||+..... ....++..+. ...|..+ ..
T Consensus 147 ~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~-~~~~~~~~~~---~~~~~~~~~~~ 222 (351)
T PLN02650 147 WSDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTS-MPPSLITALS---LITGNEAHYSI 222 (351)
T ss_pred CCchhhhhccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCC-CCccHHHHHH---HhcCCccccCc
Confidence 000 000 111234689999999999998754 5699999999999999975432 1122222111 1112111 11
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccCCCchhHHHHh
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQILR 627 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~ 627 (958)
....+|++||++|++++.+...+.. +..| ++...++++.++++.+.+.--.+. ++. +. ....
T Consensus 223 ~~~r~~v~V~Dva~a~~~~l~~~~~-~~~~-i~~~~~~s~~el~~~i~~~~~~~~-~~~--~~---~~~~---------- 284 (351)
T PLN02650 223 IKQGQFVHLDDLCNAHIFLFEHPAA-EGRY-ICSSHDATIHDLAKMLREKYPEYN-IPA--RF---PGID---------- 284 (351)
T ss_pred CCCcceeeHHHHHHHHHHHhcCcCc-CceE-EecCCCcCHHHHHHHHHHhCcccC-CCC--CC---CCcC----------
Confidence 2346999999999999998865433 3478 455578999999999976311110 110 00 0000
Q ss_pred hccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q psy4557 628 NKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPN 679 (958)
Q Consensus 628 ~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~~ 679 (958)
... ....+|.++ ++.+|....---++-|+.+++|+.+.|.++.
T Consensus 285 -~~~----~~~~~d~~k----~~~lG~~p~~~l~egl~~~i~~~~~~~~~~~ 327 (351)
T PLN02650 285 -EDL----KSVEFSSKK----LTDLGFTFKYSLEDMFDGAIETCREKGLIPL 327 (351)
T ss_pred -ccc----ccccCChHH----HHHhCCCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence 000 112234433 2456766442234679999999999999955
|
|
| >KOG1204|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-26 Score=226.89 Aligned_cols=235 Identities=20% Similarity=0.231 Sum_probs=180.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.+|++++||+|+|||..++..+.+++-..+..+++....+ +.......+........|++...-..++++..+.++|..
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~-~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~gkr 83 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE-LEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKKGGKR 83 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc-ccceEEEecCCcceechHHHHHHHHHHHHhhhhhcCCce
Confidence 6889999999999999999988888755444433322222 211112223333344568887777888999999999999
Q ss_pred cEEEEccccCCCc---cccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 795 DILVNNAGVMYFT---LMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 795 DilInnAG~~~~~---~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|||||..... .....+.++|++.+++|+++.+.+.+.++|.+.++...|.|||+||.++..|+++|++||++|+
T Consensus 84 ~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p~~~wa~yc~~Ka 163 (253)
T KOG1204|consen 84 DIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFSSWAAYCSSKA 163 (253)
T ss_pred eEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhccccHHHHhhhhHH
Confidence 9999999997542 2346789999999999999999999999999974433699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-----CChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-----TDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-----~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
|.++|.+.||.|-. ++++|.+++||.|+|+|.... .+++....+. ......+.+|...|+.+.+++.... +
T Consensus 164 Ar~m~f~~lA~EEp-~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~~~~ll~~~~~a~~l~~L~e~~~--f 240 (253)
T KOG1204|consen 164 ARNMYFMVLASEEP-FDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKESGQLLDPQVTAKVLAKLLEKGD--F 240 (253)
T ss_pred HHHHHHHHHhhcCc-cceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHhcCCcCChhhHHHHHHHHHHhcC--c
Confidence 99999999999976 899999999999999996531 1222222222 2234467899999999999776443 7
Q ss_pred ccceEecC
Q psy4557 946 VNSILIEP 953 (958)
Q Consensus 946 i~~~~i~p 953 (958)
.+|..|+=
T Consensus 241 ~sG~~vdy 248 (253)
T KOG1204|consen 241 VSGQHVDY 248 (253)
T ss_pred cccccccc
Confidence 77877763
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=242.37 Aligned_cols=312 Identities=20% Similarity=0.220 Sum_probs=201.0
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||+||+++|++++...|+++.|..... ...++... . ...+++++.+|+.. .
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~~~~~~------~-----~~~~~~~~~~Dl~d-------~ 62 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAG-NLESLADV------S-----DSERYVFEHADICD-------R 62 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccc-hHHHHHhc------c-----cCCceEEEEecCCC-------H
Confidence 5999999999999999999987655566554432111 11111110 0 02467788999874 3
Q ss_pred HHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccC---------CCccEEEEecccccCCCCC
Q psy4557 401 DEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLN---------KIKSFHYVSTDSIYPSTSE 466 (958)
Q Consensus 401 ~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~---------~~k~~~~vST~~v~~~~~~ 466 (958)
+.+..+.. .+|+|||+||.++.. ...+.+..+|+.||.++++.|... +.++|+|+||.++|+....
T Consensus 63 ~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~ 142 (352)
T PRK10084 63 AELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPH 142 (352)
T ss_pred HHHHHHHHhcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCc
Confidence 45555543 589999999987542 234678899999999999999752 3568999999999985311
Q ss_pred --CCc--ccccccCcCCCCCCCCChhHHHHHHHHHHHHH-hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh
Q psy4557 467 --NFQ--EDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA-GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL 541 (958)
Q Consensus 467 --~~~--e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a-~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~ 541 (958)
... +..+...++.+..+.+.|+.||+.+|+++... .+.|++++++|++++||+.... ..++..++..+..-
T Consensus 143 ~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~----~~~~~~~~~~~~~~ 218 (352)
T PRK10084 143 PDEVENSEELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFP----EKLIPLVILNALEG 218 (352)
T ss_pred cccccccccCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCc----cchHHHHHHHHhcC
Confidence 000 00011112233456789999999999999875 4569999999999999987421 12345555555443
Q ss_pred CCcC---CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCcc-ccChHHHHHHHhcc
Q psy4557 542 GYAP---DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIK-TVPYEKWFHKLNKR 616 (958)
Q Consensus 542 g~~P---~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~-~v~~~eW~~~~~~~ 616 (958)
+.++ +.+...+|++||++++++..+.... ..+.+||+.+++++++.++++.+.+. |.... ..++..++......
T Consensus 219 ~~~~~~~~g~~~~~~v~v~D~a~a~~~~l~~~-~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~ 297 (352)
T PRK10084 219 KPLPIYGKGDQIRDWLYVEDHARALYKVVTEG-KAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADR 297 (352)
T ss_pred CCeEEeCCCCeEEeeEEHHHHHHHHHHHHhcC-CCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccC
Confidence 3323 3345789999999999998877543 34689999999999999999988643 43211 11221111100000
Q ss_pred CCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHC
Q psy4557 617 ELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNS 674 (958)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~ 674 (958)
. .. .....+|+++.++.| |.++..--.+.|+++++|+.+.
T Consensus 298 ~-----------~~----~~~~~~d~~k~~~~l---g~~p~~~l~~~l~~~~~~~~~~ 337 (352)
T PRK10084 298 P-----------GH----DRRYAIDASKISREL---GWKPQETFESGIRKTVEWYLAN 337 (352)
T ss_pred C-----------CC----CceeeeCHHHHHHHc---CCCCcCCHHHHHHHHHHHHHhC
Confidence 0 00 012245777666555 6654333346788888888763
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=286.55 Aligned_cols=108 Identities=31% Similarity=0.529 Sum_probs=102.8
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.++|.++++++|+++|+++ +++.+||+||+++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|++||
T Consensus 458 ~~l~~~~~~~~~~~p~~~Al~~-~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~v 536 (1296)
T PRK10252 458 TTLSALVAQQAAKTPDAPALAD-ARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWL 536 (1296)
T ss_pred CCHHHHHHHHHHhCCCCeEEEc-CCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 5789999999999999999986 467899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
||||.+|.+|+.+++++++++++|++...
T Consensus 537 pld~~~p~~~~~~~l~~~~~~~~i~~~~~ 565 (1296)
T PRK10252 537 PLDTGYPDDRLKMMLEDARPSLLITTADQ 565 (1296)
T ss_pred ecCccCHHHHHHHHHHhCCCCEEEECcch
Confidence 99999999999999999999999997643
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-24 Score=228.80 Aligned_cols=204 Identities=26% Similarity=0.375 Sum_probs=175.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++|+++||||++|||+++|++|+++|+ +|++++|+.+++++ .+..+.++.+|+++.++++++++. +
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~----~ 71 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------LGPRVVPLQLDVTDPASVAAAAEA----A 71 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------cCCceEEEEecCCCHHHHHHHHHh----c
Confidence 36889999999999999999999999999 99999999876554 234678889999999998776654 5
Q ss_pred CCccEEEEcccc-CCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~-~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+++|++|||||. ....++.+.+.+.|++.+++|+.+++.+++.++|.|.+ ++.+++|++||..+..+.++...|+++|
T Consensus 72 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~~v~~sS~~~~~~~~~~~~y~~sK 150 (238)
T PRK08264 72 SDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAA-NGGGAIVNVLSVLSWVNFPNLGTYSASK 150 (238)
T ss_pred CCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCEEEEEcChhhccCCCCchHhHHHH
Confidence 789999999998 55566788899999999999999999999999999874 3468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
++++++++.++.++.+.||+++++.||.++|++..... .+..++++++..++..+...
T Consensus 151 ~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~~~~-------------~~~~~~~~~a~~~~~~~~~~ 208 (238)
T PRK08264 151 AAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAGLD-------------APKASPADVARQILDALEAG 208 (238)
T ss_pred HHHHHHHHHHHHHhhhcCeEEEEEeCCcccccccccCC-------------cCCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999853211 12466788888888766544
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=214.56 Aligned_cols=231 Identities=21% Similarity=0.229 Sum_probs=191.2
Q ss_pred CCCCCEEEEEcC--CchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGS--SSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGa--s~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.|+||+++|+|- .++|++.||+.|+++|+.++.+..+. ++++-.+++.+.-+...+++|||++.++++++|+++.++
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~ 81 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKK 81 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHh
Confidence 579999999994 47999999999999999999988775 555555555444445678999999999999999999999
Q ss_pred cCCccEEEEccccCC----CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhh
Q psy4557 791 LGHIDILVNNAGVMY----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVY 866 (958)
Q Consensus 791 ~g~iDilInnAG~~~----~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y 866 (958)
+|++|+|||+-|... .+.+.+++.|.|...+++..++...+.|++.|.|. .+|+||.++-..+.+..|++.+.
T Consensus 82 ~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~---~ggSiltLtYlgs~r~vPnYNvM 158 (259)
T COG0623 82 WGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMN---NGGSILTLTYLGSERVVPNYNVM 158 (259)
T ss_pred hCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcC---CCCcEEEEEeccceeecCCCchh
Confidence 999999999999875 35677899999999999999999999999999884 46999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhcc-ccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYDI-SKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~~-~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
+.+|+++++-+|.||.+++++|||||+|+-|+|+|--...-.+ ....+..+. .+..+-.++|||....+|+++ +=+.
T Consensus 159 GvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl~r~vt~eeVG~tA~fLlS-dLss 237 (259)
T COG0623 159 GVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPLRRNVTIEEVGNTAAFLLS-DLSS 237 (259)
T ss_pred HHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCccCCCCHHHhhhhHHHHhc-chhc
Confidence 9999999999999999999999999999999999954332221 111122222 233456899999999999776 4444
Q ss_pred cccc
Q psy4557 945 AVNS 948 (958)
Q Consensus 945 ~i~~ 948 (958)
.++|
T Consensus 238 giTG 241 (259)
T COG0623 238 GITG 241 (259)
T ss_pred cccc
Confidence 4444
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-24 Score=239.53 Aligned_cols=309 Identities=15% Similarity=0.158 Sum_probs=197.1
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++|||||||||||+||+++|++++ .+|++++|..........+. .. .. .+++.++.+|++.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~----~~------~~-~~~~~~~~~Dl~d----- 70 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTVRDPENQKKIAHLR----AL------QE-LGDLKIFGADLTD----- 70 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHHHHH----hc------CC-CCceEEEEcCCCC-----
Confidence 35689999999999999999999864 68888888654221111110 00 01 1368889999874
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcc--cChHHHHhhhHHHHHHHHHhhccC-CCccEEEEecccccCCCC-----CCCc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLI--LPYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSIYPSTS-----ENFQ 469 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~--~~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v~~~~~-----~~~~ 469 (958)
.+.+..+..++|+|||+||.+++. .+...+..+|+.|+.+|++.|.+. ++++|+|+||.++|+... .+..
T Consensus 71 --~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~ 148 (338)
T PLN00198 71 --EESFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMN 148 (338)
T ss_pred --hHHHHHHHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceec
Confidence 355666677899999999976543 223356789999999999998765 578999999999997431 1122
Q ss_pred cccccc--CcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC---
Q psy4557 470 EDYTVA--DFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY--- 543 (958)
Q Consensus 470 e~~~~~--~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~--- 543 (958)
|+.... .......+.+.|+.||+++|++++... +.|++++++||++|||+...+... .++. ++..+.. |.
T Consensus 149 E~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~--~~~~-~~~~~~~-~~~~~ 224 (338)
T PLN00198 149 EKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIP--SSLS-LAMSLIT-GNEFL 224 (338)
T ss_pred cccCCchhhhhhcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCC--CcHH-HHHHHHc-CCccc
Confidence 221000 000112356789999999999998754 469999999999999998654221 1121 1111111 11
Q ss_pred ------cCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhcc
Q psy4557 544 ------APDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKR 616 (958)
Q Consensus 544 ------~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~ 616 (958)
.+..+...+|++||+++++++.++..... +..|+ .+...+++.++++.+.+. +. . .++.. + .
T Consensus 225 ~~g~~~~~~~~~~~~~i~V~D~a~a~~~~~~~~~~-~~~~~-~~~~~~s~~el~~~i~~~~~~-~-~~~~~-~-~----- 293 (338)
T PLN00198 225 INGLKGMQMLSGSISITHVEDVCRAHIFLAEKESA-SGRYI-CCAANTSVPELAKFLIKRYPQ-Y-QVPTD-F-G----- 293 (338)
T ss_pred cccccccccccCCcceeEHHHHHHHHHHHhhCcCc-CCcEE-EecCCCCHHHHHHHHHHHCCC-C-CCCcc-c-c-----
Confidence 11112246999999999999988765432 34674 445778999999998753 21 1 11110 0 0
Q ss_pred CCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q psy4557 617 ELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLP 678 (958)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~ 678 (958)
+.+ . ......|+++.++ .|.++..-=++-|+.+++|+.+.|++.
T Consensus 294 --~~~----------~--~~~~~~~~~k~~~----~G~~p~~~l~~gi~~~~~~~~~~~~~~ 337 (338)
T PLN00198 294 --DFP----------S--KAKLIISSEKLIS----EGFSFEYGIEEIYDQTVEYFKAKGLLK 337 (338)
T ss_pred --ccC----------C--CCccccChHHHHh----CCceecCcHHHHHHHHHHHHHHcCCCC
Confidence 000 0 0112245544433 476543223467999999999999874
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=262.28 Aligned_cols=327 Identities=16% Similarity=0.138 Sum_probs=208.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++|||||||||+|+||+++|+++.+.+|++++|..... .++ . . .++++++.||+..+
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~---~~~----------~--~--~~~~~~~~gDl~d~---- 372 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAI---SRF----------L--G--HPRFHFVEGDISIH---- 372 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhh---hhh----------c--C--CCceEEEeccccCc----
Confidence 5678999999999999999999986668999999864311 110 0 0 24688899998742
Q ss_pred CcHHHHHHHhcccCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~ 473 (958)
......+..++|+|||+||.... ......++++|+.||.++++.|...+ ++|+|+||.+|||.... ...|+.+
T Consensus 373 --~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~ 449 (660)
T PRK08125 373 --SEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCTDKYFDEDTS 449 (660)
T ss_pred --HHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCCCCCCcCcccc
Confidence 11233455689999999997653 22334577899999999999999887 89999999999985422 2334322
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCc----ChhHHHHHHHHHHHHhCCc---C
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNW----NLVDLNLYILKAITRLGYA---P 545 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~----n~~d~~~~l~~~~~~~g~~---P 545 (958)
.........+.+.|+.||+++|+++..+. +.|++++++||+++||+.+.... .....+..++..+..-+.+ .
T Consensus 450 ~~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g 529 (660)
T PRK08125 450 NLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVD 529 (660)
T ss_pred ccccCCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeC
Confidence 11000111245689999999999998764 56999999999999999754310 1112344444443332211 2
Q ss_pred CCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC-CCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCch
Q psy4557 546 DIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN-PIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEP 621 (958)
Q Consensus 546 ~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~-~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~ 621 (958)
+.....+|++|++++++++.+..+.. ..+++||+.++. .+++.|+++.+.+. |.+...+....|.... ..+.
T Consensus 530 ~g~~~rd~i~v~Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~---~~~~- 605 (660)
T PRK08125 530 GGKQKRCFTDIRDGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFR---VVES- 605 (660)
T ss_pred CCceeeceeeHHHHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCcccccc---cccc-
Confidence 33457899999999999998876542 246899999985 79999999998653 5321111111110000 0000
Q ss_pred hHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q psy4557 622 LIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLP 678 (958)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~ 678 (958)
...+....... ....+|.+++++. +|.+...-=++-|+.+++|+.+.+=|.
T Consensus 606 -~~~~~~~~~~~--~~~~~d~~ka~~~---LGw~P~~~lee~l~~~i~~~~~~~~~~ 656 (660)
T PRK08125 606 -SSYYGKGYQDV--EHRKPSIRNARRL---LDWEPKIDMQETIDETLDFFLRTVDLT 656 (660)
T ss_pred -ccccccccccc--cccCCChHHHHHH---hCCCCCCcHHHHHHHHHHHHHhccccc
Confidence 00000000000 1123566666644 466533222457888999988665543
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=223.18 Aligned_cols=223 Identities=24% Similarity=0.461 Sum_probs=188.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
.|+++||||+++||+++|++|+++ ++|++++|+.+.++++.+.. ..+.++.+|+++.++++++++. ++++|
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~----~~~id 73 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAEL----PGATPFPVDLTDPEAIAAAVEQ----LGRLD 73 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHh----ccceEEecCCCCHHHHHHHHHh----cCCCC
Confidence 579999999999999999999999 99999999987766665433 2366789999999988877654 46899
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
++|||||......+.+.+.++|.+++++|+.+++.+++.+++.|.+. .+++|++||..+..+.++...|+.+|+++++
T Consensus 74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~v~~ss~~~~~~~~~~~~y~~~K~a~~~ 151 (227)
T PRK08219 74 VLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA--HGHVVFINSGAGLRANPGWGSYAASKFALRA 151 (227)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEcchHhcCcCCCCchHHHHHHHHHH
Confidence 99999999776667788899999999999999999999999988743 4799999999999888899999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecCC
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEPP 954 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p~ 954 (958)
+++.++.++... |++++|.||.+.|++........ .......++.+++|+|+.+++++.++....+.++.+.|.
T Consensus 152 ~~~~~~~~~~~~-i~~~~i~pg~~~~~~~~~~~~~~----~~~~~~~~~~~~~dva~~~~~~l~~~~~~~~~~~~~~~~ 225 (227)
T PRK08219 152 LADALREEEPGN-VRVTSVHPGRTDTDMQRGLVAQE----GGEYDPERYLRPETVAKAVRFAVDAPPDAHITEVVVRPR 225 (227)
T ss_pred HHHHHHHHhcCC-ceEEEEecCCccchHhhhhhhhh----ccccCCCCCCCHHHHHHHHHHHHcCCCCCccceEEEecC
Confidence 999999998776 99999999999998643221110 001112346899999999999999998899999999986
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=233.48 Aligned_cols=311 Identities=20% Similarity=0.228 Sum_probs=212.0
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|++.|++++ .+|+++.|...... .+ . ..+++++.+|++. .
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---~~-------------~--~~~~~~~~~D~~~-------~ 55 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVRPTSDRR---NL-------------E--GLDVEIVEGDLRD-------P 55 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEecCcccc---cc-------------c--cCCceEEEeeCCC-------H
Confidence 68999999999999999999764 68999998643210 00 0 1257788999863 3
Q ss_pred HHHHHHhcccCEEEEcccccCc-ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC--CCCcccccccCc
Q psy4557 401 DEYVSLSYEIDMIIHAAAFVNL-ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS--ENFQEDYTVADF 477 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v~~-~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~--~~~~e~~~~~~~ 477 (958)
+....+...+|+|||+|+..+. ...+......|+.|+.++++.|...++++|+|+||.++|+... .++.|+.+.
T Consensus 56 ~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~--- 132 (328)
T TIGR03466 56 ASLRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPS--- 132 (328)
T ss_pred HHHHHHHhCCCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCC---
Confidence 5677777889999999987543 2345677889999999999999988889999999999998532 223332211
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHhh-CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCC-CCCcCCccc
Q psy4557 478 DDFMTTTSGYGQSKIVSEYLVLNAGQ-MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPD-IDWYLEFTP 555 (958)
Q Consensus 478 ~~~~~~~~gY~~SK~~aE~lv~~a~~-~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~-~~~~~~~~p 555 (958)
.+....++|+.||+.+|+++..+.. .|++++++||+++||+......... .++..+.. +..|. .+...++++
T Consensus 133 -~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~i~ 206 (328)
T TIGR03466 133 -SLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTG----RIIVDFLN-GKMPAYVDTGLNLVH 206 (328)
T ss_pred -CcccccChHHHHHHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHH----HHHHHHHc-CCCceeeCCCcceEE
Confidence 1112346899999999999988654 5999999999999998754322221 22222222 22232 234478999
Q ss_pred HHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH-cCCCccccChHHHHHHHhc--------cCCCchh--HH
Q psy4557 556 VDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT-YGYNIKTVPYEKWFHKLNK--------RELSEPL--IQ 624 (958)
Q Consensus 556 VD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~~~~~v~~~eW~~~~~~--------~~~~~~~--~~ 624 (958)
|+++|++++.+.... ..+..||+. +.++++.|+++.+.+ .|.+...++...|...... .....+. ..
T Consensus 207 v~D~a~a~~~~~~~~-~~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (328)
T TIGR03466 207 VDDVAEGHLLALERG-RIGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVD 284 (328)
T ss_pred HHHHHHHHHHHHhCC-CCCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 999999999887654 356788886 588999999998875 4766555665555443110 0000110 00
Q ss_pred HHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy4557 625 ILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLL 677 (958)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l 677 (958)
.++ +......+|++++++.| |+++.++ ++.|..++.|+.+.|+|
T Consensus 285 ~~~-----~~~~~~~~d~~k~~~~l---g~~p~~~-~~~i~~~~~~~~~~~~~ 328 (328)
T TIGR03466 285 GVR-----MAKKKMFFSSAKAVREL---GYRQRPA-REALRDAVEWFRANGYL 328 (328)
T ss_pred HHH-----HHhccCCCChHHHHHHc---CCCCcCH-HHHHHHHHHHHHHhCCC
Confidence 000 11123457888777655 7776544 56789999999988875
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-24 Score=244.53 Aligned_cols=249 Identities=19% Similarity=0.172 Sum_probs=173.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||+||+++|+++ +.+|+++.|..... .+++.. .+ ...+++++.+|+..+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~-G~~V~~ld~~~~~~--~~~~~~---~~--------~~~~~~~i~~D~~~~---- 179 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMAR-GDSVIVVDNFFTGR--KENVMH---HF--------SNPNFELIRHDVVEP---- 179 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHC-cCEEEEEeCCCccc--hhhhhh---hc--------cCCceEEEECCccCh----
Confidence 4578999999999999999999987 46788887643211 111111 00 024678888997432
Q ss_pred CcHHHHHHHhcccCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~ 473 (958)
...++|+|||+||.... ..+...+..+|+.||.+|+++|+..+ ++|+|+||..||+.... +..|+..
T Consensus 180 --------~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g-~r~V~~SS~~VYg~~~~~p~~E~~~ 250 (442)
T PLN02206 180 --------ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEVYGDPLQHPQVETYW 250 (442)
T ss_pred --------hhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC-CEEEEECChHHhCCCCCCCCCcccc
Confidence 12469999999997542 22445677899999999999998877 48999999999985422 2223211
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc---CCCCC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA---PDIDW 549 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~---P~~~~ 549 (958)
...++..+.+.|+.||+.+|+++..+. +.|++++++||+++||+...... ..++..++.....-+.+ .+.+.
T Consensus 251 --~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~--~~~v~~~i~~~l~~~~i~i~g~G~~ 326 (442)
T PLN02206 251 --GNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQ 326 (442)
T ss_pred --ccCCCCCccchHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccc--cchHHHHHHHHHcCCCcEEeCCCCE
Confidence 011223446789999999999998754 46999999999999998642111 11233444433332222 23345
Q ss_pred cCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CC
Q psy4557 550 YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GY 599 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~ 599 (958)
..+|++||+++++++.++... .+.+||++++..+++.|+++.+.+. |.
T Consensus 327 ~rdfi~V~Dva~ai~~a~e~~--~~g~yNIgs~~~~sl~Elae~i~~~~g~ 375 (442)
T PLN02206 327 TRSFQFVSDLVEGLMRLMEGE--HVGPFNLGNPGEFTMLELAKVVQETIDP 375 (442)
T ss_pred EEeEEeHHHHHHHHHHHHhcC--CCceEEEcCCCceeHHHHHHHHHHHhCC
Confidence 679999999999999887543 2458999999999999999998764 44
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-24 Score=244.12 Aligned_cols=249 Identities=21% Similarity=0.201 Sum_probs=175.1
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+..+|||||||||||+||+++|+++ +.+|+++.|..... ...+... + . ..++.++.+|+..+.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~-G~~V~~ldr~~~~~--~~~~~~~---~------~--~~~~~~~~~Di~~~~--- 181 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGR-GDEVIVIDNFFTGR--KENLVHL---F------G--NPRFELIRHDVVEPI--- 181 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCCCcc--HhHhhhh---c------c--CCceEEEECcccccc---
Confidence 4568999999999999999999987 46888887753211 1111100 0 0 136778888875321
Q ss_pred CcHHHHHHHhcccCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~ 473 (958)
..++|+|||+||.... ......++.+||.||.+|+++|+..+ ++|+|+||.+|||.... +..|+..
T Consensus 182 ---------~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g-~r~V~~SS~~VYg~~~~~p~~E~~~ 251 (436)
T PLN02166 182 ---------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-ARFLLTSTSEVYGDPLEHPQKETYW 251 (436)
T ss_pred ---------ccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC-CEEEEECcHHHhCCCCCCCCCcccc
Confidence 2368999999997543 22345677899999999999998877 48999999999985432 2333211
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---CCCC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---DIDW 549 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~~~~ 549 (958)
....+..+.+.|+.||+.+|+++..+. +.|++++++||+++||+...... ..++..++..+..-+.++ +...
T Consensus 252 --~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~--~~~i~~~i~~~l~~~~i~v~g~g~~ 327 (436)
T PLN02166 252 --GNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDD--GRVVSNFVAQTIRKQPMTVYGDGKQ 327 (436)
T ss_pred --ccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCc--cchHHHHHHHHhcCCCcEEeCCCCe
Confidence 011233456789999999999998764 46999999999999998753111 122344444444323221 2235
Q ss_pred cCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CC
Q psy4557 550 YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GY 599 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~ 599 (958)
..+|++|++++++++.+.... ...+||++++..+++.|+++.+.+. |.
T Consensus 328 ~rdfi~V~Dva~ai~~~~~~~--~~giyNIgs~~~~Si~ela~~I~~~~g~ 376 (436)
T PLN02166 328 TRSFQYVSDLVDGLVALMEGE--HVGPFNLGNPGEFTMLELAEVVKETIDS 376 (436)
T ss_pred EEeeEEHHHHHHHHHHHHhcC--CCceEEeCCCCcEeHHHHHHHHHHHhCC
Confidence 689999999999999887543 3469999999999999999999764 43
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=235.06 Aligned_cols=239 Identities=17% Similarity=0.259 Sum_probs=161.4
Q ss_pred eEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcHH
Q psy4557 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQD 401 (958)
Q Consensus 322 VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~~ 401 (958)
|||||||||||+||+++|++++ .+++.++|.......... +..+|+.+. .+.+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~~~~~~~~~~----------------------~~~~~~~d~----~~~~ 54 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDNLKDGTKFVN----------------------LVDLDIADY----MDKE 54 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecCCCcchHHHh----------------------hhhhhhhhh----hhHH
Confidence 8999999999999999999874 456666665432110000 011222210 0111
Q ss_pred H-HHHHh-----cccCEEEEcccccCcc-cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccc
Q psy4557 402 E-YVSLS-----YEIDMIIHAAAFVNLI-LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTV 474 (958)
Q Consensus 402 ~-~~~l~-----~~vd~IiH~AA~v~~~-~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~ 474 (958)
. ...+. .++|+|||+||..... .....+.+.|+.||.+|+++|.+.++ +|+|+||.+|||.......++
T Consensus 55 ~~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E--- 130 (308)
T PRK11150 55 DFLAQIMAGDDFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTDDFIEE--- 130 (308)
T ss_pred HHHHHHhcccccCCccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCCCCCcc---
Confidence 1 12222 2689999999965432 12345678999999999999998875 699999999998643221111
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCC-----CC
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPD-----ID 548 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~-----~~ 548 (958)
..+..+.+.|+.||+.+|++++.+. +.|++++++||++|||+............+.+.+.+.+ |..|. .+
T Consensus 131 ---~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~g~~~ 206 (308)
T PRK11150 131 ---REYEKPLNVYGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNN-GENPKLFEGSEN 206 (308)
T ss_pred ---CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhc-CCCCEEecCCCc
Confidence 1223456789999999999998764 46999999999999998753322222233344443332 33221 12
Q ss_pred CcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 549 WYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 549 ~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
..++|++||++|++++.+.... .+.+||+++.+++++.|+++.+.+.
T Consensus 207 ~~r~~i~v~D~a~a~~~~~~~~--~~~~yni~~~~~~s~~el~~~i~~~ 253 (308)
T PRK11150 207 FKRDFVYVGDVAAVNLWFWENG--VSGIFNCGTGRAESFQAVADAVLAY 253 (308)
T ss_pred eeeeeeeHHHHHHHHHHHHhcC--CCCeEEcCCCCceeHHHHHHHHHHH
Confidence 3589999999999998877643 3569999999999999999999763
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=233.96 Aligned_cols=305 Identities=16% Similarity=0.226 Sum_probs=194.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++|||||||||||+||+++|+++ +.+|+++.|.... ..++... + .. ..++.++.+|++.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~-G~~V~~~~r~~~~---~~~~~~~---~------~~-~~~~~~~~~Dl~~----- 69 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQR-GYTVHATLRDPAK---SLHLLSK---W------KE-GDRLRLFRADLQE----- 69 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCChHH---HHHHHHh---h------cc-CCeEEEEECCCCC-----
Confidence 4568999999999999999999976 4688888875321 1122111 1 01 2478889999874
Q ss_pred CcHHHHHHHhcccCEEEEcccccCccc-----ChHH-----HHhhhHHHHHHHHHhhccCC-CccEEEEecccccCCCC-
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLIL-----PYNA-----LYKSNVLATKNLIEFSFLNK-IKSFHYVSTDSIYPSTS- 465 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~~-----~~~~-----~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~v~~~~~- 465 (958)
.+.+..+..++|+|||+||..+... +.+. ..+.|+.||.+|++.|.+.+ +++|+|+||.++||...
T Consensus 70 --~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~ 147 (353)
T PLN02896 70 --EGSFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDS 147 (353)
T ss_pred --HHHHHHHHcCCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhcccccc
Confidence 3567777778999999999865432 2333 33456799999999997654 78999999999998432
Q ss_pred -----CCCcccccccCcC---CCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 466 -----ENFQEDYTVADFD---DFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 466 -----~~~~e~~~~~~~~---~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
..+.|+.. .... .+..+.+.|+.||+++|+++.... +.|++++++||++|||+...+..+ .++..++.
T Consensus 148 ~~~~~~~~~E~~~-~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~--~~~~~~~~ 224 (353)
T PLN02896 148 NGRWRAVVDETCQ-TPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVP--SSIQVLLS 224 (353)
T ss_pred CCCCCCccCcccC-CcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCC--chHHHHHH
Confidence 11223210 0000 011234589999999999998754 569999999999999997654322 22222222
Q ss_pred HHHHhCC---cCCCC------CcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccCh
Q psy4557 537 AITRLGY---APDID------WYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPY 606 (958)
Q Consensus 537 ~~~~~g~---~P~~~------~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~ 606 (958)
.. .|. .|... ...+|++||++|++++.+...... +.+|+. ...++++.++++.+.+. +. .+ +.
T Consensus 225 ~~--~g~~~~~~~~~~~~~~~~~~dfi~v~Dva~a~~~~l~~~~~-~~~~~~-~~~~~s~~el~~~i~~~~~~-~~-~~- 297 (353)
T PLN02896 225 PI--TGDSKLFSILSAVNSRMGSIALVHIEDICDAHIFLMEQTKA-EGRYIC-CVDSYDMSELINHLSKEYPC-SN-IQ- 297 (353)
T ss_pred Hh--cCCccccccccccccccCceeEEeHHHHHHHHHHHHhCCCc-CccEEe-cCCCCCHHHHHHHHHHhCCC-CC-cc-
Confidence 11 121 11111 135899999999999998765432 346765 56789999999999763 21 00 00
Q ss_pred HHHHHHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHHHCCCC
Q psy4557 607 EKWFHKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETN-DHTVRQFLDNLRNSNLL 677 (958)
Q Consensus 607 ~eW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~-~~~~~~~~~~~~~~g~l 677 (958)
+ ...... .. ......|+++. +.+|.. |..+ ++-|+++++|+.+.|++
T Consensus 298 --~--~~~~~~-------------~~--~~~~~~~~~~~----~~lGw~-p~~~l~~~i~~~~~~~~~~~~~ 345 (353)
T PLN02896 298 --V--RLDEEK-------------RG--SIPSEISSKKL----RDLGFE-YKYGIEEIIDQTIDCCVDHGFL 345 (353)
T ss_pred --c--cccccc-------------cC--ccccccCHHHH----HHcCCC-ccCCHHHHHHHHHHHHHHCCCC
Confidence 0 000000 00 00111233222 346765 4433 56799999999999998
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-23 Score=233.39 Aligned_cols=307 Identities=16% Similarity=0.172 Sum_probs=200.7
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChh-hHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNK-TLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~-~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++|||||||||+|+||+++|++++ .+|+++.|..... ....++.+... ....++.++.+|++.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~D~~~----- 69 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDNLDNSSEEALRRVKELAG---------DLGDNLVFHKVDLRD----- 69 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCcchHHHHHHHHHhhc---------ccCccceEEecCcCC-----
Confidence 4689999999999999999999764 6888887754321 11222222110 112467888999863
Q ss_pred CcHHHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCccc
Q psy4557 398 KNQDEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQED 471 (958)
Q Consensus 398 ~~~~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~ 471 (958)
.+.+..+.. .+|+|||+||..... .....+.++|+.|+.+++++|...++++|+|+||.++|+... .+..|+
T Consensus 70 --~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~ 147 (352)
T PLN02240 70 --KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEE 147 (352)
T ss_pred --HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC
Confidence 345555443 689999999975432 234457889999999999999888888999999999998532 223332
Q ss_pred ccccCcCCCCCCCCChhHHHHHHHHHHHHHh-h-CCCCEEEEecCceeccCCCCCcCh-----hHHHHHHHHHHHHhCCc
Q psy4557 472 YTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-Q-MGLPVSIVRCGNIGGSLEFKNWNL-----VDLNLYILKAITRLGYA 544 (958)
Q Consensus 472 ~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~-~glp~~I~R~g~i~G~~~~g~~n~-----~d~~~~l~~~~~~~g~~ 544 (958)
.+..+.++|+.||+.+|++++... . .+++++++|++++||+...+.+.. ...+..++.... .+..
T Consensus 148 -------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~ 219 (352)
T PLN02240 148 -------FPLSATNPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVA-VGRR 219 (352)
T ss_pred -------CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHH-hCCC
Confidence 223456799999999999998753 3 479999999999999765433211 111112222221 1211
Q ss_pred ------------CCCCCcCCcccHHHHHHHHHHHhcCc----CCCCceEEecCCCCCCHHHHHHHHHH-cCCCccccChH
Q psy4557 545 ------------PDIDWYLEFTPVDFLTKSLVQLTTNV----NNANKIYNFINTNPIHIKTLVSVLNT-YGYNIKTVPYE 607 (958)
Q Consensus 545 ------------P~~~~~~~~~pVD~va~aiv~l~~~~----~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~~~~~v~~~ 607 (958)
|+.....+|++|+++|++++.++... ...+++||+++++++++.|+++.+.+ .|.+.......
T Consensus 220 ~~~~~~g~~~~~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 299 (352)
T PLN02240 220 PELTVFGNDYPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAP 299 (352)
T ss_pred CceEEeCCCCCCCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCC
Confidence 23345689999999999988776432 23457999999999999999999975 45443221100
Q ss_pred HHHHHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCC
Q psy4557 608 KWFHKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSN 675 (958)
Q Consensus 608 eW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g 675 (958)
. ...+ ......|+++++ +.+|.++...-.+-|+.+++|+.+.+
T Consensus 300 ~-------~~~~---------------~~~~~~d~~k~~---~~lg~~p~~~l~~~l~~~~~~~~~~~ 342 (352)
T PLN02240 300 R-------RPGD---------------AEEVYASTEKAE---KELGWKAKYGIDEMCRDQWNWASKNP 342 (352)
T ss_pred C-------CCCC---------------hhhhhcCHHHHH---HHhCCCCCCCHHHHHHHHHHHHHhCc
Confidence 0 0000 011123555544 44477755344567899999987643
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=236.06 Aligned_cols=255 Identities=18% Similarity=0.157 Sum_probs=176.1
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||+||+++|+++ +.+|+++.|..... ..+++........ .....+++++.+|++.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~d------- 66 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEK-GYEVHGLIRRSSSF-NTQRIEHIYEDPH-----NVNKARMKLHYGDLTD------- 66 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHC-CCEEEEEecCCccc-chhhhhhhhhccc-----cccccceeEEEeccCC-------
Confidence 47999999999999999999986 46899998875421 0122221110000 0112468899999873
Q ss_pred HHHHHHHhc--ccCEEEEcccccCcccCh---HHHHhhhHHHHHHHHHhhccCCC---ccEEEEecccccCCCCC-CCcc
Q psy4557 400 QDEYVSLSY--EIDMIIHAAAFVNLILPY---NALYKSNVLATKNLIEFSFLNKI---KSFHYVSTDSIYPSTSE-NFQE 470 (958)
Q Consensus 400 ~~~~~~l~~--~vd~IiH~AA~v~~~~~~---~~~~~~NV~gt~~ll~~a~~~~~---k~~~~vST~~v~~~~~~-~~~e 470 (958)
.+.+..+.. .+|+|||+||..+....+ .....+|+.||.+|++.|...++ ++|+|+||.+|||.... +..|
T Consensus 67 ~~~l~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E 146 (343)
T TIGR01472 67 SSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNE 146 (343)
T ss_pred HHHHHHHHHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCC
Confidence 355666655 479999999986543332 23456799999999999987654 38999999999985422 2222
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC-----c
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY-----A 544 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~-----~ 544 (958)
+ .+..+.+.|+.||+.+|++++.+. +.|+++++.|+.+++|+...... ....+..+++.+.. |. +
T Consensus 147 ~-------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 217 (343)
T TIGR01472 147 T-------TPFYPRSPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENF-VTRKITRAAAKIKL-GLQEKLYL 217 (343)
T ss_pred C-------CCCCCCChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccc-cchHHHHHHHHHHc-CCCCceee
Confidence 2 223467899999999999998764 46999999999999998642211 11122233332222 21 1
Q ss_pred CCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CC
Q psy4557 545 PDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GY 599 (958)
Q Consensus 545 P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~ 599 (958)
.+.+...+|++||+++++++.++.+.. ..+||+.++.++++.|+++.+.+. |.
T Consensus 218 g~g~~~rd~i~V~D~a~a~~~~~~~~~--~~~yni~~g~~~s~~e~~~~i~~~~g~ 271 (343)
T TIGR01472 218 GNLDAKRDWGHAKDYVEAMWLMLQQDK--PDDYVIATGETHSVREFVEVSFEYIGK 271 (343)
T ss_pred CCCccccCceeHHHHHHHHHHHHhcCC--CccEEecCCCceeHHHHHHHHHHHcCC
Confidence 233467999999999999998876542 358999999999999999988753 54
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=232.20 Aligned_cols=246 Identities=24% Similarity=0.270 Sum_probs=179.2
Q ss_pred ceEEeccccchHHHHHHHHhcCC-CCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDT-KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~-~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+|||||||||+|++|+++|++++ ..+|+|+.|..... ..+++.+. . ...++.++.+|++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~-~~~~~~~~----------~-~~~~~~~~~~Dl~~------- 61 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAG-NLENLADL----------E-DNPRYRFVKGDIGD------- 61 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcch-hhhhhhhh----------c-cCCCcEEEEcCCcC-------
Confidence 58999999999999999999875 46899987743211 11122111 0 01367888999874
Q ss_pred HHHHHHHhcc--cCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCC-ccEEEEecccccCCCCC--CCccc
Q psy4557 400 QDEYVSLSYE--IDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKI-KSFHYVSTDSIYPSTSE--NFQED 471 (958)
Q Consensus 400 ~~~~~~l~~~--vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~-k~~~~vST~~v~~~~~~--~~~e~ 471 (958)
.+.+..+.+. +|+|||+||.++... ....+..+|+.|+.++++.|..... .+++|+||..|||.... ...|.
T Consensus 62 ~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~ 141 (317)
T TIGR01181 62 RELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTET 141 (317)
T ss_pred HHHHHHHHhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCC
Confidence 3566666665 999999999875432 3445678999999999999987533 38999999999986432 12222
Q ss_pred ccccCcCCCCCCCCChhHHHHHHHHHHHHH-hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---CC
Q psy4557 472 YTVADFDDFMTTTSGYGQSKIVSEYLVLNA-GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---DI 547 (958)
Q Consensus 472 ~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a-~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~~ 547 (958)
.+..+.+.|+.||+.+|+++..+ .+.|++++|+||+++||+.... ..++..++.....-+.+| +.
T Consensus 142 -------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~g 210 (317)
T TIGR01181 142 -------TPLAPSSPYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFP----EKLIPLMITNALAGKPLPVYGDG 210 (317)
T ss_pred -------CCCCCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCc----ccHHHHHHHHHhcCCCceEeCCC
Confidence 12245678999999999999874 4679999999999999986432 234555555554433333 23
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
+...+|++||++++++..+..+. ..+.+||++++.++++.|+.+.+.+.
T Consensus 211 ~~~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~ 259 (317)
T TIGR01181 211 QQVRDWLYVEDHCRAIYLVLEKG-RVGETYNIGGGNERTNLEVVETILEL 259 (317)
T ss_pred ceEEeeEEHHHHHHHHHHHHcCC-CCCceEEeCCCCceeHHHHHHHHHHH
Confidence 35679999999999999888653 34689999999999999999999764
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >KOG1429|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-24 Score=219.71 Aligned_cols=248 Identities=20% Similarity=0.190 Sum_probs=173.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.+.+|++|||.||+||||+++|+.++ ..|+++.--.+. ....+..+ . . ..+++++.-|+.
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~eg-h~VIa~Dn~ftg------~k~n~~~~---~--~--~~~fel~~hdv~------ 85 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEG-HEVIALDNYFTG------RKENLEHW---I--G--HPNFELIRHDVV------ 85 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcC-CeEEEEeccccc------chhhcchh---c--c--CcceeEEEeech------
Confidence 45799999999999999999999887 566665432221 11111111 0 1 134445555543
Q ss_pred CcHHHHHHHhcccCEEEEccccc---CcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFV---NLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTV 474 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v---~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~ 474 (958)
..+..++|.|||+||.. ++....-....+|+.||.+++-+|++-+ ++|.+.||..|||...+....+. .
T Consensus 86 ------~pl~~evD~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgdp~~hpq~e~-y 157 (350)
T KOG1429|consen 86 ------EPLLKEVDQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGDPLVHPQVET-Y 157 (350)
T ss_pred ------hHHHHHhhhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCCcccCCCccc-c
Confidence 23667899999999975 4555555667899999999999998887 89999999999997432111111 1
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh---CCcCCCCCc
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL---GYAPDIDWY 550 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~---g~~P~~~~~ 550 (958)
...-.+..+...|..-|.++|.|+.... +.|+.+.|.|++|+|||.- .|+..--+..++....+. -.+-+..++
T Consensus 158 wg~vnpigpr~cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm--~~~dgrvvsnf~~q~lr~epltv~g~G~qt 235 (350)
T KOG1429|consen 158 WGNVNPIGPRSCYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRM--HMDDGRVVSNFIAQALRGEPLTVYGDGKQT 235 (350)
T ss_pred ccccCcCCchhhhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCcc--ccCCChhhHHHHHHHhcCCCeEEEcCCcce
Confidence 1112334577899999999999998754 5699999999999999973 344321111222222211 122244578
Q ss_pred CCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 551 LEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 551 ~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
..|++|+++.++++.+..+.... -+|++||...++.++.+.+.+.
T Consensus 236 RSF~yvsD~Vegll~Lm~s~~~~--pvNiGnp~e~Tm~elAemv~~~ 280 (350)
T KOG1429|consen 236 RSFQYVSDLVEGLLRLMESDYRG--PVNIGNPGEFTMLELAEMVKEL 280 (350)
T ss_pred EEEEeHHHHHHHHHHHhcCCCcC--CcccCCccceeHHHHHHHHHHH
Confidence 99999999999999999876543 3999999999999999999875
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=231.35 Aligned_cols=254 Identities=17% Similarity=0.209 Sum_probs=173.7
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+++|||||||||||++|+++|+++ +.+|++++|...... ....... . .....++.++.+|++.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~-G~~V~~~~r~~~~~~---~~~~~~~-~------~~~~~~~~~~~~D~~d------ 67 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFR-GYTINATVRDPKDRK---KTDHLLA-L------DGAKERLKLFKADLLD------ 67 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHC-CCEEEEEEcCCcchh---hHHHHHh-c------cCCCCceEEEeCCCCC------
Confidence 468999999999999999999976 467887777643211 1111110 0 0112478889999874
Q ss_pred cHHHHHHHhcccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccC-CCccEEEEecccccCCCC------CCC
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSIYPSTS------ENF 468 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v~~~~~------~~~ 468 (958)
.+.+..+.+++|+|||+||...... +......+|+.||.++++.|... +.++|+|+||.++|+... ...
T Consensus 68 -~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~ 146 (325)
T PLN02989 68 -EGSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVV 146 (325)
T ss_pred -chHHHHHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCcc
Confidence 3456667778999999999754322 23456789999999999998764 467999999988775321 112
Q ss_pred cccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCC
Q psy4557 469 QEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI 547 (958)
Q Consensus 469 ~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~ 547 (958)
.|+.+. .......+.+.|+.||+.+|+++.... +.|++++|+||+++||+......+ +...++.... .|..|..
T Consensus 147 ~E~~~~-~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~---~~~~~i~~~~-~~~~~~~ 221 (325)
T PLN02989 147 DETFFT-NPSFAEERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLN---FSVAVIVELM-KGKNPFN 221 (325)
T ss_pred CcCCCC-chhHhcccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCC---chHHHHHHHH-cCCCCCC
Confidence 332211 100001124689999999999998754 459999999999999997643222 2223333222 2322322
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
....+|++|+++|++++.+...... +.+||+.+ .++++.++++.+.+.
T Consensus 222 ~~~r~~i~v~Dva~a~~~~l~~~~~-~~~~ni~~-~~~s~~ei~~~i~~~ 269 (325)
T PLN02989 222 TTHHRFVDVRDVALAHVKALETPSA-NGRYIIDG-PVVTIKDIENVLREF 269 (325)
T ss_pred CcCcCeeEHHHHHHHHHHHhcCccc-CceEEEec-CCCCHHHHHHHHHHH
Confidence 3346899999999999998765443 45899964 589999999999875
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=233.43 Aligned_cols=244 Identities=23% Similarity=0.255 Sum_probs=175.7
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||+||+++|+++ +..|+.+.|....... . ...+.++.+|+...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~~~~------------------~-~~~~~~~~~d~~~~------- 54 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDGLDP------------------L-LSGVEFVVLDLTDR------- 54 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCCccccc------------------c-ccccceeeecccch-------
Confidence 4999999999999999999987 6788888886543210 0 03566778887643
Q ss_pred HHHHHHhccc-CEEEEcccccCcccChH----HHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC--CCccccc
Q psy4557 401 DEYVSLSYEI-DMIIHAAAFVNLILPYN----ALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE--NFQEDYT 473 (958)
Q Consensus 401 ~~~~~l~~~v-d~IiH~AA~v~~~~~~~----~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~--~~~e~~~ 473 (958)
+....+...+ |+|||+||.+....... .++.+|+.||.+++++|.+.++++|+|.||.++++.... ...|+.
T Consensus 55 ~~~~~~~~~~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~- 133 (314)
T COG0451 55 DLVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDL- 133 (314)
T ss_pred HHHHHHHhcCCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCccccc-
Confidence 3455566667 99999999987655433 488999999999999999988899999888888775411 223321
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHhh-CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHH-HhC---CcCCCC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAGQ-MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAIT-RLG---YAPDID 548 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~-~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~-~~g---~~P~~~ 548 (958)
.+..+.+.|+.||+.+|+++..+.. .|++++|+||+.|||+...+.++. .+...++.... ... ..++..
T Consensus 134 -----~~~~p~~~Yg~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 207 (314)
T COG0451 134 -----GPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSS-GVVSAFIRQLLKGEPIIVIGGDGS 207 (314)
T ss_pred -----CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCc-CcHHHHHHHHHhCCCcceEeCCCc
Confidence 1223445899999999999987654 699999999999999987655221 11222111111 111 111223
Q ss_pred CcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCC-CCCHHHHHHHHHHc-CCC
Q psy4557 549 WYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTN-PIHIKTLVSVLNTY-GYN 600 (958)
Q Consensus 549 ~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~-~~~~~~l~~~l~~~-g~~ 600 (958)
...++++||+++++++.+..+.... +||+.++. +.++.++.+.+.+. |.+
T Consensus 208 ~~~~~i~v~D~a~~~~~~~~~~~~~--~~ni~~~~~~~~~~e~~~~~~~~~~~~ 259 (314)
T COG0451 208 QTRDFVYVDDVADALLLALENPDGG--VFNIGSGTAEITVRELAEAVAEAVGSK 259 (314)
T ss_pred eeEeeEeHHHHHHHHHHHHhCCCCc--EEEeCCCCCcEEHHHHHHHHHHHhCCC
Confidence 4468999999999999998766543 99999987 89999999988753 544
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=231.62 Aligned_cols=244 Identities=18% Similarity=0.251 Sum_probs=168.4
Q ss_pred eEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcHH
Q psy4557 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQD 401 (958)
Q Consensus 322 VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~~ 401 (958)
|||||||||||+||++.|++++...|+++.|..... ++.+. .. ..+.+|+.. .+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~----~~~~~-------------~~--~~~~~d~~~-------~~ 54 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH----KFLNL-------------AD--LVIADYIDK-------ED 54 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch----hhhhh-------------hh--eeeeccCcc-------hh
Confidence 699999999999999999987644677776644321 11100 00 234556543 23
Q ss_pred HHHHHh----cccCEEEEcccccCcc-cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccC
Q psy4557 402 EYVSLS----YEIDMIIHAAAFVNLI-LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVAD 476 (958)
Q Consensus 402 ~~~~l~----~~vd~IiH~AA~v~~~-~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~ 476 (958)
..+.+. .++|+|||+||..+.. .+.....++|+.||.+|++.|.+.+. +|+|+||.+||+....++.|+.+
T Consensus 55 ~~~~~~~~~~~~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~e~~~--- 130 (314)
T TIGR02197 55 FLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGEAGFREGRE--- 130 (314)
T ss_pred HHHHHHhhccCCCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCCCCcccccC---
Confidence 344443 4799999999976432 23445678999999999999988775 89999999999865443333321
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHH-h--hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc---------
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNA-G--QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA--------- 544 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a-~--~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~--------- 544 (958)
+..+.+.|+.||+.+|++++.+ . ..+++++++|+++|||+..........++..+++....-+..
T Consensus 131 ---~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (314)
T TIGR02197 131 ---LERPLNVYGYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGF 207 (314)
T ss_pred ---cCCCCCHHHHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCcccc
Confidence 1235678999999999999763 2 236799999999999987542222223333444333322211
Q ss_pred CCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCC
Q psy4557 545 PDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYN 600 (958)
Q Consensus 545 P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~ 600 (958)
++.+...+|++||+++++++.+... ..+.+||+.++.++++.|+++.+.+. |.+
T Consensus 208 ~~g~~~~~~i~v~D~a~~i~~~~~~--~~~~~yni~~~~~~s~~e~~~~i~~~~g~~ 262 (314)
T TIGR02197 208 KDGEQLRDFVYVKDVVDVNLWLLEN--GVSGIFNLGTGRARSFNDLADAVFKALGKD 262 (314)
T ss_pred CCCCceeeeEEHHHHHHHHHHHHhc--ccCceEEcCCCCCccHHHHHHHHHHHhCCC
Confidence 1223457999999999999998876 34679999999999999999999764 543
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=230.30 Aligned_cols=220 Identities=16% Similarity=0.120 Sum_probs=154.1
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||+||+++|++++ +|+++.|... .+.||+. +.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~-----------------------------~~~~Dl~-------d~ 43 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHST-----------------------------DYCGDFS-------NP 43 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccccc-----------------------------cccCCCC-------CH
Confidence 69999999999999999998775 5788776311 1346765 34
Q ss_pred HHHHHHhc--ccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcccccc
Q psy4557 401 DEYVSLSY--EIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYTV 474 (958)
Q Consensus 401 ~~~~~l~~--~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~~ 474 (958)
+....+.. ++|+||||||..+... ..+..+.+|+.||.+|++.|...+ ++|+|+||..||+.... ++.|+
T Consensus 44 ~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss~~Vy~~~~~~p~~E~--- 119 (299)
T PRK09987 44 EGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYSTDYVFPGTGDIPWQET--- 119 (299)
T ss_pred HHHHHHHHhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEccceEECCCCCCCcCCC---
Confidence 55555554 5899999999875432 234456799999999999999887 47999999999975432 33333
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---C--CCC
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---D--IDW 549 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~--~~~ 549 (958)
++..|.+.|++||+.+|+++.... .+.+|+|++++||+... .++..+++.+..-+.++ + ...
T Consensus 120 ----~~~~P~~~Yg~sK~~~E~~~~~~~---~~~~ilR~~~vyGp~~~------~~~~~~~~~~~~~~~~~v~~d~~g~~ 186 (299)
T PRK09987 120 ----DATAPLNVYGETKLAGEKALQEHC---AKHLIFRTSWVYAGKGN------NFAKTMLRLAKEREELSVINDQFGAP 186 (299)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEecceecCCCCC------CHHHHHHHHHhcCCCeEEeCCCcCCC
Confidence 223567889999999999987643 46799999999998632 24455555444322222 1 111
Q ss_pred cCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 550 YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
..++.-+|++++++..+..... .+.+||++++.+++|.|+.+.+.+
T Consensus 187 ~~~~~~~d~~~~~~~~~~~~~~-~~giyni~~~~~~s~~e~~~~i~~ 232 (299)
T PRK09987 187 TGAELLADCTAHAIRVALNKPE-VAGLYHLVASGTTTWHDYAALVFE 232 (299)
T ss_pred CCHHHHHHHHHHHHHHhhccCC-CCCeEEeeCCCCccHHHHHHHHHH
Confidence 2233345666666665543322 346999999999999999987754
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-23 Score=216.50 Aligned_cols=208 Identities=22% Similarity=0.262 Sum_probs=168.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||++|||+++|++|+++|++|++++|+.+.++++.. . .+.++.+|+++.++++++++++.. +++|+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~----~--~~~~~~~D~~~~~~v~~~~~~~~~--~~~d~ 73 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA----L--GAEALALDVADPASVAGLAWKLDG--EALDA 73 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh----c--cceEEEecCCCHHHHHHHHHHhcC--CCCCE
Confidence 689999999999999999999999999999999877665442 2 245789999999999988776632 57999
Q ss_pred EEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC---hhhhHHHH
Q psy4557 797 LVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL---AVYTGTKY 871 (958)
Q Consensus 797 lInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~---~~Y~asKa 871 (958)
+|||||... .....+.+.++|++++++|+.|++.+++.++|+|.+ ..|++|++||.++..+.... ..|+++|+
T Consensus 74 vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~g~iv~isS~~~~~~~~~~~~~~~Y~~sK~ 151 (222)
T PRK06953 74 AVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEA--AGGVLAVLSSRMGSIGDATGTTGWLYRASKA 151 (222)
T ss_pred EEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhc--cCCeEEEEcCcccccccccCCCccccHHhHH
Confidence 999999863 234567789999999999999999999999998853 35899999998876653332 35999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
+++++++.++.++ .+++||+|+||+++|+|... .+...+++.+..++.++.... ...++.++
T Consensus 152 a~~~~~~~~~~~~--~~i~v~~v~Pg~i~t~~~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 213 (222)
T PRK06953 152 ALNDALRAASLQA--RHATCIALHPGWVRTDMGGA---------------QAALDPAQSVAGMRRVIAQAT-RRDNGRFF 213 (222)
T ss_pred HHHHHHHHHhhhc--cCcEEEEECCCeeecCCCCC---------------CCCCCHHHHHHHHHHHHHhcC-cccCceEE
Confidence 9999999999886 47999999999999998542 123578888888888766443 45666655
Q ss_pred c
Q psy4557 952 E 952 (958)
Q Consensus 952 ~ 952 (958)
+
T Consensus 214 ~ 214 (222)
T PRK06953 214 Q 214 (222)
T ss_pred e
Confidence 3
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=228.48 Aligned_cols=256 Identities=16% Similarity=0.136 Sum_probs=176.3
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++|||||||||||+||+++|+++ +.+|+++.|..+... ..++...... ......++.++.+|+..
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~-G~~V~~~~r~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~Dl~d----- 71 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSK-GYEVHGIIRRSSNFN-TQRLDHIYID------PHPNKARMKLHYGDLSD----- 71 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHC-CCEEEEEeccccccc-ccchhhhccc------cccccCceEEEEecCCC-----
Confidence 4568999999999999999999976 568999888643210 0111111000 00112468889999863
Q ss_pred CcHHHHHHHhc--ccCEEEEcccccCcccC---hHHHHhhhHHHHHHHHHhhccCCCc-----cEEEEecccccCCCCCC
Q psy4557 398 KNQDEYVSLSY--EIDMIIHAAAFVNLILP---YNALYKSNVLATKNLIEFSFLNKIK-----SFHYVSTDSIYPSTSEN 467 (958)
Q Consensus 398 ~~~~~~~~l~~--~vd~IiH~AA~v~~~~~---~~~~~~~NV~gt~~ll~~a~~~~~k-----~~~~vST~~v~~~~~~~ 467 (958)
.+.+..+.. .+|+|||+||..+.... ......+|+.||.+|++.|...+++ +|+|+||.+|||....+
T Consensus 72 --~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~~ 149 (340)
T PLN02653 72 --ASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPPP 149 (340)
T ss_pred --HHHHHHHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCCC
Confidence 345555544 47999999998654322 2344578999999999999876654 89999999999965433
Q ss_pred CcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC-c-
Q psy4557 468 FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY-A- 544 (958)
Q Consensus 468 ~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~-~- 544 (958)
..|+ .+..+.+.|+.||+.+|+++...+ +.|++++..|+.++||+...... ....+..+++... .|. .
T Consensus 150 ~~E~-------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~-~~~~~~~~~~~~~-~~~~~~ 220 (340)
T PLN02653 150 QSET-------TPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENF-VTRKITRAVGRIK-VGLQKK 220 (340)
T ss_pred CCCC-------CCCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCccc-chhHHHHHHHHHH-cCCCCc
Confidence 3332 223466789999999999998754 56999999999999998532211 1112222232222 222 1
Q ss_pred ---CCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH-cCC
Q psy4557 545 ---PDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT-YGY 599 (958)
Q Consensus 545 ---P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~ 599 (958)
.+.+...+|++||++|++++.++.... +.+||+.+.+++++.++++.+.+ .|.
T Consensus 221 ~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~--~~~yni~~g~~~s~~e~~~~i~~~~g~ 277 (340)
T PLN02653 221 LFLGNLDASRDWGFAGDYVEAMWLMLQQEK--PDDYVVATEESHTVEEFLEEAFGYVGL 277 (340)
T ss_pred eEeCCCcceecceeHHHHHHHHHHHHhcCC--CCcEEecCCCceeHHHHHHHHHHHcCC
Confidence 223456899999999999999886542 46899999999999999998865 354
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=224.30 Aligned_cols=194 Identities=26% Similarity=0.297 Sum_probs=155.0
Q ss_pred HHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEEEEccccCCCccccC
Q psy4557 732 LVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEK 811 (958)
Q Consensus 732 ia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~ 811 (958)
+|++|+++|++|++++|+.++++ + ..++++|+++.++++++++++. +++|+||||||+...
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~-----~------~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~~----- 61 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT-----L------DGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPGT----- 61 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh-----h------hHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCCC-----
Confidence 58999999999999999976542 1 2356899999999999988774 789999999997531
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc---------------------------CCCCCCh
Q psy4557 812 YKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV---------------------------RPFAGLA 864 (958)
Q Consensus 812 ~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~---------------------------~~~~~~~ 864 (958)
+.|++++++|+.|++++++.++|+|. ..|+||++||.++. .+.++..
T Consensus 62 ---~~~~~~~~vN~~~~~~l~~~~~~~~~---~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (241)
T PRK12428 62 ---APVELVARVNFLGLRHLTEALLPRMA---PGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALAT 135 (241)
T ss_pred ---CCHHHhhhhchHHHHHHHHHHHHhcc---CCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCccc
Confidence 34899999999999999999999985 24899999999886 3567788
Q ss_pred hhhHHHHHHHHHHHHHH-HHhCCCCcEEEEEECCcccCCCCCCCCCh---hhhhhhccccCCCCCCHHHHHHHHHHHhcC
Q psy4557 865 VYTGTKYFIEGISGALR-QEVSDRNIKVTCIQAGDVKTELLSHSTDR---DVVDKYDISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la-~el~~~gIrv~~v~PG~v~T~~~~~~~~~---~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
.|++||+|+.+|+++++ .|++++|||||+|+||+|.|+|....... ..... ......++.+|+++|..++|++ +
T Consensus 136 ~Y~~sK~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~~-~~~~~~~~~~pe~va~~~~~l~-s 213 (241)
T PRK12428 136 GYQLSKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQERVDS-DAKRMGRPATADEQAAVLVFLC-S 213 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhhhHhhhh-cccccCCCCCHHHHHHHHHHHc-C
Confidence 99999999999999999 99999999999999999999996542211 10111 1112235679999999999976 5
Q ss_pred CCCccccceEec
Q psy4557 941 PSHSAVNSILIE 952 (958)
Q Consensus 941 ~~~~~i~~~~i~ 952 (958)
+...+++|..+.
T Consensus 214 ~~~~~~~G~~i~ 225 (241)
T PRK12428 214 DAARWINGVNLP 225 (241)
T ss_pred hhhcCccCcEEE
Confidence 555677777654
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=221.27 Aligned_cols=226 Identities=27% Similarity=0.371 Sum_probs=170.9
Q ss_pred eEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcHH
Q psy4557 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQD 401 (958)
Q Consensus 322 VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~~ 401 (958)
|||||||||||++|+++|++++ ..|+.+.|.......... ..++.++.+|+. +.+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~-----------------~~~~~~~~~dl~-------~~~ 55 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRSSNSESFEEK-----------------KLNVEFVIGDLT-------DKE 55 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESCSTGGHHHHH-----------------HTTEEEEESETT-------SHH
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Cccccccccccccccccc-----------------cceEEEEEeecc-------ccc
Confidence 7999999999999999999775 457788887664422111 127888999987 346
Q ss_pred HHHHHhcc--cCEEEEcccccC---cccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCccccccc
Q psy4557 402 EYVSLSYE--IDMIIHAAAFVN---LILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQEDYTVA 475 (958)
Q Consensus 402 ~~~~l~~~--vd~IiH~AA~v~---~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~~~~~ 475 (958)
.+..+... +|+|||+||... .......+...|+.++++++++|.+.++++|+|+||.++|+... .++.|+.+.
T Consensus 56 ~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~~~~- 134 (236)
T PF01370_consen 56 QLEKLLEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDEDSPI- 134 (236)
T ss_dssp HHHHHHHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETTSGC-
T ss_pred cccccccccCceEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 67666654 599999999863 12455677889999999999999988889999999999998762 233333221
Q ss_pred CcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC---cCCCCCcC
Q psy4557 476 DFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY---APDIDWYL 551 (958)
Q Consensus 476 ~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~---~P~~~~~~ 551 (958)
.+.+.|+.+|+.+|++++... +.|++++++||+++||+. ....+...++..++..+..-.. ..+.+..+
T Consensus 135 ------~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (236)
T PF01370_consen 135 ------NPLSPYGASKRAAEELLRDYAKKYGLRVTILRPPNVYGPG-NPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVR 207 (236)
T ss_dssp ------CHSSHHHHHHHHHHHHHHHHHHHHTSEEEEEEESEEESTT-SSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEE
T ss_pred ------cccccccccccccccccccccccccccccccccccccccc-ccccccccccchhhHHhhcCCcccccCCCCCcc
Confidence 345679999999999998765 459999999999999998 2222334456666666554331 22345779
Q ss_pred CcccHHHHHHHHHHHhcCcCCCCceEEec
Q psy4557 552 EFTPVDFLTKSLVQLTTNVNNANKIYNFI 580 (958)
Q Consensus 552 ~~~pVD~va~aiv~l~~~~~~~~~v~h~~ 580 (958)
+|++||++|++++.++.+....+.+||++
T Consensus 208 ~~i~v~D~a~~~~~~~~~~~~~~~~yNig 236 (236)
T PF01370_consen 208 DFIHVDDLAEAIVAALENPKAAGGIYNIG 236 (236)
T ss_dssp EEEEHHHHHHHHHHHHHHSCTTTEEEEES
T ss_pred ceEEHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence 99999999999999998877678999984
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=229.31 Aligned_cols=197 Identities=23% Similarity=0.246 Sum_probs=155.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.++||+++|||||+|||+++|++|+++|++|++++|+.+++++.. ......+..+.+|+++++++.+. ++
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~---~~~~~~v~~v~~Dvsd~~~v~~~-------l~ 244 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEI---NGEDLPVKTLHWQVGQEAALAEL-------LE 244 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---hhcCCCeEEEEeeCCCHHHHHHH-------hC
Confidence 468999999999999999999999999999999999877654332 22223466788999998876543 46
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC---CcEEEEecCccCcCCCCCChhhhHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRR---PGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~---~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
++|++|||||+... .+.+.++|++++++|+.|++.+++.++|.|.+.+. ++.+|++|| ++. ..+..+.|++|
T Consensus 245 ~IDiLInnAGi~~~---~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss-a~~-~~~~~~~Y~AS 319 (406)
T PRK07424 245 KVDILIINHGINVH---GERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE-AEV-NPAFSPLYELS 319 (406)
T ss_pred CCCEEEECCCcCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc-ccc-cCCCchHHHHH
Confidence 89999999998543 36788999999999999999999999999975432 356777765 343 33556789999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|+|+.+|+. ++++. .++.|..+.||+++|+|.. ...++||++|+.+++++.++..
T Consensus 320 KaAl~~l~~-l~~~~--~~~~I~~i~~gp~~t~~~~----------------~~~~spe~vA~~il~~i~~~~~ 374 (406)
T PRK07424 320 KRALGDLVT-LRRLD--APCVVRKLILGPFKSNLNP----------------IGVMSADWVAKQILKLAKRDFR 374 (406)
T ss_pred HHHHHHHHH-HHHhC--CCCceEEEEeCCCcCCCCc----------------CCCCCHHHHHHHHHHHHHCCCC
Confidence 999999985 55443 4677788899999998621 1247899999999999877655
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=222.11 Aligned_cols=224 Identities=21% Similarity=0.230 Sum_probs=165.3
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||+|++|+++|+++ +.+|+++.|. .+|+. +.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r~---------------------------------~~d~~-------~~ 39 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-GRVVVALTSS---------------------------------QLDLT-------DP 39 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeCCc---------------------------------ccCCC-------CH
Confidence 4899999999999999999976 4688888773 13332 23
Q ss_pred HHHHHHhcc--cCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCcccccc
Q psy4557 401 DEYVSLSYE--IDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQEDYTV 474 (958)
Q Consensus 401 ~~~~~l~~~--vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~~~~ 474 (958)
+.......+ +|+|||+|+..+... .....+.+|+.|+.++++.|...+ .+|+|+||.+||+... .++.|+.
T Consensus 40 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~Ss~~vy~~~~~~~~~E~~-- 116 (287)
T TIGR01214 40 EALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHG-ARLVHISTDYVFDGEGKRPYREDD-- 116 (287)
T ss_pred HHHHHHHHhCCCCEEEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEeeeeeecCCCCCCCCCCC--
Confidence 445544443 599999999765432 234567899999999999998776 4899999999997532 2233332
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCC-CCcCCc
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI-DWYLEF 553 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~-~~~~~~ 553 (958)
+..+.+.|+.||+.+|+++..+ |++++|+||++|||+... .+++..+++.+..-+.++-. +...++
T Consensus 117 -----~~~~~~~Y~~~K~~~E~~~~~~---~~~~~ilR~~~v~G~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (287)
T TIGR01214 117 -----ATNPLNVYGQSKLAGEQAIRAA---GPNALIVRTSWLYGGGGG-----RNFVRTMLRLAGRGEELRVVDDQIGSP 183 (287)
T ss_pred -----CCCCcchhhHHHHHHHHHHHHh---CCCeEEEEeeecccCCCC-----CCHHHHHHHHhhcCCCceEecCCCcCC
Confidence 1245678999999999999765 789999999999998732 12344455544433322211 235789
Q ss_pred ccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCc
Q psy4557 554 TPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNI 601 (958)
Q Consensus 554 ~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~ 601 (958)
++||+++++++.++......+.+||++++.++++.|+++.+.+. |.+.
T Consensus 184 v~v~Dva~a~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~ 232 (287)
T TIGR01214 184 TYAKDLARVIAALLQRLARARGVYHLANSGQCSWYEFAQAIFEEAGADG 232 (287)
T ss_pred cCHHHHHHHHHHHHhhccCCCCeEEEECCCCcCHHHHHHHHHHHhCccc
Confidence 99999999999988765456789999999999999999999764 5543
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=225.47 Aligned_cols=247 Identities=19% Similarity=0.195 Sum_probs=174.1
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+++|||||||||||+||++.|++++ .+|+++.|....... ....+. ...++.++.+|++.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~---~~~~~~----------~~~~~~~~~~Dl~~------ 63 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYSLDPPTSPN---LFELLN----------LAKKIEDHFGDIRD------ 63 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCC-CEEEEEeCCCccchh---HHHHHh----------hcCCceEEEccCCC------
Confidence 4689999999999999999999764 678888876543211 111110 01356778889863
Q ss_pred cHHHHHHHhc--ccCEEEEcccccCcccC---hHHHHhhhHHHHHHHHHhhccCC-CccEEEEecccccCCCCC--CCcc
Q psy4557 399 NQDEYVSLSY--EIDMIIHAAAFVNLILP---YNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDSIYPSTSE--NFQE 470 (958)
Q Consensus 399 ~~~~~~~l~~--~vd~IiH~AA~v~~~~~---~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~v~~~~~~--~~~e 470 (958)
.+.+..+.. ++|+|||+||......+ ......+|+.|+.++++.|...+ .++|+|+||.++|+.... ++.|
T Consensus 64 -~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e 142 (349)
T TIGR02622 64 -AAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRE 142 (349)
T ss_pred -HHHHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCcc
Confidence 455666655 47999999997543322 23567899999999999987655 679999999999985321 1222
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHhh--------CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhC
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ--------MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLG 542 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~--------~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g 542 (958)
+ .+..+.+.|+.||.++|+++...++ .|++++++||+++||+.. +....++..+++.+..-.
T Consensus 143 ~-------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~---~~~~~~~~~~~~~~~~g~ 212 (349)
T TIGR02622 143 T-------DPLGGHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGD---WAEDRLIPDVIRAFSSNK 212 (349)
T ss_pred C-------CCCCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCc---chhhhhhHHHHHHHhcCC
Confidence 1 2234567899999999999976432 289999999999999864 222234556666655422
Q ss_pred C--cCCCCCcCCcccHHHHHHHHHHHhcCc----CCCCceEEecCC--CCCCHHHHHHHHHH
Q psy4557 543 Y--APDIDWYLEFTPVDFLTKSLVQLTTNV----NNANKIYNFINT--NPIHIKTLVSVLNT 596 (958)
Q Consensus 543 ~--~P~~~~~~~~~pVD~va~aiv~l~~~~----~~~~~v~h~~n~--~~~~~~~l~~~l~~ 596 (958)
. +++.....+|++||+++++++.++... ...+.+||+.+. .+.+..++++.+.+
T Consensus 213 ~~~~~~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~ 274 (349)
T TIGR02622 213 IVIIRNPDATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALE 274 (349)
T ss_pred CeEECCCCcccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHH
Confidence 2 223456789999999999999776431 123579999973 68999999987754
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-22 Score=222.20 Aligned_cols=254 Identities=20% Similarity=0.226 Sum_probs=174.3
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||+||+++|+++ +.+|+++.|...... ..+.. +... ...++.++.+|++. .
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~~~~~~~~--~~~~~-~~~~--------~~~~~~~~~~Dl~d-------~ 62 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN-GHDVVILDNLCNSKR--SVLPV-IERL--------GGKHPTFVEGDIRN-------E 62 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHC-CCeEEEEecCCCchH--hHHHH-HHHh--------cCCCceEEEccCCC-------H
Confidence 6899999999999999999976 467887765432211 11111 1100 01356778899864 3
Q ss_pred HHHHHHhc--ccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcccccc
Q psy4557 401 DEYVSLSY--EIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYTV 474 (958)
Q Consensus 401 ~~~~~l~~--~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~~ 474 (958)
+.+..+.. ++|+|||+|+...... ...++..+|+.|+.+|++.|+..++++|+|+||.++|+.... ++.|+.+.
T Consensus 63 ~~~~~~~~~~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~~~ 142 (338)
T PRK10675 63 ALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESFPT 142 (338)
T ss_pred HHHHHHHhcCCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccccCC
Confidence 44554443 6999999999765322 234567899999999999999888899999999999985322 23332211
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhh--CCCCEEEEecCceeccCCCCCcCh------hHHHHHHHHHHHHhCC---
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQ--MGLPVSIVRCGNIGGSLEFKNWNL------VDLNLYILKAITRLGY--- 543 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~--~glp~~I~R~g~i~G~~~~g~~n~------~d~~~~l~~~~~~~g~--- 543 (958)
..+.++|+.||..+|+++..+.+ .+++++|+|++++||+..++.+.. ..++..+.+. ...+.
T Consensus 143 ------~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~ 215 (338)
T PRK10675 143 ------GTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQV-AVGRRDSL 215 (338)
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHH-HhcCCCce
Confidence 13467899999999999987653 379999999999999865443321 1223322222 21111
Q ss_pred ------cC--CCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCCCHHHHHHHHHHc-CCC
Q psy4557 544 ------AP--DIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPIHIKTLVSVLNTY-GYN 600 (958)
Q Consensus 544 ------~P--~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~ 600 (958)
+| +....++|++||++|++++.++... ...+++||+.+++++++.|+.+.+.+. |.+
T Consensus 216 ~~~~~~~~~~~g~~~~~~v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~ 283 (338)
T PRK10675 216 AIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKP 283 (338)
T ss_pred EEeCCcCCCCCCcEEEeeEEHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCC
Confidence 11 2335689999999999999877542 223579999999999999999998763 544
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=225.99 Aligned_cols=260 Identities=17% Similarity=0.200 Sum_probs=175.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||+||+++|+++ +.+|++++|.... .+.+.+ +..++.. .....++.++.+|++.
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~r~~~~---~~~l~~-l~~~~~~---~~~~~~~~~v~~Dl~d----- 118 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAVDTQED---KEKLRE-MEMFGEM---GRSNDGIWTVMANLTE----- 118 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEeCCHHH---HHHHHH-Hhhhccc---cccCCceEEEEcCCCC-----
Confidence 5679999999999999999999976 4688887875321 122221 1111100 0011357888999874
Q ss_pred CcHHHHHHHhcccCEEEEcccccCccc--Ch-HHHHhhhHHHHHHHHHhhccC-CCccEEEEecc--cccCCC--CC---
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLIL--PY-NALYKSNVLATKNLIEFSFLN-KIKSFHYVSTD--SIYPST--SE--- 466 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~~--~~-~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~--~v~~~~--~~--- 466 (958)
.+.+..+...+|.|||+|+.++... .+ ..+...|+.||.++++.|... ++++|+|+||. .+|+.. ..
T Consensus 119 --~~~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~ 196 (367)
T PLN02686 119 --PESLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPP 196 (367)
T ss_pred --HHHHHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCc
Confidence 3556667778999999999875433 12 456778999999999999875 78999999996 477631 11
Q ss_pred CCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH-hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC
Q psy4557 467 NFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA-GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP 545 (958)
Q Consensus 467 ~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a-~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P 545 (958)
.+.|+. ......+..+.+.|+.||..+|+++... .+.|++++++||++|||+..... +.. .+..++ .|..+
T Consensus 197 ~i~E~~-~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~-~~~-~~~~~~-----~g~~~ 268 (367)
T PLN02686 197 VIDEES-WSDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRR-NST-ATIAYL-----KGAQE 268 (367)
T ss_pred ccCCCC-CCChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCC-CCh-hHHHHh-----cCCCc
Confidence 122221 1111122335568999999999999764 45699999999999999975322 111 111122 23222
Q ss_pred CC-CCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCCCHHHHHHHHHHc-CCCc
Q psy4557 546 DI-DWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPIHIKTLVSVLNTY-GYNI 601 (958)
Q Consensus 546 ~~-~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~ 601 (958)
-. +...+|++||+++++++.+.... ...+.+| +++..++++.|+++.+.+. |.++
T Consensus 269 ~~g~g~~~~v~V~Dva~A~~~al~~~~~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~ 327 (367)
T PLN02686 269 MLADGLLATADVERLAEAHVCVYEAMGNKTAFGRY-ICFDHVVSREDEAEELARQIGLPI 327 (367)
T ss_pred cCCCCCcCeEEHHHHHHHHHHHHhccCCCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCC
Confidence 22 23457999999999999887642 2345678 7888999999999998764 5443
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=247.44 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=98.5
Q ss_pred cHHHHHHHHHHh--CCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 14 ALHYMFRNQAKR--TPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 14 ~l~~~~~~~a~~--~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
++.++|.+++++ +||++|+++ ++.+||+||+++++++|++|.+.|+++||+|+|+++|+++++++++||+++|+++
T Consensus 5 ~~~~~~~~~a~~~~~pd~~a~~~--~~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~ 82 (705)
T PRK06060 5 NLAGLLAEQASEAGWYDRPAFYA--ADVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMA 82 (705)
T ss_pred CHHHHHHHHHhhccCCCceEEEe--cCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 578889888876 799999975 3479999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGE 120 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~ 120 (958)
||+||.++.+++.+++++++++++|++..
T Consensus 83 vpi~p~~~~~~l~~~l~~~~~~~vi~~~~ 111 (705)
T PRK06060 83 FLANPELHRDDHALAARNTEPALVVTSDA 111 (705)
T ss_pred EecCCCCCHHHHHHHHhcCCCcEEEEchH
Confidence 99999999999999999999999998754
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-22 Score=218.96 Aligned_cols=233 Identities=18% Similarity=0.178 Sum_probs=159.6
Q ss_pred EEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcHHH
Q psy4557 323 LLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQDE 402 (958)
Q Consensus 323 llTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~~~ 402 (958)
||||||||||++|++.|+..+. .|+.+.+. ..+|+. +.+.
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~-~v~~~~~~--------------------------------~~~Dl~-------~~~~ 40 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF-TNLVLRTH--------------------------------KELDLT-------RQAD 40 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC-cEEEeecc--------------------------------ccCCCC-------CHHH
Confidence 6999999999999999987653 34433211 025554 3344
Q ss_pred HHHHhc--ccCEEEEcccccCc----ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCccccccc
Q psy4557 403 YVSLSY--EIDMIIHAAAFVNL----ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQEDYTVA 475 (958)
Q Consensus 403 ~~~l~~--~vd~IiH~AA~v~~----~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~~~~~ 475 (958)
+..+.+ ++|+||||||..+. ......+.+.|+.||.+|++.|.+.++++|+|+||..||+... .+..|+....
T Consensus 41 l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~ 120 (306)
T PLN02725 41 VEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLT 120 (306)
T ss_pred HHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhcc
Confidence 555433 58999999997542 1234467789999999999999988889999999999998542 2333332111
Q ss_pred CcCCCCCCCC-ChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHH---HHhCCc----C-
Q psy4557 476 DFDDFMTTTS-GYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI---TRLGYA----P- 545 (958)
Q Consensus 476 ~~~~~~~~~~-gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~---~~~g~~----P- 545 (958)
.+..+.+ .|+.||..+|++++.+. ..|++++++||+++||+..........++..+++.+ ...|.. +
T Consensus 121 ---~~~~p~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 197 (306)
T PLN02725 121 ---GPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWG 197 (306)
T ss_pred ---CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcC
Confidence 1123333 49999999999887654 459999999999999997532111111223333221 122221 1
Q ss_pred CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH-cCC
Q psy4557 546 DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT-YGY 599 (958)
Q Consensus 546 ~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~ 599 (958)
+.....+|++||+++++++.++.... ....||+.++.++++.|+.+.+.+ .|.
T Consensus 198 ~g~~~~~~i~v~Dv~~~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~~~ 251 (306)
T PLN02725 198 SGSPLREFLHVDDLADAVVFLMRRYS-GAEHVNVGSGDEVTIKELAELVKEVVGF 251 (306)
T ss_pred CCCeeeccccHHHHHHHHHHHHhccc-cCcceEeCCCCcccHHHHHHHHHHHhCC
Confidence 22345799999999999998876542 346789999999999999999875 354
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=218.94 Aligned_cols=233 Identities=18% Similarity=0.158 Sum_probs=166.7
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||+|+||+++|+++ +.+|+|++|..+.. ..+. ...++++.||+.. .
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~-g~~V~~l~R~~~~~---~~l~---------------~~~v~~v~~Dl~d-------~ 55 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDE-GYQVRCLVRNLRKA---SFLK---------------EWGAELVYGDLSL-------P 55 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHC-CCeEEEEEcChHHh---hhHh---------------hcCCEEEECCCCC-------H
Confidence 6999999999999999999976 47899999963211 1110 1257889999874 3
Q ss_pred HHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCCC
Q psy4557 401 DEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDF 480 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~ 480 (958)
+.+....+++|+|||+++.. ......+...|+.|+.++++.|++.++++|+|+||.++..
T Consensus 56 ~~l~~al~g~d~Vi~~~~~~--~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~------------------ 115 (317)
T CHL00194 56 ETLPPSFKGVTAIIDASTSR--PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ------------------ 115 (317)
T ss_pred HHHHHHHCCCCEEEECCCCC--CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc------------------
Confidence 55667778999999987632 2233456788999999999999999999999999864311
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHH
Q psy4557 481 MTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLT 560 (958)
Q Consensus 481 ~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va 560 (958)
.+...|..+|+.+|+++. +.|++++|+||+.+++..- ..+...++.. ....++..+..+++++|+++|
T Consensus 116 -~~~~~~~~~K~~~e~~l~---~~~l~~tilRp~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~i~v~Dva 183 (317)
T CHL00194 116 -YPYIPLMKLKSDIEQKLK---KSGIPYTIFRLAGFFQGLI------SQYAIPILEK--QPIWITNESTPISYIDTQDAA 183 (317)
T ss_pred -cCCChHHHHHHHHHHHHH---HcCCCeEEEeecHHhhhhh------hhhhhhhccC--CceEecCCCCccCccCHHHHH
Confidence 012358999999999875 3589999999998775310 0000001100 000112223567999999999
Q ss_pred HHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHH
Q psy4557 561 KSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFH 611 (958)
Q Consensus 561 ~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~ 611 (958)
++++.+...+...+++||+.+|..+++.|+++.+.+. |.+...++...|.-
T Consensus 184 ~~~~~~l~~~~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~ 235 (317)
T CHL00194 184 KFCLKSLSLPETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLL 235 (317)
T ss_pred HHHHHHhcCccccCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHH
Confidence 9999988766567899999999999999999999764 76555444444444
|
|
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-23 Score=250.86 Aligned_cols=370 Identities=22% Similarity=0.288 Sum_probs=254.4
Q ss_pred cccCCCCCccccccCCCCCcccccc--------ccCCCCCHHHHHHHHHHHHHcCCCCCCCCCchhhcCccHHHHHHHHH
Q psy4557 172 HLSILKSSGKLNKEELPKLDSIAQI--------ELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGHSLTAALCIS 243 (958)
Q Consensus 172 ~lP~~t~nGKvDr~~L~~~~~~~~~--------~~~~~~~~~e~~l~~iw~~vL~~~~i~~~~~FF~lGgdSL~a~~l~~ 243 (958)
++|++ +|||||+++|......... ..+...+..+..+...|-++.+...+++++|||++||||+.++++..
T Consensus 559 ~vPl~-~~GKvDkkaL~~~~s~~~~~~~s~~~~~~~~~~~~~~~~v~d~~l~~~~~~~~s~d~~fF~lGgdSi~av~~~~ 637 (1032)
T KOG1178|consen 559 KVPLN-PNGKVDKKALLEYNSKLTNVQDSSLSEAKDSILSLPLSTVFDLWLSIGSLAIVSPDSSFFQLGGDSISAVRLSG 637 (1032)
T ss_pred hCCcC-CCCCcChhhhhhhhhhhcccccceeeccccccccccccchhhhhhhhcCccccCCCcchhhhcchhHHHHHHHH
Confidence 78995 9999999999874322111 12234556778899999999986678899999999999999999999
Q ss_pred HHHHHhCCCCChHHHhcCCcHHHHHHHHhccccccccc-ccchhhchhhhhhhhhhhhhhhhhh---hhhcccccCcccc
Q psy4557 244 KMNEELSLNLSIKDLFAHPTVQEMAALLENKSNETLKL-DLIHEIDVNSYKSLDENLNVRVQCF---WKSVQLNSNKLKY 319 (958)
Q Consensus 244 ~i~~~~~~~l~~~~l~~~pTi~~la~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~ 319 (958)
.+++.+.++.++..+|..+|+..+...+........+. ...........+. ...+...+... .......-.+...
T Consensus 638 ~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~ 716 (1032)
T KOG1178|consen 638 LLRKKGYVEGPLGLIFKLLTIVNLESGIIRIKSQEKSSSKLNHKIELKNLKD-RTQLSDTIPKSSPLPLNLSIEVKKSEL 716 (1032)
T ss_pred hhhhhheeccccccccchhhHHHHHHHHhhhhhhccchhhhhhhhhhccccc-hhhHhhhccccccCCCCCccccccccc
Confidence 99999999999999999999999988775533211110 0000000000000 00111111110 0000000000111
Q ss_pred Cc--eEEeccccchHHHHHHHHhcCCC----CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCC
Q psy4557 320 GN--VLLTGVTGYLGIHLLQKFLVDTK----CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLE 393 (958)
Q Consensus 320 ~~--VllTGaTGflGs~ll~~LL~~~~----~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~ 393 (958)
.+ +++||.+||+|...+..++.... ..+.|++|+.+.++...|...+...|+.+. +...-++..+.+++++.
T Consensus 717 ~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~~~~~~~a~~e~a~~~~~~~~i~~~~~~~--e~~~i~~~~~~~~~~~~ 794 (1032)
T KOG1178|consen 717 LTAYVFLTGYTGYLGRRKLSNLVKLSNFFYIILVFALVRASSEEASGGRLQDAIQIYGVLN--EELLINIIVHLIDLSKS 794 (1032)
T ss_pred cccceeeeeccceehhhhhhhhhhhhhhhheeeeEEEeccCCchhhccchhchhhhhhhcc--ccccceeeeehhhhhhh
Confidence 22 89999999999999999886543 358899999998888888888888787765 34456788899999999
Q ss_pred CCCCCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccc-----cCCCCCCC
Q psy4557 394 MLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSI-----YPSTSENF 468 (958)
Q Consensus 394 ~lGL~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v-----~~~~~~~~ 468 (958)
.+|+.+ ..|..+...++.++|+++.+++..+|......|+.+|.+.+.++.... +.++++|+..- |.....
T Consensus 795 ~~~~~~-~l~~~l~~~~~~~i~~~~~~~~v~~~t~~~~~~~~~~~~~~~l~~~l~-~~~~~~s~~~~~~~~~y~~~~s-- 870 (1032)
T KOG1178|consen 795 LFGLED-TLWNKLQEPVSIVIHNGALVHEVLRYTELRYPNVIGTITVLPLYSFLK-KKPKDISLSGFQLDEEYYSNLS-- 870 (1032)
T ss_pred hhcccc-hhhhccccCcceecccccceeeechhhccCCceeeeeeeeeeeecccc-ccceeEEeeeeEEEEEeccCch--
Confidence 999987 789999999999999999999999999999999999999999887655 45555554221 111100
Q ss_pred cccccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCC-EEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCC
Q psy4557 469 QEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLP-VSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI 547 (958)
Q Consensus 469 ~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp-~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~ 547 (958)
.....|+.++..++.-...-...|.+ ..+.||+.+.|.. |..+..++++++.++++.+|..|+.
T Consensus 871 -------------~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~~~~--~~~~~~~f~~~f~~~ai~~~~~~~~ 935 (1032)
T KOG1178|consen 871 -------------RKLASAGAEGIAASDGLKKISVMGHSLIRNVRPGYVLGNS--GSINTDDFLTRFVKGALDFGKRPNI 935 (1032)
T ss_pred -------------hhhhhccccccccccccccccccccchhhhccceeeecCC--CcchhhhHHhhhhhcccccccCCCC
Confidence 00011222222221111110000000 1178999999988 8889999999999999999999999
Q ss_pred CCcCCcccHHHHHHHHH
Q psy4557 548 DWYLEFTPVDFLTKSLV 564 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv 564 (958)
+..++.+|.++.++.+.
T Consensus 936 ~~~~~~~~~~~~~~~~~ 952 (1032)
T KOG1178|consen 936 DESLNQLPRDHTASVAD 952 (1032)
T ss_pred Ccchheechhhceeeec
Confidence 87799999999876533
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=257.54 Aligned_cols=183 Identities=20% Similarity=0.237 Sum_probs=160.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHc-CCeEEEEecCh-------------------------------------------
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTL-GAKVVAVARRI------------------------------------------- 750 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~-Ga~Vi~~~r~~------------------------------------------- 750 (958)
+||++|||||++|||+++|++|+++ |++|++++|+.
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 6899999999999999999999998 69999999982
Q ss_pred ----hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhH
Q psy4557 751 ----DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIK 826 (958)
Q Consensus 751 ----~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~ 826 (958)
..+++..+.+...+.++.++.||++|.++++++++++.+. ++||+||||||+.....+.+.+.++|+++|++|+.
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~ 2154 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVD 2154 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHH
Confidence 0111223334455677889999999999999999999877 68999999999988888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCC
Q psy4557 827 GVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLS 905 (958)
Q Consensus 827 g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~ 905 (958)
|++.+++++.+.+. ++||++||++|..+.++++.|+++|+++++|++.++.++. ++||++|+||+++|+|..
T Consensus 2155 G~~~Ll~al~~~~~-----~~IV~~SSvag~~G~~gqs~YaaAkaaL~~la~~la~~~~--~irV~sI~wG~wdtgm~~ 2226 (2582)
T TIGR02813 2155 GLLSLLAALNAENI-----KLLALFSSAAGFYGNTGQSDYAMSNDILNKAALQLKALNP--SAKVMSFNWGPWDGGMVN 2226 (2582)
T ss_pred HHHHHHHHHHHhCC-----CeEEEEechhhcCCCCCcHHHHHHHHHHHHHHHHHHHHcC--CcEEEEEECCeecCCccc
Confidence 99999888876542 5899999999999999999999999999999999999874 599999999999999864
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1430|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=212.32 Aligned_cols=315 Identities=19% Similarity=0.212 Sum_probs=199.6
Q ss_pred cCceEEeccccchHHHHHHHHhcCC-CCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDT-KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~-~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..+|+||||+||||.||+.+|+++. ..+|+................ .....++.++.+|+...
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~------------~~~~~~v~~~~~D~~~~---- 67 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELT------------GFRSGRVTVILGDLLDA---- 67 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhh------------cccCCceeEEecchhhh----
Confidence 4689999999999999999999887 445665554432111000000 01256888899998632
Q ss_pred CcHHHHHHHhcccCEEEEcccccC--ccc-ChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVN--LIL-PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTV 474 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~--~~~-~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~ 474 (958)
.........+ .|+||||... +.. ..+...++||.||+++++.|.+.++++|+|+||.+|..........+++.
T Consensus 68 ---~~i~~a~~~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~ 143 (361)
T KOG1430|consen 68 ---NSISNAFQGA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESL 143 (361)
T ss_pred ---hhhhhhccCc-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCC
Confidence 3334445667 8888888642 333 36678899999999999999999999999999999986543311111111
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC----CCCC
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP----DIDW 549 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P----~~~~ 549 (958)
+.+....+.|+.||..||+++.+|. ..++..+.+||..|||+.+.-. ...++. ....|... +.+.
T Consensus 144 ---p~p~~~~d~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~------~~~i~~-~~~~g~~~f~~g~~~~ 213 (361)
T KOG1430|consen 144 ---PYPLKHIDPYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRL------LPKIVE-ALKNGGFLFKIGDGEN 213 (361)
T ss_pred ---CCccccccccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccc------cHHHHH-HHHccCceEEeecccc
Confidence 1223456799999999999999988 4589999999999999976322 222222 23333322 2344
Q ss_pred cCCcccHHHHHHHHHHHh-----cCcCCCCceEEecCCCCCC-HHHHHHHHHHcCCCcc-ccChHHHHHH----Hhcc--
Q psy4557 550 YLEFTPVDFLTKSLVQLT-----TNVNNANKIYNFINTNPIH-IKTLVSVLNTYGYNIK-TVPYEKWFHK----LNKR-- 616 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~-----~~~~~~~~v~h~~n~~~~~-~~~l~~~l~~~g~~~~-~v~~~eW~~~----~~~~-- 616 (958)
.-+|++++-|+-+.+... ..+...|+.|++.+..++. |..+...+...|+... .+.+.-|+.. +...
T Consensus 214 ~~~~~~~~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~ 293 (361)
T KOG1430|consen 214 LNDFTYGENVAWAHILAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVY 293 (361)
T ss_pred ccceEEechhHHHHHHHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHH
Confidence 578999998888887654 2345578999999988885 4555555566788776 3333333332 1000
Q ss_pred --CC-CchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCC-HHHHHHHHHH
Q psy4557 617 --EL-SEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETN-DHTVRQFLDN 670 (958)
Q Consensus 617 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~-~~~~~~~~~~ 670 (958)
.. -.+.+... .-........|++.+++..|. -+|.++ .+.+.+++.+
T Consensus 294 ~~l~p~~p~lt~~---~v~~~~~~~~f~~~kA~~~lg----Y~P~~~~~e~~~~~~~~ 344 (361)
T KOG1430|consen 294 FLLRPYQPILTRF---RVALLGVTRTFSIEKAKRELG----YKPLVSLEEAIQRTIHW 344 (361)
T ss_pred HhccCCCCCcChh---heeeeccccccCHHHHHHhhC----CCCcCCHHHHHHHHHHH
Confidence 00 01111000 001222456677887776655 355444 3566666663
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=215.72 Aligned_cols=270 Identities=21% Similarity=0.231 Sum_probs=163.5
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+||||||+||||++|.+.|.. .+..|++..|. .+.|.+.
T Consensus 2 riLI~GasG~lG~~l~~~l~~-~~~~v~~~~r~----------------------------------------~~dl~d~ 40 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKE-RGYEVIATSRS----------------------------------------DLDLTDP 40 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTT-TSEEEEEESTT----------------------------------------CS-TTSH
T ss_pred EEEEECCCCHHHHHHHHHHhh-CCCEEEEeCch----------------------------------------hcCCCCH
Confidence 699999999999999988775 44567776543 1222333
Q ss_pred HHHHHHhc--ccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCcccccc
Q psy4557 401 DEYVSLSY--EIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQEDYTV 474 (958)
Q Consensus 401 ~~~~~l~~--~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~~~~ 474 (958)
+....+.. .+|+||||||..+... ..+..+.+|+.++.+|.++|...+ .+++|+||..||+... .++.|++
T Consensus 41 ~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~-~~li~~STd~VFdG~~~~~y~E~d-- 117 (286)
T PF04321_consen 41 EAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERG-ARLIHISTDYVFDGDKGGPYTEDD-- 117 (286)
T ss_dssp HHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SSTSSSB-TTS--
T ss_pred HHHHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcC-CcEEEeeccEEEcCCcccccccCC--
Confidence 45545433 5899999999876432 455677899999999999999877 5999999999996542 2344442
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCC-CCCcCCc
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPD-IDWYLEF 553 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~-~~~~~~~ 553 (958)
...|.+.||+||+.+|+.+.+... ...|+|++.+||... ..++..+++...+-+.+.- .++....
T Consensus 118 -----~~~P~~~YG~~K~~~E~~v~~~~~---~~~IlR~~~~~g~~~------~~~~~~~~~~~~~~~~i~~~~d~~~~p 183 (286)
T PF04321_consen 118 -----PPNPLNVYGRSKLEGEQAVRAACP---NALILRTSWVYGPSG------RNFLRWLLRRLRQGEPIKLFDDQYRSP 183 (286)
T ss_dssp ---------SSHHHHHHHHHHHHHHHH-S---SEEEEEE-SEESSSS------SSHHHHHHHHHHCTSEEEEESSCEE--
T ss_pred -----CCCCCCHHHHHHHHHHHHHHHhcC---CEEEEecceecccCC------CchhhhHHHHHhcCCeeEeeCCceeCC
Confidence 235678999999999999987432 799999999999832 2355566665544443322 2356788
Q ss_pred ccHHHHHHHHHHHhcCcC---CCCceEEecCCCCCCHHHHHHHHHHc-CCCc---cccChHHHHHHHhccCCCchhHHHH
Q psy4557 554 TPVDFLTKSLVQLTTNVN---NANKIYNFINTNPIHIKTLVSVLNTY-GYNI---KTVPYEKWFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 554 ~pVD~va~aiv~l~~~~~---~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~---~~v~~~eW~~~~~~~~~~~~~~~~~ 626 (958)
++|+++|++|..++.+.. ....+||+.++..+++-|+...+.+. |.+. +.++..++..
T Consensus 184 ~~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~--------------- 248 (286)
T PF04321_consen 184 TYVDDLARVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPR--------------- 248 (286)
T ss_dssp EEHHHHHHHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTT---------------
T ss_pred EEHHHHHHHHHHHHHhcccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCC---------------
Confidence 999999999999986542 23579999999999999999877653 4433 2232221100
Q ss_pred hhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHH
Q psy4557 627 RNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNL 671 (958)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~ 671 (958)
...-.....+|+++.++. .|++.|+. ++.|+.+++.+
T Consensus 249 ----~~~rp~~~~L~~~kl~~~---~g~~~~~~-~~~l~~~~~~~ 285 (286)
T PF04321_consen 249 ----AAPRPRNTSLDCRKLKNL---LGIKPPPW-REGLEELVKQY 285 (286)
T ss_dssp ----SSGS-SBE-B--HHHHHC---TTS---BH-HHHHHHHHHHH
T ss_pred ----CCCCCCcccccHHHHHHc---cCCCCcCH-HHHHHHHHHHh
Confidence 000012345667666543 47888887 45666666543
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=210.93 Aligned_cols=227 Identities=19% Similarity=0.265 Sum_probs=163.6
Q ss_pred cCceEEeccccchHHHHHHHHhcCC-CCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDT-KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~-~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++|||||||||||++|+++|++++ ..+|+++.|..... ..+.+. . . ..++.++.+|++.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~---~~~~~~---~------~--~~~~~~v~~Dl~d----- 64 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQ---WEMQQK---F------P--APCLRFFIGDVRD----- 64 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHH---HHHHHH---h------C--CCcEEEEEccCCC-----
Confidence 4689999999999999999999875 35788888753221 112111 0 0 1468889999874
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTV 474 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~ 474 (958)
.+....+..++|+|||+||..+.. .+....+.+|+.|+.+++++|...++++|+|+||...+
T Consensus 65 --~~~l~~~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~~------------- 129 (324)
T TIGR03589 65 --KERLTRALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKAA------------- 129 (324)
T ss_pred --HHHHHHHHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC-------------
Confidence 456666777899999999975431 22345778999999999999998888899999985321
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC--cCC--
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY--APD-- 546 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~--~P~-- 546 (958)
.+.+.|+.||+.+|+++..+ ...|++++++|||+|+|+.. + ++..+.+. ...|. +|-
T Consensus 130 -------~p~~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~----~---~i~~~~~~-~~~~~~~~~i~~ 194 (324)
T TIGR03589 130 -------NPINLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG----S---VVPFFKSL-KEEGVTELPITD 194 (324)
T ss_pred -------CCCCHHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCC----C---cHHHHHHH-HHhCCCCeeeCC
Confidence 12457999999999998763 24699999999999999752 1 22333332 22232 332
Q ss_pred CCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 547 IDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 547 ~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
.....+|++||+++++++.+.... ..+++|+ ......++.++++.+.+
T Consensus 195 ~~~~r~~i~v~D~a~a~~~al~~~-~~~~~~~-~~~~~~sv~el~~~i~~ 242 (324)
T TIGR03589 195 PRMTRFWITLEQGVNFVLKSLERM-LGGEIFV-PKIPSMKITDLAEAMAP 242 (324)
T ss_pred CCceEeeEEHHHHHHHHHHHHhhC-CCCCEEc-cCCCcEEHHHHHHHHHh
Confidence 234578999999999999987653 2457784 44456899999988875
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=206.70 Aligned_cols=247 Identities=15% Similarity=0.119 Sum_probs=167.4
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|||||||||||+||+++|+++ +.+|++++|..+.....+.+.. . .....++.++.+|++.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~-G~~V~~~~R~~~~~~~~~~~~~----l------~~~~~~~~~~~~Dl~d------ 68 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSR-GYTVHAAVQKNGETEIEKEIRG----L------SCEEERLKVFDVDPLD------ 68 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEEcCchhhhHHHHHHh----c------ccCCCceEEEEecCCC------
Confidence 458999999999999999999976 4789988885432221111111 0 0012478888999874
Q ss_pred cHHHHHHHhcccCEEEEcccccCc-ccChHHHHhhhHHHHHHHHHhhccC-CCccEEEEecccccCCC--C----CCCcc
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNL-ILPYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSIYPST--S----ENFQE 470 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~-~~~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v~~~~--~----~~~~e 470 (958)
.+.+......+|.|+|+++.... ....+.++++|+.||.++++.|... ++++|+|+||.+++... . ..+.|
T Consensus 69 -~~~~~~~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E 147 (297)
T PLN02583 69 -YHSILDALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDE 147 (297)
T ss_pred -HHHHHHHHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCc
Confidence 35666777889999998765432 2224567889999999999998765 57899999998765311 1 11222
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCC-C
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI-D 548 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~-~ 548 (958)
+.. ............|+.||..+|+++.... +.|++++++||+.|+|+..... +. ++. +..+.. .
T Consensus 148 ~~~-~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~-~~------~~~-----~~~~~~~~ 214 (297)
T PLN02583 148 RSW-SDQNFCRKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQH-NP------YLK-----GAAQMYEN 214 (297)
T ss_pred ccC-CCHHHHhhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCc-hh------hhc-----CCcccCcc
Confidence 110 0000000112369999999999997654 5699999999999999875321 10 111 111111 2
Q ss_pred CcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 549 WYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 549 ~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
....++.||+||++++.+...+...+ .|.+.++....+.++.+++++.
T Consensus 215 ~~~~~v~V~Dva~a~~~al~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~ 262 (297)
T PLN02583 215 GVLVTVDVNFLVDAHIRAFEDVSSYG-RYLCFNHIVNTEEDAVKLAQML 262 (297)
T ss_pred cCcceEEHHHHHHHHHHHhcCcccCC-cEEEecCCCccHHHHHHHHHHh
Confidence 34579999999999999887655444 7999987766678899999875
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-20 Score=212.53 Aligned_cols=216 Identities=12% Similarity=0.164 Sum_probs=162.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC-----C----CcEEEEEecCCCHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-----P----GSIIVKKLDVTIENDVKK 782 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~-----~----~~~~~~~~Dvs~~~~v~~ 782 (958)
++.+||+++||||+||||++++++|+++|++|++++|+.++++.+.+.+.+. + .++.++.+|+++.+++.+
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 4568999999999999999999999999999999999999888777655321 1 347789999999887654
Q ss_pred HHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-CCCC
Q psy4557 783 VVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-RPFA 861 (958)
Q Consensus 783 ~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-~~~~ 861 (958)
.++++|+||||+|.... ...+|...+++|+.|+.++++++.. .+.++||++||+++. .+.+
T Consensus 156 -------aLggiDiVVn~AG~~~~------~v~d~~~~~~VN~~Gt~nLl~Aa~~-----agVgRIV~VSSiga~~~g~p 217 (576)
T PLN03209 156 -------ALGNASVVICCIGASEK------EVFDVTGPYRIDYLATKNLVDAATV-----AKVNHFILVTSLGTNKVGFP 217 (576)
T ss_pred -------HhcCCCEEEEccccccc------cccchhhHHHHHHHHHHHHHHHHHH-----hCCCEEEEEccchhcccCcc
Confidence 45789999999997532 1224788899999999998888753 234799999999874 3333
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
.. .|. +|+++..+.+.+..++...||++++|+||++.|++...................+.+.++|+|+.++|++.++
T Consensus 218 ~~-~~~-sk~~~~~~KraaE~~L~~sGIrvTIVRPG~L~tp~d~~~~t~~v~~~~~d~~~gr~isreDVA~vVvfLasd~ 295 (576)
T PLN03209 218 AA-ILN-LFWGVLCWKRKAEEALIASGLPYTIVRPGGMERPTDAYKETHNLTLSEEDTLFGGQVSNLQVAELMACMAKNR 295 (576)
T ss_pred cc-chh-hHHHHHHHHHHHHHHHHHcCCCEEEEECCeecCCccccccccceeeccccccCCCccCHHHHHHHHHHHHcCc
Confidence 32 244 8999999999999999999999999999999988643211100000011111234678999999999988877
Q ss_pred CCcccc
Q psy4557 942 SHSAVN 947 (958)
Q Consensus 942 ~~~~i~ 947 (958)
...+++
T Consensus 296 ~as~~k 301 (576)
T PLN03209 296 RLSYCK 301 (576)
T ss_pred hhccce
Confidence 544443
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-20 Score=195.23 Aligned_cols=216 Identities=19% Similarity=0.242 Sum_probs=162.4
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||++|.||+.|.+.|- +...|+++.|.. .|+ .+.
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------------------------~Di-------td~ 39 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAE---------------------------------LDI-------TDP 39 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------------------------ccc-------cCh
Confidence 48999999999999998765 556788776532 233 333
Q ss_pred HHHHHHhc--ccCEEEEcccccCcccC---hHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCcccccc
Q psy4557 401 DEYVSLSY--EIDMIIHAAAFVNLILP---YNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQEDYTV 474 (958)
Q Consensus 401 ~~~~~l~~--~vd~IiH~AA~v~~~~~---~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~~~~ 474 (958)
+...++.+ ++|+|||+||.++.... .+.-+.+|..|+.||.++|.+.+ .+++|+||..||.... .++.|++
T Consensus 40 ~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g-a~lVhiSTDyVFDG~~~~~Y~E~D-- 116 (281)
T COG1091 40 DAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVG-ARLVHISTDYVFDGEKGGPYKETD-- 116 (281)
T ss_pred HHHHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhC-CeEEEeecceEecCCCCCCCCCCC--
Confidence 44455543 57999999999877543 34457899999999999999888 6899999999996543 4455543
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCC-CCcCCc
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI-DWYLEF 553 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~-~~~~~~ 553 (958)
...|.|.||+||+++|+.+..+. -...|+|.+.+||... .+|...|++...+-..+.-. ++...-
T Consensus 117 -----~~~P~nvYG~sKl~GE~~v~~~~---~~~~I~Rtswv~g~~g------~nFv~tml~la~~~~~l~vv~Dq~gsP 182 (281)
T COG1091 117 -----TPNPLNVYGRSKLAGEEAVRAAG---PRHLILRTSWVYGEYG------NNFVKTMLRLAKEGKELKVVDDQYGSP 182 (281)
T ss_pred -----CCCChhhhhHHHHHHHHHHHHhC---CCEEEEEeeeeecCCC------CCHHHHHHHHhhcCCceEEECCeeeCC
Confidence 23577899999999999998764 4578999999999763 34555666655543322222 466778
Q ss_pred ccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 554 TPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 554 ~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
+++.++|++|.++...... +.+||+.|....||-|+...+-+
T Consensus 183 t~~~dlA~~i~~ll~~~~~-~~~yH~~~~g~~Swydfa~~I~~ 224 (281)
T COG1091 183 TYTEDLADAILELLEKEKE-GGVYHLVNSGECSWYEFAKAIFE 224 (281)
T ss_pred ccHHHHHHHHHHHHhcccc-CcEEEEeCCCcccHHHHHHHHHH
Confidence 9999999999998876543 34999999999999999886643
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=202.91 Aligned_cols=253 Identities=21% Similarity=0.300 Sum_probs=174.3
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||+|++|++.|++++ .+|+++.|..... ..++... .. ..+++.+.+|++. .
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~~~~~~~--~~~~~~~----------~~-~~~~~~~~~D~~~-------~ 59 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLDNLSNGS--PEALKRG----------ER-ITRVTFVEGDLRD-------R 59 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEeCCCccc--hhhhhhh----------cc-ccceEEEECCCCC-------H
Confidence 58999999999999999998764 5677665432211 1111100 00 1257778889874 3
Q ss_pred HHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcccccc
Q psy4557 401 DEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYTV 474 (958)
Q Consensus 401 ~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~~ 474 (958)
+.+..+.. .+|+|||+|+..... ..+...+..|+.|+.++++.|.+.+.++|+|+||.++|+.... .+.|+
T Consensus 60 ~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~--- 136 (328)
T TIGR01179 60 ELLDRLFEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISED--- 136 (328)
T ss_pred HHHHHHHHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCcccc---
Confidence 45555543 699999999976432 2334556789999999999998888889999999999975422 22332
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHh-h-CCCCEEEEecCceeccCCCCCc-----ChhHHHHHHHHHHHHh-C----
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAG-Q-MGLPVSIVRCGNIGGSLEFKNW-----NLVDLNLYILKAITRL-G---- 542 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~-~glp~~I~R~g~i~G~~~~g~~-----n~~d~~~~l~~~~~~~-g---- 542 (958)
.+..+.+.|+.||+.+|+++.... + .|++++|+||+++||+...+.. +...++..+.+..... +
T Consensus 137 ----~~~~~~~~y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (328)
T TIGR01179 137 ----SPLGPINPYGRSKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTI 212 (328)
T ss_pred ----CCCCCCCchHHHHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEE
Confidence 122356789999999999998754 4 6999999999999998654421 1223344444333211 1
Q ss_pred ---CcC--CCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCCCHHHHHHHHHHc-CCCc
Q psy4557 543 ---YAP--DIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPIHIKTLVSVLNTY-GYNI 601 (958)
Q Consensus 543 ---~~P--~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~ 601 (958)
.+| +.....+|+++|+++++++.+.... ...+++||+.++.++++.|+++.+.+. |.+.
T Consensus 213 ~~~~~~~~~g~~~~~~v~~~D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~ 279 (328)
T TIGR01179 213 FGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDF 279 (328)
T ss_pred eCCcccCCCCceEEeeeeHHHHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCc
Confidence 112 2234578999999999999887542 234689999999999999999999764 5543
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=187.11 Aligned_cols=175 Identities=22% Similarity=0.281 Sum_probs=149.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHH---HHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENL---KTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~---~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
|+++||||++|||++++++|+++|+ .|++++|+.+..+.. .+++...+.++..+.+|++++++++++++++...++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999997 688888876544332 234444556788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|++|||||......+.+.+.++|++++++|+.|++.+++.+. ..+.++||++||..+..+.++...|+++|++
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~ii~~ss~~~~~~~~~~~~y~~sk~~ 155 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTR-----DLPLDFFVLFSSVAGVLGNPGQANYAAANAF 155 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhc-----cCCcceEEEEccHHHhcCCCCchhhHHHHHH
Confidence 99999999998766677788999999999999999999998773 2345899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCccc
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVK 900 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~ 900 (958)
+..+++.++ ..|+++.++.||+++
T Consensus 156 ~~~~~~~~~----~~~~~~~~~~~g~~~ 179 (180)
T smart00822 156 LDALAAHRR----ARGLPATSINWGAWA 179 (180)
T ss_pred HHHHHHHHH----hcCCceEEEeecccc
Confidence 999987764 468889999999875
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=199.30 Aligned_cols=215 Identities=19% Similarity=0.181 Sum_probs=142.0
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|||||||||||+||++.|++++ .+|+...+.-.+. . .+.+|+.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~~~~~~~~~---~-----------------------~v~~~l~------- 54 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG-IDFHYGSGRLENR---A-----------------------SLEADID------- 54 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC-CEEEEecCccCCH---H-----------------------HHHHHHH-------
Confidence 4689999999999999999998764 4554321110000 0 0111111
Q ss_pred cHHHHHHHhcccCEEEEcccccCcc------cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC------
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLI------LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE------ 466 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~------~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~------ 466 (958)
..++|+|||+||.++.. ........+|+.||.+|+++|++.+++ ++++||.+||+....
T Consensus 55 --------~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~ 125 (298)
T PLN02778 55 --------AVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSG 125 (298)
T ss_pred --------hcCCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccC
Confidence 12689999999987431 233467789999999999999988875 566788888864321
Q ss_pred -CCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC
Q psy4557 467 -NFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP 545 (958)
Q Consensus 467 -~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P 545 (958)
++.|+. .+..+.+.|+.||+++|+++..+. +..++|++..+|+... ....+ ++.+.... +
T Consensus 126 ~~~~Ee~------~p~~~~s~Yg~sK~~~E~~~~~y~----~~~~lr~~~~~~~~~~---~~~~f----i~~~~~~~--~ 186 (298)
T PLN02778 126 IGFKEED------TPNFTGSFYSKTKAMVEELLKNYE----NVCTLRVRMPISSDLS---NPRNF----ITKITRYE--K 186 (298)
T ss_pred CCCCcCC------CCCCCCCchHHHHHHHHHHHHHhh----ccEEeeecccCCcccc---cHHHH----HHHHHcCC--C
Confidence 122221 112245789999999999997654 3567888777775321 11122 33222221 1
Q ss_pred CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 546 DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 546 ~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
-.....++++||+++++++.+..... +.+||++++.++++.|+++.+.+.
T Consensus 187 ~~~~~~s~~yv~D~v~al~~~l~~~~--~g~yNigs~~~iS~~el~~~i~~~ 236 (298)
T PLN02778 187 VVNIPNSMTILDELLPISIEMAKRNL--TGIYNFTNPGVVSHNEILEMYRDY 236 (298)
T ss_pred eeEcCCCCEEHHHHHHHHHHHHhCCC--CCeEEeCCCCcccHHHHHHHHHHH
Confidence 11123479999999999999875432 359999999999999999988764
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=204.18 Aligned_cols=298 Identities=12% Similarity=0.135 Sum_probs=189.6
Q ss_pred ccCceEEe----ccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHH-HHHHhccccccccc-cCceEEecccCC
Q psy4557 318 KYGNVLLT----GVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLED-IMLKYHMSLDLNNY-TDRLILVKSDLS 391 (958)
Q Consensus 318 ~~~~VllT----GaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~-~~~~~~~~~~~~~~-~~ri~~v~gDl~ 391 (958)
..++|||| |||||+|+||+++|+++ +.+|++++|...... .+.. ....+ ... ...++++.||+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~-G~~V~~l~R~~~~~~---~~~~~~~~~~------~~l~~~~v~~v~~D~~ 120 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKA-GHEVTLFTRGKEPSQ---KMKKEPFSRF------SELSSAGVKTVWGDPA 120 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHC-CCEEEEEecCCcchh---hhccCchhhh------hHhhhcCceEEEecHH
Confidence 34689999 99999999999999976 478999999754311 1100 00000 001 124788999976
Q ss_pred CCCCCCCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcc
Q psy4557 392 LEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQE 470 (958)
Q Consensus 392 ~~~lGL~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e 470 (958)
. + +... -...+|+|||+++. ++.++++|+++|.+.++++|+|+||.+||+.... +..|
T Consensus 121 d----~---~~~~-~~~~~d~Vi~~~~~-------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E 179 (378)
T PLN00016 121 D----V---KSKV-AGAGFDVVYDNNGK-------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVE 179 (378)
T ss_pred H----H---Hhhh-ccCCccEEEeCCCC-------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCC
Confidence 3 1 1111 12479999999753 3568999999999889999999999999985422 2222
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc--CC-C
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA--PD-I 547 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~--P~-~ 547 (958)
+ + +...+. +|+.+|.+++. .|++++|+||+++||+...+ ++...++..+..-+.+ |. .
T Consensus 180 ~-------~---~~~p~~-sK~~~E~~l~~---~~l~~~ilRp~~vyG~~~~~-----~~~~~~~~~~~~~~~i~~~g~g 240 (378)
T PLN00016 180 G-------D---AVKPKA-GHLEVEAYLQK---LGVNWTSFRPQYIYGPGNNK-----DCEEWFFDRLVRGRPVPIPGSG 240 (378)
T ss_pred C-------C---cCCCcc-hHHHHHHHHHH---cCCCeEEEeceeEECCCCCC-----chHHHHHHHHHcCCceeecCCC
Confidence 1 1 111222 89999998753 58999999999999986432 1222233322222222 22 2
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH-cCCCccccChHHHHHHHhccCCCchhHHHH
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT-YGYNIKTVPYEKWFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~ 626 (958)
....+|++|+++|++++.+..++...+++||+.++..+++.|+++.+.+ .|.+.+.+.+..+.-.....
T Consensus 241 ~~~~~~i~v~Dva~ai~~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~---------- 310 (378)
T PLN00016 241 IQLTQLGHVKDLASMFALVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAK---------- 310 (378)
T ss_pred CeeeceecHHHHHHHHHHHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCcccc----------
Confidence 3457899999999999999877655678999999999999999999976 47665433322110000000
Q ss_pred hhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q psy4557 627 RNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNV 680 (958)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~~~ 680 (958)
...+ +.......|.++.++. +|.+...--.+-|+..++++.+.|++...
T Consensus 311 -~~~p-~~~~~~~~d~~ka~~~---LGw~p~~~l~egl~~~~~~~~~~~~~~~~ 359 (378)
T PLN00016 311 -KAFP-FRDQHFFASPRKAKEE---LGWTPKFDLVEDLKDRYELYFGRGRDRKE 359 (378)
T ss_pred -cccc-ccccccccCHHHHHHh---cCCCCCCCHHHHHHHHHHHHHhcCCCccc
Confidence 0000 0001112355555544 46544323345788999999999988544
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=199.18 Aligned_cols=242 Identities=17% Similarity=0.131 Sum_probs=159.6
Q ss_pred eEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcHH
Q psy4557 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQD 401 (958)
Q Consensus 322 VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~~ 401 (958)
|||||||||||+++++.|+++ +.+|++++|......... ...+. |+. +.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~------------------~~~~~----~~~----~~---- 49 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD-GHEVTILTRSPPAGANTK------------------WEGYK----PWA----PL---- 49 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc-CCEEEEEeCCCCCCCccc------------------ceeee----ccc----cc----
Confidence 699999999999999999976 479999999754321000 00011 111 11
Q ss_pred HHHHHhcccCEEEEcccccCcccC-----hHHHHhhhHHHHHHHHHhhccCCCc--cEEEEecccccCCCC-CCCccccc
Q psy4557 402 EYVSLSYEIDMIIHAAAFVNLILP-----YNALYKSNVLATKNLIEFSFLNKIK--SFHYVSTDSIYPSTS-ENFQEDYT 473 (958)
Q Consensus 402 ~~~~l~~~vd~IiH~AA~v~~~~~-----~~~~~~~NV~gt~~ll~~a~~~~~k--~~~~vST~~v~~~~~-~~~~e~~~ 473 (958)
.......++|+|||+||......+ ...++++|+.||++|+++|...+++ .|++.||.++||... ..+.|+.+
T Consensus 50 ~~~~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~ 129 (292)
T TIGR01777 50 AESEALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDS 129 (292)
T ss_pred chhhhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccC
Confidence 112234579999999997654222 2357789999999999999888764 455566667888542 22333221
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHH--HhCCcCCCCCcC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAIT--RLGYAPDIDWYL 551 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~--~~g~~P~~~~~~ 551 (958)
..+.+.|+..|...|+.+..+.+.|++++|+||+.+||+.. +. ...+..... ..+.+++.+..+
T Consensus 130 -------~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ilR~~~v~G~~~-~~------~~~~~~~~~~~~~~~~g~~~~~~ 195 (292)
T TIGR01777 130 -------PAGDDFLAELCRDWEEAAQAAEDLGTRVVLLRTGIVLGPKG-GA------LAKMLPPFRLGLGGPLGSGRQWF 195 (292)
T ss_pred -------CCCCChHHHHHHHHHHHhhhchhcCCceEEEeeeeEECCCc-ch------hHHHHHHHhcCcccccCCCCccc
Confidence 12233466677777877776666699999999999999853 11 122221111 112223445668
Q ss_pred CcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHH
Q psy4557 552 EFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWF 610 (958)
Q Consensus 552 ~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~ 610 (958)
++++||++|++++.+...+. ...+||+.+++++++.|+++.+.+. |.+. .++...|.
T Consensus 196 ~~i~v~Dva~~i~~~l~~~~-~~g~~~~~~~~~~s~~di~~~i~~~~g~~~-~~~~p~~~ 253 (292)
T TIGR01777 196 SWIHIEDLVQLILFALENAS-ISGPVNATAPEPVRNKEFAKALARALHRPA-FFPVPAFV 253 (292)
T ss_pred ccEeHHHHHHHHHHHhcCcc-cCCceEecCCCccCHHHHHHHHHHHhCCCC-cCcCCHHH
Confidence 99999999999999886643 3468999999999999999999754 6543 23444554
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >KOG1371|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-20 Score=192.10 Aligned_cols=255 Identities=20% Similarity=0.293 Sum_probs=174.9
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEe-ccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCP-VRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~cl-vR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++||||||+||+|+|-+-+|++++. .|.|+ .-.........|+++.... .++|.++.+||.
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy-~v~~vDNl~n~~~~sl~r~~~l~~~----------~~~v~f~~~Dl~------ 64 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGY-GVVIVDNLNNSYLESLKRVRQLLGE----------GKSVFFVEGDLN------ 64 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCC-cEEEEecccccchhHHHHHHHhcCC----------CCceEEEEeccC------
Confidence 35899999999999999999998754 44443 3333334556666554311 468999999987
Q ss_pred CcHHHHHHHh--cccCEEEEcccccCcccC---hHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccc
Q psy4557 398 KNQDEYVSLS--YEIDMIIHAAAFVNLILP---YNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQED 471 (958)
Q Consensus 398 ~~~~~~~~l~--~~vd~IiH~AA~v~~~~~---~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~ 471 (958)
+.+..+.+. ..+|.|+|.||.-..-.+ ...+...|+.||.+||+.+.+.+++.++|.||.+|||.... +++|+
T Consensus 65 -D~~~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~ 143 (343)
T KOG1371|consen 65 -DAEALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEE 143 (343)
T ss_pred -CHHHHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCc
Confidence 345555554 358999999997543222 23467789999999999999988999999999999997543 34443
Q ss_pred ccccCcCCCCCCCCChhHHHHHHHHHHHHHhh-CCCCEEEEecCceeccCCCCCc--C----hhHHHHHHHHHHHHhCCc
Q psy4557 472 YTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ-MGLPVSIVRCGNIGGSLEFKNW--N----LVDLNLYILKAITRLGYA 544 (958)
Q Consensus 472 ~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~-~glp~~I~R~g~i~G~~~~g~~--n----~~d~~~~l~~~~~~~g~~ 544 (958)
.+. + .+.+.|+.||...|.++..... .++.++++|.++++|.--.|.- . ..+..+... -..+|..
T Consensus 144 ~~t----~--~p~~pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~--~vaigr~ 215 (343)
T KOG1371|consen 144 DPT----D--QPTNPYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVF--QVAIGRR 215 (343)
T ss_pred CCC----C--CCCCcchhhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCccccccccc--chhhccc
Confidence 221 1 3678999999999999987654 4799999999999993332321 1 112222111 1234444
Q ss_pred CCCC------------CcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCCCHHHHHHHHHHc-CC
Q psy4557 545 PDID------------WYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPIHIKTLVSVLNTY-GY 599 (958)
Q Consensus 545 P~~~------------~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~~~~~l~~~l~~~-g~ 599 (958)
|.+. ...+.+.|=+.|+..+.+..... ....+||+++..+.++.+++..++.. |.
T Consensus 216 ~~l~v~g~d~~t~dgt~vrdyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~ 285 (343)
T KOG1371|consen 216 PNLQVVGRDYTTIDGTIVRDYIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGV 285 (343)
T ss_pred ccceeecCcccccCCCeeecceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcC
Confidence 5432 12344555567777776654432 23459999999999999999998754 44
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=206.14 Aligned_cols=243 Identities=17% Similarity=0.101 Sum_probs=171.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.+.+|||||||||||++++++|+++ +.+|++++|..+.........+.. ....+++++.+|++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~-G~~V~~l~R~~~~~~~~~~~~~~~----------~~~~~v~~v~~Dl~d----- 122 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRR-GYNVVAVAREKSGIRGKNGKEDTK----------KELPGAEVVFGDVTD----- 122 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEEechhhccccchhhHHh----------hhcCCceEEEeeCCC-----
Confidence 4678999999999999999999976 478999999653221100000000 012467889999874
Q ss_pred CcHHHHHHHhc----ccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCccccc
Q psy4557 398 KNQDEYVSLSY----EIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~----~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~ 473 (958)
.+....+.+ .+|+||||++.... ...+.+.+|+.++.++++.|++.++++|+|+||..++++
T Consensus 123 --~~~l~~~~~~~~~~~D~Vi~~aa~~~~--~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~p---------- 188 (390)
T PLN02657 123 --ADSLRKVLFSEGDPVDVVVSCLASRTG--GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQKP---------- 188 (390)
T ss_pred --HHHHHHHHHHhCCCCcEEEECCccCCC--CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccCc----------
Confidence 355555554 69999999885321 122346789999999999999888899999999876531
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC---cCCCCC-
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY---APDIDW- 549 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~---~P~~~~- 549 (958)
...|..+|...|+.+.. ...|++++|+||+.+||+. ..+ +.....-+. +.+...
T Consensus 189 ----------~~~~~~sK~~~E~~l~~-~~~gl~~tIlRp~~~~~~~-------~~~----~~~~~~g~~~~~~GdG~~~ 246 (390)
T PLN02657 189 ----------LLEFQRAKLKFEAELQA-LDSDFTYSIVRPTAFFKSL-------GGQ----VEIVKDGGPYVMFGDGKLC 246 (390)
T ss_pred ----------chHHHHHHHHHHHHHHh-ccCCCCEEEEccHHHhccc-------HHH----HHhhccCCceEEecCCccc
Confidence 23588999999998865 3469999999999999742 111 111111111 112222
Q ss_pred cCCcccHHHHHHHHHHHhcCcCCCCceEEecCC-CCCCHHHHHHHHHH-cCCCccccChHHHHHH
Q psy4557 550 YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINT-NPIHIKTLVSVLNT-YGYNIKTVPYEKWFHK 612 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~-~~~~~~~l~~~l~~-~g~~~~~v~~~eW~~~ 612 (958)
...++.|+++|++++.+...+...+++||+.+| ..+++.|+.+.+.+ .|.+.+.+....|...
T Consensus 247 ~~~~I~v~DlA~~i~~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~~~~~ 311 (390)
T PLN02657 247 ACKPISEADLASFIADCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPIQIMD 311 (390)
T ss_pred ccCceeHHHHHHHHHHHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCHHHHH
Confidence 245799999999999988766556799999987 58999999999975 4776666655566554
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.3e-20 Score=194.58 Aligned_cols=237 Identities=24% Similarity=0.267 Sum_probs=150.1
Q ss_pred eEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcHH
Q psy4557 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQD 401 (958)
Q Consensus 322 VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~~ 401 (958)
||||||+|+||+.|+++|++....+++++.|... .+-.++..+...... ......+.++.||+. +.+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~---~l~~l~~~l~~~~~~---~~v~~~~~~vigDvr-------d~~ 67 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDEN---KLYELERELRSRFPD---PKVRFEIVPVIGDVR-------DKE 67 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HH---HHHHHHHHCHHHC-----TTCEEEEE--CTSCC-------HHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChh---HHHHHHHHHhhcccc---cCcccccCceeeccc-------CHH
Confidence 7999999999999999999887778999988533 233333222111000 011123456789986 446
Q ss_pred HHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccC
Q psy4557 402 EYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVAD 476 (958)
Q Consensus 402 ~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~ 476 (958)
....+.+ ++|+|||.||.-|.. ....+..++||.||+|++++|...++++|+++||....
T Consensus 68 ~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv--------------- 132 (293)
T PF02719_consen 68 RLNRIFEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAV--------------- 132 (293)
T ss_dssp HHHHHTT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCS---------------
T ss_pred HHHHHHhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccC---------------
Confidence 6667766 899999999975431 22334568999999999999999999999999996431
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHhhC----CCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC--CCCCc
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAGQM----GLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP--DIDWY 550 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~~~----glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P--~~~~~ 550 (958)
.|.|-||.||.+||+++..+... +..++++|.|||.|++.+ . ++.+.+...+-|-+. +-+.+
T Consensus 133 -----~PtnvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GS----V---ip~F~~Qi~~g~PlTvT~p~mt 200 (293)
T PF02719_consen 133 -----NPTNVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGS----V---IPLFKKQIKNGGPLTVTDPDMT 200 (293)
T ss_dssp -----S--SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTS----C---HHHHHHHHHTTSSEEECETT-E
T ss_pred -----CCCcHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCc----H---HHHHHHHHHcCCcceeCCCCcE
Confidence 35688999999999999887643 478999999999998632 1 233333333333221 23455
Q ss_pred CCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH-cCC
Q psy4557 551 LEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT-YGY 599 (958)
Q Consensus 551 ~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~ 599 (958)
.-|.-++.+++-++..+.... .+++|-+--..++.+.|+.+.+.+ .|+
T Consensus 201 Rffmti~EAv~Lvl~a~~~~~-~geifvl~mg~~v~I~dlA~~~i~~~g~ 249 (293)
T PF02719_consen 201 RFFMTIEEAVQLVLQAAALAK-GGEIFVLDMGEPVKILDLAEAMIELSGL 249 (293)
T ss_dssp EEEE-HHHHHHHHHHHHHH---TTEEEEE---TCEECCCHHHHHHHHTT-
T ss_pred EEEecHHHHHHHHHHHHhhCC-CCcEEEecCCCCcCHHHHHHHHHhhccc
Confidence 678899999998887765432 478888877778888898886653 454
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >KOG1478|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.4e-20 Score=183.45 Aligned_cols=191 Identities=20% Similarity=0.279 Sum_probs=163.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcC-----CeEEEEecChhhHHHHHHHhhcCC----CcEEEEEecCCCHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLG-----AKVVAVARRIDRLENLKTSLQNAP----GSIIVKKLDVTIENDVKKVVR 785 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~G-----a~Vi~~~r~~~~l~~~~~~l~~~~----~~~~~~~~Dvs~~~~v~~~~~ 785 (958)
..|+++|||++||||+++|++|.+.. .++++++|+.++++++.+.+.+.. .++.++.+|+++..+|.++.+
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~ 81 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK 81 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence 46899999999999999999999864 358889999999999888776543 356788999999999999999
Q ss_pred HHHHHcCCccEEEEccccCCCcc--------------c-------------cCCCHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4557 786 EVLAELGHIDILVNNAGVMYFTL--------------M-------------EKYKLEEWNAMINVNIKGVLHCIGNILPS 838 (958)
Q Consensus 786 ~~~~~~g~iDilInnAG~~~~~~--------------~-------------~~~~~~~~~~~~~vN~~g~~~~~~~~l~~ 838 (958)
++.++|.++|.+..|||++.... + ...+.|+...+|++|++|+|++++.+.|.
T Consensus 82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl 161 (341)
T KOG1478|consen 82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL 161 (341)
T ss_pred HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence 99999999999999999863211 0 12456788999999999999999999999
Q ss_pred HHhCCCCcEEEEecCccCcCC---------CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCC
Q psy4557 839 MLHSRRPGHILNISSNAGVRP---------FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSH 906 (958)
Q Consensus 839 m~~~~~~g~IV~isS~~g~~~---------~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~ 906 (958)
+.++. ...+|.+||..+... +-+...|++||.++.-+.-++-+.+.+.|+.-++++||..-|.+...
T Consensus 162 l~~~~-~~~lvwtSS~~a~kk~lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt~~~~~ 237 (341)
T KOG1478|consen 162 LCHSD-NPQLVWTSSRMARKKNLSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTTNSFSE 237 (341)
T ss_pred hhcCC-CCeEEEEeecccccccCCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeecchhhh
Confidence 97544 349999999988643 34677899999999999999999999999999999999999988654
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-18 Score=190.72 Aligned_cols=235 Identities=23% Similarity=0.256 Sum_probs=175.5
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||||.+|+-|++++++....+++.+.|.... +..+...+.... + ..++.++-||+.
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~---~~~i~~el~~~~-----~--~~~~~~~igdVr------ 312 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYK---LYLIDMELREKF-----P--ELKLRFYIGDVR------ 312 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHH---HHHHHHHHHhhC-----C--CcceEEEecccc------
Confidence 678999999999999999999998877788888775433 333333332211 1 368899999986
Q ss_pred CcHHHHHHHhcc--cCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccc
Q psy4557 398 KNQDEYVSLSYE--IDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDY 472 (958)
Q Consensus 398 ~~~~~~~~l~~~--vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~ 472 (958)
|.+......++ +|+|||+||.-|.. ....+-.++||.||.|+++.|...++++|+++||...
T Consensus 313 -D~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKA------------ 379 (588)
T COG1086 313 -DRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA------------ 379 (588)
T ss_pred -cHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcc------------
Confidence 34666666666 99999999986542 2234556799999999999999999999999999543
Q ss_pred cccCcCCCCCCCCChhHHHHHHHHHHHHHhhC----CCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC--C
Q psy4557 473 TVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM----GLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP--D 546 (958)
Q Consensus 473 ~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~----glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P--~ 546 (958)
..|.|.||.||.+||+++..+..+ +-..+++|.|||.|++.+ .++.+.+...+-|-++ +
T Consensus 380 --------V~PtNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrGS-------ViPlFk~QI~~GgplTvTd 444 (588)
T COG1086 380 --------VNPTNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRGS-------VIPLFKKQIAEGGPLTVTD 444 (588)
T ss_pred --------cCCchHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCCC-------CHHHHHHHHHcCCCccccC
Confidence 145789999999999999887542 478999999999998732 1233334333434333 2
Q ss_pred CCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 547 IDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 547 ~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
.+.+.-|.-++.+++-+++..... ..|.+|-+--..|+.+.|+.+.+-+.
T Consensus 445 p~mtRyfMTI~EAv~LVlqA~a~~-~gGeifvldMGepvkI~dLAk~mi~l 494 (588)
T COG1086 445 PDMTRFFMTIPEAVQLVLQAGAIA-KGGEIFVLDMGEPVKIIDLAKAMIEL 494 (588)
T ss_pred CCceeEEEEHHHHHHHHHHHHhhc-CCCcEEEEcCCCCeEHHHHHHHHHHH
Confidence 335667889999999888876543 35789988888899999999877543
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=187.55 Aligned_cols=186 Identities=17% Similarity=0.071 Sum_probs=145.3
Q ss_pred CCCEEEEEcCCchHHHH--HHHHHHHcCCeEEEEecChhhH------------HHHHHHhhcCCCcEEEEEecCCCHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQ--LVKDLVTLGAKVVAVARRIDRL------------ENLKTSLQNAPGSIIVKKLDVTIENDV 780 (958)
Q Consensus 715 ~~k~~lITGas~GIG~a--ia~~la~~Ga~Vi~~~r~~~~l------------~~~~~~l~~~~~~~~~~~~Dvs~~~~v 780 (958)
.||++||||||+|||++ +|+.| ++|++|+++++..+.. +.+.+.+.+.+..+..+.||+++++++
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v 118 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIK 118 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 47999999999999999 89999 9999999888543221 234444444455677889999999999
Q ss_pred HHHHHHHHHHcCCccEEEEccccCCCcc-----------------c-----------------cCCCHHHHHHHHHHHhH
Q psy4557 781 KKVVREVLAELGHIDILVNNAGVMYFTL-----------------M-----------------EKYKLEEWNAMINVNIK 826 (958)
Q Consensus 781 ~~~~~~~~~~~g~iDilInnAG~~~~~~-----------------~-----------------~~~~~~~~~~~~~vN~~ 826 (958)
+++++++.+.+|+||+||||+|...... + ...+.++++.++++ .
T Consensus 119 ~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~v--M 196 (398)
T PRK13656 119 QKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKV--M 196 (398)
T ss_pred HHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHh--h
Confidence 9999999999999999999999873211 1 12445566655543 3
Q ss_pred HH---HHH--HHHHHHHHHhCCCCcEEEEecCccCcCCCCCC--hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcc
Q psy4557 827 GV---LHC--IGNILPSMLHSRRPGHILNISSNAGVRPFAGL--AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDV 899 (958)
Q Consensus 827 g~---~~~--~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~--~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v 899 (958)
|. ... .+...+.|. .++++|..|+.......|.+ ..-+.+|++++.-+|.|+.+|++.|||||++.+|.+
T Consensus 197 ggedw~~Wi~al~~a~lla---~g~~~va~TY~G~~~t~p~Y~~g~mG~AKa~LE~~~r~La~~L~~~giran~i~~g~~ 273 (398)
T PRK13656 197 GGEDWELWIDALDEAGVLA---EGAKTVAYSYIGPELTHPIYWDGTIGKAKKDLDRTALALNEKLAAKGGDAYVSVLKAV 273 (398)
T ss_pred ccchHHHHHHHHHhccccc---CCcEEEEEecCCcceeecccCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcc
Confidence 33 112 233444442 45899999999999998888 589999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy4557 900 KTELLSH 906 (958)
Q Consensus 900 ~T~~~~~ 906 (958)
.|.-...
T Consensus 274 ~T~Ass~ 280 (398)
T PRK13656 274 VTQASSA 280 (398)
T ss_pred cchhhhc
Confidence 9985443
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=206.98 Aligned_cols=255 Identities=15% Similarity=0.117 Sum_probs=174.0
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||+|++|+++|+.+ +.+|+++.|.... . ...++.++.+|+.. .
T Consensus 2 kILVTGATGfIGs~La~~Ll~~-G~~Vv~l~R~~~~-----~----------------~~~~v~~v~gDL~D-------~ 52 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQ-GHEVVGIARHRPD-----S----------------WPSSADFIAADIRD-------A 52 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCchh-----h----------------cccCceEEEeeCCC-------H
Confidence 6999999999999999999876 4688888875321 0 01256788899863 3
Q ss_pred HHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCCC
Q psy4557 401 DEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDF 480 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~ 480 (958)
+.+..+.+++|+|||+||..+. ...+|+.||.++++.|...++++|+|+||.+
T Consensus 53 ~~l~~al~~vD~VVHlAa~~~~------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~--------------------- 105 (854)
T PRK05865 53 TAVESAMTGADVVAHCAWVRGR------NDHINIDGTANVLKAMAETGTGRIVFTSSGH--------------------- 105 (854)
T ss_pred HHHHHHHhCCCEEEECCCcccc------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH---------------------
Confidence 5666677789999999986432 3578999999999999988889999999842
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCC--CCcCCcccHHH
Q psy4557 481 MTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI--DWYLEFTPVDF 558 (958)
Q Consensus 481 ~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~--~~~~~~~pVD~ 558 (958)
|..+|+++. +.|++++|+||+++||+.. ..++..++ ....++.. ...++|++||+
T Consensus 106 ----------K~aaE~ll~---~~gl~~vILRp~~VYGP~~------~~~i~~ll----~~~v~~~G~~~~~~dfIhVdD 162 (854)
T PRK05865 106 ----------QPRVEQMLA---DCGLEWVAVRCALIFGRNV------DNWVQRLF----ALPVLPAGYADRVVQVVHSDD 162 (854)
T ss_pred ----------HHHHHHHHH---HcCCCEEEEEeceEeCCCh------HHHHHHHh----cCceeccCCCCceEeeeeHHH
Confidence 889999884 3599999999999999851 12222222 12223332 23569999999
Q ss_pred HHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccCCCchhHHHHhhccccccccCc
Q psy4557 559 LTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQILRNKGKEYLTVNN 638 (958)
Q Consensus 559 va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (958)
++++++.+.......+.+||++++..+++.++.+.+... ...++ .+..... .+.... .......
T Consensus 163 VA~Ai~~aL~~~~~~ggvyNIgsg~~~Si~EIae~l~~~---~~~v~--~~~~~~~---~~~~~~--------~~~~~~~ 226 (854)
T PRK05865 163 AQRLLVRALLDTVIDSGPVNLAAPGELTFRRIAAALGRP---MVPIG--SPVLRRV---TSFAEL--------ELLHSAP 226 (854)
T ss_pred HHHHHHHHHhCCCcCCCeEEEECCCcccHHHHHHHHhhh---hccCC--chhhhhc---cchhhh--------hcccCCc
Confidence 999999887544334679999999999999999988652 11111 1111100 000000 0111223
Q ss_pred ccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 639 SYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 639 ~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
..|++++++.| |.+...--.+-|+.+++|+..
T Consensus 227 ~~D~sKar~~L---Gw~P~~sLeeGL~dti~~~r~ 258 (854)
T PRK05865 227 LMDVTLLRDRW---GFQPAWNAEECLEDFTLAVRG 258 (854)
T ss_pred cCCHHHHHHHh---CCCCCCCHHHHHHHHHHHHHh
Confidence 46778777665 554332234568888888864
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-17 Score=194.64 Aligned_cols=217 Identities=17% Similarity=0.161 Sum_probs=155.8
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||+||+++|++++ .+|+|+.|.... . ...+++++.+|+..+
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr~~~~------~---------------~~~~ve~v~~Dl~d~------- 52 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG-HTVSGIAQHPHD------A---------------LDPRVDYVCASLRNP------- 52 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCChhh------c---------------ccCCceEEEccCCCH-------
Confidence 69999999999999999998764 689999874221 0 013577889998743
Q ss_pred HHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCCC
Q psy4557 401 DEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDF 480 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~ 480 (958)
.+..+..++|+|||+|+.... ....+|+.||.|++++|++.++ +++|+||. +|..
T Consensus 53 -~l~~al~~~D~VIHLAa~~~~-----~~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~--~G~~---------------- 107 (699)
T PRK12320 53 -VLQELAGEADAVIHLAPVDTS-----APGGVGITGLAHVANAAARAGA-RLLFVSQA--AGRP---------------- 107 (699)
T ss_pred -HHHHHhcCCCEEEEcCccCcc-----chhhHHHHHHHHHHHHHHHcCC-eEEEEECC--CCCC----------------
Confidence 244556789999999986321 1125799999999999988885 79999975 3310
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHH
Q psy4557 481 MTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLT 560 (958)
Q Consensus 481 ~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va 560 (958)
..|. .+|.++.. .++|++|+|++++||+... ++...++..+++.... ...+.+++||+++
T Consensus 108 ----~~~~----~aE~ll~~---~~~p~~ILR~~nVYGp~~~--~~~~r~I~~~l~~~~~-------~~pI~vIyVdDvv 167 (699)
T PRK12320 108 ----ELYR----QAETLVST---GWAPSLVIRIAPPVGRQLD--WMVCRTVATLLRSKVS-------ARPIRVLHLDDLV 167 (699)
T ss_pred ----cccc----HHHHHHHh---cCCCEEEEeCceecCCCCc--ccHhHHHHHHHHHHHc-------CCceEEEEHHHHH
Confidence 0122 47877643 4699999999999998532 3323344444432211 2235569999999
Q ss_pred HHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHH
Q psy4557 561 KSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKL 613 (958)
Q Consensus 561 ~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~ 613 (958)
++++.++.... ..+||+++++.+++.++++.+...+-..+..+..+|.+..
T Consensus 168 ~alv~al~~~~--~GiyNIG~~~~~Si~el~~~i~~~~p~~~~~~~~~~~~~~ 218 (699)
T PRK12320 168 RFLVLALNTDR--NGVVDLATPDTTNVVTAWRLLRSVDPHLRTRRVRSWEQLI 218 (699)
T ss_pred HHHHHHHhCCC--CCEEEEeCCCeeEHHHHHHHHHHhCCCccccccccHHHhC
Confidence 99999876532 3499999999999999999998765555566778887753
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-17 Score=181.27 Aligned_cols=205 Identities=16% Similarity=0.204 Sum_probs=153.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcC--CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++||+++||||+|+||++++++|+++| ++|++++|+..+..++...+. ..++.++.+|++|.+++.++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~--~~~~~~v~~Dl~d~~~l~~~~~------ 73 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP--APCLRFFIGDVRDKERLTRALR------ 73 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHh------
Confidence 578999999999999999999999987 789999998766555544442 2357788999999988877654
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
.+|++|||||.... +..+.++ ..++++|+.|++++++++.+ .+.++||++||.....| ...|++||+
T Consensus 74 -~iD~Vih~Ag~~~~-~~~~~~~---~~~~~~Nv~g~~~ll~aa~~-----~~~~~iV~~SS~~~~~p---~~~Y~~sK~ 140 (324)
T TIGR03589 74 -GVDYVVHAAALKQV-PAAEYNP---FECIRTNINGAQNVIDAAID-----NGVKRVVALSTDKAANP---INLYGATKL 140 (324)
T ss_pred -cCCEEEECcccCCC-chhhcCH---HHHHHHHHHHHHHHHHHHHH-----cCCCEEEEEeCCCCCCC---CCHHHHHHH
Confidence 48999999997532 2223333 46899999999999998864 23469999999765443 467999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-------ccc---cCCCCCCHHHHHHHHHHHhcCC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-------DIS---KAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-------~~~---~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+.+.++++++.+.+..|++++++.||.+..+-.. .-+...... ... ....++.++|++++++.++...
T Consensus 141 ~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~--~i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~a~a~~~al~~~ 218 (324)
T TIGR03589 141 ASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS--VVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLERM 218 (324)
T ss_pred HHHHHHHHHHhhccccCcEEEEEeecceeCCCCC--cHHHHHHHHHhCCCCeeeCCCCceEeeEEHHHHHHHHHHHHhhC
Confidence 9999999999888889999999999999875311 001111000 000 0012578999999999987653
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-17 Score=164.04 Aligned_cols=142 Identities=23% Similarity=0.302 Sum_probs=119.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.++||+++||||++|||+++|+.|+++|++|++++|+.+.+++..+++...+.+..++.+|+++.++++++++++.+.+|
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999998888877777765566677889999999999999999999999
Q ss_pred CccEEEEccccCCCc-cccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC------CCcEEEEecCccCc
Q psy4557 793 HIDILVNNAGVMYFT-LMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR------RPGHILNISSNAGV 857 (958)
Q Consensus 793 ~iDilInnAG~~~~~-~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~------~~g~IV~isS~~g~ 857 (958)
++|++|||||+.... ++.+.+.++|+ .+|+.+++++++.+.+.|.+++ +.|++..|||.+..
T Consensus 93 ~iDilVnnAG~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
T PRK06720 93 RIDMLFQNAGLYKIDSIFSRQQENDSN---VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQS 161 (169)
T ss_pred CCCEEEECCCcCCCCCcccccchhHhh---ceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEecccccc
Confidence 999999999987643 44454555533 7788888999999999987543 25788888887654
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-17 Score=197.70 Aligned_cols=225 Identities=18% Similarity=0.142 Sum_probs=146.7
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
..+|||||||||||+||++.|..++ ..|.. ..+|++
T Consensus 380 ~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~------------------------------------~~~~l~------- 415 (668)
T PLN02260 380 SLKFLIYGRTGWIGGLLGKLCEKQG-IAYEY------------------------------------GKGRLE------- 415 (668)
T ss_pred CceEEEECCCchHHHHHHHHHHhCC-CeEEe------------------------------------eccccc-------
Confidence 4589999999999999999988653 33310 012222
Q ss_pred cHHHHHHHh--cccCEEEEcccccCcc------cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-----
Q psy4557 399 NQDEYVSLS--YEIDMIIHAAAFVNLI------LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS----- 465 (958)
Q Consensus 399 ~~~~~~~l~--~~vd~IiH~AA~v~~~------~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~----- 465 (958)
+.+...... .++|+||||||.++.. .......++|+.||.+|++.|++.+++ ++|+||.+||+...
T Consensus 416 d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~-~v~~Ss~~v~~~~~~~~~~ 494 (668)
T PLN02260 416 DRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLL-MMNFATGCIFEYDAKHPEG 494 (668)
T ss_pred cHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCe-EEEEcccceecCCcccccc
Confidence 112222222 3689999999986421 134566789999999999999988874 67788999986421
Q ss_pred --CCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC
Q psy4557 466 --ENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY 543 (958)
Q Consensus 466 --~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~ 543 (958)
.++.|+. .+..+.+.|+.||+.+|+++..+. ...++|+..+||....+ ..+|+..+++. +.
T Consensus 495 ~~~p~~E~~------~~~~~~~~Yg~sK~~~E~~~~~~~----~~~~~r~~~~~~~~~~~---~~nfv~~~~~~----~~ 557 (668)
T PLN02260 495 SGIGFKEED------KPNFTGSFYSKTKAMVEELLREYD----NVCTLRVRMPISSDLSN---PRNFITKISRY----NK 557 (668)
T ss_pred cCCCCCcCC------CCCCCCChhhHHHHHHHHHHHhhh----hheEEEEEEecccCCCC---ccHHHHHHhcc----ce
Confidence 1223321 111234789999999999997653 45677888888643221 23444444433 21
Q ss_pred cCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH-c--CCCccccChHHH
Q psy4557 544 APDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT-Y--GYNIKTVPYEKW 609 (958)
Q Consensus 544 ~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~-~--g~~~~~v~~~eW 609 (958)
.... ......+|.++.+++.++.. ..+.+||+.|+..++|.|+.+.+.+ . |+.+..++..++
T Consensus 558 ~~~v--p~~~~~~~~~~~~~~~l~~~--~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~ 622 (668)
T PLN02260 558 VVNI--PNSMTVLDELLPISIEMAKR--NLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQ 622 (668)
T ss_pred eecc--CCCceehhhHHHHHHHHHHh--CCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHh
Confidence 1111 23456778888887877753 2357999999999999999998865 4 333455555554
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=161.87 Aligned_cols=173 Identities=20% Similarity=0.317 Sum_probs=136.7
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCC-eEEEEecCh---hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRI---DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~---~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
++|||||.+|||..+|+.|+++|+ +|++++|+. ...++..+++...+.++.+++||++|+++++++++++.+.+++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 689999999999999999999985 899999993 2445666777777889999999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
||.+||+||......+.+.+.++++.++...+.|...+.+.+.+ ..-..+|..||+++..+.++.+.|+++.+.+
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~-----~~l~~~i~~SSis~~~G~~gq~~YaaAN~~l 156 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALEN-----RPLDFFILFSSISSLLGGPGQSAYAAANAFL 156 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTT-----TTTSEEEEEEEHHHHTT-TTBHHHHHHHHHH
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhc-----CCCCeEEEECChhHhccCcchHhHHHHHHHH
Confidence 99999999998888899999999999999999999988776533 3447999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcc
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDV 899 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v 899 (958)
+.|++..+. .|..+.+|+-|..
T Consensus 157 da~a~~~~~----~g~~~~sI~wg~W 178 (181)
T PF08659_consen 157 DALARQRRS----RGLPAVSINWGAW 178 (181)
T ss_dssp HHHHHHHHH----TTSEEEEEEE-EB
T ss_pred HHHHHHHHh----CCCCEEEEEcccc
Confidence 999887654 3677888876643
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=171.19 Aligned_cols=210 Identities=19% Similarity=0.189 Sum_probs=152.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc--CCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN--APGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+||+++||||+|+||++++++|+++|++|+++.|+.+..++....... ...++.++.+|+++.++++++++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~------- 76 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID------- 76 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc-------
Confidence 479999999999999999999999999999999987765544332221 12357788999999998877764
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC-----------
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA----------- 861 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~----------- 861 (958)
++|++|||||.... ..+.+.+...+++|+.|++.+++++.+.+ ..++||++||.++..+..
T Consensus 77 ~~d~vih~A~~~~~----~~~~~~~~~~~~~n~~g~~~ll~a~~~~~----~~~~iv~~SS~~~~~~~~~~~~~~~~~~E 148 (325)
T PLN02989 77 GCETVFHTASPVAI----TVKTDPQVELINPAVNGTINVLRTCTKVS----SVKRVILTSSMAAVLAPETKLGPNDVVDE 148 (325)
T ss_pred CCCEEEEeCCCCCC----CCCCChHHHHHHHHHHHHHHHHHHHHHcC----CceEEEEecchhheecCCccCCCCCccCc
Confidence 48999999996432 23345688999999999999999987643 247999999986543210
Q ss_pred -----------CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhhhhhh-cc-cc----CC
Q psy4557 862 -----------GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDVVDKY-DI-SK----AV 922 (958)
Q Consensus 862 -----------~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~~-~~-~~----~~ 922 (958)
....|+.||.+.+.+.+.++.+. |+.++.+.|+.+..|....... ...+... .. .. ..
T Consensus 149 ~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~~~~~r 225 (325)
T PLN02989 149 TFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDN---EIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHH 225 (325)
T ss_pred CCCCchhHhcccccchHHHHHHHHHHHHHHHHHc---CCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCCCCcCc
Confidence 02469999999999988876653 7999999999998876432110 0111110 00 00 11
Q ss_pred CCCCHHHHHHHHHHHhcCCC
Q psy4557 923 PVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 923 ~~~~p~~ia~~i~~~l~~~~ 942 (958)
.++..+|+|++++.++..+.
T Consensus 226 ~~i~v~Dva~a~~~~l~~~~ 245 (325)
T PLN02989 226 RFVDVRDVALAHVKALETPS 245 (325)
T ss_pred CeeEHHHHHHHHHHHhcCcc
Confidence 34568999999999887654
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=163.72 Aligned_cols=230 Identities=19% Similarity=0.236 Sum_probs=153.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||+|++|+++|+.+ +.+|++++|..+. ....+ .. ..++.++.+|+...
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~-g~~V~~~~R~~~~------~~~~~---------~~-~~~~~~~~~Dl~d~---- 74 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAK-GFAVKAGVRDVDK------AKTSL---------PQ-DPSLQIVRADVTEG---- 74 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhC-CCEEEEEecCHHH------HHHhc---------cc-CCceEEEEeeCCCC----
Confidence 4568999999999999999999976 5789999986432 11110 00 23688899999752
Q ss_pred CcHHHHHHHh-cccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccC
Q psy4557 398 KNQDEYVSLS-YEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVAD 476 (958)
Q Consensus 398 ~~~~~~~~l~-~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~ 476 (958)
...+.... ..+|+|||+++......++. ....|+.|+.++++.+...+.++|+|+||.++|+........ +..
T Consensus 75 --~~~l~~~~~~~~d~vi~~~g~~~~~~~~~-~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~--~~~- 148 (251)
T PLN00141 75 --SDKLVEAIGDDSDAVICATGFRRSFDPFA-PWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILN--PAY- 148 (251)
T ss_pred --HHHHHHHhhcCCCEEEECCCCCcCCCCCC-ceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccC--cch-
Confidence 12333334 58999999988532222222 246799999999999988888999999999998743211100 000
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccH
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPV 556 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pV 556 (958)
........|..+|+.+|++++ +.|++++++|||.++++...+.. . ..|.......+++.
T Consensus 149 --~~~~~~~~~~~~k~~~e~~l~---~~gi~~~iirpg~~~~~~~~~~~--------------~--~~~~~~~~~~~i~~ 207 (251)
T PLN00141 149 --IFLNLFGLTLVAKLQAEKYIR---KSGINYTIVRPGGLTNDPPTGNI--------------V--MEPEDTLYEGSISR 207 (251)
T ss_pred --hHHHHHHHHHHHHHHHHHHHH---hcCCcEEEEECCCccCCCCCceE--------------E--ECCCCccccCcccH
Confidence 000111224567999998775 35899999999999976433210 0 01211112346899
Q ss_pred HHHHHHHHHHhcCcCCCCceEEecC--CC-CCCHHHHHHHHH
Q psy4557 557 DFLTKSLVQLTTNVNNANKIYNFIN--TN-PIHIKTLVSVLN 595 (958)
Q Consensus 557 D~va~aiv~l~~~~~~~~~v~h~~n--~~-~~~~~~l~~~l~ 595 (958)
+++|+.++.+...+...+.++.+.+ ++ ..+++++...+.
T Consensus 208 ~dvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (251)
T PLN00141 208 DQVAEVAVEALLCPESSYKVVEIVARADAPKRSYKDLFASIK 249 (251)
T ss_pred HHHHHHHHHHhcChhhcCcEEEEecCCCCCchhHHHHHHHhh
Confidence 9999999999877665667888885 22 467888877653
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=171.00 Aligned_cols=212 Identities=20% Similarity=0.195 Sum_probs=152.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
++||+++||||+|+||.++|+.|+++|++|++++|+..........+. ...++..+.+|+++.+++.++++.. +
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~-----~ 75 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-LAKKIEDHFGDIRDAAKLRKAIAEF-----K 75 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-hcCCceEEEccCCCHHHHHHHHhhc-----C
Confidence 578999999999999999999999999999999998765444333332 1234667889999999988887753 5
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC------------CCC
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR------------PFA 861 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~------------~~~ 861 (958)
+|++||+||.... ..+.+++...+++|+.|++.+++++.+ ....+++|++||....- +..
T Consensus 76 ~d~vih~A~~~~~----~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~ 147 (349)
T TIGR02622 76 PEIVFHLAAQPLV----RKSYADPLETFETNVMGTVNLLEAIRA----IGSVKAVVNVTSDKCYRNDEWVWGYRETDPLG 147 (349)
T ss_pred CCEEEECCccccc----ccchhCHHHHHHHhHHHHHHHHHHHHh----cCCCCEEEEEechhhhCCCCCCCCCccCCCCC
Confidence 8999999996422 234466778999999999999987632 22246999999964321 123
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCC----CCcEEEEEECCcccCCCCCCC--CChhhhhhhc------c---ccCCCCCC
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSD----RNIKVTCIQAGDVKTELLSHS--TDRDVVDKYD------I---SKAVPVLT 926 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~----~gIrv~~v~PG~v~T~~~~~~--~~~~~~~~~~------~---~~~~~~~~ 926 (958)
+...|+.||.+.+.+++.++.++.+ .|++++++.||.+..+-.... .-+....... . .....++-
T Consensus 148 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~rd~i~ 227 (349)
T TIGR02622 148 GHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVIIRNPDATRPWQH 227 (349)
T ss_pred CCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEECCCCcccceee
Confidence 4567999999999999999988755 489999999999987632110 0011111100 0 01123466
Q ss_pred HHHHHHHHHHHhc
Q psy4557 927 TKEISQSIIFALL 939 (958)
Q Consensus 927 p~~ia~~i~~~l~ 939 (958)
.+|++++++.++.
T Consensus 228 v~D~a~a~~~~~~ 240 (349)
T TIGR02622 228 VLEPLSGYLLLAE 240 (349)
T ss_pred HHHHHHHHHHHHH
Confidence 7899999887654
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=164.29 Aligned_cols=226 Identities=15% Similarity=0.140 Sum_probs=155.4
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||+|++++++|+++ +.+|++++|..+... ...+..+.+|+. +.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R~~~~~~---------------------~~~~~~~~~d~~-------d~ 51 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLVASRSSSSSA---------------------GPNEKHVKFDWL-------DE 51 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEEEeCCCcccc---------------------CCCCccccccCC-------CH
Confidence 4899999999999999999876 468999999754210 123455677775 34
Q ss_pred HHHHHHh------cc-cCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCccccc
Q psy4557 401 DEYVSLS------YE-IDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYT 473 (958)
Q Consensus 401 ~~~~~l~------~~-vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~ 473 (958)
+.+.... .. +|.|||++.... . .+..++++++.|+..++++|+|+||..++...
T Consensus 52 ~~l~~a~~~~~~~~g~~d~v~~~~~~~~-----~-----~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~--------- 112 (285)
T TIGR03649 52 DTWDNPFSSDDGMEPEISAVYLVAPPIP-----D-----LAPPMIKFIDFARSKGVRRFVLLSASIIEKGG--------- 112 (285)
T ss_pred HHHHHHHhcccCcCCceeEEEEeCCCCC-----C-----hhHHHHHHHHHHHHcCCCEEEEeeccccCCCC---------
Confidence 5565555 45 999999987431 1 13456789999999999999999986542110
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc--CCCCCcC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA--PDIDWYL 551 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~--P~~~~~~ 551 (958)
.++...|.++... .|++++++||+.++.+..... ........|.+ +..+..+
T Consensus 113 ---------------~~~~~~~~~l~~~--~gi~~tilRp~~f~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~ 166 (285)
T TIGR03649 113 ---------------PAMGQVHAHLDSL--GGVEYTVLRPTWFMENFSEEF---------HVEAIRKENKIYSATGDGKI 166 (285)
T ss_pred ---------------chHHHHHHHHHhc--cCCCEEEEeccHHhhhhcccc---------cccccccCCeEEecCCCCcc
Confidence 0122234444321 499999999998875431110 01111122222 2335678
Q ss_pred CcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH-cCCC--ccccChHHHHHHHhccCCCc
Q psy4557 552 EFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT-YGYN--IKTVPYEKWFHKLNKRELSE 620 (958)
Q Consensus 552 ~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~~--~~~v~~~eW~~~~~~~~~~~ 620 (958)
+|+.+++++++++.+...+...+.+|++..|..+++.|+++.+.+ .|.+ ...+|.++|.+.+.....+.
T Consensus 167 ~~v~~~Dva~~~~~~l~~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~l~~~g~~~ 238 (285)
T TIGR03649 167 PFVSADDIARVAYRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELAQRLQSFGMPE 238 (285)
T ss_pred CcccHHHHHHHHHHHhcCCCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHHcCCCH
Confidence 999999999999998877655678999999999999999999976 4665 45788999988765444333
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-15 Score=152.41 Aligned_cols=182 Identities=24% Similarity=0.287 Sum_probs=136.8
Q ss_pred eEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcHH
Q psy4557 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQD 401 (958)
Q Consensus 322 VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~~ 401 (958)
|+|||||||+|.+|+++|++++ .+|++++|..... .+ ..+++++.||+.+ .+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~~~------~~--------------~~~~~~~~~d~~d-------~~ 52 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPSKA------ED--------------SPGVEIIQGDLFD-------PD 52 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGH------HH--------------CTTEEEEESCTTC-------HH
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCchhc------cc--------------ccccccceeeehh-------hh
Confidence 7999999999999999999886 8999999975421 10 3689999999863 46
Q ss_pred HHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCCCC
Q psy4557 402 EYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFM 481 (958)
Q Consensus 402 ~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~ 481 (958)
.+.....++|+|||+++.... .+..++++++.|...++++++++||.++|......+.....
T Consensus 53 ~~~~al~~~d~vi~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~-------- 114 (183)
T PF13460_consen 53 SVKAALKGADAVIHAAGPPPK----------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDK-------- 114 (183)
T ss_dssp HHHHHHTTSSEEEECCHSTTT----------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTC--------
T ss_pred hhhhhhhhcchhhhhhhhhcc----------cccccccccccccccccccceeeeccccCCCCCcccccccc--------
Confidence 778888899999999965322 27889999999999999999999999998754322111100
Q ss_pred CCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHH
Q psy4557 482 TTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTK 561 (958)
Q Consensus 482 ~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~ 561 (958)
.....|...|..+|.++. +.|++++++||+.++|......--..+ .......++.++++|+
T Consensus 115 ~~~~~~~~~~~~~e~~~~---~~~~~~~ivrp~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~~DvA~ 175 (183)
T PF13460_consen 115 PIFPEYARDKREAEEALR---ESGLNWTIVRPGWIYGNPSRSYRLIKE----------------GGPQGVNFISREDVAK 175 (183)
T ss_dssp GGGHHHHHHHHHHHHHHH---HSTSEEEEEEESEEEBTTSSSEEEESS----------------TSTTSHCEEEHHHHHH
T ss_pred cchhhhHHHHHHHHHHHH---hcCCCEEEEECcEeEeCCCcceeEEec----------------cCCCCcCcCCHHHHHH
Confidence 111468999999998885 349999999999999986432100000 2223458899999999
Q ss_pred HHHHHhc
Q psy4557 562 SLVQLTT 568 (958)
Q Consensus 562 aiv~l~~ 568 (958)
+|+.++.
T Consensus 176 ~~~~~l~ 182 (183)
T PF13460_consen 176 AIVEALE 182 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9998764
|
... |
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7e-15 Score=161.18 Aligned_cols=228 Identities=16% Similarity=0.128 Sum_probs=147.1
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++|+++|+++ +.+|+++.|... ..+.+.+ ....++.++.+|++.+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~-g~~v~~~~r~~~---~~~~~~~------------~~~~~~~~~~~D~~~~------ 60 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLAR-GDRVAATVRRPD---ALDDLKA------------RYGDRLWVLQLDVTDS------ 60 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCCHH---HHHHHHH------------hccCceEEEEccCCCH------
Confidence 47999999999999999999976 468888888521 1122211 1124678889998853
Q ss_pred HHHHHHHh-------cccCEEEEcccccCccc-------ChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEeccccc
Q psy4557 400 QDEYVSLS-------YEIDMIIHAAAFVNLIL-------PYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDSIY 461 (958)
Q Consensus 400 ~~~~~~l~-------~~vd~IiH~AA~v~~~~-------~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~v~ 461 (958)
+....+. ..+|+|||||+...... .+.....+|+.|+.++++.+ +..+.++|+++||.+..
T Consensus 61 -~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~ 139 (276)
T PRK06482 61 -AAVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQ 139 (276)
T ss_pred -HHHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccc
Confidence 3333322 35899999999764321 23456679999999999886 44456789999986532
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCce---eccCCCCC--cC-hhHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNI---GGSLEFKN--WN-LVDLN 531 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i---~G~~~~g~--~n-~~d~~ 531 (958)
... ...+.|+.||+..|.+++..+ ..|++++++|||.+ +|...... .. ..+..
T Consensus 140 ~~~-----------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~ 202 (276)
T PRK06482 140 IAY-----------------PGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTP 202 (276)
T ss_pred cCC-----------------CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchh
Confidence 110 123579999999999887643 25999999999988 44322110 00 01111
Q ss_pred HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHH
Q psy4557 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVL 594 (958)
Q Consensus 532 ~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l 594 (958)
...+......+.. .. +..+|.++++++.+..... .+..||+.+....+..+++..+
T Consensus 203 ~~~~~~~~~~~~~-----~~-~~d~~~~~~a~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~ 258 (276)
T PRK06482 203 VGDLRRALADGSF-----AI-PGDPQKMVQAMIASADQTP-APRRLTLGSDAYASIRAALSER 258 (276)
T ss_pred hHHHHHHHhhccC-----CC-CCCHHHHHHHHHHHHcCCC-CCeEEecChHHHHHHHHHHHHH
Confidence 1112111222211 11 3468999999999886543 3567999987777666665544
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=158.22 Aligned_cols=207 Identities=16% Similarity=0.099 Sum_probs=144.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh--hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID--RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~--~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++|+++||||+|+||+.++++|+++|++|+++.|+.+ ...+....+...+.++.++.+|+++.+++.+++ .
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l-------~ 77 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDAL-------K 77 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHH-------c
Confidence 4789999999999999999999999999999998643 233333333222345778889999998876544 2
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC-C--C-------
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-A--G------- 862 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-~--~------- 862 (958)
..|.+++.++... +.+ ..++.++++|+.|++.+++++.+.+ ..++||++||.++.... + .
T Consensus 78 ~~d~v~~~~~~~~-----~~~-~~~~~~~~~nv~gt~~ll~aa~~~~----~v~riV~~SS~~a~~~~~~~~~~~~~~~E 147 (297)
T PLN02583 78 GCSGLFCCFDPPS-----DYP-SYDEKMVDVEVRAAHNVLEACAQTD----TIEKVVFTSSLTAVIWRDDNISTQKDVDE 147 (297)
T ss_pred CCCEEEEeCccCC-----ccc-ccHHHHHHHHHHHHHHHHHHHHhcC----CccEEEEecchHheecccccCCCCCCCCc
Confidence 4788887665432 111 2468899999999999999987653 23699999998764211 0 0
Q ss_pred --C----------hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhh---hccccCCCCCCH
Q psy4557 863 --L----------AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDK---YDISKAVPVLTT 927 (958)
Q Consensus 863 --~----------~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~---~~~~~~~~~~~p 927 (958)
+ ..|+.||...+.+...++.+ .|+++++|.||.|..+....... .... .........+..
T Consensus 148 ~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~---~gi~~v~lrp~~v~Gp~~~~~~~--~~~~~~~~~~~~~~~~v~V 222 (297)
T PLN02583 148 RSWSDQNFCRKFKLWHALAKTLSEKTAWALAMD---RGVNMVSINAGLLMGPSLTQHNP--YLKGAAQMYENGVLVTVDV 222 (297)
T ss_pred ccCCCHHHHhhcccHHHHHHHHHHHHHHHHHHH---hCCcEEEEcCCcccCCCCCCchh--hhcCCcccCcccCcceEEH
Confidence 1 15888998888888776554 48999999999998875432110 0000 000112346789
Q ss_pred HHHHHHHHHHhcCCCC
Q psy4557 928 KEISQSIIFALLQPSH 943 (958)
Q Consensus 928 ~~ia~~i~~~l~~~~~ 943 (958)
+|+|++++.++..+..
T Consensus 223 ~Dva~a~~~al~~~~~ 238 (297)
T PLN02583 223 NFLVDAHIRAFEDVSS 238 (297)
T ss_pred HHHHHHHHHHhcCccc
Confidence 9999999998876654
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=164.22 Aligned_cols=220 Identities=15% Similarity=0.117 Sum_probs=146.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh-----HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-----LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~-----l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
++++|+++||||+|+||.+++++|+++|++|++++|+.+. ++.+.+.....+.++.++.+|+++.+++.++++.+
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 82 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI 82 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence 5678999999999999999999999999999999887542 22222111112345778899999999988888754
Q ss_pred HHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCcc--CcCC------
Q psy4557 788 LAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNA--GVRP------ 859 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~--g~~~------ 859 (958)
++|+||||||..... ...+.....+++|+.|+..+++++.+.+.+...--++|++||.. |...
T Consensus 83 -----~~d~Vih~A~~~~~~----~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~E~ 153 (340)
T PLN02653 83 -----KPDEVYNLAAQSHVA----VSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPPPQSET 153 (340)
T ss_pred -----CCCEEEECCcccchh----hhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCCCCCCC
Confidence 489999999975432 12344577889999999999999988764211112788888753 2211
Q ss_pred --CCCChhhhHHHHHHHHHHHHHHHHhCC---CCcEEEEEECCcccCCCCCCCCC--hhhhhh--hcc-----ccCCCCC
Q psy4557 860 --FAGLAVYTGTKYFIEGISGALRQEVSD---RNIKVTCIQAGDVKTELLSHSTD--RDVVDK--YDI-----SKAVPVL 925 (958)
Q Consensus 860 --~~~~~~Y~asKaa~~~l~~~la~el~~---~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~--~~~-----~~~~~~~ 925 (958)
......|+.||.+.+.+++.++.+++- .++.++.+.||...+-+...... ...... ... .....++
T Consensus 154 ~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i 233 (340)
T PLN02653 154 TPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWG 233 (340)
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecce
Confidence 113567999999999999999888643 24455666676443311100000 000000 000 0112356
Q ss_pred CHHHHHHHHHHHhcCC
Q psy4557 926 TTKEISQSIIFALLQP 941 (958)
Q Consensus 926 ~p~~ia~~i~~~l~~~ 941 (958)
-.+|+|++++.++..+
T Consensus 234 ~v~D~a~a~~~~~~~~ 249 (340)
T PLN02653 234 FAGDYVEAMWLMLQQE 249 (340)
T ss_pred eHHHHHHHHHHHHhcC
Confidence 8899999999877643
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-14 Score=158.44 Aligned_cols=211 Identities=19% Similarity=0.239 Sum_probs=149.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc--CCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN--APGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
-.||+++||||+|.||..++++|+++|++|+++.|+.+..+.+...... ...++.++.+|+++.+++.++++
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE------ 76 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh------
Confidence 3589999999999999999999999999999999987655544332221 12357788999999988877665
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-CC----------
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-PF---------- 860 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-~~---------- 860 (958)
.+|++||+||..... . .+.+..++++|+.|+..+++++.. ..+-++||++||.++.. +.
T Consensus 77 -~~d~vih~A~~~~~~---~--~~~~~~~~~~nv~gt~~ll~~~~~----~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~ 146 (322)
T PLN02986 77 -GCDAVFHTASPVFFT---V--KDPQTELIDPALKGTINVLNTCKE----TPSVKRVILTSSTAAVLFRQPPIEANDVVD 146 (322)
T ss_pred -CCCEEEEeCCCcCCC---C--CCchhhhhHHHHHHHHHHHHHHHh----cCCccEEEEecchhheecCCccCCCCCCcC
Confidence 489999999974321 1 123457899999999998887643 12236999999986431 11
Q ss_pred ------C-----CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC--Chhhhhhhc-c-----ccC
Q psy4557 861 ------A-----GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST--DRDVVDKYD-I-----SKA 921 (958)
Q Consensus 861 ------~-----~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~--~~~~~~~~~-~-----~~~ 921 (958)
| ....|++||.+.+.+.+.+..+. |++++++.|+.+..+...... .......+. . ...
T Consensus 147 E~~~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~---~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~ 223 (322)
T PLN02986 147 ETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDN---GIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRF 223 (322)
T ss_pred cccCCChHHhhccccchHHHHHHHHHHHHHHHHHh---CCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCCCCCcC
Confidence 1 13569999999998888776653 899999999999988643211 111111110 0 011
Q ss_pred CCCCCHHHHHHHHHHHhcCCCC
Q psy4557 922 VPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 922 ~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
...+.++|+|++++.++..+..
T Consensus 224 ~~~v~v~Dva~a~~~al~~~~~ 245 (322)
T PLN02986 224 YRFVDVRDVALAHIKALETPSA 245 (322)
T ss_pred cceeEHHHHHHHHHHHhcCccc
Confidence 2367899999999998877643
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-14 Score=146.68 Aligned_cols=226 Identities=19% Similarity=0.204 Sum_probs=145.7
Q ss_pred eEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcHH
Q psy4557 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQD 401 (958)
Q Consensus 322 VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~~ 401 (958)
|+|||||||||+||+.+|.+. +.+|+.++|....... ++ ...+.. ++
T Consensus 1 IliTGgTGlIG~~L~~~L~~~-gh~v~iltR~~~~~~~--~~----------------~~~v~~-----------~~--- 47 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKG-GHQVTILTRRPPKASQ--NL----------------HPNVTL-----------WE--- 47 (297)
T ss_pred CeEeccccchhHHHHHHHHhC-CCeEEEEEcCCcchhh--hc----------------Cccccc-----------cc---
Confidence 689999999999999998754 5689999998654311 10 011111 11
Q ss_pred HHHHHhc-ccCEEEEcccccC----cccCh-HHHHhhhHHHHHHHHHhhccC--CCccEEEEecccccCCCCC-CCcccc
Q psy4557 402 EYVSLSY-EIDMIIHAAAFVN----LILPY-NALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDSIYPSTSE-NFQEDY 472 (958)
Q Consensus 402 ~~~~l~~-~vd~IiH~AA~v~----~~~~~-~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~v~~~~~~-~~~e~~ 472 (958)
....+.. .+|+|||+|+..= |...+ +.+.+.-+..|+.|.++..+. +++.|+--|.++.||...+ .++|+.
T Consensus 48 ~~~~~~~~~~DavINLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~ 127 (297)
T COG1090 48 GLADALTLGIDAVINLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEES 127 (297)
T ss_pred hhhhcccCCCCEEEECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCC
Confidence 1111222 7999999999742 33333 246778899999999987644 3444555555667886533 244432
Q ss_pred cccCcCCCCCCCCCh-hHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHH-HHh-CCcCCCCC
Q psy4557 473 TVADFDDFMTTTSGY-GQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI-TRL-GYAPDIDW 549 (958)
Q Consensus 473 ~~~~~~~~~~~~~gY-~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~-~~~-g~~P~~~~ 549 (958)
+. .+++ ++.=..=|+....|...|.+++++|.|.|.|+.. |. +..|+... .-+ |.+-+..+
T Consensus 128 ~~---------g~~Fla~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~G-Ga------L~~m~~~fk~glGG~~GsGrQ 191 (297)
T COG1090 128 PP---------GDDFLAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDG-GA------LGKMLPLFKLGLGGKLGSGRQ 191 (297)
T ss_pred CC---------CCChHHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCCC-cc------hhhhcchhhhccCCccCCCCc
Confidence 11 1111 1221122344445566699999999999998652 22 23332211 112 33445668
Q ss_pred cCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 550 YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
++.|+.+|+++++|..+..+.. ....||++.|+|++..+|...|...
T Consensus 192 ~~SWIhieD~v~~I~fll~~~~-lsGp~N~taP~PV~~~~F~~al~r~ 238 (297)
T COG1090 192 WFSWIHIEDLVNAILFLLENEQ-LSGPFNLTAPNPVRNKEFAHALGRA 238 (297)
T ss_pred eeeeeeHHHHHHHHHHHHhCcC-CCCcccccCCCcCcHHHHHHHHHHH
Confidence 8999999999999999887654 3568999999999999999998764
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-14 Score=162.55 Aligned_cols=240 Identities=16% Similarity=0.186 Sum_probs=154.1
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++|||||||||||.+++++|+++ +.+|++++|.... .+++.+.+....++........++.++.||++.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~-G~~Vval~Rn~ek---l~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD----- 149 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKL-GFRVRAGVRSAQR---AESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK----- 149 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCeEEEEeCCHHH---HHHHHHHhhhhccccccccccCceEEEEecCCC-----
Confidence 5678999999999999999999976 4789999986432 222222221111110000112468899999874
Q ss_pred CcHHHHHHHhcccCEEEEcccccCc-ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccC
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNL-ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVAD 476 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~-~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~ 476 (958)
.+.+.....++|+|||||+.... .......+.+|+.|+.+|++.|...++++|+|+||.+++... ....
T Consensus 150 --~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g---~p~~----- 219 (576)
T PLN03209 150 --PDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVG---FPAA----- 219 (576)
T ss_pred --HHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccC---cccc-----
Confidence 35566667889999999986532 123345567899999999999988888999999998763111 0000
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccH
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPV 556 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pV 556 (958)
......+|..+|..+|+.+. ..|++++|+|||.+.++..... .... + . ...+..+ .-.++.-
T Consensus 220 ---~~~sk~~~~~~KraaE~~L~---~sGIrvTIVRPG~L~tp~d~~~-~t~~-v-~-----~~~~d~~----~gr~isr 281 (576)
T PLN03209 220 ---ILNLFWGVLCWKRKAEEALI---ASGLPYTIVRPGGMERPTDAYK-ETHN-L-T-----LSEEDTL----FGGQVSN 281 (576)
T ss_pred ---chhhHHHHHHHHHHHHHHHH---HcCCCEEEEECCeecCCccccc-cccc-e-e-----ecccccc----CCCccCH
Confidence 01223578889999998875 4699999999999986532100 0000 0 0 0001011 1123566
Q ss_pred HHHHHHHHHHhcCcC-CCCceEEecCCCC---CCHHHHHHHH
Q psy4557 557 DFLTKSLVQLTTNVN-NANKIYNFINTNP---IHIKTLVSVL 594 (958)
Q Consensus 557 D~va~aiv~l~~~~~-~~~~v~h~~n~~~---~~~~~l~~~l 594 (958)
++||+.++.++.+.. ..+.+|.++.... .++.+++..+
T Consensus 282 eDVA~vVvfLasd~~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 282 LQVAELMACMAKNRRLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHHHHHHHcCchhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 779999999887553 5578899887432 3455555443
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.6e-15 Score=180.17 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=102.9
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeC----C--C--ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDH----D--G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA 83 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~----~--~--~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la 83 (958)
..++.++|++.++++||++|+.+. + + +.+||+||+++++++|++|++.|+++||||+|+++|+++|++++||
T Consensus 44 ~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA 123 (666)
T PLN02614 44 MDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEA 123 (666)
T ss_pred CCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 347999999999999999999731 1 1 2489999999999999999999999999999999999999999999
Q ss_pred HHHHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 84 IHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 84 ~~k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
|+++|+++||||++++++++++++++++++++|++.+..+.
T Consensus 124 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 164 (666)
T PLN02614 124 CNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISE 164 (666)
T ss_pred HHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHH
Confidence 99999999999999999999999999999999998765443
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-14 Score=153.58 Aligned_cols=221 Identities=14% Similarity=0.077 Sum_probs=142.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||||+||++++++|++++ .+|+++.|.... .+++.+.+.. ...++.++.+|++.+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G-~~v~~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~Dl~~~---- 68 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAG-AAVAIADLNQDG---ANAVADEINK---------AGGKAIGVAMDVTNE---- 68 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCChHH---HHHHHHHHHh---------cCceEEEEECCCCCH----
Confidence 45789999999999999999998764 578888775432 1222222211 124677889998743
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHH----HHHHHHhh-ccCCCccEEEEecc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLA----TKNLIEFS-FLNKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~g----t~~ll~~a-~~~~~k~~~~vST~ 458 (958)
+....+. ..+|+|||||+..+.. .+ ++....+|+.| ++++++++ +..+.++|+++||.
T Consensus 69 ---~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~ 145 (262)
T PRK13394 69 ---DAVNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSV 145 (262)
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcch
Confidence 3333332 3589999999975431 12 34556789999 77778777 66667899999986
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHH---
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLN--- 531 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~--- 531 (958)
+.+... .....|+.||...+.+++... ..|++++++|||.++++...... .+..
T Consensus 146 ~~~~~~-----------------~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~--~~~~~~~ 206 (262)
T PRK13394 146 HSHEAS-----------------PLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQI--PEQAKEL 206 (262)
T ss_pred hhcCCC-----------------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhh--Hhhhhcc
Confidence 432110 123579999999998886543 35899999999999987521110 0000
Q ss_pred ----HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 532 ----LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 532 ----~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
....+.... + .....+|+.++++++++..++.... ..+.+|++.+.
T Consensus 207 ~~~~~~~~~~~~~-~----~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g 258 (262)
T PRK13394 207 GISEEEVVKKVML-G----KTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHG 258 (262)
T ss_pred CCChHHHHHHHHh-c----CCCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCc
Confidence 001111110 1 1224578999999999999876432 23678888764
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=149.24 Aligned_cols=218 Identities=16% Similarity=0.186 Sum_probs=143.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
....++|+++||||+|+||++++++|+++|++|+++.|+.+++.+.. . ....+.++++|+++.. ..+ .+.
T Consensus 12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~-~~~~~~~~~~Dl~d~~--~~l----~~~ 81 (251)
T PLN00141 12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL---P-QDPSLQIVRADVTEGS--DKL----VEA 81 (251)
T ss_pred cccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc---c-cCCceEEEEeeCCCCH--HHH----HHH
Confidence 34567899999999999999999999999999999999987654432 1 1235778899998731 122 222
Q ss_pred c-CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc---CCCCCChhh
Q psy4557 791 L-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV---RPFAGLAVY 866 (958)
Q Consensus 791 ~-g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~---~~~~~~~~Y 866 (958)
+ .++|++|+|+|...... .. ..+++|+.|+..+++++. ..+.++||++||.... .+.+....|
T Consensus 82 ~~~~~d~vi~~~g~~~~~~--~~------~~~~~n~~~~~~ll~a~~-----~~~~~~iV~iSS~~v~g~~~~~~~~~~~ 148 (251)
T PLN00141 82 IGDDSDAVICATGFRRSFD--PF------APWKVDNFGTVNLVEACR-----KAGVTRFILVSSILVNGAAMGQILNPAY 148 (251)
T ss_pred hhcCCCEEEECCCCCcCCC--CC------CceeeehHHHHHHHHHHH-----HcCCCEEEEEccccccCCCcccccCcch
Confidence 3 36999999999743111 11 124678888888877753 2345799999998632 223334557
Q ss_pred hHHHHHHHHH-HHHHHHH-hCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC-
Q psy4557 867 TGTKYFIEGI-SGALRQE-VSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH- 943 (958)
Q Consensus 867 ~asKaa~~~l-~~~la~e-l~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~- 943 (958)
.+.|.+...+ .+..+.+ +...|+++++|.||++.+++....... .. ........++++|+|+.++.++.++..
T Consensus 149 ~~~~~~~~~~~~k~~~e~~l~~~gi~~~iirpg~~~~~~~~~~~~~---~~-~~~~~~~~i~~~dvA~~~~~~~~~~~~~ 224 (251)
T PLN00141 149 IFLNLFGLTLVAKLQAEKYIRKSGINYTIVRPGGLTNDPPTGNIVM---EP-EDTLYEGSISRDQVAEVAVEALLCPESS 224 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECCCccCCCCCceEEE---CC-CCccccCcccHHHHHHHHHHHhcChhhc
Confidence 7766544433 3333322 467799999999999987753211100 00 000112358999999999999887764
Q ss_pred ccccceEecCCC
Q psy4557 944 SAVNSILIEPPL 955 (958)
Q Consensus 944 ~~i~~~~i~p~~ 955 (958)
..+..+...|+.
T Consensus 225 ~~~~~~~~~~~~ 236 (251)
T PLN00141 225 YKVVEIVARADA 236 (251)
T ss_pred CcEEEEecCCCC
Confidence 455666665543
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=148.89 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=139.8
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||+||||++++++|+++ +.+|+.+.|.... ..+.+.+.+... ....+.++.+|++.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~-g~~v~~~~r~~~~--~~~~~~~~~~~~--------~~~~~~~~~~Dl~~------ 68 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAA-GYRVAIHYHRSAA--EADALAAELNAL--------RPGSAAALQADLLD------ 68 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHH--HHHHHHHHHHhh--------cCCceEEEEcCCCC------
Confidence 468999999999999999999876 5788888876432 112222211111 12357888999874
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCc---c----cChHHHHhhhHHHHHHHHHhhccC---CCccEEEEeccccc
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNL---I----LPYNALYKSNVLATKNLIEFSFLN---KIKSFHYVSTDSIY 461 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~---~----~~~~~~~~~NV~gt~~ll~~a~~~---~~k~~~~vST~~v~ 461 (958)
.+....+. ..+|+|||+|+.... . ..++...++|+.|+.++++.+... ....++++|+ +.
T Consensus 69 -~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~--~~ 145 (249)
T PRK09135 69 -PDALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD--IH 145 (249)
T ss_pred -HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC--hh
Confidence 24444433 358999999996431 1 123456789999999999988531 1123444433 22
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhh---CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ---MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI 538 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~---~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~ 538 (958)
+. .+..+.+.|+.||..+|.+++..++ .+++++++|||.++|+.....++. .. .+..
T Consensus 146 ~~---------------~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~~~--~~---~~~~ 205 (249)
T PRK09135 146 AE---------------RPLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSFDE--EA---RQAI 205 (249)
T ss_pred hc---------------CCCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccCCH--HH---HHHH
Confidence 11 0113456899999999999987542 379999999999999875332221 11 1111
Q ss_pred HHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc-CCCCceEEecCCCCCC
Q psy4557 539 TRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV-NNANKIYNFINTNPIH 586 (958)
Q Consensus 539 ~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~-~~~~~v~h~~n~~~~~ 586 (958)
.. + .| . .-+.++|++++++..++... ...+.+||+.+...++
T Consensus 206 ~~-~-~~-~---~~~~~~~d~a~~~~~~~~~~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 206 LA-R-TP-L---KRIGTPEDIAEAVRFLLADASFITGQILAVDGGRSLT 248 (249)
T ss_pred Hh-c-CC-c---CCCcCHHHHHHHHHHHcCccccccCcEEEECCCeecc
Confidence 11 1 12 1 11246899999997666432 3367899999876544
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=156.94 Aligned_cols=209 Identities=22% Similarity=0.230 Sum_probs=149.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc--CCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN--APGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~--~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+.|+++||||+|.||..++++|+++|++|++++|+.+....+...... ...++.++.+|+++.+.+.++++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~------- 76 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR------- 76 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh-------
Confidence 467899999999999999999999999999999987766655433321 12357788999999988776654
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC----CC-------
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP----FA------- 861 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~----~~------- 861 (958)
.+|++||+|+.... .. .+.++..+++|+.|++.+++++.+.. ..++||++||.....+ .+
T Consensus 77 ~~d~ViH~A~~~~~---~~--~~~~~~~~~~Nv~gt~~ll~aa~~~~----~~~r~v~~SS~~~~~~~~~~~~~~~E~~~ 147 (351)
T PLN02650 77 GCTGVFHVATPMDF---ES--KDPENEVIKPTVNGMLSIMKACAKAK----TVRRIVFTSSAGTVNVEEHQKPVYDEDCW 147 (351)
T ss_pred CCCEEEEeCCCCCC---CC--CCchhhhhhHHHHHHHHHHHHHHhcC----CceEEEEecchhhcccCCCCCCccCcccC
Confidence 47999999986431 11 12346789999999999999886532 1359999999753211 01
Q ss_pred -----------CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh----------cccc
Q psy4557 862 -----------GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY----------DISK 920 (958)
Q Consensus 862 -----------~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~----------~~~~ 920 (958)
....|+.||.+.+.+.+.++.+ +|++++.+.|+.+..|.............. ....
T Consensus 148 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (351)
T PLN02650 148 SDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAE---NGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIK 224 (351)
T ss_pred CchhhhhccccccchHHHHHHHHHHHHHHHHHH---cCCeEEEECCCceECCCCCCCCCccHHHHHHHhcCCccccCcCC
Confidence 1236999999999999888766 589999999999998864322111111100 0001
Q ss_pred CCCCCCHHHHHHHHHHHhcCCC
Q psy4557 921 AVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 921 ~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
...++..+|+|++++.++..+.
T Consensus 225 ~r~~v~V~Dva~a~~~~l~~~~ 246 (351)
T PLN02650 225 QGQFVHLDDLCNAHIFLFEHPA 246 (351)
T ss_pred CcceeeHHHHHHHHHHHhcCcC
Confidence 1246789999999999887654
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-14 Score=153.60 Aligned_cols=221 Identities=12% Similarity=0.106 Sum_probs=142.1
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++||||||||+||++|++.|++++ .+|+++.|.... .+++.+.+.. ...++.++.+|++.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g-~~v~~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~D~~~~------ 62 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAG-ANVVVNDLGEAG---AEAAAKVATD---------AGGSVIYLVADVTKE------ 62 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCC-CEEEEEeCCHHH---HHHHHHHHHh---------cCCceEEEECCCCCH------
Confidence 479999999999999999999764 588888886322 2223222211 124688889998742
Q ss_pred HHHHHHH-------hcccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEeccccc
Q psy4557 400 QDEYVSL-------SYEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDSIY 461 (958)
Q Consensus 400 ~~~~~~l-------~~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~v~ 461 (958)
+....+ ...+|+|||+|+..... . .++.....|+.|+.++++.+ .+.+.++|+|+||.+.+
T Consensus 63 -~~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~ 141 (255)
T TIGR01963 63 -DEIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGL 141 (255)
T ss_pred -HHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhc
Confidence 333222 34689999999975431 1 23456678999988887765 44556789999987554
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCC-----cChhHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKN-----WNLVDLNL 532 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~-----~n~~d~~~ 532 (958)
... .....|+.||...|.+++... ..|++++++|||.++++..... +...-...
T Consensus 142 ~~~-----------------~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~ 204 (255)
T TIGR01963 142 VAS-----------------PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEE 204 (255)
T ss_pred CCC-----------------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCch
Confidence 311 112479999999998886543 2489999999999988742110 00000000
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
.+...... + .....++++++++|++++.++... ...+++|++.+.
T Consensus 205 ~~~~~~~~----~-~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g 251 (255)
T TIGR01963 205 QVIREVML----P-GQPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDGG 251 (255)
T ss_pred HHHHHHHH----c-cCccccCcCHHHHHHHHHHHcCccccCccceEEEEcCc
Confidence 00000010 1 112356899999999999988653 224678988764
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-13 Score=153.86 Aligned_cols=214 Identities=23% Similarity=0.259 Sum_probs=151.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
-++++++||||+|.||..++++|+++|++|++++|+.++.+.+...+.. ...+.++.+|+++.+++.++++ .
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVK-------G 79 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHc-------C
Confidence 4678999999999999999999999999999999987766655544432 3457788999999988776653 4
Q ss_pred ccEEEEccccCCCcc-ccCCCHHHH--HHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC----------
Q psy4557 794 IDILVNNAGVMYFTL-MEKYKLEEW--NAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF---------- 860 (958)
Q Consensus 794 iDilInnAG~~~~~~-~~~~~~~~~--~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~---------- 860 (958)
+|++||+||...... ....+++.+ ..++++|+.|++.+++++.+.. ..+++|++||.+..-..
T Consensus 80 ~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~----~~~~~v~~SS~~vyg~~~~~~~~~~~~ 155 (353)
T PLN02896 80 CDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK----TVKRVVFTSSISTLTAKDSNGRWRAVV 155 (353)
T ss_pred CCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC----CccEEEEEechhhccccccCCCCCCcc
Confidence 799999999864321 122344443 5788999999999998876532 23699999997544210
Q ss_pred ---------------CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh---hhhhhh-cccc-
Q psy4557 861 ---------------AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR---DVVDKY-DISK- 920 (958)
Q Consensus 861 ---------------~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~---~~~~~~-~~~~- 920 (958)
+....|+.||.+.+.+.+.++.+. |+++.++.|+.|..|........ ...... ....
T Consensus 156 ~E~~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~ 232 (353)
T PLN02896 156 DETCQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKEN---GIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKL 232 (353)
T ss_pred CcccCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHc---CCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccc
Confidence 112379999999999988776654 79999999988887753321110 000000 0000
Q ss_pred ------------CCCCCCHHHHHHHHHHHhcCCC
Q psy4557 921 ------------AVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 921 ------------~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
...++..+|+|++++.++..+.
T Consensus 233 ~~~~~~~~~~~~~~dfi~v~Dva~a~~~~l~~~~ 266 (353)
T PLN02896 233 FSILSAVNSRMGSIALVHIEDICDAHIFLMEQTK 266 (353)
T ss_pred cccccccccccCceeEEeHHHHHHHHHHHHhCCC
Confidence 0135789999999999876543
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.8e-14 Score=153.87 Aligned_cols=232 Identities=14% Similarity=0.098 Sum_probs=150.5
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||||+||++++++|+++ +.+|+++.|.... .+.+.+ ....++.++.+|++.+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~-g~~V~~~~r~~~~---~~~~~~------------~~~~~~~~~~~D~~~~----- 61 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALER-GDRVVATARDTAT---LADLAE------------KYGDRLLPLALDVTDR----- 61 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEECCHHH---HHHHHH------------hccCCeeEEEccCCCH-----
Confidence 357999999999999999999876 4688888885321 122211 1124677888998743
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEecccc
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~v 460 (958)
+....+. ..+|+|||||+..... ..++...++|+.|+..+++.+ .+.+.++++++||.+.
T Consensus 62 --~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~ 139 (275)
T PRK08263 62 --AAVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGG 139 (275)
T ss_pred --HHHHHHHHHHHHHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhh
Confidence 3333332 3689999999976431 234566789999998887765 3445578999998766
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCC-CCc--ChhHHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEF-KNW--NLVDLNLY 533 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~-g~~--n~~d~~~~ 533 (958)
+.+. .....|+.||+..|.+.+..+ ..|++++++|||.+..+... +.. ........
T Consensus 140 ~~~~-----------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~ 202 (275)
T PRK08263 140 ISAF-----------------PMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDT 202 (275)
T ss_pred cCCC-----------------CCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhh
Confidence 5321 112469999999998886532 36999999999988765421 111 11111111
Q ss_pred HHHHHHHhCCcCCCCCcCCc-ccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 534 ILKAITRLGYAPDIDWYLEF-TPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~-~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
+...... + .| ...+ +.+++++++++.+.......+..|+...+.++++.++.+.+..
T Consensus 203 ~~~~~~~-~-~~----~~~~~~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (275)
T PRK08263 203 LREELAE-Q-WS----ERSVDGDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLAT 260 (275)
T ss_pred HHHHHHH-H-HH----hccCCCCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHH
Confidence 1111111 0 11 1123 6789999999999877655556666666677888888777654
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=174.05 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=104.9
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.++|.+.++.+|+++|+++ +++++||+||+++++++|++|.++|+++||+|+|+++|++++++++|||+++|++++
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~-~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~v 92 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIY-GKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLN 92 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEE-CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEe
Confidence 4688899999999999999986 467899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
||||.++.+++.++|+.++++++|+++++.+.+
T Consensus 93 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 125 (579)
T PLN03102 93 PINTRLDATSIAAILRHAKPKILFVDRSFEPLA 125 (579)
T ss_pred eccccCCHHHHHHHHhccCCeEEEEChhhHHHH
Confidence 999999999999999999999999987665433
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=174.39 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=103.1
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
-++.++|+++++++|+++|+++ +++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|++++
T Consensus 7 ~~~~~~~~~~~~~~p~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~v 85 (563)
T PLN02860 7 AHICQCLTRLATLRGNAVVTIS-GNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVA 85 (563)
T ss_pred hHHHHHHHHHHHhcCCceEEec-CCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEE
Confidence 4689999999999999999986 467899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
|||+.++.+++.+++++++++++++++++
T Consensus 86 pl~~~~~~~~l~~~l~~~~~~~i~~~~~~ 114 (563)
T PLN02860 86 PLNYRWSFEEAKSAMLLVRPVMLVTDETC 114 (563)
T ss_pred eCCcccCHHHHHHHHHhcCceEEEEeccc
Confidence 99999999999999999999999998764
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=176.36 Aligned_cols=112 Identities=21% Similarity=0.375 Sum_probs=102.6
Q ss_pred ccHHHHHHHHHHhCCCCeEEEe----CC--C--ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHH
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVD----HD--G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~----~~--~--~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~ 84 (958)
.++.++|.+.++++|+++|+.. .+ + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|++++|||
T Consensus 43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 122 (660)
T PLN02861 43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (660)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 4789999999999999999953 11 1 36999999999999999999999999999999999999999999999
Q ss_pred HHHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 85 HKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 85 ~k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
+++|+++||||++++.++++|+|++++++++|++.+..+.
T Consensus 123 ~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~ 162 (660)
T PLN02861 123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISS 162 (660)
T ss_pred HHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHH
Confidence 9999999999999999999999999999999998765443
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-14 Score=172.14 Aligned_cols=111 Identities=23% Similarity=0.388 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEec
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vP 93 (958)
++.++|+++++++||++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++||
T Consensus 50 ~~~~~~~~~a~~~pd~~Al~~~-~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 128 (549)
T PRK07788 50 PFAGLVAHAARRAPDRAALIDE-RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIIL 128 (549)
T ss_pred hHHHHHHHHHHHCCCceEEEEC-CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence 6899999999999999999874 578999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 94 ln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+|+.++.+++.+++++++++++|+++++.+.+
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 160 (549)
T PRK07788 129 LNTGFSGPQLAEVAAREGVKALVYDDEFTDLL 160 (549)
T ss_pred eCCCCCHHHHHHHHHhcCCcEEEECchhHHHH
Confidence 99999999999999999999999998776544
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-13 Score=147.61 Aligned_cols=219 Identities=14% Similarity=0.155 Sum_probs=140.5
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||+|+||.+++++|++++ .+|++..|.... ...+.+.+.. ...++.++.+|++.+
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G-~~V~~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~Dl~~~---- 71 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAG-FPVALGARRVEK---CEELVDKIRA---------DGGEAVAFPLDVTDP---- 71 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHH---HHHHHHHHHh---------cCCeEEEEECCCCCH----
Confidence 34689999999999999999999764 688887775321 1122211111 124677888998743
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
+....+. ..+|+|||+|+..... ..+.....+|+.|+.++++.+. ..+..+|+++||..
T Consensus 72 ---~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~ 148 (274)
T PRK07775 72 ---DSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDV 148 (274)
T ss_pred ---HHHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChH
Confidence 3333332 3689999999975421 1233456799999999987764 23345799999986
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+.+. .....|+.||+..|.+++..+ ..|++++++|||.+..+.... .. .+....++
T Consensus 149 ~~~~~-----------------~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~-~~-~~~~~~~~ 209 (274)
T PRK07775 149 ALRQR-----------------PHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWS-LP-AEVIGPML 209 (274)
T ss_pred hcCCC-----------------CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCccccc-CC-hhhhhHHH
Confidence 65421 113469999999999987643 249999999999875432111 11 12122222
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEec
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFI 580 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~ 580 (958)
......+. .....++++|++|++++.+..++. .+.+||+.
T Consensus 210 ~~~~~~~~----~~~~~~~~~~dva~a~~~~~~~~~-~~~~~~~~ 249 (274)
T PRK07775 210 EDWAKWGQ----ARHDYFLRASDLARAITFVAETPR-GAHVVNME 249 (274)
T ss_pred HHHHHhcc----cccccccCHHHHHHHHHHHhcCCC-CCCeeEEe
Confidence 22222221 113457999999999999886653 35577765
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-13 Score=144.49 Aligned_cols=217 Identities=13% Similarity=0.108 Sum_probs=144.8
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||||++|++|++.|++++ .+|..+.|.... ..+.+.+... ....++.++.+|++.+
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~D~~~~----- 68 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAG-ADVVVHYRSDEE--AAEELVEAVE---------ALGRRAQAVQADVTDK----- 68 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCCHH--HHHHHHHHHH---------hcCCceEEEECCcCCH-----
Confidence 4689999999999999999998764 467666665432 1222222211 1135788899998743
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCccc-------ChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEecccc
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNLIL-------PYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~~~-------~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~v 460 (958)
+....+. ..+|.|||+|+...... .+.....+|+.|+.++++.+ ...+.++|+++||.+.
T Consensus 69 --~~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~ 146 (249)
T PRK12825 69 --AALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAG 146 (249)
T ss_pred --HHHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence 3333332 46899999999654321 23456778999999998876 3455689999999876
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
+... .....|+.||...|.+++... ..|++++++|||.++|+........ ....
T Consensus 147 ~~~~-----------------~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~-----~~~~ 204 (249)
T PRK12825 147 LPGW-----------------PGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIEE-----AREA 204 (249)
T ss_pred CCCC-----------------CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccch-----hHHh
Confidence 5321 123479999999998886532 2599999999999999764222111 1111
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN 583 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~ 583 (958)
. ....| ...++.++++++++..+..... ..+++|++.+..
T Consensus 205 ~---~~~~~----~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~g~ 246 (249)
T PRK12825 205 K---DAETP----LGRSGTPEDIARAVAFLCSDASDYITGQVIEVTGGV 246 (249)
T ss_pred h---hccCC----CCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCCE
Confidence 0 00112 2237889999999999886542 357899998653
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=150.03 Aligned_cols=223 Identities=11% Similarity=0.037 Sum_probs=140.9
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||||++|++++++|+++ +.+|+++.|..... +++.+.+.. ...++.++.+|++.+
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~-g~~v~~~~r~~~~~---~~~~~~~~~---------~~~~~~~~~~Dl~~~----- 65 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKE-GAKVVIADLNDEAA---AAAAEALQK---------AGGKAIGVAMDVTDE----- 65 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHH---HHHHHHHHh---------cCCcEEEEEcCCCCH-----
Confidence 468999999999999999999976 56898888864321 222221111 135788889998743
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHH----HhhccCCCccEEEEecccc
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLI----EFSFLNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll----~~a~~~~~k~~~~vST~~v 460 (958)
+....+. ..+|+|||+|+..+.. ..++....+|+.|+.+++ ......+.++|+|+||...
T Consensus 66 --~~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~ 143 (258)
T PRK12429 66 --EAINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHG 143 (258)
T ss_pred --HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence 3443333 3689999999965432 123345678999955554 4444456689999998754
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHH---
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY--- 533 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~--- 533 (958)
+... ...+.|+.+|...+.+++... ..|+.+.++|||.+.++...+.. .+....
T Consensus 144 ~~~~-----------------~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~--~~~~~~~~~ 204 (258)
T PRK12429 144 LVGS-----------------AGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQI--PDLAKERGI 204 (258)
T ss_pred ccCC-----------------CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhh--hhhccccCC
Confidence 3211 124579999999998876532 35899999999999886532210 000000
Q ss_pred -HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 534 -ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 534 -l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
........ +........+++++++|++++.++.... ..+++|++.+.
T Consensus 205 ~~~~~~~~~--~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 205 SEEEVLEDV--LLPLVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred ChHHHHHHH--HhccCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 00000000 0011123568999999999998876432 23678888754
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-14 Score=170.12 Aligned_cols=114 Identities=27% Similarity=0.456 Sum_probs=105.0
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCc-eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGR-SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~-~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
..++.+.+.+.++.+|+++|+++.+.. ++||+||+++++++|++|++.|+++||||+|+++|++++++++|||+++|++
T Consensus 10 ~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav 89 (534)
T COG0318 10 ELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAV 89 (534)
T ss_pred cccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEE
Confidence 457899999999999999999874332 2999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
.|||||+++..++.++++++++++++++..+.+..
T Consensus 90 ~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 124 (534)
T COG0318 90 AVPLNPRLTPRELAYILNDAGAKVLITSAEFAALL 124 (534)
T ss_pred EeecCcccCHHHHHHHHHhcCCeEEEEcccchhHH
Confidence 99999999999999999999999999998754443
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-14 Score=175.67 Aligned_cols=114 Identities=20% Similarity=0.271 Sum_probs=103.7
Q ss_pred cccHHHHHHHHHHhCCCCeEEEe---CCC-----ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVD---HDG-----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA 83 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~---~~~-----~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la 83 (958)
..++.++|++.++++|+++|+.. .++ +.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++||
T Consensus 43 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 122 (651)
T PLN02736 43 IGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHA 122 (651)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 35799999999999999999832 121 3599999999999999999999999999999999999999999999
Q ss_pred HHHHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 84 IHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 84 ~~k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|+++|+++||||++++.+++.+++++++++++|++.++.+.+
T Consensus 123 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~ 164 (651)
T PLN02736 123 CSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTL 164 (651)
T ss_pred HHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHH
Confidence 999999999999999999999999999999999987665443
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=146.62 Aligned_cols=217 Identities=10% Similarity=0.025 Sum_probs=144.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++||||||+|++|.+|+++|+++ +.+|+++.|..... ....+.+.. ...++.++.+|++.
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~-g~~V~~~~r~~~~~---~~~~~~l~~---------~~~~~~~~~~Dl~~----- 66 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAAD-GAEVIVVDICGDDA---AATAELVEA---------AGGKARARQVDVRD----- 66 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHH---HHHHHHHHh---------cCCeEEEEECCCCC-----
Confidence 3568999999999999999999976 46899999864321 112111111 12357888999874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCc----cc---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNL----IL---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~----~~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
.+....+. ..+|+|||+|+.... .. .++.....|+.|+.++++.+. ..+.++|+++||..
T Consensus 67 --~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~ 144 (251)
T PRK12826 67 --RAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVA 144 (251)
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechH
Confidence 23444433 368999999988654 11 234567899999999998763 34457899999976
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.++.. ......|+.||...|.++.... ..|++++++|||.++|+........ .+
T Consensus 145 ~~~~~----------------~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~-----~~- 202 (251)
T PRK12826 145 GPRVG----------------YPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDA-----QW- 202 (251)
T ss_pred hhccC----------------CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCch-----HH-
Confidence 54110 0123469999999999987643 3599999999999998753221110 10
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
...... ..|- ..++.+++++++++.+..... ..+++||+..
T Consensus 203 ~~~~~~-~~~~----~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~ 245 (251)
T PRK12826 203 AEAIAA-AIPL----GRLGEPEDIAAAVLFLASDEARYITGQTLPVDG 245 (251)
T ss_pred HHHHHh-cCCC----CCCcCHHHHHHHHHHHhCccccCcCCcEEEECC
Confidence 111111 1221 147889999999998875432 2578899875
|
|
| >KOG2865|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=142.58 Aligned_cols=225 Identities=19% Similarity=0.202 Sum_probs=165.7
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCC---C
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLE---M 394 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~---~ 394 (958)
.+-.+=|-|||||||.+++.+|-+. +.+|+..-|..... ..++ =+-|||.+- .
T Consensus 60 sGiVaTVFGAtGFlGryvvnklak~-GSQviiPyR~d~~~--~r~l---------------------kvmGdLGQvl~~~ 115 (391)
T KOG2865|consen 60 SGIVATVFGATGFLGRYVVNKLAKM-GSQVIIPYRGDEYD--PRHL---------------------KVMGDLGQVLFMK 115 (391)
T ss_pred cceEEEEecccccccHHHHHHHhhc-CCeEEEeccCCccc--hhhe---------------------eecccccceeeec
Confidence 3445567799999999999998754 56788777765432 1111 134555542 3
Q ss_pred CCCCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccc
Q psy4557 395 LGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTV 474 (958)
Q Consensus 395 lGL~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~ 474 (958)
+.+.|++......+.-.+||++-+.- +-..--+++.+|+.+.+.|.+.|++.++.+|+++|....- +
T Consensus 116 fd~~DedSIr~vvk~sNVVINLIGrd-~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lgan------v------ 182 (391)
T KOG2865|consen 116 FDLRDEDSIRAVVKHSNVVINLIGRD-YETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGAN------V------ 182 (391)
T ss_pred cCCCCHHHHHHHHHhCcEEEEeeccc-cccCCcccccccchHHHHHHHHHHhhChhheeehhhcccc------c------
Confidence 45667778888888889999998752 2111114678999999999999999999999999987520 0
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCC--C--c
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDID--W--Y 550 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~--~--~ 550 (958)
...+-|-.||.++|..++.|-- .++|+||..|||.-+ .|+......-.++|.+|-.. + .
T Consensus 183 -------~s~Sr~LrsK~~gE~aVrdafP---eAtIirPa~iyG~eD-------rfln~ya~~~rk~~~~pL~~~GekT~ 245 (391)
T KOG2865|consen 183 -------KSPSRMLRSKAAGEEAVRDAFP---EATIIRPADIYGTED-------RFLNYYASFWRKFGFLPLIGKGEKTV 245 (391)
T ss_pred -------cChHHHHHhhhhhHHHHHhhCC---cceeechhhhcccch-------hHHHHHHHHHHhcCceeeecCCccee
Confidence 2234589999999999988742 378999999999642 23333333334478888543 2 2
Q ss_pred CCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 551 LEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 551 ~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
-.-++|-+||.+|+.....+++.|++|..+.|+...+.||++++-+
T Consensus 246 K~PVyV~DVaa~IvnAvkDp~s~Gktye~vGP~~yql~eLvd~my~ 291 (391)
T KOG2865|consen 246 KQPVYVVDVAAAIVNAVKDPDSMGKTYEFVGPDRYQLSELVDIMYD 291 (391)
T ss_pred eccEEEehHHHHHHHhccCccccCceeeecCCchhhHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999998864
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-14 Score=174.06 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=99.7
Q ss_pred cHHHHHHHHHHhCCCCeEEEeC-----CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHC
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~-----~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G 88 (958)
..+++|.+++..+|+++|+++. .++++||+||.++++++|++|++.|+++||||+|+++|++++++++|||+++|
T Consensus 53 ~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~G 132 (628)
T TIGR02316 53 LCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIG 132 (628)
T ss_pred HHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence 3467888888889999999862 23689999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 89 ~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
++++|+++.++.+++.+++++++|++||+++..
T Consensus 133 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~ 165 (628)
T TIGR02316 133 AIHSVVFGGFASHSLALRIDDATPKLIVSADAG 165 (628)
T ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEECCcc
Confidence 999999999999999999999999999997653
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-13 Score=151.70 Aligned_cols=205 Identities=18% Similarity=0.171 Sum_probs=145.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHH-HHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENL-KTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~-~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++|+++||||+|.||..++++|+++|++|++++|+.+..... ...+.....++.++.+|+++.+++.++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------- 80 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID------- 80 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh-------
Confidence 4688999999999999999999999999999999987643321 22232222357788899999988776664
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC----C-------
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF----A------- 861 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~----~------- 861 (958)
.+|++||+||... +.+...+++|+.|+..+++++.. . +-++||++||.++..+. +
T Consensus 81 ~~d~Vih~A~~~~---------~~~~~~~~~nv~gt~~ll~aa~~----~-~v~r~V~~SS~~avyg~~~~~~~~~~~E~ 146 (342)
T PLN02214 81 GCDGVFHTASPVT---------DDPEQMVEPAVNGAKFVINAAAE----A-KVKRVVITSSIGAVYMDPNRDPEAVVDES 146 (342)
T ss_pred cCCEEEEecCCCC---------CCHHHHHHHHHHHHHHHHHHHHh----c-CCCEEEEeccceeeeccCCCCCCcccCcc
Confidence 4899999999641 23568899999999999988753 1 23599999997543211 1
Q ss_pred ----------CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC---hhhhhhhc-c-----ccCC
Q psy4557 862 ----------GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD---RDVVDKYD-I-----SKAV 922 (958)
Q Consensus 862 ----------~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~---~~~~~~~~-~-----~~~~ 922 (958)
....|+.||.+.+.+.+.++.+. |+++..+.|+.|.-|....... ........ . ....
T Consensus 147 ~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~---g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 223 (342)
T PLN02214 147 CWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEK---GVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQ 223 (342)
T ss_pred cCCChhhccccccHHHHHHHHHHHHHHHHHHHc---CCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcccCCCCCc
Confidence 12469999999999988876654 8999999999997764321100 00000000 0 0112
Q ss_pred CCCCHHHHHHHHHHHhcCCC
Q psy4557 923 PVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 923 ~~~~p~~ia~~i~~~l~~~~ 942 (958)
.++..+|+|++++.++..+.
T Consensus 224 ~~i~V~Dva~a~~~al~~~~ 243 (342)
T PLN02214 224 AYVDVRDVALAHVLVYEAPS 243 (342)
T ss_pred CeeEHHHHHHHHHHHHhCcc
Confidence 35689999999999887653
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-14 Score=175.89 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=104.9
Q ss_pred ccccHHHHHHHHHHhCCCCeEEEeC--------------------------CCceeeHHHHHHHHHHHHHHHHHCCCCCC
Q psy4557 11 AEGALHYMFRNQAKRTPDKIAVVDH--------------------------DGRSITFKQLDEWTDIVGTYLINQGCIVG 64 (958)
Q Consensus 11 ~~~~l~~~~~~~a~~~pd~~Al~~~--------------------------~~~~lTY~eL~~~~~~lA~~L~~~Gv~~g 64 (958)
...++.++|.++++++||++|+.+. +.+.+||+||.++++++|++|++.|+++|
T Consensus 67 ~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~g 146 (700)
T PTZ00216 67 YGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKG 146 (700)
T ss_pred CCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3467999999999999999999752 24689999999999999999999999999
Q ss_pred CEEEEEcCCCHHHHHHHHHHHHHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 65 STVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 65 d~Vai~~~n~~~~v~~~la~~k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
|+|+|+++|+++|++++|||+++|+++||+++.+++++++|++++++++++|++....+
T Consensus 147 d~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~ 205 (700)
T PTZ00216 147 SNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVP 205 (700)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876543
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-14 Score=174.39 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=97.5
Q ss_pred cHHHHHHHHHHh--CCCCeEEEeC---C--CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q psy4557 14 ALHYMFRNQAKR--TPDKIAVVDH---D--GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (958)
Q Consensus 14 ~l~~~~~~~a~~--~pd~~Al~~~---~--~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k 86 (958)
+..+++++++.. +|+++|+++. . .+++||+||.++++++|++|++.|+++||||+++|+|++++++++|||++
T Consensus 60 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~ 139 (647)
T PTZ00237 60 TCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCAR 139 (647)
T ss_pred HHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 456777777754 7999999862 1 35799999999999999999999999999999999999999999999999
Q ss_pred HCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q psy4557 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (958)
Q Consensus 87 ~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~ 120 (958)
+|++++|+++.++++++.++|++++|++||+++.
T Consensus 140 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~ 173 (647)
T PTZ00237 140 IGATHCVLFDGYSVKSLIDRIETITPKLIITTNY 173 (647)
T ss_pred hCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEccc
Confidence 9999999999999999999999999999999764
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-13 Score=143.28 Aligned_cols=217 Identities=15% Similarity=0.141 Sum_probs=138.4
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEe-ccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCP-VRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~cl-vR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++|+||||||+||+++++.|++++ .+|..+ .|... ..+.+.+.+. ....++.++.+|++.+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G-~~v~i~~~r~~~---~~~~~~~~~~---------~~~~~~~~~~~D~~d~---- 68 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDG-ALVAIHYGRNKQ---AADETIREIE---------SNGGKAFLIEADLNSI---- 68 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHH---HHHHHHHHHH---------hcCCcEEEEEcCcCCH----
Confidence 4689999999999999999999874 566554 45321 1111111111 1124678899998753
Q ss_pred CcHHHHHHHh-------------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhccC--CCccEEEE
Q psy4557 398 KNQDEYVSLS-------------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSFLN--KIKSFHYV 455 (958)
Q Consensus 398 ~~~~~~~~l~-------------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~v 455 (958)
+....+. .++|+|||+|+..... .+ +....++|+.|+.++++.+... +..+|+++
T Consensus 69 ---~~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~ 145 (254)
T PRK12746 69 ---DGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINI 145 (254)
T ss_pred ---HHHHHHHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence 3333332 2589999999975321 12 2345678999999999887642 33589999
Q ss_pred ecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHH
Q psy4557 456 STDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLN 531 (958)
Q Consensus 456 ST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~ 531 (958)
||.+++... .....|+.||...|.+++... ..|+++++++||.+.++.........+ +
T Consensus 146 sS~~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~-~ 207 (254)
T PRK12746 146 SSAEVRLGF-----------------TGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPE-I 207 (254)
T ss_pred CCHHhcCCC-----------------CCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChh-H
Confidence 998775421 123479999999999876532 358999999999998765322111111 1
Q ss_pred HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCC--CCceEEecCC
Q psy4557 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNN--ANKIYNFINT 582 (958)
Q Consensus 532 ~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~--~~~v~h~~n~ 582 (958)
..+.. +..+ .-.++.++++++++..+...... .+.+|++.+.
T Consensus 208 ~~~~~-----~~~~----~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 208 RNFAT-----NSSV----FGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred HHHHH-----hcCC----cCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 11111 1111 12457899999999888765322 4678888753
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=149.94 Aligned_cols=226 Identities=14% Similarity=0.101 Sum_probs=142.3
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.+++|||||||++|+++++.|+++ +.+|+++.|..+.. +.+.+..... ....++.++.+|++++
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~---~~~~~~~~~~-------~~~~~~~~~~~D~~d~----- 66 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKK-GYLVIATMRNPEKQ---ENLLSQATQL-------NLQQNIKVQQLDVTDQ----- 66 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhC-CCEEEEEeCCHHHH---HHHHHHHHhc-------CCCCceeEEecCCCCH-----
Confidence 357999999999999999999976 57899988864322 2222211111 1124788899998853
Q ss_pred cHHHHH---HH---hcccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEeccccc
Q psy4557 399 NQDEYV---SL---SYEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDSIY 461 (958)
Q Consensus 399 ~~~~~~---~l---~~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~v~ 461 (958)
+..+ .+ ...+|+|||||+..... ..+.....+|+.|+.++++.+ +..+..+|+++||.+.+
T Consensus 67 --~~~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~ 144 (280)
T PRK06914 67 --NSIHNFQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGR 144 (280)
T ss_pred --HHHHHHHHHHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccc
Confidence 3322 22 24689999999865421 123345678999998888765 44555789999986432
Q ss_pred -CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCc----Ch---hH
Q psy4557 462 -PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNW----NL---VD 529 (958)
Q Consensus 462 -~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~----n~---~d 529 (958)
+. .....|+.||...|.+++.. ..+|++++++|||.+.++...... +. ..
T Consensus 145 ~~~------------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~ 206 (280)
T PRK06914 145 VGF------------------PGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTS 206 (280)
T ss_pred CCC------------------CCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhcccccccccccccc
Confidence 21 12357999999999988753 346999999999999876321100 00 00
Q ss_pred HHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCC
Q psy4557 530 LNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPI 585 (958)
Q Consensus 530 ~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~ 585 (958)
.....+.... +..+. ....+..++++|++++.+..+... ...|++.+...+
T Consensus 207 ~~~~~~~~~~--~~~~~--~~~~~~~~~dva~~~~~~~~~~~~-~~~~~~~~~~~~ 257 (280)
T PRK06914 207 PYKEYMKKIQ--KHINS--GSDTFGNPIDVANLIVEIAESKRP-KLRYPIGKGVKL 257 (280)
T ss_pred chHHHHHHHH--HHHhh--hhhccCCHHHHHHHHHHHHcCCCC-CcccccCCchHH
Confidence 0111111111 11111 123467899999999999876644 356888765433
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-14 Score=169.11 Aligned_cols=112 Identities=22% Similarity=0.300 Sum_probs=105.0
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.++|.++++++|+++|+++. ++++||+||+++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++|
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~-~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 121 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDE-LGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL 121 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeC-CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence 35889999999999999999874 56899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|+|+.++.+++.+++++++++++|++..+.+.+
T Consensus 122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 154 (537)
T PRK13382 122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATV 154 (537)
T ss_pred ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHH
Confidence 999999999999999999999999987765443
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-14 Score=173.22 Aligned_cols=108 Identities=21% Similarity=0.267 Sum_probs=98.8
Q ss_pred HHHHHHHHHH-hCCCCeEEEeCC-----CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHC
Q psy4557 15 LHYMFRNQAK-RTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (958)
Q Consensus 15 l~~~~~~~a~-~~pd~~Al~~~~-----~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G 88 (958)
...+++++++ .+|+++|+++.. ++.+||+||.++++++|++|++.|+++||||+++++|++++++++|||+++|
T Consensus 90 ~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~G 169 (666)
T PLN02654 90 CYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIG 169 (666)
T ss_pred HHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 3567877775 489999998621 3589999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcccch
Q psy4557 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 89 ~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
++++|+++.++.+++.+++++++|+++|+++.+.
T Consensus 170 av~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~ 203 (666)
T PLN02654 170 AVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVK 203 (666)
T ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEcCccc
Confidence 9999999999999999999999999999987654
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-13 Score=144.49 Aligned_cols=226 Identities=13% Similarity=0.034 Sum_probs=144.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++++||||||||||.+++++|+++ +.+|+++.|.... ..+.+.+.+.. ...++.++.+|++.+
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~-G~~V~~~~r~~~~--~~~~~~~~l~~---------~~~~~~~~~~D~~~~---- 68 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGA-GAHVVVNYRQKAP--RANKVVAEIEA---------AGGRASAVGADLTDE---- 68 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHC-CCEEEEEeCCchH--hHHHHHHHHHh---------cCCceEEEEcCCCCH----
Confidence 3568999999999999999999876 4678888885432 12223222221 124677889998753
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCc-ccChHHHHhhhHHHHHHHHHhhccC--CCccEEEEecccccCCCCCC
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNL-ILPYNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDSIYPSTSEN 467 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~-~~~~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~v~~~~~~~ 467 (958)
+....+. ..+|+|||+|+.... ........++|+.|+.++++.+... +..+++|+||........
T Consensus 69 ---~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~-- 143 (248)
T PRK07806 69 ---ESVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT-- 143 (248)
T ss_pred ---HHHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc--
Confidence 3333332 368999999985321 2233455678999999999988643 224899999854321000
Q ss_pred CcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC
Q psy4557 468 FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY 543 (958)
Q Consensus 468 ~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~ 543 (958)
.+. . ....+|+.||...|.+++..+ ..|+++++++||.+-++......+. ..........
T Consensus 144 -~~~-------~--~~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~------~~~~~~~~~~ 207 (248)
T PRK07806 144 -VKT-------M--PEYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNR------LNPGAIEARR 207 (248)
T ss_pred -ccC-------C--ccccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhhhcc------CCHHHHHHHH
Confidence 000 0 113579999999999987642 3589999999987766532211100 0000000001
Q ss_pred cCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCC
Q psy4557 544 APDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNP 584 (958)
Q Consensus 544 ~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~ 584 (958)
.| ...++.++++|++++.++.+....+++|++.+++.
T Consensus 208 ~~----~~~~~~~~dva~~~~~l~~~~~~~g~~~~i~~~~~ 244 (248)
T PRK07806 208 EA----AGKLYTVSEFAAEVARAVTAPVPSGHIEYVGGADY 244 (248)
T ss_pred hh----hcccCCHHHHHHHHHHHhhccccCccEEEecCccc
Confidence 12 13578999999999999886666789999998653
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=141.58 Aligned_cols=259 Identities=17% Similarity=0.141 Sum_probs=176.1
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++.||||-||+-|+||.+-||+. ++.||.++|+.+... ..|+ ++..+...-..++.++.|||++
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLek-GY~VhGi~Rrss~~n-~~ri-------~L~~~~~~~~~~l~l~~gDLtD------ 66 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEK-GYEVHGIKRRSSSFN-TPRI-------HLYEDPHLNDPRLHLHYGDLTD------ 66 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhc-CcEEEEEeeccccCC-cccc-------eeccccccCCceeEEEeccccc------
Confidence 357899999999999999877765 689999999854321 1222 1111111123468999999874
Q ss_pred cHHHHHHHh--cccCEEEEcccccCcccChHH---HHhhhHHHHHHHHHhhccCC--CccEEEEecccccCCCCCCCccc
Q psy4557 399 NQDEYVSLS--YEIDMIIHAAAFVNLILPYNA---LYKSNVLATKNLIEFSFLNK--IKSFHYVSTDSIYPSTSENFQED 471 (958)
Q Consensus 399 ~~~~~~~l~--~~vd~IiH~AA~v~~~~~~~~---~~~~NV~gt~~ll~~a~~~~--~k~~~~vST~~v~~~~~~~~~e~ 471 (958)
......+. -++|-|||+||+.+...++++ .-.++-.||.+||+..+.-+ ..+|...||+..||...+...
T Consensus 67 -~~~l~r~l~~v~PdEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq-- 143 (345)
T COG1089 67 -SSNLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQ-- 143 (345)
T ss_pred -hHHHHHHHHhcCchhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCcc--
Confidence 23344443 367999999998665555443 23568889999999887543 358999999999996533211
Q ss_pred ccccCcCCCCCCCCChhHHHHHHHHHHHHHhh-CCCCEEEEecCceeccCCCCCcCh---hHHHHHHHHHHHHhCCcCCC
Q psy4557 472 YTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ-MGLPVSIVRCGNIGGSLEFKNWNL---VDLNLYILKAITRLGYAPDI 547 (958)
Q Consensus 472 ~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~-~glp~~I~R~g~i~G~~~~g~~n~---~d~~~~l~~~~~~~g~~P~~ 547 (958)
.+..|..|.++|+.+|.-|-.+..+.++ +|+-++-=+++|.=+|.+.-.+-+ ...+.++-.+....=.+-++
T Consensus 144 ----~E~TPFyPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNl 219 (345)
T COG1089 144 ----KETTPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNL 219 (345)
T ss_pred ----ccCCCCCCCCHHHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccc
Confidence 1234457889999999999998887765 599888888888777765333322 22222222111111122356
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHH-HHcCCCc
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVL-NTYGYNI 601 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l-~~~g~~~ 601 (958)
+...||=+.-+-++++-.+..+.. ...|.+.....-+++++++.- +..|+.+
T Consensus 220 dAkRDWG~A~DYVe~mwlmLQq~~--PddyViATg~t~sVrefv~~Af~~~g~~l 272 (345)
T COG1089 220 DAKRDWGHAKDYVEAMWLMLQQEE--PDDYVIATGETHSVREFVELAFEMVGIDL 272 (345)
T ss_pred cccccccchHHHHHHHHHHHccCC--CCceEEecCceeeHHHHHHHHHHHcCceE
Confidence 678999999888899988887654 457999998999999998854 4557654
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.2e-13 Score=150.80 Aligned_cols=211 Identities=14% Similarity=0.154 Sum_probs=142.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEE-EecChh--hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVA-VARRID--RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~-~~r~~~--~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
|.++||||+|+||.+++++|.++|+.|++ +.|... ....+.. +. ...++.++.+|++|.++++++++. .+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 74 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAP-VA-QSERFAFEKVDICDRAELARVFTE-----HQ 74 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhh-cc-cCCceEEEECCCcChHHHHHHHhh-----cC
Confidence 57999999999999999999999987654 444322 1111211 11 123566788999999998887764 26
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHH---hC-CCCcEEEEecCccCcC-----------
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSML---HS-RRPGHILNISSNAGVR----------- 858 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~---~~-~~~g~IV~isS~~g~~----------- 858 (958)
+|+||||||.... +.+.+.++..+++|+.|++.+++++.+.|. .. .+..++|++||.+..-
T Consensus 75 ~D~Vih~A~~~~~----~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E 150 (355)
T PRK10217 75 PDCVMHLAAESHV----DRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTE 150 (355)
T ss_pred CCEEEECCcccCc----chhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCC
Confidence 9999999997532 234466789999999999999999987542 11 1224899999954211
Q ss_pred --CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhh------hcc----ccCCCCC
Q psy4557 859 --PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDK------YDI----SKAVPVL 925 (958)
Q Consensus 859 --~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~------~~~----~~~~~~~ 925 (958)
+....+.|+.||.+.+.+++.+++++ |+++..+.|+.+.-|-..... -...+.. ... .....++
T Consensus 151 ~~~~~p~s~Y~~sK~~~e~~~~~~~~~~---~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i 227 (355)
T PRK10217 151 TTPYAPSSPYSASKASSDHLVRAWLRTY---GLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWL 227 (355)
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEeCCCCeeeCcC
Confidence 22345679999999999999988775 677777888777654321100 0000000 000 0112367
Q ss_pred CHHHHHHHHHHHhcCC
Q psy4557 926 TTKEISQSIIFALLQP 941 (958)
Q Consensus 926 ~p~~ia~~i~~~l~~~ 941 (958)
..+|++.+++.++..+
T Consensus 228 ~v~D~a~a~~~~~~~~ 243 (355)
T PRK10217 228 YVEDHARALYCVATTG 243 (355)
T ss_pred cHHHHHHHHHHHHhcC
Confidence 8999999999877654
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.2e-14 Score=173.73 Aligned_cols=106 Identities=22% Similarity=0.291 Sum_probs=96.3
Q ss_pred HHHHHHHHhCCCCeEEEeCCC-------ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCC
Q psy4557 17 YMFRNQAKRTPDKIAVVDHDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (958)
Q Consensus 17 ~~~~~~a~~~pd~~Al~~~~~-------~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~ 89 (958)
..|.+.+.++|+++|+++.++ +++||+||.++++++|++|++.|+++||||+++++|++++++++|||+++|+
T Consensus 179 ~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Ga 258 (728)
T PLN03052 179 CCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGC 258 (728)
T ss_pred HHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCC
Confidence 456666567899999986332 3799999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHhhcCCeEEEEcccch
Q psy4557 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 90 v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
+++|++|.++++++.+++++++|+++|+++.+.
T Consensus 259 v~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~ 291 (728)
T PLN03052 259 VVVSIADSFAPSEIATRLKISKAKAIFTQDVIV 291 (728)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCceEEEEcCccc
Confidence 999999999999999999999999999987543
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=143.84 Aligned_cols=232 Identities=14% Similarity=0.108 Sum_probs=149.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||+|+||+++++.|++++ .+|+.+.|.... .+.+.+.+.... ...++.++.+|++.+
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G-~~V~~~~r~~~~---~~~~~~~l~~~~-------~~~~~~~~~~Dl~~~---- 70 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAG-AAVMIVGRNPDK---LAAAAEEIEALK-------GAGAVRYEPADVTDE---- 70 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEeCCHHH---HHHHHHHHHhcc-------CCCceEEEEcCCCCH----
Confidence 45789999999999999999998764 588888775321 112222111110 024788889998742
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCccc-----C---hHHHHhhhHHHHHHHHHhhcc----CCCccEEEEecc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLIL-----P---YNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~~-----~---~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~ 458 (958)
+....+.+ .+|+|||+|+...... + +.....+|+.|+.++++.+.. .+..+|+++||.
T Consensus 71 ---~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~ 147 (276)
T PRK05875 71 ---DQVARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSI 147 (276)
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEech
Confidence 33433332 6899999998643211 1 334567899999999876543 223589999997
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.+... ...+.|+.||+..|.+++... ..|++++++|||.+.++...........
T Consensus 148 ~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~---- 206 (276)
T PRK05875 148 AASNTH-----------------RWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPEL---- 206 (276)
T ss_pred hhcCCC-----------------CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHH----
Confidence 764311 123579999999999997643 3479999999999876543221111111
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCC--CCceEEecCCCCC----CHHHHHHHH
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNN--ANKIYNFINTNPI----HIKTLVSVL 594 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~--~~~v~h~~n~~~~----~~~~l~~~l 594 (958)
..... ...| ...+..+++++++++.++..+.. .+.+|++.+...+ +..++++.+
T Consensus 207 ~~~~~--~~~~----~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~ 266 (276)
T PRK05875 207 SADYR--ACTP----LPRVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPV 266 (276)
T ss_pred HHHHH--cCCC----CCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHH
Confidence 11111 1112 12356689999999999865433 3789999876554 666666554
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.3e-14 Score=172.37 Aligned_cols=114 Identities=17% Similarity=0.251 Sum_probs=104.4
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeC-CC---ceeeHHHHHHHHHHHHHHHHH---CCCCCC-----------CEEEEEcCC
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDH-DG---RSITFKQLDEWTDIVGTYLIN---QGCIVG-----------STVGVLMER 73 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~-~~---~~lTY~eL~~~~~~lA~~L~~---~Gv~~g-----------d~Vai~~~n 73 (958)
..++.++|.+.++++|+++|+++. ++ +.+||+||.++++++|++|.+ +|+++| |||+|+++|
T Consensus 60 ~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N 139 (746)
T PTZ00342 60 YKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSN 139 (746)
T ss_pred cchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCC
Confidence 468999999999999999999852 12 579999999999999999997 499999 999999999
Q ss_pred CHHHHHHHHHHHHHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 74 ~~~~v~~~la~~k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+++|++++|||+++|++.||++++++++++.|+|+++++++||++.++.+.+
T Consensus 140 ~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l 191 (746)
T PTZ00342 140 SINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGL 191 (746)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHH
Confidence 9999999999999999999999999999999999999999999987665544
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=7e-14 Score=172.98 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=103.8
Q ss_pred ccccHHHHHHHHHHhCCCCeEEEe-----------CCCc-----------eeeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q psy4557 11 AEGALHYMFRNQAKRTPDKIAVVD-----------HDGR-----------SITFKQLDEWTDIVGTYLINQGCIVGSTVG 68 (958)
Q Consensus 11 ~~~~l~~~~~~~a~~~pd~~Al~~-----------~~~~-----------~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Va 68 (958)
...++.++|++.++++||++|+.+ .+++ .+||+||.++++++|++|.+.|+++||+|+
T Consensus 56 ~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Va 135 (696)
T PLN02387 56 GATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVA 135 (696)
T ss_pred CCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 346789999999999999999932 1222 289999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHHHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 69 VLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 69 i~~~n~~~~v~~~la~~k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|+++|++||++++|||+++|+++||||+.++++++.|+|++++++++|++.++.+.+
T Consensus 136 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l 192 (696)
T PLN02387 136 IFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKL 192 (696)
T ss_pred EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987655443
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-14 Score=170.91 Aligned_cols=109 Identities=22% Similarity=0.256 Sum_probs=100.0
Q ss_pred cHHHHHHHHHHhCCCCeEEEeCC-----CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHC
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~~-----~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G 88 (958)
...+.++++++++|+++|+++.+ .+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 58 ~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 137 (625)
T TIGR02188 58 VSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIG 137 (625)
T ss_pred HHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 35677888888899999998532 2479999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcccch
Q psy4557 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 89 ~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
++++|+++.++.+++.+++++++++++|+++.+.
T Consensus 138 av~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~ 171 (625)
T TIGR02188 138 AIHSVVFGGFSAEALADRINDAGAKLVITADEGL 171 (625)
T ss_pred CEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccc
Confidence 9999999999999999999999999999987543
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.3e-13 Score=147.72 Aligned_cols=209 Identities=21% Similarity=0.220 Sum_probs=144.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhh--cCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ--NAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~--~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+||+++||||+|.||..++++|+++|++|+++.|+.+.......... ....++.++.+|+++.+++.++++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 75 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD------- 75 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc-------
Confidence 47899999999999999999999999999999998665433322111 112357788999999888766654
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc--CCC----------
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV--RPF---------- 860 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~--~~~---------- 860 (958)
.+|++||+||..... ... ....++++|+.|+..+++++...+ +.++||++||.++. -+.
T Consensus 76 ~~d~Vih~A~~~~~~---~~~--~~~~~~~~nv~gt~~ll~a~~~~~----~~~~~v~~SS~~~~~y~~~~~~~~~~~~E 146 (322)
T PLN02662 76 GCEGVFHTASPFYHD---VTD--PQAELIDPAVKGTLNVLRSCAKVP----SVKRVVVTSSMAAVAYNGKPLTPDVVVDE 146 (322)
T ss_pred CCCEEEEeCCcccCC---CCC--hHHHHHHHHHHHHHHHHHHHHhCC----CCCEEEEccCHHHhcCCCcCCCCCCcCCc
Confidence 579999999975321 111 225789999999999998875421 23599999997531 110
Q ss_pred -----CC-----ChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhhhhhh-c---c--ccCC
Q psy4557 861 -----AG-----LAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDVVDKY-D---I--SKAV 922 (958)
Q Consensus 861 -----~~-----~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~~-~---~--~~~~ 922 (958)
|. ...|+.||.+.+.+++.+..+ .|++++.+.|+.+..+....... ....... . . ....
T Consensus 147 ~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (322)
T PLN02662 147 TWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKE---NGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQTFPNASY 223 (322)
T ss_pred ccCCChhHhhcccchHHHHHHHHHHHHHHHHHH---cCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCccCCCCCc
Confidence 10 146999999988888776554 48999999999999886432111 0111110 0 0 0112
Q ss_pred CCCCHHHHHHHHHHHhcCCC
Q psy4557 923 PVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 923 ~~~~p~~ia~~i~~~l~~~~ 942 (958)
.++.++|+|++++.++..+.
T Consensus 224 ~~i~v~Dva~a~~~~~~~~~ 243 (322)
T PLN02662 224 RWVDVRDVANAHIQAFEIPS 243 (322)
T ss_pred CeEEHHHHHHHHHHHhcCcC
Confidence 35788999999999887653
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=140.54 Aligned_cols=217 Identities=13% Similarity=0.089 Sum_probs=141.7
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+.||||||+||||++|++.|+++ +.+|+++.|..... .+...+.+.. ...++.++.+|++.+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~-g~~vi~~~r~~~~~--~~~~~~~~~~---------~~~~~~~~~~D~~~~------ 64 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAA-GFDLAINDRPDDEE--LAATQQELRA---------LGVEVIFFPADVADL------ 64 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecCchhH--HHHHHHHHHh---------cCCceEEEEecCCCH------
Confidence 57999999999999999999976 46888888764321 1112221111 124788899998853
Q ss_pred HHHHHHHh-------cccCEEEEcccccCcc---------cChHHHHhhhHHHHHHHHHhhccC-----C-----CccEE
Q psy4557 400 QDEYVSLS-------YEIDMIIHAAAFVNLI---------LPYNALYKSNVLATKNLIEFSFLN-----K-----IKSFH 453 (958)
Q Consensus 400 ~~~~~~l~-------~~vd~IiH~AA~v~~~---------~~~~~~~~~NV~gt~~ll~~a~~~-----~-----~k~~~ 453 (958)
++...+. ..+|+|||||+..... ..++....+|+.|+.++++.+... + ..+|+
T Consensus 65 -~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv 143 (256)
T PRK12745 65 -SAHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIV 143 (256)
T ss_pred -HHHHHHHHHHHHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEE
Confidence 3333332 4689999999874321 234456789999999998776321 1 35699
Q ss_pred EEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhH
Q psy4557 454 YVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVD 529 (958)
Q Consensus 454 ~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d 529 (958)
|+||...+... .....|+.||...|.+++... .+|++++++|||.+.++...+. .+
T Consensus 144 ~~sS~~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~---~~ 203 (256)
T PRK12745 144 FVSSVNAIMVS-----------------PNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPV---TA 203 (256)
T ss_pred EECChhhccCC-----------------CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCcccccc---ch
Confidence 99997653211 123479999999999887643 3699999999999987653221 11
Q ss_pred HHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC
Q psy4557 530 LNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN 583 (958)
Q Consensus 530 ~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~ 583 (958)
.....+ ..+..|. ..|.+++++++++..+..... ..+.+|++.+..
T Consensus 204 ~~~~~~----~~~~~~~----~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg~ 251 (256)
T PRK12745 204 KYDALI----AKGLVPM----PRWGEPEDVARAVAALASGDLPYSTGQAIHVDGGL 251 (256)
T ss_pred hHHhhh----hhcCCCc----CCCcCHHHHHHHHHHHhCCcccccCCCEEEECCCe
Confidence 111111 1122332 246688899999988875432 347889987654
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.4e-14 Score=167.59 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=101.9
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
..++.+.|.+.++++|+++|+.+...+++||+||.++++++|++|.. .+||||+|+++|++++++++|||+++|+++
T Consensus 18 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v~ 94 (539)
T PRK06334 18 GKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGKIP 94 (539)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCCee
Confidence 35789999999999999999986544689999999999999999987 399999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
||||++++.+|+.++|++++++++|++.++.+.+
T Consensus 95 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 128 (539)
T PRK06334 95 VMINWSQGLREVTACANLVGVTHVLTSKQLMQHL 128 (539)
T ss_pred EecCcccchHHHHHHHHHcCCCEEEehHHHHHHH
Confidence 9999999999999999999999999987765544
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.3e-13 Score=148.86 Aligned_cols=209 Identities=18% Similarity=0.212 Sum_probs=146.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHH--HhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKT--SLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~--~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++|+++||||+|.||+.++++|+++|++|+++.|+.+....... .+.. .+++.++.+|+++.+++.++++
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~------ 79 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQE-LGDLKIFGADLTDEESFEAPIA------ 79 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCC-CCceEEEEcCCCChHHHHHHHh------
Confidence 468899999999999999999999999999988888655443321 1211 1357788999999988776553
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC------------
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP------------ 859 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~------------ 859 (958)
++|++||+||... .. ..+.+...+++|+.|+..+++++.+. .+.++||++||.+..-.
T Consensus 80 -~~d~vih~A~~~~---~~--~~~~~~~~~~~nv~g~~~ll~a~~~~----~~~~~~v~~SS~~~~g~~~~~~~~~~~~E 149 (338)
T PLN00198 80 -GCDLVFHVATPVN---FA--SEDPENDMIKPAIQGVHNVLKACAKA----KSVKRVILTSSAAAVSINKLSGTGLVMNE 149 (338)
T ss_pred -cCCEEEEeCCCCc---cC--CCChHHHHHHHHHHHHHHHHHHHHhc----CCccEEEEeecceeeeccCCCCCCceecc
Confidence 5799999998532 11 12335677899999999999987542 22469999999764321
Q ss_pred ------------CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh---hhh---h--hhcc-
Q psy4557 860 ------------FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR---DVV---D--KYDI- 918 (958)
Q Consensus 860 ------------~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~---~~~---~--~~~~- 918 (958)
.+....|+.||.+.+.+++.++.+ +|+++..+.|+.|..|-....... ... . .+..
T Consensus 150 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (338)
T PLN00198 150 KNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEE---NNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLIN 226 (338)
T ss_pred ccCCchhhhhhcCCccchhHHHHHHHHHHHHHHHHh---cCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccc
Confidence 112456999999999998887665 489999999999987743211000 000 0 0000
Q ss_pred --c------cCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 919 --S------KAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 919 --~------~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
. ....++..+|++++++.++..+.
T Consensus 227 g~~~~~~~~~~~~~i~V~D~a~a~~~~~~~~~ 258 (338)
T PLN00198 227 GLKGMQMLSGSISITHVEDVCRAHIFLAEKES 258 (338)
T ss_pred cccccccccCCcceeEHHHHHHHHHHHhhCcC
Confidence 0 01246789999999999876653
|
|
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.6e-14 Score=155.38 Aligned_cols=116 Identities=25% Similarity=0.358 Sum_probs=109.3
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCC-CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~-~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
..++++.|..+++++|+|+|+++.+ ++++||+|++++++|+|+.|.+.|++.||.||++|+|++|++..|||.+|+|++
T Consensus 76 ~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~ 155 (649)
T KOG1179|consen 76 RRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVI 155 (649)
T ss_pred CCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCce
Confidence 4578999999999999999998743 368999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhhhc
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 127 (958)
..-||+++..+-|.|.+.-|+++++|++.++.+.+.+
T Consensus 156 tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e 192 (649)
T KOG1179|consen 156 TAFINTNLRGEPLLHSITVSGARALVVGPELLNALEE 192 (649)
T ss_pred eeeeccccccchhhhhhhhcCceEEEECHHHHHHHHh
Confidence 9999999999999999999999999999998876654
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=168.35 Aligned_cols=109 Identities=20% Similarity=0.314 Sum_probs=101.3
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCC----CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~----~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~ 87 (958)
..++.++|+++++++|+++|+++.+ .+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 117 (614)
T PRK08180 38 PRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYA 117 (614)
T ss_pred CccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence 3578999999999999999997531 257999999999999999999999999999999999999999999999999
Q ss_pred CCeEecCCCCCC-----HHHHHHHHhhcCCeEEEEccc
Q psy4557 88 GGGYLPLETSYP-----PALLESVLDDAKPSIVITKGE 120 (958)
Q Consensus 88 G~v~vPln~~~~-----~~~l~~il~~~~~~~vi~~~~ 120 (958)
|+++||+||+++ .+|+.+++++++++++|+++.
T Consensus 118 Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~ 155 (614)
T PRK08180 118 GVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDG 155 (614)
T ss_pred CCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCH
Confidence 999999999999 899999999999999999753
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.2e-13 Score=144.96 Aligned_cols=208 Identities=15% Similarity=0.127 Sum_probs=133.3
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||+|+||.+++++|+++ +.+|+++.|.... .+.+.+ ....++..+.+|++.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~~---~~~l~~------------~~~~~~~~~~~D~~d~----- 62 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA-GHRVVGTVRSEAA---RADFEA------------LHPDRALARLLDVTDF----- 62 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC-cCEEEEEeCCHHH---HHHHHh------------hcCCCeeEEEccCCCH-----
Confidence 357999999999999999999876 5789999885321 122211 1124678888998753
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccc
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v 460 (958)
+....+. ..+|+|||+|+..... .+ +...+++|+.|+.++++.+. ..+..+++++||.+.
T Consensus 63 --~~~~~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~ 140 (277)
T PRK06180 63 --DAIDAVVADAEATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGG 140 (277)
T ss_pred --HHHHHHHHHHHHHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccc
Confidence 3333332 3589999999975431 11 34457899999999998742 334468999999765
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcC-----hhHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWN-----LVDLN 531 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n-----~~d~~ 531 (958)
+... .....|+.||...|.+++... ..|++++++|||.+.++.....+. ..++.
T Consensus 141 ~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~ 203 (277)
T PRK06180 141 LITM-----------------PGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYD 203 (277)
T ss_pred cCCC-----------------CCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHH
Confidence 4211 123579999999999887643 249999999999997654321111 11111
Q ss_pred HHHHHHHHH-hCCcCCCCCcCCcccHHHHHHHHHHHhcCcC
Q psy4557 532 LYILKAITR-LGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN 571 (958)
Q Consensus 532 ~~l~~~~~~-~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~ 571 (958)
........ ....+ ...+..++++|++++.+.....
T Consensus 204 -~~~~~~~~~~~~~~----~~~~~~~~dva~~~~~~l~~~~ 239 (277)
T PRK06180 204 -ALFGPIRQAREAKS----GKQPGDPAKAAQAILAAVESDE 239 (277)
T ss_pred -HHHHHHHHHHHhhc----cCCCCCHHHHHHHHHHHHcCCC
Confidence 11111100 00011 1234678999999999876543
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=169.16 Aligned_cols=107 Identities=21% Similarity=0.319 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhCCCCeEEEeC-----CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCC
Q psy4557 15 LHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (958)
Q Consensus 15 l~~~~~~~a~~~pd~~Al~~~-----~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~ 89 (958)
.+++|+++++.+|+++|+++. ..+.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 55 ~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 134 (629)
T PRK10524 55 CHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA 134 (629)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 467888888889999999852 235899999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 90 v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+++|+++.++.+++.+++++++|+++|+++..
T Consensus 135 v~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~ 166 (629)
T PRK10524 135 IHSVVFGGFASHSLAARIDDAKPVLIVSADAG 166 (629)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCcEEEEccCc
Confidence 99999999999999999999999999997643
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-12 Score=138.58 Aligned_cols=217 Identities=14% Similarity=0.125 Sum_probs=141.7
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||+|+||.++++.|+++ +.+|+++.|.... .+++.+.+.. ...++..+.+|++.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~Dl~~~---- 67 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALARE-GASVVVADINAEG---AERVAKQIVA---------DGGTAIAVQVDVSDP---- 67 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHH---HHHHHHHHHh---------cCCcEEEEEcCCCCH----
Confidence 3468999999999999999999986 4789888885322 2233222211 123566788898742
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCc-------c---cChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEe
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNL-------I---LPYNALYKSNVLATKNLIEFSFL----NKIKSFHYVS 456 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~-------~---~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vS 456 (958)
++...+. ..+|+|||+|+.... . ..++....+|+.|+.++++.+.. .+.++|+++|
T Consensus 68 ---~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s 144 (250)
T PRK07774 68 ---DSAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQS 144 (250)
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence 3333332 368999999997431 1 12334567999999999887753 2346899999
Q ss_pred cccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHH
Q psy4557 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNL 532 (958)
Q Consensus 457 T~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~ 532 (958)
|.++++. .+.|+.||+..|.+++... ..|+++++++||.+..+..... ....
T Consensus 145 S~~~~~~--------------------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~-~~~~--- 200 (250)
T PRK07774 145 STAAWLY--------------------SNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTV-TPKE--- 200 (250)
T ss_pred cccccCC--------------------ccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCcccccc-CCHH---
Confidence 9776531 2479999999999987643 2489999999998876543221 1111
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCC
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPI 585 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~ 585 (958)
+.+.... ..|. .-+..++.++++++.++.... ..+++|++.++..+
T Consensus 201 -~~~~~~~--~~~~----~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g~~~ 248 (250)
T PRK07774 201 -FVADMVK--GIPL----SRMGTPEDLVGMCLFLLSDEASWITGQIFNVDGGQII 248 (250)
T ss_pred -HHHHHHh--cCCC----CCCcCHHHHHHHHHHHhChhhhCcCCCEEEECCCeec
Confidence 1121111 1221 113467889999988876532 35788998876543
|
|
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=151.61 Aligned_cols=110 Identities=24% Similarity=0.371 Sum_probs=103.4
Q ss_pred ccHHHHHHHHHHhCCCCeEEEe-CCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~-~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
.|+.+.++-.+++.||+.|++. .++-++||+|+.+.++++|+.|...|+++||||+|+.||+.+|+..+|||.++|.+.
T Consensus 50 ~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~ 129 (596)
T KOG1177|consen 50 ETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVL 129 (596)
T ss_pred ccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEE
Confidence 5789999999999999999875 346679999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccch
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
|++||.|+.+|++|.|+..+++++|+...|.
T Consensus 130 v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k 160 (596)
T KOG1177|consen 130 VNLNPAYQSEELRYVLKKVGCKALFAPPQFK 160 (596)
T ss_pred eccCcccccHHHHHHHhhcCeEEEEccchhh
Confidence 9999999999999999999999999887654
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=167.38 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=101.5
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeC-------CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDH-------DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~-------~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~ 84 (958)
..++.++|.+.++++|+++|+++. .++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus 24 ~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~ 103 (632)
T PRK07529 24 PASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGG 103 (632)
T ss_pred CCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 457899999999999999999752 2468999999999999999999999999999999999999999999999
Q ss_pred HHHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 85 HKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 85 ~k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+++| +++|||+.++++++.+++++++++++|++..+
T Consensus 104 ~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~ 139 (632)
T PRK07529 104 EAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPF 139 (632)
T ss_pred HHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCC
Confidence 9999 67999999999999999999999999998754
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=164.92 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=103.3
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCC-CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~-~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
+.++.+.|.+.|+++|+++|+++.+ ++.+||+||+++++++|++|.+.|+++||+|+|+++|++++++++|||+++|++
T Consensus 13 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v 92 (540)
T PRK05857 13 PSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAI 92 (540)
T ss_pred CcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeE
Confidence 4578899999999999999997533 357999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccch
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
++|||+.++.+++.+++++++++++|+++...
T Consensus 93 ~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~ 124 (540)
T PRK05857 93 AVMADGNLPIAAIERFCQITDPAAALVAPGSK 124 (540)
T ss_pred EEecCccCCHHHHHHHHHhcCCceEEEeccch
Confidence 99999999999999999999999999987653
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=164.45 Aligned_cols=110 Identities=30% Similarity=0.458 Sum_probs=103.9
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
..++.++|++.++.+||++|+++.+++++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus 22 ~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 101 (547)
T PRK06087 22 DASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVS 101 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 45789999999999999999987555789999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+|+|+.++.+++.++++++++++++++..+
T Consensus 102 v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~ 131 (547)
T PRK06087 102 VPLLPSWREAELVWVLNKCQAKMFFAPTLF 131 (547)
T ss_pred eccchhcCHHHHHHHHHhcCCeEEEEeccc
Confidence 999999999999999999999999997643
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=176.06 Aligned_cols=110 Identities=22% Similarity=0.247 Sum_probs=101.8
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
..++.++|+++++++||++|+++ +++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 446 ~~sl~~ll~~~a~~~pd~~Al~~-~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~ 524 (994)
T PRK07868 446 RISLGRIIAEQARDAPKGEFLLF-DGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVA 524 (994)
T ss_pred CccHHHHHHHHHHHCCCCeEEEe-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEE
Confidence 45689999999999999999986 46789999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
||+||. +++.++++++++++||++.++.+.+
T Consensus 525 vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~ 555 (994)
T PRK07868 525 VLMPPD---TDLAAAVRLGGVTEIITDPTNLEAA 555 (994)
T ss_pred EEeCCc---hhHHHHHhccCCeEEEEChHHHHHH
Confidence 999985 7999999999999999987655443
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=165.21 Aligned_cols=110 Identities=15% Similarity=0.282 Sum_probs=103.3
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
.++.++|++.++++|+++|+++ +++.+||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||+++|+++
T Consensus 24 ~~~~~~l~~~a~~~p~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~ 102 (562)
T PRK05677 24 PNIQAVLKQSCQRFADKPAFSN-LGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIV 102 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEEE-CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 4789999999999999999986 45789999999999999999997 699999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
+|+||.++.+++.+++++++++++|+++.+.+
T Consensus 103 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 134 (562)
T PRK05677 103 VNTNPLYTAREMEHQFNDSGAKALVCLANMAH 134 (562)
T ss_pred eecCCCCCHHHHHHHHhccCceEEEEecchhh
Confidence 99999999999999999999999999876544
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=168.16 Aligned_cols=109 Identities=21% Similarity=0.337 Sum_probs=101.2
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCC-----ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDG-----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~-----~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k 86 (958)
..++.++|+++++++||++|+++.+. +.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||++
T Consensus 48 ~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 127 (624)
T PRK12582 48 PRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQ 127 (624)
T ss_pred ccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence 45789999999999999999975321 5899999999999999999999999999999999999999999999999
Q ss_pred HCCeEecCCCCCCH-----HHHHHHHhhcCCeEEEEccc
Q psy4557 87 AGGGYLPLETSYPP-----ALLESVLDDAKPSIVITKGE 120 (958)
Q Consensus 87 ~G~v~vPln~~~~~-----~~l~~il~~~~~~~vi~~~~ 120 (958)
+|+++||+||+++. +++.+++++++++++|+++.
T Consensus 128 ~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~ 166 (624)
T PRK12582 128 AGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSG 166 (624)
T ss_pred cCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCH
Confidence 99999999999985 99999999999999999764
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-12 Score=138.91 Aligned_cols=217 Identities=12% Similarity=0.096 Sum_probs=141.1
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.+++||||||||||++++++|+++ +.+|+++.|..+. ..++.+.+.. ...++.++.+|++.+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~-g~~v~~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~d~~~~----- 64 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEE-GAKVAVFDLNREA---AEKVAADIRA---------KGGNAQAFACDITDR----- 64 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEecCCHHH---HHHHHHHHHh---------cCCcEEEEEcCCCCH-----
Confidence 468999999999999999999976 4688888875422 2223222211 124688899998742
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCc---c-cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccc
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNL---I-LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~---~-~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v 460 (958)
++.+.+. ..+|+|||+|+.... . .+ ++....+|+.|+.++++.+. ..+.++++++||.+.
T Consensus 65 --~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~ 142 (250)
T TIGR03206 65 --DSVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAA 142 (250)
T ss_pred --HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 3333332 368999999986422 1 11 23457899999999988764 344578999999876
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCC----cChhHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKN----WNLVDLNL 532 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~----~n~~d~~~ 532 (958)
+... .....|+.||+..|.+++..+ ..|++++++|||.++++..... .+...
T Consensus 143 ~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~--- 202 (250)
T TIGR03206 143 RVGS-----------------SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEK--- 202 (250)
T ss_pred ccCC-----------------CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHH---
Confidence 6421 112469999999998887643 2489999999999987743211 11111
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
+...+.. ..|. -.+...+++|++++.++.... -.++++++.+.
T Consensus 203 -~~~~~~~--~~~~----~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 247 (250)
T TIGR03206 203 -LREAFTR--AIPL----GRLGQPDDLPGAILFFSSDDASFITGQVLSVSGG 247 (250)
T ss_pred -HHHHHHh--cCCc----cCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCCC
Confidence 1111111 1221 123456889999999876432 24678887653
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=164.42 Aligned_cols=110 Identities=22% Similarity=0.324 Sum_probs=103.4
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCC-----CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~-----~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k 86 (958)
..++.++|++.++.+|+++|+++.+ .+.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||++
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~ 102 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSR 102 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 4579999999999999999998632 16899999999999999999999999999999999999999999999999
Q ss_pred HCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 87 ~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+|++++|+||.++.+++.+++++++++++|+++++
T Consensus 103 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~ 137 (547)
T PRK13295 103 IGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTF 137 (547)
T ss_pred cCcEEeccccccCHHHHHHHHHhcCceEEEEeccc
Confidence 99999999999999999999999999999998765
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=168.29 Aligned_cols=106 Identities=22% Similarity=0.236 Sum_probs=98.3
Q ss_pred HHHHHHHHHhCCCCeEEEeCC-----CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 16 HYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 16 ~~~~~~~a~~~pd~~Al~~~~-----~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
.+.|+++++++|+++|+++.+ .+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 567788888899999998532 247999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
++|+|+.++.+++.+++++++++++|+++.+
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~ 180 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEG 180 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCcc
Confidence 9999999999999999999999999998754
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=165.59 Aligned_cols=107 Identities=23% Similarity=0.317 Sum_probs=100.0
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCc---------eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHH
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGR---------SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA 83 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~---------~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la 83 (958)
.++.++|.+.++++|+++|+++.++. .+||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la 85 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFA 85 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHH
Confidence 35788899999999999999864331 799999999999999999999999999999999999999999999
Q ss_pred HHHHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcc
Q psy4557 84 IHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKG 119 (958)
Q Consensus 84 ~~k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~ 119 (958)
|+++|+++||+||.++.+++.+++++++++++|+++
T Consensus 86 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~ 121 (552)
T PRK09274 86 LFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIP 121 (552)
T ss_pred HHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEecc
Confidence 999999999999999999999999999999999865
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=150.43 Aligned_cols=179 Identities=15% Similarity=0.057 Sum_probs=130.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh-----------------HHHHHHHhhcCCCcEEEEEecC
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-----------------LENLKTSLQNAPGSIIVKKLDV 774 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~-----------------l~~~~~~l~~~~~~~~~~~~Dv 774 (958)
..+++|+++||||+|+||+.++++|+++|++|++++|...+ .+.+.........++.++.+|+
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl 122 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI 122 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence 46788999999999999999999999999999998643110 0111110011123577889999
Q ss_pred CCHHHHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Q psy4557 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSN 854 (958)
Q Consensus 775 s~~~~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~ 854 (958)
+|.+++.++++.. ++|+|||+|+... ......++++++..+++|+.|++.+++++... ....++|++||.
T Consensus 123 ~d~~~v~~~l~~~-----~~D~ViHlAa~~~-~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~----gv~~~~V~~SS~ 192 (442)
T PLN02572 123 CDFEFLSEAFKSF-----EPDAVVHFGEQRS-APYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF----APDCHLVKLGTM 192 (442)
T ss_pred CCHHHHHHHHHhC-----CCCEEEECCCccc-ChhhhcChhhHHHHHHHHHHHHHHHHHHHHHh----CCCccEEEEecc
Confidence 9999988877753 6899999997643 23344456678889999999999999887542 222489999987
Q ss_pred cCcC------------------------CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCC
Q psy4557 855 AGVR------------------------PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTEL 903 (958)
Q Consensus 855 ~g~~------------------------~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~ 903 (958)
..+- +......|+.||.+.+.+.+..+.. +|+.+.++.|+.+.-+.
T Consensus 193 ~vYG~~~~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~---~gl~~v~lR~~~vyGp~ 262 (442)
T PLN02572 193 GEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVR 262 (442)
T ss_pred eecCCCCCCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHh---cCCCEEEEecccccCCC
Confidence 5321 1112357999999998888876654 58999999999887664
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-13 Score=162.96 Aligned_cols=116 Identities=21% Similarity=0.354 Sum_probs=106.8
Q ss_pred CccccHHHHHHHHHHhCCCCeEEEeCC-CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHC
Q psy4557 10 DAEGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (958)
Q Consensus 10 ~~~~~l~~~~~~~a~~~pd~~Al~~~~-~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G 88 (958)
+...++.+++.++++++|+++|+++.. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 20 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G 99 (537)
T PLN02246 20 PNHLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRG 99 (537)
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcC
Confidence 444579999999999999999998642 4689999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 89 ~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
++++|+||.++.+++.+++++++++++|+++.+.+.+
T Consensus 100 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 136 (537)
T PLN02246 100 AVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKL 136 (537)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHH
Confidence 9999999999999999999999999999988765544
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=147.58 Aligned_cols=212 Identities=16% Similarity=0.156 Sum_probs=137.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh-----HHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-----LENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~-----l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
|+++||||+|.||..++++|+++|++|++++|+.+. ++.+.+.... ....+.++.+|++|.+++.++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~--- 77 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI--- 77 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC---
Confidence 689999999999999999999999999999988542 2222211111 1235778899999999988777754
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----------C
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-----------P 859 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-----------~ 859 (958)
++|++||+|+...... ..+.-...+++|+.|+..+++++.+.-. +...++|++||..-.- +
T Consensus 78 --~~d~ViH~Aa~~~~~~----~~~~~~~~~~~n~~gt~~ll~a~~~~~~--~~~~~~v~~SS~~vyg~~~~~~~~E~~~ 149 (343)
T TIGR01472 78 --KPTEIYNLAAQSHVKV----SFEIPEYTADVDGIGTLRLLEAVRTLGL--IKSVKFYQASTSELYGKVQEIPQNETTP 149 (343)
T ss_pred --CCCEEEECCcccccch----hhhChHHHHHHHHHHHHHHHHHHHHhCC--CcCeeEEEeccHHhhCCCCCCCCCCCCC
Confidence 4899999999754321 1122246778999999999998865321 1124899999964221 1
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHhCCC---CcEEEEEECCcccCCCCCCCCChhhhhhh----------c-cccCCCCC
Q psy4557 860 FAGLAVYTGTKYFIEGISGALRQEVSDR---NIKVTCIQAGDVKTELLSHSTDRDVVDKY----------D-ISKAVPVL 925 (958)
Q Consensus 860 ~~~~~~Y~asKaa~~~l~~~la~el~~~---gIrv~~v~PG~v~T~~~~~~~~~~~~~~~----------~-~~~~~~~~ 925 (958)
....+.|++||.+.+.+++.++++++-. ++.+|...|+.-.+-+... -....... . ......++
T Consensus 150 ~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~g~~~rd~i 227 (343)
T TIGR01472 150 FYPRSPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRK--ITRAAAKIKLGLQEKLYLGNLDAKRDWG 227 (343)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchH--HHHHHHHHHcCCCCceeeCCCccccCce
Confidence 2245679999999999999998876322 2233455555321111000 00000000 0 00112356
Q ss_pred CHHHHHHHHHHHhcCC
Q psy4557 926 TTKEISQSIIFALLQP 941 (958)
Q Consensus 926 ~p~~ia~~i~~~l~~~ 941 (958)
-.+|++++++.++..+
T Consensus 228 ~V~D~a~a~~~~~~~~ 243 (343)
T TIGR01472 228 HAKDYVEAMWLMLQQD 243 (343)
T ss_pred eHHHHHHHHHHHHhcC
Confidence 8899999999877654
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-13 Score=171.39 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=100.9
Q ss_pred cccHHHHHHHHHHhCCC-CeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 12 EGALHYMFRNQAKRTPD-KIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd-~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
..++.++|.++++++|+ ++|+.+.+.+.+||+||.++++++|++|++. +++||+|+|+++|++++++++|||+++|++
T Consensus 203 ~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v 281 (718)
T PRK08043 203 RETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRI 281 (718)
T ss_pred CCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCc
Confidence 35688999999999998 6888642336899999999999999999987 599999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
+||+|+.++++|+++++++++++++|++.++.+
T Consensus 282 ~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~ 314 (718)
T PRK08043 282 PAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLD 314 (718)
T ss_pred ccccccCcCHHHHHHHHHHcCCcEEEEcHHHHh
Confidence 999999999999999999999999999876543
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-13 Score=146.51 Aligned_cols=109 Identities=24% Similarity=0.362 Sum_probs=103.0
Q ss_pred ccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 11 ~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
...++.+.+.++|+++||++|+++ ++++|||+||+++++++|..|+++|+++||+|.+.+||..++++++||.+|+|..
T Consensus 26 ~d~~l~d~L~~~A~~~pdriAv~d-~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~ 104 (542)
T COG1021 26 QDRTLTDILTDHAARYPDRIAVID-GERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVA 104 (542)
T ss_pred cCCcHHHHHHHHHhhcCCceEEec-CcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcc
Confidence 456899999999999999999987 4578999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGE 120 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~ 120 (958)
.|--=|.....||.+..+.++|+++|.+..
T Consensus 105 PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~ 134 (542)
T COG1021 105 PVLALPSHRASELGAFASQIEAALLIVARQ 134 (542)
T ss_pred hhhccchhhHHHHHHHHHhhcchheeechh
Confidence 999999999999999999999999998764
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-13 Score=162.33 Aligned_cols=115 Identities=19% Similarity=0.263 Sum_probs=106.9
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeC-CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~-~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
..++.+++.+.++++|+++|+.+. +++.+||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|++
T Consensus 27 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 106 (546)
T PLN02330 27 KLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV 106 (546)
T ss_pred CCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence 356899999999999999999863 3568999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhhh
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 126 (958)
+||+|+.++.+++.+++++++++++|+++.+.+.+.
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~ 142 (546)
T PLN02330 107 FSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVK 142 (546)
T ss_pred eccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHh
Confidence 999999999999999999999999999987766554
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=158.09 Aligned_cols=99 Identities=34% Similarity=0.608 Sum_probs=94.6
Q ss_pred HHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEecCCCCC
Q psy4557 19 FRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98 (958)
Q Consensus 19 ~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vPln~~~ 98 (958)
|+++|+++||++|+++..++.+||+||.++++++|..|++.|+++||+|+++++|+++++++++||+++|++++|++|.+
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~ 80 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL 80 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence 78999999999999873468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCeEEEE
Q psy4557 99 PPALLESVLDDAKPSIVIT 117 (958)
Q Consensus 99 ~~~~l~~il~~~~~~~vi~ 117 (958)
+.+++.++++.++++++|+
T Consensus 81 ~~~~~~~~l~~~~~~~ii~ 99 (417)
T PF00501_consen 81 SEDELRHILRQSGPKVIIT 99 (417)
T ss_dssp SHHHHHHHHHHHTESEEEE
T ss_pred ccccccccccccceeEEEE
Confidence 9999999999999999997
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=138.43 Aligned_cols=222 Identities=9% Similarity=0.047 Sum_probs=141.1
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||+||||++++++|++++ .+|++.+|..... . ......+.. ...++.++..|++.+
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g-~~v~~~~~~~~~~-~-~~~~~~~~~---------~~~~~~~~~~D~~~~----- 68 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEG-SLVVVNAKKRAEE-M-NETLKMVKE---------NGGEGIGVLADVSTR----- 68 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCChHH-H-HHHHHHHHH---------cCCeeEEEEeccCCH-----
Confidence 4689999999999999999999654 5677766643221 1 111111111 123566778888753
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhccC--CCccEEEEecccccC
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDSIYP 462 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~v~~ 462 (958)
+....+. ..+|+|||+||..... .+ ++....+|+.|+.++++.+... ...+|+++||...+.
T Consensus 69 --~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~ 146 (252)
T PRK06077 69 --EGCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR 146 (252)
T ss_pred --HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC
Confidence 3333332 4689999999963221 12 2355688999999998877642 225799999976653
Q ss_pred CCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhh---CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHH
Q psy4557 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ---MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAIT 539 (958)
Q Consensus 463 ~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~---~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~ 539 (958)
.. .+.+.|+.||...|.+++...+ .|+.+.+++||.+.++.......... ...+...
T Consensus 147 ~~-----------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~---~~~~~~~ 206 (252)
T PRK06077 147 PA-----------------YGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLG---MSEKEFA 206 (252)
T ss_pred CC-----------------CCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhccc---ccHHHHH
Confidence 11 2345899999999999876432 27899999999997654211110000 0001111
Q ss_pred HhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCC
Q psy4557 540 RLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNP 584 (958)
Q Consensus 540 ~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~ 584 (958)
. .......+++++++|++++.++......+++|++.+...
T Consensus 207 ~-----~~~~~~~~~~~~dva~~~~~~~~~~~~~g~~~~i~~g~~ 246 (252)
T PRK06077 207 E-----KFTLMGKILDPEEVAEFVAAILKIESITGQVFVLDSGES 246 (252)
T ss_pred H-----hcCcCCCCCCHHHHHHHHHHHhCccccCCCeEEecCCee
Confidence 1 111123679999999999998876555678999887543
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=161.98 Aligned_cols=111 Identities=20% Similarity=0.261 Sum_probs=103.3
Q ss_pred ccccHHHHHHHHHHhCCCCeEEEeCC-CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCC
Q psy4557 11 AEGALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (958)
Q Consensus 11 ~~~~l~~~~~~~a~~~pd~~Al~~~~-~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~ 89 (958)
...++.++|.+.++++|+++|+++.+ .+.+||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++|+
T Consensus 14 ~~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 93 (534)
T PRK05852 14 FGPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADL 93 (534)
T ss_pred hcccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCc
Confidence 44679999999999999999998643 34799999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 90 v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+++|+|+.++.+++.+++++++++++|++...
T Consensus 94 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~ 125 (534)
T PRK05852 94 VVVPLDPALPIAEQRVRSQAAGARVVLIDADG 125 (534)
T ss_pred EEeecCCCCCcHHHHHHHHhCCCCEEEEcCCC
Confidence 99999999999999999999999999998643
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=161.80 Aligned_cols=111 Identities=25% Similarity=0.430 Sum_probs=105.0
Q ss_pred cHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEec
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vP 93 (958)
++.++|.+.++++|+++|+.+ +++.+||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|++++|
T Consensus 4 ~l~~~~~~~a~~~p~~~a~~~-~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~ 82 (533)
T PRK07798 4 NIADLFEAVADAVPDRVALVC-GDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVN 82 (533)
T ss_pred cHHHHHHHHHHhCCCceEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEe
Confidence 588999999999999999987 5678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 94 ln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+++.++.+++.++++++++++++++..+.+.+
T Consensus 83 l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 114 (533)
T PRK07798 83 VNYRYVEDELRYLLDDSDAVALVYEREFAPRV 114 (533)
T ss_pred cCcCCCHHHHHHHHhhcCCCEEEEchhhHHHH
Confidence 99999999999999999999999987665443
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-13 Score=161.02 Aligned_cols=112 Identities=21% Similarity=0.400 Sum_probs=104.8
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.+.|.+++..+|+++|+++ +++.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++|
T Consensus 35 ~~~~~~~~~~a~~~p~~~a~~~-~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~v 113 (516)
T PRK13383 35 TNPYTLLAVTAARWPGRTAIID-DDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVV 113 (516)
T ss_pred CcHHHHHHHHHHHCCCCcEEEe-CCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEE
Confidence 4688889999999999999987 456899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|+|+.++.+++.+++++++++++++++.+.+.+
T Consensus 114 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 146 (516)
T PRK13383 114 PISTEFRSDALAAALRAHHISTVVADNEFAERI 146 (516)
T ss_pred EcCccCCHHHHHHHHhcCCCCEEEEchhHHHHH
Confidence 999999999999999999999999988765543
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-13 Score=144.64 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=83.7
Q ss_pred HHHHHHhCCCCeEEEeC-C----CceeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 19 FRNQAKRTPDKIAVVDH-D----GRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 19 ~~~~a~~~pd~~Al~~~-~----~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
+...++++|+++|+++. + ++++||+||.++++++|+.|++ .|+++||||+|+++|++++++++||++++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 35677889999999742 2 2369999999999999999998 7999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|+| +++++++|+++++.+.+
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~~ 101 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAAA 101 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhhc
Confidence 996 89999999998776553
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-13 Score=164.01 Aligned_cols=113 Identities=23% Similarity=0.354 Sum_probs=106.4
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
..++.+.|.+.++++|+++|+++ +++.+||+||.++++++|++|.+.|+++||+|+|+++|+++++++++||+++|+++
T Consensus 36 ~~tl~~~l~~~a~~~p~~~Ai~~-~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~ 114 (600)
T PRK08279 36 KRSLGDVFEEAAARHPDRPALLF-EDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVV 114 (600)
T ss_pred cccHHHHHHHHHHhCCCCcEEEe-CCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 45799999999999999999987 46789999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+|+|+.++.+++.+++++++++++|++.++.+.+
T Consensus 115 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 148 (600)
T PRK08279 115 ALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAF 148 (600)
T ss_pred eecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 9999999999999999999999999998765544
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-12 Score=136.61 Aligned_cols=215 Identities=13% Similarity=0.082 Sum_probs=139.6
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCC-hhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETP-NKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~-~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++||||||+|+||.+++++|+++ +.+|+++.|... .....+.+.+.+.. ...++.++.+|++.+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~Dl~~~---- 71 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAAD-GADVIVLDIHPMRGRAEADAVAAGIEA---------AGGKALGLAFDVRDF---- 71 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCeEEEEcCcccccHHHHHHHHHHHHh---------cCCcEEEEEccCCCH----
Confidence 468999999999999999999976 457877766432 12222222222211 134688899998753
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCc----ccC---hHHHHhhhHHHHHHHHHhhc-----cCCCccEEEEecc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNL----ILP---YNALYKSNVLATKNLIEFSF-----LNKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~----~~~---~~~~~~~NV~gt~~ll~~a~-----~~~~k~~~~vST~ 458 (958)
+....+. ..+|.|||+|+.... ..+ +.....+|+.|+.++++.+. ..+.++|+++||.
T Consensus 72 ---~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~ 148 (249)
T PRK12827 72 ---AATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASV 148 (249)
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 3333332 468999999997642 111 33456789999999999886 3455789999997
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
..+... .....|+.||...+.+++..+ ..|++++++|||.+.++...... ....+
T Consensus 149 ~~~~~~-----------------~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~----~~~~~ 207 (249)
T PRK12827 149 AGVRGN-----------------RGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAA----PTEHL 207 (249)
T ss_pred hhcCCC-----------------CCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccc----hHHHH
Confidence 654311 123479999999998887643 24899999999999886532211 11111
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
. . ..| ...+.+++.+++.++.+..... ..+..+++.+
T Consensus 208 ~----~--~~~----~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~ 246 (249)
T PRK12827 208 L----N--PVP----VQRLGEPDEVAALVAFLVSDAASYVTGQVIPVDG 246 (249)
T ss_pred H----h--hCC----CcCCcCHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence 1 1 112 1124578999999988875432 2367777764
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-13 Score=165.36 Aligned_cols=110 Identities=22% Similarity=0.320 Sum_probs=101.1
Q ss_pred ccccHHHHHHHHHHhCCCCeEEEeC---CC-----ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHH
Q psy4557 11 AEGALHYMFRNQAKRTPDKIAVVDH---DG-----RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYI 82 (958)
Q Consensus 11 ~~~~l~~~~~~~a~~~pd~~Al~~~---~~-----~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~l 82 (958)
...++.++|.+.++++|+++|+... .+ +.+||+||.++++++|++|++.|+++||+|+|+++|++||++++|
T Consensus 40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l 119 (660)
T PLN02430 40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME 119 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4468999999999999999998531 11 246999999999999999999999999999999999999999999
Q ss_pred HHHHHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q psy4557 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120 (958)
Q Consensus 83 a~~k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~ 120 (958)
||+++|+++|||++.++++++.|++++++++++|++..
T Consensus 120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~ 157 (660)
T PLN02430 120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDK 157 (660)
T ss_pred HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHH
Confidence 99999999999999999999999999999999999764
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=140.81 Aligned_cols=219 Identities=16% Similarity=0.112 Sum_probs=142.3
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||+|+||.++++.|+++ +.+|+++.|.... .+++.+. ...++.++.+|++.+
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~---~~~~~~~------------~~~~~~~~~~D~~~~----- 64 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAE-GARVVIADIKPAR---ARLAALE------------IGPAAIAVSLDVTRQ----- 64 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEcCCHHH---HHHHHHH------------hCCceEEEEccCCCH-----
Confidence 468999999999999999999976 4688888775321 1222111 123578888998743
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccC-----CCccEEEEeccc
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLN-----KIKSFHYVSTDS 459 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~-----~~k~~~~vST~~ 459 (958)
++...+. ..+|++||+|+..... ..++..+.+|+.|+.++++.+... ...+|+++||..
T Consensus 65 --~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~ 142 (257)
T PRK07067 65 --DSIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQA 142 (257)
T ss_pred --HHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHH
Confidence 3444333 3689999999976431 234556789999999999887532 124799999854
Q ss_pred c-cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 460 I-YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 460 v-~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
. ++. .+...|+.||...+.+++... .+|++++++|||.++++..... ...+...
T Consensus 143 ~~~~~------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~---~~~~~~~ 201 (257)
T PRK07067 143 GRRGE------------------ALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQV---DALFARY 201 (257)
T ss_pred hCCCC------------------CCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhh---hhhhhhc
Confidence 2 210 124579999999999887643 4699999999999988642110 0000000
Q ss_pred ----H-HHHHHh-CCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCC
Q psy4557 535 ----L-KAITRL-GYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPI 585 (958)
Q Consensus 535 ----~-~~~~~~-g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~ 585 (958)
. ...... +..| ...+.+++.+|++++.++.... ..+.+|++.+.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~----~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~~~ 256 (257)
T PRK07067 202 ENRPPGEKKRLVGEAVP----LGRMGVPDDLTGMALFLASADADYIVAQTYNVDGGNWM 256 (257)
T ss_pred cCCCHHHHHHHHhhcCC----CCCccCHHHHHHHHHHHhCcccccccCcEEeecCCEeC
Confidence 0 000011 1112 2457889999999999886542 25789998765443
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-13 Score=158.02 Aligned_cols=111 Identities=25% Similarity=0.308 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.+++++|++++.++||++|+++. ++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~-~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v 80 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFE-EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAV 80 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeC-CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEE
Confidence 36889999999999999999864 57899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
|+++.++.+++.+++++++++++|+++.+...
T Consensus 81 ~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 112 (483)
T PRK03640 81 LLNTRLSREELLWQLDDAEVKCLITDDDFEAK 112 (483)
T ss_pred ecCcCCCHHHHHHHHHhCCCCEEEEcchhhHH
Confidence 99999999999999999999999998765543
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.7e-13 Score=161.25 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=105.3
Q ss_pred cccHHHHHHHHHHhCCCCeEEEe---CCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHC
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVD---HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~---~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G 88 (958)
..++.++|++.++++|++++++. ...+++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G 88 (542)
T PRK06018 9 PLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIG 88 (542)
T ss_pred CCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcC
Confidence 34789999999999999999973 123679999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 89 ~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
++++|+|++++.+++.++++++++++++++.++.+.+
T Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~ 125 (542)
T PRK06018 89 AICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPIL 125 (542)
T ss_pred eEeeccccccCHHHHHHHHhccCCCEEEEccccHHHH
Confidence 9999999999999999999999999999998776544
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.5e-13 Score=160.68 Aligned_cols=113 Identities=20% Similarity=0.311 Sum_probs=106.5
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
..++.++|.++++.+|+++|+++ +++.+||+||.++++++|..|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus 20 ~~~l~~~l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~ 98 (542)
T PRK06155 20 ERTLPAMLARQAERYPDRPLLVF-GGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIA 98 (542)
T ss_pred ccCHHHHHHHHHHHCCCCeEEEe-CCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEE
Confidence 45789999999999999999986 45789999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+|+|+.++.+++.++++++++++++++.++.+.+
T Consensus 99 vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~ 132 (542)
T PRK06155 99 VPINTALRGPQLEHILRNSGARLLVVEAALLAAL 132 (542)
T ss_pred EEeccccCHHHHHHHHHhcCceEEEEChhhHHHH
Confidence 9999999999999999999999999988766544
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.4e-13 Score=159.03 Aligned_cols=113 Identities=17% Similarity=0.313 Sum_probs=105.2
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCC----CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~----~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~ 87 (958)
+.++.++|.+.++++|+++|+++.+ .+.+||+||.++++++|+.|.++|+++||+|+++++|+.++++++|||+++
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~ 85 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKI 85 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 4579999999999999999998532 258999999999999999999999999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 88 G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
|++++|+++.++.+++.+++++++++++|++.++.+.
T Consensus 86 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 122 (517)
T PRK08008 86 GAIMVPINARLLREESAWILQNSQASLLVTSAQFYPM 122 (517)
T ss_pred CeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHH
Confidence 9999999999999999999999999999998876543
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-12 Score=135.90 Aligned_cols=207 Identities=14% Similarity=0.066 Sum_probs=137.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||||++|.++++.|+++ +.+|+++.|..... .+.+.+ +. ..++.++.+|+..
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~-G~~v~~~~r~~~~~--~~~~~~-~~-----------~~~~~~~~~D~~~----- 65 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAAR-GARVALIGRGAAPL--SQTLPG-VP-----------ADALRIGGIDLVD----- 65 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHC-CCeEEEEeCChHhH--HHHHHH-Hh-----------hcCceEEEeecCC-----
Confidence 3578999999999999999999877 57899999864321 111111 10 1235566788764
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
.++...+. ..+|+|||+|+..... . .+.+....|+.|+.++++.+. ..+.++|+++||.+
T Consensus 66 --~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~ 143 (239)
T PRK12828 66 --PQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGA 143 (239)
T ss_pred --HHHHHHHHHHHHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchH
Confidence 23333332 3689999999864321 1 234456789999999988764 34568999999987
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.+|...+.+++... ..|+++.++|||.++++.....
T Consensus 144 ~~~~~-----------------~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~----------- 195 (239)
T PRK12828 144 ALKAG-----------------PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRAD----------- 195 (239)
T ss_pred hccCC-----------------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhc-----------
Confidence 65421 123469999999998886533 3589999999999987621100
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN 583 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~ 583 (958)
.|. .....|++++++++++..+..... -.+..+++..+.
T Consensus 196 --------~~~-~~~~~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g~~ 236 (239)
T PRK12828 196 --------MPD-ADFSRWVTPEQIAAVIAFLLSDEAQAITGASIPVDGGV 236 (239)
T ss_pred --------CCc-hhhhcCCCHHHHHHHHHHHhCcccccccceEEEecCCE
Confidence 111 111236889999999998886432 246777776543
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9e-12 Score=134.08 Aligned_cols=217 Identities=12% Similarity=0.083 Sum_probs=139.3
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.+++|||||+|+||++++++|++++ .+|+++.+... . ..+.+.+.+. ....++.++..|++.+
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g-~~v~~~~~~~~-~-~~~~~~~~l~---------~~~~~~~~~~~D~~~~---- 68 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEG-AKVVINYNSSK-E-AAENLVNELG---------KEGHDVYAVQADVSKV---- 68 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEcCCcH-H-HHHHHHHHHH---------hcCCeEEEEECCCCCH----
Confidence 35789999999999999999999764 67766554322 1 1222222111 1124688899998743
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~ 459 (958)
+....+. ..+|+|||+|+..... ..+++.+.+|+.|+.++++.+.. .+..+|+++||..
T Consensus 69 ---~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 145 (247)
T PRK12935 69 ---EDANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSII 145 (247)
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchh
Confidence 3333333 3489999999975421 23445678999999999888752 3346899999864
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...|.+++... ..|+++++++||.+.++..... ..+ ..
T Consensus 146 ~~~~~-----------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~--~~~----~~ 202 (247)
T PRK12935 146 GQAGG-----------------FGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEV--PEE----VR 202 (247)
T ss_pred hcCCC-----------------CCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhc--cHH----HH
Confidence 32210 123579999999888876532 3499999999999876432111 111 11
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC-CCCceEEecCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN-NANKIYNFINT 582 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~-~~~~v~h~~n~ 582 (958)
..... + .+ ..++..+++++++++.++.... -.+++||+.+.
T Consensus 203 ~~~~~-~-~~----~~~~~~~edva~~~~~~~~~~~~~~g~~~~i~~g 244 (247)
T PRK12935 203 QKIVA-K-IP----KKRFGQADEIAKGVVYLCRDGAYITGQQLNINGG 244 (247)
T ss_pred HHHHH-h-CC----CCCCcCHHHHHHHHHHHcCcccCccCCEEEeCCC
Confidence 11111 1 11 2346899999999999875432 35688998764
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-13 Score=161.27 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=102.5
Q ss_pred cHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEec
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vP 93 (958)
++...|.+.+..+|+++|+.+ +++.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus 21 ~~~~~~~~~~~~~p~~~a~~~-~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~ 99 (567)
T PLN02479 21 TPLWFLERAAVVHPTRKSVVH-GSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNC 99 (567)
T ss_pred CHHHHHHHHHhhCCCceEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEE
Confidence 467788899999999999986 4578999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 94 LETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 94 ln~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
+|+.++.+++.+++++++++++|+++++.+
T Consensus 100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 129 (567)
T PLN02479 100 VNIRLNAPTIAFLLEHSKSEVVMVDQEFFT 129 (567)
T ss_pred eccccCHHHHHHHHhhcCceEEEEchhhhh
Confidence 999999999999999999999999877654
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.4e-13 Score=161.24 Aligned_cols=110 Identities=18% Similarity=0.260 Sum_probs=103.8
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.++++++++++|+++|+.+ .++.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++|
T Consensus 32 ~~l~~~~~~~~~~~p~~~a~~~-~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v 110 (573)
T PRK05605 32 TTLVDLYDNAVARFGDRPALDF-FGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVV 110 (573)
T ss_pred CCHHHHHHHHHHHCCCCeEEEe-CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEe
Confidence 3689999999999999999986 467899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
|+||.++.+++.+++.+++++++|+++....
T Consensus 111 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 141 (573)
T PRK05605 111 EHNPLYTAHELEHPFEDHGARVAIVWDKVAP 141 (573)
T ss_pred ecCcCCCHHHHHHHHhccCCcEEEechhhHH
Confidence 9999999999999999999999999776443
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-12 Score=141.32 Aligned_cols=206 Identities=17% Similarity=0.161 Sum_probs=140.0
Q ss_pred EEEEEcCCchHHHHHHHHHHHcC--CeEEEEecCh--hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRI--DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.++||||+|+||.+++++|+++| .+|++.+|.. .+.+.+. .+.. ...+.++.+|+++++++.++++.. +
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~-----~ 73 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLA-DLED-NPRYRFVKGDIGDRELVSRLFTEH-----Q 73 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhh-hhcc-CCCcEEEEcCCcCHHHHHHHHhhc-----C
Confidence 38999999999999999999988 7888887632 1222222 1211 235677889999999988877642 5
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC------------CCC
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR------------PFA 861 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~------------~~~ 861 (958)
+|++||+||..... .+.+.++..+++|+.|+..+++++...+ .+.++|++||....- +..
T Consensus 74 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~ 145 (317)
T TIGR01181 74 PDAVVHFAAESHVD----RSISGPAAFIETNVVGTYTLLEAVRKYW----HEFRFHHISTDEVYGDLEKGDAFTETTPLA 145 (317)
T ss_pred CCEEEEcccccCch----hhhhCHHHHHHHHHHHHHHHHHHHHhcC----CCceEEEeeccceeCCCCCCCCcCCCCCCC
Confidence 89999999975422 2334567889999999999988775533 235899999854211 112
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhccc----------cCCCCCCHHHH
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYDIS----------KAVPVLTTKEI 930 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~~~----------~~~~~~~p~~i 930 (958)
....|+.+|++.+.+++.++.+. |+++.++.|+.+.-+...... ........... ....++..+|+
T Consensus 146 ~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~ 222 (317)
T TIGR01181 146 PSSPYSASKAASDHLVRAYHRTY---GLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDH 222 (317)
T ss_pred CCCchHHHHHHHHHHHHHHHHHh---CCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHH
Confidence 34579999999999999887764 789999999988765422110 00110110000 01135678999
Q ss_pred HHHHHHHhcCC
Q psy4557 931 SQSIIFALLQP 941 (958)
Q Consensus 931 a~~i~~~l~~~ 941 (958)
++++..++.++
T Consensus 223 a~~~~~~~~~~ 233 (317)
T TIGR01181 223 CRAIYLVLEKG 233 (317)
T ss_pred HHHHHHHHcCC
Confidence 99999877654
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-13 Score=159.08 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=102.7
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
..++.++|+++++.+|+++|+.+ +++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 20 ~~~~~~~~~~~~~~~p~~~a~~~-~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~ 98 (541)
T TIGR03205 20 RGTLPDLLSKAAADYGPRPALEF-RDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV 98 (541)
T ss_pred CCCHHHHHHHHHHHcCCCceEEE-CCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence 45799999999999999999986 45789999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGE 120 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~ 120 (958)
||+||.++.+++.+++++++++++|+++.
T Consensus 99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~ 127 (541)
T TIGR03205 99 VHLSPLDGERALSHKLSDSGARLLITSDL 127 (541)
T ss_pred EecCCCCCHHHHHHHHhhcCceEEEEeCc
Confidence 99999999999999999999999998753
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-12 Score=138.29 Aligned_cols=220 Identities=10% Similarity=0.023 Sum_probs=137.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||+|++|++++++|+++ +.+|+++.|.... .+.+.+.. . ..++.++.+|++.+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~-g~~V~~~~r~~~~---~~~~~~~~---------~--~~~~~~~~~D~~~~---- 70 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEA-GARVHVCDVSEAA---LAATAARL---------P--GAKVTATVADVADP---- 70 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHH---HHHHHHHH---------h--cCceEEEEccCCCH----
Confidence 4578999999999999999999976 4679999985321 12222111 1 11578889998753
Q ss_pred CcHHHHHHH-------hcccCEEEEcccccCcc-----cC---hHHHHhhhHHHHHHHHHhhc----cCCC-ccEEEEec
Q psy4557 398 KNQDEYVSL-------SYEIDMIIHAAAFVNLI-----LP---YNALYKSNVLATKNLIEFSF----LNKI-KSFHYVST 457 (958)
Q Consensus 398 ~~~~~~~~l-------~~~vd~IiH~AA~v~~~-----~~---~~~~~~~NV~gt~~ll~~a~----~~~~-k~~~~vST 457 (958)
+....+ ...+|+|||+|+..... .+ +....++|+.|+.++++.+. ..+. +.|+++||
T Consensus 71 ---~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss 147 (264)
T PRK12829 71 ---AQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSS 147 (264)
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 333222 24789999999976221 11 24567899999999888663 2333 45777776
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcCh-----h
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNL-----V 528 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~-----~ 528 (958)
.+..... .....|+.+|...|.++...+ ..|++++++|||.++|+........ .
T Consensus 148 ~~~~~~~-----------------~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~ 210 (264)
T PRK12829 148 VAGRLGY-----------------PGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLG 210 (264)
T ss_pred cccccCC-----------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccC
Confidence 4321100 112469999999999887633 3589999999999998753111000 0
Q ss_pred HHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 529 DLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 529 d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
......... .....| ...++.++++++++..+.... ...+.+|++.+.
T Consensus 211 ~~~~~~~~~--~~~~~~----~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g 260 (264)
T PRK12829 211 IGLDEMEQE--YLEKIS----LGRMVEPEDIAATALFLASPAARYITGQAISVDGN 260 (264)
T ss_pred CChhHHHHH--HHhcCC----CCCCCCHHHHHHHHHHHcCccccCccCcEEEeCCC
Confidence 000000000 001111 224799999999998887532 234678888764
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-13 Score=156.86 Aligned_cols=111 Identities=24% Similarity=0.418 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.+.+.+++.|+.+||++|+++ +++.+||+||.++++++|++|++ .|+++|++|+++++|++++++++|||+++|++++
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~-~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~ 81 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIIT-EEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEE-CCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence 478899999999999999986 56899999999999999999985 7999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|++++++.+++.+++++++++++++++++.+.+
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 114 (496)
T PRK06839 82 PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMA 114 (496)
T ss_pred ecCcccCHHHHHHHHHhcCceEEEEcHHHHHHH
Confidence 999999999999999999999999988765443
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.2e-12 Score=135.19 Aligned_cols=220 Identities=12% Similarity=0.091 Sum_probs=142.9
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||..++++|+++ +.+|+++.|.... .+.+.+.+.. ...++.++.+|++.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~-G~~V~~~~r~~~~---~~~~~~~i~~---------~~~~~~~~~~D~~~----- 70 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQA-GAEVILNGRDPAK---LAAAAESLKG---------QGLSAHALAFDVTD----- 70 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHc-CCEEEEEeCCHHH---HHHHHHHHHh---------cCceEEEEEccCCC-----
Confidence 4679999999999999999999976 4688888875321 1122222211 12357788889874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhcc----CCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~ 459 (958)
.+....+. ..+|+|||+|+..... .+ ++....+|+.|+.++++.+.. .+.++++++||..
T Consensus 71 --~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~ 148 (255)
T PRK07523 71 --HDAVRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQ 148 (255)
T ss_pred --HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccch
Confidence 34444443 3589999999975321 12 244567999999999987753 2456899999865
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
..... .....|+.||...|.+++... .+|++++++|||.+.++.........++.
T Consensus 149 ~~~~~-----------------~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~---- 207 (255)
T PRK07523 149 SALAR-----------------PGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFS---- 207 (255)
T ss_pred hccCC-----------------CCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHH----
Confidence 42110 123579999999999987643 46999999999999887532211111111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNP 584 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~ 584 (958)
+.. .. ..|- ..+..++++|++++.++.... -.+.++++.+...
T Consensus 208 ~~~-~~-~~~~----~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~~ 252 (255)
T PRK07523 208 AWL-EK-RTPA----GRWGKVEELVGACVFLASDASSFVNGHVLYVDGGIT 252 (255)
T ss_pred HHH-Hh-cCCC----CCCcCHHHHHHHHHHHcCchhcCccCcEEEECCCee
Confidence 111 11 1221 235678999999998886432 2467788776543
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-12 Score=135.42 Aligned_cols=218 Identities=11% Similarity=0.040 Sum_probs=134.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.+++|||||+|+||.+++++|++++ .+|+++.|.... ..+.+.+.. ...++.++.+|++.+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G-~~v~~~~r~~~~----~~~~~~~~~---------~~~~~~~~~~D~~~~---- 68 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEG-ARVVLVDRSELV----HEVAAELRA---------AGGEALALTADLETY---- 68 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCchHH----HHHHHHHHh---------cCCeEEEEEEeCCCH----
Confidence 46789999999999999999998764 678777775321 112111111 124677888998752
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcccC--------hHHHHhhhHHHHHHHHHh----hccCCCccEEEEecc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLILP--------YNALYKSNVLATKNLIEF----SFLNKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~~~--------~~~~~~~NV~gt~~ll~~----a~~~~~k~~~~vST~ 458 (958)
++...+. ..+|++||+|+......+ +.....+|+.|+..+++. ..+.+..+++++||.
T Consensus 69 ---~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~ 145 (260)
T PRK12823 69 ---AGAQAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSI 145 (260)
T ss_pred ---HHHHHHHHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCc
Confidence 2233222 368999999985322122 234457899888766543 334445689999998
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCC---CC--c-C-h
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEF---KN--W-N-L 527 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~---g~--~-n-~ 527 (958)
+.++. ....|+.||+..|.+++..+ .+|+++.+++||.|+++... .. . . .
T Consensus 146 ~~~~~-------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~ 206 (260)
T PRK12823 146 ATRGI-------------------NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQE 206 (260)
T ss_pred cccCC-------------------CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccc
Confidence 76431 11369999999999887632 34999999999999986311 00 0 0 0
Q ss_pred hHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 528 VDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 528 ~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
..+...+.+.... ..| + --+..+++++++++.+..... ..+.++++..
T Consensus 207 ~~~~~~~~~~~~~--~~~-~---~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~g 256 (260)
T PRK12823 207 KAWYQQIVDQTLD--SSL-M---KRYGTIDEQVAAILFLASDEASYITGTVLPVGG 256 (260)
T ss_pred cccHHHHHHHHhc--cCC-c---ccCCCHHHHHHHHHHHcCcccccccCcEEeecC
Confidence 0111122221111 112 1 123467999999988875432 2466777754
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-12 Score=143.72 Aligned_cols=170 Identities=21% Similarity=0.275 Sum_probs=123.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhH----HHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRL----ENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l----~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
+|++|+++||||+|+||..++++|+++|++|++++|..... ..+.........++.++.+|+++.+++.++++..
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~- 80 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST- 80 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC-
Confidence 57889999999999999999999999999999998754322 2222221112345778899999999988877642
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC----------
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR---------- 858 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~---------- 858 (958)
.+|++|||||..... .+.+.+...+++|+.++..+++++ . ..+.+++|++||....-
T Consensus 81 ----~~d~vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~-~~~~~~~v~~Ss~~vyg~~~~~~~~E~ 147 (352)
T PLN02240 81 ----RFDAVIHFAGLKAVG----ESVAKPLLYYDNNLVGTINLLEVM----A-KHGCKKLVFSSSATVYGQPEEVPCTEE 147 (352)
T ss_pred ----CCCEEEEccccCCcc----ccccCHHHHHHHHHHHHHHHHHHH----H-HcCCCEEEEEccHHHhCCCCCCCCCCC
Confidence 689999999975321 133467789999999999888754 2 22336899999964321
Q ss_pred -CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCc
Q psy4557 859 -PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGD 898 (958)
Q Consensus 859 -~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~ 898 (958)
+......|+.||.+.+.+.+.++.+ ..++.+..+.|+.
T Consensus 148 ~~~~~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~~R~~~ 186 (352)
T PLN02240 148 FPLSATNPYGRTKLFIEEICRDIHAS--DPEWKIILLRYFN 186 (352)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh--cCCCCEEEEeecC
Confidence 1123567999999999999988765 2356666666543
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-13 Score=153.83 Aligned_cols=107 Identities=17% Similarity=0.241 Sum_probs=94.7
Q ss_pred HHHHHHHh-CCCCeEEEeCC----CceeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 18 MFRNQAKR-TPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 18 ~~~~~a~~-~pd~~Al~~~~----~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
.++++... .+|++|+++.+ .+++||+||.++++|+|++|++ .|+ +||||+|+|||.+|.+++||||+|+||++
T Consensus 14 ~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~ 92 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP 92 (528)
T ss_pred hhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 45566543 47899998742 2689999999999999999986 668 99999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+|+.+.++++.+++.++|+++++||+.+......
T Consensus 93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~g 126 (528)
T COG0365 93 AVVSPGLSAEAVADRIADLGPKVLIADDGTFRNG 126 (528)
T ss_pred eecccCCCHHHHHHHHHccCCCEEEEeccccccc
Confidence 9999999999999999999999999988766543
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.6e-12 Score=134.45 Aligned_cols=217 Identities=13% Similarity=0.023 Sum_probs=136.7
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEE-eccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFC-PVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~c-lvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++||||||||+||.++++.|++++ .+|++ +.|.... .+.+.+.+.. ...++.++.+|++.+
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g-~~v~~~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~D~~~~---- 66 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEG-YDIAVNYARSRKA---AEETAEEIEA---------LGRKALAVKANVGDV---- 66 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHH---HHHHHHHHHh---------cCCeEEEEEcCCCCH----
Confidence 4689999999999999999999764 56554 4554321 1122221111 124678889998743
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----cCh---HHHHhhhHHHHHHHHHhhcc----CCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----LPY---NALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~~---~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~ 459 (958)
++...+. ..+|+|||+|+..... .+. .....+|+.|+.++++.+.. .+.++|+|+||..
T Consensus 67 ---~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~ 143 (250)
T PRK08063 67 ---EKIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLG 143 (250)
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchh
Confidence 3333332 3589999999864321 122 23456899999999877653 3446899999865
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||+..|.+++... ..|+++++++||.+..+......... .+.
T Consensus 144 ~~~~~-----------------~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~----~~~ 202 (250)
T PRK08063 144 SIRYL-----------------ENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNRE----ELL 202 (250)
T ss_pred hccCC-----------------CCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCch----HHH
Confidence 43210 123479999999999987633 35899999999999765421111111 111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.... ...| ...+++.+++|++++.+...+. ..+..+++.+.
T Consensus 203 ~~~~--~~~~----~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg 245 (250)
T PRK08063 203 EDAR--AKTP----AGRMVEPEDVANAVLFLCSPEADMIRGQTIIVDGG 245 (250)
T ss_pred HHHh--cCCC----CCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence 1111 1112 1236888999999998876432 24677877654
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.9e-13 Score=162.71 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=90.6
Q ss_pred hCCCCeEEEeCC----CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEecCCCCCCH
Q psy4557 25 RTPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100 (958)
Q Consensus 25 ~~pd~~Al~~~~----~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vPln~~~~~ 100 (958)
.+++++|+++.+ .+++||+||.++++++|++|++.|+++||||+++++|++++++++|||+++|++++|+|+.+++
T Consensus 96 ~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~ 175 (652)
T TIGR01217 96 AAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGA 175 (652)
T ss_pred cCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCH
Confidence 357899987632 1479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCeEEEEcccch
Q psy4557 101 ALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 101 ~~l~~il~~~~~~~vi~~~~~~ 122 (958)
+++.+++++++|++||+++.+.
T Consensus 176 ~~l~~~l~~~~~k~li~~~~~~ 197 (652)
T TIGR01217 176 RGVLDRFQQIEPKLLFTVDGYR 197 (652)
T ss_pred HHHHHHHHhcCCcEEEEccccc
Confidence 9999999999999999987543
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=158.24 Aligned_cols=110 Identities=21% Similarity=0.315 Sum_probs=102.8
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeC-----CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~-----~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k 86 (958)
..++.++|++.++.+|+++|++.. .++.+||+||.++++++|++|++.|+++|++|+++++|+++++++++||++
T Consensus 21 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~ 100 (538)
T TIGR03208 21 DRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACAR 100 (538)
T ss_pred cCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 457899999999999999999741 235899999999999999999999999999999999999999999999999
Q ss_pred HCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 87 ~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+|+++||++|.++.+++.+++++++++++|+++.+
T Consensus 101 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~ 135 (538)
T TIGR03208 101 IGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVF 135 (538)
T ss_pred cCEEEeccCcccCHHHHHHHHHhcCCeEEEEcccc
Confidence 99999999999999999999999999999998765
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-12 Score=134.29 Aligned_cols=215 Identities=13% Similarity=0.115 Sum_probs=140.7
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||+|++|.+|++.|+++ +.+|+.+.|..... +.+.+.+. ....++.++.+|++.+
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~-g~~v~~~~r~~~~~---~~~~~~~~---------~~~~~~~~~~~D~~~~----- 66 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAAD-GAKVVIYDSNEEAA---EALAAELR---------AAGGEARVLVFDVSDE----- 66 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCChhHH---HHHHHHHH---------hcCCceEEEEccCCCH-----
Confidence 468999999999999999999976 45688888864321 12222111 1235678888998743
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCccc-------ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccc
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNLIL-------PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~~~-------~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v 460 (958)
+....+. ..+|.|||+|+...... .+......|+.|+.++++.+. ..+.++|+++||.+.
T Consensus 67 --~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~ 144 (246)
T PRK05653 67 --AAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSG 144 (246)
T ss_pred --HHHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHh
Confidence 3333332 35799999999764421 134457789999999987763 445579999998653
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
.... .....|+.||...|.+++... ..|++++++|||.+.++...+ .... +.+
T Consensus 145 ~~~~-----------------~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~---~~~~---~~~ 201 (246)
T PRK05653 145 VTGN-----------------PGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG---LPEE---VKA 201 (246)
T ss_pred ccCC-----------------CCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh---hhHH---HHH
Confidence 2110 123469999999998887643 348999999999998875321 0111 111
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
. .. ...| ...++.++.+++.++.+.... ...+.+|++.+.
T Consensus 202 ~-~~-~~~~----~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg 243 (246)
T PRK05653 202 E-IL-KEIP----LGRLGQPEEVANAVAFLASDAASYITGQVIPVNGG 243 (246)
T ss_pred H-HH-hcCC----CCCCcCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 1 11 1222 134677899999999987542 234678888764
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=136.79 Aligned_cols=220 Identities=14% Similarity=0.117 Sum_probs=141.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.++++.|+++ +.+|+...|..+... .+.+.+.+.. ...++.++.+|++.+
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~-G~~V~i~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~Dl~~~---- 118 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFARE-GADIALNYLPEEEQD-AAEVVQLIQA---------EGRKAVALPGDLKDE---- 118 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHc-CCEEEEEeCCcchHH-HHHHHHHHHH---------cCCeEEEEecCCCCH----
Confidence 4679999999999999999999976 456665544332211 1222222221 124677889998753
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc--------cChHHHHhhhHHHHHHHHHhhccC--CCccEEEEecccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI--------LPYNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDSI 460 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~--------~~~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~v 460 (958)
+....+. ..+|+|||||+..... ..++..+++|+.|+.++++.+... +..+++++||.+.
T Consensus 119 ---~~v~~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~ 195 (300)
T PRK06128 119 ---AFCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQS 195 (300)
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccc
Confidence 3333332 3689999999964221 124456789999999999887532 2258999999877
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
|... .....|+.||...+.+++..+ .+|+++.+++||.|.++.........+.. .
T Consensus 196 ~~~~-----------------~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~----~ 254 (300)
T PRK06128 196 YQPS-----------------PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKI----P 254 (300)
T ss_pred cCCC-----------------CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHH----H
Confidence 6421 112369999999999987643 35999999999999887532211111111 1
Q ss_pred HHHHhC-CcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC
Q psy4557 537 AITRLG-YAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN 583 (958)
Q Consensus 537 ~~~~~g-~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~ 583 (958)
.++ ..|- ..+...+.++.+++.++.... -.+++|++....
T Consensus 255 ---~~~~~~p~----~r~~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg~ 297 (300)
T PRK06128 255 ---DFGSETPM----KRPGQPVEMAPLYVLLASQESSYVTGEVFGVTGGL 297 (300)
T ss_pred ---HHhcCCCC----CCCcCHHHHHHHHHHHhCccccCccCcEEeeCCCE
Confidence 111 1221 234567888999988875432 246788887654
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.8e-13 Score=162.20 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=91.0
Q ss_pred hCCCCeEEEeCC----CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEecCCCCCCH
Q psy4557 25 RTPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPP 100 (958)
Q Consensus 25 ~~pd~~Al~~~~----~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vPln~~~~~ 100 (958)
.+|+++|+++.+ .+++||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|++++|+++.+++
T Consensus 96 ~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~ 175 (655)
T PRK03584 96 RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGV 175 (655)
T ss_pred CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCH
Confidence 479999998632 2579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCeEEEEcccc
Q psy4557 101 ALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 101 ~~l~~il~~~~~~~vi~~~~~ 121 (958)
+++.+++++++|+++|+++.+
T Consensus 176 ~~l~~~l~~~~~~~li~~~~~ 196 (655)
T PRK03584 176 QGVLDRFGQIEPKVLIAVDGY 196 (655)
T ss_pred HHHHHHHHHcCCcEEEEcccc
Confidence 999999999999999998754
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-11 Score=139.15 Aligned_cols=209 Identities=11% Similarity=0.093 Sum_probs=141.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC------CCcEEEEEecCCCHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA------PGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~------~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
..++|+++||||+|+||..++++|+++|++|+++.|+.+..+.+. .+... ...+.++.+|+++.+++.++++.
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~-~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~ 128 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLR-EMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG 128 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence 357899999999999999999999999999999889877665553 22111 12467788999999988777652
Q ss_pred HHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-------CC
Q psy4557 787 VLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-------RP 859 (958)
Q Consensus 787 ~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-------~~ 859 (958)
+|.++|.|+......... .++...++|+.|+..+++++.. ..+-.++|++||.++. ..
T Consensus 129 -------~d~V~hlA~~~~~~~~~~----~~~~~~~~nv~gt~~llea~~~----~~~v~r~V~~SS~~~~vyg~~~~~~ 193 (367)
T PLN02686 129 -------CAGVFHTSAFVDPAGLSG----YTKSMAELEAKASENVIEACVR----TESVRKCVFTSSLLACVWRQNYPHD 193 (367)
T ss_pred -------ccEEEecCeeeccccccc----ccchhhhhhHHHHHHHHHHHHh----cCCccEEEEeccHHHhcccccCCCC
Confidence 578888887653221111 1134567888888888776532 1123489999996411 00
Q ss_pred CC----------------CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhh----hcc-
Q psy4557 860 FA----------------GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDK----YDI- 918 (958)
Q Consensus 860 ~~----------------~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~----~~~- 918 (958)
.+ ....|+.||.+.+.+++.++.+ +|++++++.|+.|..|............. ...
T Consensus 194 ~~~~i~E~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gl~~v~lRp~~vyGp~~~~~~~~~~~~~~~g~~~~~ 270 (367)
T PLN02686 194 LPPVIDEESWSDESFCRDNKLWYALGKLKAEKAAWRAARG---KGLKLATICPALVTGPGFFRRNSTATIAYLKGAQEML 270 (367)
T ss_pred CCcccCCCCCCChhhcccccchHHHHHHHHHHHHHHHHHh---cCceEEEEcCCceECCCCCCCCChhHHHHhcCCCccC
Confidence 00 1246999999999999887765 58999999999999985322111001000 000
Q ss_pred -ccCCCCCCHHHHHHHHHHHhcC
Q psy4557 919 -SKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 919 -~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
.....+...+|++++++.++..
T Consensus 271 g~g~~~~v~V~Dva~A~~~al~~ 293 (367)
T PLN02686 271 ADGLLATADVERLAEAHVCVYEA 293 (367)
T ss_pred CCCCcCeEEHHHHHHHHHHHHhc
Confidence 0112357789999999987764
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=158.23 Aligned_cols=110 Identities=15% Similarity=0.291 Sum_probs=102.6
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
.++.++|.++++++|+++|+.. .++.+||+||.++++++|++|.+. |+++||+|+++++|++++++++|||+++|+++
T Consensus 24 ~~~~~~l~~~~~~~p~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 102 (562)
T PRK12492 24 KSVVEVFERSCKKFADRPAFSN-LGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIV 102 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEec-CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 3688999999999999999975 467899999999999999999985 99999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
+|+|+.++.+++.+++++++++++|+++.+.+
T Consensus 103 v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~ 134 (562)
T PRK12492 103 VNTNPLYTAREMRHQFKDSGARALVYLNMFGK 134 (562)
T ss_pred eccCccCCHHHHHHHHhccCceEEEeccccch
Confidence 99999999999999999999999999875543
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=156.94 Aligned_cols=108 Identities=21% Similarity=0.492 Sum_probs=103.1
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.++|.+.++.+|+++|+++ +++++||+||.++++++|++|.+.|+++||+|+++++|+.++++++|||+++|++++
T Consensus 10 ~~l~~~l~~~a~~~p~~~a~~~-~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v 88 (540)
T PRK06164 10 DTLASLLDAHARARPDAVALID-EDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVI 88 (540)
T ss_pred CCHHHHHHHHHHhCCCCeEEec-CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEE
Confidence 4689999999999999999985 567899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
|+|+.++.+++.+++++++++++|++.++
T Consensus 89 ~l~~~~~~~~l~~~i~~~~~~~ii~~~~~ 117 (540)
T PRK06164 89 AVNTRYRSHEVAHILGRGRARWLVVWPGF 117 (540)
T ss_pred ecCCCCCcHHHHHHHHhcCccEEEEcccc
Confidence 99999999999999999999999998765
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=155.12 Aligned_cols=114 Identities=27% Similarity=0.410 Sum_probs=106.8
Q ss_pred ccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 11 ~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
...++.++|.++++.+|+++|+.+. ++.+||+||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|++
T Consensus 4 ~~~~l~~~l~~~~~~~p~~~a~~~~-~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~ 82 (521)
T PRK06187 4 YPLTIGRILRHGARKHPDKEAVYFD-GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAV 82 (521)
T ss_pred ccCCHHHHHHHHHHHCCCceEEEeC-CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence 3467999999999999999999864 567999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
++|+|+.++.+++.++++.+++++++++.++.+.+
T Consensus 83 ~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~ 117 (521)
T PRK06187 83 LHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLL 117 (521)
T ss_pred EEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHH
Confidence 99999999999999999999999999998766544
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=157.78 Aligned_cols=110 Identities=25% Similarity=0.353 Sum_probs=104.0
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.++|.+.+..+|+++|+++ +++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 24 ~~~~~~~~~~a~~~p~~~a~~~-~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 102 (563)
T PRK06710 24 QPLHKYVEQMASRYPEKKALHF-LGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVV 102 (563)
T ss_pred ccHHHHHHHHHHHCCCceEEEe-cCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEe
Confidence 4689999999999999999986 467899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
|+||+++.+++.++++.++++++++++.+.+
T Consensus 103 pi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~ 133 (563)
T PRK06710 103 QTNPLYTERELEYQLHDSGAKVILCLDLVFP 133 (563)
T ss_pred ccCcccCHHHHHHHHhccCCeEEEEeccchh
Confidence 9999999999999999999999999876543
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=154.52 Aligned_cols=111 Identities=27% Similarity=0.384 Sum_probs=103.5
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.+++.+++ .+|+++|+.+.+++.+||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|+++|
T Consensus 3 ~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v 81 (504)
T PRK07514 3 NNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFL 81 (504)
T ss_pred ccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEE
Confidence 45888888888 99999999865677899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
|+++.++.+++.+++++++++++|+++...+.
T Consensus 82 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~ 113 (504)
T PRK07514 82 PLNTAYTLAELDYFIGDAEPALVVCDPANFAW 113 (504)
T ss_pred ECCCCCCHHHHHHHHHhCCCcEEEEccchhHH
Confidence 99999999999999999999999998765543
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=156.54 Aligned_cols=112 Identities=20% Similarity=0.220 Sum_probs=104.9
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.+..+.|++.++.+|+++|+.+ ++..+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~-~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v 96 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIH-GDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLN 96 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEE-CCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEe
Confidence 4577889999999999999986 457899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|+|++++.+++.++++++++++++++.++.+.+
T Consensus 97 pl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 129 (545)
T PRK08162 97 TLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVA 129 (545)
T ss_pred ccccccChHHHHHHHHhCCCeEEEEccchhhHH
Confidence 999999999999999999999999998776544
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=134.05 Aligned_cols=228 Identities=13% Similarity=0.131 Sum_probs=148.8
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+++|||||||+||..+++.|+++ +.+|+++.|.... .+.+.+.+ ...++.++.+|+..
T Consensus 3 k~ilItGat~~iG~~la~~L~~~-g~~v~~~~r~~~~---~~~~~~~~-----------~~~~~~~~~~D~~~------- 60 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAA-GDRVLALDIDAAA---LAAFADAL-----------GDARFVPVACDLTD------- 60 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHC-CCEEEEEeCCHHH---HHHHHHHh-----------cCCceEEEEecCCC-------
Confidence 57999999999999999999876 4688888885321 11221111 02467888999874
Q ss_pred HHHHHHHhc-------ccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccccc
Q psy4557 400 QDEYVSLSY-------EIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSIY 461 (958)
Q Consensus 400 ~~~~~~l~~-------~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v~ 461 (958)
.+....+.. .+|+|||+|+..... .+ +.....+|+.|+.++++.+. +.+..+|+|+||...+
T Consensus 61 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~ 140 (257)
T PRK07074 61 AASLAAALANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGM 140 (257)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhc
Confidence 344433332 589999999864321 11 23345689999999987763 3344679999985432
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA 537 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~ 537 (958)
... ....|+.||+..|.+++... ..|+++.++|||.+.++......... ..+...
T Consensus 141 ~~~------------------~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~---~~~~~~ 199 (257)
T PRK07074 141 AAL------------------GHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAAN---PQVFEE 199 (257)
T ss_pred CCC------------------CCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccC---hHHHHH
Confidence 100 01269999999999887643 34899999999999876422111111 111111
Q ss_pred HHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 538 ITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 538 ~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
... ..| ..+|+.+|+++++++.++... ...+.++++......+..|+++.+..
T Consensus 200 ~~~--~~~----~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 200 LKK--WYP----LQDFATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred HHh--cCC----CCCCCCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 111 112 246799999999999998542 22467888887777888898877643
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=157.58 Aligned_cols=110 Identities=23% Similarity=0.181 Sum_probs=100.6
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGC-IVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv-~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
.++.++|.+++ .|+++|+++ .+..+||+||.++++++|++|.+.|+ ++||+|+++++|+++++++++||+++|+++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~-~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~ 79 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRY-GDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVL 79 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEE-CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEE
Confidence 35778887654 799999987 46789999999999999999999999 899999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|||||.++.+++.+++++++++++|++.+..+.+
T Consensus 80 v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 113 (540)
T PRK13388 80 VGLNTTRRGAALAADIRRADCQLLVTDAEHRPLL 113 (540)
T ss_pred EEecccCChHHHHHHHHhcCCCEEEEChhhhHHH
Confidence 9999999999999999999999999987665443
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=156.85 Aligned_cols=113 Identities=27% Similarity=0.398 Sum_probs=105.6
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
..++.+.|.+.+.++|+++|+++ .++++||+||.++++++|+.|.+. |+++||+|+++++|+++++++++||+++|++
T Consensus 9 ~~tl~~~l~~~a~~~~~~~a~~~-~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 87 (546)
T PRK08314 9 ETSLFHNLEVSARRYPDKTAIVF-YGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAV 87 (546)
T ss_pred CCCHHHHHHHHHHHcCCCcceee-cCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcE
Confidence 34689999999999999999986 467899999999999999999999 9999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
++|+||.++.+++.+++++++++++|++.+..+.+
T Consensus 88 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 122 (546)
T PRK08314 88 VVPVNPMNREEELAHYVTDSGARVAIVGSELAPKV 122 (546)
T ss_pred EeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhH
Confidence 99999999999999999999999999988765544
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=155.06 Aligned_cols=111 Identities=22% Similarity=0.303 Sum_probs=104.6
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.+.|++.+..+|+++|+.+ +++++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 5 ~~i~~~l~~~~~~~~~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v 83 (513)
T PRK07656 5 MTLPELLARAARRFGDKEAYVF-GDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVV 83 (513)
T ss_pred ccHHHHHHHHHHHCCCCeEEEe-CCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEE
Confidence 4688999999999999999987 567899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
|+|+.++.+++.+++++++++++++++.+...
T Consensus 84 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~ 115 (513)
T PRK07656 84 PLNTRYTADEAAYILARGDAKALFVLGLFLGV 115 (513)
T ss_pred ecCcccCHHHHHHHHhhcCceEEEEchhhHHH
Confidence 99999999999999999999999998765543
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=157.32 Aligned_cols=111 Identities=22% Similarity=0.413 Sum_probs=104.6
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.++|.+.++++|+++|+++ .++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 23 ~~i~~~l~~~a~~~p~~~a~~~-~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 101 (557)
T PRK07059 23 PSLADLLEESFRQYADRPAFIC-MGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVV 101 (557)
T ss_pred CCHHHHHHHHHHHcCCCceEEE-cCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEe
Confidence 4689999999999999999986 457899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
|++|.++.+++.+++++++++++|+++.+.+.
T Consensus 102 ~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 133 (557)
T PRK07059 102 NVNPLYTPRELEHQLKDSGAEAIVVLENFATT 133 (557)
T ss_pred ccCcccCHHHHHHHHHccCceEEEEchhhHHH
Confidence 99999999999999999999999998776543
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=159.39 Aligned_cols=111 Identities=26% Similarity=0.377 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHhCCCCeEEEeCC--------CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHH
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDHD--------GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH 85 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~~--------~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~ 85 (958)
++.++|++++..+|+++|+++.+ .+++||+||.++++++|++|.+.| ++||+|+++++|++++++++|||+
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 46788999999999999998521 268999999999999999999999 689999999999999999999999
Q ss_pred HHCCeEecCCC---CCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 86 KAGGGYLPLET---SYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 86 k~G~v~vPln~---~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
++|+++||+|+ .++.+++.++|++++++++++++++.+.+
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~ 123 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDV 123 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHH
Confidence 99999999997 56899999999999999999987765443
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.4e-12 Score=132.29 Aligned_cols=201 Identities=15% Similarity=0.154 Sum_probs=130.3
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++||||||||+||.+++++|+++ .+|+++.|.... .+.+.+. ...+.++.+|+++
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r~~~~---~~~~~~~-------------~~~~~~~~~D~~~------- 58 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT--HTLLLGGRPAER---LDELAAE-------------LPGATPFPVDLTD------- 58 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh--CCEEEEeCCHHH---HHHHHHH-------------hccceEEecCCCC-------
Confidence 57999999999999999999977 789999986321 1112110 1246778899874
Q ss_pred HHHHHHHhc---ccCEEEEcccccCcc----c---ChHHHHhhhHHHHHH----HHHhhccCCCccEEEEecccccCCCC
Q psy4557 400 QDEYVSLSY---EIDMIIHAAAFVNLI----L---PYNALYKSNVLATKN----LIEFSFLNKIKSFHYVSTDSIYPSTS 465 (958)
Q Consensus 400 ~~~~~~l~~---~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~----ll~~a~~~~~k~~~~vST~~v~~~~~ 465 (958)
.+....+.. .+|.|||+|+..... . .+.....+|+.+..+ +++.+... .++++++||...++..
T Consensus 59 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~~- 136 (227)
T PRK08219 59 PEAIAAAVEQLGRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGHVVFINSGAGLRAN- 136 (227)
T ss_pred HHHHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEcchHhcCcC-
Confidence 345555554 599999999975421 1 134456788998544 44444444 3689999987665321
Q ss_pred CCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhh--CC-CCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhC
Q psy4557 466 ENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ--MG-LPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLG 542 (958)
Q Consensus 466 ~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~--~g-lp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g 542 (958)
.....|+.+|...|.+++..+. .+ +++..++||.+.++... .+... .+
T Consensus 137 ----------------~~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~----------~~~~~---~~ 187 (227)
T PRK08219 137 ----------------PGWGSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQR----------GLVAQ---EG 187 (227)
T ss_pred ----------------CCCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhh----------hhhhh---hc
Confidence 1134799999999988876432 35 88888899876543210 00000 01
Q ss_pred CcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEec
Q psy4557 543 YAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFI 580 (958)
Q Consensus 543 ~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~ 580 (958)
. .. ....++.+++++++++.+...+. .+.+|++.
T Consensus 188 ~--~~-~~~~~~~~~dva~~~~~~l~~~~-~~~~~~~~ 221 (227)
T PRK08219 188 G--EY-DPERYLRPETVAKAVRFAVDAPP-DAHITEVV 221 (227)
T ss_pred c--cc-CCCCCCCHHHHHHHHHHHHcCCC-CCccceEE
Confidence 0 00 12357899999999999876543 35667664
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=156.12 Aligned_cols=109 Identities=24% Similarity=0.395 Sum_probs=102.6
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeC-CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~-~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
.+++++|.+.++++|+++|+++. .++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~ 97 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAIL 97 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEE
Confidence 57999999999999999999763 34689999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+|+++.++.+++.+++++++++++|+++..
T Consensus 98 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~ 127 (558)
T PRK12583 98 VNINPAYRASELEYALGQSGVRWVICADAF 127 (558)
T ss_pred EecCCCCCHHHHHHHHHhcCCcEEEEeccc
Confidence 999999999999999999999999997643
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6e-12 Score=135.17 Aligned_cols=212 Identities=14% Similarity=0.097 Sum_probs=139.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++++||||+|++|.++++.|++++ .+|+++.|.... .+.+.+ . ....++.+|++.+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g-~~V~~~~r~~~~---~~~~~~---~-----------~~~~~~~~D~~~~---- 65 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRG-ARVVAAARNAAA---LDRLAG---E-----------TGCEPLRLDVGDD---- 65 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCC-CEEEEEeCCHHH---HHHHHH---H-----------hCCeEEEecCCCH----
Confidence 45789999999999999999998764 689998885321 111111 0 1234667888743
Q ss_pred CcHHHHHHHh---cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccC-----CCccEEEEecccccC
Q psy4557 398 KNQDEYVSLS---YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLN-----KIKSFHYVSTDSIYP 462 (958)
Q Consensus 398 ~~~~~~~~l~---~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~-----~~k~~~~vST~~v~~ 462 (958)
+....+. ..+|+|||+|+..... ..++.....|+.|+.++++.+... ...+|+++||.+.+.
T Consensus 66 ---~~v~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~ 142 (245)
T PRK07060 66 ---AAIRAALAAAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALV 142 (245)
T ss_pred ---HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcC
Confidence 2223332 3589999999975321 124456678999999998876531 135899999876543
Q ss_pred CCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHH
Q psy4557 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI 538 (958)
Q Consensus 463 ~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~ 538 (958)
.. .....|+.||...|.+++..+ ..|++++.+|||.+.++.....|........
T Consensus 143 ~~-----------------~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~----- 200 (245)
T PRK07060 143 GL-----------------PDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGP----- 200 (245)
T ss_pred CC-----------------CCCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHH-----
Confidence 21 112469999999999987653 2489999999999988764433432211111
Q ss_pred HHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 539 TRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 539 ~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
.. ...| ...++++++++++++.++..+. ..+.++++..
T Consensus 201 ~~-~~~~----~~~~~~~~d~a~~~~~l~~~~~~~~~G~~~~~~~ 240 (245)
T PRK07060 201 ML-AAIP----LGRFAEVDDVAAPILFLLSDAASMVSGVSLPVDG 240 (245)
T ss_pred HH-hcCC----CCCCCCHHHHHHHHHHHcCcccCCccCcEEeECC
Confidence 11 1123 2347899999999999886542 2366676654
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=158.66 Aligned_cols=112 Identities=25% Similarity=0.363 Sum_probs=100.6
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCC------C--ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHD------G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA 83 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~------~--~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la 83 (958)
..++.+++.++++++|+++|+++.+ + +.+||+||.++++++|++|++. +++||+|+++++|++++++++||
T Consensus 33 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA 111 (612)
T PRK12476 33 GTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFA 111 (612)
T ss_pred cCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHH
Confidence 3578899999999999999997521 1 3799999999999999999986 99999999999999999999999
Q ss_pred HHHHCCeEecC-CCCCC--HHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 84 IHKAGGGYLPL-ETSYP--PALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 84 ~~k~G~v~vPl-n~~~~--~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
|+++|+++||+ ++.++ .+++.+++++++++++|+++.+.+.
T Consensus 112 ~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 155 (612)
T PRK12476 112 AIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEA 155 (612)
T ss_pred HHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHH
Confidence 99999999999 68887 8999999999999999998765543
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=156.19 Aligned_cols=110 Identities=24% Similarity=0.395 Sum_probs=103.2
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeC-CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~-~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
+.++.++|.+.++++|+++|+++. +++.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 15 ~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~ 94 (559)
T PRK08315 15 EQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAI 94 (559)
T ss_pred hccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeE
Confidence 346899999999999999999763 3467999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
++|+||.++.+++.+++++++++++|++..+
T Consensus 95 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~ 125 (559)
T PRK08315 95 LVTINPAYRLSELEYALNQSGCKALIAADGF 125 (559)
T ss_pred EEecCccCCHHHHHHHHHhcCCCEEEEeccc
Confidence 9999999999999999999999999998754
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=155.60 Aligned_cols=112 Identities=14% Similarity=0.198 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeC---CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCC
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDH---DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~---~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~ 89 (958)
.++.++|+..+..+|+++++.+. +.+.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~ 89 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA 89 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 46889999999999999888641 225799999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 90 v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
++||+||+++++++.++++++++++++++.++.+.
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 124 (539)
T PRK07008 90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPL 124 (539)
T ss_pred EEeecccccCHHHHHHHHhccCCcEEEEcchhHHH
Confidence 99999999999999999999999999998876543
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-12 Score=138.00 Aligned_cols=232 Identities=12% Similarity=0.062 Sum_probs=139.9
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++++|||||+|+||++++++|++++ .+|+...|... ..+++.+.+.. ...++.++..|++++
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G-~~Vv~~~r~~~---~l~~~~~~l~~---------~~~~~~~~~~Dv~d~---- 67 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRG-ARVVLGDVDKP---GLRQAVNHLRA---------EGFDVHGVMCDVRHR---- 67 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHH---HHHHHHHHHHh---------cCCeEEEEeCCCCCH----
Confidence 45789999999999999999998764 67777766532 12222222211 123677888898753
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCC-CccEEEEecc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNK-IKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~-~k~~~~vST~ 458 (958)
++...+. ..+|+|||+|+..... .+ ++....+|+.|+.++++.+. ..+ ..+++++||.
T Consensus 68 ---~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~ 144 (275)
T PRK05876 68 ---EEVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASF 144 (275)
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCh
Confidence 4444433 3589999999975321 12 33456899999999988764 222 3579999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHH----HHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIV----SEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~----aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
..+.+. .....|+.||.. +|.+..+...+|+++++++||.+.++...............
T Consensus 145 ~~~~~~-----------------~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~ 207 (275)
T PRK05876 145 AGLVPN-----------------AGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRGAACAQ 207 (275)
T ss_pred hhccCC-----------------CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhhcCccccc
Confidence 654311 123579999997 55555444456999999999998765422110000000000
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHH
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLN 595 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~ 595 (958)
.. ............++++++++|+.++...... +.|-+. ++..+..+.+...
T Consensus 208 ~~---~~~~~~~~~~~~~~~~~~dva~~~~~ai~~~----~~~~~~--~~~~~~~~~~~~~ 259 (275)
T PRK05876 208 SS---TTGSPGPLPLQDDNLGVDDIAQLTADAILAN----RLYVLP--HAASRASIRRRFE 259 (275)
T ss_pred cc---cccccccccccccCCCHHHHHHHHHHHHHcC----CeEEec--ChhhHHHHHHHHH
Confidence 00 0001111222356889999999999887543 344443 3445555544443
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=156.34 Aligned_cols=111 Identities=21% Similarity=0.400 Sum_probs=103.6
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
.++.++|.+.++++|+++|+++ .++.+||+||.++++++|+.|. ..|+++||+|+++++|++++++++|||+++|+++
T Consensus 25 ~~~~~~l~~~~~~~~~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 103 (560)
T PRK08751 25 RTVAEVFATSVAKFADRPAYHS-FGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV 103 (560)
T ss_pred CcHHHHHHHHHHhCCCCceEEE-CCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 3588999999999999999986 4678999999999999999997 6899999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
+|+||.++.+++.+++++++++++|+++.+...
T Consensus 104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~ 136 (560)
T PRK08751 104 VNVNPLYTPRELKHQLIDSGASVLVVIDNFGTT 136 (560)
T ss_pred eccCccCCHHHHHHHHHhcCCeEEEEcchhHHH
Confidence 999999999999999999999999998766543
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-11 Score=132.43 Aligned_cols=213 Identities=14% Similarity=0.152 Sum_probs=139.5
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.+++|||||+|+||++++++|+++ +.+|+++.|.. + . ....++.++.+|++.
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~-G~~v~~~~~~~--------~----~---------~~~~~~~~~~~D~~~----- 59 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEA-GAKVIGFDQAF--------L----T---------QEDYPFATFVLDVSD----- 59 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecch--------h----h---------hcCCceEEEEecCCC-----
Confidence 4578999999999999999999876 46888887753 0 0 113467888999874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~ 459 (958)
.+....+. ..+|+|||||+..... ..+.....+|+.|+.++++.+.. .+..+++++||..
T Consensus 60 --~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~ 137 (252)
T PRK08220 60 --AAAVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNA 137 (252)
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCch
Confidence 34444443 3489999999975431 12445678999999999987642 3335799999865
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
...+. .....|+.||...|.+++... ..|++++++|||.+.++.....+.........+
T Consensus 138 ~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~ 200 (252)
T PRK08220 138 AHVPR-----------------IGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVI 200 (252)
T ss_pred hccCC-----------------CCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhh
Confidence 42110 123579999999999886643 369999999999999876433332211111111
Q ss_pred HH---HHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecC
Q psy4557 536 KA---ITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFIN 581 (958)
Q Consensus 536 ~~---~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n 581 (958)
.. ....+ .| ...+..++++|++++.++... .-.+.+..+.+
T Consensus 201 ~~~~~~~~~~-~~----~~~~~~~~dva~~~~~l~~~~~~~~~g~~i~~~g 246 (252)
T PRK08220 201 AGFPEQFKLG-IP----LGKIARPQEIANAVLFLASDLASHITLQDIVVDG 246 (252)
T ss_pred hhHHHHHhhc-CC----CcccCCHHHHHHHHHHHhcchhcCccCcEEEECC
Confidence 11 11111 12 235688999999999988643 22345555543
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=138.17 Aligned_cols=199 Identities=16% Similarity=0.209 Sum_probs=139.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
++++||||+|+||..+++.|+++|++|++++|+.+....+ . ...+..+.+|+++.+++.++++ .+|+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~--~~~~~~~~~D~~~~~~l~~~~~-------~~d~ 67 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL----E--GLDVEIVEGDLRDPASLRKAVA-------GCRA 67 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccc----c--cCCceEEEeeCCCHHHHHHHHh-------CCCE
Confidence 3689999999999999999999999999999987654322 1 1246788999999988776654 5799
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC---------------
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA--------------- 861 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~--------------- 861 (958)
+||+|+.... ..+.++..+++|+.|+..+++++.. .+.+++|++||.......+
T Consensus 68 vi~~a~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~ 136 (328)
T TIGR03466 68 LFHVAADYRL------WAPDPEEMYAANVEGTRNLLRAALE-----AGVERVVYTSSVATLGVRGDGTPADETTPSSLDD 136 (328)
T ss_pred EEEeceeccc------CCCCHHHHHHHHHHHHHHHHHHHHH-----hCCCeEEEEechhhcCcCCCCCCcCccCCCCccc
Confidence 9999986421 1123567899999999988887643 2246999999976543211
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh-hhhhhh---c----cccCCCCCCHHHHHHH
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR-DVVDKY---D----ISKAVPVLTTKEISQS 933 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~-~~~~~~---~----~~~~~~~~~p~~ia~~ 933 (958)
....|+.+|.+.+.+.+.++.+ .|+++..+.|+.+..+........ ...... . ......++..+|+|++
T Consensus 137 ~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a 213 (328)
T TIGR03466 137 MIGHYKRSKFLAEQAALEMAAE---KGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMPAYVDTGLNLVHVDDVAEG 213 (328)
T ss_pred ccChHHHHHHHHHHHHHHHHHh---cCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCceeeCCCcceEEHHHHHHH
Confidence 1347999999999999887765 489999999998865532111110 000000 0 0111235678999999
Q ss_pred HHHHhcCCC
Q psy4557 934 IIFALLQPS 942 (958)
Q Consensus 934 i~~~l~~~~ 942 (958)
++.++..+.
T Consensus 214 ~~~~~~~~~ 222 (328)
T TIGR03466 214 HLLALERGR 222 (328)
T ss_pred HHHHHhCCC
Confidence 998776543
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-12 Score=156.11 Aligned_cols=109 Identities=18% Similarity=0.342 Sum_probs=97.6
Q ss_pred HHHHHHHHHhCCCCeEEEeCC-CceeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEec
Q psy4557 16 HYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (958)
Q Consensus 16 ~~~~~~~a~~~pd~~Al~~~~-~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vP 93 (958)
..+|.+ +.+|+++|+++.. +.++||+||.++++++|++|++ .|+++||+|+|+++|++++++++|||+++|++++|
T Consensus 44 ~~l~~~--~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~ 121 (560)
T PLN02574 44 SFIFSH--HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTT 121 (560)
T ss_pred HHHhcC--cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeC
Confidence 344544 5789999998743 3379999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEcccchhhhh
Q psy4557 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126 (958)
Q Consensus 94 ln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 126 (958)
+||.++.+++.++++++++++++++.+..+.+.
T Consensus 122 l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 154 (560)
T PLN02574 122 MNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLS 154 (560)
T ss_pred cCcccCHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 999999999999999999999999887655443
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=154.55 Aligned_cols=101 Identities=18% Similarity=0.312 Sum_probs=94.7
Q ss_pred HHHHhCCCCeEEEeC-CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEecCCCCCC
Q psy4557 21 NQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99 (958)
Q Consensus 21 ~~a~~~pd~~Al~~~-~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vPln~~~~ 99 (958)
.+|+++|+++|+++. +++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++++|+|+.++
T Consensus 5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~ 84 (501)
T PRK13390 5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT 84 (501)
T ss_pred hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence 467789999999863 3578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEcccc
Q psy4557 100 PALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 100 ~~~l~~il~~~~~~~vi~~~~~ 121 (958)
++++.+++++++++++++++..
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~~ 106 (501)
T PRK13390 85 APEADYIVGDSGARVLVASAAL 106 (501)
T ss_pred HHHHHHHHHhcCCcEEEEcchh
Confidence 9999999999999999997654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=131.46 Aligned_cols=218 Identities=12% Similarity=0.058 Sum_probs=139.5
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||||+||.+++++|+++ +.+|+.+.|..... +.+.+.+. . ..++.++.+|++.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~-G~~V~~~~r~~~~~---~~~~~~~~---------~-~~~~~~~~~D~~~----- 64 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAE-GARVVVTDRNEEAA---ERVAAEIL---------A-GGRAIAVAADVSD----- 64 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHH---HHHHHHHh---------c-CCeEEEEECCCCC-----
Confidence 3568999999999999999999976 46788888864321 11111110 0 2467888999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCccc--------ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLIL--------PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~~--------~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
.+....+.. .+|+|||+|+...... .++....+|+.|+.++++.+. +.+.++|+++||.
T Consensus 65 --~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 142 (251)
T PRK07231 65 --EADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVAST 142 (251)
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCh
Confidence 345554433 5799999998643222 234567889999888776654 3455789999998
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.+.+. .....|+.||...+.+++... ..|++++.+|||.+..+...+..... ....
T Consensus 143 ~~~~~~-----------------~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~--~~~~ 203 (251)
T PRK07231 143 AGLRPR-----------------PGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEP--TPEN 203 (251)
T ss_pred hhcCCC-----------------CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhccc--ChHH
Confidence 765421 123479999999998886543 34899999999999655432221110 0011
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
..... ...| ...+..++++|++++.+..... -.+..+++..
T Consensus 204 ~~~~~--~~~~----~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~g 246 (251)
T PRK07231 204 RAKFL--ATIP----LGRLGTPEDIANAALFLASDEASWITGVTLVVDG 246 (251)
T ss_pred HHHHh--cCCC----CCCCcCHHHHHHHHHHHhCccccCCCCCeEEECC
Confidence 11111 1122 2346789999999999886432 2355666654
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-12 Score=158.11 Aligned_cols=112 Identities=28% Similarity=0.369 Sum_probs=100.1
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCC--------CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHD--------GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA 83 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~--------~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la 83 (958)
..++.++|+++++.+|+++|+++.+ .+.+||+||.++++++|++|++. +++||+|+++++|++++++++||
T Consensus 20 ~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA 98 (631)
T PRK07769 20 NTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFG 98 (631)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHH
Confidence 4578999999999999999997521 14799999999999999999987 89999999999999999999999
Q ss_pred HHHHCCeEecC-CCCCC--HHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 84 IHKAGGGYLPL-ETSYP--PALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 84 ~~k~G~v~vPl-n~~~~--~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
|+++|+++||+ ++..+ .+++.+++++++++++|+++++.+.
T Consensus 99 ~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 142 (631)
T PRK07769 99 ALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEG 142 (631)
T ss_pred HHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHH
Confidence 99999999999 66775 7899999999999999998765443
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=156.76 Aligned_cols=111 Identities=23% Similarity=0.290 Sum_probs=100.4
Q ss_pred cHHHHHHHHHH-hCCCCeEEEeCC---CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCC
Q psy4557 14 ALHYMFRNQAK-RTPDKIAVVDHD---GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (958)
Q Consensus 14 ~l~~~~~~~a~-~~pd~~Al~~~~---~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~ 89 (958)
.+.+.++++++ .+|+++|+++.+ .+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 44 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~ 123 (570)
T PRK04319 44 IAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGA 123 (570)
T ss_pred HHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 35677888876 479999997632 35899999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 90 v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
++||+|+.++++++.+++++++++++|++..+...
T Consensus 124 v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~ 158 (570)
T PRK04319 124 IVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLER 158 (570)
T ss_pred EEcccccccCHHHHHHHHHccCCcEEEEChhhhhc
Confidence 99999999999999999999999999998765443
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-12 Score=151.90 Aligned_cols=110 Identities=21% Similarity=0.358 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEec
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vP 93 (958)
++.+.|+++++++|+++|+++ .++.+||.||.++++++|++|.+.|. +|++|+|+++|++++++++|||+++|++++|
T Consensus 2 ~~~~~~~~~a~~~p~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 79 (487)
T PRK07638 2 GITKEYKKHASLQPNKIAIKE-NDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVP 79 (487)
T ss_pred ChHHHHHHHHHhCCCCeEEec-CCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence 467889999999999999986 46789999999999999999999984 8999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 94 ln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+|+.++.+++.++++.++++++|++......+
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 111 (487)
T PRK07638 80 LDIKWKQDELKERLAISNADMIVTERYKLNDL 111 (487)
T ss_pred cCccCCHHHHHHHHHhCCCCEEEEecccccch
Confidence 99999999999999999999999987654433
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=154.96 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=101.7
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
..++.++|.+.+. |+++|+++ +++.+||+||.++++++|++|+++ |+++|++|+++++|+++++++++||+++|++
T Consensus 4 ~~~~~~~l~~~a~--~~~~a~~~-~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~ 80 (529)
T PRK07867 4 APTVAELLLPLAE--DDDRGLYF-EDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIV 80 (529)
T ss_pred cccHHHHHHHhcc--cCCceEEE-CCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 4468888887774 89999986 568999999999999999999997 8999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+||+|+.++.+++.+++++++++++|+++++.+.+
T Consensus 81 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 115 (529)
T PRK07867 81 PVGLNPTRRGAALARDIAHADCQLVLTESAHAELL 115 (529)
T ss_pred EEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHH
Confidence 99999999999999999999999999998766543
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-11 Score=127.49 Aligned_cols=215 Identities=12% Similarity=0.109 Sum_probs=137.4
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||||++|.++++.|+++ +.+|+.+.|..... .+.+.+.+. ....++.++.+|++.+
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~-G~~v~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~Dl~~~----- 67 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQ-GANVVINYASSEAG--AEALVAEIG---------ALGGKALAVQGDVSDA----- 67 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCchhH--HHHHHHHHH---------hcCCceEEEEcCCCCH-----
Confidence 468999999999999999999976 56787777754321 112222111 1135788889998752
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEeccc-
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDS- 459 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~- 459 (958)
+....+. ..+|+|||+|+..... . .++....+|+.|+.++++.+.. .+.++|+|+||..
T Consensus 68 --~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~ 145 (248)
T PRK05557 68 --ESVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVG 145 (248)
T ss_pred --HHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEccccc
Confidence 3333332 3689999999875321 1 2334566899999999887653 3456799999853
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
+++. .....|+.||...|.+++... ..|++++++|||.+.++..... ...+.
T Consensus 146 ~~~~------------------~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~------~~~~~ 201 (248)
T PRK05557 146 LMGN------------------PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDAL------PEDVK 201 (248)
T ss_pred CcCC------------------CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccccc------ChHHH
Confidence 3331 113469999999998886532 3589999999998754432111 11122
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcC--cCCCCceEEecCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTN--VNNANKIYNFINT 582 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~--~~~~~~v~h~~n~ 582 (958)
+.... ..| .-.+..++.+++++..+... ....+++|++.+.
T Consensus 202 ~~~~~--~~~----~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~~ 244 (248)
T PRK05557 202 EAILA--QIP----LGRLGQPEEIASAVAFLASDEAAYITGQTLHVNGG 244 (248)
T ss_pred HHHHh--cCC----CCCCcCHHHHHHHHHHHcCcccCCccccEEEecCC
Confidence 22221 112 12356889999999887754 2335678888753
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=132.90 Aligned_cols=217 Identities=13% Similarity=0.119 Sum_probs=137.5
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++++|||||+|+||++|+++|+++ +.+|+.+.|.... . ....+.+. ...++.++.+|++.
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~-G~~v~~~~r~~~~--~-~~~~~~~~----------~~~~~~~~~~D~~~----- 64 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFARE-GARVVVADRDAEA--A-ERVAAAIA----------AGGRAFARQGDVGS----- 64 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHC-CCeEEEecCCHHH--H-HHHHHHHh----------cCCeEEEEEcCCCC-----
Confidence 3568999999999999999999976 4688888875321 1 11111111 12467888999874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhh----ccCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~ 459 (958)
.+....+. ..+|+|||+|+..... .+ ++....+|+.|+.++.+.+ +..+.++|+++||.+
T Consensus 65 --~~~~~~~~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~ 142 (252)
T PRK06138 65 --AEAVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQL 142 (252)
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChh
Confidence 23333332 3789999999975321 12 3345779999998776544 344557899999975
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCc--Ch-hHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNW--NL-VDLNL 532 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~--n~-~d~~~ 532 (958)
..... .....|+.||...+.+++..+ ..|++++++|||.++++...... .. .+..
T Consensus 143 ~~~~~-----------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~- 204 (252)
T PRK06138 143 ALAGG-----------------RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEAL- 204 (252)
T ss_pred hccCC-----------------CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHH-
Confidence 43210 123579999999999887643 34899999999999887532211 10 0110
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
..... +..| ...|+.++.++++++.++.+.. ..+..+++.+
T Consensus 205 ---~~~~~-~~~~----~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~ 247 (252)
T PRK06138 205 ---REALR-ARHP----MNRFGTAEEVAQAALFLASDESSFATGTTLVVDG 247 (252)
T ss_pred ---HHHHH-hcCC----CCCCcCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence 00000 1111 1236788999999999886543 2355665543
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-11 Score=131.19 Aligned_cols=215 Identities=11% Similarity=0.099 Sum_probs=132.7
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+++|||||||+||++++++|++++ ..|+...|.. .. ..+.+.+.+.. ...++.++.+|++.
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G-~~vv~~~~~~-~~-~~~~~~~~l~~---------~~~~~~~~~~Dl~~------- 63 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERG-YAVCLNYLRN-RD-AAEAVVQAIRR---------QGGEALAVAADVAD------- 63 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CeEEEecCCC-HH-HHHHHHHHHHh---------CCCcEEEEEeccCC-------
Confidence 479999999999999999999765 4554433322 11 11222222211 12467788899874
Q ss_pred HHHHHHHh-------cccCEEEEcccccCccc--------ChHHHHhhhHHHHHHHHHhhccC-------CCccEEEEec
Q psy4557 400 QDEYVSLS-------YEIDMIIHAAAFVNLIL--------PYNALYKSNVLATKNLIEFSFLN-------KIKSFHYVST 457 (958)
Q Consensus 400 ~~~~~~l~-------~~vd~IiH~AA~v~~~~--------~~~~~~~~NV~gt~~ll~~a~~~-------~~k~~~~vST 457 (958)
.+.+..+. ..+|+|||+|+...... .+.....+|+.|+.++++.+... +...++++||
T Consensus 64 ~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS 143 (248)
T PRK06123 64 EADVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSS 143 (248)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECc
Confidence 23444433 36899999998753211 23356789999999988776432 1135889998
Q ss_pred ccc-cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHH
Q psy4557 458 DSI-YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNL 532 (958)
Q Consensus 458 ~~v-~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~ 532 (958)
.+. ++.. .....|+.||...|.++...+ .+|++++++|||.++++......+ ..+.
T Consensus 144 ~~~~~~~~-----------------~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~-~~~~- 204 (248)
T PRK06123 144 MAARLGSP-----------------GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGE-PGRV- 204 (248)
T ss_pred hhhcCCCC-----------------CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccCC-HHHH-
Confidence 654 3311 001259999999999887542 349999999999999885321111 1111
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
+.. .+..|-. -+..+++++++++.++.... ..+.+|++.+
T Consensus 205 ---~~~--~~~~p~~----~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~g 246 (248)
T PRK06123 205 ---DRV--KAGIPMG----RGGTAEEVARAILWLLSDEASYTTGTFIDVSG 246 (248)
T ss_pred ---HHH--HhcCCCC----CCcCHHHHHHHHHHHhCccccCccCCEEeecC
Confidence 111 1122311 12357899999998876432 3467888765
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=155.08 Aligned_cols=111 Identities=26% Similarity=0.445 Sum_probs=103.5
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
.++.++|+++++++|+++|+++ .++.+||+||.++++++|.+|++ .|+++|++|+++++|++++++++|||+++|+++
T Consensus 23 ~~l~~~l~~~a~~~p~~~a~~~-~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 101 (560)
T PRK08974 23 QSLVDMFEQAVARYADQPAFIN-MGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIV 101 (560)
T ss_pred ccHHHHHHHHHHhCCCCceEEE-CCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 4688999999999999999986 46789999999999999999984 899999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
+|+||.++.+++.+++++++++++++++++.+.
T Consensus 102 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~ 134 (560)
T PRK08974 102 VNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHT 134 (560)
T ss_pred eccCccCCHHHHHHHHHhcCceEEEEeccccHH
Confidence 999999999999999999999999998765443
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=139.27 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=114.7
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++|+||||||+||.+++++|++++ .+|++..|... +..+...... ....++.++.+|++.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~~------~~~~~~~~l~------~~~~~~~~~~~Dl~~----- 66 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRG-WHVIMACRNLK------KAEAAAQELG------IPPDSYTIIHIDLGD----- 66 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEECCHH------HHHHHHHHhh------ccCCceEEEEecCCC-----
Confidence 35789999999999999999999775 78888877532 1111111111 012467888899874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc--------cChHHHHhhhHHHHHHHHHhhcc----CC--CccEEEEe
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI--------LPYNALYKSNVLATKNLIEFSFL----NK--IKSFHYVS 456 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~--------~~~~~~~~~NV~gt~~ll~~a~~----~~--~k~~~~vS 456 (958)
.+....+. ..+|+|||+|+..... ..++..+.+|+.|+.++++.+.. .+ ..+++++|
T Consensus 67 --~~~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 67 --LDSVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred --HHHHHHHHHHHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 23333333 2489999999964321 12445678999999999877642 22 25899999
Q ss_pred cccccCCC---CCCCc--cccccc-------------CcCCCCCCCCChhHHHHHHHHHHHHH-h----hCCCCEEEEec
Q psy4557 457 TDSIYPST---SENFQ--EDYTVA-------------DFDDFMTTTSGYGQSKIVSEYLVLNA-G----QMGLPVSIVRC 513 (958)
Q Consensus 457 T~~v~~~~---~~~~~--e~~~~~-------------~~~~~~~~~~gY~~SK~~aE~lv~~a-~----~~glp~~I~R~ 513 (958)
|.+.+... ..+.. ++.... ....+..+...|+.||+..+.+.+.. + ..|++++.+||
T Consensus 145 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~P 224 (322)
T PRK07453 145 TVTANPKELGGKIPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYP 224 (322)
T ss_pred ccccCccccCCccCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecC
Confidence 97664311 00000 000000 00011234578999999888766542 2 24899999999
Q ss_pred Cceecc
Q psy4557 514 GNIGGS 519 (958)
Q Consensus 514 g~i~G~ 519 (958)
|.|++.
T Consensus 225 G~v~~t 230 (322)
T PRK07453 225 GCVADT 230 (322)
T ss_pred CcccCC
Confidence 999764
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-12 Score=153.37 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=104.8
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
..+.+.+++.+..+|+++|+.+ .++.+||.||.++++++|++|.+.|+++|++|+|+++|+++++++++||+++|++++
T Consensus 17 ~n~~~~~~~~a~~~~~~~a~~~-~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v 95 (542)
T PRK07786 17 QNWVNQLARHALMQPDAPALRF-LGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAV 95 (542)
T ss_pred cCHHHHHHHHHHHCCCCeEEEe-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEE
Confidence 4688999999999999999986 467899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|+|+.++.+++.++++++++++++++....+.+
T Consensus 96 pl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~ 128 (542)
T PRK07786 96 PVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVA 128 (542)
T ss_pred EcCccCCHHHHHHHHHhCCCcEEEEccchHHHH
Confidence 999999999999999999999999987655433
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-12 Score=153.59 Aligned_cols=111 Identities=23% Similarity=0.360 Sum_probs=104.6
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.++|.+.++++|+++|+.+ +++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|++++
T Consensus 7 ~~~~~~~~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v 85 (528)
T PRK07470 7 MNLAHFLRQAARRFPDRIALVW-GDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWV 85 (528)
T ss_pred CCHHHHHHHHHHHCCCceEEEE-CCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEE
Confidence 3588999999999999999986 467899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
|+++.++.+++.++++++++++++++.++.+.
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 117 (528)
T PRK07470 86 PTNFRQTPDEVAYLAEASGARAMICHADFPEH 117 (528)
T ss_pred ecCccCCHHHHHHHHHhcCceEEEEcchhHHH
Confidence 99999999999999999999999999876543
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-10 Score=132.27 Aligned_cols=174 Identities=21% Similarity=0.324 Sum_probs=143.5
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
..+.+.||+++||||+|.||.++|+++++.+. ++++.+|++-++..+..++... ..+..++-+||.|.+.+.++++.
T Consensus 244 i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~ 323 (588)
T COG1086 244 IGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEG 323 (588)
T ss_pred HHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhc
Confidence 34678999999999999999999999999985 6888899999999888888764 35677889999999988777653
Q ss_pred HHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhh
Q psy4557 787 VLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVY 866 (958)
Q Consensus 787 ~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y 866 (958)
. ++|+++|.|+.-..+. .+..+ ...+.+|++|+.+++.++... +-.++|++|+--+..| ...|
T Consensus 324 ~-----kvd~VfHAAA~KHVPl-~E~nP---~Eai~tNV~GT~nv~~aa~~~-----~V~~~V~iSTDKAV~P---tNvm 386 (588)
T COG1086 324 H-----KVDIVFHAAALKHVPL-VEYNP---EEAIKTNVLGTENVAEAAIKN-----GVKKFVLISTDKAVNP---TNVM 386 (588)
T ss_pred C-----CCceEEEhhhhccCcc-hhcCH---HHHHHHhhHhHHHHHHHHHHh-----CCCEEEEEecCcccCC---chHh
Confidence 2 5999999999855433 33333 578899999999999998653 2359999999988876 4689
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCccc
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVK 900 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~ 900 (958)
++||..-+.++.+++......+-++.+|.=|-|-
T Consensus 387 GaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVl 420 (588)
T COG1086 387 GATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVL 420 (588)
T ss_pred hHHHHHHHHHHHHHhhccCCCCcEEEEEEeccee
Confidence 9999999999999998777667888888888775
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-12 Score=155.18 Aligned_cols=113 Identities=15% Similarity=0.224 Sum_probs=104.6
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCC--CceeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHHHCC
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHD--GRSITFKQLDEWTDIVGTYLIN-QGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~--~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~ 89 (958)
.++.++++..+..+|+++|+++.+ ++.+||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+++|+
T Consensus 10 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~ 89 (576)
T PRK05620 10 LSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGA 89 (576)
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCC
Confidence 468999999999999999997632 3689999999999999999996 8999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 90 v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+++|+||.++.+++.+++++++++++|++..+.+.+
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 125 (576)
T PRK05620 90 VFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQL 125 (576)
T ss_pred EEeecccccCHHHHHHHHhccCCcEEEEChhhHHHH
Confidence 999999999999999999999999999988765544
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=131.29 Aligned_cols=220 Identities=16% Similarity=0.126 Sum_probs=139.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++++|||||||+||.+++++|++++ .+|+++.|..... .+.+.+.. ...++.++.+|++.+
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G-~~v~~~~r~~~~~----~~~~~~~~---------~~~~~~~~~~D~~~~---- 67 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEG-AIPVIFGRSAPDD----EFAEELRA---------LQPRAEFVQVDLTDD---- 67 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcC-CcEEEEcCChhhH----HHHHHHHh---------cCCceEEEEccCCCH----
Confidence 45789999999999999999999764 6788888764432 22222221 134678889998753
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccC---cc---cChHHHHhhhHHHHHHHHHhhcc---CCCccEEEEeccccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVN---LI---LPYNALYKSNVLATKNLIEFSFL---NKIKSFHYVSTDSIY 461 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~---~~---~~~~~~~~~NV~gt~~ll~~a~~---~~~k~~~~vST~~v~ 461 (958)
+....+. ..+|+|||+|+... +. ..+.....+|+.|+.++.+.+.. .+..+|+++||...+
T Consensus 68 ---~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~ 144 (258)
T PRK08628 68 ---AQCRDAVEQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTAL 144 (258)
T ss_pred ---HHHHHHHHHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhc
Confidence 3333332 36899999999532 11 12345567899999999887642 223579999986553
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCC-cChhHHHHHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKN-WNLVDLNLYILK 536 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~-~n~~d~~~~l~~ 536 (958)
.+. .....|+.||...|.+++..+ ..|++++.+|||.+.++..... +...+. .....
T Consensus 145 ~~~-----------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~-~~~~~ 206 (258)
T PRK08628 145 TGQ-----------------GGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDP-EAKLA 206 (258)
T ss_pred cCC-----------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCH-HHHHH
Confidence 210 123579999999999997643 3589999999999988642110 000000 00011
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecC
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFIN 581 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n 581 (958)
.. ....|. .-.+.+.+++|++++.++... ...+..|.+..
T Consensus 207 ~~--~~~~~~---~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~g 248 (258)
T PRK08628 207 AI--TAKIPL---GHRMTTAEEIADTAVFLLSERSSHTTGQWLFVDG 248 (258)
T ss_pred HH--HhcCCc---cccCCCHHHHHHHHHHHhChhhccccCceEEecC
Confidence 11 111221 113678899999999988653 23456666653
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=137.97 Aligned_cols=210 Identities=14% Similarity=0.138 Sum_probs=137.3
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCe-EEEEecCh--hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAK-VVAVARRI--DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~-Vi~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.++||||+|+||..++++|+++|+. |+.+.+.. ...+.+. .+. ...++.++.+|++|.+++++++++ .++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~ 74 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA-DVS-DSERYVFEHADICDRAELDRIFAQ-----HQP 74 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHH-hcc-cCCceEEEEecCCCHHHHHHHHHh-----cCC
Confidence 5899999999999999999999986 44444432 1222222 111 123567789999999998888764 269
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC----CCcEEEEecCccCcC------------
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR----RPGHILNISSNAGVR------------ 858 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~----~~g~IV~isS~~g~~------------ 858 (958)
|++||+||...... +.+..+.++++|+.|+..+++++.++|.+.+ +..++|++||....-
T Consensus 75 d~vih~A~~~~~~~----~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~ 150 (352)
T PRK10084 75 DAVMHLAAESHVDR----SITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSE 150 (352)
T ss_pred CEEEECCcccCCcc----hhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccc
Confidence 99999999753211 1223467899999999999999988763211 224899999964221
Q ss_pred ---------CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhh------hccc---
Q psy4557 859 ---------PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDK------YDIS--- 919 (958)
Q Consensus 859 ---------~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~------~~~~--- 919 (958)
+......|+.||.+.+.+++.++.++ |+.+..+.|+.|.-+-..... -...... ....
T Consensus 151 ~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~g 227 (352)
T PRK10084 151 ELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTY---GLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKG 227 (352)
T ss_pred cCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEeCCC
Confidence 11234679999999999999988775 556666677666544311000 0000000 0000
Q ss_pred -cCCCCCCHHHHHHHHHHHhcCC
Q psy4557 920 -KAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 920 -~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
....++..+|++++++.++..+
T Consensus 228 ~~~~~~v~v~D~a~a~~~~l~~~ 250 (352)
T PRK10084 228 DQIRDWLYVEDHARALYKVVTEG 250 (352)
T ss_pred CeEEeeEEHHHHHHHHHHHHhcC
Confidence 0123577899999998877644
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-12 Score=152.04 Aligned_cols=113 Identities=23% Similarity=0.322 Sum_probs=106.2
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
..++.++|.++++++|+++|+.+ .++.+||+||.++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~-~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~ 88 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVF-GDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH 88 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 35799999999999999999987 45789999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+|+|+.++.+++.++++.++++++|++.++.+.+
T Consensus 89 v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~ 122 (523)
T PRK08316 89 VPVNFMLTGEELAYILDHSGARAFLVDPALAPTA 122 (523)
T ss_pred EecccccCHHHHHHHHHhCCCCEEEEccchHHHH
Confidence 9999999999999999999999999998765544
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-12 Score=153.85 Aligned_cols=112 Identities=24% Similarity=0.412 Sum_probs=105.4
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.++|.++++.+|+++|+.+ .++.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus 33 ~~l~~~l~~~a~~~p~~~al~~-~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 111 (567)
T PRK06178 33 RPLTEYLRAWARERPQRPAIIF-YGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHV 111 (567)
T ss_pred ccHHHHHHHHHHHCCCceEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEe
Confidence 5699999999999999999986 467899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|++|.++.+++.+++++++++++++++.+.+.+
T Consensus 112 ~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l 144 (567)
T PRK06178 112 PVSPLFREHELSYELNDAGAEVLLALDQLAPVV 144 (567)
T ss_pred ecCCCCCHHHHHHHHHhcCCcEEEEccchHHHH
Confidence 999999999999999999999999988765544
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=133.36 Aligned_cols=219 Identities=13% Similarity=0.078 Sum_probs=136.6
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++||||||+|+||.++++.|+++ +++|++..|.... .+.+.+.+... .-..++.++.+|++.+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~-g~~vi~~~r~~~~---~~~~~~~~~~~-------~~~~~~~~~~~D~~~~------ 65 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEE-GYRVAVADINSEK---AANVAQEINAE-------YGEGMAYGFGADATSE------ 65 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHH---HHHHHHHHHHh-------cCCceeEEEEccCCCH------
Confidence 57999999999999999999876 4688887775321 12222211110 0013678899998742
Q ss_pred HHHHHHHh-------cccCEEEEcccccCc----cc---ChHHHHhhhHHHHHHHHHhhcc----CC-CccEEEEeccc-
Q psy4557 400 QDEYVSLS-------YEIDMIIHAAAFVNL----IL---PYNALYKSNVLATKNLIEFSFL----NK-IKSFHYVSTDS- 459 (958)
Q Consensus 400 ~~~~~~l~-------~~vd~IiH~AA~v~~----~~---~~~~~~~~NV~gt~~ll~~a~~----~~-~k~~~~vST~~- 459 (958)
+....+. ..+|+|||+|+.... .. .++...++|+.|+.++++.+.. .+ ..+++++||.+
T Consensus 66 -~~i~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~ 144 (259)
T PRK12384 66 -QSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSG 144 (259)
T ss_pred -HHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCccc
Confidence 3333222 468999999986532 11 2345568999998887766532 33 24889998854
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.++. .....|+.||...+.+++... .+|+++.++|||.++++.... ..+..+.
T Consensus 145 ~~~~------------------~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~-----~~~~~~~ 201 (259)
T PRK12384 145 KVGS------------------KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQ-----SLLPQYA 201 (259)
T ss_pred ccCC------------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhh-----hhhHHHH
Confidence 2221 113479999999998886543 479999999999987653211 1111111
Q ss_pred HH-------HH-H-hCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC
Q psy4557 536 KA-------IT-R-LGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN 583 (958)
Q Consensus 536 ~~-------~~-~-~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~ 583 (958)
+. .. . ....| ...++..++++++++.++.... ..+.+|++.+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~ 256 (259)
T PRK12384 202 KKLGIKPDEVEQYYIDKVP----LKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQ 256 (259)
T ss_pred HhcCCChHHHHHHHHHhCc----ccCCCCHHHHHHHHHHHcCcccccccCceEEEcCCE
Confidence 00 00 0 01112 2356788999999998875432 246788887643
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-12 Score=151.94 Aligned_cols=110 Identities=25% Similarity=0.315 Sum_probs=103.8
Q ss_pred ccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 11 ~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
...++.++|.++++.+|+++|+++ +++++||+||.++++++|..|++.|+++|++|+++++|++++++++|||+++|++
T Consensus 21 ~~~~l~~~~~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~ 99 (527)
T TIGR02275 21 QDKPLTDILRDQAARYPDAIAIIC-GNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIA 99 (527)
T ss_pred cCCcHHHHHHHHHHHCCCceEEEe-CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeE
Confidence 345789999999999999999987 4678999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
++|+++.++.+++.++++++++++++++...
T Consensus 100 ~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~ 130 (527)
T TIGR02275 100 PVLALFSHRKSELTAYAQQIEPALYIIDRAH 130 (527)
T ss_pred EeccccccCHHHHHHHHHhcCCcEEEEcCcc
Confidence 9999999999999999999999999998653
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-11 Score=128.03 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=130.8
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|+||||+|+||.+++++|++++ .+|+++.|.... .+.+.+.+.. ...++.++.+|++.+
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G-~~Vi~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~D~~~~----- 68 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEG-VNVGLLARTEEN---LKAVAEEVEA---------YGVKVVIATADVSDY----- 68 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCHHH---HHHHHHHHHH---------hCCeEEEEECCCCCH-----
Confidence 4689999999999999999998764 589888886422 1222221111 134788899998753
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccc
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v 460 (958)
+....+. ..+|+|||+|+..... ..++....+|+.|+.++++.+. ..+.++++++||...
T Consensus 69 --~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~ 146 (239)
T PRK07666 69 --EEVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAG 146 (239)
T ss_pred --HHHHHHHHHHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhh
Confidence 3333333 3799999999864221 1234557899999999987764 334568999998654
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
+... .....|+.||...+.+++.. .+.|++++++|||.+..+.....
T Consensus 147 ~~~~-----------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~------------ 197 (239)
T PRK07666 147 QKGA-----------------AVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL------------ 197 (239)
T ss_pred ccCC-----------------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc------------
Confidence 3211 12346999999999887653 24599999999999876532110
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV 570 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~ 570 (958)
+ .+ ......+++.|++|+.++.+....
T Consensus 198 -----~-~~-~~~~~~~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 198 -----G-LT-DGNPDKVMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred -----c-cc-ccCCCCCCCHHHHHHHHHHHHhCC
Confidence 0 00 011224578999999999987653
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-11 Score=130.83 Aligned_cols=205 Identities=17% Similarity=0.155 Sum_probs=129.1
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|+||||+|+||++++++|++++ .+|+.+.|... .+.+.... ...++.++.+|++.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g-~~v~~~~r~~~------~~~~~~~~---------~~~~~~~~~~D~~~~---- 64 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEG-ARVAITGRDPA------SLEAARAE---------LGESALVIRADAGDV---- 64 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCCHH------HHHHHHHH---------hCCceEEEEecCCCH----
Confidence 35689999999999999999999764 67888777421 12111111 124677788888742
Q ss_pred CcHHHHHHH-------hcccCEEEEcccccCccc-------ChHHHHhhhHHHHHHHHHhhcc--CCCccEEEEecc-cc
Q psy4557 398 KNQDEYVSL-------SYEIDMIIHAAAFVNLIL-------PYNALYKSNVLATKNLIEFSFL--NKIKSFHYVSTD-SI 460 (958)
Q Consensus 398 ~~~~~~~~l-------~~~vd~IiH~AA~v~~~~-------~~~~~~~~NV~gt~~ll~~a~~--~~~k~~~~vST~-~v 460 (958)
++...+ ...+|+|||+|+..++.. .+.....+|+.|+.++++.+.. ....+++++||. +.
T Consensus 65 ---~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~ 141 (249)
T PRK06500 65 ---AAQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAH 141 (249)
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhc
Confidence 222222 246899999999764321 2335677999999999988863 122467777664 33
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
++. .....|+.||+..|.+++..+ ..|+++.++|||.++++.........+....+.+
T Consensus 142 ~~~------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~ 203 (249)
T PRK06500 142 IGM------------------PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAA 203 (249)
T ss_pred cCC------------------CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHH
Confidence 331 123579999999999986532 3599999999999988642111111111111222
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcC
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTN 569 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~ 569 (958)
... ...|- . -+.+++.++++++.++..
T Consensus 204 ~~~--~~~~~-~---~~~~~~~va~~~~~l~~~ 230 (249)
T PRK06500 204 QIQ--ALVPL-G---RFGTPEEIAKAVLYLASD 230 (249)
T ss_pred HHH--hcCCC-C---CCcCHHHHHHHHHHHcCc
Confidence 111 11221 1 245789999999998753
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-12 Score=150.36 Aligned_cols=109 Identities=21% Similarity=0.315 Sum_probs=103.1
Q ss_pred cHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEec
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vP 93 (958)
++.+.|.++++++|+++|+++ +++.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~a~~~-~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (497)
T PRK06145 3 NLSASIAFHARRTPDRAALVY-RDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLP 81 (497)
T ss_pred cHHHHHHHHHHHCCCceEEEE-CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 577899999999999999986 4678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 94 LETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 94 ln~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
+|+.++.+++.++++++++++++++.++..
T Consensus 82 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 111 (497)
T PRK06145 82 INYRLAADEVAYILGDAGAKLLLVDEEFDA 111 (497)
T ss_pred cccccCHHHHHHHHHhcCCcEEEEccchhh
Confidence 999999999999999999999999876543
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-11 Score=128.22 Aligned_cols=207 Identities=14% Similarity=0.116 Sum_probs=133.7
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|+||||||++|++++++|+++ +.+|++++|... ...++.+.+. .. .++.++.+|++.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~~---~~~~~~~~l~---------~~-~~~~~~~~D~~~~----- 66 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE-GYKVAITARDQK---ELEEAAAELN---------NK-GNVLGLAADVRDE----- 66 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCHH---HHHHHHHHHh---------cc-CcEEEEEccCCCH-----
Confidence 468999999999999999999975 578999988532 1222222111 11 4688889998752
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhcc---CCCccEEEEeccccc
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSFL---NKIKSFHYVSTDSIY 461 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~~---~~~k~~~~vST~~v~ 461 (958)
+.+..+. ..+|+|||+|+..... . .+.+...+|+.|+.++++.+.. .+..+++++||...+
T Consensus 67 --~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~ 144 (237)
T PRK07326 67 --ADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGT 144 (237)
T ss_pred --HHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhc
Confidence 3333322 3789999999865321 1 2345677899999998887653 233579999986543
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA 537 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~ 537 (958)
... .....|+.||+..+.+.+.. ...|++++++|||.+..+.... ...
T Consensus 145 ~~~-----------------~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~--~~~--------- 196 (237)
T PRK07326 145 NFF-----------------AGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGH--TPS--------- 196 (237)
T ss_pred cCC-----------------CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccc--ccc---------
Confidence 210 12347999999988877653 3459999999999886643110 000
Q ss_pred HHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC-CCCceEEecCCCC
Q psy4557 538 ITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN-NANKIYNFINTNP 584 (958)
Q Consensus 538 ~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~-~~~~v~h~~n~~~ 584 (958)
....+ ++..+.+++.++.+...+. ......++.+..+
T Consensus 197 -------~~~~~---~~~~~d~a~~~~~~l~~~~~~~~~~~~~~~~~~ 234 (237)
T PRK07326 197 -------EKDAW---KIQPEDIAQLVLDLLKMPPRTLPSKIEVRPSRP 234 (237)
T ss_pred -------hhhhc---cCCHHHHHHHHHHHHhCCccccccceEEecCCC
Confidence 00011 3677889999988876543 2334455554333
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-12 Score=161.95 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=101.7
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeC--CC--ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDH--DG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~--~~--~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~ 87 (958)
..++.++|.+.++++|+++|+... .+ +.+||+|+.++++++|++|++.|+++||+|+|+++|+++|+++++||+++
T Consensus 426 ~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~ 505 (1452)
T PTZ00297 426 VRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALY 505 (1452)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 358999999999999999999631 12 57999999999999999999999999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhhh
Q psy4557 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126 (958)
Q Consensus 88 G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 126 (958)
|+++||+++ +.++++|+++++++++||++.+..+.+.
T Consensus 506 GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~ 542 (1452)
T PTZ00297 506 GFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAIL 542 (1452)
T ss_pred CCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHH
Confidence 999999985 4789999999999999999877665543
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=133.78 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=114.4
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|+||||||+||.+++++|+++ +.+|+++.|..... . ...++.++.+|++.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~-g~~V~~~~r~~~~~------~--------------~~~~~~~~~~D~~d------ 56 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARA-GYRVFGTSRNPARA------A--------------PIPGVELLELDVTD------ 56 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCChhhc------c--------------ccCCCeeEEeecCC------
Confidence 357999999999999999999876 57898888853211 0 01357788899874
Q ss_pred cHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEecccc
Q psy4557 399 NQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~v 460 (958)
.++...+.. .+|+|||||+..... ..++....+|+.|+.++++.+ .+.+.++|+++||...
T Consensus 57 -~~~~~~~~~~~~~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~ 135 (270)
T PRK06179 57 -DASVQAAVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLG 135 (270)
T ss_pred -HHHHHHHHHHHHHhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccc
Confidence 344554443 579999999975431 123556789999999988764 3455679999998654
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCC
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLE 521 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~ 521 (958)
+... .....|+.||...|.+++.. ...|++++++|||.+.++..
T Consensus 136 ~~~~-----------------~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~ 183 (270)
T PRK06179 136 FLPA-----------------PYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFD 183 (270)
T ss_pred cCCC-----------------CCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccc
Confidence 3211 12347999999999988763 24599999999999987653
|
|
| >KOG1431|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=122.16 Aligned_cols=237 Identities=16% Similarity=0.134 Sum_probs=156.0
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||+||.+|+.|.+.+-+++.. + .+..+ .| ...++|++
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~----------~------------------------e~wvf-~~---skd~DLt~ 43 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFD----------D------------------------ENWVF-IG---SKDADLTN 43 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCC----------C------------------------cceEE-ec---cccccccc
Confidence 47999999999999999876544310 0 00111 11 11223334
Q ss_pred HHHHHHHh--cccCEEEEcccccC---cccChH-HHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCC-CCCCcccc
Q psy4557 400 QDEYVSLS--YEIDMIIHAAAFVN---LILPYN-ALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPST-SENFQEDY 472 (958)
Q Consensus 400 ~~~~~~l~--~~vd~IiH~AA~v~---~~~~~~-~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~-~~~~~e~~ 472 (958)
..+-+.+. .++.+|||+||.|. ++..|. +|.+.|+.-.-|+|..|-..++++++++-|.-+|+.. ..+++|..
T Consensus 44 ~a~t~~lF~~ekPthVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtm 123 (315)
T KOG1431|consen 44 LADTRALFESEKPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETM 123 (315)
T ss_pred hHHHHHHHhccCCceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHH
Confidence 34444443 56899999999983 344443 6888899999999999999999999999888899864 33444433
Q ss_pred cccCcCCCCCCCCChhHHHHHHHHHHHHH-hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh---CCcC---
Q psy4557 473 TVADFDDFMTTTSGYGQSKIVSEYLVLNA-GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL---GYAP--- 545 (958)
Q Consensus 473 ~~~~~~~~~~~~~gY~~SK~~aE~lv~~a-~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~---g~~P--- 545 (958)
-... ++....-||+..|.++...-+.. .++|-.++-.-|.|+||+.++-.......++.|++..... |.-+
T Consensus 124 vh~g--pphpsN~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~V 201 (315)
T KOG1431|consen 124 VHNG--PPHPSNFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTV 201 (315)
T ss_pred hccC--CCCCCchHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEE
Confidence 2222 22234559999998888665544 4679999999999999998643222233455555544332 3311
Q ss_pred --CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCC--CCCCHHHHHHHHHHc
Q psy4557 546 --DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINT--NPIHIKTLVSVLNTY 597 (958)
Q Consensus 546 --~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~--~~~~~~~l~~~l~~~ 597 (958)
.......|+++|++|++++.+..+-..... .++... ..+++.|+.+...+.
T Consensus 202 wGsG~PlRqFiys~DLA~l~i~vlr~Y~~vEp-iils~ge~~EVtI~e~aeaV~ea 256 (315)
T KOG1431|consen 202 WGSGSPLRQFIYSDDLADLFIWVLREYEGVEP-IILSVGESDEVTIREAAEAVVEA 256 (315)
T ss_pred ecCCChHHHHhhHhHHHHHHHHHHHhhcCccc-eEeccCccceeEHHHHHHHHHHH
Confidence 111247899999999999999876544333 344433 478999998887653
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.3e-11 Score=127.64 Aligned_cols=197 Identities=14% Similarity=0.067 Sum_probs=131.7
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.+++|||||||++|.+|+++|++++ .+|+++.|.... ...+.+.+.. ...++.++.+|++.+
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~D~~~~----- 67 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAG-WDLALVARSQDA---LEALAAELRS---------TGVKAAAYSIDLSNP----- 67 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHH---HHHHHHHHHh---------CCCcEEEEEccCCCH-----
Confidence 4689999999999999999999764 589999885321 1222222211 124788899999853
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEecccc
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~v 460 (958)
+....+. ..+|+|||+|+..... ..+.....+|+.|+.++++.+ .+.+..+++++||...
T Consensus 68 --~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 145 (241)
T PRK07454 68 --EAIAPGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAA 145 (241)
T ss_pred --HHHHHHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHh
Confidence 3332222 3589999999864321 123456778999988887665 3344568999999876
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
+++. .....|+.||...+.+.+.. ...|++++++|||.+-.+.. +....
T Consensus 146 ~~~~-----------------~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~----~~~~~------ 198 (241)
T PRK07454 146 RNAF-----------------PQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLW----DTETV------ 198 (241)
T ss_pred CcCC-----------------CCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcc----ccccc------
Confidence 5421 12346999999999887653 23599999999999865431 11000
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV 570 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~ 570 (958)
.+... ...+++.+++|++++.+...+
T Consensus 199 -------~~~~~-~~~~~~~~~va~~~~~l~~~~ 224 (241)
T PRK07454 199 -------QADFD-RSAMLSPEQVAQTILHLAQLP 224 (241)
T ss_pred -------ccccc-cccCCCHHHHHHHHHHHHcCC
Confidence 00010 123578999999999998655
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.3e-12 Score=149.22 Aligned_cols=108 Identities=25% Similarity=0.437 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEecC
Q psy4557 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL 94 (958)
Q Consensus 15 l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vPl 94 (958)
+.++|.+.+.++|+++|+.+ .++.+||+||.++++++|+.|++.|+++||+|+++++|+.++++++|||+++|++++|+
T Consensus 2 ~~~~~~~~~~~~p~~~a~~~-~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 80 (515)
T TIGR03098 2 LHHLLEDAAARLPDATALVH-HDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI 80 (515)
T ss_pred HHHHHHHHHHHCCCCeEEEE-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence 67889999999999999987 45789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 95 ETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 95 n~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
|+.++.+++..+++.++++++|++....+
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 109 (515)
T TIGR03098 81 NPLLKAEQVAHILADCNVRLLVTSSERLD 109 (515)
T ss_pred CCCCCHHHHHHHHHcCCCeEEEEccchhh
Confidence 99999999999999999999999876543
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-11 Score=138.30 Aligned_cols=210 Identities=17% Similarity=0.147 Sum_probs=138.1
Q ss_pred ccccCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHH--HHHHhhcCCCcEEEEEecCCCHHHHHHHH
Q psy4557 707 NIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLEN--LKTSLQNAPGSIIVKKLDVTIENDVKKVV 784 (958)
Q Consensus 707 ~~~~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~--~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~ 784 (958)
...-....++++++||||+|+||+.++++|+++|++|+++.|+.++.+. ..+.+......+.++.+|++|.+++.+++
T Consensus 51 ~~~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~ 130 (390)
T PLN02657 51 QSFRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVL 130 (390)
T ss_pred ccccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHH
Confidence 3334455688899999999999999999999999999999998765431 11122222235778899999999998887
Q ss_pred HHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 785 REVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 785 ~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
+.. .+++|+||||+|..... . ...+++|+.++..+++++. + .+.+++|++||..... ...
T Consensus 131 ~~~---~~~~D~Vi~~aa~~~~~-----~----~~~~~vn~~~~~~ll~aa~----~-~gv~r~V~iSS~~v~~---p~~ 190 (390)
T PLN02657 131 FSE---GDPVDVVVSCLASRTGG-----V----KDSWKIDYQATKNSLDAGR----E-VGAKHFVLLSAICVQK---PLL 190 (390)
T ss_pred HHh---CCCCcEEEECCccCCCC-----C----ccchhhHHHHHHHHHHHHH----H-cCCCEEEEEeeccccC---cch
Confidence 643 12799999999853211 1 1234678888777766653 2 2346999999987543 244
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC---Chhhhhhhcccc--CCCCCCHHHHHHHHHHHhc
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST---DRDVVDKYDISK--AVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~---~~~~~~~~~~~~--~~~~~~p~~ia~~i~~~l~ 939 (958)
.|..+|...+...+. ...|+++..|.|+.+.-++..... .......+.... ....+..+|+|..++.++.
T Consensus 191 ~~~~sK~~~E~~l~~-----~~~gl~~tIlRp~~~~~~~~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~ 265 (390)
T PLN02657 191 EFQRAKLKFEAELQA-----LDSDFTYSIVRPTAFFKSLGGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIADCVL 265 (390)
T ss_pred HHHHHHHHHHHHHHh-----ccCCCCEEEEccHHHhcccHHHHHhhccCCceEEecCCcccccCceeHHHHHHHHHHHHh
Confidence 688889887776543 246899999999877543321100 000000000000 1124678899999988776
Q ss_pred CC
Q psy4557 940 QP 941 (958)
Q Consensus 940 ~~ 941 (958)
++
T Consensus 266 ~~ 267 (390)
T PLN02657 266 DE 267 (390)
T ss_pred Cc
Confidence 54
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.7e-12 Score=148.60 Aligned_cols=108 Identities=24% Similarity=0.360 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEecC
Q psy4557 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL 94 (958)
Q Consensus 15 l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vPl 94 (958)
+.+.|.+.+..+|+++|+.+ .++++||+||.++++++|+.|.+.|+++|++|+++++|+.++++++|||+++|++++|+
T Consensus 2 ~~~~l~~~a~~~p~~~a~~~-~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~ 80 (502)
T TIGR01734 2 LIEAIQAFAETYPQTIAYRY-QGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV 80 (502)
T ss_pred HHHHHHHHHHHCCCceEEEc-CCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCC
Confidence 56788999999999999976 46789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 95 ETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 95 n~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
|+.++.+++.++++.++++++|++.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 109 (502)
T TIGR01734 81 DTSIPSERIEMIIEAAGPELVIHTAELSI 109 (502)
T ss_pred CCcChHHHHHHHHHhcCCCEEEecccccc
Confidence 99999999999999999999999876543
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-12 Score=166.13 Aligned_cols=115 Identities=22% Similarity=0.278 Sum_probs=105.4
Q ss_pred ccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 11 ~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
...++.+.|++.++++|+++|+++..++++||+||.++++++|++|++ ++++||+|+++++|+++++++++||+++|++
T Consensus 613 ~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v 691 (1146)
T PRK08633 613 ALPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKV 691 (1146)
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCE
Confidence 345789999999999999999986446789999999999999999987 5899999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhhh
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 126 (958)
++|+|+.++.+++.+++++++++++++++++.+.+.
T Consensus 692 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 727 (1146)
T PRK08633 692 PVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLK 727 (1146)
T ss_pred EEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHh
Confidence 999999999999999999999999999887665543
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.7e-11 Score=130.20 Aligned_cols=218 Identities=15% Similarity=0.132 Sum_probs=141.4
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++++||||||+|+||++++++|+++ +.+|+...|.... ..+.+.+.+.. ...++.++.+|++.+
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~-G~~V~l~~r~~~~--~~~~~~~~~~~---------~~~~~~~~~~Dl~~~--- 108 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKE-GADIAIVYLDEHE--DANETKQRVEK---------EGVKCLLIPGDVSDE--- 108 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcch--HHHHHHHHHHh---------cCCeEEEEEccCCCH---
Confidence 35679999999999999999999976 4678777775432 12222222221 124678889998742
Q ss_pred CCcHHHHHHHh-------cccCEEEEcccccCccc-----C---hHHHHhhhHHHHHHHHHhhccC--CCccEEEEeccc
Q psy4557 397 LKNQDEYVSLS-------YEIDMIIHAAAFVNLIL-----P---YNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDS 459 (958)
Q Consensus 397 L~~~~~~~~l~-------~~vd~IiH~AA~v~~~~-----~---~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~ 459 (958)
+....+. ..+|+|||+|+...... + +......|+.|+.++++.+... ...+|+++||.+
T Consensus 109 ----~~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~ 184 (290)
T PRK06701 109 ----AFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSIT 184 (290)
T ss_pred ----HHHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEeccc
Confidence 3333332 36899999999643221 1 2345778999999999877542 225899999987
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+.... ....|+.||...+.+++..+ ..|++++.+|||.+..+....... .+. .
T Consensus 185 ~~~~~~-----------------~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~-~~~----~ 242 (290)
T PRK06701 185 GYEGNE-----------------TLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFD-EEK----V 242 (290)
T ss_pred ccCCCC-----------------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccC-HHH----H
Confidence 764210 12369999999999887643 249999999999988764322111 111 1
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
+... ...| .-.+..++++|++++.++.... -.+.++++.+
T Consensus 243 ~~~~--~~~~----~~~~~~~~dva~~~~~ll~~~~~~~~G~~i~idg 284 (290)
T PRK06701 243 SQFG--SNTP----MQRPGQPEELAPAYVFLASPDSSYITGQMLHVNG 284 (290)
T ss_pred HHHH--hcCC----cCCCcCHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence 1111 1112 2346778999999998876532 2456777765
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.6e-11 Score=128.25 Aligned_cols=212 Identities=11% Similarity=0.104 Sum_probs=132.5
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|+||||||+||.+++++|+++ +.+|+++.|..+ ++.+.. ..++.++.+|++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~-G~~V~~~~r~~~------~l~~~~------------~~~~~~~~~Dv~~------ 57 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ-GYTVYGAARRVD------KMEDLA------------SLGVHPLSLDVTD------ 57 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHH------HHHHHH------------hCCCeEEEeeCCC------
Confidence 468999999999999999999875 578988888532 222211 1246778899874
Q ss_pred cHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHH----HHHHhhccCCCccEEEEecccc
Q psy4557 399 NQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATK----NLIEFSFLNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~----~ll~~a~~~~~k~~~~vST~~v 460 (958)
.+....+.. .+|+|||+|+..... ..++....+|+.|+. .++..+++.+..+++++||.+.
T Consensus 58 -~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~ 136 (273)
T PRK06182 58 -EASIKAAVDTIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGG 136 (273)
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhh
Confidence 344444443 789999999975431 123456678999954 4455555555678999998643
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCc-----C-----
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNW-----N----- 526 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~-----n----- 526 (958)
+... .....|+.||...+.+.+.. ...|++++++|||.+..+...... +
T Consensus 137 ~~~~-----------------~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~ 199 (273)
T PRK06182 137 KIYT-----------------PLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGA 199 (273)
T ss_pred cCCC-----------------CCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccc
Confidence 2100 01236999999999987543 345999999999999766421100 0
Q ss_pred hhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEec
Q psy4557 527 LVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFI 580 (958)
Q Consensus 527 ~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~ 580 (958)
..+....+.+..... .| ...+...+.+|++++.+..... ....|.+.
T Consensus 200 ~~~~~~~~~~~~~~~--~~----~~~~~~~~~vA~~i~~~~~~~~-~~~~~~~g 246 (273)
T PRK06182 200 YAEQAQAVAASMRST--YG----SGRLSDPSVIADAISKAVTARR-PKTRYAVG 246 (273)
T ss_pred hHHHHHHHHHHHHHh--hc----cccCCCHHHHHHHHHHHHhCCC-CCceeecC
Confidence 001010111111110 01 2346789999999999876432 23455544
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-11 Score=129.86 Aligned_cols=202 Identities=16% Similarity=0.184 Sum_probs=132.2
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++||||||+|+||.++++.|++++ .+|+.+.|.... .+.+.+.+.. ...++.++.+|++.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g-~~Vi~~~r~~~~---~~~~~~~l~~---------~~~~~~~~~~Dl~~------- 61 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAG-AQLVLAARNETR---LASLAQELAD---------HGGEALVVPTDVSD------- 61 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH---HHHHHHHHHh---------cCCcEEEEEccCCC-------
Confidence 479999999999999999998664 688888875321 1222222211 12467888999874
Q ss_pred HHHHHHHh-------cccCEEEEcccccCcc---c--C---hHHHHhhhHHHHHHHHHhhcc---CCCccEEEEeccccc
Q psy4557 400 QDEYVSLS-------YEIDMIIHAAAFVNLI---L--P---YNALYKSNVLATKNLIEFSFL---NKIKSFHYVSTDSIY 461 (958)
Q Consensus 400 ~~~~~~l~-------~~vd~IiH~AA~v~~~---~--~---~~~~~~~NV~gt~~ll~~a~~---~~~k~~~~vST~~v~ 461 (958)
.+....+. ..+|+|||||+..... . + +.+...+|+.|+.++++.+.. .+..+++++||.+.+
T Consensus 62 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~ 141 (263)
T PRK06181 62 AEACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGL 141 (263)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccccc
Confidence 23444333 2689999999875431 1 2 334578999999999987742 233678999987665
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA 537 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~ 537 (958)
... .....|+.||...|.+++.. ...|+++.++|||.+..+.........+
T Consensus 142 ~~~-----------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~~~-------- 196 (263)
T PRK06181 142 TGV-----------------PTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALDGDG-------- 196 (263)
T ss_pred CCC-----------------CCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhccccc--------
Confidence 321 12347999999999888653 2359999999999987654221111100
Q ss_pred HHHhCCcCCCCCcCCcccHHHHHHHHHHHhcC
Q psy4557 538 ITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTN 569 (958)
Q Consensus 538 ~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~ 569 (958)
......| . ....+++++++|++++.+...
T Consensus 197 -~~~~~~~-~-~~~~~~~~~dva~~i~~~~~~ 225 (263)
T PRK06181 197 -KPLGKSP-M-QESKIMSAEECAEAILPAIAR 225 (263)
T ss_pred -ccccccc-c-cccCCCCHHHHHHHHHHHhhC
Confidence 0011111 1 123689999999999998864
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-11 Score=128.31 Aligned_cols=220 Identities=11% Similarity=0.028 Sum_probs=137.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..+++|||||+|+||.+++++|++++ .+|+.+.|.... ..+.+.+.+.. ...++.++.+|++++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g-~~v~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~Dl~d~---- 71 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHG-FDVAVHYNRSRD--EAEALAAEIRA---------LGRRAVALQADLADE---- 71 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHH--HHHHHHHHHHh---------cCCeEEEEEcCCCCH----
Confidence 35689999999999999999998764 577766654321 11222221111 124678889998753
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccC----CCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLN----KIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~----~~k~~~~vST~~ 459 (958)
+....+. ..+|+|||||+..... ..++..+++|+.|+.++++.+... ....++++||..
T Consensus 72 ---~~~~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~ 148 (258)
T PRK09134 72 ---AEVRALVARASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQR 148 (258)
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchh
Confidence 3333322 3589999999864321 123456789999999998876532 234677776654
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhh---CCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ---MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~---~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
.+... .....|+.||...|.+.+..++ .++.++.++||.+..... .....+..
T Consensus 149 ~~~~~-----------------p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~----~~~~~~~~--- 204 (258)
T PRK09134 149 VWNLN-----------------PDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGR----QSPEDFAR--- 204 (258)
T ss_pred hcCCC-----------------CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCcc----cChHHHHH---
Confidence 32210 0124799999999998877442 248999999998864321 11111111
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCH
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHI 587 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~ 587 (958)
.. ...|. -....++.+|++++.++..+...++.|++.....++|
T Consensus 205 -~~--~~~~~----~~~~~~~d~a~~~~~~~~~~~~~g~~~~i~gg~~~~~ 248 (258)
T PRK09134 205 -QH--AATPL----GRGSTPEEIAAAVRYLLDAPSVTGQMIAVDGGQHLAW 248 (258)
T ss_pred -HH--hcCCC----CCCcCHHHHHHHHHHHhcCCCcCCCEEEECCCeeccc
Confidence 11 11121 1236789999999998876555677888876555554
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.6e-11 Score=134.30 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=117.8
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
.++||||+|+||+.+|++|+++|++|++++|...........+... +.++.++.+|+++.+++.++++. .++|+
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d~ 76 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHD-----HAIDT 76 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhc-----CCCCE
Confidence 5899999999999999999999999999876543322222222221 23466788999999888777653 36999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-----------C-CCCh
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP-----------F-AGLA 864 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~-----------~-~~~~ 864 (958)
+||+||...... ..+.....+++|+.++..+++++ .+. +.+++|++||....-. . ....
T Consensus 77 vvh~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~-~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~ 147 (338)
T PRK10675 77 VIHFAGLKAVGE----SVQKPLEYYDNNVNGTLRLISAM----RAA-NVKNLIFSSSATVYGDQPKIPYVESFPTGTPQS 147 (338)
T ss_pred EEECCccccccc----hhhCHHHHHHHHHHHHHHHHHHH----HHc-CCCEEEEeccHHhhCCCCCCccccccCCCCCCC
Confidence 999999764321 12334567899999999887754 322 3468999999753211 0 2356
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCccc
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVK 900 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~ 900 (958)
.|+.+|++.+.+.+.++++. .++++..+.|+.+.
T Consensus 148 ~Y~~sK~~~E~~~~~~~~~~--~~~~~~ilR~~~v~ 181 (338)
T PRK10675 148 PYGKSKLMVEQILTDLQKAQ--PDWSIALLRYFNPV 181 (338)
T ss_pred hhHHHHHHHHHHHHHHHHhc--CCCcEEEEEeeeec
Confidence 89999999999999987664 35666666654443
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=128.91 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=113.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++|+||||||++|+++++.|++++..+|+.+.|.... +.+ ...++.++.+|++.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~------~~~-------------~~~~~~~~~~D~~~----- 60 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES------VTD-------------LGPRVVPLQLDVTD----- 60 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh------hhh-------------cCCceEEEEecCCC-----
Confidence 346899999999999999999997754378888875432 111 12468888999874
Q ss_pred CcHHHHHHHhc---ccCEEEEcccccCcc--------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccccC
Q psy4557 398 KNQDEYVSLSY---EIDMIIHAAAFVNLI--------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSIYP 462 (958)
Q Consensus 398 ~~~~~~~~l~~---~vd~IiH~AA~v~~~--------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v~~ 462 (958)
.+....+.. .+|+|||+|+..... ..+.....+|+.|+.++++.+. ..+..+|+++||...+.
T Consensus 61 --~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~ 138 (238)
T PRK08264 61 --PASVAAAAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV 138 (238)
T ss_pred --HHHHHHHHHhcCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc
Confidence 244444443 589999999972211 1123456789999999988764 23456799999876543
Q ss_pred CCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccC
Q psy4557 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSL 520 (958)
Q Consensus 463 ~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~ 520 (958)
+. .....|+.||...|.++.... ..|++++++|||.+.++.
T Consensus 139 ~~-----------------~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 139 NF-----------------PNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred CC-----------------CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence 11 123579999999998887643 348999999999987653
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-11 Score=134.57 Aligned_cols=168 Identities=17% Similarity=0.189 Sum_probs=122.0
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
.++||||+|+||..++++|+++|++|++++|......+....+... ..+..+.+|+++.+++.++++. +++|++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~-----~~~d~v 74 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERI-TRVTFVEGDLRDRELLDRLFEE-----HKIDAV 74 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccc-cceEEEECCCCCHHHHHHHHHh-----CCCcEE
Confidence 3789999999999999999999999998876433222222222211 2466788999999998877763 479999
Q ss_pred EEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-----------CCCChhh
Q psy4557 798 VNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP-----------FAGLAVY 866 (958)
Q Consensus 798 InnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~-----------~~~~~~Y 866 (958)
|||||...... +.+.....+++|+.++..+++++.. .+.+++|++||....-. ......|
T Consensus 75 v~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~~~~v~~ss~~~~g~~~~~~~~e~~~~~~~~~y 145 (328)
T TIGR01179 75 IHFAGLIAVGE----SVQDPLKYYRNNVVNTLNLLEAMQQ-----TGVKKFIFSSSAAVYGEPSSIPISEDSPLGPINPY 145 (328)
T ss_pred EECccccCcch----hhcCchhhhhhhHHHHHHHHHHHHh-----cCCCEEEEecchhhcCCCCCCCccccCCCCCCCch
Confidence 99999753321 2234457789999999998876532 23469999998654311 1134679
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCC
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTE 902 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~ 902 (958)
+.+|++.+.+++.++.+ ..++++..+.|+.+..+
T Consensus 146 ~~sK~~~e~~~~~~~~~--~~~~~~~ilR~~~v~g~ 179 (328)
T TIGR01179 146 GRSKLMSERILRDLSKA--DPGLSYVILRYFNVAGA 179 (328)
T ss_pred HHHHHHHHHHHHHHHHh--ccCCCEEEEecCcccCC
Confidence 99999999999998765 25789999999877665
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.9e-11 Score=128.48 Aligned_cols=161 Identities=17% Similarity=0.169 Sum_probs=109.7
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++||||||||+||.++++.|++. +.+|++++|.... ...+.+.... ...++.++.+|++.+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~-G~~v~~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~D~~~~------ 63 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARK-GHNVIAGVQIAPQ---VTALRAEAAR---------RGLALRVEKLDLTDA------ 63 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHH---HHHHHHHHHh---------cCCcceEEEeeCCCH------
Confidence 47999999999999999999876 4789898885321 1222222111 123578888998742
Q ss_pred HHHHHHHhc-ccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHh----hccCCCccEEEEecccccCCCCCC
Q psy4557 400 QDEYVSLSY-EIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEF----SFLNKIKSFHYVSTDSIYPSTSEN 467 (958)
Q Consensus 400 ~~~~~~l~~-~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~----a~~~~~k~~~~vST~~v~~~~~~~ 467 (958)
+....... .+|+|||||+..... . .+.....+|+.|+.++.+. +.+.+.++|+++||...+...
T Consensus 64 -~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~--- 139 (257)
T PRK09291 64 -IDRAQAAEWDVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITG--- 139 (257)
T ss_pred -HHHHHHhcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCC---
Confidence 44544443 899999999964321 1 1334567899998776553 334455789999986432110
Q ss_pred CcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCcee
Q psy4557 468 FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIG 517 (958)
Q Consensus 468 ~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~ 517 (958)
.....|+.||...|.+++... ..|++++++|||.+.
T Consensus 140 --------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~ 179 (257)
T PRK09291 140 --------------PFTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYL 179 (257)
T ss_pred --------------CCcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccc
Confidence 123579999999999886532 359999999999774
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-12 Score=164.80 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=99.8
Q ss_pred cccHHHHHHHHHHhCC-CCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 12 EGALHYMFRNQAKRTP-DKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~p-d~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
..++.+.+.+.++++| +++|+.+.+++++||+||+++++++|+.|+. |+++||+|+++++|+++++++++||+++|++
T Consensus 630 ~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v 708 (1140)
T PRK06814 630 DRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV 708 (1140)
T ss_pred cCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCE
Confidence 3457788888888886 5677765446789999999999999999975 9999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
++|+||+++.+++.+++++++++++|+++++.+
T Consensus 709 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 741 (1140)
T PRK06814 709 PAMINFSAGIANILSACKAAQVKTVLTSRAFIE 741 (1140)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHh
Confidence 999999999999999999999999999876543
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=124.19 Aligned_cols=211 Identities=15% Similarity=0.178 Sum_probs=135.9
Q ss_pred eEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcHH
Q psy4557 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQD 401 (958)
Q Consensus 322 VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~~ 401 (958)
|||||++|+||+++++.|+++ +.+|+++.|.... ..+.+.+.+.. ...++.++.+|++.+ +
T Consensus 1 vlItG~~g~iG~~la~~l~~~-G~~v~~~~r~~~~--~~~~~~~~~~~---------~~~~~~~~~~D~~~~-------~ 61 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKE-GAKVIITYRSSEE--GAEEVVEELKA---------YGVKALGVVCDVSDR-------E 61 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCchh--HHHHHHHHHHh---------cCCceEEEEecCCCH-------H
Confidence 589999999999999999876 4689888886421 11122221111 123578889998753 3
Q ss_pred HHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEeccc-ccC
Q psy4557 402 EYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDS-IYP 462 (958)
Q Consensus 402 ~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~-v~~ 462 (958)
..+.+. ..+|.|||+|+..... ..++.....|+.|+.++++.+.. .+.++|+++||.+ ++|
T Consensus 62 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g 141 (239)
T TIGR01830 62 DVKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMG 141 (239)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCC
Confidence 333332 3579999999976421 12345567899999999987753 3446899999964 443
Q ss_pred CCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHH
Q psy4557 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI 538 (958)
Q Consensus 463 ~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~ 538 (958)
.. ....|+.+|...|.+++... ..|++++++|||.+.++.... .+ .++. +..
T Consensus 142 ~~------------------~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~-~~-~~~~----~~~ 197 (239)
T TIGR01830 142 NA------------------GQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDK-LS-EKVK----KKI 197 (239)
T ss_pred CC------------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhh-cC-hHHH----HHH
Confidence 11 12469999999998876532 359999999999886543211 11 1111 111
Q ss_pred HHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecC
Q psy4557 539 TRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFIN 581 (958)
Q Consensus 539 ~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n 581 (958)
.+..| ..-+.+++.++++++.++... ...+++||+.+
T Consensus 198 --~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~ 236 (239)
T TIGR01830 198 --LSQIP----LGRFGTPEEVANAVAFLASDEASYITGQVIHVDG 236 (239)
T ss_pred --HhcCC----cCCCcCHHHHHHHHHHHhCcccCCcCCCEEEeCC
Confidence 12222 112567899999998887543 23577899864
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=148.43 Aligned_cols=108 Identities=22% Similarity=0.127 Sum_probs=103.2
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
..++.++|.++++++|+++|+++. ++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~a~~~~-~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~ 89 (524)
T PRK06188 11 GATYGHLLVSALKRYPDRPALVLG-DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR 89 (524)
T ss_pred CccHHHHHHHHHHHCCCCeEEEEC-CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence 457999999999999999999874 5789999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGE 120 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~ 120 (958)
+|++|.++.+++.+++++++++++++++.
T Consensus 90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 118 (524)
T PRK06188 90 TALHPLGSLDDHAYVLEDAGISTLIVDPA 118 (524)
T ss_pred EecccCCCHHHHHHHHHhcCceEEEEecc
Confidence 99999999999999999999999999876
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=126.85 Aligned_cols=219 Identities=12% Similarity=0.078 Sum_probs=135.9
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||+++++.|+++ +.+|+.+.|..+. .+.+.+.+. ....++.++.+|++.+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~-G~~V~~~~r~~~~---~~~~~~~i~---------~~~~~~~~~~~Dl~d~---- 73 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEA-GARVVLSARKAEE---LEEAAAHLE---------ALGIDALWIAADVADE---- 73 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHH---HHHHHHHHH---------hcCCeEEEEEccCCCH----
Confidence 4578999999999999999999876 4678777774321 112222111 1124678899998753
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhccC-----CCccEEEEecc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSFLN-----KIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~~~-----~~k~~~~vST~ 458 (958)
+....+. ..+|+|||+|+..... . .+....++|+.|+.++++.+... +..+|+++||.
T Consensus 74 ---~~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~ 150 (259)
T PRK08213 74 ---ADIERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASV 150 (259)
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECCh
Confidence 3343222 3689999999864221 1 23345679999999999866432 44689999997
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.+...... ..+..+|+.||+..|.+++... ..|+++.+++||.+-.+...+ .+..+
T Consensus 151 ~~~~~~~~~-------------~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~------~~~~~ 211 (259)
T PRK08213 151 AGLGGNPPE-------------VMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRG------TLERL 211 (259)
T ss_pred hhccCCCcc-------------ccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhh------hhHHH
Confidence 654321100 0123589999999999987643 248999999999886543211 12222
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFIN 581 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n 581 (958)
.+... ...|. ..+...+.+++.++.+.... ...|.++++.+
T Consensus 212 ~~~~~--~~~~~----~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~ 254 (259)
T PRK08213 212 GEDLL--AHTPL----GRLGDDEDLKGAALLLASDASKHITGQILAVDG 254 (259)
T ss_pred HHHHH--hcCCC----CCCcCHHHHHHHHHHHhCccccCccCCEEEECC
Confidence 22211 12221 12334677888887776433 22456666654
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-10 Score=124.60 Aligned_cols=203 Identities=16% Similarity=0.115 Sum_probs=133.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|+++ +.+|+.+.|... . .+.+.+.. ...++.++.+|++.+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~-G~~vi~~~r~~~-~----~~~~~~~~---------~~~~~~~~~~D~~~~---- 64 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEA-GADIVGAGRSEP-S----ETQQQVEA---------LGRRFLSLTADLSDI---- 64 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCchH-H----HHHHHHHh---------cCCceEEEECCCCCH----
Confidence 4578999999999999999999976 467887777431 1 12222111 124688889998753
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc----CC-CccEEEEecc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL----NK-IKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~----~~-~k~~~~vST~ 458 (958)
++...+. ..+|+|||+|+..... ..+++...+|+.|+.++++.+.. .+ ..+++++||.
T Consensus 65 ---~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~ 141 (248)
T TIGR01832 65 ---EAIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASM 141 (248)
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecH
Confidence 3333222 4689999999975321 13445677999999999887642 22 3589999998
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
..+.+. .....|+.||+..+.+++..+ ..|+.+++++||.|..+......+..+.
T Consensus 142 ~~~~~~-----------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~---- 200 (248)
T TIGR01832 142 LSFQGG-----------------IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDR---- 200 (248)
T ss_pred HhccCC-----------------CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHH----
Confidence 765421 012369999999999887643 2489999999999876532111111111
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTN 569 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~ 569 (958)
.... ....|. ..|+..+++|++++.+...
T Consensus 201 ~~~~--~~~~~~----~~~~~~~dva~~~~~l~s~ 229 (248)
T TIGR01832 201 NAAI--LERIPA----GRWGTPDDIGGPAVFLASS 229 (248)
T ss_pred HHHH--HhcCCC----CCCcCHHHHHHHHHHHcCc
Confidence 0111 122342 2467889999999988754
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=133.07 Aligned_cols=206 Identities=16% Similarity=0.256 Sum_probs=135.6
Q ss_pred EEEEEcCCchHHHHHHHHHHHcC--CeEEEEecChhh---HHHHHHHhhcC-------C-CcEEEEEecCCCHHH--HHH
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRIDR---LENLKTSLQNA-------P-GSIIVKKLDVTIEND--VKK 782 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~~~---l~~~~~~l~~~-------~-~~~~~~~~Dvs~~~~--v~~ 782 (958)
+++||||+|+||+.++++|+++| ++|+++.|+.+. .+.+.+.+... . .++.++.+|++++.- ...
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 48999999999999999999999 789999998652 22333322211 0 468888999986531 011
Q ss_pred HHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC--
Q psy4557 783 VVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-- 860 (958)
Q Consensus 783 ~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-- 860 (958)
....+ ...+|++|||||..... ..++..+++|+.|+..+++.+.. .+..++|++||.+.....
T Consensus 81 ~~~~~---~~~~d~vih~a~~~~~~-------~~~~~~~~~nv~g~~~ll~~a~~-----~~~~~~v~iSS~~v~~~~~~ 145 (367)
T TIGR01746 81 EWERL---AENVDTIVHNGALVNWV-------YPYSELRAANVLGTREVLRLAAS-----GRAKPLHYVSTISVLAAIDL 145 (367)
T ss_pred HHHHH---HhhCCEEEeCCcEeccC-------CcHHHHhhhhhHHHHHHHHHHhh-----CCCceEEEEccccccCCcCC
Confidence 11222 24699999999975321 23567788999999988876643 223469999998765321
Q ss_pred --------------CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCC-CCChhhh----hh---hc-
Q psy4557 861 --------------AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSH-STDRDVV----DK---YD- 917 (958)
Q Consensus 861 --------------~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~-~~~~~~~----~~---~~- 917 (958)
.....|+.||++.+.+.+..+. .|++++++.||.+..+.... ....... .. ..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~ 221 (367)
T TIGR01746 146 STVTEDDAIVTPPPGLAGGYAQSKWVAELLVREASD----RGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGA 221 (367)
T ss_pred CCccccccccccccccCCChHHHHHHHHHHHHHHHh----cCCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCC
Confidence 1134699999999998876543 38999999999998752211 1111111 00 00
Q ss_pred cc--c--CCCCCCHHHHHHHHHHHhcCCC
Q psy4557 918 IS--K--AVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 918 ~~--~--~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.+ . ...+...+++|++++.++..+.
T Consensus 222 ~p~~~~~~~~~~~vddva~ai~~~~~~~~ 250 (367)
T TIGR01746 222 YPDSPELTEDLTPVDYVARAIVALSSQPA 250 (367)
T ss_pred CCCCCccccCcccHHHHHHHHHHHHhCCC
Confidence 01 1 1225778999999999876654
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.5e-12 Score=147.81 Aligned_cols=102 Identities=25% Similarity=0.442 Sum_probs=95.0
Q ss_pred HHHHhCCCCeEEEeC-CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEecCCCCCC
Q psy4557 21 NQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99 (958)
Q Consensus 21 ~~a~~~pd~~Al~~~-~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vPln~~~~ 99 (958)
.+++.+||++|+.+. +++.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|+|+.++
T Consensus 3 ~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~ 82 (488)
T PRK09088 3 FHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLS 82 (488)
T ss_pred hhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCC
Confidence 467789999999752 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEcccch
Q psy4557 100 PALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 100 ~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
.+++.+++++++++++|+++...
T Consensus 83 ~~~~~~~~~~~~~~~ii~~~~~~ 105 (488)
T PRK09088 83 ASELDALLQDAEPRLLLGDDAVA 105 (488)
T ss_pred HHHHHHHHHhCCCCEEEEcchhh
Confidence 99999999999999999987543
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=145.44 Aligned_cols=101 Identities=26% Similarity=0.364 Sum_probs=95.6
Q ss_pred HHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEecCCCCCC
Q psy4557 20 RNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYP 99 (958)
Q Consensus 20 ~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vPln~~~~ 99 (958)
...++++|+++|+++ +++.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+|+.++
T Consensus 10 ~~~a~~~~~~~a~~~-~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~ 88 (458)
T PRK09029 10 RHWAQVRPQAIALRL-NDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLP 88 (458)
T ss_pred HHHHHhCCCceeeec-CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 456889999999986 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEcccc
Q psy4557 100 PALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 100 ~~~l~~il~~~~~~~vi~~~~~ 121 (958)
.+++.++++++++++++++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~i~~~~~ 110 (458)
T PRK09029 89 QPLLEELLPSLTLDFALVLEGE 110 (458)
T ss_pred HHHHHHHHHhcCCCEEEEcCcc
Confidence 9999999999999999998764
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=147.59 Aligned_cols=105 Identities=27% Similarity=0.387 Sum_probs=97.3
Q ss_pred HHHHHhCCCCeEEEeC-CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEecCCCCC
Q psy4557 20 RNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSY 98 (958)
Q Consensus 20 ~~~a~~~pd~~Al~~~-~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vPln~~~ 98 (958)
...++++||++|+++. +++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|+|+.+
T Consensus 4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~ 83 (511)
T PRK13391 4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL 83 (511)
T ss_pred hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccccc
Confidence 4678889999999752 457899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 99 PPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 99 ~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
+.+++.++++++++++++++....+.
T Consensus 84 ~~~~l~~~l~~~~~~~li~~~~~~~~ 109 (511)
T PRK13391 84 TPAEAAYIVDDSGARALITSAAKLDV 109 (511)
T ss_pred CHHHHHHHHhccCCcEEEEchhhHHH
Confidence 99999999999999999998765443
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=126.62 Aligned_cols=202 Identities=11% Similarity=-0.012 Sum_probs=127.2
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|+||||||+||.+++++|+++ +.+|++..|.... .+.+.+.+.. ...++.++.+|++.+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~-g~~V~~~~r~~~~---~~~~~~~l~~---------~~~~~~~~~~D~~~~------- 61 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWARE-GWRLALADVNEEG---GEETLKLLRE---------AGGDGFYQRCDVRDY------- 61 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHC-CCEEEEEeCCHHH---HHHHHHHHHh---------cCCceEEEEccCCCH-------
Confidence 6899999999999999999876 4678777775321 1222211111 134677889998742
Q ss_pred HHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHh----hccCCCccEEEEecccccC
Q psy4557 401 DEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEF----SFLNKIKSFHYVSTDSIYP 462 (958)
Q Consensus 401 ~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~----a~~~~~k~~~~vST~~v~~ 462 (958)
+....+. ..+|+|||+|+..... ..++....+|+.|+.++.+. +...+..+++++||...+.
T Consensus 62 ~~~~~~~~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~ 141 (270)
T PRK05650 62 SQLTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM 141 (270)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC
Confidence 3333332 3689999999976431 12334567898888776554 4455557899999876543
Q ss_pred CCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHH
Q psy4557 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI 538 (958)
Q Consensus 463 ~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~ 538 (958)
+. .....|+.||..-+.+.+.. ...|+.+++++||.+..+.........+.........
T Consensus 142 ~~-----------------~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~ 204 (270)
T PRK05650 142 QG-----------------PAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKL 204 (270)
T ss_pred CC-----------------CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHHH
Confidence 11 12357999999877666543 3459999999999997664322211111111111111
Q ss_pred HHhCCcCCCCCcCCcccHHHHHHHHHHHhcC
Q psy4557 539 TRLGYAPDIDWYLEFTPVDFLTKSLVQLTTN 569 (958)
Q Consensus 539 ~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~ 569 (958)
. ...+++++++|+.|+.....
T Consensus 205 ~----------~~~~~~~~~vA~~i~~~l~~ 225 (270)
T PRK05650 205 L----------EKSPITAADIADYIYQQVAK 225 (270)
T ss_pred h----------hcCCCCHHHHHHHHHHHHhC
Confidence 0 01246789999999988754
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-10 Score=123.49 Aligned_cols=217 Identities=13% Similarity=0.089 Sum_probs=139.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|+||||+|+||.+|++.|+++ +.+|+++.|.... .+.+.+.+.. ...++.++.+|++.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~-G~~v~~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~Dl~~~---- 68 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEA-GATVAFNDGLAAE---ARELAAALEA---------AGGRAHAIAADLADP---- 68 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHc-CCEEEEEeCCHHH---HHHHHHHHHh---------cCCcEEEEEccCCCH----
Confidence 4578999999999999999999876 4678887664321 1222222111 124788899998742
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCc----cc---ChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNL----IL---PYNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~----~~---~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~ 459 (958)
+....+. ..+|+|||+|+.... .. .++.....|+.|+.++++.+.. .+..+|+++||..
T Consensus 69 ---~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~ 145 (250)
T PRK12939 69 ---ASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDT 145 (250)
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchh
Confidence 3333333 468999999996432 11 2334567899999999887643 2234899999965
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...|.+++..+ ..|++++.++||.+..+..... ...++...+.
T Consensus 146 ~~~~~-----------------~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~-~~~~~~~~~~ 207 (250)
T PRK12939 146 ALWGA-----------------PKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYV-PADERHAYYL 207 (250)
T ss_pred hccCC-----------------CCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCcccccc-CChHHHHHHH
Confidence 43211 112369999999999987632 3589999999998866542111 1112221111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
. ..| ...++++++++++++.+..... -.|+.+++.+.
T Consensus 208 ----~--~~~----~~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg 246 (250)
T PRK12939 208 ----K--GRA----LERLQVPDDVAGAVLFLLSDAARFVTGQLLPVNGG 246 (250)
T ss_pred ----h--cCC----CCCCCCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 1 112 1236789999999999886532 25677777653
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-11 Score=127.51 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=125.7
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|+||||||+||.+++++|+++ +.+|+++.|.... .+.+.+. ...++.++.+|++.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~---~~~~~~~------------~~~~~~~~~~Dl~~~------- 58 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQ-GHKVIATGRRQER---LQELKDE------------LGDNLYIAQLDVRNR------- 58 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHC-CCEEEEEECCHHH---HHHHHHH------------hccceEEEEecCCCH-------
Confidence 6899999999999999999976 4688888875321 1222111 123678889998753
Q ss_pred HHHHHHh-------cccCEEEEcccccCc-----c---cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEeccccc
Q psy4557 401 DEYVSLS-------YEIDMIIHAAAFVNL-----I---LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDSIY 461 (958)
Q Consensus 401 ~~~~~l~-------~~vd~IiH~AA~v~~-----~---~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~v~ 461 (958)
++...+. ..+|+|||+|+.... . ..++....+|+.|+.++++.+ .+.+..+++++||.+.+
T Consensus 59 ~~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~ 138 (248)
T PRK10538 59 AAIEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS 138 (248)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccC
Confidence 3333322 379999999986321 1 123456789999976665543 44555789999986542
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA 537 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~ 537 (958)
.. ......|+.||...|.+.+... ..|+.+.+++||.+.|+.........+ . ..
T Consensus 139 ~~-----------------~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~-~----~~ 196 (248)
T PRK10538 139 WP-----------------YAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGD-D----GK 196 (248)
T ss_pred CC-----------------CCCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCc-H----HH
Confidence 10 0123579999999999886532 358999999999997654211100000 0 00
Q ss_pred HHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc
Q psy4557 538 ITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV 570 (958)
Q Consensus 538 ~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~ 570 (958)
... . .. ...++..+.+|++++.++..+
T Consensus 197 ~~~--~-~~---~~~~~~~~dvA~~~~~l~~~~ 223 (248)
T PRK10538 197 AEK--T-YQ---NTVALTPEDVSEAVWWVATLP 223 (248)
T ss_pred HHh--h-cc---ccCCCCHHHHHHHHHHHhcCC
Confidence 000 0 00 112457899999999987644
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-10 Score=124.13 Aligned_cols=210 Identities=20% Similarity=0.231 Sum_probs=151.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHH--HHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLEN--LKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~--~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|.||||||=||..++++|+++|++|..+.|+++..+. ....++....+...+..|++++++++++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------- 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------- 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh-------
Confidence 78899999999999999999999999999999999887444 345566556678899999999999877775
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC-CC---------
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-AG--------- 862 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-~~--------- 862 (958)
..|+|+|.|........ + .=.++++..+.|+..+.+++.. .+.-.|||++||.++.... +.
T Consensus 78 gcdgVfH~Asp~~~~~~---~--~e~~li~pav~Gt~nVL~ac~~----~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE 148 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLE---D--PEKELIDPAVKGTKNVLEACKK----TKSVKRVVYTSSTAAVRYNGPNIGENSVVDE 148 (327)
T ss_pred CCCEEEEeCccCCCCCC---C--cHHhhhhHHHHHHHHHHHHHhc----cCCcceEEEeccHHHhccCCcCCCCCccccc
Confidence 48999999987543221 1 1137899999999998888754 2223699999999987644 11
Q ss_pred --C----------hhhhHHHHHHHHHHHHHHHHhCCC-CcEEEEEECCcccCCCCCCCCChhh------hhh-hc--ccc
Q psy4557 863 --L----------AVYTGTKYFIEGISGALRQEVSDR-NIKVTCIQAGDVKTELLSHSTDRDV------VDK-YD--ISK 920 (958)
Q Consensus 863 --~----------~~Y~asKaa~~~l~~~la~el~~~-gIrv~~v~PG~v~T~~~~~~~~~~~------~~~-~~--~~~ 920 (958)
| ..|+.||. +++--|.++++. |+....|+||.|--|.......... +.. .. ...
T Consensus 149 ~~wsd~~~~~~~~~~Y~~sK~----lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~~n~ 224 (327)
T KOG1502|consen 149 ESWSDLDFCRCKKLWYALSKT----LAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETYPNF 224 (327)
T ss_pred ccCCcHHHHHhhHHHHHHHHH----HHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccCCCC
Confidence 1 23666664 444455566544 6999999999998886554211111 111 01 111
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 921 AVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 921 ~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
.....+.+|+|.+.++++..|...
T Consensus 225 ~~~~VdVrDVA~AHv~a~E~~~a~ 248 (327)
T KOG1502|consen 225 WLAFVDVRDVALAHVLALEKPSAK 248 (327)
T ss_pred ceeeEeHHHHHHHHHHHHcCcccC
Confidence 233578999999999999988765
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=145.28 Aligned_cols=107 Identities=25% Similarity=0.342 Sum_probs=101.6
Q ss_pred cHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEec
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vP 93 (958)
++.+.+.+++..+|+++|+.+ +++.+||+||.++++++|..|.+.|+++|++|+++++|+.+++++++||+++|++++|
T Consensus 3 ~~~~~l~~~a~~~p~~~~~~~-~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~ 81 (503)
T PRK04813 3 DIIETIEEFAQTQPDFPAYDY-LGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIP 81 (503)
T ss_pred hHHHHHHHHHHhCCCceEEEe-CCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEec
Confidence 467889999999999999986 4678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 94 LETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 94 ln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+|+.++.+++.++++.+++++++++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (503)
T PRK04813 82 VDVSSPAERIEMIIEVAKPSLIIATEEL 109 (503)
T ss_pred CCCCChHHHHHHHHHhcCCCEEEecccc
Confidence 9999999999999999999999998765
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-10 Score=126.37 Aligned_cols=223 Identities=13% Similarity=0.057 Sum_probs=135.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++++|||||+|+||.+++++|+++ +.+|+.+.|.... .+.+.+.+ . ...++.++.+|++.+
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~-G~~v~~~~~~~~~---~~~~~~~~---------~-~~~~~~~~~~Dl~d~---- 78 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKH-GAKVCIVDLQDDL---GQNVCDSL---------G-GEPNVCFFHCDVTVE---- 78 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHH---HHHHHHHh---------c-CCCceEEEEeecCCH----
Confidence 4678999999999999999999876 4678777664221 12221111 0 124788899998742
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc---------cChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEec
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI---------LPYNALYKSNVLATKNLIEFSFL----NKIKSFHYVST 457 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~---------~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST 457 (958)
++...+. ..+|+|||+|+..... ..+....++|+.|+.++++.+.. .+..+++++||
T Consensus 79 ---~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS 155 (280)
T PLN02253 79 ---DDVSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCS 155 (280)
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecC
Confidence 3444333 3689999999975321 12345678999999999887642 22246888877
Q ss_pred ccc-cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHH
Q psy4557 458 DSI-YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNL 532 (958)
Q Consensus 458 ~~v-~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~ 532 (958)
.+. ++. .....|+.||+..|.+++..+ ..|+.+..++||.+..+.........+...
T Consensus 156 ~~~~~~~------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~ 217 (280)
T PLN02253 156 VASAIGG------------------LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTE 217 (280)
T ss_pred hhhcccC------------------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchh
Confidence 543 221 012369999999999997643 348999999999997654211111111011
Q ss_pred HHHHHHHHh--CCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 533 YILKAITRL--GYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 533 ~l~~~~~~~--g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
..+...... ...| + ......+++++++++.+..... -.+.++++...
T Consensus 218 ~~~~~~~~~~~~~~~-l--~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG 268 (280)
T PLN02253 218 DALAGFRAFAGKNAN-L--KGVELTVDDVANAVLFLASDEARYISGLNLMIDGG 268 (280)
T ss_pred hhhhhhHHHhhcCCC-C--cCCCCCHHHHHHHHHhhcCcccccccCcEEEECCc
Confidence 111111110 0111 1 1123568999999998875432 23566666543
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=145.75 Aligned_cols=110 Identities=20% Similarity=0.300 Sum_probs=100.1
Q ss_pred HHHHHHHH-HHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEec
Q psy4557 15 LHYMFRNQ-AKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (958)
Q Consensus 15 l~~~~~~~-a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vP 93 (958)
..+++.++ ++.+||++|+++ +++.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus 6 ~~~~~~~~~~~~~p~~~a~~~-~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~ 84 (508)
T TIGR02262 6 AEDLLDRNVVEGRGGKTAFID-DISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVA 84 (508)
T ss_pred HHHHHHHHHhcccCCceEEEe-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEee
Confidence 34566665 667999999986 4678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 94 LETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 94 ln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
++++++.+++.++++.++++++|++..+.+.+
T Consensus 85 l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~ 116 (508)
T TIGR02262 85 LNTLLTADDYAYMLEDSRARVVFVSGELLPVI 116 (508)
T ss_pred ccCCCCHHHHHHHHHhcCCeEEEEchhhHHHH
Confidence 99999999999999999999999987765443
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-10 Score=126.05 Aligned_cols=181 Identities=16% Similarity=0.130 Sum_probs=114.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||||+||.+++++|+++ +.+|+++.|.... .. ...+.+.... ...++.++.+|++.
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~-G~~vi~~~r~~~~--~~-~~~~~l~~~~-------~~~~~~~~~~Dl~d----- 78 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAK-GAHVVLAVRNLDK--GK-AAAARITAAT-------PGADVTLQELDLTS----- 78 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHH--HH-HHHHHHHHhC-------CCCceEEEECCCCC-----
Confidence 4678999999999999999999977 4688888885322 11 1111111110 02467888999874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-----cChHHHHhhhHHH----HHHHHHhhccCCCccEEEEeccccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-----LPYNALYKSNVLA----TKNLIEFSFLNKIKSFHYVSTDSIY 461 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-----~~~~~~~~~NV~g----t~~ll~~a~~~~~k~~~~vST~~v~ 461 (958)
.+....+. ..+|+|||||+..... ..++..+.+|+.| |+.+++.+...+..+++++||.+.+
T Consensus 79 --~~~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~ 156 (306)
T PRK06197 79 --LASVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHR 156 (306)
T ss_pred --HHHHHHHHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHh
Confidence 23343332 3589999999964322 2334567899999 6667777665555799999998644
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEE--ecCceeccC
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIV--RCGNIGGSL 520 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~--R~g~i~G~~ 520 (958)
......+.+. ....+..+...|+.||+..+.+.+..+ ..|+++.++ .||.|..+.
T Consensus 157 ~~~~~~~~~~----~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 157 IRAAIHFDDL----QWERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred ccCCCCcccc----CcccCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 2111111110 011111234579999999998887532 347776654 799886543
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-11 Score=127.80 Aligned_cols=190 Identities=14% Similarity=0.135 Sum_probs=126.4
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++||||||||+||.+++++|+++ +.+|+++.|... ++.+..... .. ..++.++.+|++.+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~-G~~v~~~~r~~~------~~~~~~~~~------~~-~~~~~~~~~Dl~~~------ 62 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQ-GATLGLVARRTD------ALQAFAARL------PK-AARVSVYAADVRDA------ 62 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHH------HHHHHHHhc------cc-CCeeEEEEcCCCCH------
Confidence 57999999999999999999876 468888887532 222211111 01 12688889998753
Q ss_pred HHHHHHHh-------cccCEEEEcccccCcc--------cChHHHHhhhHHHHHHHHHh----hccCCCccEEEEecccc
Q psy4557 400 QDEYVSLS-------YEIDMIIHAAAFVNLI--------LPYNALYKSNVLATKNLIEF----SFLNKIKSFHYVSTDSI 460 (958)
Q Consensus 400 ~~~~~~l~-------~~vd~IiH~AA~v~~~--------~~~~~~~~~NV~gt~~ll~~----a~~~~~k~~~~vST~~v 460 (958)
+....+. ..+|+|||+|+..... ..+.....+|+.|+.++++. ..+.+..+|+++||...
T Consensus 63 -~~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~ 141 (257)
T PRK07024 63 -DALAAAAADFIAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAG 141 (257)
T ss_pred -HHHHHHHHHHHHhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhh
Confidence 3333332 3489999999965321 12345678999999998763 33444568998988654
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
+... .....|+.||+..|.+++.. ...|++++++|||.+.++....
T Consensus 142 ~~~~-----------------~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~------------- 191 (257)
T PRK07024 142 VRGL-----------------PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH------------- 191 (257)
T ss_pred cCCC-----------------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc-------------
Confidence 3110 12347999999999988653 3459999999999997653110
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcC
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTN 569 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~ 569 (958)
.+. + .-.+++.|.+++.++....+
T Consensus 192 ----~~~-~----~~~~~~~~~~a~~~~~~l~~ 215 (257)
T PRK07024 192 ----NPY-P----MPFLMDADRFAARAARAIAR 215 (257)
T ss_pred ----CCC-C----CCCccCHHHHHHHHHHHHhC
Confidence 000 1 01146889999999988754
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=124.88 Aligned_cols=197 Identities=16% Similarity=0.155 Sum_probs=127.5
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||||+||.+++++|++. +.+|+++.|.... .+++.+.+... ...++.++.+|+...
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~-G~~Vi~~~r~~~~---~~~~~~~l~~~--------~~~~~~~~~~d~~~~---- 74 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARH-GATVILLGRTEEK---LEAVYDEIEAA--------GGPQPAIIPLDLLTA---- 74 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCcEEEEeCCHHH---HHHHHHHHHhc--------CCCCceEEEecccCC----
Confidence 5679999999999999999999976 5689998886422 22332222221 124677788887521
Q ss_pred CcHHHHHH----H---hcccCEEEEcccccCccc--------ChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEecc
Q psy4557 398 KNQDEYVS----L---SYEIDMIIHAAAFVNLIL--------PYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~----l---~~~vd~IiH~AA~v~~~~--------~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~ 458 (958)
+.+.... + ...+|+|||+|+...... .+.....+|+.|+.++++.+ ...+..+|+++||.
T Consensus 75 -~~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~ 153 (247)
T PRK08945 75 -TPQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSS 153 (247)
T ss_pred -CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccH
Confidence 1122222 2 246899999998754321 23456779999988887765 34456789999986
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
...... .....|+.||+..|.++...+ ..|+++++++||.+-.+...+..
T Consensus 154 ~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~--------- 207 (247)
T PRK08945 154 VGRQGR-----------------ANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAF--------- 207 (247)
T ss_pred hhcCCC-----------------CCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhc---------
Confidence 532110 122479999999999887532 34889999999988654321111
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhc
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTT 568 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~ 568 (958)
|.... ..+...+.+++.++.+..
T Consensus 208 ----------~~~~~-~~~~~~~~~~~~~~~~~~ 230 (247)
T PRK08945 208 ----------PGEDP-QKLKTPEDIMPLYLYLMG 230 (247)
T ss_pred ----------Ccccc-cCCCCHHHHHHHHHHHhC
Confidence 11111 134667888999888764
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-10 Score=124.15 Aligned_cols=222 Identities=16% Similarity=0.079 Sum_probs=132.5
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||||+||.++++.|+++ +.+|+.+.|.... .+.+.+.+... ....++.++.+|++.+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~-g~~v~~~~r~~~~---~~~~~~~l~~~-------~~~~~~~~~~~Dl~d~----- 67 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEA-GGIVIAADIDKEA---LNELLESLGKE-------FKSKKLSLVELDITDQ----- 67 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEecChHH---HHHHHHHHHhh-------cCCCceeEEEecCCCH-----
Confidence 468999999999999999999876 4678777775321 11222211110 0123566778998753
Q ss_pred cHHHHHHHhc-------ccCEEEEcccccCc-------ccC---hHHHHhhhHHHHHHHHHhh----ccCCCccEEEEec
Q psy4557 399 NQDEYVSLSY-------EIDMIIHAAAFVNL-------ILP---YNALYKSNVLATKNLIEFS----FLNKIKSFHYVST 457 (958)
Q Consensus 399 ~~~~~~~l~~-------~vd~IiH~AA~v~~-------~~~---~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST 457 (958)
++...+.+ .+|+|||||+.... ..+ +.....+|+.++..+++.+ .+.+.++|+++||
T Consensus 68 --~~~~~~~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 145 (256)
T PRK09186 68 --ESLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISS 145 (256)
T ss_pred --HHHHHHHHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEec
Confidence 44444432 38999999974321 111 3345667888877665544 3345579999999
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
...+........++. +......|+.||...|.+++..+ ..|+.+++++||.+..+.. ..
T Consensus 146 ~~~~~~~~~~~~~~~-------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~------~~---- 208 (256)
T PRK09186 146 IYGVVAPKFEIYEGT-------SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP------EA---- 208 (256)
T ss_pred hhhhccccchhcccc-------ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC------HH----
Confidence 664432111111110 11122369999999998886432 3589999999998865321 11
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
+.+.... ..| ...+++++++|++++.++.... ..+.++++.+
T Consensus 209 ~~~~~~~--~~~----~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~ 252 (256)
T PRK09186 209 FLNAYKK--CCN----GKGMLDPDDICGTLVFLLSDQSKYITGQNIIVDD 252 (256)
T ss_pred HHHHHHh--cCC----ccCCCCHHHhhhhHhheeccccccccCceEEecC
Confidence 1111111 112 2346788999999999876432 2355665543
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-11 Score=131.88 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=113.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++|+||||||+||.+++++|+++ +.+|+++.|... ++.+.... ..++.++.+|++.
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~-G~~Vv~~~R~~~------~~~~~~~~----------l~~v~~~~~Dl~d----- 82 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQA-GAHVIVPARRPD------VAREALAG----------IDGVEVVMLDLAD----- 82 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHH------HHHHHHHH----------hhhCeEEEccCCC-----
Confidence 4578999999999999999999876 468888887532 12211111 0136778889874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-----cChHHHHhhhHHHHHHHHH----hhccCCCccEEEEeccccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-----LPYNALYKSNVLATKNLIE----FSFLNKIKSFHYVSTDSIY 461 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-----~~~~~~~~~NV~gt~~ll~----~a~~~~~k~~~~vST~~v~ 461 (958)
.++...+. ..+|+|||||+..... ..++....+|+.|+..+++ ...+.+..+++++||.+..
T Consensus 83 --~~~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~ 160 (315)
T PRK06196 83 --LESVRAFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHR 160 (315)
T ss_pred --HHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhc
Confidence 23444333 4689999999964321 2345667899999766654 3334444689999997543
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCC
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLE 521 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~ 521 (958)
.... .+. + . ....+..+...|+.||...+.+.+... ..|+.++++|||.+.++..
T Consensus 161 ~~~~-~~~-~-~--~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~ 219 (315)
T PRK06196 161 RSPI-RWD-D-P--HFTRGYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQ 219 (315)
T ss_pred cCCC-Ccc-c-c--CccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCcc
Confidence 2110 111 0 0 001111234579999999998876532 3589999999999988753
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-10 Score=125.39 Aligned_cols=220 Identities=18% Similarity=0.109 Sum_probs=138.0
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.+++++|||||+|+||.+++++|+++ +.+|++..|..+.. ..+.+.+.+.. ...++.++.+|++.+
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~-G~~Vi~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~Dl~~~--- 112 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYARE-GADVAISYLPVEEE-DAQDVKKIIEE---------CGRKAVLLPGDLSDE--- 112 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEecCCcchh-hHHHHHHHHHH---------cCCeEEEEEccCCCH---
Confidence 35678999999999999999999976 46777765543322 12233332221 124677888998753
Q ss_pred CCcHHHHHHH-------hcccCEEEEcccccCcc--------cChHHHHhhhHHHHHHHHHhhccC--CCccEEEEeccc
Q psy4557 397 LKNQDEYVSL-------SYEIDMIIHAAAFVNLI--------LPYNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDS 459 (958)
Q Consensus 397 L~~~~~~~~l-------~~~vd~IiH~AA~v~~~--------~~~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~ 459 (958)
+....+ ...+|++||+|+..... ..+.....+|+.|+.++++.+... ...+++++||.+
T Consensus 113 ----~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~ 188 (294)
T PRK07985 113 ----KFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQ 188 (294)
T ss_pred ----HHHHHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCch
Confidence 333222 24689999999864211 123456789999999999877532 225799999987
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...+.+++..+ .+|+++..++||.|.++.........+....+
T Consensus 189 ~~~~~-----------------~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~- 250 (294)
T PRK07985 189 AYQPS-----------------PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQF- 250 (294)
T ss_pred hccCC-----------------CCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHH-
Confidence 65321 012479999999998886533 35999999999999987532111111111111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
. ...|. -.+.-.+.+|++++.++.... -.+.++++..
T Consensus 251 ---~--~~~~~----~r~~~pedva~~~~fL~s~~~~~itG~~i~vdg 289 (294)
T PRK07985 251 ---G--QQTPM----KRAGQPAELAPVYVYLASQESSYVTAEVHGVCG 289 (294)
T ss_pred ---h--ccCCC----CCCCCHHHHHHHHHhhhChhcCCccccEEeeCC
Confidence 1 12231 123456788999998875432 2355665543
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-10 Score=121.24 Aligned_cols=217 Identities=16% Similarity=0.163 Sum_probs=135.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||+|+||+++++.|++++ .+|+...|.... ..+.+.+.+.. ...++.++..|++.+
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g-~~v~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~Dl~~~---- 67 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADG-FAVAVNYAGSAA--AADELVAEIEA---------AGGRAIAVQADVADA---- 67 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCCCHH--HHHHHHHHHHh---------cCCeEEEEECCCCCH----
Confidence 35689999999999999999998765 466555554321 11222222211 235788889998743
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCc----cc---ChHHHHhhhHHHHHHHHHhhccC--CCccEEEEeccccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNL----IL---PYNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDSIY 461 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~----~~---~~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~v~ 461 (958)
++...+. .++|+|||+|+.... .. .++....+|+.|+.++++.+... ...+++++||...+
T Consensus 68 ---~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~ 144 (245)
T PRK12937 68 ---AAVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIA 144 (245)
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecccc
Confidence 3343333 368999999997542 11 23455679999999998877542 22479999986543
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA 537 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~ 537 (958)
... .....|+.||...|.+++..+ ..|+.+++++||.+-.+...+... ... ...
T Consensus 145 ~~~-----------------~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~-~~~----~~~ 202 (245)
T PRK12937 145 LPL-----------------PGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKS-AEQ----IDQ 202 (245)
T ss_pred CCC-----------------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCC-HHH----HHH
Confidence 210 123579999999999987643 348999999999876543111111 111 111
Q ss_pred HHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 538 ITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 538 ~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
.. ...|- --+..++++++.++.+..... ..+.++++.+
T Consensus 203 ~~--~~~~~----~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~ 242 (245)
T PRK12937 203 LA--GLAPL----ERLGTPEEIAAAVAFLAGPDGAWVNGQVLRVNG 242 (245)
T ss_pred HH--hcCCC----CCCCCHHHHHHHHHHHcCccccCccccEEEeCC
Confidence 11 12221 123467889999888875432 2366777654
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-10 Score=124.00 Aligned_cols=215 Identities=15% Similarity=0.131 Sum_probs=136.3
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++++||||||||+||++++++|.++ +.+|+++.|..... ...++.++.+|++.+
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~r~~~~~---------------------~~~~~~~~~~D~~~~--- 61 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEA-GARVVTTARSRPDD---------------------LPEGVEFVAADLTTA--- 61 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHC-CCEEEEEeCChhhh---------------------cCCceeEEecCCCCH---
Confidence 35678999999999999999999876 56888888753210 123677888998742
Q ss_pred CCcHHHHHHH-------hcccCEEEEcccccCcc---------cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEe
Q psy4557 397 LKNQDEYVSL-------SYEIDMIIHAAAFVNLI---------LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVS 456 (958)
Q Consensus 397 L~~~~~~~~l-------~~~vd~IiH~AA~v~~~---------~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vS 456 (958)
+....+ ...+|+|||+|+..... ..++....+|+.|+.++++.+ .+.+..+++++|
T Consensus 62 ----~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~is 137 (260)
T PRK06523 62 ----EGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVT 137 (260)
T ss_pred ----HHHHHHHHHHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 333222 24689999999854211 124456778999998886654 233446799999
Q ss_pred cccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCc-------
Q psy4557 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNW------- 525 (958)
Q Consensus 457 T~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~------- 525 (958)
|...+... ......|+.||...|.+++..+ ..|+.+.+++||.+..+...+..
T Consensus 138 S~~~~~~~----------------~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~ 201 (260)
T PRK06523 138 SIQRRLPL----------------PESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAA 201 (260)
T ss_pred cccccCCC----------------CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhc
Confidence 87553210 0123579999999999887643 35899999999999876421110
Q ss_pred --ChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCC
Q psy4557 526 --NLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTN 583 (958)
Q Consensus 526 --n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~ 583 (958)
...+....+.+. .+..|. -.+...+.++++++.++... .-.+.++++....
T Consensus 202 ~~~~~~~~~~~~~~---~~~~p~----~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg~ 256 (260)
T PRK06523 202 GTDYEGAKQIIMDS---LGGIPL----GRPAEPEEVAELIAFLASDRAASITGTEYVIDGGT 256 (260)
T ss_pred CCCHHHHHHHHHHH---hccCcc----CCCCCHHHHHHHHHHHhCcccccccCceEEecCCc
Confidence 001111111111 122231 12346788999998887542 2346677776543
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-10 Score=121.70 Aligned_cols=216 Identities=13% Similarity=0.136 Sum_probs=137.5
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|+||||+|+||.++++.|+++ +.+|+++.|... +.. ..+.. .+. ....++.++.+|++.+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~-g~~vi~~~r~~~-~~~-~~~~~---~~~------~~~~~~~~~~~D~~~~------ 64 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLND-GYRVIATYFSGN-DCA-KDWFE---EYG------FTEDQVRLKELDVTDT------ 64 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCcH-HHH-HHHHH---Hhh------ccCCeEEEEEcCCCCH------
Confidence 47999999999999999999876 478999988743 111 11111 111 1135788899998853
Q ss_pred HHHHHHHh-------cccCEEEEcccccCc----ccC---hHHHHhhhHHHHHHHHH----hhccCCCccEEEEeccccc
Q psy4557 400 QDEYVSLS-------YEIDMIIHAAAFVNL----ILP---YNALYKSNVLATKNLIE----FSFLNKIKSFHYVSTDSIY 461 (958)
Q Consensus 400 ~~~~~~l~-------~~vd~IiH~AA~v~~----~~~---~~~~~~~NV~gt~~ll~----~a~~~~~k~~~~vST~~v~ 461 (958)
+....+. ..+|++||+|+.... ..+ ++.....|+.|+.++.+ .....+..+|+++||...+
T Consensus 65 -~~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~ 143 (245)
T PRK12824 65 -EECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGL 143 (245)
T ss_pred -HHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhc
Confidence 3333222 358999999997532 122 23456789999888854 3344455789999987654
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA 537 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~ 537 (958)
... .....|+.||...+.+++..+ ..|+++.+++||.+.++..... . .+. ...
T Consensus 144 ~~~-----------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~-~-~~~----~~~ 200 (245)
T PRK12824 144 KGQ-----------------FGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQM-G-PEV----LQS 200 (245)
T ss_pred cCC-----------------CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhc-C-HHH----HHH
Confidence 311 112369999999988876532 4589999999999987643221 1 111 111
Q ss_pred HHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCC
Q psy4557 538 ITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTN 583 (958)
Q Consensus 538 ~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~ 583 (958)
.. ...| ...+..++.++++++.++... .-.++++++.+..
T Consensus 201 ~~--~~~~----~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~g~ 242 (245)
T PRK12824 201 IV--NQIP----MKRLGTPEEIAAAVAFLVSEAAGFITGETISINGGL 242 (245)
T ss_pred HH--hcCC----CCCCCCHHHHHHHHHHHcCccccCccCcEEEECCCe
Confidence 11 1112 122457788999998887543 2246788887654
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-11 Score=128.36 Aligned_cols=206 Identities=18% Similarity=0.148 Sum_probs=132.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||||+||.++++.|++++ .+|+++.|.... .+.+.+.+.. ...++..+..|++.+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G-~~V~~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~D~~~~---- 66 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAG-ADVVLAARTAER---LDEVAAEIDD---------LGRRALAVPTDITDE---- 66 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeCCHHH---HHHHHHHHHH---------hCCceEEEecCCCCH----
Confidence 35689999999999999999999764 688888875321 2222222211 124678889998742
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCc-----c---cChHHHHhhhHHHHHHHHHhhccC---CCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNL-----I---LPYNALYKSNVLATKNLIEFSFLN---KIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~-----~---~~~~~~~~~NV~gt~~ll~~a~~~---~~k~~~~vST~~ 459 (958)
+....+. ..+|+|||+|+.... . ..+.....+|+.|+..+++.+... ...+|+++||..
T Consensus 67 ---~~~~~~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~ 143 (258)
T PRK07890 67 ---DQCANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMV 143 (258)
T ss_pred ---HHHHHHHHHHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechh
Confidence 3333322 468999999986432 1 123455779999999999887531 225899999875
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcC--------h
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWN--------L 527 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n--------~ 527 (958)
.+.+. .....|+.||...|.+++... ..|+++.++|||.++++...+... .
T Consensus 144 ~~~~~-----------------~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~ 206 (258)
T PRK07890 144 LRHSQ-----------------PKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVT 206 (258)
T ss_pred hccCC-----------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCC
Confidence 43210 123579999999999987643 358999999999999875211100 0
Q ss_pred hHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcC
Q psy4557 528 VDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTN 569 (958)
Q Consensus 528 ~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~ 569 (958)
.+ .+..... ...| .-.+..+++++++++.++..
T Consensus 207 ~~---~~~~~~~--~~~~----~~~~~~~~dva~a~~~l~~~ 239 (258)
T PRK07890 207 VE---QIYAETA--ANSD----LKRLPTDDEVASAVLFLASD 239 (258)
T ss_pred HH---HHHHHHh--hcCC----ccccCCHHHHHHHHHHHcCH
Confidence 00 0011000 0111 12367889999999888753
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-10 Score=122.06 Aligned_cols=205 Identities=15% Similarity=0.133 Sum_probs=130.3
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||||+||.++++.|+++ +.+|+++.|..... . ...++.+|++.+
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~-G~~v~~~~r~~~~~---------------------~--~~~~~~~D~~~~----- 53 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANL-GHQVIGIARSAIDD---------------------F--PGELFACDLADI----- 53 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC-CCEEEEEeCCcccc---------------------c--CceEEEeeCCCH-----
Confidence 367999999999999999999876 47888888864320 0 013567787642
Q ss_pred cHHHHHHHhc------ccCEEEEcccccCccc----C---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccccc
Q psy4557 399 NQDEYVSLSY------EIDMIIHAAAFVNLIL----P---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSIY 461 (958)
Q Consensus 399 ~~~~~~~l~~------~vd~IiH~AA~v~~~~----~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v~ 461 (958)
+....+.. .+|+|||+|+...... + +.....+|+.|+.++.+.+. ..+..+++++||.+++
T Consensus 54 --~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~ 131 (234)
T PRK07577 54 --EQTAATLAQINEIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIF 131 (234)
T ss_pred --HHHHHHHHHHHHhCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcccccc
Confidence 33333332 5899999999754321 2 23456789999888866543 3455789999998765
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA 537 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~ 537 (958)
+.. ....|+.||...|.+++.. ...|+.++++|||.+..+......+..+.. ...
T Consensus 132 ~~~------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~---~~~ 190 (234)
T PRK07577 132 GAL------------------DRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEE---EKR 190 (234)
T ss_pred CCC------------------CchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhH---HHH
Confidence 421 1247999999999888653 245999999999998765421111111111 011
Q ss_pred HHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 538 ITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 538 ~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
.. ...|. -.+...+.++++++.+..... ..+.++.+.+
T Consensus 191 ~~--~~~~~----~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g 230 (234)
T PRK07577 191 VL--ASIPM----RRLGTPEEVAAAIAFLLSDDAGFITGQVLGVDG 230 (234)
T ss_pred Hh--hcCCC----CCCcCHHHHHHHHHHHhCcccCCccceEEEecC
Confidence 11 11121 123467889999998875432 2356666643
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=118.15 Aligned_cols=164 Identities=19% Similarity=0.186 Sum_probs=115.1
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++++||||||++|.++++.|++++...|+++.|............+.+.. ...++.++..|++.+
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~---------~~~~~~~~~~D~~~~------ 65 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEA---------LGAEVTVVACDVADR------ 65 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHh---------cCCeEEEEECCCCCH------
Confidence 36899999999999999999877655788888865432221111111111 134677888998742
Q ss_pred HHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccc-cCCC
Q psy4557 400 QDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSI-YPST 464 (958)
Q Consensus 400 ~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v-~~~~ 464 (958)
+.+..+. ..+|.|||+|+..... ..++....+|+.|+.++++.+...+.++++++||.+. ++.
T Consensus 66 -~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~~- 143 (180)
T smart00822 66 -AALAAALAAIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLGN- 143 (180)
T ss_pred -HHHHHHHHHHHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcCC-
Confidence 3333332 3479999999965421 2245567899999999999987777788999988643 221
Q ss_pred CCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCcee
Q psy4557 465 SENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIG 517 (958)
Q Consensus 465 ~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~ 517 (958)
.....|+.||...+.++......|++++.+.||.+-
T Consensus 144 -----------------~~~~~y~~sk~~~~~~~~~~~~~~~~~~~~~~g~~~ 179 (180)
T smart00822 144 -----------------PGQANYAAANAFLDALAAHRRARGLPATSINWGAWA 179 (180)
T ss_pred -----------------CCchhhHHHHHHHHHHHHHHHhcCCceEEEeecccc
Confidence 112479999999999997777789999999988654
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-11 Score=130.26 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=109.9
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|+||||+|+||.+++++|+++ +.+|++..|.... .+.+. ..++.++.+|++.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~-G~~Vi~~~r~~~~---~~~l~---------------~~~~~~~~~Dl~d~----- 59 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSD-GWRVFATCRKEED---VAALE---------------AEGLEAFQLDYAEP----- 59 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHH---HHHHH---------------HCCceEEEccCCCH-----
Confidence 357999999999999999998875 5788888885321 11221 12466788898742
Q ss_pred cHHHHHHHh--------cccCEEEEcccccCcc----cC---hHHHHhhhHHH----HHHHHHhhccCCCccEEEEeccc
Q psy4557 399 NQDEYVSLS--------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLA----TKNLIEFSFLNKIKSFHYVSTDS 459 (958)
Q Consensus 399 ~~~~~~~l~--------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~g----t~~ll~~a~~~~~k~~~~vST~~ 459 (958)
+....+. ..+|+|||||+..... .+ +.....+|+.| +++++..+.+.+..+++++||..
T Consensus 60 --~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~ 137 (277)
T PRK05993 60 --ESIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSIL 137 (277)
T ss_pred --HHHHHHHHHHHHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChh
Confidence 3333322 3689999999865331 12 23467799999 66677777666667899999864
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceecc
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGS 519 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~ 519 (958)
.+.+. .....|+.||+..|.+++.. ...|+.++++|||.+-.+
T Consensus 138 ~~~~~-----------------~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 138 GLVPM-----------------KYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred hcCCC-----------------CccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 33210 12357999999999988653 346999999999988644
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=6e-11 Score=128.43 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=135.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++|+||||+|+||+++++.|++++ .+|+++.|.... ..+.... ...++.++.+|++.+.- +
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g-~~v~~~~~~~~~------~~~~~~~---------~~~~~~~~~~Dl~~~~~-~ 71 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEG-WQVVLADLDRER------GSKVAKA---------LGENAWFIAMDVADEAQ-V 71 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcC-CEEEEEcCCHHH------HHHHHHH---------cCCceEEEEccCCCHHH-H
Confidence 56789999999999999999999764 688877664321 1111111 12467888999885310 0
Q ss_pred CcHHHHHHHh---cccCEEEEcccccCcc---------cChHHHHhhhHHHHHHHHHhhcc---CCCccEEEEecccccC
Q psy4557 398 KNQDEYVSLS---YEIDMIIHAAAFVNLI---------LPYNALYKSNVLATKNLIEFSFL---NKIKSFHYVSTDSIYP 462 (958)
Q Consensus 398 ~~~~~~~~l~---~~vd~IiH~AA~v~~~---------~~~~~~~~~NV~gt~~ll~~a~~---~~~k~~~~vST~~v~~ 462 (958)
...++.+. ..+|+|||+|+..... ..+....++|+.|+.++++.+.. ....+++++||...+.
T Consensus 72 --~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~ 149 (255)
T PRK05717 72 --AAGVAEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQ 149 (255)
T ss_pred --HHHHHHHHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcC
Confidence 01122222 3589999999975421 11345678999999999998852 2225788998865432
Q ss_pred CCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-h--CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHH
Q psy4557 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-Q--MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAIT 539 (958)
Q Consensus 463 ~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~--~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~ 539 (958)
.. ...+.|+.||...|.+++... + .++++..++||.+.++...... ... +...
T Consensus 150 ~~-----------------~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~-~~~----~~~~-- 205 (255)
T PRK05717 150 SE-----------------PDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRR-AEP----LSEA-- 205 (255)
T ss_pred CC-----------------CCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCcccccc-chH----HHHH--
Confidence 11 012469999999999987643 3 2589999999999876422211 110 1000
Q ss_pred HhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 540 RLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 540 ~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
..+..|. ..+..++.++.+++.+..... ..+.++++..
T Consensus 206 ~~~~~~~----~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~g 245 (255)
T PRK05717 206 DHAQHPA----GRVGTVEDVAAMVAWLLSRQAGFVTGQEFVVDG 245 (255)
T ss_pred HhhcCCC----CCCcCHHHHHHHHHHHcCchhcCccCcEEEECC
Confidence 0112232 234577889999888775332 2356676643
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-11 Score=148.41 Aligned_cols=108 Identities=34% Similarity=0.673 Sum_probs=102.3
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
..+++..|.+++...|+++|+.. .+.++||+||+.+++++|+.|++.|+++|++|+++++++++++++++|++|+|+.|
T Consensus 226 ~~~i~~~f~~~a~~~p~~~a~~~-~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~y 304 (642)
T COG1020 226 RLTIHLLFEEQAATTPDAVALVR-GGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAY 304 (642)
T ss_pred cchHHHHHHHHHHhCCCceeEec-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeE
Confidence 45799999999999999999975 35789999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEccc
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGE 120 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~ 120 (958)
||+||.+|.+|+.+++++++++++++...
T Consensus 305 vP~d~~~P~~r~~~~l~~~~~~~~~~~~~ 333 (642)
T COG1020 305 VPLDPLYPAERLAYILEDSRPTLLLTQAH 333 (642)
T ss_pred ecCCCCChHHHHHHHHhhcCccEEEeccc
Confidence 99999999999999999999999999843
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-10 Score=121.79 Aligned_cols=214 Identities=15% Similarity=0.115 Sum_probs=134.9
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEe-ccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCP-VRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~cl-vR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++||||||||+||.+|++.|+++ +.+|+.+ .|.... .+.+.+.+.. ...++.++.+|++.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~D~~~~---- 67 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE-GAKVVIAYDINEEA---AQELLEEIKE---------EGGDAIAVKADVSSE---- 67 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCCCHHH---HHHHHHHHHh---------cCCeEEEEECCCCCH----
Confidence 468999999999999999999866 5677776 664321 1222222211 134688899998753
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
+....+. ..+|+|||+|+..... ..++....+|+.|+.++++.+. ..+.++|+++||.+
T Consensus 68 ---~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~ 144 (247)
T PRK05565 68 ---EDVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIW 144 (247)
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHh
Confidence 3333332 2799999999976321 1234567789999888877654 23446799999865
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...+.+++.. ...|++++++|||.+..+...... .. ....+
T Consensus 145 ~~~~~-----------------~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~-~~-~~~~~- 204 (247)
T PRK05565 145 GLIGA-----------------SCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFS-EE-DKEGL- 204 (247)
T ss_pred hccCC-----------------CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccC-hH-HHHHH-
Confidence 54211 11236999999888777653 245999999999998655432211 11 11111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFIN 581 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n 581 (958)
.. ..| ...+...|.+++.++.+.... .-.++++++.+
T Consensus 205 ---~~--~~~----~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~ 243 (247)
T PRK05565 205 ---AE--EIP----LGRLGKPEEIAKVVLFLASDDASYITGQIITVDG 243 (247)
T ss_pred ---Hh--cCC----CCCCCCHHHHHHHHHHHcCCccCCccCcEEEecC
Confidence 11 112 123457799999999887543 22456777665
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-10 Score=121.98 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=132.9
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||||+||.++++.|++++ ..|+...|... ++.+.... ...++.++.+|++.
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g-~~v~~~~~~~~------~~~~~~~~---------~~~~~~~~~~D~~~----- 63 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQG-AIVGLHGTRVE------KLEALAAE---------LGERVKIFPANLSD----- 63 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHH------HHHHHHHH---------hCCceEEEEccCCC-----
Confidence 35689999999999999999998765 46666555322 12211111 12467788889874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~ 459 (958)
.+..+.+. ..+|+|||||+..... ..++....+|+.|+.++++.+.. .+..+|+|+||.+
T Consensus 64 --~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 141 (245)
T PRK12936 64 --RDEVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVV 141 (245)
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHH
Confidence 34444432 3689999999975321 23455678999999988876532 3446899999864
Q ss_pred c-cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 460 I-YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 460 v-~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
. ++.. ....|+.||...+.+++... ..|+++++++||.+..+... .+...
T Consensus 142 ~~~~~~------------------~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~-~~~~~------ 196 (245)
T PRK12936 142 GVTGNP------------------GQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTG-KLNDK------ 196 (245)
T ss_pred hCcCCC------------------CCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhc-ccChH------
Confidence 3 3311 12369999998887776532 35899999999977543211 11110
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.+.. ..+..| ...+...+.++++++.++.... ..++++++.+.
T Consensus 197 ~~~~-~~~~~~----~~~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK12936 197 QKEA-IMGAIP----MKRMGTGAEVASAVAYLASSEAAYVTGQTIHVNGG 241 (245)
T ss_pred HHHH-HhcCCC----CCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 0110 112222 1224568889999987775432 24778888754
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-10 Score=122.33 Aligned_cols=216 Identities=13% Similarity=0.087 Sum_probs=130.6
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++||||||+||||.+++++|++++ .+|++..+... + ..+.....+.. ...++.++.+|++.+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g-~~v~~~~~~~~-~-~~~~~~~~~~~---------~~~~~~~~~~D~~d~------ 63 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEG-YTVAVNYQQNL-H-AAQEVVNLITQ---------AGGKAFVLQADISDE------ 63 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCCh-H-HHHHHHHHHHh---------CCCeEEEEEccCCCH------
Confidence 469999999999999999999764 56665433221 1 11122211111 124577889998743
Q ss_pred HHHHHHHh-------cccCEEEEcccccCccc--------ChHHHHhhhHHHHHHHHHhhccC-------CCccEEEEec
Q psy4557 400 QDEYVSLS-------YEIDMIIHAAAFVNLIL--------PYNALYKSNVLATKNLIEFSFLN-------KIKSFHYVST 457 (958)
Q Consensus 400 ~~~~~~l~-------~~vd~IiH~AA~v~~~~--------~~~~~~~~NV~gt~~ll~~a~~~-------~~k~~~~vST 457 (958)
+..+.+. ..+|+|||+|+...... .++....+|+.|+..+++.+... +..+|+++||
T Consensus 64 -~~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS 142 (247)
T PRK09730 64 -NQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSS 142 (247)
T ss_pred -HHHHHHHHHHHHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence 4444433 35789999998642211 12356778999998777654321 1246999998
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
...+.... .....|+.||...|.+++..+ +.|++++++|||.++++....... .+....
T Consensus 143 ~~~~~~~~----------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~-~~~~~~ 205 (247)
T PRK09730 143 AASRLGAP----------------GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGE-PGRVDR 205 (247)
T ss_pred hhhccCCC----------------CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCC-HHHHHH
Confidence 75432110 011259999999998886532 359999999999999986432211 111111
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
. .+..|-. .+...++++++++.++.... ..+.+|++.+
T Consensus 206 ----~--~~~~~~~----~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 245 (247)
T PRK09730 206 ----V--KSNIPMQ----RGGQPEEVAQAIVWLLSDKASYVTGSFIDLAG 245 (247)
T ss_pred ----H--HhcCCCC----CCcCHHHHHHHHHhhcChhhcCccCcEEecCC
Confidence 1 1122311 12367999999998876432 3355666543
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.5e-10 Score=121.57 Aligned_cols=216 Identities=14% Similarity=0.070 Sum_probs=134.9
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||+||||.++++.|+++ +++|+.+.|.... .+.+.+.+.. ...++.++.+|++.
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~-G~~Vi~~~r~~~~---~~~~~~~l~~---------~~~~~~~~~~D~~~----- 70 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEA-GADVLIAARTESQ---LDEVAEQIRA---------AGRRAHVVAADLAH----- 70 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHH---HHHHHHHHHh---------cCCcEEEEEccCCC-----
Confidence 4678999999999999999999976 4688888885321 2222222211 12467888899874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc-----CCCccEEEEecc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL-----NKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~-----~~~k~~~~vST~ 458 (958)
.+....+. ..+|+|||+|+..... ..+.....+|+.|+.++++.+.. .+..+++++||.
T Consensus 71 --~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~ 148 (263)
T PRK07814 71 --PEATAGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISST 148 (263)
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccc
Confidence 23333322 3689999999864321 12445678999999999998753 344679999985
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhh---CCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ---MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~---~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.-... ......|+.||+..|.+++.... .++.++.++||.+..+.. +.......+ .
T Consensus 149 ~~~~~-----------------~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~-~~~~~~~~~---~ 207 (263)
T PRK07814 149 MGRLA-----------------GRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSAL-EVVAANDEL---R 207 (263)
T ss_pred cccCC-----------------CCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchh-hhccCCHHH---H
Confidence 32110 01235799999999999876432 257888999998864421 111111111 1
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEec
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFI 580 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~ 580 (958)
... .+..|- ..+...+.+|++++.+.... ...+..+++.
T Consensus 208 ~~~--~~~~~~----~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~ 248 (263)
T PRK07814 208 APM--EKATPL----RRLGDPEDIAAAAVYLASPAGSYLTGKTLEVD 248 (263)
T ss_pred HHH--HhcCCC----CCCcCHHHHHHHHHHHcCccccCcCCCEEEEC
Confidence 111 112221 12457899999999987542 2245566654
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-10 Score=122.23 Aligned_cols=213 Identities=11% Similarity=0.052 Sum_probs=136.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|++++ .+|+.+.|..... .+...+ ...++.++..|++.+
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G-~~Vi~~~r~~~~~----~~~~~~-----------~~~~~~~~~~Dl~~~---- 73 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKG-ARVALLDRSEDVA----EVAAQL-----------LGGNAKGLVCDVSDS---- 73 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH----HHHHHh-----------hCCceEEEEecCCCH----
Confidence 46789999999999999999998764 6788777753211 111110 013566788898742
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhcc----CCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~ 459 (958)
++...+. ..+|+|||+|+..... .+ +.....+|+.|+.++++.+.. .+..+|+++||..
T Consensus 74 ---~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 150 (255)
T PRK06841 74 ---QSVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQA 150 (255)
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchh
Confidence 3333332 3689999999975431 12 234567899999999987653 2446899999865
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
..... .....|+.||...|.+.+..+ ..|+.+..++||.+..+.....|+... .
T Consensus 151 ~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~-~---- 208 (255)
T PRK06841 151 GVVAL-----------------ERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAGEK-G---- 208 (255)
T ss_pred hccCC-----------------CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccchhH-H----
Confidence 32110 112479999999998887633 358999999999987654222222110 0
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCC--CCceEEecC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNN--ANKIYNFIN 581 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~--~~~v~h~~n 581 (958)
. ... ...| ...+.+.+.++++++.++..... .|.++++..
T Consensus 209 ~-~~~-~~~~----~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~~dg 250 (255)
T PRK06841 209 E-RAK-KLIP----AGRFAYPEEIAAAALFLASDAAAMITGENLVIDG 250 (255)
T ss_pred H-HHH-hcCC----CCCCcCHHHHHHHHHHHcCccccCccCCEEEECC
Confidence 0 011 1223 12467899999999998864322 456666654
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-10 Score=121.98 Aligned_cols=216 Identities=15% Similarity=0.089 Sum_probs=134.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||..+++.|+++ +.+|+.+.|... .+++.+.+.. ...++.++.+|++.+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~~~~~----~~~~~~~~~~---------~~~~~~~~~~D~~~~---- 75 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKA-GADIIITTHGTN----WDETRRLIEK---------EGRKVTFVQVDLTKP---- 75 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCcH----HHHHHHHHHh---------cCCceEEEEcCCCCH----
Confidence 4679999999999999999999876 467777777522 1222222211 124678889998752
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCc----cc---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNL----IL---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~----~~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
+....+. ..+|++||+|+.... .. .++....+|+.|+..+++.+. ..+..+++++||..
T Consensus 76 ---~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~ 152 (258)
T PRK06935 76 ---ESAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASML 152 (258)
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 3444333 368999999997532 11 234556789999877765543 34456899999976
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+.+. .....|+.||...|.+++..+ .+|+.+++++||.+..+.........+....+
T Consensus 153 ~~~~~-----------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~- 214 (258)
T PRK06935 153 SFQGG-----------------KFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEI- 214 (258)
T ss_pred hccCC-----------------CCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHH-
Confidence 64321 112379999999999987643 35899999999998765321111111111111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
....|. -.+...+.+++.++.++.... -.+.++++..
T Consensus 215 -----~~~~~~----~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dg 253 (258)
T PRK06935 215 -----LKRIPA----GRWGEPDDLMGAAVFLASRASDYVNGHILAVDG 253 (258)
T ss_pred -----HhcCCC----CCCCCHHHHHHHHHHHcChhhcCCCCCEEEECC
Confidence 112232 124555778888887775332 2455665543
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=128.09 Aligned_cols=163 Identities=10% Similarity=-0.013 Sum_probs=107.6
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+++||||||+||||++|+++|+++ +.+|+++.|... ..+++.+.+.. ...++.++.+|++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~-G~~V~~~~r~~~---~~~~~~~~~~~---------~~~~~~~~~~D~~d------ 66 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL-GMKLVLADVQQD---ALDRAVAELRA---------QGAEVLGVRTDVSD------ 66 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEeCChH---HHHHHHHHHHh---------cCCeEEEEECCCCC------
Confidence 468999999999999999999876 468888877432 12222221111 12467889999874
Q ss_pred cHHHHHHHhc-------ccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhh----ccCC------CccEEE
Q psy4557 399 NQDEYVSLSY-------EIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFS----FLNK------IKSFHY 454 (958)
Q Consensus 399 ~~~~~~~l~~-------~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a----~~~~------~k~~~~ 454 (958)
.++...+.. .+|+|||+|+..... .+ +....++|+.|+.++++.+ .+.. ..++++
T Consensus 67 -~~~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~ 145 (287)
T PRK06194 67 -AAQVEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVN 145 (287)
T ss_pred -HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Confidence 244444433 589999999986431 22 2345779999999966553 2222 147999
Q ss_pred EecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-h-----CCCCEEEEecCceec
Q psy4557 455 VSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-Q-----MGLPVSIVRCGNIGG 518 (958)
Q Consensus 455 vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~-----~glp~~I~R~g~i~G 518 (958)
+||.+.+... .....|+.||+..|.+++..+ + .++.+..+.||.|..
T Consensus 146 ~sS~~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t 198 (287)
T PRK06194 146 TASMAGLLAP-----------------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPT 198 (287)
T ss_pred eCChhhccCC-----------------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccC
Confidence 9997665321 123479999999999987643 2 246667777877643
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-10 Score=121.11 Aligned_cols=215 Identities=10% Similarity=0.051 Sum_probs=137.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++++|||||+|+||.++++.|++++ .+|++..|.... .+...+.+. ....++.++.+|++.+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G-~~vi~~~r~~~~---~~~~~~~~~---------~~~~~~~~~~~D~~~~---- 66 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKG-AKLALIDLNQEK---LEEAVAECG---------ALGTEVRGYAANVTDE---- 66 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHH---HHHHHHHHH---------hcCCceEEEEcCCCCH----
Confidence 35689999999999999999998764 578887775321 111111111 1134678888998753
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCc-------------c---cChHHHHhhhHHHHHHHHHhhc-----cCCC
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNL-------------I---LPYNALYKSNVLATKNLIEFSF-----LNKI 449 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~-------------~---~~~~~~~~~NV~gt~~ll~~a~-----~~~~ 449 (958)
+....+. ..+|+|||+|+.... . ..+.....+|+.|+.++++.+. ....
T Consensus 67 ---~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~ 143 (253)
T PRK08217 67 ---EDVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSK 143 (253)
T ss_pred ---HHHHHHHHHHHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC
Confidence 2332222 358999999986431 0 1223456789999987765432 1122
Q ss_pred ccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCc
Q psy4557 450 KSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNW 525 (958)
Q Consensus 450 k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~ 525 (958)
..++++||.+.++.. ....|+.||...|.+++..+ ..|++++.++||.+.++.....
T Consensus 144 ~~iv~~ss~~~~~~~------------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~- 204 (253)
T PRK08217 144 GVIINISSIARAGNM------------------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAM- 204 (253)
T ss_pred eEEEEEccccccCCC------------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc-
Confidence 468999987765421 13469999999999887643 3589999999999987653221
Q ss_pred ChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCC
Q psy4557 526 NLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINT 582 (958)
Q Consensus 526 n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~ 582 (958)
. .++ .+.... ..| ...+..++.+++++..++....-.+.+|++.+.
T Consensus 205 ~-~~~----~~~~~~--~~~----~~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~gg 250 (253)
T PRK08217 205 K-PEA----LERLEK--MIP----VGRLGEPEEIAHTVRFIIENDYVTGRVLEIDGG 250 (253)
T ss_pred C-HHH----HHHHHh--cCC----cCCCcCHHHHHHHHHHHHcCCCcCCcEEEeCCC
Confidence 1 111 111111 112 123467889999999988655446788888764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 958 | ||||
| 3tfo_A | 264 | Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Car | 2e-38 | ||
| 3p19_A | 266 | Improved Nadph-Dependent Blue Fluorescent Protein L | 5e-33 | ||
| 2jap_A | 247 | Clavulanic Acid Dehydrogenase: Structural And Bioch | 1e-29 | ||
| 3asu_A | 248 | Crystal Structure Of Serine Dehydrogenase From Esch | 7e-29 | ||
| 3rkr_A | 262 | Crystal Structure Of A Metagenomic Short-Chain Oxid | 5e-28 | ||
| 2jah_A | 247 | Biochemical And Structural Analysis Of The Clavulan | 2e-27 | ||
| 1xg5_A | 279 | Structure Of Human Putative Dehydrogenase Mgc4172 I | 5e-26 | ||
| 2ehd_A | 234 | Crystal Structure Analysis Of Oxidoreductase Length | 7e-24 | ||
| 2uvd_A | 246 | The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier | 7e-23 | ||
| 4dqv_A | 478 | Crystal Structure Of Reductase (R) Domain Of Non-Ri | 8e-23 | ||
| 2nwq_A | 272 | Short Chain Dehydrogenase From Pseudomonas Aerugino | 2e-22 | ||
| 1i01_A | 244 | Crystal Structure Of Beta-Ketoacyl [acyl Carrier Pr | 4e-21 | ||
| 3oec_A | 317 | Crystal Structure Of Carveol Dehydrogenase From Myc | 4e-21 | ||
| 1q7c_A | 244 | The Structure Of Betaketoacyl-[acp] Reductase Y151f | 1e-20 | ||
| 3sj7_A | 252 | Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) F | 2e-20 | ||
| 3enn_A | 249 | 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN | 6e-20 | ||
| 3emk_A | 246 | 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN | 6e-20 | ||
| 3tzh_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 7e-20 | ||
| 3ftp_A | 270 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 7e-20 | ||
| 3rsh_A | 251 | Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reduc | 1e-19 | ||
| 2hq1_A | 247 | Crystal Structure Of Orf 1438 A Putative GlucoseRIB | 2e-19 | ||
| 3tzc_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 3e-19 | ||
| 3osu_A | 246 | Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Pro | 3e-19 | ||
| 4afn_A | 269 | Crystal Structure Of 3-ketoacyl-(acyl-carrier-prote | 3e-19 | ||
| 1edo_A | 244 | The X-Ray Structure Of Beta-Keto Acyl Carrier Prote | 3e-19 | ||
| 3ioy_A | 319 | Structure Of Putative Short-Chain Dehydrogenase (Sa | 4e-19 | ||
| 4dml_A | 269 | 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Syn | 5e-19 | ||
| 3tzk_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 6e-19 | ||
| 3u09_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 1e-18 | ||
| 3m1a_A | 281 | The Crystal Structure Of A Short-Chain Dehydrogenas | 1e-18 | ||
| 2cf2_E | 226 | Architecture Of Mammalian Fatty Acid Synthase Lengt | 3e-18 | ||
| 3grp_A | 266 | 2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl- | 5e-18 | ||
| 4fn4_A | 254 | Short-chain Nad(h)-dependent Dehydrogenase/reductas | 7e-18 | ||
| 3op4_A | 248 | Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carr | 1e-17 | ||
| 1wmb_A | 260 | Crystal Structure Of Nad Dependent D-3-Hydroxybutyl | 1e-17 | ||
| 3ai1_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 1e-17 | ||
| 2b4q_A | 276 | Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex | 2e-17 | ||
| 3qiv_A | 253 | Crystal Structure Of A Putative Short-Chain Dehydro | 2e-17 | ||
| 3o4r_A | 261 | Crystal Structure Of Human DehydrogenaseREDUCTASE ( | 2e-17 | ||
| 3ezl_A | 256 | Crystal Structure Of Acetyacetyl-Coa Reductase From | 2e-17 | ||
| 1nff_A | 260 | Crystal Structure Of Rv2002 Gene Product From Mycob | 3e-17 | ||
| 2ztm_A | 260 | T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase L | 3e-17 | ||
| 3rku_A | 287 | Substrate Fingerprint And The Structure Of Nadp+ De | 4e-17 | ||
| 3ai3_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 4e-17 | ||
| 2bd0_A | 244 | Chlorobium Tepidum Sepiapterin Reductase Complexed | 5e-17 | ||
| 2ztu_A | 260 | T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase C | 5e-17 | ||
| 2c07_A | 285 | Oxoacyl-Acp Reductase Of Plasmodium Falciparum Leng | 1e-16 | ||
| 2y93_A | 281 | Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2 | 1e-16 | ||
| 3v2g_A | 271 | Crystal Structure Of A DehydrogenaseREDUCTASE FROM | 1e-16 | ||
| 1bdb_A | 277 | Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From | 3e-16 | ||
| 1rwb_A | 261 | Cooperative Effect Of Two Surface Amino Acid Mutati | 3e-16 | ||
| 1g6k_A | 261 | Crystal Structure Of Glucose Dehydrogenase Mutant E | 3e-16 | ||
| 1gee_A | 261 | Crystal Structure Of Glucose Dehydrogenase Mutant Q | 4e-16 | ||
| 1gco_A | 261 | Crystal Structure Of Glucose Dehydrogenase Complexe | 4e-16 | ||
| 3v2h_A | 281 | The Crystal Structure Of D-Beta-Hydroxybutyrate Deh | 5e-16 | ||
| 2zat_A | 260 | Crystal Structure Of A Mammalian Reductase Length = | 7e-16 | ||
| 2pnf_A | 248 | Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl- | 9e-16 | ||
| 2yz7_A | 260 | X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase F | 1e-15 | ||
| 1nfr_A | 260 | Rv2002 Gene Product From Mycobacterium Tuberculosis | 1e-15 | ||
| 2hsd_A | 253 | The Refined Three-Dimensional Structure Of 3alpha,2 | 2e-15 | ||
| 2q2q_A | 255 | Structure Of D-3-Hydroxybutyrate Dehydrogenase From | 2e-15 | ||
| 3n74_A | 261 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 2e-15 | ||
| 1hdc_A | 254 | Mechanism Of Inhibition Of 3alpha,20beta-Hydroxyste | 2e-15 | ||
| 3lyl_A | 247 | Structure Of 3-Oxoacyl-Acylcarrier Protein Reductas | 2e-15 | ||
| 3gk3_A | 269 | Crystal Structure Of Acetoacetyl-Coa Reductase From | 4e-15 | ||
| 3pgx_A | 280 | Crystal Structure Of A Putative Carveol Dehydrogena | 4e-15 | ||
| 1yxm_A | 303 | Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa | 5e-15 | ||
| 3tjr_A | 301 | Crystal Structure Of A Rv0851c Ortholog Short Chain | 6e-15 | ||
| 3r1i_A | 276 | Crystal Structure Of A Short-Chain Type Dehydrogena | 1e-14 | ||
| 1geg_A | 256 | Cryatal Structure Analysis Of Meso-2,3-Butanediol D | 1e-14 | ||
| 3ay6_A | 269 | Crystal Structure Of Bacillus Megaterium Glucose De | 1e-14 | ||
| 3aus_A | 269 | Crystal Structure Of Bacillus Megaterium Glucose De | 1e-14 | ||
| 3ay7_A | 269 | Crystal Structure Of Bacillus Megaterium Glucose De | 2e-14 | ||
| 3u5t_A | 267 | The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr | 2e-14 | ||
| 3e9n_A | 245 | Crystal Structure Of A Putative Short-Chain Dehydro | 2e-14 | ||
| 2et6_A | 604 | (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candid | 2e-14 | ||
| 4f6l_B | 508 | Crystal Structure Of Aureusimine Biosynthetic Clust | 3e-14 | ||
| 4iin_A | 271 | Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Car | 3e-14 | ||
| 1k2w_A | 256 | Crystal Structure Of Sorbitol Dehydrogenase From R. | 4e-14 | ||
| 3csd_B | 281 | Actinorhodin Polyketide Ketoreductase Mutant P94l B | 9e-14 | ||
| 2rhr_B | 277 | P94l Actinorhodin Ketordeuctase Mutant, With Nadph | 9e-14 | ||
| 4dqx_A | 277 | Crystal Structure Of A Short Chain Dehydrogenase Fr | 9e-14 | ||
| 3ak4_A | 263 | Crystal Structure Of Nadh-Dependent Quinuclidinone | 1e-13 | ||
| 4iiu_A | 267 | Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Car | 1e-13 | ||
| 3f9i_A | 249 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 2e-13 | ||
| 2zk7_A | 257 | Structure Of A C-Terminal Deletion Mutant Of Thermo | 2e-13 | ||
| 3tsc_A | 277 | Crystal Structure Of Short Chain Dehydrogenase Map_ | 2e-13 | ||
| 4dbz_A | 281 | Crystal Structure Of V151l Actinorhodin Polyketide | 2e-13 | ||
| 2cfc_A | 250 | Structural Basis For Stereo Selectivity In The (R)- | 2e-13 | ||
| 3nug_A | 247 | Crystal Structure Of Wild Type Tetrameric Pyridoxal | 2e-13 | ||
| 3v8b_A | 283 | Crystal Structure Of A 3-Ketoacyl-Acp Reductase Fro | 3e-13 | ||
| 3uve_A | 286 | Crystal Structure Of Carveol Dehydrogenase ((+)-Tra | 3e-13 | ||
| 3un1_A | 260 | Crystal Structure Of An Oxidoreductase From Sinorhi | 3e-13 | ||
| 4e3z_A | 272 | Crystal Structure Of A Oxidoreductase From Rhizobiu | 3e-13 | ||
| 2nm0_A | 253 | Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl | 3e-13 | ||
| 1w4z_A | 281 | Structure Of Actinorhodin Polyketide (Actiii) Reduc | 3e-13 | ||
| 3tn7_A | 257 | Crystal Structure Of Short-Chain Alcohol Dehydrogen | 3e-13 | ||
| 2rh4_A | 277 | Actinorhodin Ketoreductase, Actkr, With Nadph And I | 3e-13 | ||
| 1x7g_A | 261 | Actinorhodin Polyketide Ketoreductase, Act Kr, With | 3e-13 | ||
| 4dc1_A | 281 | Crystal Structure Of Y202f Actinorhodin Polyketide | 4e-13 | ||
| 4dc0_A | 281 | Crystal Structure Of F189w Actinorhodin Polyketide | 4e-13 | ||
| 3l77_A | 235 | X-Ray Structure Alcohol Dehydrogenase From Archaeon | 4e-13 | ||
| 2gdz_A | 267 | Crystal Structure Of 15-Hydroxyprostaglandin Dehydr | 4e-13 | ||
| 3imf_A | 257 | 1.99 Angstrom Resolution Crystal Structure Of A Sho | 6e-13 | ||
| 1ipe_A | 259 | Tropinone Reductase-Ii Complexed With Nadph Length | 6e-13 | ||
| 2ae2_A | 260 | Tropinone Reductase-Ii Complexed With Nadp+ And Pse | 6e-13 | ||
| 4g81_D | 255 | Crystal Structure Of A Hexonate Dehydrogenase Ortho | 1e-12 | ||
| 2dtd_A | 264 | Structure Of Thermoplasma Acidophilum Aldohexose De | 1e-12 | ||
| 1fdu_A | 327 | Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 M | 2e-12 | ||
| 1fdw_A | 327 | Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 M | 2e-12 | ||
| 1fds_A | 327 | Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C | 2e-12 | ||
| 1equ_A | 327 | Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin | 2e-12 | ||
| 4fgs_A | 273 | Crystal Structure Of A Probable Dehydrogenase Prote | 3e-12 | ||
| 1iol_A | 327 | Estrogenic 17-beta Hydroxysteroid Dehydrogenase Com | 3e-12 | ||
| 3ndr_A | 247 | Crystal Structure Of Tetrameric Pyridoxal 4-Dehydro | 4e-12 | ||
| 1ae1_A | 273 | Tropinone Reductase-I Complex With Nadp Length = 27 | 4e-12 | ||
| 3d3w_A | 244 | Structure Of L-Xylulose Reductase With Bound Coenzy | 4e-12 | ||
| 1pr9_A | 244 | Human L-Xylulose Reductase Holoenzyme Length = 244 | 5e-12 | ||
| 3u0b_A | 454 | Crystal Structure Of An Oxidoreductase From Mycobac | 5e-12 | ||
| 3rih_A | 293 | Crystal Structure Of A Putative Short Chain Dehydro | 5e-12 | ||
| 3t7c_A | 299 | Crystal Structure Of Carveol Dehydrogenase From Myc | 5e-12 | ||
| 3uwr_A | 286 | Crystal Structure Of Carveol Dehydrogenase From Myc | 5e-12 | ||
| 3sx2_A | 278 | Crystal Structure Of A Putative 3-Ketoacyl-(Acyl-Ca | 8e-12 | ||
| 4iqg_C | 271 | Crystal Structure Of Bpro0239 Oxidoreductase From P | 8e-12 | ||
| 2ph3_A | 245 | Crystal Structure Of 3-oxoacyl-[acyl Carrier Protei | 8e-12 | ||
| 1hxh_A | 253 | Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID D | 8e-12 | ||
| 1a27_A | 289 | Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C | 1e-11 | ||
| 1ybv_A | 283 | Structure Of Trihydroxynaphthalene Reductase In Com | 1e-11 | ||
| 1doh_A | 283 | Structure Of Trihydroxynaphthalene Reductase In Com | 1e-11 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 1e-11 | ||
| 1cyd_A | 244 | Carbonyl Reductase Complexed With Nadph And 2-Propa | 1e-11 | ||
| 1iy8_A | 267 | Crystal Structure Of Levodione Reductase Length = 2 | 2e-11 | ||
| 3uf0_A | 273 | Crystal Structure Of A Putative Nad(P) Dependent Gl | 2e-11 | ||
| 3s55_A | 281 | Crystal Structure Of A Putative Short-Chain Dehydro | 2e-11 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 2e-11 | ||
| 4e6p_A | 259 | Crystal Structure Of A Probable Sorbitol Dehydrogen | 3e-11 | ||
| 3is3_A | 270 | Crystal Structure Of 17beta-Hydroxysteroid Dehydrog | 3e-11 | ||
| 3oic_A | 258 | Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl | 4e-11 | ||
| 1nxq_A | 251 | Crystal Structure Of R-Alcohol Dehydrogenase (Radh) | 5e-11 | ||
| 3i4f_A | 264 | Structure Of Putative 3-oxoacyl-reductase From Baci | 5e-11 | ||
| 3gvc_A | 277 | Crystal Structure Of Probable Short-Chain Dehydroge | 6e-11 | ||
| 3vtz_A | 269 | Structure Of Thermoplasma Volcanium Aldohexose Dehy | 6e-11 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 8e-11 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 8e-11 | ||
| 2ew8_A | 249 | Crystal Structure Of The (s)-specific 1-phenylethan | 8e-11 | ||
| 2fwm_X | 250 | Crystal Structure Of E. Coli Enta, A 2,3-Dihydrodih | 8e-11 | ||
| 3ucx_A | 264 | The Structure Of A Short Chain Dehydrogenase From M | 9e-11 | ||
| 3itd_A | 270 | Crystal Structure Of An Inactive 17beta-Hydroxyster | 9e-11 | ||
| 1zjy_A | 251 | Structure Of R-Specific Alcohol Dehydrogenase (Muta | 1e-10 | ||
| 3d3w_B | 245 | Structure Of L-Xylulose Reductase With Bound Coenzy | 1e-10 | ||
| 4ibo_A | 271 | Crystal Structure Of A Putative Gluconate Dehydroge | 1e-10 | ||
| 1vl8_A | 267 | Crystal Structure Of Gluconate 5-dehydrogenase (tm0 | 1e-10 | ||
| 1zem_A | 262 | Crystal Structure Of Nad+-Bound Xylitol Dehydrogena | 1e-10 | ||
| 3cxr_A | 291 | Crystal Structure Of Gluconate 5-Dehydrogase From S | 1e-10 | ||
| 1spx_A | 278 | Crystal Structure Of Glucose Dehydrogenase Of Caeno | 2e-10 | ||
| 4hp8_A | 247 | Crystal Structure Of A Putative 2-Deoxy-D-Gluconate | 2e-10 | ||
| 3g1t_A | 258 | Crystal Structure Of Short Chain Dehydrogenase From | 3e-10 | ||
| 4dyv_A | 272 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 4e-10 | ||
| 3nyw_A | 250 | Crystal Structure Of A Betaketoacyl-[acp] Reductase | 4e-10 | ||
| 1yde_A | 270 | Crystal Structure Of Human Retinal Short-Chain Dehy | 4e-10 | ||
| 1e6w_A | 260 | Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Co | 5e-10 | ||
| 1e3s_A | 261 | Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Co | 5e-10 | ||
| 2a4k_A | 263 | 3-Oxoacyl-[acyl Carrier Protein] Reductase From The | 5e-10 | ||
| 4b79_A | 242 | The Aeropath Project And Pseudomonas Aeruginosa Hig | 5e-10 | ||
| 4dry_A | 281 | The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr | 5e-10 | ||
| 3m1l_A | 432 | Crystal Strucutre Of A C-Terminal Trunacted Mutant | 6e-10 | ||
| 4fw8_A | 454 | Crystal Structure Of Fabg4 Complexed With Coenzyme | 6e-10 | ||
| 1xkq_A | 280 | Crystal Structure Of Short-Chain DehydrogenaseREDUC | 7e-10 | ||
| 3v1t_C | 462 | Crystal Structure Of A Putative Ketoacyl Reductase | 8e-10 | ||
| 3lls_A | 475 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 8e-10 | ||
| 3q6i_A | 446 | Crystal Structure Of Fabg4 And Coenzyme Binary Comp | 9e-10 | ||
| 1e3w_A | 261 | Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Co | 9e-10 | ||
| 3oml_A | 613 | Structure Of Full-Length Peroxisomal Multifunctiona | 9e-10 | ||
| 3kvo_A | 346 | Crystal Structure Of The Catalytic Domain Of Human | 2e-09 | ||
| 1yb1_A | 272 | Crystal Structure Of Human 17-Beta-Hydroxysteroid D | 2e-09 | ||
| 2jgp_A | 520 | Structure Of The Tycc5-6 Pcp-C Bidomain Of The Tyro | 3e-09 | ||
| 3lf1_A | 265 | Apo Structure Of The Short Chain Oxidoreductase Q9h | 3e-09 | ||
| 2ag5_A | 246 | Crystal Structure Of Human Dhrs6 Length = 246 | 4e-09 | ||
| 2d1y_A | 256 | Crystal Structure Of Tt0321 From Thermus Thermophil | 4e-09 | ||
| 2ntn_A | 267 | Crystal Structure Of Maba-c60v/g139a/s144l Length = | 4e-09 | ||
| 1xq1_A | 266 | X-Ray Structure Of Putative Tropinone Reducatse Fro | 4e-09 | ||
| 4fc6_A | 277 | Studies On Dcr Shed New Light On Peroxisomal Beta-O | 5e-09 | ||
| 3t4x_A | 267 | Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDU | 6e-09 | ||
| 3f5s_A | 255 | Crystal Structure Of Putatitve Short Chain Dehydrog | 6e-09 | ||
| 1uzm_A | 247 | Maba From Mycobacterium Tuberculosis Length = 247 | 6e-09 | ||
| 3pk0_A | 262 | Crystal Structure Of Short-Chain DehydrogenaseREDUC | 6e-09 | ||
| 3icc_A | 255 | Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Car | 7e-09 | ||
| 3f1l_A | 252 | The 0.95 A Structure Of An Oxidoreductase, Ycik Fro | 8e-09 | ||
| 3f5q_A | 262 | Crystal Structure Of Putative Short Chain Dehydroge | 9e-09 | ||
| 3sju_A | 279 | Hedamycin Polyketide Ketoreductase Bound To Nadph L | 1e-08 | ||
| 3tzq_B | 271 | Crystal Structure Of A Short-Chain Type Dehydrogena | 1e-08 | ||
| 3e03_A | 274 | Crystal Structure Of A Putative Dehydrogenase From | 1e-08 | ||
| 3iah_A | 256 | Crystal Structure Of Short Chain Dehydrogenase (yci | 1e-08 | ||
| 4ixt_A | 254 | Structure Of A 37-fold Mutant Of Halohydrin Dehalog | 2e-08 | ||
| 1xhl_A | 297 | Crystal Structure Of Putative Tropinone Reductase-I | 2e-08 | ||
| 1uzl_A | 247 | Maba From Mycobacterium Tuberculosis Length = 247 | 2e-08 | ||
| 1ahi_A | 255 | 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With | 2e-08 | ||
| 3tox_A | 280 | Crystal Structure Of A Short Chain Dehydrogenase In | 2e-08 | ||
| 1ja9_A | 274 | Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalen | 2e-08 | ||
| 1u7t_A | 261 | Crystal Structure Of AbadHSD10 WITH A BOUND INHIBIT | 2e-08 | ||
| 1so8_A | 261 | Abeta-bound Human Abad Structure [also Known As 3-h | 2e-08 | ||
| 2o23_A | 265 | The Structure Of Wild-Type Human Hadh2 (17beta-Hydr | 2e-08 | ||
| 3kzv_A | 254 | The Crystal Structure Of A Cytoplasmic Protein With | 3e-08 | ||
| 3u9l_A | 324 | The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr | 5e-08 | ||
| 4f6c_A | 427 | Crystal Structure Of Aureusimine Biosynthetic Clust | 6e-08 | ||
| 3guy_A | 230 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 9e-08 | ||
| 3o38_A | 266 | Crystal Structure Of A Short Chain Dehydrogenase Fr | 1e-07 | ||
| 1dny_A | 91 | Solution Structure Of Pcp, A Prototype For The Pept | 1e-07 | ||
| 2gdw_A | 85 | Solution Structure Of The B. Brevis Tycc3-Pcp In AH | 1e-07 | ||
| 3f1k_A | 252 | Crystal Structure Of Ycik From E. Coli, An Oxidored | 1e-07 | ||
| 3e9q_A | 273 | Crystal Structure Of The Short Chain Dehydrogenase | 2e-07 | ||
| 2bgk_A | 278 | X-Ray Structure Of Apo-Secoisolariciresinol Dehydro | 2e-07 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 3e-07 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-07 | ||
| 1uls_A | 245 | Crystal Structure Of Tt0140 From Thermus Thermophil | 4e-07 | ||
| 3gdf_A | 267 | Crystal Structure Of The Nadp-Dependent Mannitol De | 4e-07 | ||
| 2k2q_A | 82 | Complex Structure Of The External Thioesterase Of T | 4e-07 | ||
| 2wdz_A | 254 | Crystal Structure Of The Short Chain Dehydrogenase | 5e-07 | ||
| 3a28_C | 258 | Crystal Structure Of L-2,3-Butanediol Dehydrogenase | 5e-07 | ||
| 3i3o_A | 291 | 2.06 Angstrom Resolution Crystal Structure Of A Sho | 5e-07 | ||
| 3ijr_A | 291 | 2.05 Angstrom Resolution Crystal Structure Of A Sho | 6e-07 | ||
| 4eso_A | 255 | Crystal Structure Of A Putative Oxidoreductase Prot | 7e-07 | ||
| 3gaf_A | 256 | 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid De | 8e-07 | ||
| 3ged_A | 247 | Fingerprint And Structural Analysis Of A Apo Scor E | 9e-07 | ||
| 1w6u_A | 302 | Structure Of Human Decr Ternary Complex Length = 30 | 1e-06 | ||
| 2pd6_A | 264 | Structure Of Human Hydroxysteroid Dehydrogenase Typ | 1e-06 | ||
| 3vc7_A | 254 | Crystal Structure Of A Putative Oxidoreductase From | 1e-06 | ||
| 1zbq_A | 327 | Crystal Structure Of Human 17-beta-hydroxysteroid D | 1e-06 | ||
| 1w73_A | 302 | Binary Structure Of Human Decr Solved By Semet Sad. | 2e-06 | ||
| 3dwf_A | 276 | Crystal Structure Of The Guinea Pig 11beta-Hydroxys | 2e-06 | ||
| 3g49_A | 277 | N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b- | 2e-06 | ||
| 3lz6_A | 263 | Guinea Pig 11beta Hydroxysteroid Dehydrogenase With | 2e-06 | ||
| 2qq5_A | 260 | Crystal Structure Of Human Sdr Family Member 1 Leng | 3e-06 | ||
| 3awd_A | 260 | Crystal Structure Of Gox2181 Length = 260 | 3e-06 | ||
| 3ksu_A | 262 | Crystal Structure Of Short-Chain Dehydrogenase From | 3e-06 | ||
| 3qlj_A | 322 | Crystal Structure Of A Short Chain Dehydrogenase Fr | 3e-06 | ||
| 1xse_A | 295 | Crystal Structure Of Guinea Pig 11beta-Hydroxystero | 3e-06 | ||
| 3sc4_A | 285 | Crystal Structure Of A Short Chain Dehydrogenase (A | 3e-06 | ||
| 1mg5_A | 255 | Crystal Structure Of Drosophila Melanogaster Alcoho | 4e-06 | ||
| 3ctm_A | 279 | Crystal Structure Of A Carbonyl Reductase From Cand | 4e-06 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 6e-06 | ||
| 4bb6_A | 292 | Free-Wilson And Structural Approaches To Co-Optimis | 6e-06 | ||
| 3pdj_A | 273 | Crystal Structure Of Human 11-Beta-Hydroxysteroid D | 6e-06 | ||
| 3d5q_A | 272 | Crystal Structure Of 11b-Hsd1 In Complex With Triaz | 6e-06 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 6e-06 | ||
| 1n5d_A | 288 | Crystal Structure Of Porcine Testicular Carbonyl Re | 6e-06 | ||
| 1xu7_A | 286 | Crystal Structure Of The Interface Open Conformatio | 6e-06 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 7e-06 | ||
| 2ilt_A | 275 | Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) W | 7e-06 | ||
| 2rbe_A | 275 | The Discovery Of 2-Anilinothiazolones As 11beta-Hsd | 7e-06 | ||
| 4bb5_A | 292 | Free-Wilson And Structural Approaches To Co-Optimis | 8e-06 | ||
| 2irw_A | 264 | Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) W | 9e-06 | ||
| 2bel_A | 283 | Structure Of Human 11-Beta-Hydroxysteroid Dehydroge | 1e-05 | ||
| 4hfr_A | 272 | Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In | 2e-05 | ||
| 3ch6_A | 286 | Crystal Structure Of 11beta-Hsd1 Double Mutant (L26 | 2e-05 | ||
| 1gz6_A | 319 | (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat | 2e-05 | ||
| 1wma_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Hyd | 4e-05 | ||
| 1x1e_A | 239 | Crystal Structure Of Tt0495 Protein From Thermus Th | 5e-05 | ||
| 3uxy_A | 266 | The Crystal Structure Of Short Chain Dehydrogenase | 5e-05 | ||
| 2pfg_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Big | 5e-05 | ||
| 1pwx_A | 254 | Crystal Structure Of The Haloalcohol Dehalogenase H | 6e-05 | ||
| 1o5i_A | 249 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 7e-05 | ||
| 1a4u_A | 254 | Alcohol Dehydrogenase From Drosophila Lebanonensis | 9e-05 | ||
| 3rj5_A | 254 | Structure Of Alcohol Dehydrogenase From Drosophila | 1e-04 | ||
| 4da9_A | 280 | Crystal Structure Of Putative Short-Chain Dehydroge | 1e-04 | ||
| 3afm_A | 258 | Crystal Structure Of Aldose Reductase A1-R Responsi | 1e-04 | ||
| 3tl3_A | 257 | Structure Of A Short-Chain Type DehydrogenaseREDUCT | 1e-04 | ||
| 1h5q_A | 265 | Mannitol Dehydrogenase From Agaricus Bisporus Lengt | 2e-04 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 3e-04 | ||
| 3gmd_A | 264 | Structure-Based Design Of 7-Azaindole-Pyrrolidines | 3e-04 | ||
| 3rd5_A | 291 | Crystal Structure Of A Putative Uncharacterized Pro | 4e-04 | ||
| 4imr_A | 275 | Crystal Structure Of 3-oxoacyl (acyl-carrier-protei | 5e-04 | ||
| 3tpc_A | 257 | Crystal Structure Of A Hypothtical Protein Sma1452 | 6e-04 | ||
| 3o26_A | 311 | The Structure Of Salutaridine Reductase From Papave | 8e-04 |
| >pdb|3TFO|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From Sinorhizobium Meliloti Length = 264 | Back alignment and structure |
|
| >pdb|3P19|A Chain A, Improved Nadph-Dependent Blue Fluorescent Protein Length = 266 | Back alignment and structure |
|
| >pdb|2JAP|A Chain A, Clavulanic Acid Dehydrogenase: Structural And Biochemical Analysis Of The Final Step In The Biosynthesis Of The Beta- Lactamase Inhibitor Clavulanic Acid Length = 247 | Back alignment and structure |
|
| >pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia Coli Length = 248 | Back alignment and structure |
|
| >pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain Oxidoreductase (Sdr) In Complex With Nadp Length = 262 | Back alignment and structure |
|
| >pdb|2JAH|A Chain A, Biochemical And Structural Analysis Of The Clavulanic Acid Dehydeogenase (Cad) From Streptomyces Clavuligerus Length = 247 | Back alignment and structure |
|
| >pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In Complex With Nadp Length = 279 | Back alignment and structure |
|
| >pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase Length = 234 | Back alignment and structure |
|
| >pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis (Ba3989) Length = 246 | Back alignment and structure |
|
| >pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal Peptide Synthetase From Mycobacterium Tuberculosis Length = 478 | Back alignment and structure |
|
| >pdb|2NWQ|A Chain A, Short Chain Dehydrogenase From Pseudomonas Aeruginosa Length = 272 | Back alignment and structure |
|
| >pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein] Reductase From E. Coli. Length = 244 | Back alignment and structure |
|
| >pdb|3OEC|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Thermoresistibile Length = 317 | Back alignment and structure |
|
| >pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant In Complex With Nadph Fragment Length = 244 | Back alignment and structure |
|
| >pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From Staphylococcus Aureus Complex With Nadph Length = 252 | Back alignment and structure |
|
| >pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE FROM BRUCELLA Melitensis (P43212) Length = 249 | Back alignment and structure |
|
| >pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE From Brucella Melitensis Length = 246 | Back alignment and structure |
|
| >pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(F187a) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3FTP|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Burkholderia Pseudomallei At 2.05 A Resolution Length = 270 | Back alignment and structure |
|
| >pdb|3RSH|A Chain A, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase (Fabg) From Vibrio Cholerae O1 Complexed With Nadp+ (Space Group P62) Length = 251 | Back alignment and structure |
|
| >pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL Dehydrogenase From Clostridium Thermocellum Length = 247 | Back alignment and structure |
|
| >pdb|3TZC|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(Y155f) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3OSU|A Chain A, Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Protein Reductase, Fabg, From Staphylococcus Aureus Length = 246 | Back alignment and structure |
|
| >pdb|4AFN|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein) Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein Reductase From Brassica Napus Complexed With Nadp+ Length = 244 | Back alignment and structure |
|
| >pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase (Saro_0793) From Novosphingobium Aromaticivorans Length = 319 | Back alignment and structure |
|
| >pdb|4DML|A Chain A, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Synechococcus Elongatus Pcc 7942 Length = 269 | Back alignment and structure |
|
| >pdb|3TZK|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92a) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92d) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3M1A|A Chain A, The Crystal Structure Of A Short-Chain Dehydrogenase From Streptomyces Avermitilis To 2a Length = 281 | Back alignment and structure |
|
| >pdb|2CF2|E Chain E, Architecture Of Mammalian Fatty Acid Synthase Length = 226 | Back alignment and structure |
|
| >pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Bartonella Henselae Length = 266 | Back alignment and structure |
|
| >pdb|4FN4|A Chain A, Short-chain Nad(h)-dependent Dehydrogenase/reductase From Sulfolobus Acidocaldarius Length = 254 | Back alignment and structure |
|
| >pdb|3OP4|A Chain A, Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Nadp+ Length = 248 | Back alignment and structure |
|
| >pdb|1WMB|A Chain A, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate Dehydrogenase Length = 260 | Back alignment and structure |
|
| >pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263 | Back alignment and structure |
|
| >pdb|2B4Q|A Chain A, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex Length = 276 | Back alignment and structure |
|
| >pdb|3QIV|A Chain A, Crystal Structure Of A Putative Short-Chain Dehydrogenase Or 3- Oxoacyl-[acyl-Carrier-Protein] Reductase From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|3O4R|A Chain A, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR FAMILY) MEMBER 4 (Dhrs4) Length = 261 | Back alignment and structure |
|
| >pdb|3EZL|A Chain A, Crystal Structure Of Acetyacetyl-Coa Reductase From Burkholderia Pseudomallei 1710b Length = 256 | Back alignment and structure |
|
| >pdb|1NFF|A Chain A, Crystal Structure Of Rv2002 Gene Product From Mycobacterium Tuberculosis Length = 260 | Back alignment and structure |
|
| >pdb|2ZTM|A Chain A, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase Length = 260 | Back alignment and structure |
|
| >pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263 | Back alignment and structure |
|
| >pdb|2BD0|A Chain A, Chlorobium Tepidum Sepiapterin Reductase Complexed With Nadp And Sepiapterin Length = 244 | Back alignment and structure |
|
| >pdb|2ZTU|A Chain A, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase Complexed With Nad+ Length = 260 | Back alignment and structure |
|
| >pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum Length = 285 | Back alignment and structure |
|
| >pdb|2Y93|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3- Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-356. Length = 281 | Back alignment and structure |
|
| >pdb|3V2G|A Chain A, Crystal Structure Of A DehydrogenaseREDUCTASE FROM SINORHIZOBIUM Meliloti 1021 Length = 271 | Back alignment and structure |
|
| >pdb|1BDB|A Chain A, Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From Pseudomonas Sp. Lb400 Length = 277 | Back alignment and structure |
|
| >pdb|1RWB|A Chain A, Cooperative Effect Of Two Surface Amino Acid Mutations (Q252l And E170k) Of Glucose Dehydrogenase From Bacillus Megaterium Iwg3 For The Stabilization Of Oligomeric State Length = 261 | Back alignment and structure |
|
| >pdb|1G6K|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant E96a Complexed With Nad+ Length = 261 | Back alignment and structure |
|
| >pdb|1GEE|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l Complexed With Nad+ Length = 261 | Back alignment and structure |
|
| >pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogenase Complexed With Nad+ Length = 261 | Back alignment and structure |
|
| >pdb|3V2H|A Chain A, The Crystal Structure Of D-Beta-Hydroxybutyrate Dehydrogenase From Sinorhizobium Meliloti Length = 281 | Back alignment and structure |
|
| >pdb|2ZAT|A Chain A, Crystal Structure Of A Mammalian Reductase Length = 260 | Back alignment and structure |
|
| >pdb|2PNF|A Chain A, Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-carrier Protein) Reductase Length = 248 | Back alignment and structure |
|
| >pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Length = 260 | Back alignment and structure |
|
| >pdb|1NFR|A Chain A, Rv2002 Gene Product From Mycobacterium Tuberculosis Length = 260 | Back alignment and structure |
|
| >pdb|2HSD|A Chain A, The Refined Three-Dimensional Structure Of 3alpha,20beta- Hydroxysteroid Dehydrogenase And Possible Roles Of The Residues Conserved In Short-Chain Dehydrogenases Length = 253 | Back alignment and structure |
|
| >pdb|2Q2Q|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Putida Length = 255 | Back alignment and structure |
|
| >pdb|3N74|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reduc Brucella Melitensis Length = 261 | Back alignment and structure |
|
| >pdb|1HDC|A Chain A, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid Dehydrogenase By A Licorice-Derived Steroidal Inhibitor Length = 254 | Back alignment and structure |
|
| >pdb|3LYL|A Chain A, Structure Of 3-Oxoacyl-Acylcarrier Protein Reductase, Fabg From Francisella Tularensis Length = 247 | Back alignment and structure |
|
| >pdb|3GK3|A Chain A, Crystal Structure Of Acetoacetyl-Coa Reductase From Burkholderia Pseudomallei 1710b Length = 269 | Back alignment and structure |
|
| >pdb|3PGX|A Chain A, Crystal Structure Of A Putative Carveol Dehydrogenase From Mycobacterium Paratuberculosis Bound To Nicotinamide Adenine Dinucleotide Length = 280 | Back alignment and structure |
|
| >pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa Reductase Length = 303 | Back alignment and structure |
|
| >pdb|3TJR|A Chain A, Crystal Structure Of A Rv0851c Ortholog Short Chain Dehydrogenase From Mycobacterium Paratuberculosis Length = 301 | Back alignment and structure |
|
| >pdb|3R1I|A Chain A, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 276 | Back alignment and structure |
|
| >pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol Dehydrogenase Length = 256 | Back alignment and structure |
|
| >pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 A258f Mutant In Complex With Nadh And D-Glucose Length = 269 | Back alignment and structure |
|
| >pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 In Ligand-Free Form Length = 269 | Back alignment and structure |
|
| >pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 G259a Mutant Length = 269 | Back alignment and structure |
|
| >pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Sinorhizobium Meliloti Length = 267 | Back alignment and structure |
|
| >pdb|3E9N|A Chain A, Crystal Structure Of A Putative Short-Chain DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM Length = 245 | Back alignment and structure |
|
| >pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida Tropicalis Peroxisomal Multifunctional Enzyme Type 2 Length = 604 | Back alignment and structure |
|
| >pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster Reductase Domain Length = 508 | Back alignment and structure |
|
| >pdb|4IIN|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier Protein]reductase From Helicobacter Pylori 26695 Complexed With Nad+ Length = 271 | Back alignment and structure |
|
| >pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R. Sphaeroides Length = 256 | Back alignment and structure |
|
| >pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To Nadph And The Inhibitor Emodin Length = 281 | Back alignment and structure |
|
| >pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And Inhibitor Emodin Length = 277 | Back alignment and structure |
|
| >pdb|4DQX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Rhizobium Etli Cfn 42 Length = 277 | Back alignment and structure |
|
| >pdb|3AK4|A Chain A, Crystal Structure Of Nadh-Dependent Quinuclidinone Reductase From Agrobacterium Tumefaciens Length = 263 | Back alignment and structure |
|
| >pdb|4IIU|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier Protein]reductase From Escherichia Coli Strain Cft073 Complexed With Nadp+ At 2.1 A Resolution Length = 267 | Back alignment and structure |
|
| >pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase Rickettsia Prowazekii Length = 249 | Back alignment and structure |
|
| >pdb|2ZK7|A Chain A, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma Acidophilum Aldohexose Dehydrogenase (Aldt) Length = 257 | Back alignment and structure |
|
| >pdb|3TSC|A Chain A, Crystal Structure Of Short Chain Dehydrogenase Map_2410 From Mycobacterium Paratuberculosis Bound To Nad Length = 277 | Back alignment and structure |
|
| >pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And (S)- Hydroxypropylethane Thiosulfonate Dehydrogenases Length = 250 | Back alignment and structure |
|
| >pdb|3NUG|A Chain A, Crystal Structure Of Wild Type Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247 | Back alignment and structure |
|
| >pdb|3V8B|A Chain A, Crystal Structure Of A 3-Ketoacyl-Acp Reductase From Sinorhizobium Meliloti 1021 Length = 283 | Back alignment and structure |
|
| >pdb|3UVE|A Chain A, Crystal Structure Of Carveol Dehydrogenase ((+)-Trans-Carveol Dehydrogenase) From Mycobacterium Avium Length = 286 | Back alignment and structure |
|
| >pdb|3UN1|A Chain A, Crystal Structure Of An Oxidoreductase From Sinorhizobium Meliloti 1021 Length = 260 | Back alignment and structure |
|
| >pdb|4E3Z|A Chain A, Crystal Structure Of A Oxidoreductase From Rhizobium Etli Cfn 42 Length = 272 | Back alignment and structure |
|
| >pdb|2NM0|A Chain A, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier Protein Reductase From Streptomyces Coelicolor A3(2) Length = 253 | Back alignment and structure |
|
| >pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase Length = 281 | Back alignment and structure |
|
| >pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase From Hyperthermophilic Archaeon Thermococcus Sibiricus Complexed With 5- Hydroxy-Nadp Length = 257 | Back alignment and structure |
|
| >pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And Inhibitor Emodin Length = 277 | Back alignment and structure |
|
| >pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp Bound Length = 261 | Back alignment and structure |
|
| >pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|3L77|A Chain A, X-Ray Structure Alcohol Dehydrogenase From Archaeon Thermococcus Sibiricus Complexed With 5-Hydroxy-Nadp Length = 235 | Back alignment and structure |
|
| >pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase Type1, Complexed With Nad+ Length = 267 | Back alignment and structure |
|
| >pdb|3IMF|A Chain A, 1.99 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' Length = 257 | Back alignment and structure |
|
| >pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph Length = 259 | Back alignment and structure |
|
| >pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And Pseudotropine Length = 260 | Back alignment and structure |
|
| >pdb|4G81|D Chain D, Crystal Structure Of A Hexonate Dehydrogenase Ortholog (Target Efi- 506402 From Salmonella Enterica, Unliganded Structure Length = 255 | Back alignment and structure |
|
| >pdb|2DTD|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose Dehydrogenase (aldt) In Ligand-free Form Length = 264 | Back alignment and structure |
|
| >pdb|1FDU|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221l Complexed With Estradiol And Nadp+ Length = 327 | Back alignment and structure |
|
| >pdb|1FDW|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221q Complexed With Estradiol Length = 327 | Back alignment and structure |
|
| >pdb|1FDS|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Complexed With 17- Beta-Estradiol Length = 327 | Back alignment and structure |
|
| >pdb|1EQU|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin Complexed With Nadp+ Length = 327 | Back alignment and structure |
|
| >pdb|4FGS|A Chain A, Crystal Structure Of A Probable Dehydrogenase Protein Length = 273 | Back alignment and structure |
|
| >pdb|1IOL|A Chain A, Estrogenic 17-beta Hydroxysteroid Dehydrogenase Complexed 17-beta- Estradiol Length = 327 | Back alignment and structure |
|
| >pdb|3NDR|A Chain A, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247 | Back alignment and structure |
|
| >pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp Length = 273 | Back alignment and structure |
|
| >pdb|3D3W|A Chain A, Structure Of L-Xylulose Reductase With Bound Coenzyme, Phosphate And Hydroxide Length = 244 | Back alignment and structure |
|
| >pdb|1PR9|A Chain A, Human L-Xylulose Reductase Holoenzyme Length = 244 | Back alignment and structure |
|
| >pdb|3U0B|A Chain A, Crystal Structure Of An Oxidoreductase From Mycobacterium Smegmatis Length = 454 | Back alignment and structure |
|
| >pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase Or Reductase From Mycobacterium Abscessus Length = 293 | Back alignment and structure |
|
| >pdb|3T7C|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Avium Bound To Nad Length = 299 | Back alignment and structure |
|
| >pdb|3UWR|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Avium Strain 104 Length = 286 | Back alignment and structure |
|
| >pdb|3SX2|A Chain A, Crystal Structure Of A Putative 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Mycobacterium Paratuberculosis In Complex With Nad Length = 278 | Back alignment and structure |
|
| >pdb|4IQG|C Chain C, Crystal Structure Of Bpro0239 Oxidoreductase From Polaromonas Sp. Js666 In Nadp Bound Form Length = 271 | Back alignment and structure |
|
| >pdb|2PH3|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl Carrier Protein] Reductase Ttha0415 From Thermus Thermophilus Length = 245 | Back alignment and structure |
|
| >pdb|1HXH|A Chain A, Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID Dehydrogenase Length = 253 | Back alignment and structure |
|
| >pdb|1A27|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C-Terminal Deletion Mutant Complexed With Estradiol And Nadp+ Length = 289 | Back alignment and structure |
|
| >pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And An Active Site Inhibitor Length = 283 | Back alignment and structure |
|
| >pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And 4-nitro-inden-1-one Length = 283 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol Length = 244 | Back alignment and structure |
|
| >pdb|1IY8|A Chain A, Crystal Structure Of Levodione Reductase Length = 267 | Back alignment and structure |
|
| >pdb|3UF0|A Chain A, Crystal Structure Of A Putative Nad(P) Dependent Gluconate 5- Dehydrogenase From Beutenbergia Cavernae(Efi Target Efi-502044) With Bound Nadp (Low Occupancy) Length = 273 | Back alignment and structure |
|
| >pdb|3S55|A Chain A, Crystal Structure Of A Putative Short-Chain DehydrogenaseREDUCTASE From Mycobacterium Abscessus Bound To Nad Length = 281 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|4E6P|A Chain A, Crystal Structure Of A Probable Sorbitol Dehydrogenase (Target Psi- 012078) From Sinorhizobium Meliloti 1021 Length = 259 | Back alignment and structure |
|
| >pdb|3IS3|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase (Apo Form) From Fungus Cochliobolus Lunatus Length = 270 | Back alignment and structure |
|
| >pdb|3OIC|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From B. Subtilis (Apo Form) Length = 258 | Back alignment and structure |
|
| >pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh) (Apoenyzme) From Lactobacillus Brevis Length = 251 | Back alignment and structure |
|
| >pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus Thuringiensis Length = 264 | Back alignment and structure |
|
| >pdb|3GVC|A Chain A, Crystal Structure Of Probable Short-Chain Dehydrogenase- Reductase From Mycobacterium Tuberculosis Length = 277 | Back alignment and structure |
|
| >pdb|3VTZ|A Chain A, Structure Of Thermoplasma Volcanium Aldohexose Dehydrogenase Length = 269 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|2EW8|A Chain A, Crystal Structure Of The (s)-specific 1-phenylethanol Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1 Length = 249 | Back alignment and structure |
|
| >pdb|2FWM|X Chain X, Crystal Structure Of E. Coli Enta, A 2,3-Dihydrodihydroxy Benzoate Dehydrogenase Length = 250 | Back alignment and structure |
|
| >pdb|3UCX|A Chain A, The Structure Of A Short Chain Dehydrogenase From Mycobacterium Smegmatis Length = 264 | Back alignment and structure |
|
| >pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid Dehydrogenase (Y167f Mutated Form) From Fungus Cochliobolus Lunatus Length = 270 | Back alignment and structure |
|
| >pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus Brevis In Complex With Phenylethanol And Nadh Length = 251 | Back alignment and structure |
|
| >pdb|4IBO|A Chain A, Crystal Structure Of A Putative Gluconate Dehydrogenase From Agrobacterium Tumefaciens (Target Efi-506446) Length = 271 | Back alignment and structure |
|
| >pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267 | Back alignment and structure |
|
| >pdb|1ZEM|A Chain A, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase Length = 262 | Back alignment and structure |
|
| >pdb|3CXR|A Chain A, Crystal Structure Of Gluconate 5-Dehydrogase From Streptococcus Suis Type 2 Length = 291 | Back alignment and structure |
|
| >pdb|1SPX|A Chain A, Crystal Structure Of Glucose Dehydrogenase Of Caenorhabditis Elegans In The Apo-Form Length = 278 | Back alignment and structure |
|
| >pdb|4HP8|A Chain A, Crystal Structure Of A Putative 2-Deoxy-D-Gluconate 3-Dehydrogenase From Agrobacterium Tumefaciens (Target Efi-506435) With Bound Nadp Length = 247 | Back alignment and structure |
|
| >pdb|3G1T|A Chain A, Crystal Structure Of Short Chain Dehydrogenase From Salmonella Enterica Subsp. Enterica Serovar Typhi Str. Ct18 Length = 258 | Back alignment and structure |
|
| >pdb|4DYV|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SDR FROM Xanthobacter Autotrophicus Py2 Length = 272 | Back alignment and structure |
|
| >pdb|3NYW|A Chain A, Crystal Structure Of A Betaketoacyl-[acp] Reductase (Fabg) From Bacteroides Thetaiotaomicron Length = 250 | Back alignment and structure |
|
| >pdb|1YDE|A Chain A, Crystal Structure Of Human Retinal Short-Chain DehydrogenaseREDUCTASE 3 Length = 270 | Back alignment and structure |
|
| >pdb|1E6W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex With Nadh And Estradiol Length = 260 | Back alignment and structure |
|
| >pdb|1E3S|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex With Nadh Length = 261 | Back alignment and structure |
|
| >pdb|2A4K|A Chain A, 3-Oxoacyl-[acyl Carrier Protein] Reductase From Thermus Thermophilus Tt0137 Length = 263 | Back alignment and structure |
|
| >pdb|4B79|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa High-throughput Crystallographic Studies For Assessment Of Potential Targets In Early Stage Drug Discovery. Length = 242 | Back alignment and structure |
|
| >pdb|4DRY|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Rhizobium Meliloti Length = 281 | Back alignment and structure |
|
| >pdb|3M1L|A Chain A, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A Putative Ketoacyl Reductase (Fabg4) From Mycobacterium Tuberculosis H37rv At 2.5 Angstrom Resolution Length = 432 | Back alignment and structure |
|
| >pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh Length = 454 | Back alignment and structure |
|
| >pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor Length = 280 | Back alignment and structure |
|
| >pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4) From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom Resolution Length = 462 | Back alignment and structure |
|
| >pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Mycobacterium Tuberculosis Length = 475 | Back alignment and structure |
|
| >pdb|3Q6I|A Chain A, Crystal Structure Of Fabg4 And Coenzyme Binary Complex Length = 446 | Back alignment and structure |
|
| >pdb|1E3W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex With Nadh And 3-Keto Butyrate Length = 261 | Back alignment and structure |
|
| >pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional Enzyme Type 2 From Drosophila Melanogaster Length = 613 | Back alignment and structure |
|
| >pdb|3KVO|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Hydroxysteroid Dehydrogenase Like 2 (Hsdl2) Length = 346 | Back alignment and structure |
|
| >pdb|1YB1|A Chain A, Crystal Structure Of Human 17-Beta-Hydroxysteroid Dehydrogenase Type Xi Length = 272 | Back alignment and structure |
|
| >pdb|2JGP|A Chain A, Structure Of The Tycc5-6 Pcp-C Bidomain Of The Tyrocidine Synthetase Tycc Length = 520 | Back alignment and structure |
|
| >pdb|3LF1|A Chain A, Apo Structure Of The Short Chain Oxidoreductase Q9hya2 From Pseudomonas Aeruginosa Pao1 Containing An Atypical Catalytic Center Length = 265 | Back alignment and structure |
|
| >pdb|2AG5|A Chain A, Crystal Structure Of Human Dhrs6 Length = 246 | Back alignment and structure |
|
| >pdb|2D1Y|A Chain A, Crystal Structure Of Tt0321 From Thermus Thermophilus Hb8 Length = 256 | Back alignment and structure |
|
| >pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l Length = 267 | Back alignment and structure |
|
| >pdb|1XQ1|A Chain A, X-Ray Structure Of Putative Tropinone Reducatse From Arabidopsis Thaliana Gene At1g07440 Length = 266 | Back alignment and structure |
|
| >pdb|4FC6|A Chain A, Studies On Dcr Shed New Light On Peroxisomal Beta-Oxidation: Crystal Structure Of The Ternary Complex Of Pdcr Length = 277 | Back alignment and structure |
|
| >pdb|3T4X|A Chain A, Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDUCTASE FROM Bacillus Anthracis Str. Ames Ancestor Length = 267 | Back alignment and structure |
|
| >pdb|3F5S|A Chain A, Crystal Structure Of Putatitve Short Chain Dehydrogenase From Shigella Flexneri 2a Str. 301 Length = 255 | Back alignment and structure |
|
| >pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247 | Back alignment and structure |
|
| >pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE SDR FROM Mycobacterium Smegmatis Length = 262 | Back alignment and structure |
|
| >pdb|3ICC|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis At 1.87 A Resolution Length = 255 | Back alignment and structure |
|
| >pdb|3F1L|A Chain A, The 0.95 A Structure Of An Oxidoreductase, Ycik From E.Coli Length = 252 | Back alignment and structure |
|
| >pdb|3F5Q|A Chain A, Crystal Structure Of Putative Short Chain Dehydrogenase From Escherichia Coli Cft073 Length = 262 | Back alignment and structure |
|
| >pdb|3SJU|A Chain A, Hedamycin Polyketide Ketoreductase Bound To Nadph Length = 279 | Back alignment and structure |
|
| >pdb|3TZQ|B Chain B, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 271 | Back alignment and structure |
|
| >pdb|3E03|A Chain A, Crystal Structure Of A Putative Dehydrogenase From Xanthomonas Campestris Length = 274 | Back alignment and structure |
|
| >pdb|3IAH|A Chain A, Crystal Structure Of Short Chain Dehydrogenase (ycik) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 In Complex With Nadp And Acetate. Length = 256 | Back alignment and structure |
|
| >pdb|4IXT|A Chain A, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase (hhec) Bound To Ethyl (r)-4-cyano-3-hydroxybutyrate Length = 254 | Back alignment and structure |
|
| >pdb|1XHL|A Chain A, Crystal Structure Of Putative Tropinone Reductase-Ii From Caenorhabditis Elegans With Cofactor And Substrate Length = 297 | Back alignment and structure |
|
| >pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247 | Back alignment and structure |
|
| >pdb|1AHI|A Chain A, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh And 7-Oxo Glycochenodeoxycholic Acid Length = 255 | Back alignment and structure |
|
| >pdb|3TOX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase In Complex With Nad(P) From Sinorhizobium Meliloti 1021 Length = 280 | Back alignment and structure |
|
| >pdb|1JA9|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene Reductase In Complex With Nadph And Pyroquilon Length = 274 | Back alignment and structure |
|
| >pdb|1U7T|A Chain A, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR Length = 261 | Back alignment and structure |
|
| >pdb|1SO8|A Chain A, Abeta-bound Human Abad Structure [also Known As 3-hydroxyacyl-coa Dehydrogenase Type Ii (type Ii Hadh), Endoplasmic Reticulum- Associated Amyloid Beta-peptide Binding Protein (erab)] Length = 261 | Back alignment and structure |
|
| >pdb|2O23|A Chain A, The Structure Of Wild-Type Human Hadh2 (17beta-Hydroxysteroid Dehydrogenase Type 10) Bound To Nad+ At 1.2 A Length = 265 | Back alignment and structure |
|
| >pdb|3KZV|A Chain A, The Crystal Structure Of A Cytoplasmic Protein With Unknown Function From Saccharomyces Cerevisiae Length = 254 | Back alignment and structure |
|
| >pdb|3U9L|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase (Nadph) From Sinorhizobium Meliloti Length = 324 | Back alignment and structure |
|
| >pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster Reductase Domain Length = 427 | Back alignment and structure |
|
| >pdb|3GUY|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE FROM VIBRIO Parahaemolyticus Length = 230 | Back alignment and structure |
|
| >pdb|3O38|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Mycobacterium Smegmatis Length = 266 | Back alignment and structure |
|
| >pdb|1DNY|A Chain A, Solution Structure Of Pcp, A Prototype For The Peptidyl Carrier Domains Of Modular Peptide Synthetases Length = 91 | Back alignment and structure |
|
| >pdb|2GDW|A Chain A, Solution Structure Of The B. Brevis Tycc3-Pcp In AH-State Length = 85 | Back alignment and structure |
|
| >pdb|3F1K|A Chain A, Crystal Structure Of Ycik From E. Coli, An Oxidoreductase, Complexed With Nadp+ At 2.6a Resolution Length = 252 | Back alignment and structure |
|
| >pdb|3E9Q|A Chain A, Crystal Structure Of The Short Chain Dehydrogenase From Shigella Flexneri Length = 273 | Back alignment and structure |
|
| >pdb|2BGK|A Chain A, X-Ray Structure Of Apo-Secoisolariciresinol Dehydrogenase Length = 278 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|1ULS|A Chain A, Crystal Structure Of Tt0140 From Thermus Thermophilus Hb8 Length = 245 | Back alignment and structure |
|
| >pdb|3GDF|A Chain A, Crystal Structure Of The Nadp-Dependent Mannitol Dehydrogenase From Cladosporium Herbarum. Length = 267 | Back alignment and structure |
|
| >pdb|2K2Q|A Chain A, Complex Structure Of The External Thioesterase Of The Surfactin-Synthetase With A Carrier Domain Length = 82 | Back alignment and structure |
|
| >pdb|2WDZ|A Chain A, Crystal Structure Of The Short Chain Dehydrogenase Galactitol-Dehydrogenase (Gatdh) Of Rhodobacter Sphaeroides In Complex With Nad+ And 1,2-Pentandiol Length = 254 | Back alignment and structure |
|
| >pdb|3A28|C Chain C, Crystal Structure Of L-2,3-Butanediol Dehydrogenase Length = 258 | Back alignment and structure |
|
| >pdb|3I3O|A Chain A, 2.06 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad-acetone Length = 291 | Back alignment and structure |
|
| >pdb|3IJR|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad+ Length = 291 | Back alignment and structure |
|
| >pdb|4ESO|A Chain A, Crystal Structure Of A Putative Oxidoreductase Protein From Sinorhizobium Meliloti 1021 In Complex With Nadp Length = 255 | Back alignment and structure |
|
| >pdb|3GAF|A Chain A, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid Dehydrogenase From Brucella Melitensis Length = 256 | Back alignment and structure |
|
| >pdb|3GED|A Chain A, Fingerprint And Structural Analysis Of A Apo Scor Enzyme From Clostridium Thermocellum Length = 247 | Back alignment and structure |
|
| >pdb|1W6U|A Chain A, Structure Of Human Decr Ternary Complex Length = 302 | Back alignment and structure |
|
| >pdb|2PD6|A Chain A, Structure Of Human Hydroxysteroid Dehydrogenase Type 8, Hsd17b8 Length = 264 | Back alignment and structure |
|
| >pdb|3VC7|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Sinorhizobium Meliloti 1021 Length = 254 | Back alignment and structure |
|
| >pdb|1ZBQ|A Chain A, Crystal Structure Of Human 17-beta-hydroxysteroid Dehydrogenase Type 4 In Complex With Nad Length = 327 | Back alignment and structure |
|
| >pdb|1W73|A Chain A, Binary Structure Of Human Decr Solved By Semet Sad. Length = 302 | Back alignment and structure |
|
| >pdb|3DWF|A Chain A, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Mutant F278e Length = 276 | Back alignment and structure |
|
| >pdb|3G49|A Chain A, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of Pf-915275 Length = 277 | Back alignment and structure |
|
| >pdb|3LZ6|A Chain A, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With Pf-877423 Length = 263 | Back alignment and structure |
|
| >pdb|2QQ5|A Chain A, Crystal Structure Of Human Sdr Family Member 1 Length = 260 | Back alignment and structure |
|
| >pdb|3AWD|A Chain A, Crystal Structure Of Gox2181 Length = 260 | Back alignment and structure |
|
| >pdb|3KSU|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From Oenococcus Oeni Psu-1 Length = 262 | Back alignment and structure |
|
| >pdb|3QLJ|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Mycobacterium Avium Length = 322 | Back alignment and structure |
|
| >pdb|1XSE|A Chain A, Crystal Structure Of Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Length = 295 | Back alignment and structure |
|
| >pdb|3SC4|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2 Homolog) Mycobacterium Thermoresistibile Length = 285 | Back alignment and structure |
|
| >pdb|1MG5|A Chain A, Crystal Structure Of Drosophila Melanogaster Alcohol Dehydrogenase Complexed With Nadh And Acetate At 1.6 A Length = 255 | Back alignment and structure |
|
| >pdb|3CTM|A Chain A, Crystal Structure Of A Carbonyl Reductase From Candida Parapsilosis With Anti-Prelog Stereo-Specificity Length = 279 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4BB6|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising Human And Rodent Isoform Potency For 11b-Hydroxysteroid Dehydrogenase Type 1 11b-Hsd1 Inhibitors Length = 292 | Back alignment and structure |
|
| >pdb|3PDJ|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase 1 (11b-Hsd1) In Complex With 4,4-Disubstituted Cyclohexylbenzamide Inhibitor Length = 273 | Back alignment and structure |
|
| >pdb|3D5Q|A Chain A, Crystal Structure Of 11b-Hsd1 In Complex With Triazole Inhibitor Length = 272 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase 20beta-Hydroxysteroid Dehydrogenase Length = 288 | Back alignment and structure |
|
| >pdb|1XU7|A Chain A, Crystal Structure Of The Interface Open Conformation Of Tetrameric 11b-hsd1 Length = 286 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|2ILT|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With Nadp And Adamantane Sulfone Inhibitor Length = 275 | Back alignment and structure |
|
| >pdb|2RBE|A Chain A, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1 Inhibitors Length = 275 | Back alignment and structure |
|
| >pdb|4BB5|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising Human And Rodent Isoform Potency For 11b-Hydroxysteroid Dehydrogenase Type 1 11b-Hsd1 Inhibitors Length = 292 | Back alignment and structure |
|
| >pdb|2IRW|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With Nadp And Adamantane Ether Inhibitor Length = 264 | Back alignment and structure |
|
| >pdb|2BEL|A Chain A, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In Complex With Nadp And Carbenoxolone Length = 283 | Back alignment and structure |
|
| >pdb|4HFR|A Chain A, Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In Complex With An Orally Bioavailable Acidic Inhibitor Azd4017. Length = 272 | Back alignment and structure |
|
| >pdb|3CH6|A Chain A, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r, F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3- Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone Length = 286 | Back alignment and structure |
|
| >pdb|1GZ6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat Peroxisomal Multifunctional Enzyme Type 2 Length = 319 | Back alignment and structure |
|
| >pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp Length = 276 | Back alignment and structure |
|
| >pdb|1X1E|A Chain A, Crystal Structure Of Tt0495 Protein From Thermus Thermophilus Hb8 Length = 239 | Back alignment and structure |
|
| >pdb|3UXY|A Chain A, The Crystal Structure Of Short Chain Dehydrogenase From Rhodobacter Sphaeroides Length = 266 | Back alignment and structure |
|
| >pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2 Length = 276 | Back alignment and structure |
|
| >pdb|1PWX|A Chain A, Crystal Structure Of The Haloalcohol Dehalogenase Hhec Complexed With Bromide Length = 254 | Back alignment and structure |
|
| >pdb|1O5I|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Reductase (Tm1169) From Thermotoga Maritima At 2.50 A Resolution Length = 249 | Back alignment and structure |
|
| >pdb|1A4U|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Length = 254 | Back alignment and structure |
|
| >pdb|3RJ5|A Chain A, Structure Of Alcohol Dehydrogenase From Drosophila Lebanonesis T114v Mutant Complexed With Nad+ Length = 254 | Back alignment and structure |
|
| >pdb|4DA9|A Chain A, Crystal Structure Of Putative Short-Chain DehydrogenaseREDUCTASE FROM Sinorhizobium Meliloti 1021 Length = 280 | Back alignment and structure |
|
| >pdb|3AFM|A Chain A, Crystal Structure Of Aldose Reductase A1-R Responsible For Alginate Metabolism Length = 258 | Back alignment and structure |
|
| >pdb|3TL3|A Chain A, Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Ulcerans Length = 257 | Back alignment and structure |
|
| >pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bisporus Length = 265 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|3GMD|A Chain A, Structure-Based Design Of 7-Azaindole-Pyrrolidines As Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I Length = 264 | Back alignment and structure |
|
| >pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Paratuberculosis Length = 291 | Back alignment and structure |
|
| >pdb|4IMR|A Chain A, Crystal Structure Of 3-oxoacyl (acyl-carrier-protein) Reductase (target Efi-506442) From Agrobacterium Tumefaciens C58 With Nadp Bound Length = 275 | Back alignment and structure |
|
| >pdb|3TPC|A Chain A, Crystal Structure Of A Hypothtical Protein Sma1452 From Sinorhizobium Meliloti 1021 Length = 257 | Back alignment and structure |
|
| >pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver Somniferum Length = 311 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = 6e-94
Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 3/243 (1%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
+ L KV +TG+SSGIGE + L GA V ARR+++L L L A + V +
Sbjct: 3 SALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLE 62
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
LDV V V + LG +DILVNNAG+M +E +W MI+ N+ G+++
Sbjct: 63 LDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYM 122
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
LP +L R G ++ +SS AG AVY TK+ + S LRQEV++R ++V
Sbjct: 123 TRAALPHLL--RSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRV 180
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950
I+ G TEL H T + Y+ + L ++I++++ +A+ P H+ V+ I
Sbjct: 181 VVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQDIAEAVRYAVTAPHHATVHEIF 240
Query: 951 IEP 953
I P
Sbjct: 241 IRP 243
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264 | Back alignment and structure |
|---|
Score = 287 bits (736), Expect = 3e-90
Identities = 90/240 (37%), Positives = 137/240 (57%), Gaps = 4/240 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ +KVI +TG+S GIGE + ++L GAK++ ARR R+E + T +++A G+ + + LD
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + V + + G ID+LVNNAGVM + + K++EW MI+VNIKGVL IG
Sbjct: 62 VTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIG 121
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+LP M ++R G I+NI S + AVY TK+ + IS LRQE NI+VTC
Sbjct: 122 AVLPIME-AQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQE--STNIRVTC 178
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
+ G V++EL T + + D +A+ L +I++++ + P I I P
Sbjct: 179 VNPGVVESELAGTITHEETMAAMDTYRAIA-LQPADIARAVRQVIEAPQSVDTTEITIRP 237
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266 | Back alignment and structure |
|---|
Score = 286 bits (735), Expect = 4e-90
Identities = 80/245 (32%), Positives = 133/245 (54%), Gaps = 9/245 (3%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVK 770
G K++ +TG+SSGIGE + + G ++ +ARR++RL+ L + +
Sbjct: 11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNL------PNTLCA 64
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
++DVT + + G D +VNNAG+M ++ + EW M +VN+ G+L+
Sbjct: 65 QVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLN 124
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ +L M +R G I+NISS AG + F A Y GTK+ + IS +R+EV+ N++
Sbjct: 125 GMQAVLAPMK-ARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVR 183
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKA--VPVLTTKEISQSIIFALLQPSHSAVNS 948
V I VKTELLSH+T + + D YD + VL +++++++FA QP + +
Sbjct: 184 VMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGGVLAADDVARAVLFAYQQPQNVCIRE 243
Query: 949 ILIEP 953
I + P
Sbjct: 244 IALAP 248
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235 | Back alignment and structure |
|---|
Score = 274 bits (703), Expect = 7e-86
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 13/239 (5%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKLDV 774
KV +TG+S GIGE + + L G + AR +DRLE + L G + LDV
Sbjct: 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDV 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
+ V++ ++VL G +D++V NAG+ YF +E+ EE++ MI VN+ GV +
Sbjct: 62 SKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKA 121
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
L S+ ++ S + R Y TK+ + + E + +++ +
Sbjct: 122 FLDSLK-RTGGLALVTTSDVSA-RLIPYGGGYVSTKWAARALVRTFQIE--NPDVRFFEL 177
Query: 895 QAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
+ G V T + K L EI++++ L P V +++
Sbjct: 178 RPGAVDTYFGGSKPGKP--------KEKGYLKPDEIAEAVRCLLKLPKDVRVEELMLRS 228
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 8e-86
Identities = 53/245 (21%), Positives = 108/245 (44%), Gaps = 13/245 (5%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS---II 768
+ +TG+S GIG + L T G +VV +AR LE + + + I
Sbjct: 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPI 62
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
V LD+T ++++ + G +DILVN A + + + ++ + ++ +N+
Sbjct: 63 VLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSE-PVDNFRKIMEINVIAQ 121
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ + M ++ G+I N++S A FA +Y TK+ + G++ +L +E++
Sbjct: 122 YGILKTVTEIMK-VQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLG 180
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948
I+VT + G V T++ + K ++ ++ +I L + +
Sbjct: 181 IRVTTLCPGWVNTDMAKKAGTPF--------KDEEMIQPDDLLNTIRCLLNLSENVCIKD 232
Query: 949 ILIEP 953
I+ E
Sbjct: 233 IVFEM 237
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279 | Back alignment and structure |
|---|
Score = 271 bits (696), Expect = 3e-84
Identities = 71/249 (28%), Positives = 126/249 (50%), Gaps = 7/249 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIV 769
+++ VTG+S GIG + + LV G KVV AR + +E L ++A PG++I
Sbjct: 28 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIP 87
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
+ D++ E D+ + + ++ +DI +NNAG+ + W M NVN+ +
Sbjct: 88 YRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALS 147
Query: 830 HCIGNILPSML-HSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
C SM + GHI+NI+S +G V P + Y+ TKY + ++ LRQE+ +
Sbjct: 148 ICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELRE 207
Query: 887 R--NIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHS 944
+I+ TCI G V+T+ D+D + + L +++++++I+ L P+H
Sbjct: 208 AQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAHI 267
Query: 945 AVNSILIEP 953
+ I + P
Sbjct: 268 QIGDIQMRP 276
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 270 bits (692), Expect = 3e-84
Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 17/245 (6%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAK-------VVAVARRIDRLENLKTSLQNAPGSII 768
++ +TG+ GIG + + +V +R LE + +
Sbjct: 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTD 61
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
D++ DV+++ ++ GHID LVNNAGV F + E+++ +N N+KG
Sbjct: 62 TITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGT 121
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ M + GHI I+S A + F ++Y +K+ G+ +R N
Sbjct: 122 FFLTQALFALME-RQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCN 180
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948
+++T +Q G V T + D ++ ++ ++I+ ++ A LQPS + V
Sbjct: 181 VRITDVQPGAVYTPMWGKVDD-------EMQAL--MMMPEDIAAPVVQAYLQPSRTVVEE 231
Query: 949 ILIEP 953
I++ P
Sbjct: 232 IILRP 236
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 5e-84
Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 16/241 (6%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+ +TG+S GIGE + L G +V +AR RL+ L L+ A +
Sbjct: 2 EGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGA----LPLPG 57
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV E D + V + G + LVNNAGV + + LEEW +++ N+ G I
Sbjct: 58 DVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGI 117
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ +P++L R G I+N+ S AG PF G A Y +K+ + G++GA ++ + N++V
Sbjct: 118 RHAVPALL-RRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVV 176
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952
+ G V T ++ + L ++++Q+++FAL P H+ V+ I +
Sbjct: 177 NVLPGSVDTGFAGNTPGQAW-----------KLKPEDVAQAVLFALEMPGHAMVSEIELR 225
Query: 953 P 953
P
Sbjct: 226 P 226
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272 | Back alignment and structure |
|---|
Score = 269 bits (691), Expect = 1e-83
Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 2/243 (0%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
+ + +F+TG++SG GE + G +V RR +RL+ L L +A ++
Sbjct: 17 GSHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGEL-SAKTRVLPLT 75
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFT-LMEKYKLEEWNAMINVNIKGVLH 830
LDV + V + E + L+NNAG+ T + L++W+ M++ NIKG+L+
Sbjct: 76 LDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLY 135
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+LP ++ I+N+ S AG P+ G VY GTK F+E S LR ++ ++
Sbjct: 136 STRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVR 195
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950
VT ++ G ++E D + ++I+++I + + QP+H +NS+
Sbjct: 196 VTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMNQPAHLNINSLE 255
Query: 951 IEP 953
I P
Sbjct: 256 IMP 258
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235 | Back alignment and structure |
|---|
Score = 262 bits (673), Expect = 1e-81
Identities = 49/241 (20%), Positives = 100/241 (41%), Gaps = 14/241 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
++ I VTG+ SG+G L LV G +V + RR RL+ + L ++I D
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL---GNAVIGIVAD 57
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ DV + G +++++ AG F + Y E+ ++ N+ +
Sbjct: 58 LAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQ 117
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ + R G + N+ S+A A ++Y +K+ + G +LR E+ D +++
Sbjct: 118 QTVRLIG--ERGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDSPLRLVN 175
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
+ +++E ++ D +T ++ + ++ AL S V + I
Sbjct: 176 LYPSGIRSEFWDNTDHVD---------PSGFMTPEDAAAYMLDALEARSSCHVTDLFIGR 226
Query: 954 P 954
Sbjct: 227 N 227
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245 | Back alignment and structure |
|---|
Score = 261 bits (669), Expect = 7e-81
Identities = 60/241 (24%), Positives = 113/241 (46%), Gaps = 13/241 (5%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+L K+ VTG++ G+G ++VKDL V A+ R + L L + +
Sbjct: 2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEG-----VEPIES 55
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D+ E + V + L L H+D LV+ A V T +E + EW+A +++N+
Sbjct: 56 DIVKEVLEEGGV-DKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELS 114
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+LP++ G ++ I+S AG P G +Y +K+ + G++ A R+E ++ I+V+
Sbjct: 115 RQLLPALR--AASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGIRVS 172
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952
+ G T +L D + + + KEI+ +I F + + + ++ +
Sbjct: 173 TVSPGPTNTPMLQGLMDSQGTNFRP---EIY-IEPKEIANAIRFVIDAGETTQITNVDVR 228
Query: 953 P 953
P
Sbjct: 229 P 229
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 3e-77
Identities = 76/238 (31%), Positives = 132/238 (55%), Gaps = 6/238 (2%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE 777
++ VTG+++G GE + + + G KV+A RR +RL+ LK L ++ + +LDV
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG---DNLYIAQLDVRNR 58
Query: 778 NDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+++++ + AE +IDILVNNAG+ + K +E+W MI+ N KG+++ +L
Sbjct: 59 AAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVL 118
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
P M+ R GHI+NI S AG P+AG VY TK F+ S LR ++ ++VT I+
Sbjct: 119 PGMV-ERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEP 177
Query: 897 GDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
G V S+ + K + + LT +++S+++ + P+H +N++ + P
Sbjct: 178 GLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMP 235
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287 | Back alignment and structure |
|---|
Score = 252 bits (646), Expect = 4e-77
Identities = 61/248 (24%), Positives = 121/248 (48%), Gaps = 7/248 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLG---AKVVAVARRIDRLENLKTSLQNA--PGS 766
LA K + +TG+S+GIG+ + + K++ ARR+++LE LK ++
Sbjct: 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAK 88
Query: 767 IIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAG-VMYFTLMEKYKLEEWNAMINVNI 825
+ V +LD+T +K + + E IDILVNNAG + + + E+ + + N+
Sbjct: 89 VHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNV 148
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
+++ +LP ++ G I+N+ S AG + ++Y +K+ + + +LR+E+
Sbjct: 149 TALINITQAVLPIFQ-AKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELI 207
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSA 945
+ I+V I G V+TE + ++ K L +++ I++A + ++
Sbjct: 208 NTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATSRKQNTV 267
Query: 946 VNSILIEP 953
+ LI P
Sbjct: 268 IADTLIFP 275
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 255 bits (653), Expect = 1e-75
Identities = 104/475 (21%), Positives = 180/475 (37%), Gaps = 58/475 (12%)
Query: 259 FAHPTVQEMAALLENKSNETL-----KLDLIHEIDVNSYKSLDENLNVRVQCF--WKSVQ 311
H + + + +L +H + + D L+ + +V
Sbjct: 6 HHHHHSSGLVPRGSHMGRDARPTSDPRLVSVHGDNPTEVHASDLTLDRFIDADTLATAVN 65
Query: 312 LNSNKLKYGNVLLTGVTGYLGIHLLQKFL--VDTKCTLFCPVRETPNKTLLQRLEDIMLK 369
L + VLLTG TG+LG +L+ + L +D L C VR ++ +RLE
Sbjct: 66 LPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDS 125
Query: 370 YHMSLDLN---NYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPY 426
L + DRL +V D S LGL +Q + L+ +D+I+ +AA VN PY
Sbjct: 126 GDPELLRHFKELAADRLEVVAGDKSEPDLGL-DQPMWRRLAETVDLIVDSAAMVNA-FPY 183
Query: 427 NALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPST-----SENFQEDYTVADFDDFM 481
+ L+ NV T LI + K+K F YVST + + +E+
Sbjct: 184 HELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDG 243
Query: 482 TTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFK-NWNLVDLNLYILKAIT 539
GYG SK E L+ A LPV++ RCG I + N+ D ++ ++
Sbjct: 244 GWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLM 303
Query: 540 RLGYAPDIDW-----------YLEFTPVDFLTKSLVQLTTNVNNAN----KIYNFIN--T 582
G AP + + + PV F+ +++ L V ++ Y+ +N
Sbjct: 304 ATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHD 363
Query: 583 NPIHIKTLVSVLNTYGYNIKTV-PYEKWFHKLNKRELSE-------PLIQILRNKGKEYL 634
+ I + V L GY I+ + + +W + + ++ +L + L
Sbjct: 364 DGIGLDEYVDWLIEAGYPIRRIDDFAEWLQRFEASLGALPDRQRRHSVLPMLLASNSQRL 423
Query: 635 --------TVNNSYCQRNTLALLKSCDET----YPETNDHTVRQFLDNLRNSNLL 677
+ R + K + P + T+ ++ NL+ LL
Sbjct: 424 QPLKPTRGCSAPTDRFRAAVRAAKVGSDKDNPDIPHVSAPTIINYVTNLQLLGLL 478
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 2e-74
Identities = 45/237 (18%), Positives = 102/237 (43%), Gaps = 16/237 (6%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
+I +TG+SSG+G +L K G R +L + L ++ + D+
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLS---NNVGYRARDLAS 58
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+V+++ ++ +V++AG YF L+++ E+ +I N+ ++ + ++
Sbjct: 59 HQEVEQLFEQLD---SIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELV 115
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
+P +++ I S A +P A + Y K+ ++G+ ++R E+ + +K+ +
Sbjct: 116 KRYK--DQPVNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYP 173
Query: 897 GDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953
G + TE S ++ ++ + I AL + V+ I +
Sbjct: 174 GGMATEFWETSGKSL--------DTSSFMSAEDAALMIHGALANIGNGYVSDITVNR 222
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 1e-73
Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 10/243 (4%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
++L+ +V VTG+S GIG + + L +LGA+VV AR +++L ++ + A G
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHA 84
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLH 830
D++ + + VLA G D+LVNNAGV + + K EW+A+I VN+K
Sbjct: 85 CDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYL 144
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ P+M+ + GHI+NISS AG P A A YT +K+ + G+ + +E+ ++
Sbjct: 145 LLRAFAPAMIA-AKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVR 203
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950
V+ + G V+TE + + A+ + +I+ + Q S ++ +L
Sbjct: 204 VSLVAPGSVRTEFGVGLSAKK--------SALGAIEPDDIADVVALLATQADQSFISEVL 255
Query: 951 IEP 953
+ P
Sbjct: 256 VRP 258
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 6e-63
Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 13/232 (5%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKK 771
L K + VTG+S GIG ++ L +GA VV AR + L+ + + S
Sbjct: 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIA 84
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+ ++ V + +G +D+L+ N + + + VN +
Sbjct: 85 GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 144
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR--NI 889
LP ML + G I+ +SS AG + +A Y+ +K+ ++G ++R+E S N+
Sbjct: 145 TVAALP-MLK-QSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNV 202
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941
+T G + TE + V + +E + II
Sbjct: 203 SITLCVLGLIDTETAMKAVSGIV--------HMQAAPKEECALEIIKGGALR 246
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 2e-62
Identities = 42/242 (17%), Positives = 90/242 (37%), Gaps = 4/242 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
T N + V G+ IG ++ K G V A R ++L L ++ A G I+ + L
Sbjct: 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSL 63
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D E++V + +++ + N G + + + + +
Sbjct: 64 DARNEDEVTAFLNAA-DAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSG 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
ML + G I + A +R +G A + K+ + ++ ++ +E+ +NI V
Sbjct: 123 RESARLML-AHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPKNIHVA 181
Query: 893 -CIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951
I V T + ++ + + ++ ++ + QP + + I
Sbjct: 182 HLIIDSGVDTAWVRERREQMFGKDALANPDL-LMPPAAVAGAYWQLYQQPKSAWTFEMEI 240
Query: 952 EP 953
P
Sbjct: 241 RP 242
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 5e-61
Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 10/255 (3%)
Query: 704 GTVNIVFG--NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ 761
GT N+ F + K+ VTG+ SG+G + L G V RR+D L+ +
Sbjct: 14 GTENLYFQSMSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI- 72
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAM 820
+ DVT + V+ + + + G +D+L NNAG ME +W +
Sbjct: 73 --GDDALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQV 130
Query: 821 INVNIKGVLHCIGNILPSML-HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGA 879
++ N+ G C M R G I+N S + P A YT TK+ I G++ +
Sbjct: 131 VDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKS 190
Query: 880 LRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAV-PVLTTKEISQSIIFAL 938
+ +I I G+ T + V + D+S V PV+ ++ ++++
Sbjct: 191 TSLDGRVHDIACGQIDIGNADTPMAQKMKAG--VPQADLSIKVEPVMDVAHVASAVVYMA 248
Query: 939 LQPSHSAVNSILIEP 953
P + V + I
Sbjct: 249 SLPLDANVQFMTIMA 263
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319 | Back alignment and structure |
|---|
Score = 206 bits (527), Expect = 4e-60
Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 7/207 (3%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL--QNAPGSIIV 769
A + FVTG ++G+G LV+ L+ G KV R D ++ +L + + ++
Sbjct: 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMG 63
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
+LDV K EV A G + IL NNAGV F +E+ ++W+ ++ VN+ GV+
Sbjct: 64 VQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVV 123
Query: 830 HCIGNILPSML-----HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV 884
+ + +P M+ ++ GH++N +S A +Y TK+ + G+S +L +
Sbjct: 124 NGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSL 183
Query: 885 SDRNIKVTCIQAGDVKTELLSHSTDRD 911
I V+ + G VK+ + + R
Sbjct: 184 LKYEIGVSVLCPGLVKSYIYASDDIRP 210
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 5e-59
Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 26/231 (11%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
+ +TG++ G+G + L G ++ RR L L + + D+ E
Sbjct: 3 VLITGATGGLGGAFARALK--GHDLLLSGRRAGALAELAREV---GARALP--ADLADEL 55
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838
+ K ++ E G +D+LV+ G + + + M+ ++ L
Sbjct: 56 EAKALL----EEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFV----LKH 107
Query: 839 MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGD 898
++ + + G A Y K +E A R+E+ + + ++
Sbjct: 108 AR-FQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPA 166
Query: 899 VKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949
V T L + L+ +E ++ ++ L + A+ +
Sbjct: 167 VATGLWAPLGGPP----------KGALSPEEAARKVLEGLFREPVPALLEV 207
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 4e-58
Identities = 64/198 (32%), Positives = 93/198 (46%), Gaps = 4/198 (2%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+ + KV VTG+SSG G + + V G V+ ARR + L++L P L
Sbjct: 2 SESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLV---AAYPDRAEAISL 58
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DVT + V +VLA G +D+LVNNAG E+ E + +++ G
Sbjct: 59 DVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLT 118
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+LP M R G ++NISS G FAG + Y+ TK +E +S L EV+ IKV
Sbjct: 119 RALLPQM-RERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVL 177
Query: 893 CIQAGDVKTELLSHSTDR 910
++ G +T L
Sbjct: 178 IVEPGAFRTNLFGKGAAY 195
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 5e-58
Identities = 51/231 (22%), Positives = 95/231 (41%), Gaps = 14/231 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ +++ +TG+ GIG + L +K+V LE + + +D
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVD 88
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ D+ ++V AE+G + ILVNNAGV+Y + + + + VN+
Sbjct: 89 CSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTK 148
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR---NIK 890
LP+M + GHI+ ++S AG L Y +K+ G L E++ +K
Sbjct: 149 AFLPAMTKNNH-GHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVK 207
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941
TC+ V T + + + + P L +E+ ++ +L
Sbjct: 208 TTCLCPNFVNTGFIKNPS----------TSLGPTLEPEEVVNRLMHGILTE 248
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254 | Back alignment and structure |
|---|
Score = 194 bits (496), Expect = 2e-56
Identities = 49/231 (21%), Positives = 95/231 (41%), Gaps = 14/231 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKL 772
L NK + + GIG ++LV K + R++ L P +I
Sbjct: 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTY 62
Query: 773 DVTIE-NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DVT+ + KK+++++ +L +DIL+N AG++ + I +N G+++
Sbjct: 63 DVTVPVAESKKLLKKIFDQLKTVDILINGAGIL--------DDHQIERTIAINFTGLVNT 114
Query: 832 IGNILPSMLHSR--RPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
IL + G I NI S G + VY+ +K + + +L + +
Sbjct: 115 TTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPITGV 174
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDK--YDISKAVPVLTTKEISQSIIFAL 938
I G +T L+ V+ ++ + P T+++ Q+ + A+
Sbjct: 175 TAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAI 225
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 2e-56
Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 19/243 (7%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVV--AVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
KVI VTG S GIG+ +V L +L V VAR L+ LK D+
Sbjct: 3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---GDRFFYVVGDI 59
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIG 833
T ++ +K++V + G ID LV NAGV+ + + + W + ++N ++ +G
Sbjct: 60 TEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVG 119
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
LP + + G+++ +SS+A F+ Y +K + + L E +R +K
Sbjct: 120 IALPELK--KTNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANE--ERQVKAIA 175
Query: 894 IQAGDVKTEL---LSHSTDRDVVDKYDISKAVP------VLTTKEISQSIIFALLQPSHS 944
+ G V T++ + + + + +L + + L
Sbjct: 176 VAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIPD 235
Query: 945 AVN 947
VN
Sbjct: 236 GVN 238
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 5e-56
Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 7/213 (3%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-----RLENLKTSLQNAPGSI 767
++ K+I +TG+SSG G + L G +V A R I +E + ++ +
Sbjct: 2 VMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDL 61
Query: 768 IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKG 827
+LDV + V + + +++ E G ID+L++NAG M F E + E++ + ++N+
Sbjct: 62 RTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLS 121
Query: 828 VLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA-GLAVYTGTKYFIEGISGALRQEVSD 886
LP M ++ G ++ ISS++ LA Y K ++ I+ +E+S
Sbjct: 122 TQRVNRAALPHM-RRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSR 180
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDIS 919
I+ + I G + + D +
Sbjct: 181 WGIETSIIVPGAFTSGTNHFAHSGVPDDHARQA 213
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 3e-55
Identities = 54/203 (26%), Positives = 96/203 (47%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
+ + VTG +SGIG + GA++V LE L+
Sbjct: 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVV 86
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV +++ ++ E LG +D++ +NAG++ + + ++W +I++++ G +H
Sbjct: 87 CDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHA 146
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ LP +L GHI +S AG+ P AGL Y KY + G++ L +EV I V
Sbjct: 147 VEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKPNGIGV 206
Query: 892 TCIQAGDVKTELLSHSTDRDVVD 914
+ + V+T+L+S+S D
Sbjct: 207 SVLCPMVVETKLVSNSERIRGAD 229
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 1e-52
Identities = 62/262 (23%), Positives = 113/262 (43%), Gaps = 11/262 (4%)
Query: 702 NAGTVNIVF-------GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLE 754
+ GT N+ F + ++ VTG +G+G + + L G VV RR D L+
Sbjct: 12 DLGTENLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLD 71
Query: 755 NLKTSLQNAPG-SIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTL-MEKY 812
+ G + DV + V + V AE +D+LVNNAG + +E+
Sbjct: 72 AAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEV 131
Query: 813 KLEEWNAMINVNIKGVLHCIGNILPSML-HSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871
E+WN ++ N+ G C + M + R G I+N S + P A YT TK+
Sbjct: 132 TFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKH 191
Query: 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEIS 931
I G++ + + +I I G+ T++ + + V+ A P + + I+
Sbjct: 192 AITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMST-GVLQANGEVAAEPTIPIEHIA 250
Query: 932 QSIIFALLQPSHSAVNSILIEP 953
+++++ P + V ++ +
Sbjct: 251 EAVVYMASLPLSANVLTMTVMA 272
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 5e-51
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 11/215 (5%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDL---VTLGAKVVAVARRIDRLENLK---TSLQNAPGSII 768
A V+ +TG SSGIG L L + KV A R + L +L PGS+
Sbjct: 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLE 60
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
+LDV V V G +D+LV NAG+ +E + ++++VN+ G
Sbjct: 61 TLQLDVRDSKSVAAARERVTE--GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGT 118
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ + LP M R G +L S G+ VY +K+ +EG+ +L +
Sbjct: 119 VRMLQAFLPDMK-RRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFG 177
Query: 889 IKVTCIQAGDVKTELLSHSTDR--DVVDKYDISKA 921
+ ++ I+ G V T + +V+D+ DI
Sbjct: 178 VHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTF 212
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 2e-50
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 7/221 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L+ + VTG S GIG + + L GA V + + + L+N ++ ++D
Sbjct: 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAV---EVD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT V +++ + LG D+L NAGV EEW+ +VN +GV
Sbjct: 67 VTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQ 126
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
L S G I+N +S A LA Y+ +K+ + G + AL +E++ +NI+V C
Sbjct: 127 IACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNC 186
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSI 934
+ G VKT + +R+++ + ++ P E
Sbjct: 187 VCPGFVKTAM----QEREIIWEAELRGMTPEAVRAEYVSLT 223
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 3e-50
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 7/221 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TGS+ GIG + V GA V I+R + + ++D
Sbjct: 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---GPAAYAVQMD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT ++ + + + G +DILVNNA + + + E + + +N+ G L +
Sbjct: 63 VTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQ 122
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
M+ R G I+N++S AG R A +A+Y TK + ++ + ++ I V
Sbjct: 123 AAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRINVNA 182
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSI 934
I G V E D + + +++
Sbjct: 183 IAPGVVDGEH----WDGVDALFARYENRPRGEKKRLVGEAV 219
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 3e-50
Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 1/191 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKL 772
L K +TG++ GIG + + GA++V R + L+ + +L G + +
Sbjct: 18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAI 77
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D+ + ++ R G +D+LVNNAG+ + + + ++A I VN++
Sbjct: 78 DLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLA 137
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ +M+ + G I+ ++S A + P Y +K + + L +E+ I+
Sbjct: 138 SAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGPHGIRAN 197
Query: 893 CIQAGDVKTEL 903
+ V TE+
Sbjct: 198 SVCPTVVLTEM 208
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 3e-50
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 3/192 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +KV+ ++G +G L + GA +V AR ++RLE++ + + + D
Sbjct: 9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTD 68
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCI 832
+T + V +V E + G +D+++NNA + E I + + G L I
Sbjct: 69 ITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLI 128
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P++ G ++N++S A Y K + +S L E+ ++ I+V
Sbjct: 129 QGFTPALE--ESKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEKGIRVN 186
Query: 893 CIQAGDVKTELL 904
+ G + L
Sbjct: 187 SVLPGYIWGGTL 198
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 176 bits (450), Expect = 3e-50
Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 4/219 (1%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
KV VTG+ GIG+ + LV G V + + + + A G + K+DV+
Sbjct: 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVS 61
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+ V V + LG D++VNNAGV T +E E + + N+N+KGV+ I
Sbjct: 62 DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAA 121
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
+ + G I+N S AG LAVY+ +K+ + G++ ++++ I V
Sbjct: 122 VEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYC 181
Query: 896 AGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSI 934
G VKT + + + T E ++ I
Sbjct: 182 PGIVKTPM----WAEIDRQVSEAAGKPLGYGTAEFAKRI 216
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 1e-49
Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 9/215 (4%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
K V G + G+G V+ LV GA+V+ R + ++ + +
Sbjct: 4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---GPRVHALR 60
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D+ N++ + LG ID+L NAGV ++ ++ VN KG
Sbjct: 61 SDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFT 120
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ + P + R G I+ SS A G++VY+ +K + + L E+ R I+V
Sbjct: 121 VQRLTPLI---REGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIRV 177
Query: 892 TCIQAGDVKTELLSHSTDRDVVD---KYDISKAVP 923
+ G + T + + K P
Sbjct: 178 NSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITP 212
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 2e-49
Identities = 50/250 (20%), Positives = 97/250 (38%), Gaps = 20/250 (8%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTL---GAKVVAVARRIDRLENLKTSL--QNAPG 765
+ L V +TG+S G G L L L G+ ++ AR L LK L Q
Sbjct: 1 ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDL 60
Query: 766 SIIVKKLDVTIENDVKKVVREVLAELG----HIDILVNNAGV---MYFTLMEKYKLEEWN 818
+++ D+ E V++++ V +L+NNA + + L E N
Sbjct: 61 KVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVN 120
Query: 819 AMINVNIKGVLHCIGNILPSMLHSR-RPGHILNISSNAGVRPFAGLAVYTGTKYFIEGIS 877
+N+ +L L + S ++NISS ++P+ G +Y K + +
Sbjct: 121 NYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLY 180
Query: 878 GALRQEVSDRNIKVTCIQAGDVKTELLSH--STDRDVVDKYDISKAVP---VLTTKEISQ 932
L E + +++V G + ++ T +D + + K ++ +Q
Sbjct: 181 QVLAAE--EPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQ 238
Query: 933 SIIFALLQPS 942
++ L + +
Sbjct: 239 KLLGLLQKDT 248
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 2e-49
Identities = 46/207 (22%), Positives = 81/207 (39%), Gaps = 6/207 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVV---AVARRIDRLENLKTSLQNAPGSII 768
+ L NKVI + G +G K +V A+ D LK L++ +
Sbjct: 7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVA 66
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
+ + D++ E +V K+ E G +DI +N G + + + E++AM +N K
Sbjct: 67 LYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVA 126
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
I M GHI+ I+++ + Y G K +E + A +E+ +
Sbjct: 127 YFFIKQAAKHM---NPNGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQ 183
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDK 915
I V I G + T ++
Sbjct: 184 ISVNAIAPGPMDTSFFYGQETKESTAF 210
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 4e-49
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 9/227 (3%)
Query: 699 SISNAGTVNIVFG---NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLEN 755
S + GT N+ F L K+ +TG++SGIG K V GA+V RR D L+
Sbjct: 9 SGVDLGTENLYFQSMTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDA 68
Query: 756 LKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLE 815
+ G + + D ++ ++ +V AE G ID+L NAG + + E
Sbjct: 69 AIAEI---GGGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEE 125
Query: 816 EWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875
+++ + N+KGVL + LP + R ++ S AG +VY +K +
Sbjct: 126 QYDDTFDRNVKGVLFTVQKALPLL---ARGSSVVLTGSTAGSTGTPAFSVYAASKAALRS 182
Query: 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAV 922
+ ++ DR I++ + G +T L +D V + + A+
Sbjct: 183 FARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNAL 229
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 7e-49
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 4/205 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKK 771
NKV VTG+S GIG + L + G VV A + E + ++ A G + +
Sbjct: 24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQ 83
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV+ V+++ G +D+LVNNAG+M T + + ++ +I VN+KG +
Sbjct: 84 ADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNT 143
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ + R G I+N+S++ +Y K +E ++ L +E+ R+I V
Sbjct: 144 LREAAQRL---RVGGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGRDITV 200
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKY 916
+ G T+L +V D++
Sbjct: 201 NAVAPGPTATDLFLEGKSDEVRDRF 225
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 7e-49
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 1/190 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-AVARRIDRLENLKTSLQNAPGSIIVKKL 772
L KV+ +TGSS+G+G+ + T AKVV + D ++ ++ G I K
Sbjct: 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKG 64
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DVT+E+DV +V+ + E G +D+++NNAG+ + L +WN +I+ N+ G
Sbjct: 65 DVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGS 124
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ + + G ++N+SS P+ Y +K ++ ++ L E + + I+V
Sbjct: 125 REAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVN 184
Query: 893 CIQAGDVKTE 902
I G + T
Sbjct: 185 NIGPGAINTP 194
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 8e-49
Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 6/228 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L NKV+ VTG+ SGIG + K + VVAV DRL + L+ ++ K D
Sbjct: 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKAD 64
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCI 832
V+ + DV++ VR ID+L NNAG+M T + + E W ++ VN+ +
Sbjct: 65 VSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSS 124
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
++P ML + G I+N +S AG+R A YT K+ + G++ ++ D+ I+
Sbjct: 125 RAVIPIML-KQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAV 183
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL----TTKEISQSIIF 936
+ G VKT + S+ + ++K + + ++I+ I+F
Sbjct: 184 AVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVF 231
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255 | Back alignment and structure |
|---|
Score = 171 bits (437), Expect = 2e-48
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 2/203 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TG+ +GIG+++ T GA VV D ++ +Q G + D
Sbjct: 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCD 68
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+T E ++ + +++LG +DILVNNAG + + ++ +N+ H
Sbjct: 69 ITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFD-MPMADFRRAYELNVFSFFHLSQ 127
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ P M G IL I+S A + Y +K + + ++ ++NI+V
Sbjct: 128 LVAPEME-KNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNG 186
Query: 894 IQAGDVKTELLSHSTDRDVVDKY 916
I G + T+ L ++ K
Sbjct: 187 IAPGAILTDALKSVITPEIEQKM 209
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260 | Back alignment and structure |
|---|
Score = 171 bits (437), Expect = 2e-48
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 2/191 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L NKV VT S+ GIG + + L GA VV +R+ + ++ +LQ S+
Sbjct: 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCH 71
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCI 832
V D +++V + G +DILV+NA V +F + E W+ +++VN+K +
Sbjct: 72 VGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMT 131
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
++P M R G +L +SS PF L Y +K + G++ L E++ RNI+V
Sbjct: 132 KAVVPEME-KRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVN 190
Query: 893 CIQAGDVKTEL 903
C+ G +KT
Sbjct: 191 CLAPGLIKTNF 201
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 4e-48
Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 6/221 (2%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENLKTSLQNAPGSIIVKKLD 773
+KV VTG + GIG + + L G + ++ ++ ++ A + LD
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + + + E +LG D+LVNNAG+ + + E+ + +VN+ V I
Sbjct: 62 VTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQ 121
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
G I+N +S A ++ F L+ Y+ TK+ + G++ A QE++ + V
Sbjct: 122 AASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNA 181
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSI 934
G V T + ++ + I+ KE S SI
Sbjct: 182 YAPGIVGTGM----WEQIDAELSKINGKPIGENFKEYSSSI 218
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 4e-48
Identities = 58/254 (22%), Positives = 95/254 (37%), Gaps = 20/254 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI------ 767
LA +F+TG+S GIG+ + GA +V A+ L ++ A I
Sbjct: 43 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGK 102
Query: 768 -IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIK 826
+ +DV E + V + + + G IDILVNNA + T + + M+NVN +
Sbjct: 103 ALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTR 162
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--FAGLAVYTGTKYFIEGISGALRQEV 884
G +P + S+ HILNIS + P F YT KY + + +E
Sbjct: 163 GTYLASKACIPYLKKSKV-AHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEF 221
Query: 885 SDRNIKVTCIQAGD-VKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943
I V + + T + + + I+ + +P
Sbjct: 222 KG-EIAVNALWPKTAIHTAAMDMLGGPGIESQCR--------KVDIIADAAYSIFQKPKS 272
Query: 944 SAVNSILIEPPLAS 957
N ++ E L
Sbjct: 273 FTGNFVIDENILKE 286
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 4e-48
Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 4/229 (1%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
N + KV+ +TG SSG+G+ + GA+VV R ++LE K ++ PG I+ +
Sbjct: 2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQ 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+DV +D++K++ ++ + G IDIL+NNA + E + WN++IN+ + G +C
Sbjct: 62 MDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYC 121
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV-SDRNIK 890
I + G+I+N+ + G+ K + ++ L E I+
Sbjct: 122 SQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIR 181
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIF 936
V I G ++ + ++VP+ T +EI+ +
Sbjct: 182 VNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPEEIAGLAYY 230
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 6e-48
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 3/211 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKKL 772
NK VTGSS G+G+ L G + + AR ++ ++V K
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKA 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+V +K++ +++ G +D+ VNNA + + + W+ +N+N K +L C
Sbjct: 62 NVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCA 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
M GHI++ISS +R +K +E ++ L E+S + I V
Sbjct: 122 QEAAKLME-KNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVN 180
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+ G + T+ L H +R+ + D + P
Sbjct: 181 AVSGGAIDTDALKHFPNREDL-LEDARQNTP 210
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 6e-48
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 2/197 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
KV VTG+ IG L G + + + LE + S++ D
Sbjct: 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCD 64
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCI 832
VT E V V V+ + G ID L NNAG F ++ Y +++ ++ +N+ G H +
Sbjct: 65 VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVL 124
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ M+ ++ G I+N +S AGV+ +A Y +K I ++ +++ NI+V
Sbjct: 125 KAVSRQMI-TQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVN 183
Query: 893 CIQAGDVKTELLSHSTD 909
I G + +
Sbjct: 184 AISPGYMGPGFMWERQV 200
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 8e-48
Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 3/198 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL--QNAPGSIIVKK 771
L+ V VTG SSGIG V+ L+ GA V AR +RL +++L + +
Sbjct: 6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASV 65
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV V+ LG ILVNNAG + + E W+ + + V+H
Sbjct: 66 CDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHP 125
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ LP + I+ ++S +P + + + ++ + ++ E + + ++V
Sbjct: 126 VRAFLPQLESRAD-AAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRV 184
Query: 892 TCIQAGDVKTELLSHSTD 909
I G V++ +
Sbjct: 185 NGILIGLVESGQWRRRFE 202
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 1e-47
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 7/202 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV +TG+ SG GE + K GAKVV V R E + + + + D
Sbjct: 7 LEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---GDAALAVAAD 63
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCI 832
++ E DV V L++ G +DILVNNAG+ + E + EE++ ++ VN++GV
Sbjct: 64 ISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMT 123
Query: 833 GNILPSMLHS---RRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
++P + + ILN++S RP LA Y TK ++ ++ AL E++ I
Sbjct: 124 SKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIELAPAKI 183
Query: 890 KVTCIQAGDVKTELLSHSTDRD 911
+V + +T LL+ D
Sbjct: 184 RVVALNPVAGETPLLTTFMGED 205
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 2e-47
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 4/210 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L + V VTG+++GIG + GA VV + + E + +++ A G I + +
Sbjct: 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECN 69
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT E + V++ L + G I +LVNNAG + ++ +N+ +
Sbjct: 70 VTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPF-DMPMSDFEWAFKLNLFSLFRLSQ 128
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
P M G ILNISS AG +A Y +K + ++ + +V I+V
Sbjct: 129 LAAPHMQ-KAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNA 187
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I G +KT+ L+ ++ + K P
Sbjct: 188 IAPGAIKTDALATVLTPEIERA--MLKHTP 215
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 2e-47
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 6/197 (3%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS---II 768
L +VI VTG++ GIG + GA VV + R L + +++A II
Sbjct: 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLII 69
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKG 827
L+ +++ V E G +D L++NA ++ T +E+ E++ +++VN+
Sbjct: 70 ALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNA 129
Query: 828 VLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD- 886
+LP + S I SS+ G + A Y +K+ EG+ L E+
Sbjct: 130 TFMLTRALLPLLKRSED-ASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADELEGV 188
Query: 887 RNIKVTCIQAGDVKTEL 903
++ I G +T +
Sbjct: 189 TAVRANSINPGATRTGM 205
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 2e-47
Identities = 49/229 (21%), Positives = 102/229 (44%), Gaps = 4/229 (1%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVK 770
N+ KV F+TG +G+G+ + L +LGA+ V +R++D L+ + + G +
Sbjct: 22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAI 81
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+ DV + V+ V E++ GH +I++NNA + + E+ W + ++ + G
Sbjct: 82 QCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAF 141
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
I ++ +++ L+I++ + K +E +S +L E ++
Sbjct: 142 VTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMR 201
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIF 936
IQ G +KT+ D + ++ +P T +E++ F
Sbjct: 202 FNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAF 250
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 3e-47
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 4/213 (1%)
Query: 714 LANKVIFVTG-SSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKK 771
L KV+ VT + +GIG + + GA VV RL + L + G +
Sbjct: 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVV 79
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DVT V ++ + + + G +D+LVNNAG+ T + EEW+ ++NV + V+
Sbjct: 80 CDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRA 139
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
L G I+N +S G R + Y K + ++ E + +++
Sbjct: 140 TRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRI 199
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ + + L ++ +++D+ ++
Sbjct: 200 NAVSPSIARHKFLEKTSSSELLDR--LASDEAF 230
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 3e-47
Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 6/196 (3%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS---II 768
+ L +++I VTG+S GIG + GA V+ + R ++L + + + G
Sbjct: 8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWF 67
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKG 827
+ L + +++ + + +D +++NAG++ M + + W ++ VN+
Sbjct: 68 ILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNA 127
Query: 828 VLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
+LP +L S G ++ SS+ G + A Y +K+ EG+ L E +
Sbjct: 128 TFMLTQALLPLLLKSDA-GSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQ-Q 185
Query: 888 NIKVTCIQAGDVKTEL 903
++V CI G +T +
Sbjct: 186 RLRVNCINPGGTRTAM 201
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 3e-47
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 7/227 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K + VTG + GIG +V++ GA + AR L + Q + D
Sbjct: 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCD 71
Query: 774 VTIENDVKKVVREVLAELGH-IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
++ + +K+++ V + G +DIL+NN G + Y E+++ I+ N++ H
Sbjct: 72 ASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLS 131
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P + S G+I+ +SS AGV + ++Y+ TK + ++ L E + I+
Sbjct: 132 QLAHPLLKASGC-GNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRAN 190
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIF 936
+ + T L D + + P +E+S + F
Sbjct: 191 AVAPAVIATPLAEAVYDDEFKKV--VISRKPLGRFGEPEEVSSLVAF 235
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 3e-47
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 22/237 (9%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL--QNAPGSIIVKK 771
+ KV VTG++ GIG + L+ GAKV V ++ K +L Q P + +
Sbjct: 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 64
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV + ++ R+V+ G +DILVNNAGV + W + +N+ V+
Sbjct: 65 CDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN--------NEKNWEKTLQINLVSVISG 116
Query: 832 IGNILPSML--HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI--SGALRQEVSDR 887
L M + G I+N+SS AG+ P A VY +K+ I G S AL + +
Sbjct: 117 TYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNS 176
Query: 888 NIKVTCIQAGDVKTELLSHSTDRDVVDKYD-----ISKAVP---VLTTKEISQSIIF 936
+++ I G V T +L + + +Y I + +L I+ +I
Sbjct: 177 GVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLIT 233
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 4e-47
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 7/194 (3%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENLKTSLQNAPGSIIVK 770
LA KV TG+ GIG + +L GA VV V E + L+ +
Sbjct: 18 PLAGKVALTTGAGRGIGRGIAIELGRRGASVV-VNYGSSSKAAEEVVAELKKLGAQGVAI 76
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+ D++ ++V + + ++ G +D +++N+G+ + + E ++ + N+N +G
Sbjct: 77 QADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFF 136
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
L RR G I+ SS A V A+Y G+K +EG A + + +
Sbjct: 137 VAQQGLKHC---RRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGV 193
Query: 890 KVTCIQAGDVKTEL 903
V CI G VKT++
Sbjct: 194 TVNCIAPGGVKTDM 207
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 4e-47
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 6/214 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA---PGSIIVK 770
++ VTG SGIG+ + LV GA V+ V R D+L L+ G+I +
Sbjct: 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYE 68
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVL 829
D+T E++ + V V A G + +V+ AG + + E W +++N+ G +
Sbjct: 69 PTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTM 128
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ + + M+ G + ISS A Y TK ++ + E+ +
Sbjct: 129 YVLKHAAREMV-RGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELGASWV 187
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+V I+ G ++T+L++ T+ + D + P
Sbjct: 188 RVNSIRPGLIRTDLVAAITESAELSS-DYAMCTP 220
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 5e-47
Identities = 52/193 (26%), Positives = 99/193 (51%), Gaps = 5/193 (2%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKK 771
+LA K FVTG S GIG + K L GA V +R + + + ++ A G + +
Sbjct: 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIR 87
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D +++ +RE + LG +DILVN+AG+ + +E+ + +++ ++ VN +
Sbjct: 88 ADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVA 147
Query: 832 IGNILPSMLHSRRPGHILNISSN-AGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
I + + G I+ I SN A + P+ G+++Y+ +K + G++ L +++ R I
Sbjct: 148 IRSASRHL---GDGGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGPRGIT 204
Query: 891 VTCIQAGDVKTEL 903
V + G T++
Sbjct: 205 VNIVHPGSTDTDM 217
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 6e-47
Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 2/191 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L VTG S GIG +V++L LGA+V +R L+ + ++ D
Sbjct: 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCD 78
Query: 774 VTIENDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+ + K+++ V G ++ILVNNAGV+ + + +++N ++ N + H
Sbjct: 79 LLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLS 138
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P + S+ G+++ +SS AG +++Y+ +K I ++ +L E + NI+V
Sbjct: 139 QIAYPLLKASQN-GNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVN 197
Query: 893 CIQAGDVKTEL 903
+ G + T L
Sbjct: 198 SVAPGVILTPL 208
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 6e-47
Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 2/191 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L VTG S GIG +V++L +LGA V +R L + T ++ + D
Sbjct: 7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCD 66
Query: 774 VTIENDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
++ ++ ++++ V G ++ILVNNAG++ + + Y +E+++ ++++N + H
Sbjct: 67 LSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLS 126
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P + S R G+++ ISS +G AVY TK ++ ++ L E + NI+V
Sbjct: 127 VLAHPFLKASER-GNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVN 185
Query: 893 CIQAGDVKTEL 903
+ G + T L
Sbjct: 186 GVGPGVIATSL 196
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 6e-47
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 9/193 (4%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI----- 767
+L K +F++G S GIG + K + GA V VA+ + L ++ A I
Sbjct: 6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG 65
Query: 768 --IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNI 825
+ D+ + V V + + + G IDI VNNA + +E+ L+ ++ M + +
Sbjct: 66 QALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQV 125
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP-FAGLAVYTGTKYFIEGISGALRQEV 884
+G + +P M HIL +S + P + Y KY + + + +E+
Sbjct: 126 RGTYAVSQSCIPHMKGRDN-PHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEEL 184
Query: 885 SDRNIKVTCIQAG 897
D I +
Sbjct: 185 RDAGIASNTLWPR 197
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 8e-47
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 10/192 (5%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI----- 767
TL+ K +F+TG+S GIG + GA V A+ L ++ +A ++
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62
Query: 768 --IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNI 825
+ K D+ E+ V+ V + G IDILVNNA ++ ++ ++ M VN
Sbjct: 63 QGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNA 122
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--FAGLAVYTGTKYFIEGISGALRQE 883
+G C LP +L + HIL ++ + P + YT K + ++ L E
Sbjct: 123 RGSFVCAQACLPHLLQAPN-PHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAE 181
Query: 884 VSDRNIKVTCIQ 895
+ + + +
Sbjct: 182 FGPQGVAINALW 193
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 1e-46
Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 7/194 (3%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENLKTSLQNAPGSIIVK 770
+L KV VTG+ GIG ++ +L G KV+ V A + E + +++
Sbjct: 26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVI-VNYANSTESAEEVVAAIKKNGSDAACV 84
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
K +V + D+ ++ E + G +DI+ +N+GV+ F ++ EE++ + +N +G
Sbjct: 85 KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFF 144
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ G ++ + S G AVY+G+K IE + + +++D+ I
Sbjct: 145 VAREAYKHL---EIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKI 201
Query: 890 KVTCIQAGDVKTEL 903
V + G +KT++
Sbjct: 202 TVNVVAPGGIKTDM 215
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263 | Back alignment and structure |
|---|
Score = 166 bits (424), Expect = 1e-46
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 2/192 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKL 772
++ KV +TGSSSGIG + + GA +V VAR++DRL SL+ G ++ +
Sbjct: 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAV 64
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV V VV V + G DILVNNAG + + E+W + + +
Sbjct: 65 DVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLA 124
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
++P M +R G I++ +S V+P +Y TK + S L EV NI+V
Sbjct: 125 RGLVPGMR-ARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIKDNIRVN 183
Query: 893 CIQAGDVKTELL 904
CI G + T
Sbjct: 184 CINPGLILTPDW 195
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 1e-46
Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 3/204 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV +TG + GIG + V GAKV+ R D E S+ P I + D
Sbjct: 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV-GTPDQIQFFQHD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ E+ K+ G + LVNNAG+ +E+ EW ++ VN+ GV
Sbjct: 63 SSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTR 122
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI--SGALRQEVSDRNIKV 891
+ M + I+N+SS G L Y +K + + S AL + D +++V
Sbjct: 123 LGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRV 182
Query: 892 TCIQAGDVKTELLSHSTDRDVVDK 915
+ G +KT L+ +
Sbjct: 183 NTVHPGYIKTPLVDDLPGAEEAMS 206
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 1e-46
Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 4/211 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +K+ +TG ++GIG + + GA + + +++N ++ K D
Sbjct: 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADL--VPAPEAEAAIRNLGRRVLTVKCD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ DV+ ++V++ G DILVNNAG+ ++ E+W +N+
Sbjct: 63 VSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAK 122
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+P M G I+N++S Y TK G + AL ++ I V
Sbjct: 123 AFVPGMK-RNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKDGITVNA 181
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
I V+T S + + +
Sbjct: 182 IAPSLVRTATTEASAL-SAMFDVLPNMLQAI 211
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 1e-46
Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 16/221 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ K ++VTG+ GIG V GAKV + + + +D
Sbjct: 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ----------EQYPFATEVMD 54
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V V +V + +LAE +D LVN AG++ ++ E+W VN+ G +
Sbjct: 55 VADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQ 114
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ +R G I+ ++S+A P G++ Y +K ++ ++ ++ E++ ++
Sbjct: 115 QTMNQFR-RQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRCNV 173
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSI 934
+ G T++ R + D + ++ I
Sbjct: 174 VSPGSTDTDMQ-----RTLWVSDDAEEQRIRGFGEQFKLGI 209
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-46
Identities = 65/214 (30%), Positives = 95/214 (44%), Gaps = 9/214 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
NKV VTGS GIG+ + L GA VV + E + + G+ I +D
Sbjct: 7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFT---LMEKYKLEEWNAMINVNIKGVLH 830
V+ K + LAE G ID LVNNA + + E + ++VN+ G L
Sbjct: 67 VSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALW 126
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
C + M R G I+N SS A Y K I G++ L +E+ RNI+
Sbjct: 127 CTRAVYKKMT-KRGGGAIVNQSSTAAWL---YSNYYGLAKVGINGLTQQLSRELGGRNIR 182
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ I G + TE +T +++VD I K +P+
Sbjct: 183 INAIAPGPIDTEANRTTTPKEMVDD--IVKGLPL 214
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277 | Back alignment and structure |
|---|
Score = 166 bits (424), Expect = 2e-46
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 4/191 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +V VTG SGIG + GA VV D + + ++D
Sbjct: 25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---GSKAFGVRVD 81
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ D + +V + A+ G +D+LVNNAG + E W+ +++VN+KG+ C
Sbjct: 82 VSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSK 141
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
++P M + G I+N +S A Y +K I ++ A+ + + I+V
Sbjct: 142 YVIPVMRRNGG-GSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNA 200
Query: 894 IQAGDVKTELL 904
+ G + +
Sbjct: 201 VAPGTIDSPYF 211
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-46
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 12/201 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
KV VTG++ GIG +V L GA+V R + + + + D
Sbjct: 26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA-----------ADLHLPGD 74
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ + V A LG +DI+VNNAGV+ + + +W+ + VN++
Sbjct: 75 LREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICR 134
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+P M + G I+N++S G+RP G A+Y TK + ++ + + + + I++
Sbjct: 135 AAIPLMAAAGG-GAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAPQGIRINA 193
Query: 894 IQAGDVKTELLSHSTDRDVVD 914
+ +V T +L + D
Sbjct: 194 VCPNEVNTPMLRTGFAKRGFD 214
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 4e-46
Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 4/200 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
N L+ K + +TG + G+G + + V GA+VV + L + +
Sbjct: 1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---GDAARYQH 57
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
LDVTIE D ++VV E G +D LVNNAG+ +E +E + ++ +N+ GV
Sbjct: 58 LDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIG 117
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ ++P+M + G I+NISS AG+ A + Y +K+ + G+S E+ I+V
Sbjct: 118 MKTVIPAMKDAGG-GSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRV 176
Query: 892 TCIQAGDVKTELLSHSTDRD 911
+ G T + + + R
Sbjct: 177 NSVHPGMTYTPMTAETGIRQ 196
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 6e-46
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 8/190 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA + + VTG+ GIG V+ L GA+VVAV+R L++L I +D
Sbjct: 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----PGIEPVCVD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ ++ + +G +D+LVNNA V + E ++ VN++ V+
Sbjct: 61 LGDWEATERAL----GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQ 116
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ ++ PG I+N+SS R +VY TK ++ ++ + E+ I+V
Sbjct: 117 IVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNA 176
Query: 894 IQAGDVKTEL 903
+ V T +
Sbjct: 177 VNPTVVMTSM 186
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 7e-46
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 4/198 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA KV VTG+ +GIG + + L G V+ D + T + ++D
Sbjct: 27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---GCGAAACRVD 83
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ E + +V +A G +D LV NAGV++ + +E+++ +I +N++G C
Sbjct: 84 VSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTK 143
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ P M+ G I+N+SS AG G Y +K I +S E+ I+
Sbjct: 144 HAAPRMIERGG-GAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNT 202
Query: 894 IQAGDVKTELLSHSTDRD 911
+ V T + +
Sbjct: 203 LLPAFVDTPMQQTAMAMF 220
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 8e-46
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ VTG+ GIG VK L GAKVVAV R L SL I +D
Sbjct: 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLV----SLAKECPGIEPVCVD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ + +K + +G +D+LVNNA ++ + E ++ +VN++ V
Sbjct: 61 LGDWDATEKAL----GGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQ 116
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ M++ PG I+N+SS F L Y+ TK + ++ A+ E+ I+V
Sbjct: 117 MVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNS 176
Query: 894 IQAGDVKTEL 903
+ V T++
Sbjct: 177 VNPTVVLTDM 186
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 8e-46
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 7/195 (3%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENLKTSLQNAPGSIIV 769
L KV VTGS GIG + L LGAKVV V A E + + ++ I
Sbjct: 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVV-VNYANSTKDAEKVVSEIKALGSDAIA 72
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
K D+ ++ K+ + +A GH+DI V+N+GV+ F ++ EE++ + ++N +G
Sbjct: 73 IKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQF 132
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ G I+ SSN ++Y+G+K ++ ++ D+
Sbjct: 133 FVAREAYRHL---TEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKK 189
Query: 889 IKVTCIQAGDVKTEL 903
I V + G T++
Sbjct: 190 ITVNAVAPGGTVTDM 204
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 1e-45
Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 4/200 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKK 771
++V+ +TG SG+G L GAK+ V + LE K ++ ++
Sbjct: 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTV 70
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLH 830
DV+ E V+ V G ID NNAG+ E + E++ ++++N++GV
Sbjct: 71 ADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFL 130
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ +L M G ++N +S G+R + Y K+ + G++ E I+
Sbjct: 131 GLEKVLKIMREQGS-GMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIR 189
Query: 891 VTCIQAGDVKTELLSHSTDR 910
+ I G + T ++ +S +
Sbjct: 190 INAIAPGAIWTPMVENSMKQ 209
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 1e-45
Identities = 64/237 (27%), Positives = 113/237 (47%), Gaps = 15/237 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPG-SIIVKK 771
L KV VTGS+SGIG + L GA +V +E ++ L G ++
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D++ V+ +V + ++G IDILVNNAG+ + L+E + E+W+A++ +N+ V H
Sbjct: 62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHG 121
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
LP M + G I+NI+S G+ A + Y K+ + G + E + + I
Sbjct: 122 TAAALPHMK-KQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITA 180
Query: 892 TCIQAGDVKTELL---------SHSTDRDVVDKYDISKAVPV---LTTKEISQSIIF 936
I G V+T L+ + D++ + +S+ P +T +++ + +F
Sbjct: 181 NAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVF 237
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 1e-45
Identities = 61/248 (24%), Positives = 118/248 (47%), Gaps = 14/248 (5%)
Query: 699 SISNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENL 756
S + GT N+ F + V+ VTG S GIG + + G +V V A + + +
Sbjct: 9 SGVDLGTENLYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVG-VNYAANREAADAV 67
Query: 757 KTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF-TLMEKYKLE 815
++ + G + DV D+ + V + G +D LVNNAG++ + +++ +E
Sbjct: 68 VAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVE 127
Query: 816 EWNAMINVNIKGVLHCIGNILPSML--HSRRPGHILNISSNAGVRPFAG-LAVYTGTKYF 872
M+ VN+ G + C + M +S + G I+N+SS A + A Y +K
Sbjct: 128 RIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAA 187
Query: 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL----TTK 928
I+ + L +EV+ I+V ++ G ++T+L + D + ++ +VP + +
Sbjct: 188 IDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRARE--MAPSVP-MQRAGMPE 244
Query: 929 EISQSIIF 936
E++ +I++
Sbjct: 245 EVADAILY 252
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 2e-45
Identities = 51/198 (25%), Positives = 97/198 (48%), Gaps = 5/198 (2%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENL-KTSLQNAPGSIIVKKLDV 774
++V VTG+SSG G + + G +V A+ + LE +T ++ + DV
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADV 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVM---YFTLMEKYKLEEWNAMINVNIKGVLHC 831
E DV + + + G ID+LVNNAG+ ++ +E+++ ++ VN++G+
Sbjct: 62 ADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLG 121
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+LP ML G I+NI+S A + F G + YT +K + ++ ++ + + I+
Sbjct: 122 CRAVLPHMLLQGA-GVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRC 180
Query: 892 TCIQAGDVKTELLSHSTD 909
+ G ++T + D
Sbjct: 181 NAVCPGMIETPMTQWRLD 198
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 3e-45
Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 6/218 (2%)
Query: 699 SISNAGTVNIVFGN--TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENL 756
S + GT N+ F + + V +TG+ SGIG L G V A+ R +E +
Sbjct: 9 SGVDLGTENLYFQSMMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEV 68
Query: 757 KTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLE 815
+ A G I + DV+ E ++ VR+++ + GH+DI+V NAG+ + ++ K
Sbjct: 69 ADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPF 128
Query: 816 EWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA--GLAVYTGTKYFI 873
EW+ I VN++G + +P + R G I+ +SS G R F G YT TK
Sbjct: 129 EWDETIAVNLRGTFLTLHLTVPYLK-QRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQ 187
Query: 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD 911
I L E+ +I+V + G ++T + ++ R
Sbjct: 188 VAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRH 225
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 4e-45
Identities = 58/239 (24%), Positives = 109/239 (45%), Gaps = 15/239 (6%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPG-SIIV 769
++ K +TGS+SGIG + + L GA +V D + + + +++
Sbjct: 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLH 80
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
D+T +++ ++ V G DILVNNAGV + +E + +E+W+ +I VN+
Sbjct: 81 HPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSF 140
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
H I +P M + G I+NI+S G+ + Y K+ I G++ + EV++ +
Sbjct: 141 HTIRGAIPPMK-KKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGV 199
Query: 890 KVTCIQAGDVKTELL---------SHSTDRDVVDKYDISKAVPV---LTTKEISQSIIF 936
V I G V T L+ + + V + K P +T ++++ ++
Sbjct: 200 TVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALY 258
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 4e-45
Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 5/229 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS-IIVK 770
+ L +KV F+TG SGIG ++ + + G V +R + R+ L A G +
Sbjct: 23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPL 82
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+DV V V + L E G IDIL+N A + + +++++ G +
Sbjct: 83 SMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFN 142
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ G I+NI++ G R A K ++ ++ L E +NI+
Sbjct: 143 VSRVLYEKFF-RDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIR 201
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL---TTKEISQSIIF 936
V + G + A P+ EI+ S+++
Sbjct: 202 VNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLY 250
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 5e-45
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 7/199 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
A KV+ VTG GIG +V+ V GA+VV + L+ L A + D
Sbjct: 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGA----VFILCD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCI 832
VT E+DVK +V E + G +D +VNNAG E+ + + ++ +N+ G
Sbjct: 63 VTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLT 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LP + + G+++NISS G A Y TK + ++ AL + S ++V
Sbjct: 123 KLALPYLR--KSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVN 180
Query: 893 CIQAGDVKTELLSHSTDRD 911
CI G++ T L
Sbjct: 181 CISPGNIWTPLWEELAALM 199
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 6e-45
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 4/197 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV V+G + G+G V+ +V GAKVV + + + L + LD
Sbjct: 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---ADAARYVHLD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT K V + G + +LVNNAG++ +E Y L EW +++VN+ GV I
Sbjct: 62 VTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIR 121
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
++ M + R G I+NISS G+ YT TK+ + G++ + E+ I+V
Sbjct: 122 AVVKPMKEAGR-GSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNS 180
Query: 894 IQAGDVKTELLSHSTDR 910
I G VKT + +
Sbjct: 181 IHPGLVKTPMTDWVPED 197
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 6e-45
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 4/210 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
TL K VTGS+SGIG + + L GA +V + +
Sbjct: 1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGF--GDPAPALAEIARHGVKAVHHPA 58
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D++ ++ + E G +DILVNNAG+ + +E++ LE W+ +I +N+ V H
Sbjct: 59 DLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGT 118
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LP M +R G I+NI+S G+ G A Y K+ + G++ + E + N+
Sbjct: 119 RLALPGMR-ARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCN 177
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAV 922
I G V T L+ D D
Sbjct: 178 AICPGWVLTPLVQKQID-DRAANGGDPLQA 206
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 6e-45
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 6/205 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L NKV +TG+ GIG + + L GA+VV L + + +D
Sbjct: 9 LENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGA---AASVGRGAVHHVVD 65
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYF--TLMEKYKLEEWNAMINVNIKGVLHC 831
+T E V+ ++ + G +DI+ NNA L+ + ++ W+ VN +G +
Sbjct: 66 LTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLM 125
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+P ++ + G I+NISS + Y TK IE ++ + + ++
Sbjct: 126 CKYAIPRLISAGG-GAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGRHGVRC 184
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKY 916
I G V+T L + +VD +
Sbjct: 185 NAIAPGLVRTPRLEVGLPQPIVDIF 209
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 6e-45
Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 23/251 (9%)
Query: 693 TNKQGISISNAGTVNIVFGN--TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI 750
+ S + GT N+ F + KV+ +TG+S GIG LV+ +VVA +R I
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSI 62
Query: 751 DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLME 810
A I D++ ++VRE + G ID LVNNAGV
Sbjct: 63 KPS---------ADPDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFV 113
Query: 811 KYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA--VYTG 868
+ E+++ + VN+ G H ML + GHI++I+++ +P G+ + +
Sbjct: 114 EMTQEDYDHNLGVNVAGFFHITQRAAAEML-KQGSGHIVSITTSLVDQPMVGMPSALASL 172
Query: 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL--- 925
TK + ++ +L E S ++V + G +KT + + ++ PV
Sbjct: 173 TKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPM----HPAETHST--LAGLHPVGRMG 226
Query: 926 TTKEISQSIIF 936
+++ ++++
Sbjct: 227 EIRDVVDAVLY 237
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 7e-45
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 13/204 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-------------ARRIDRLENLKTSL 760
L +V F+TG++ G G + GA ++AV D L +
Sbjct: 9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLV 68
Query: 761 QNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAM 820
+ A I+ +D + ++KVV + +A LG +DI+V NAGV + E++ +
Sbjct: 69 EAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDV 128
Query: 821 INVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGAL 880
+++N+ G + + P ++ R G I+ ISS AG++ + YT +K+ + G++ A
Sbjct: 129 MDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAF 188
Query: 881 RQEVSDRNIKVTCIQAGDVKTELL 904
E+ +I+V + G V T +
Sbjct: 189 AAELGKHSIRVNSVHPGPVNTPMG 212
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 1e-44
Identities = 49/245 (20%), Positives = 112/245 (45%), Gaps = 22/245 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-------------ARRIDRLENLKTSL 760
L +V F+TG++ G G L GA ++A + L+ +
Sbjct: 13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLV 72
Query: 761 QNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAM 820
++ + + LDV + ++++V + + + G +D++V NAGV+ + + + E+W+ +
Sbjct: 73 EDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTV 132
Query: 821 INVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGAL 880
I VN+ G + +P+M+ + G I+ +SS+AG++ G Y+ +K+ + ++ L
Sbjct: 133 IGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTL 192
Query: 881 RQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKA---------VPVLTTKEIS 931
E+ + I+V I V+T ++ ++ ++ +T E++
Sbjct: 193 AIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEVA 252
Query: 932 QSIIF 936
+ +
Sbjct: 253 DVVAW 257
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 2e-44
Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 11/201 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +V +TG +SG+G LV V GA+V + + +RL L+ + G+ + D
Sbjct: 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH---GGNAVGVVGD 59
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLM-----EKYKLEEWNAMINVNIKGV 828
V D K+ LA G ID L+ NAG+ ++ E ++ + +VN+KG
Sbjct: 60 VRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGY 119
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+H + LP+++ SR G ++ SNAG P G +YT TK+ + G+ + E++ +
Sbjct: 120 IHAVKACLPALVSSR--GSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELA-PH 176
Query: 889 IKVTCIQAGDVKTELLSHSTD 909
++V + G + T+L S+
Sbjct: 177 VRVNGVAPGGMNTDLRGPSSL 197
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 2e-44
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 4/193 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L N+V VTG + IG V L GA+V+ L+ + +D
Sbjct: 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMD 70
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCI 832
VT V+ VR V + G +DILV AG+ E +W +++N+ G+
Sbjct: 71 VTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSC 130
Query: 833 GNILPSMLHSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ ML ++ G I+ I S +G V A Y +K + +L E + I+
Sbjct: 131 QAVGRIML-EQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIR 189
Query: 891 VTCIQAGDVKTEL 903
+ ++T L
Sbjct: 190 ANAVAPTYIETTL 202
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 3e-44
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 8/197 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS---IIVK 770
+ K + +TGSS+GIG GA+V R DRLE K + A I
Sbjct: 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAV 83
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF--TLMEKYKLEEWNAMINVNIKGV 828
DVT + ++ LA+ G IDILVNNAG T +E + +N + V
Sbjct: 84 VADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAV 143
Query: 829 LHCIGNILPSMLHSRRPGHILNISS-NAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
+ ++ ++ G I+N+SS AG + +G Y K ++ + ++
Sbjct: 144 IEMTQKTKEHLIKTK--GEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQH 201
Query: 888 NIKVTCIQAGDVKTELL 904
++V + G V T +
Sbjct: 202 GVRVNSVSPGAVATGFM 218
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 4e-44
Identities = 45/215 (20%), Positives = 81/215 (37%), Gaps = 9/215 (4%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVK 770
N+ I V G+ IG GA V + + ++ S +
Sbjct: 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAI 63
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVL 829
K D+T +V+ + + G I LV+ AG + + + W+ +++VN+ +
Sbjct: 64 KADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLF 123
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
LP M G I+ SS AG G Y +K + + L +EV +
Sbjct: 124 LTAKTALPKMAKG---GAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEVGPK- 179
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I+V + G + T T +V ++ ++ A
Sbjct: 180 IRVNAVCPGMISTTFHDTFTKPEVRER--VAGATS 212
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 5e-44
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 7/191 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
A K + VTG + GIG + + GA V R + E + A G + +D
Sbjct: 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-----VAEAIGGAFFQ-VD 57
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ E + + V E LG +D+LVNNA + +L EW ++ VN+ +H
Sbjct: 58 LEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSA 117
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
M G I+N++S G+ A Y +K + ++ +L +++ I+V
Sbjct: 118 LAAREMRKVGG-GAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNA 176
Query: 894 IQAGDVKTELL 904
+ G + TE +
Sbjct: 177 VAPGAIATEAV 187
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 5e-44
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 12/209 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+KV VTG SSGIG +V LV GAKVV+V+ N+ K+D
Sbjct: 12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF----------KID 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT E +VK+ V + + G IDILVNNAG+ ++ + E W +I+VN+ G
Sbjct: 62 VTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAK 121
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+P ML G I+NI+S A Y +K+ + G++ ++ + + I+
Sbjct: 122 YTIPVMLAIGH-GSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYA-PKIRCNA 179
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAV 922
+ G + T ++ + +V + + +
Sbjct: 180 VCPGTIMTPMVIKAAKMEVGEDENAVERK 208
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 6e-44
Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 2/192 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L+ K +TG+S+GIG+++ GA+V AR D L+ + + G + + D
Sbjct: 30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCD 89
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + V+ ++ ++ ELG IDI V NAG++ M LEE+ + + N+ GV
Sbjct: 90 VTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQ 149
Query: 834 NILPSMLHSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+M+ G I+ +S +G + ++ Y +K + ++ A+ E++ I+V
Sbjct: 150 AAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRV 209
Query: 892 TCIQAGDVKTEL 903
+ G ++TEL
Sbjct: 210 NSVSPGYIRTEL 221
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 8e-44
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 24/215 (11%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS---II 768
A KV +TGSS+GIG GAKV R +RLE + + A S +
Sbjct: 2 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVN 61
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVN 824
DVT + +++ L + G +DILVNNAG +E ++A +N+N
Sbjct: 62 SVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLN 121
Query: 825 IKGVLHCIGNILPSMLHSRRPGHILNISS-NAGVRPFAGLAVYTGTKYFIEGISGALRQ- 882
++ V+ +P + ++ G I+NISS +G+ Y+ K A+ Q
Sbjct: 122 LRSVIALTKKAVPHLSSTK--GEIVNISSIASGLHATPDFPYYSIAK-------AAIDQY 172
Query: 883 ------EVSDRNIKVTCIQAGDVKTELLSHSTDRD 911
++ I+V I G V T S +
Sbjct: 173 TRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPE 207
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 1e-43
Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 10/217 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKL 772
L K + +TGSS GIG + GAKV R+ ++ S++ G
Sbjct: 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAA 64
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHC 831
D+ +++V E +A+ G ID+L+NNAG + + + ++A+++ NI+ V+
Sbjct: 65 DLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMT 124
Query: 832 IGNILPSML----HSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSD 886
LP + S + +++ S AG G +Y K F+ + +
Sbjct: 125 TKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDFHTK 184
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
++ + G V T + T DV D+ IS +P
Sbjct: 185 DGVRFNIVSPGTVDTAFHADKTQ-DVRDR--ISNGIP 218
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 1e-43
Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 3/200 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K+ VTG+SSGIG GAKVV AR + L L + G D
Sbjct: 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGD 65
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCI 832
V E + +V + G +D NNAG + + +E W ++ N+
Sbjct: 66 VGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAA 125
Query: 833 GNILPSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+P++ G + SS G FAG+A Y +K + G+ AL E+ R I+V
Sbjct: 126 KYQVPAIAALGG-GSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRV 184
Query: 892 TCIQAGDVKTELLSHSTDRD 911
+ G T +
Sbjct: 185 NALLPGGTDTPANFANLPGA 204
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 2e-43
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 10/210 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA---PGSIIVK 770
+NK + +TGSS+GIG GA V R +RLE + + + +
Sbjct: 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSV 63
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEE----WNAMINVNIK 826
DVT E+ +++ L + G ID+LVNNAG ++ ++ + +N++
Sbjct: 64 VADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQ 123
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSN-AGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
V+ + P ++ S+ G I+N+SS AG + Y K ++ + + +++
Sbjct: 124 AVIEMTKKVKPHLVASK--GEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLA 181
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDK 915
I+V + G V+T + D +
Sbjct: 182 KFGIRVNSVSPGMVETGFTNAMGMPDQASQ 211
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 7e-43
Identities = 37/192 (19%), Positives = 80/192 (41%), Gaps = 14/192 (7%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+ A VTG S GIG+ +V+ L+ V + I + + ++ K
Sbjct: 1 SNAMANYLVTGGSKGIGKAVVELLLQNKNHTV-INIDIQQ--------SFSAENLKFIKA 51
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D+T + D+ V+ + D + NAG++ + +E ++++N+ ++ I
Sbjct: 52 DLTKQQDITNVLDI--IKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFI 109
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ ++ + I+ S+ YT +K I ++ +L +++ I+V
Sbjct: 110 KGLENNL---KVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVN 166
Query: 893 CIQAGDVKTELL 904
+ G V T+L
Sbjct: 167 TVCPGTVDTDLY 178
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 8e-43
Identities = 52/234 (22%), Positives = 105/234 (44%), Gaps = 11/234 (4%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ-----NAPGS 766
L +V VTG ++GIG+ +VK+L+ LG+ VV +R+++RL++ LQ
Sbjct: 14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQAR 73
Query: 767 IIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIK 826
+I + ++ E +V +V+ L G I+ LVNN G + + E + W+A++ N+
Sbjct: 74 VIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLT 133
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
G + + S + G I+NI F + + ++ +L E +
Sbjct: 134 GTFYMCKAVYSSWM-KEHGGSIVNIIV-PTKAGFPLAVHSGAARAGVYNLTKSLALEWAC 191
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVL---TTKEISQSIIF 936
I++ C+ G + ++ + ++ + +P +E+S + F
Sbjct: 192 SGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCF 245
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 8e-43
Identities = 59/231 (25%), Positives = 115/231 (49%), Gaps = 10/231 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +KV +TG + GIGE K V GAKVV D + + ++ +P I D
Sbjct: 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI-GSPDVISFVHCD 72
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTL--MEKYKLEEWNAMINVNIKGVLHC 831
VT + DV+ +V +A+ G +DI+ N GV+ T + + E++ ++++N+ G
Sbjct: 73 VTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLV 132
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLA-VYTGTKYFIEGISGALRQEVSDRNIK 890
+ M+ +++ G I+ +S + G++ VYT TK+ + G++ +L E+ + I+
Sbjct: 133 AKHAARVMIPAKK-GSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGIR 191
Query: 891 VTCIQAGDVKTELLSH--STDRDVVDKYDISKAVP---VLTTKEISQSIIF 936
V C+ V + LL+ D V++ A +L ++++ ++ +
Sbjct: 192 VNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAY 242
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 8e-43
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 3/213 (1%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
+ + FVTG SSGIG + + L G V AR + L+ A +
Sbjct: 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSS 79
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DVT ++V V + G I ILVN+AG W +++ N+ GV
Sbjct: 80 CDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRV 139
Query: 832 IGNILPS--MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+L + M G I+NI+S G + A YT +K+ + G + ++ E++ I
Sbjct: 140 TREVLRAGGMR-EAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELAKTGI 198
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAV 922
V + G V+T + + + V
Sbjct: 199 TVNAVCPGYVETPMAERVREGYARHWGVTEQEV 231
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244 | Back alignment and structure |
|---|
Score = 154 bits (393), Expect = 1e-42
Identities = 32/212 (15%), Positives = 69/212 (32%), Gaps = 12/212 (5%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
+ VT + G V+ L G VV + PG+
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGT------IALA 55
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGV---MYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
E +++V L ID +V+N + M +E + M + +
Sbjct: 56 EQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQ 115
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ + + + ++ I+S+ G +P A +Y + + + + +S I +
Sbjct: 116 SAIAPLRAAGG-ASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDGILLYA 174
Query: 894 IQAGDVKTELLSHSTDRDVVDKY--DISKAVP 923
I ++D + + + + VP
Sbjct: 175 IGPNFFNNPTYFPTSDWENNPELRERVDRDVP 206
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-42
Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 13/209 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +KV+ VTG+S GIG + + V G+KV+ ++ + D
Sbjct: 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIH-----------DPGEAKYDHIECD 54
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + VK + + E G I +LVNNAG+ + +E + EW +I+VN+ G +
Sbjct: 55 VTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASK 114
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+P M+ SR I+NISS + Y +K+ + G++ ++ + + ++
Sbjct: 115 FAIPYMIRSRD-PSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYA-PLLRCNA 172
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAV 922
+ + T L+ + + +V +
Sbjct: 173 VCPATIDTPLVRKAAELEVGSDPMRIEKK 201
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 2e-42
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 3/189 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA K VTG++ GIG+ + L GA V+ + + + D
Sbjct: 4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAA---AASIGKKARAIAAD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
++ VK + E+ A G IDILVNNA ++ F + L+ W +I+VN+ G
Sbjct: 61 ISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTR 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
M + + G +++I+SN +A Y K + G + AL E+ NI
Sbjct: 121 AGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGKYNITANA 180
Query: 894 IQAGDVKTE 902
+ G ++++
Sbjct: 181 VTPGLIESD 189
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-42
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 10/234 (4%)
Query: 699 SISNAGTVNIVFG---NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLE 754
S + GT N+ F A V VTG GIG + + L G + + +
Sbjct: 9 SGVDLGTENLYFQSMMTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVA 68
Query: 755 NLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFT--LMEKY 812
+ L +I + D+ + + V V+AE G ID LVNNAG+
Sbjct: 69 PVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDL 128
Query: 813 KLEEWNAMINVNIKGVLHCIGNILPSML--HSRRPGHILNISSNAGVRPFAGLAVYTGTK 870
K E ++ ++ VN++G + +L +ML +R I+NI+S + V Y +K
Sbjct: 129 KPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSK 188
Query: 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ S L +++ I V ++ G +++++ + + + D S VP+
Sbjct: 189 AGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGK--YDGLIESGLVPM 240
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 2e-42
Identities = 57/251 (22%), Positives = 106/251 (42%), Gaps = 28/251 (11%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV------------ARRIDRLENLKTSLQ 761
+ KV F+TG++ G G L GA ++A+ D L ++
Sbjct: 26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVE 85
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF-TLMEKYKLEEWNAM 820
II ++DV + ++ V + + +LG +DI++ NA + T + + + W M
Sbjct: 86 ALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDM 145
Query: 821 INVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGAL 880
I+VN+ G +P ++ +R G I+ SS G+R + Y +K+ + G+ +
Sbjct: 146 IDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTM 205
Query: 881 RQEVSDRNIKVTCIQAGDVKTEL-------------LSHSTDRDVVDKYDISKAVPV--L 925
E+ RNI+V + V T + L + T D +P+ +
Sbjct: 206 ALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPIPYV 265
Query: 926 TTKEISQSIIF 936
+IS +I+F
Sbjct: 266 EPADISNAILF 276
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 2e-42
Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 11/192 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KVI +T ++ GIG+ GAKV+A +L+ L+ I + LD
Sbjct: 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-----KYPGIQTRVLD 58
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + + + E+ +D+L N AG ++ + + ++W+ +N+N++ + I
Sbjct: 59 VTKKKQIDQFA----NEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIK 114
Query: 834 NILPSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LP ML +++ G+I+N+SS A V+ VY+ TK + G++ ++ + + I+
Sbjct: 115 AFLPKML-AQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCN 173
Query: 893 CIQAGDVKTELL 904
C+ G V T L
Sbjct: 174 CVCPGTVDTPSL 185
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 3e-42
Identities = 39/244 (15%), Positives = 80/244 (32%), Gaps = 26/244 (10%)
Query: 707 NIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS 766
+V + +K I V G S +G ++VK + +++ D EN P +
Sbjct: 13 GLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISI----DFREN--------PNA 60
Query: 767 IIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNI 825
+ + E ++K V+ ++ ++ +D V AG L+ MI++N+
Sbjct: 61 DHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNL 120
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
+ + G + ++A + +G+ Y TK I L E
Sbjct: 121 YSAFASAHIGAKLL---NQGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENG 177
Query: 886 D--RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943
I + T R + + P+ E+++ +
Sbjct: 178 GLPAGSTSLGILPVTLDTPTN-----RKYMSDANFDDWTPL---SEVAEKLFEWSTNSDS 229
Query: 944 SAVN 947
N
Sbjct: 230 RPTN 233
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 3e-42
Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 12/200 (6%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV--ARRIDRLENLKTSLQNAPGSIIV 769
+ L KV VTG+S GIG + K L GA V + R + E +Q+ GS
Sbjct: 3 SMLKGKVALVTGASRGIGRAIAKRLANDGALVA-IHYGNRKEEAEETVYEIQSNGGSAFS 61
Query: 770 KKLDVTIENDVKKVVREVLAEL------GHIDILVNNAGVMYFTLMEKYKLEEWNAMINV 823
++ + V+ + + EL DIL+NNAG+ +E+ + ++ M++V
Sbjct: 62 IGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSV 121
Query: 824 NIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQE 883
N K I L + R I+NISS A Y+ TK I ++ L ++
Sbjct: 122 NAKAPFFIIQQALSRL---RDNSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQ 178
Query: 884 VSDRNIKVTCIQAGDVKTEL 903
+ R I V I G VKT++
Sbjct: 179 LGARGITVNAILPGFVKTDM 198
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 3e-42
Identities = 53/190 (27%), Positives = 85/190 (44%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K VTGS+ G+G + L GA+V+ R L +L D
Sbjct: 7 LTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT E ++ ++ AE H+DIL+NNAG+ Y M + +LE W +I+ N+
Sbjct: 67 VTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSR 126
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ M+ G I+NI S +A YT K I+ ++ ++ E + NI+
Sbjct: 127 SAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNA 186
Query: 894 IQAGDVKTEL 903
I G + T++
Sbjct: 187 IGPGYILTDM 196
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 5e-42
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 1/190 (0%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+L KV VTG+S GIG ++ L + GA VV A E + S++ L
Sbjct: 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVL 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+++ ++ E+ AE IDILVNNAG+ LM + +EW ++IN N+ +
Sbjct: 62 NISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMS 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ M+ +R G I++I S G G Y K + G S +L EV+ RNI V
Sbjct: 122 KECVRGMM-KKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVN 180
Query: 893 CIQAGDVKTE 902
+ G + T+
Sbjct: 181 VVAPGFIATD 190
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 8e-42
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 17/218 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV----------------ARRIDRLENLK 757
+ KV FVTG++ G G L GA ++AV A + L
Sbjct: 9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETA 68
Query: 758 TSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF-TLMEKYKLEE 816
++ I+ ++DV + +K V + +LG +DI+V NAG+ ++K E+
Sbjct: 69 DLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEED 128
Query: 817 WNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876
W MI++N+ GV + +P M+ R G I+ SS G++ + Y K+ + G+
Sbjct: 129 WTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGL 188
Query: 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVD 914
A E+ I+V + VKT +L + +
Sbjct: 189 MRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFR 226
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 8e-42
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 7/189 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L+ K I VTG++SGIG + GA +VAV R L + I D
Sbjct: 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA---VAALEAEAIAVVAD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ V+ V E L E G + + + AGV + L LE W ++ VN+ G
Sbjct: 61 VSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVAR 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ G ++ S AG+ GLA Y K + G++ L E++ + ++V
Sbjct: 121 KAGEVL---EEGGSLVLTGSVAGL-GAFGLAHYAAGKLGVVGLARTLALELARKGVRVNV 176
Query: 894 IQAGDVKTE 902
+ G ++T
Sbjct: 177 LLPGLIQTP 185
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-41
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 6/214 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA ++ VTG S GIG+ + + L+ GA+V AR + + T L +A G D
Sbjct: 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRL-SAYGDCQAIPAD 85
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
++ E +++ + + +DILVNNAG + +E Y + W ++ +N+ V CI
Sbjct: 86 LSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQ 145
Query: 834 NILPSMLHS---RRPGHILNISSNAGVRPFAGLAV-YTGTKYFIEGISGALRQEVSDRNI 889
+LP + S P ++NI S AG+ A Y +K + +S L +E+ +I
Sbjct: 146 QLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHI 205
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
V I G + + H + + S ++P
Sbjct: 206 NVNVIAPGRFPSRMTRHIANDPQALEA-DSASIP 238
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 1e-41
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 7/204 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG +SG+G ++VK L+ GAKV + L L + + D
Sbjct: 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---GERSMFVRHD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ E D V+ V LG +++LVNNAG++ ME +LE+++ ++ +N + V
Sbjct: 61 VSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQ 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN--IKV 891
+ +M G I+N++S + P A Y+ +K + ++ A + I+V
Sbjct: 121 QGIAAMK--ETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRV 178
Query: 892 TCIQAGDVKTELLSHSTDRDVVDK 915
I + T ++ S + V +
Sbjct: 179 NSIHPDGIYTPMMQASLPKGVSKE 202
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 1e-41
Identities = 39/187 (20%), Positives = 73/187 (39%), Gaps = 8/187 (4%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
VT G L G V + + L+ + P +L
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYP------QLKPMS 55
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
E + +++ V + G +D+LV+N F ++KY +E++ + + +
Sbjct: 56 EQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAV 115
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
M R+ GHI+ I+S P+ L+ YT + ++ AL +E+ + NI V I
Sbjct: 116 ASQMK-KRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIG 174
Query: 896 AGDVKTE 902
+ +E
Sbjct: 175 PNYLHSE 181
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 3e-41
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 7/192 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL- 772
L K VTGS++GIG+ + LV GA V+ RR + + ++ I++ +
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVV 67
Query: 773 -DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D+ E + V+ + +DIL+NN G+ E+W + VNI +
Sbjct: 68 ADLGTEQGCQDVI----EKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRL 123
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ L M+ R+ G ++ I+S A + P +A Y+ TK +S +L + + N+ V
Sbjct: 124 TRSYLKKMI-ERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVTV 182
Query: 892 TCIQAGDVKTEL 903
I G TE
Sbjct: 183 NTIMPGSTLTEG 194
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 5e-41
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 3/192 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
T ++V VTG++SGIG ++ + L G +V AR + L L+ A +
Sbjct: 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTC 78
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV +++ +V V+ G +D+LVNNAG + E W ++ N+ GV
Sbjct: 79 DVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVT 138
Query: 833 GNILPS--MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+L + ML G I+NI+S G + A Y+ +K+ + G + AL E++ I
Sbjct: 139 KQVLKAGGMLERGT-GRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGIT 197
Query: 891 VTCIQAGDVKTE 902
V + G V+T
Sbjct: 198 VNAVCPGFVETP 209
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 5e-41
Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 8/206 (3%)
Query: 706 VNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG 765
+ F + NK I VTG + GIG + + GA V + R + + G
Sbjct: 4 MAPGFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG 63
Query: 766 -SIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVN 824
+ DV+ + V K ++++ A+LG I L+ NAGV + E++ + +VN
Sbjct: 64 VKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVN 123
Query: 825 IKGVLHCIGNILPSMLHSRRPGHILNISSNAG-------VRPFAGLAVYTGTKYFIEGIS 877
+ GV + + L ++ G I+ SS + + Y +K +
Sbjct: 124 VFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLV 183
Query: 878 GALRQEVSDRNIKVTCIQAGDVKTEL 903
L E + I+V + G V T+
Sbjct: 184 KGLAAEWASAGIRVNALSPGYVNTDQ 209
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 8e-41
Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 21/211 (9%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPG-SIIVK 770
+TG + IG + L G +VV + L L A S ++
Sbjct: 8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLC 67
Query: 771 KLDVTIENDV----KKVVREVLAELGHIDILVNNAGVMYFTLM-----------EKYKLE 815
K D+++ + + + ++ G D+LVNNA Y T + K
Sbjct: 68 KGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDA 127
Query: 816 EWNAMINVNIKGVLHCIGNILPSM----LHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871
+ + N L I R ++N+ P G VYT K+
Sbjct: 128 QVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKH 187
Query: 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTE 902
+ G++ A E++ R+I+V + G
Sbjct: 188 ALGGLTRAAALELAPRHIRVNAVAPGLSLLP 218
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-40
Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 6/212 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKL 772
L + + VTG + GIG + GA V R ++ L G +I +
Sbjct: 8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQT 67
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ + + E G ID++ NAGV + E+ N + VN+ G + +
Sbjct: 68 DVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAV 127
Query: 833 GNILPSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
L +++ S G ++ SS G + + G + Y TK G E++ I V
Sbjct: 128 QACLDALIASGS-GRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAPHKITV 186
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I G++ TE L + + + + +++++P
Sbjct: 187 NAIMPGNIMTEGLLENGE-EYIAS--MARSIP 215
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-40
Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 30/249 (12%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV------------ARRIDRLENLKTSLQ 761
L KV F+TG++ G G L GA ++AV + L ++
Sbjct: 11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVE 70
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
+ I+ ++ DV + ++ L ELG +DI+V NAG+ M + W+ +I
Sbjct: 71 DIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGI---APMS-AGDDGWHDVI 126
Query: 822 NVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF----AGLAVYTGTKYFIEGIS 877
+VN+ GV H I +P+++ G I+ ISS+AG+ G Y K+ + G+
Sbjct: 127 DVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLM 186
Query: 878 GALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKA----------VPVLTT 927
++ + I+V I V+T ++++ R+ + K + V VL
Sbjct: 187 RVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMPVEVLAP 246
Query: 928 KEISQSIIF 936
++++ ++ +
Sbjct: 247 EDVANAVAW 255
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 2e-40
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 6/192 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L VTG+ SGIG ++ + GA+++ + R L+ L A + IV D
Sbjct: 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIV--AD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + E + + ILVN+AG+ + W ++ VN+ G+
Sbjct: 67 VTDAEAMTAAAAEA-EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASR 125
Query: 834 NILPSMLHSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+M+ +R G I+N+ S +G V + Y +K + ++ AL E + R ++V
Sbjct: 126 AFGRAMV-ARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGVRV 184
Query: 892 TCIQAGDVKTEL 903
+ G V TE+
Sbjct: 185 NALAPGYVATEM 196
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 3e-40
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 12/205 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV------------ARRIDRLENLKTSLQ 761
L KV F+TG++ G G L GA +VA+ + L+ ++
Sbjct: 44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVE 103
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
II ++ DV ++ VV E LAE GHIDILV+N G+ + ++W+ ++
Sbjct: 104 EQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDIL 163
Query: 822 NVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALR 881
N+ G H +LPSM+ + G ++ +SS G+R G + Y +K+ ++G+ +L
Sbjct: 164 QTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLA 223
Query: 882 QEVSDRNIKVTCIQAGDVKTELLSH 906
EV NI+V + G V TE+ +
Sbjct: 224 NEVGRHNIRVNSVNPGAVNTEMALN 248
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 3e-40
Identities = 54/189 (28%), Positives = 100/189 (52%), Gaps = 1/189 (0%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
NKV VTG+ GIG ++ K L + V+ ++R +++ +++ D
Sbjct: 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGD 101
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ + ++ +V+ ++L E ++DILVNNAG+ L + K +EW ++ N+ + +
Sbjct: 102 VSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQ 161
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
I M+ + R G I+NISS G+ G A Y+ +K + G + +L +E++ RNI V
Sbjct: 162 PISKRMI-NNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNITVNA 220
Query: 894 IQAGDVKTE 902
I G + ++
Sbjct: 221 IAPGFISSD 229
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 3e-40
Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 4/189 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L + VTG++ GIGE + + GA V R D+L+ + L + V +
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG---KDVFVFSAN 81
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
++ +K++ E+ IDILVNNAG+ L + + ++W+ ++ VN+
Sbjct: 82 LSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTR 141
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
++ SM+ RR G I+NI+S GV G Y K + G S AL QE++ RNI V C
Sbjct: 142 ELIHSMM-RRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNC 200
Query: 894 IQAGDVKTE 902
I G +K+
Sbjct: 201 IAPGFIKSA 209
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 5e-40
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 2/191 (1%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKK 771
L KV VTGS+ GIG + + L + G+ V+ +R + + + N G +
Sbjct: 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVE 63
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+++ E + K E+ + IDILVNNAG+ L + L +W ++ VN+ G
Sbjct: 64 MNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLV 123
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
N L M+ +R G I+NISS G G Y+ TK + G + +L +E++ RN+ V
Sbjct: 124 TQNSLRKMI-KQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLV 182
Query: 892 TCIQAGDVKTE 902
+ G ++T+
Sbjct: 183 NAVAPGFIETD 193
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 6e-40
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 13/203 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI------------DRLENLKTSLQ 761
K +TG + G+G L GA + R D L ++
Sbjct: 8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVE 67
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
I K+DV ++ V E LG IDI + NAG+ L+ + + +W+ +I
Sbjct: 68 KTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVI 127
Query: 822 NVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALR 881
N+ G + I + P M+ R G I+ +SS G A Y +K+ + G++
Sbjct: 128 GTNLTGTFNTIAAVAPGMI-KRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAA 186
Query: 882 QEVSDRNIKVTCIQAGDVKTELL 904
++ I V + G+++T +
Sbjct: 187 HDLVGYGITVNAVAPGNIETPMT 209
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 8e-40
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 1/191 (0%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
TL +V VTG+S GIG + +L GA V+ A E + + + A
Sbjct: 24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAV 83
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
L+V V +V L E G +++LVNNAG+ L + K +EW+A+I+ N+K V
Sbjct: 84 LNVNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRL 143
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+L M+ R G I+NI+S G G Y K + G++ AL +E+ R I V
Sbjct: 144 SRAVLRPMM-KARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGSRGITV 202
Query: 892 TCIQAGDVKTE 902
C+ G + T+
Sbjct: 203 NCVAPGFIDTD 213
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 8e-40
Identities = 37/191 (19%), Positives = 82/191 (42%), Gaps = 4/191 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ--NAPGSIIVKK 771
+ K+ VT SSG+G +L GA+++ +R ++LE + + + + +
Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D+ D+ ++ + +LG DILV + G + +E+W+ + + +
Sbjct: 65 GDIREPGDIDRLFEKA-RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWV 123
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
M+ + G ++ I S +RP+ LA+ + + G+ L E++ + V
Sbjct: 124 GRRAAEQMV-EKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTV 182
Query: 892 TCIQAGDVKTE 902
+ + T+
Sbjct: 183 NAVLPSLILTD 193
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 1e-39
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 10/218 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ +V VTG+S GIG + L GA V R +D L + Q+ G + D
Sbjct: 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCD 62
Query: 774 VTIENDVKKVVREVLAE-LGHIDILVNNAGVM-------YFTLMEKYKLEEWNAMINVNI 825
+ E++V+ + +V E G +D+LVNNA + W+ + NV +
Sbjct: 63 SSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGL 122
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
+G C M+ + + G I+ ISS ++ Y K + ++ E+
Sbjct: 123 RGHYFCSVYGARLMVPAGQ-GLIVVISSPGSLQY-MFNVPYGVGKAACDKLAADCAHELR 180
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+ + G V+TELL ++ V + + K
Sbjct: 181 RHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFK 218
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 1e-39
Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 6/212 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKL 772
L+ + + VTG + GIG + GA V AR L ++ L G++I +L
Sbjct: 39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRL 98
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ R V+ G +D++ NAG+ ++ E+ + +++VN+KG ++ +
Sbjct: 99 DVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTV 158
Query: 833 GNILPSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
L + + G ++ SS G V + G + Y +K G E++ R + V
Sbjct: 159 QACLAPLT-ASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTV 217
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I G++ TE L + + + +++++P
Sbjct: 218 NAILPGNILTEGLVDMGE-EYISG--MARSIP 246
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 2e-39
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 3/192 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKL 772
L +V VTG S G+G + + L G VV +R ++ L G + +
Sbjct: 19 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 78
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ +VKK++ V + G +D +VN AG+ E++ L+E+ +I VN+ G +
Sbjct: 79 DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVC 138
Query: 833 GNILPSMLHSRRPGHILNISS-NAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ I+NI S ++ Y +K + ++ AL +E I+V
Sbjct: 139 REAFSLLR-ESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRV 197
Query: 892 TCIQAGDVKTEL 903
I G +T++
Sbjct: 198 NVIAPGWYRTKM 209
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 3e-39
Identities = 31/197 (15%), Positives = 73/197 (37%), Gaps = 22/197 (11%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-------AVARRIDRLENLKTSLQNAPG 765
TL++ I +TG+S +G L+ G +V+ A + G
Sbjct: 24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTEL-----------RQAG 72
Query: 766 SIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNI 825
++ + D + E + + + + + +V+NA + + + + M +V++
Sbjct: 73 AVALY-GDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGE-EADNFTRMFSVHM 130
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
+ P + S I++IS + + + Y TK +E ++ + +
Sbjct: 131 LAPYLINLHCEPLLTASEV-ADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFA 189
Query: 886 DRNIKVTCIQAGDVKTE 902
+KV I + +
Sbjct: 190 PL-VKVNGIAPALLMFQ 205
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 4e-39
Identities = 36/205 (17%), Positives = 74/205 (36%), Gaps = 21/205 (10%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNA-PGSII 768
G+ + VTG++ IG + L G +VV + +L L + +
Sbjct: 18 GSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAV 77
Query: 769 VKKLDVT----IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLE--------- 815
V + D+T + ++++ G D+LVNNA Y T + + E
Sbjct: 78 VCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVE 137
Query: 816 -EWNAMINVNIKGVLHCIGNILPSMLHSR-----RPGHILNISSNAGVRPFAGLAVYTGT 869
+ +I N + + I+N+ +P ++Y
Sbjct: 138 TQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMG 197
Query: 870 KYFIEGISGALRQEVSDRNIKVTCI 894
K+ + G++ + E++ I+V +
Sbjct: 198 KHALVGLTQSAALELAPYGIRVNGV 222
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 4e-39
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 3/190 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA + VTG+ SGIG + GA V+A R D ++ + + + GS D
Sbjct: 29 LAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGGGSAEAVVAD 87
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ V E+ A +D+LVNNAG++ E+ L W ++ VN+
Sbjct: 88 LADLEGAANVAEEL-AATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSR 146
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ +ML + G I+ I+S + +A Y +K+ + G++ AL E + R + V
Sbjct: 147 SFGTAML-AHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNA 205
Query: 894 IQAGDVKTEL 903
+ G V T
Sbjct: 206 LAPGYVVTAN 215
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 4e-39
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 6/195 (3%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKK 771
+ +T + G+G+Q+ + L+ G V +E +K + ++ + +
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQ 63
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYF--TLMEKYKLEEWNAMINVNIKGVL 829
DVT + D+ K+V E ++ G ID L+NNAG F + Y+ +EWN MI N+ V
Sbjct: 64 ADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVF 123
Query: 830 HCIGNILPSMLHSRRPGHILNIS--SNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
H + ++P M + G I+N + + + K + ++ + E ++
Sbjct: 124 HLLKLVVPVMR-KQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEEAEY 182
Query: 888 NIKVTCIQAGDVKTE 902
I + GD+ E
Sbjct: 183 GITANMVCPGDIIGE 197
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 5e-39
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 8/217 (3%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIV 769
G+ A +V FVTG G+G + + L G V + R D + ++A
Sbjct: 20 GSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKA 79
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
+DV ++ +VLA+ G +D+L+NNAG+ K +W+A++ ++ +
Sbjct: 80 YAVDVADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMF 139
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ + M+ RR G I+NI S G R G A Y K I G + L E + R I
Sbjct: 140 NVTKQFIAGMV-ERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAKRGI 198
Query: 890 KVTCIQAGDVKTELLSHSTD--RDVVDKYDISKAVPV 924
V + G + T + + V + I +PV
Sbjct: 199 TVNTVSPGYLATAM----VEAVPQDVLEAKILPQIPV 231
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 1e-38
Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 2/190 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKKL 772
K VTG+S GIG + L G V V A ++ E + ++ +
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQA 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+V ++VK +++EV+++ G +D+LVNNAG+ L+ + K +EW+ +I+ N+KGV +CI
Sbjct: 62 NVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCI 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P ML +R G I+N+SS G G A Y TK + G++ + +E++ R I V
Sbjct: 122 QKATPQML-RQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVN 180
Query: 893 CIQAGDVKTE 902
+ G + ++
Sbjct: 181 AVAPGFIVSD 190
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-38
Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 8/199 (4%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-------P 764
N L + + VTG+ SGIG + L GA V A + L
Sbjct: 3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPR 62
Query: 765 GSIIVKKLDVTIENDVKKVVREVLAELGHI-DILVNNAGVMYFTLMEKYKLEEWNAMINV 823
G+ + DV+ + ++ +V A ++V+ AG+ + ++W+ +I V
Sbjct: 63 GNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAV 122
Query: 824 NIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQE 883
N+KG +++ + G I+NISS G G Y +K + G++ +E
Sbjct: 123 NLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARE 182
Query: 884 VSDRNIKVTCIQAGDVKTE 902
+ I+ + G + T
Sbjct: 183 LGRHGIRCNSVLPGFIATP 201
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246 | Back alignment and structure |
|---|
Score = 142 bits (362), Expect = 2e-38
Identities = 67/190 (35%), Positives = 97/190 (51%), Gaps = 2/190 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-AVARRIDRLENLKTSLQNAPGSIIVKKL 772
L KV VTG+S GIG + DL GA VV A + + ++ I +
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRA 61
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV DV +V++ + G +DILVNNAGV L+ + K EEW+ +IN N+KGV C
Sbjct: 62 DVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCT 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ M+ +R G I+NI+S GV G A Y K + G++ +E++ RNI V
Sbjct: 122 KAVSRFMM-RQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNITVN 180
Query: 893 CIQAGDVKTE 902
I G + T+
Sbjct: 181 AIAPGFIATD 190
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-38
Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 4/189 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG+S GIG+ + + L GAKV+ A + + L + L+
Sbjct: 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG---DNGKGMALN 63
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT ++ V++ + E G +DILVNNAG+ L+ + K EEW+ ++ N+ +
Sbjct: 64 VTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSK 123
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+L M+ +R G I+N+ S G AG A Y K + G + ++ +EV+ R + V
Sbjct: 124 AVLRGMM-KKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNT 182
Query: 894 IQAGDVKTE 902
+ G ++T+
Sbjct: 183 VAPGFIETD 191
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-38
Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 2/190 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKL 772
L K VTGSS G+G+ + L +GA +V + L+ + A +++V K
Sbjct: 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKG 62
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV DV+ +V+ + G IDILVNNAG+ TLM K ++W+ ++N N+K C
Sbjct: 63 DVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCT 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ ML ++ G I+NI+S AG+ AG A Y +K + G + ++ +E + + I
Sbjct: 123 KAVSKIML-KQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCN 181
Query: 893 CIQAGDVKTE 902
+ G +KT+
Sbjct: 182 AVAPGIIKTD 191
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 3e-38
Identities = 43/214 (20%), Positives = 84/214 (39%), Gaps = 28/214 (13%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV------------ARRIDRLENLKTSLQ 761
+ +KV+ VTG + G G L GA ++ LE ++
Sbjct: 8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE 67
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
++DV V + + +AE G +D++V NAG+ L ++ +
Sbjct: 68 KTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGIC--PLGAHLPVQAFADAF 125
Query: 822 NVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-----------PFAGLAVYTGTK 870
+V+ GV++ + LP + I+ S AG+ G A Y+ K
Sbjct: 126 DVDFVGVINTVHAALPYLTSG---ASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAK 182
Query: 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELL 904
++ + L +++ ++I+ I +V T++L
Sbjct: 183 QLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDML 216
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 4e-38
Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 6/194 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTGSS GIG + + GA V E + + K +
Sbjct: 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCN 91
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGV--MYFTLMEKYKLEEWNAMINVNIKGVLHC 831
++ V++ + + + G ID+ V NAGV ++ + WN +I+V++ GV +C
Sbjct: 92 ISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYC 151
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGL--AVYTGTKYFIEGISGALRQEVSDRNI 889
NI G ++ SS +G A Y K ++ +L E +
Sbjct: 152 SHNIGKIFK-KNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAPF-A 209
Query: 890 KVTCIQAGDVKTEL 903
+V I G + T++
Sbjct: 210 RVNTISPGYIDTDI 223
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 5e-38
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 12/190 (6%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+ VTG S GIG + + LV G +V +R + + G++ + D+
Sbjct: 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQ-------SLGAVPLP-TDLE 53
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+ D K +V+ L LG + +LV+ A V + EEW ++ +++
Sbjct: 54 KD-DPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAA 112
Query: 836 LPSMLHSRRPGHILNISSNAG--VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
P M G +L I S + YT K + G++ AL +E + I+V
Sbjct: 113 APHMA-EAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNL 171
Query: 894 IQAGDVKTEL 903
+ G V+TE
Sbjct: 172 LCPGYVETEF 181
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 5e-38
Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 5/213 (2%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVA-VARRIDRLENLKTSLQNAPGSIIVKK 771
++ ++ +VTG GIG + + L G +VVA R + +
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASE 69
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+V + K+ +V AE+G ID+LVNNAG+ + K E+W A+I+ N+ + +
Sbjct: 70 GNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNV 129
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
++ M+ R G I+NISS G + G Y+ K I G + +L QEV+ + + V
Sbjct: 130 TKQVIDGMV-ERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTV 188
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ G + T+++ DV++K I +PV
Sbjct: 189 NTVSPGYIGTDMVKAIRP-DVLEK--IVATIPV 218
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 6e-38
Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 2/190 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKKL 772
L +++ VTG+S GIG + +L GAKV V A + + ++ A G K
Sbjct: 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKA 85
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ E++V+ + V+ G +D+LVNNAG+ TL+ + K ++W +++++N+ GV C
Sbjct: 86 DVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCS 145
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
ML +R G I+NI+S G G A Y+ K + G++ + +E++ R I V
Sbjct: 146 RAAAKIML-KQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVN 204
Query: 893 CIQAGDVKTE 902
+ G + T+
Sbjct: 205 AVAPGFIATD 214
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 1e-37
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ +K + V +S GIG + L GA+V AR + L+
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVC---------- 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
D++K + + ++ +DILV NAG ++ E++ I+ ++ +
Sbjct: 67 -----DLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVR 121
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
N LP+M + G I+ I+S + + P L + + G L EV+ I V C
Sbjct: 122 NYLPAMK-EKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNC 180
Query: 894 IQAGDVKTE 902
+ G +TE
Sbjct: 181 VAPGWTETE 189
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249 | Back alignment and structure |
|---|
Score = 139 bits (354), Expect = 2e-37
Identities = 52/189 (27%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TG+SSGIG + + L LG+KV+ ++L++L +L + ++ +
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL---KDNYTIEVCN 68
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ + + ++ ++ ++DILV NAG+ TL + K ++++ +I++N+K
Sbjct: 69 LANKEECSNLI----SKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNR 124
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ M+ +R G I+NISS G+ G A Y +K + G++ +L EV+ R I V
Sbjct: 125 EAIKKMI-QKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNA 183
Query: 894 IQAGDVKTE 902
+ G +K++
Sbjct: 184 VAPGFIKSD 192
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-37
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 2/187 (1%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKV-VAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
V+ VTG+S GIG+ + L G KV V AR E + ++ G I DV+
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVS 61
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
E DV+ +++ + G ID++VNNAG+ TL+ + K +W+ +I++N+ GV C
Sbjct: 62 KEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAA 121
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
M+ +R G I+NI+S G+ G A Y K + G S +E + RNI V +
Sbjct: 122 TKIMM-KKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVC 180
Query: 896 AGDVKTE 902
G + ++
Sbjct: 181 PGFIASD 187
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 1e-36
Identities = 38/221 (17%), Positives = 71/221 (32%), Gaps = 38/221 (17%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-----------AVARRIDRLENLK--- 757
V VTG++ +G + + L G V A++ ++
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 64
Query: 758 -----TSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKY 812
+++ AP S VT+ ++V G D+LVNNA Y T + +
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 124
Query: 813 KLEEWNAM--------------INVNIKGVLHCIGNILPSMLHS-----RRPGHILNISS 853
+ N I + + I+N+
Sbjct: 125 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 184
Query: 854 NAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
+P G +YT K +EG++ + E++ I+V +
Sbjct: 185 AMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGV 225
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
++ + VTG + GIG + + L G KV R AP + ++
Sbjct: 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRG-----------SGAPKGLFGVEV 60
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DVT + V + V G +++LV+NAG+ + + E++ +IN N+ G
Sbjct: 61 DVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVA 120
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
SM + G ++ I S +G+ A Y +K + G++ ++ +E+S N+
Sbjct: 121 QRASRSMQ-RNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKANVTAN 179
Query: 893 CIQAGDVKTE 902
+ G + T+
Sbjct: 180 VVAPGYIDTD 189
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 2e-36
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 3/188 (1%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVV-AVARRIDRLENLKTSLQNAPGS-IIVKKLDV 774
+ +TG+S GIG + L G + + ++ E + + + V ++
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANL 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
+V + LG +D LVNNAG+ TL+ + K E+W A++ N+ V
Sbjct: 62 LEAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTRE 121
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
+ M+ R G I+NI+S G+ G A Y +K + G + A+ +E + R I V +
Sbjct: 122 AVKLMM-KARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAV 180
Query: 895 QAGDVKTE 902
G ++TE
Sbjct: 181 APGFIETE 188
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 3e-36
Identities = 38/221 (17%), Positives = 71/221 (32%), Gaps = 38/221 (17%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-----------AVARRIDRLENLK--- 757
V VTG++ +G + + L G V A++ ++
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 101
Query: 758 -----TSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKY 812
+++ AP S VT+ ++V G D+LVNNA Y T + +
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 161
Query: 813 KLEEWNAM--------------INVNIKGVLHCIGNILPSMLHS-----RRPGHILNISS 853
+ N I + + I+N+
Sbjct: 162 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 221
Query: 854 NAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
+P G +YT K +EG++ + E++ I+V +
Sbjct: 222 AMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGV 262
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 3e-36
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 7/189 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +K + +TG++ GIG ++ GA++VA L ++ +D
Sbjct: 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG-----AHPVVMD 57
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V V++ E LA LG +D +V+ AG+ K LE+W ++ VN+ G
Sbjct: 58 VADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAK 117
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+M + PG I+ +S + G A Y + + G++ L E+ I+V
Sbjct: 118 AASEAMR-EKNPGSIVLTASRVYL-GNLGQANYAASMAGVVGLTRTLALELGRWGIRVNT 175
Query: 894 IQAGDVKTE 902
+ G ++T
Sbjct: 176 LAPGFIETR 184
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 4e-36
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 8/196 (4%)
Query: 714 LANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPG-SIIV 769
L KV+ VTG+S G+G + + +GA V A R E L+ G
Sbjct: 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKA 77
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
K V +K+V++V+A+ G ID + NAG + + +E WN ++ V++ G
Sbjct: 78 YKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTF 137
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVR--PFAGLAVYTGTKYFIEGISGALRQEVSDR 887
HC + R G ++ +S +G Y K ++ +L E D
Sbjct: 138 HCAKAVGHHFK-ERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDF 196
Query: 888 NIKVTCIQAGDVKTEL 903
+V I G + T L
Sbjct: 197 -ARVNSISPGYIDTGL 211
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 7e-36
Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 12/190 (6%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+ ++ + VTG + GIG + + G KV R P + K
Sbjct: 18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRS-----------GEPPEGFLAVKC 66
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D+T V++ +E+ G +++L+ NAGV L+ + E++ +++ N+ G +
Sbjct: 67 DITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVV 126
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ML + G ++ ISS G+ AG A Y +K + G + +L +E+ RNI
Sbjct: 127 KRANRAML-RAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGSRNITFN 185
Query: 893 CIQAGDVKTE 902
+ G V T+
Sbjct: 186 VVAPGFVDTD 195
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 8e-35
Identities = 36/243 (14%), Positives = 77/243 (31%), Gaps = 25/243 (10%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVK-KL 772
+ + V G +G + V+ V ++ D +EN + A S+IVK
Sbjct: 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASI----DVVEN-----EEASASVIVKMTD 55
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHC 831
T + D L +D ++ AG K + + M +I
Sbjct: 56 SFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTIS 115
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD--RNI 889
+ + G + + A + G+ Y K + + +L + S
Sbjct: 116 SHLATKHL---KEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGA 172
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949
+ + T + R + + D S P+ + + ++ + + +
Sbjct: 173 AAIAVLPVTLDTPMN-----RKSMPEADFSSWTPL---EFLVETFHD-WITGNKRPNSGS 223
Query: 950 LIE 952
LI+
Sbjct: 224 LIQ 226
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-34
Identities = 36/243 (14%), Positives = 83/243 (34%), Gaps = 26/243 (10%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+++ + V G +G +++ G V+ + D N A +I+V +
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNI----DLSAN-----DQADSNILVD-GN 50
Query: 774 VTIENDVKKVVREVLAEL--GHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLH 830
+ ++ + + L +D + AG + K ++ + MI ++
Sbjct: 51 KNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAI 110
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD--RN 888
+ + G + + A + P + Y K + ++ +L + S N
Sbjct: 111 AAKLATTHL---KPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDN 167
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948
V I + T + R + D S P+ IS+ ++ + S +
Sbjct: 168 SAVLTIMPVTLDTPMN-----RKWMPNADHSSWTPL---SFISEHLLKWTTETSSRPSSG 219
Query: 949 ILI 951
L+
Sbjct: 220 ALL 222
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 5e-33
Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 26/203 (12%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV------------AVARRIDRLENLKTSLQ 761
L ++ VTG SGIG GA V V I +
Sbjct: 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALI----------E 96
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAM 820
++ D++ E+ + +V + LG +DIL AG ++ E++
Sbjct: 97 ECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQT 156
Query: 821 INVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGAL 880
VN+ + +P + + I+ SS +P L Y TK I S L
Sbjct: 157 FAVNVFALFWITQEAIPLL---PKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGL 213
Query: 881 RQEVSDRNIKVTCIQAGDVKTEL 903
++V+++ I+V + G + T L
Sbjct: 214 AKQVAEKGIRVNIVAPGPIWTAL 236
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 4e-32
Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 15/219 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L ++V VTG+SSG+G + + L GA V+ + + E L ++ + D
Sbjct: 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL---GAAVRFRNAD 61
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLM----EKYKLEEWNAMINVNIKGVL 829
VT E D + E GH+ LVN AG + + L+ + + VN+ G
Sbjct: 62 VTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTF 121
Query: 830 HCIGNILPSMLHSRRP-----GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV 884
+ I M G I+N +S A G A Y +K + ++ +E+
Sbjct: 122 NMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAAREL 181
Query: 885 SDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+ I+V I G T +++ DV D ++ +VP
Sbjct: 182 ARFGIRVVTIAPGIFDTPMMAGMPQ-DVQDA--LAASVP 217
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 5e-32
Identities = 27/187 (14%), Positives = 66/187 (35%), Gaps = 26/187 (13%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
I + G+S +G + + L A+V+ R + +D+T
Sbjct: 4 MKILLIGASGTLGSAVKERLEK-KAEVITAGRHSGDV-----------------TVDITN 45
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+ +KK+ ++G +D +V+ G F+ + + E+ I+ + G ++ + +
Sbjct: 46 IDSIKKMY----EQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGI 101
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
S+ G + P A + + + E+ R I++ +
Sbjct: 102 DSL---NDKGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMP-RGIRINTVSP 157
Query: 897 GDVKTEL 903
++
Sbjct: 158 NVLEESW 164
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 6e-32
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV VTG++ GIG + + GA VVA+ E+LK G+ + LD
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVD-GAAEDLKRVADKVGGTALT--LD 267
Query: 774 VTIENDVKKVVREVLAELG-HIDILVNNAGVMYFT---LMEKYKLEEWNAMINVNIKGVL 829
VT ++ V K+ V G +DILVNNAG+ T L+ + W+A+I VN+
Sbjct: 268 VTADDAVDKITAHVTEHHGGKVDILVNNAGI---TRDKLLANMDEKRWDAVIAVNLLAPQ 324
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
++ + G ++ +SS AG+ G Y TK + G++ AL ++D+ I
Sbjct: 325 RLTEGLVGNGT-IGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLADKGI 383
Query: 890 KVTCI 894
+ +
Sbjct: 384 TINAV 388
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 9e-32
Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 16/220 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
V+G + G+GE V+ L G VV ++ + L L +
Sbjct: 28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL---GNRAEFVSTN 84
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLM-----EKYKLEEWNAMINVNIKGV 828
VT E+ V + +V + G + + + I++ + G
Sbjct: 85 VTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGT 144
Query: 829 LHCIGNILPSMLHSRRP-----GHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQE 883
+ + S+ + G ++ +S AG G Y K + G++ A ++
Sbjct: 145 YNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAARD 204
Query: 884 VSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+S I+V I G +KT ++ + + + K + +P
Sbjct: 205 LSSAGIRVNTIAPGTMKTPIMESVGE-EALAK--FAANIP 241
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 9e-32
Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 17/221 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ V +TG +SG+G + LV GA V + E L + + D
Sbjct: 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL---GNNCVFAPAD 66
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYK------LEEWNAMINVNIKG 827
VT E DV+ + + G +D+ VN AG+ + K LE++ +++VN+ G
Sbjct: 67 VTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMG 126
Query: 828 VLHCIGNILPSM-----LHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQ 882
+ I + M + G I+N +S A G A Y+ +K I G++ + +
Sbjct: 127 TFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIAR 186
Query: 883 EVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+++ I+V I G T LL+ + V + ++ VP
Sbjct: 187 DLAPIGIRVMTIAPGLFGTPLLTSLPE-KVCNF--LASQVP 224
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 6/212 (2%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI--IVKKLDV 774
VI +TGS+SGIG L + L G V+ + R +E ++ ++ ++ +
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGG 61
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFT--LMEKYKLEEWNAMINVNIKGVLHCI 832
++ V V A + + VN GV L E + A + V
Sbjct: 62 VLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPG 121
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
LP + + G A + LA Y G+KY + ++ + + R +++
Sbjct: 122 AAELPMVE-AMLAGDEARAIELAEQQGQTHLA-YAGSKYAVTCLARRNVVDWAGRGVRLN 179
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
+ G V+T LL S + P+
Sbjct: 180 VVAPGAVETPLLQASKADPRYGESTRRFVAPL 211
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 7e-30
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 17/211 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-------ARRIDRLENLKTSLQNAPGS 766
L K + +TG SGIG + GA + A + ++
Sbjct: 45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQY------VEKEGVK 98
Query: 767 IIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNI 825
++ D++ E K +V+E + +LG ++ILVNN +E E+ +NI
Sbjct: 99 CVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINI 158
Query: 826 KGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
H L + ++ I+N +S L Y+ TK I + +L Q +
Sbjct: 159 FSYFHVTKAALSHL---KQGDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLV 215
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDKY 916
+ I+V + G + T L+ S D V ++
Sbjct: 216 QKGIRVNGVAPGPIWTPLIPSSFDEKKVSQF 246
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 4e-29
Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 25/217 (11%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+ VTG +SG+G L G +VV +D L+ +I + DVT
Sbjct: 2 ERSALVTGGASGLGRAAALALKARGYRVVV----LD--------LRREGEDLIYVEGDVT 49
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLM----EKYKLEEWNAMINVNIKGVLHC 831
E DV++ V E + +V+ AGV + + LE + ++ VN+ G +
Sbjct: 50 REEDVRRAVARA-QEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNV 108
Query: 832 IGNILPSMLHSR-----RPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
+ +M + + G I+N +S A G A Y +K + ++ +E++
Sbjct: 109 LRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAG 168
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I+V + G T LL + ++ VP
Sbjct: 169 WGIRVVTVAPGLFDTPLLQGLPE-KAKAS--LAAQVP 202
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 3e-28
Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 21/221 (9%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ + V VTG +SG+G K L+ GA+VV +D + + + D
Sbjct: 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVV----LDI--RGEDVVADLGDRARFAAAD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLM----EKYKLEEWNAMINVNIKGVL 829
VT E V + ++ +G + I+VN AG + + L + ++++N+ G
Sbjct: 61 VTDEAAVASAL-DLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSF 119
Query: 830 HCIGNILPSML-------HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQ 882
+ + + ++ G I+N +S A G A Y+ +K + G++ + +
Sbjct: 120 NVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIAR 179
Query: 883 EVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
+++ I+V I G T LL+ + + + K VP
Sbjct: 180 DLASHRIRVMTIAPGLFDTPLLASLPE-EARAS--LGKQVP 217
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 5e-28
Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 54/237 (22%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
+I ++G ++GIG K L G ++V + R + D++
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI-----------------ADLST 44
Query: 777 ENDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
K+ + +VLA+ +D LV AG+ T + +++VN G +
Sbjct: 45 AEGRKQAIADVLAKCSKGMDGLVLCAGLGPQT-------KVLGNVVSVNYFGATELMDAF 97
Query: 836 LPSMLHSRRPGHILNISSNAGVR----------------------------PFAGLAVYT 867
LP++ + + ISS A G Y
Sbjct: 98 LPALKKGHQ-PAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYA 156
Query: 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV 924
G+K + + +++ I G +T LL + P+
Sbjct: 157 GSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPM 213
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 6e-27
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 4/177 (2%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTL-GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
V VTG + GIG +V+DL L VV AR + R + LQ S +LD
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ ++ + + E G +D+LVNNAG+ + + + N G
Sbjct: 63 IDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCT 122
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+LP + + G ++N+SS VR + K+ E I+ + ++ ++
Sbjct: 123 ELLPLI---KPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVE 176
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-26
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 1/123 (0%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
D A + F A P + A+ S+ ++QL + + + YL+ G +
Sbjct: 22 DLYAHPTVVARFSEMAALHPHREAIR-DRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCL 80
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
GV E E +AI +G YL ++ P A + +++
Sbjct: 81 GVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG 140
Query: 128 TSV 130
Sbjct: 141 LPC 143
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 6e-15
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 176 LKSSGKLNKEELPKLDSIAQIELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGHS 235
L + GKL++ L + ++ Q+ A++W ++L D++FF GG+S
Sbjct: 496 LTAHGKLDRAALLRRLEEPLERCASALDPDQRGCAQLWSELLGCEVGAADQDFFLCGGNS 555
Query: 236 LTAALCISKMNEE-LSLNLSIKDLFAHPTVQEMAALLE 272
L A ++ NL + DL A+ + + + LL
Sbjct: 556 LLALQLVALCQSAGAGANLGLADLQANSRLDQFSRLLR 593
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-25
Identities = 29/131 (22%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
+Y + +H +F Q + P+ +A+V + +T+ +L+ + + I +G + V
Sbjct: 34 EYPRDKTIHQLFEEQVSKRPNNVAIV-CENEQLTYHELNVKANQLARIFIEKGIGKDTLV 92
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
G++ME+ ++ I +A+ KAGG Y+P++ YP ++ +LDD++ +++T+ + +
Sbjct: 93 GIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN 152
Query: 128 TSVPKVKLEND 138
+
Sbjct: 153 IQFNGQVEIFE 163
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 15/198 (7%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVV----------AVARRIDRLENLKTSLQ 761
+ +V+ VTG+ GIG GA+VV + A +++ +
Sbjct: 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEIT 82
Query: 762 NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMI 821
A G + +V + +++ + G +D+LVNNAG++ ++ EE++A+I
Sbjct: 83 AAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVI 142
Query: 822 NVNIKGVLHCIGNILPSMLHSRRP-----GHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876
V++KG + + + G I+N SS AG++ G Y+ K I +
Sbjct: 143 AVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATL 202
Query: 877 SGALRQEVSDRNIKVTCI 894
+ E+ + V I
Sbjct: 203 TLVGAAEMGRYGVTVNAI 220
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-25
Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 10/140 (7%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHD---------GRSITFKQLDEWTDIVGTYLIN 58
Y + + AK P+ AV T+K+L+E + V +I+
Sbjct: 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH 74
Query: 59 QGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITK 118
+ G + V ++R L + I K+G Y+P+E P +L D++ ++
Sbjct: 75 AS-LHGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVC 133
Query: 119 GEYMDRLERTSVPKVKLEND 138
D +E KV +
Sbjct: 134 DNNFDGVELPPETKVLDTKN 153
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-25
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Query: 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM 71
L Y F+ PD A+ + G+++++++LDE + + L G GS V +
Sbjct: 463 TKPLTYWFKEAVNANPDAPALT-YSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYT 521
Query: 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP 131
+R LE I + + KAG YLP++ P + +L D+ + ++T E ++
Sbjct: 522 KRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYT 581
Query: 132 KVKLEND 138
L D
Sbjct: 582 GTTLFID 588
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 2e-17
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 19/119 (15%)
Query: 176 LKSSGKLNKEELPKLDSIA----------QIELDESMFQSQKNIAKIWCKILNLYTLDKD 225
L ++GK+NK LPK D ++E + IA+IW ++L +
Sbjct: 943 LTTNGKVNKRLLPKPDQDQLAEEWIGPRNEME---------ETIAQIWSEVLGRKQIGIH 993
Query: 226 ENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNETLKLDLI 284
++FF +GGH+L A S++ +EL ++L +K LF PT+ ++A L+N ++ L+ I
Sbjct: 994 DDFFALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGGSDGLQDVTI 1052
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 5e-25
Identities = 40/206 (19%), Positives = 83/206 (40%), Gaps = 20/206 (9%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTL---GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
I +TG + G+G LVK L+ L + R ++ + L+ L +I + ++D
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE-DLAKNHSNIHILEID 80
Query: 774 VTIENDVKKVVREVLAELG--HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLH 830
+ + K+V ++ +++L NNAG+ + + +E + N +
Sbjct: 81 LRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIM 140
Query: 831 CIGNILPSMLHSRRP----------GHILNISSNAG---VRPFAGLAVYTGTKYFIEGIS 877
LP + + + I+N+SS G G+ Y +K + +
Sbjct: 141 LAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAAT 200
Query: 878 GALRQEVSDRNIKVTCIQAGDVKTEL 903
+L ++ + I + G VKT++
Sbjct: 201 KSLSVDLYPQRIMCVSLHPGWVKTDM 226
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-24
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 33/200 (16%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-------------------AVARRIDRLE 754
+KV+ +TG+ G+G+ + LGAKVV V I
Sbjct: 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEI---- 61
Query: 755 NLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKL 814
G + +V D K+V + G + +++NNAG++ M+K
Sbjct: 62 ------VKNGGVAVADYNNVL---DGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTE 112
Query: 815 EEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874
+++ +I+V++ G P ++ G I+N SS AG+ G A Y K +
Sbjct: 113 KDYKLVIDVHLNGAFAVTKAAWPYFQ-KQKYGRIVNTSSPAGLYGNFGQANYASAKSALL 171
Query: 875 GISGALRQEVSDRNIKVTCI 894
G + L +E + NIK I
Sbjct: 172 GFAETLAKEGAKYNIKANAI 191
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 1e-24
Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 23/272 (8%)
Query: 668 LDNLRNSNLLPNVPLENNNSTEYTDTNKQGISISNAGTVNIVFGNTLANKVIFVTGSSSG 727
+ + +S + + T A + +L +KV+ +TG+ +G
Sbjct: 274 ILDYDDSRKPEYLKNQYPFMLNDYATLTNEARKLPANDASGAPTVSLKDKVVLITGAGAG 333
Query: 728 IGEQLVKDLVTLGAKVV--------AVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEND 779
+G++ K GAKVV I + A G + DV D
Sbjct: 334 LGKEYAKWFAKYGAKVVVNDFKDATKTVDEI----------KAAGGEAWPDQHDVA--KD 381
Query: 780 VKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSM 839
+ +++ V+ + G IDILVNNAG++ K +EW+++ V++ G + P
Sbjct: 382 SEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYF 441
Query: 840 LHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI--QAG 897
+ ++ G I+NI+S +G+ G A Y+ +K I G+S + E + NIKV + A
Sbjct: 442 V-EKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHAE 500
Query: 898 DVKTELLSHSTDRDVVDKYDISKAVPVLTTKE 929
T + D+++ ++ + L T +
Sbjct: 501 TAMTLSIMREQDKNLYHADQVAPLLVYLGTDD 532
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 107 bits (271), Expect = 1e-24
Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 6/136 (4%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVG---STVGVLM 71
L + + A+ P A G+S+T+++L E +D + + G S + V
Sbjct: 3 LLHAIQTHAETYPQTDAFR-SQGQSLTYQELWEQSDRAAAAIQKRI--SGEKKSPILVYG 59
Query: 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVP 131
+S++ KAG Y+P++ S P + +++ + ++I +
Sbjct: 60 HMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQ 119
Query: 132 KVKLENDFLSKMISEN 147
V E ++ S +
Sbjct: 120 TVSAEELLENEGGSVS 135
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 33/200 (16%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-------------------AVARRIDRLE 754
+V+ VTG+ G+G GA VV V I
Sbjct: 7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEI---- 62
Query: 755 NLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKL 814
+ G + V +K+V+ L G ID++VNNAG++ +
Sbjct: 63 ------RRRGGKAVANYDSVE---AGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISD 113
Query: 815 EEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874
E+W+ + V+++G M + G I+ +S +G+ G A Y+ K +
Sbjct: 114 EDWDIIQRVHLRGSFQVTRAAWDHMK-KQNYGRIIMTASASGIYGNFGQANYSAAKLGLL 172
Query: 875 GISGALRQEVSDRNIKVTCI 894
G++ L E NI I
Sbjct: 173 GLANTLVIEGRKNNIHCNTI 192
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-24
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 31/223 (13%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNAPGSIIVKKL 772
+ + VTG++ GIG LV+ LV ++A AR +++ LK+ + V L
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI---KDSRVHVLPL 58
Query: 773 DVTIENDVKKVVREVLAELG--HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVL 829
VT + + V +V +G + +L+NNAGV+ + + ++VN V+
Sbjct: 59 TVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVV 118
Query: 830 HCIGNILPSMLHSRRP----------GHILNISSNAG--VRPFAGLAVYTGTKYFIEGIS 877
+LP + ++ ++ ISS G +G A + Y +S
Sbjct: 119 LLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAY---RMS 175
Query: 878 GA--------LRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV 912
A L ++ D N+ V G V+T L + V
Sbjct: 176 KAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALTV 218
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 1e-23
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVG--STVGVLME 72
+ A+ D G T+ QL +D + ++ + + S V V
Sbjct: 6 MIDSIEQFAQTQADFPVYD-CLGERRTYGQLKRDSDSIAAFIDSLA--LLAKSPVLVFGA 62
Query: 73 RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSV 130
+ + +++A+ K+G Y+P++ P + ++++ AKPS++I E+ +E S+
Sbjct: 63 QTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISL 120
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 49/249 (19%), Positives = 83/249 (33%), Gaps = 40/249 (16%)
Query: 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS-IIVKK 771
+ VTG + GIG ++ K L + G VV R + + L+N+ ++ +
Sbjct: 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQ 68
Query: 772 LDVTIEND-VKKVVREVLAELGHIDILVNNAGVMY------------------------- 805
LDVT + + + G +DILVNNAGV
Sbjct: 69 LDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKI 128
Query: 806 -----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF 860
+ E + +N GV ++P +L I+N+SS+ G +
Sbjct: 129 YEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP-LLQLSDSPRIVNVSSSTGSLKY 187
Query: 861 AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISK 920
+ ++ V + +K D K L+ + Y SK
Sbjct: 188 VSNETALEILGDGDALTEERIDMVVNMLLK-------DFKENLIETNGWPSFGAAYTTSK 240
Query: 921 AVPVLTTKE 929
A T+
Sbjct: 241 ACLNAYTRV 249
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 7e-23
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVG--STVGVLME 72
L A TPD+ A V IT+KQL E +D + ++ ++ S + V
Sbjct: 3 LLEQIEKWAAETPDQTAFV-WRDAKITYKQLKEDSDALAHWISSEY--PDDRSPIMVYGH 59
Query: 73 RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPK 132
E I+++ KAG Y+P++ S P ++ + +++ ++++ + V
Sbjct: 60 MQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAV--TVTDLPVRI 117
Query: 133 VKLEND 138
V +N
Sbjct: 118 VSEDNL 123
|
| >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A Length = 91 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 1e-20
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 206 QKNIAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQ 265
+ +A+IW ++L + + +NFF+IGGHSL A ++++ E + L +K LFA PT++
Sbjct: 16 ESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIK 75
Query: 266 EMAALLENKSNE 277
+A + +S+
Sbjct: 76 ALAQYVATRSHH 87
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} Length = 613 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 2e-20
Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 33/200 (16%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-------------------AVARRIDRLE 754
+V VTG+ +G+G + GAKVV V I
Sbjct: 17 YDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEI---- 72
Query: 755 NLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKL 814
+ A G + V D KV+ + G +DILVNNAG++ + K
Sbjct: 73 ------RKAGGEAVADYNSVI---DGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSE 123
Query: 815 EEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874
++WN + +V++KG C P M + G I+ SSN+G+ G YT K +
Sbjct: 124 QDWNLVNDVHLKGSFKCTQAAFPYMK-KQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLI 182
Query: 875 GISGALRQEVSDRNIKVTCI 894
G++ + E + N+ I
Sbjct: 183 GLANTVAIEGARNNVLCNVI 202
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-18
Identities = 30/204 (14%), Positives = 54/204 (26%), Gaps = 28/204 (13%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
+ G TG LG H + + L R + L L
Sbjct: 16 YAVLGATGLLGHHAARA-IRAAGHDLVLIHRPSSQIQRLAYL------------------ 56
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNL-ILPYNALYKSNVLATKNL 440
+++ + +D +I +A + + S + T
Sbjct: 57 EPECRVAEML-------DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPF 109
Query: 441 IEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN 500
++ YV + P + +D + S Y K +
Sbjct: 110 YAACLQARVPRILYVGSAYAMPRHPQGLPGHEG-LFYDSLPSGKSSYVLCKWALDEQARE 168
Query: 501 AGQMGLPVSIVRCGNIGGSLEFKN 524
+ GLPV I G + G L+
Sbjct: 169 QARNGLPVVIGIPGMVLGELDIGP 192
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 21/203 (10%), Positives = 51/203 (25%), Gaps = 58/203 (28%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
V G++ +G + + G +V + R +++ L ++
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLA----YLEPECR--VAEMLDHA 69
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838
+++ +R + D ++ +AG W + +
Sbjct: 70 GLERALRGL-------DGVIFSAGYYPSR------PRRWQEEVASALGQTN--------- 107
Query: 839 MLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGD 898
A V +Y G+ + A+ +
Sbjct: 108 --------PFYAACLQARVPRI----LYVGS-------AYAMPRHPQGLPG--------- 139
Query: 899 VKTELLSHSTDRDVVDKYDISKA 921
E L + + Y + K
Sbjct: 140 --HEGLFYDSLPSGKSSYVLCKW 160
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 5e-17
Identities = 32/106 (30%), Positives = 50/106 (47%)
Query: 22 QAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISY 81
P K+A+ G I++ +L V L+ +G VG V E+ +E + Y
Sbjct: 11 DKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLY 70
Query: 82 IAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
+A +AGG YLPL T+Y L+ + DA+P IV+ D +
Sbjct: 71 LATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAA 116
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 8e-17
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 12/136 (8%)
Query: 1 MDSVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQG 60
+ L+D ++R A PD+ A + DG +T + + + + L+ G
Sbjct: 3 LHDFTLAD---------VYRRNAALFPDRTAFMV-DGVRLTHRDYLARAERLASGLLRDG 52
Query: 61 CIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120
G V +L + C E A+ G LP+ + VL D PS+V+ +
Sbjct: 53 VHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTD 112
Query: 121 YMDRLE--RTSVPKVK 134
Y D + S+ VK
Sbjct: 113 YRDIVAGVLPSLGGVK 128
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-16
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
Query: 15 LHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
+ +M R +A +P A V+ +T+ Q++ + L G G V +LM
Sbjct: 18 IGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN 77
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
+E+ + K G +P+ T + +L D+ +VI ++
Sbjct: 78 SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDA 131
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A Length = 329 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 209 IAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMA 268
IA + +L D D +FF +GGH L A ++++ +++ ++ + TV ++A
Sbjct: 16 IAAAFSSLLGCDVQDADADFFALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTVAKLA 75
Query: 269 ALLENKSNET 278
+++ + + T
Sbjct: 76 TIIDAEEDST 85
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 6e-16
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 1/113 (0%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ K A +D D S T+ +L+E + L G + ++M
Sbjct: 25 FAAYLFRLNETRAGKTAYID-DTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDT 83
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
+ ++++ AG + T PA +L + VI G + + +
Sbjct: 84 VALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQ 136
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} Length = 520 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-15
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 206 QKNIAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQ 265
+ +A++W ++LN+ + ++FF +GGHSL A +S M+ E +++ ++ LF PT+Q
Sbjct: 12 EARLAQVWEQVLNVPQVGALDDFFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQ 71
Query: 266 EMAALLEN 273
E+AA +E
Sbjct: 72 ELAAFIEE 79
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
A + + +TG++SG+G ++L GA V+ R + E ++ G + V++LD
Sbjct: 14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMA---GQVEVRELD 70
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM 804
+ D+ VR + D+L+NNAG+M
Sbjct: 71 LQ---DLSS-VRRFADGVSGADVLINNAGIM 97
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.4 bits (192), Expect = 7e-15
Identities = 122/773 (15%), Positives = 230/773 (29%), Gaps = 270/773 (34%)
Query: 1 MD-SVNLSDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEW----TDIVGTY 55
MD Y + L +F + D V D ++ +++D + GT
Sbjct: 7 MDFETGEHQYQYKDILS-VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 56 LI------NQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDD 109
+ Q +V V ++ ++ +S I + S +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK-------TEQRQPSMMTRMYI----- 113
Query: 110 AKPSIVITKGEYMDRLERTSVPKVKLENDFLSKMISENEKFHNHVPIAEEY---RKNLVQ 166
E DRL + K +V + Y R+ L++
Sbjct: 114 ----------EQRDRLYNDNQVFAKY-----------------NVSRLQPYLKLRQALLE 146
Query: 167 NFESLHLSI--LKSSGK--LNKEELPKLDSIAQIELDESMFQSQKNIAKIWCKILNLYTL 222
+ ++ I + SGK + + L Q ++D +F W LNL
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVC--LSYKVQCKMDFKIF---------W---LNLKNC 192
Query: 223 DKDENFFEIGGHSLTAALC--ISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNET-- 278
+ E E+ L I S + S L H E+ LL++K E
Sbjct: 193 NSPETVLEM-----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 279 LKLDLIHEIDVNSYKSLDENLNVRVQCFWKSVQLNSNKLKYGNVLLT----GVTGYL-GI 333
L L +V + K+ + N+ C +LLT VT +L
Sbjct: 248 LVLL-----NVQNAKAWNA-FNL--SC---------------KILLTTRFKQVTDFLSAA 284
Query: 334 HLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRL---ILVKSDL 390
L TL TP++ ++LKY L+ L +L +
Sbjct: 285 TTTHISLDHHSMTL------TPDEVK-----SLLLKY-----LDCRPQDLPREVLTTNPR 328
Query: 391 SLEMLG--LKNQ----DEYVSLSYE-----IDMIIHA-------AAFVNL-ILPYNALYK 431
L ++ +++ D + ++ + I+ ++ F L + P +A
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 432 SNVLA--------------TKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADF 477
+ +L+ L ++S + K +S SIY + +Y +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL--- 445
Query: 478 DDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNL--YIL 535
IV Y +I + F + +L+ L Y
Sbjct: 446 -----------HRSIVDHY------------NIPKT--------FDSDDLIPPYLDQYFY 474
Query: 536 KAITRLGY-------APDID----WYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNP 584
I G+ + +L+F FL + + +T N + I N
Sbjct: 475 SHI---GHHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNASGSILN------ 522
Query: 585 IHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRN 644
+ L Y K Y+ N+ +R
Sbjct: 523 -----TLQQLKFY---------------------------------KPYICDNDPKYER- 543
Query: 645 TLALLKSCDETYPETNDHTVR-QFLDNLRNSNLLPNVPLENNNSTEYTDTNKQ 696
L+ + + P+ ++ + ++ D LR + L + + + +KQ
Sbjct: 544 ---LVNAILDFLPKIEENLICSKYTDLLR-------IALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 6e-08
Identities = 75/540 (13%), Positives = 155/540 (28%), Gaps = 163/540 (30%)
Query: 453 HYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYL--VLNAGQMGLPVSI 510
Y D I + F +++ D D +S + E + ++ + VS
Sbjct: 15 QYQYKD-ILSVFEDAFVDNFDCKDVQDMP-------KSILSKEEIDHIIMSKD---AVSG 63
Query: 511 VRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV 570
F W L+ +++ + + + + S++ +
Sbjct: 64 TL-------RLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYI 113
Query: 571 NNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNK--REL-SEPLI---- 623
+++Y N N + K YN V + + KL + EL +
Sbjct: 114 EQRDRLY---NDNQVFAK----------YN---VSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 624 -----------QILRNKGKE--------YLTVNNSYCQRNTLALLKS-C---DETYPETN 660
+ + + +L + N L +L+ D + +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 661 DHT---------VRQFLDNLRNSNLLPNVPL-----ENNNSTEYTDTN-KQGISISNAGT 705
DH+ ++ L L S N L +N + + + K ++
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 706 VNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRL--ENLKTS---- 759
+ + T I + S + VK L+ K + R L E L T+
Sbjct: 278 TDFLSAAT--TTHISLDHHSMTLTPDEVKSLL---LKYLDC--RPQDLPREVLTTNPRRL 330
Query: 760 ------LQNAPG------SIIVKKLDVTIENDVKKV----VREVLAELGHIDILVNNAGV 803
+++ + KL IE+ + + R++ L + +A +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAHI 387
Query: 804 MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863
L + W +I ++ V++ LH ++
Sbjct: 388 PTILLS---LI--WFDVIKSDVMVVVN--------KLHKYS---LVEKQPKES------- 424
Query: 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP 923
I I L+ ++ + L H R +VD Y+I K
Sbjct: 425 ------TISIPSIYLELKVKLENE-------------YAL--H---RSIVDHYNIPKTFD 460
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 4e-05
Identities = 47/371 (12%), Positives = 98/371 (26%), Gaps = 85/371 (22%)
Query: 586 HIKTLVSVLNTYGYNIKTVP-YEKWFHK-LNKRELSEPLIQILRNKGKEYLTVNNSYCQR 643
H+ Y Y + +E F + +++ + IL + E + S
Sbjct: 6 HMDFETGEHQ-YQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMSKDAV 61
Query: 644 NTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVP-LENNNSTEYTDTNKQGISISN 702
+ L + E V++F++ + L N L + TE ++
Sbjct: 62 SGTLRLFWTLLSKQEE---MVQKFVEEV----LRINYKFLMSPIKTEQRQ--PSMMTRMY 112
Query: 703 AGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN 762
+ ++ + + K V+ R+ L+ +L
Sbjct: 113 IEQRDRLYND----------------NQVFAKYNVS----------RLQPYLKLRQALLE 146
Query: 763 A-PGSIIVKKLDVTIENDV-------KKV-VREVLAELGHIDILVNNAGVMYFTLMEKYK 813
P ++ + K +V + + + L
Sbjct: 147 LRPAKNVL----------IDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCNS 194
Query: 814 LEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873
E M+ + + HS ++ S A +R Y +
Sbjct: 195 PETVLEMLQ-KLLYQIDPNWTSRSD--HSSNIKLRIH-SIQAELRRLLKSKPYENC-LLV 249
Query: 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQS 933
L V + A ++ ++L + + V D + TT IS
Sbjct: 250 ------LL-NVQNAKA----WNAFNLSCKILLTTRFKQVTD------FLSAATTTHISLD 292
Query: 934 IIFALLQPSHS 944
L P
Sbjct: 293 HHSMTLTPDEV 303
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 9e-15
Identities = 28/156 (17%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHD-------GRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
L A++ +K A++ + S+ F ++ E T + + + +G G V
Sbjct: 21 LADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHV 80
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL-- 125
GV + +++ ++ A+ + +P+ Y LE +L+D++ + ++ +
Sbjct: 81 GVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140
Query: 126 --ERTSVPKVKL---ENDFLSKMISENEKFHNHVPI 156
E+T V +V + E + LS+++ + +V +
Sbjct: 141 VLEKTGVERVFVVGGEVNSLSEVMDSGSEDFENVKV 176
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-14
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 6/124 (4%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ D+ A+ RS+T+ +L + V V
Sbjct: 25 FPALSPAPTGAPADRPALRF-GERSLTYAELAAAAGATAGRIGG-----AGRVAVWATPA 78
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVK 134
+E ++ +A AG +PL L +L D+ PS+V+ + ++ +V
Sbjct: 79 METGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVD 138
Query: 135 LEND 138
++
Sbjct: 139 VDVR 142
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 4e-14
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 4/113 (3%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
L + QA++ IA+ D S T++ L ++ L S VG+ ++
Sbjct: 3 LDFWLYKQAQQNGHHIAITD-GQESYTYQNLYCEASLLAKRLKAYQ---QSRVGLYIDNS 58
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
++ I A A + T P + + + ++ R +
Sbjct: 59 IQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQ 111
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 5e-14
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 1/101 (0%)
Query: 18 MFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76
M R A R PD A+ G +T +L + V L G V V+ +
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117
I+ +A+H+ G L A L ++ + + +
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI 107
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 2e-13
Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ R++A + D+IA+ ++++LD D + G V V + E+
Sbjct: 30 LLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN 137
A+ + G + S+ + + + A+ + I Y R+ +V+ +
Sbjct: 89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKL 148
Query: 138 DFLSKMI 144
L +I
Sbjct: 149 PTLKNII 155
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-13
Identities = 22/155 (14%), Positives = 55/155 (35%), Gaps = 10/155 (6%)
Query: 15 LHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
LH K +++ G T+ ++ V + L G G + + +
Sbjct: 24 LHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPS 83
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERTS 129
E+ ++++ G PA L ++ ++IT+ Y +++ +
Sbjct: 84 SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD 143
Query: 130 VPKVKLEND-----FLSKMISENEKFHNHVPIAEE 159
V + +++ S++ +E V I+ +
Sbjct: 144 VKVMCVDSAPDGCLHFSELTQADENEAPQVDISPD 178
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 4e-13
Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ + P +A++ R +++ +LD + + T L +G G T V + E+
Sbjct: 35 ILTVGVQSHPHSLAIIC-GERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEF 93
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKVKLEN 137
I + A+ KAG L S+ L + + +P ++I ++ + + N
Sbjct: 94 YIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVN 153
Query: 138 DFLSKMI 144
++
Sbjct: 154 LSPEIIL 160
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 5e-13
Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 42/202 (20%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+L+TG G LG + L E + L DL+
Sbjct: 5 RLLVTGAAGQLGRVM---------------RER-----LAPMAEILRL-----ADLSPLD 39
Query: 381 ---DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLAT 437
V+ DL+ + + ++ D I+H +++ P+ + + N++
Sbjct: 40 PAGPNEECVQCDLA-------DANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNIIGL 91
Query: 438 KNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYL 497
NL E + + + S++ + D YG SK E L
Sbjct: 92 YNLYEAARAHGQPRIVFASSNHTI-----GYYPQTERLGPDVPARPDGLYGVSKCFGENL 146
Query: 498 VLN-AGQMGLPVSIVRCGNIGG 518
+ G ++VR G+
Sbjct: 147 ARMYFDKFGQETALVRIGSCTP 168
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 9e-13
Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 16 HYMFRN--QAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLME 72
+ + + P IA D H +IT+ + E + + + G + V E
Sbjct: 24 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 73 RCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
L++ + + G P Y L + ++ ++P++V + + ++
Sbjct: 84 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKIL 137
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 9e-13
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 19/133 (14%)
Query: 703 AGTVNIV---FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTS 759
A V +V G ++ K V + +G + L GA+VV R++D+ + S
Sbjct: 103 AAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS 162
Query: 760 LQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNN--AGVMYFTLMEKYKLEEW 817
+ N + V + + + V+ + G+ W
Sbjct: 163 V-NKRFKVNVTAAETADDASRAEAVKGA-------HFVFTAGAIGLELLP------QAAW 208
Query: 818 NAMINVNIKGVLH 830
++ I +
Sbjct: 209 QNESSIEIVADYN 221
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Query: 16 HYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
Y+F+N K +++ G T+ + + + G V +L+ C
Sbjct: 65 DYIFQN-ISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNC 123
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL----ERTSV 130
E+ +S++A G + PA + + ++IT+ Y+D++ V
Sbjct: 124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGV 183
Query: 131 PKV 133
V
Sbjct: 184 VIV 186
|
| >2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 3e-12
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 189 KLDSIAQIELDESMFQSQKNIAKIWCKIL-NLYTLDKDENFFEIGGHSLTAALCISKMNE 247
K + + +EL E+ + + + +W +IL + ++ +FF+ G S+ + ++ E
Sbjct: 10 KGAASSVLELTEAELVTAEAVRSVWQRILPKVLEVEDSTDFFKSGAASVDVVRLVEEVKE 69
Query: 248 ELS-LNLSIKDLFAHPTVQEMAALLENK 274
L L +D++ T + LL K
Sbjct: 70 LCDGLELENEDVYMASTFGDFIQLLVRK 97
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-12
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 18 MFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEW 77
+ A D IAV+D R +++++L++ D + L QG G T V + E
Sbjct: 32 ILTRHAA--SDSIAVID-GERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAEL 88
Query: 78 TISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEY 121
I++ A+ K G + S+ + L + +P+++I ++
Sbjct: 89 YITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQH 132
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-12
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 15 LHYMFRNQAKRTPD--KIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLM 71
R +R IA + G ++ + E + +G L N G +V + +
Sbjct: 25 AGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCS 84
Query: 72 ERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126
E C E+ I IA G G P Y L L +KP+IV + + +D++
Sbjct: 85 ENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVI 139
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 7e-12
Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 20 RNQAKRTPDKIAV--VDHDG--RSITFKQLDEWTDIVGTYLINQGCIV-GSTVGVLMERC 74
+A + P A+ V+ G F++L E + L + G V V++ R
Sbjct: 50 MEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV 109
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE--RTSVPK 132
EW + + +AG ++P + L +K ++ E + ++ + P
Sbjct: 110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS 169
Query: 133 VK 134
++
Sbjct: 170 LR 171
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 3e-10
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 23 AKRTPDKIAV--VDHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWT 78
A+ +P+K+A+ D G + TFK L ++D + + G G V + ++ ++
Sbjct: 66 ARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125
Query: 79 ISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGE 120
+ +HK G +P + ++ A +++ E
Sbjct: 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAE 167
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 9e-10
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 375 DLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNV 434
+N+Y SD +LE + ++ ++D ++H AA + + N
Sbjct: 40 AINDYE----YRVSDYTLE--------DLINQLNDVDAVVHLAATRGSQGKISE-FHDNE 86
Query: 435 LATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDYTVADFDDFMTTTSGYGQSKIV 493
+ T+NL + + N I + Y ST S Y + + E YG SK+
Sbjct: 87 ILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKELPL-------PDLMYGVSKLA 139
Query: 494 SEYLVLNAGQM-GLPVSIVRCGNI 516
E++ + GL + +R ++
Sbjct: 140 CEHIGNIYSRKKGLCIKNLRFAHL 163
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 49/205 (23%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
+L+TG +G +G L+ + K ++ DI + T
Sbjct: 2 ILVTGSSGQIGTELVPYLA-----------EKYGKKNVI--ASDI---------VQRDTG 39
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSL--SYEIDMIIHAAAFV------NLILPYNALYKSN 433
+ + D+S N+DE Y ID I H A + + P A YK N
Sbjct: 40 GIKFITLDVS-------NRDEIDRAVEKYSIDAIFHLAGILSAKGEKD---PALA-YKVN 88
Query: 434 VLATKNLIEFSFLNKIKSFHYVSTDSIY-PSTSENFQEDYTVADFDDFMTTTSGYGQSKI 492
+ T N++E + ++++ ST ++ P T +N T+ + +G +KI
Sbjct: 89 MNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITI------TRPRTMFGVTKI 142
Query: 493 VSEYLVLNAGQM-GLPVSIVRCGNI 516
+E L + GL V +R I
Sbjct: 143 AAELLGQYYYEKFGLDVRSLRYPGI 167
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 9e-09
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 18/124 (14%)
Query: 18 MFRNQAKRTPDKIAVV------DHDG--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGV 69
R A+ P A D DG ++T+ QL T V L G G V +
Sbjct: 29 ALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVI 87
Query: 70 LMERCLEWTISYIAIHKAGGGYLPLETSYPPAL------LESVLDDAKPSIVITKGEYMD 123
+ LE+ ++++ +AG +PL P +SVL D+ P ++T +D
Sbjct: 88 SAPQGLEYVVAFLGALQAGRIAVPL---SVPQGGVTDERSDSVLSDSSPVAILTTSSAVD 144
Query: 124 RLER 127
+ +
Sbjct: 145 DVVQ 148
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 18 MFRNQAKRTPDKIAVV---DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERC 74
+ R +A +P+K + ++T++QLD+ + L +G G V +L
Sbjct: 16 VVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPG 75
Query: 75 LEWTISYIAIHKAGGGYLPLETSYPPAL------LESVLDDAKPSIVITKGEYMDRLER 127
L +++ AG +P+ YPPA + ++ ++KP IV+ +++ +
Sbjct: 76 LPLIQAFLGCLYAGCIAVPI---YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTA 131
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 4e-08
Identities = 49/306 (16%), Positives = 94/306 (30%), Gaps = 43/306 (14%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
L+ GVTG +G L + + V +T ED + ++ D+++ D
Sbjct: 4 ALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPIN-YVQCDISDPDD 62
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILP-YNALYKSNVLATKNL 440
+ + + H ++N +N+
Sbjct: 63 SQAKLS---------------------PLTDVTHVFYVTWANRSTEQENCEANSKMFRNV 101
Query: 441 IE--FSFLNKIKSFHYVSTDSIYPSTSENF---QEDYTVADFDDF--MTTTSGYGQSKIV 493
++ +K + Y E++ + D Y I+
Sbjct: 102 LDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIM 161
Query: 494 SEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL--------GYAP 545
E + + GL S+ R GNI G + NLV L + AI + G
Sbjct: 162 LEEV---EKKEGLTWSVHRPGNIFGFSPYSMMNLVGT-LCVYAAICKHEGKVLRFTGCKA 217
Query: 546 DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVP 605
D Y + + D + + + + N+ +N N + K VL + ++
Sbjct: 218 AWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQ-FGVECGE 276
Query: 606 YEKWFH 611
YE+
Sbjct: 277 YEEGVD 282
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 38/220 (17%), Positives = 67/220 (30%), Gaps = 31/220 (14%)
Query: 409 EIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENF 468
+ D I+H A VN NV ++++ N K +S+ +
Sbjct: 46 KADFIVHLAG-VNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNP-- 102
Query: 469 QEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN-AGQMGLPVSIVRCGNIGGSLEFKNWNL 527
YG+SK+ E L+ A + G V I R N+ G N+N
Sbjct: 103 ------------------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNS 144
Query: 528 VDLNLYIL----KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNA-NKIYNFINT 582
V + I ++ VD + + + N + N
Sbjct: 145 VIATFCYKIARNEEIQVNDRNVELT----LNYVDDIVAEIKRAIEGTPTIENGVPTVPNV 200
Query: 583 NPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPL 622
+ + +V +L + + K + K S L
Sbjct: 201 FKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYL 240
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 36/198 (18%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
+L+TG G +G + L + RL DI +DL
Sbjct: 5 LLVTGAAGGVGSAIRPH-LGTLAHEV--------------RLSDI-------VDLGAAEA 42
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLI 441
+V DL+ + L + D IIH V++ P+N + ++N++ NL
Sbjct: 43 HEEIVACDLA-------DAQAVHDLVKDCDGIIHLGG-VSVERPWNDILQANIIGAYNLY 94
Query: 442 EFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSE-YLVLN 500
E + + S++ + T D + S YG SK E L
Sbjct: 95 EAARNLGKPRIVFASSNHTI-----GYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLY 149
Query: 501 AGQMGLPVSIVRCGNIGG 518
+ + +R G+
Sbjct: 150 YHKFDIETLNIRIGSCFP 167
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 54/223 (24%)
Query: 312 LNSNKLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYH 371
+N++KL NV++ G G++G +L+++ L +
Sbjct: 25 MNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHV---------------------- 62
Query: 372 MSLDLNNYT----------DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVN 421
+D N + ++ ++ + SL E D + H A +
Sbjct: 63 --VD--NLLSAEKINVPDHPAVRFSETSIT-------DDALLASLQDEYDYVFHLATYHG 111
Query: 422 LIL----PYNALYKSNVLATKNLIEFS-FLNKIKSFHYVSTDSIY--PSTSENFQEDYTV 474
P ++N L T L E ++K Y + + + + T
Sbjct: 112 NQSSIHDPLADH-ENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEET- 169
Query: 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPVSIVRCGNI 516
D S Y SKI E+ + + LP R N+
Sbjct: 170 -DIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNV 211
|
| >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} Length = 89 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-06
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 222 LDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKD--LFAHPTVQEMAALL 271
L D NF ++G SL++ + S+ E+L L+L + TV+ + +
Sbjct: 31 LTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFM 82
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 61/213 (28%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNK-TLLQRLEDIMLK-YHMSLDLNN 378
+L+TG TG G ++K L T K + R E LK M+++ N+
Sbjct: 23 TILITGGTGSFGKCFVRKVLDTTN----------AKKIIVYSRDE---LKQSEMAMEFND 69
Query: 379 YTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAF-------VNLILPYNALYK 431
R+ D+ ++ + +D+ IHAAA N P + K
Sbjct: 70 --PRMRFFIGDV-------RDLERLNYALEGVDICIHAAALKHVPIAEYN---PLECI-K 116
Query: 432 SNVLATKNLIEFSFLNKIKSFHYVSTD-SIYPSTSENFQEDYTVADFDDFMTTTSGYGQS 490
+N++ N+I N I +STD + P N YG +
Sbjct: 117 TNIMGASNVINACLKNAISQVIALSTDKAANPI---NL------------------YGAT 155
Query: 491 KIVSEYLVLNA----GQMGLPVSIVRCGNIGGS 519
K+ S+ L ++A G S+VR GN+ GS
Sbjct: 156 KLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGS 188
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 23/134 (17%)
Query: 408 YEIDMIIHAAAFVN----LILPYNAL--YKSNVLATKNLIE-----FSFLNKIKS----- 451
+E D ++H + +I A+ +NV+ T N++ + +K
Sbjct: 99 FEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGE 158
Query: 452 --FHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPV 508
+ + Y + + N + D +S Y SK+ + + + G+
Sbjct: 159 YGTPNIDIEEGYITITHNGRTDTLPYPKQ----ASSFYHLSKVHDSHNIAFTCKAWGIRA 214
Query: 509 SIVRCGNIGGSLEF 522
+ + G + G
Sbjct: 215 TDLNQGVVYGVKTD 228
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 30/187 (16%), Positives = 66/187 (35%), Gaps = 17/187 (9%)
Query: 408 YEIDMIIHAAAFVN---LILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY-PS 463
++I I AA ++ P A + N+ + +++ + KIK + S+ +++ P+
Sbjct: 67 HKITDIYLMAALLSATAEKNPAFA-WDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPT 125
Query: 464 TSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPVSIVRCGNIGGSLEF 522
T + YT+ M ++ YG SK E + G+ V +R +
Sbjct: 126 TPKENTPQYTI------MEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTP 179
Query: 523 KNWNLVDLNLYILKAITRLGYAPDI----DWYLEFTPVDFLTKSLVQLTTNVNNANKIYN 578
D + I + + + +D + + + KI++
Sbjct: 180 PGGGTTDYAVDIFYKAIA-DKKYECFLSSETKMPMMYMDDAIDATINIMKAPVEKIKIHS 238
Query: 579 FINTNPI 585
N +
Sbjct: 239 SYNLAAM 245
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 4e-06
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 232 GGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNETLKLDLIHEI--DV 289
G H+L + L+++ L +P + L +S+E L L+H I
Sbjct: 1 GSHNLACPTPKEDGLAQQQTQLNLRSLLVNPEGPTLMRLNSVQSSER-PLFLVHPIEGST 59
Query: 290 NSYKSLDENLNVRV 303
+ SL L++
Sbjct: 60 TVFHSLASRLSIPT 73
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 50/297 (16%), Positives = 94/297 (31%), Gaps = 59/297 (19%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLD-LNNY 379
V +TG+ G +G H+ + LL+R + ++ +D
Sbjct: 23 KVFITGICGQIGSHIAEL--------------------LLERGDKVVG-----IDNFATG 57
Query: 380 TDRLILVKSDLSLEMLGLKNQDEYVSL--SYEIDMIIHAAAFVNLILPYNALYKSNVLAT 437
+ +L+ + + L + D ++H AA + +N +
Sbjct: 58 RREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGG 117
Query: 438 KNLIEFSFLNKIKSFHYVSTDSIYPSTSEN--FQEDYTVADFDDFMTTTSGYGQSKIVSE 495
N+++ + N + F Y T Y + D+ S Y SK +E
Sbjct: 118 SNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRN------PANSSYAISKSANE 171
Query: 496 -YLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI-----DW 549
YL + GL R N+ G N+ + ++ G + D
Sbjct: 172 DYLEYS----GLDFVTFRLANVVGP-----RNVSGPLPIFFQRLSE-GKKCFVTKARRD- 220
Query: 550 YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVP 605
F V L ++ V+ V + Y+F + + IK L + P
Sbjct: 221 ---FVFVKDLARATVRAVDGV--GHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEP 272
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} Length = 212 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 9e-06
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 222 LDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271
L F ++G S+T + ++ S+ L+ ++ PT++ +A +
Sbjct: 150 LRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADEV 199
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} Length = 212 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 11/58 (18%), Positives = 24/58 (41%)
Query: 221 TLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNET 278
+ F E+G S+ AA I ++N+ L + ++ +P + + + T
Sbjct: 45 QIRDGSRFLELGLDSVIAAQWIREINKHYQLKIPADGIYTYPVFKAFTQWVGTQLQPT 102
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 35/140 (25%)
Query: 408 YEIDMIIHAAA-------------FVNLILPYNALYKSNVLATKNLIEFSFLNKIKS-FH 453
Y D H A + NV T NL+E
Sbjct: 72 YMPDSCFHLAGQVAMTTSIDNPCMDF----------EINVGGTLNLLEAVRQYNSNCNII 121
Query: 454 YVSTDSIY----PSTSENFQEDYTVADFDDFMT-TT-----SGYGQSKIVSEYLVLNAGQ 503
Y ST+ +Y + YT D + +T S YG SK ++ +L+ +
Sbjct: 122 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 181
Query: 504 M-GLPVSIVRCGNIGGSLEF 522
+ GL + R ++ G +F
Sbjct: 182 IFGLNTVVFRHSSMYGGRQF 201
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 393 EMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALY-----KSNVLATKNLIEFSFLN 447
++ L+ + + ++ +D + + AA + + + +N + + N+IE + +N
Sbjct: 77 HLVDLRVMENCLKVTEGVDHVFNLAADMGGMG-FIQSNHSVIMYNNTMISFNMIEAARIN 135
Query: 448 KIKSFHYVSTDSIYPSTSENFQ-EDYTVADFDDFMTTTSGYGQSKIVSEYLVLN-AGQMG 505
IK F Y S+ IYP + +G K+ +E L + G
Sbjct: 136 GIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFG 195
Query: 506 LPVSIVRCGNIGG 518
+ I R NI G
Sbjct: 196 IECRIGRFHNIYG 208
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 713 TLANKVIFVTGSSSG-IGEQLVKDLVTLGAKVVAVARRIDR 752
T +K + +TG+ G IG ++++ L+ GAKVV R +
Sbjct: 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSK 513
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 62/213 (29%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
VL+ GV G++G HL ++ L T +F ++ T
Sbjct: 26 KVLILGVNGFIGHHLSKRILETTDWEVFG--------------------------MDMQT 59
Query: 381 DRL---------ILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVN----LILPYN 427
DRL + D++ N++ + D+I+ A + P
Sbjct: 60 DRLGDLVKHERMHFFEGDIT------INKEWVEYHVKKCDVILPLVAIATPATYVKQPLR 113
Query: 428 ALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENF--QEDYTVA-DFDDFM--- 481
+ + A ++ + PSTSE + D D
Sbjct: 114 VF-ELDFEANLPIVRSAVKYGKHLVF--------PSTSEVYGMCADEQFDPDASALTYGP 164
Query: 482 --TTTSGYGQSKIVSEYLVLNAGQMGLPVSIVR 512
Y SK + + ++ G GL ++ R
Sbjct: 165 INKPRWIYACSKQLMDRVIWGYGMEGLNFTLFR 197
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 34/207 (16%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
++ + G G +G L Q+ + D + +E L +D
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVKD-------------GSLGGKPVEKFTL-----ID-VFQP 56
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSL-SYEIDMIIHAAAFV------NLILPYNALYKSN 433
+ + L E L D+I H AA V + Y+ N
Sbjct: 57 EAPAGFSGAVDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDK-G---YRIN 112
Query: 434 VLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENF-QEDYTVADFDDFMTTTSGYGQSKI 492
+ T+ L + + K + ++ S+ F + T + YG K
Sbjct: 113 LDGTRYLFDAIRIANGKDGYKPR--VVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKA 170
Query: 493 VSEYLVLNAGQM-GLPVSIVRCGNIGG 518
+ E L+ + + +R I
Sbjct: 171 ICELLLSDYSRRGFFDGIGIRLPTICI 197
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 45/155 (29%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
K I + G+S +G L+ + + G +V AV R ++++ L+ VKK DV
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLK-------VKKADV 55
Query: 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGN 834
+ ++V +V + D +++ + + + IK L
Sbjct: 56 SSLDEVCEVCKGA-------DAVISAFNPGW----------NNPDIYDETIKVYL----T 94
Query: 835 ILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869
I+ + AGV F + G
Sbjct: 95 IIDGV-------------KKAGVNRF----LMVGG 112
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 33/124 (26%)
Query: 408 YEIDMIIHAAA-------------FVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHY 454
++ +I++ AA F +NV+ T L+E
Sbjct: 97 RDVQVIVNFAAESHVDRSIENPIPFY----------DTNVIGTVTLLELVKKYPHIKLVQ 146
Query: 455 VSTDSIYPSTSEN--FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPVSIV 511
VSTD +Y S + F E+ +A S Y SK ++ + L + LPV +
Sbjct: 147 VSTDEVYGSLGKTGRFTEETPLA-------PNSPYSSSKASADMIALAYYKTYQLPVIVT 199
Query: 512 RCGN 515
RC N
Sbjct: 200 RCSN 203
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 409 EIDMIIHAAAFVNLILPYNA--LYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE 466
+++ I H A + ++ + +N +K L+ + +I F Y S+ + Y +
Sbjct: 68 DVEAIFHEGACSS-TTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYGGRTS 125
Query: 467 NFQEDYTVADFDDFMTTTSGYGQSKIVSE-YLVLNAGQMGLPVSIVR 512
+F E ++ + YG SK + + Y+ + + R
Sbjct: 126 DFIES------REYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFR 166
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 34/214 (15%), Positives = 68/214 (31%), Gaps = 63/214 (29%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
VL+ GV G++G HL ++ L + ++ L+ +
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYG--------------------------LDIGS 35
Query: 381 D---------RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNAL-- 429
D V+ D+S + + + D+++ A I Y
Sbjct: 36 DAISRFLNHPHFHFVEGDIS------IHSEWIEYHVKKCDVVLPLVAIATPIE-YTRNPL 88
Query: 430 --YKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE--------NFQEDYTVADFDD 479
++ + +I + + + PSTSE F ED++
Sbjct: 89 RVFELDFEENLRIIRYCVKYRKRIIF--------PSTSEVYGMCSDKYFDEDHSNLIVGP 140
Query: 480 FMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVR 512
Y SK + + ++ G + GL ++ R
Sbjct: 141 VNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFR 174
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 409 EIDMIIHAAAFVNLILPYNA--LYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE 466
+++ I H A + ++ + +N +K L+ + +I F Y S+ + Y +
Sbjct: 115 DVEAIFHEGACSS-TTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYGGRTS 172
Query: 467 NFQEDYTVADFDDFMTTTSGYGQSKIVSE-YLVLNAGQMGLPVSIVR 512
+F E ++ + +G SK + + Y+ + + R
Sbjct: 173 DFIES------REYEKPLNVFGYSKFLFDEYVRQILPEANSQIVGFR 213
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 409 EIDMIIHAAAFVN----LILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPST 464
++ ++ H A+ + P Y NV + ++L+ + ST +Y
Sbjct: 69 DVRLVYHLASHKSVPRSFKQPL--DYLDNVDSGRHLLALCTSVGVPKVVVGSTCEVYGQA 126
Query: 465 SEN-FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN-AGQMGLP-VSIVRCGN 515
ED ++ S Y SK+ E + P V IVR N
Sbjct: 127 DTLPTPEDSPLS-------PRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFN 173
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
+ V G++ + L+ +L G + VA+ R ++ L+ G+ + ++
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELR-----ERGASDIVVANLE--- 75
Query: 779 DVKKVVREVLAE-LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINV 823
E + ID +V AG T +K L + I
Sbjct: 76 -------EDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKT 114
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 32/126 (25%)
Query: 405 SLSYEIDMIIHAAA-------------FVNLILPYNALYKSNVLATKNLIEFSFLNKIKS 451
+D I+H AA F ++NV T+ L++ + +
Sbjct: 72 RELRGVDAIVHFAAESHVDRSIAGASVFT----------ETNVQGTQTLLQCAVDAGVGR 121
Query: 452 FHYVSTDSIYPSTSEN-FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQM-GLPVS 509
+VST+ +Y S + E + S Y SK S+ + + GL V
Sbjct: 122 VVHVSTNQVYGSIDSGSWTESSPLE-------PNSPYAASKAGSDLVARAYHRTYGLDVR 174
Query: 510 IVRCGN 515
I RC N
Sbjct: 175 ITRCCN 180
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
I + G++ G + V G +V + R RL + + +V DV
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG-----PRPAHVV-VGDVLQAA 59
Query: 779 DVKKVVREVLAELGHIDILVNNAG 802
DV K V G D ++ G
Sbjct: 60 DVDKTVA------GQ-DAVIVLLG 76
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 38/155 (24%)
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAA-------------FVNLILPYN 427
DR+ LV D++ + + L+ + D I+H AA F+
Sbjct: 54 DRVELVVGDIA-------DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFI------- 99
Query: 428 ALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTT--- 484
+N + T L+E + I+ FH+VSTD +Y + T
Sbjct: 100 ---HTNFIGTYTLLEAARKYDIR-FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY 155
Query: 485 ---SGYGQSKIVSEYLVLNAGQM-GLPVSIVRCGN 515
S Y +K S+ +V + G+ +I C N
Sbjct: 156 NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSN 190
|
| >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A Length = 88 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 221 TLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271
+D +E+F +S A + + ++ + L L+ +F +PT+ ++A L
Sbjct: 33 DIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAKRL 83
|
| >2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A* Length = 99 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 222 LDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271
+ +D+ F ++G S+ + +N+ +LNL L+ +PT+ E++ +
Sbjct: 41 IAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSGYI 90
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
I V G++ G +V + G +V+AV R + V L
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAA--------DRLGATVATLVKEPLV 54
Query: 779 DVKKVVREVLA 789
+ + V A
Sbjct: 55 LTEADLDSVDA 65
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 9e-04
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
IF+ GS+ +G+ L+K L T ++ A AR+++++ ++ DV
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYN--------NVKAVHFDVDWTP 54
Query: 779 DVKKVVREVLAELGHIDILVNNAG 802
+ E+ +L +D ++N +G
Sbjct: 55 E------EMAKQLHGMDAIINVSG 72
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 958 | |||
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 100.0 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 100.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 100.0 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 100.0 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 100.0 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 100.0 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 100.0 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 100.0 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 100.0 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 100.0 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 100.0 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 100.0 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 100.0 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 100.0 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 100.0 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 100.0 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 100.0 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 100.0 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 100.0 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 100.0 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 100.0 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 100.0 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 100.0 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 100.0 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 100.0 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 100.0 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 100.0 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 100.0 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 100.0 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 100.0 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 100.0 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 100.0 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 100.0 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 100.0 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 100.0 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 100.0 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 100.0 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 100.0 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 100.0 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 100.0 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 100.0 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 100.0 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 100.0 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 100.0 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 100.0 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 100.0 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 100.0 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 100.0 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 100.0 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 100.0 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 100.0 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 100.0 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 100.0 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 100.0 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 100.0 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 100.0 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 100.0 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 100.0 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 100.0 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 100.0 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 100.0 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 100.0 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 100.0 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 100.0 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 100.0 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 100.0 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 100.0 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 100.0 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 100.0 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 100.0 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 100.0 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 100.0 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 100.0 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 100.0 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 100.0 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 100.0 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 100.0 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 100.0 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 100.0 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 100.0 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 100.0 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 100.0 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 100.0 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 100.0 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 100.0 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 100.0 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 100.0 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 100.0 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 100.0 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 100.0 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 100.0 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 100.0 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 100.0 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 100.0 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 100.0 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 100.0 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 100.0 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 100.0 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 100.0 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 100.0 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 100.0 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 100.0 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 100.0 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 100.0 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 100.0 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 100.0 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 100.0 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 100.0 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 100.0 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 100.0 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 100.0 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 100.0 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 100.0 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 100.0 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 100.0 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 100.0 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 100.0 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 100.0 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 100.0 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 100.0 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 100.0 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 100.0 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 100.0 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 100.0 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 100.0 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 100.0 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 100.0 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 100.0 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 100.0 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 100.0 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 100.0 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 100.0 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 100.0 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 100.0 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 100.0 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 100.0 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 100.0 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 100.0 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 100.0 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 100.0 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 100.0 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 100.0 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 100.0 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 100.0 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 100.0 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 100.0 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 100.0 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 100.0 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 100.0 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 100.0 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 100.0 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 100.0 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 100.0 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 100.0 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 100.0 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 100.0 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 100.0 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 100.0 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 100.0 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 100.0 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 100.0 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 100.0 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 100.0 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 100.0 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 100.0 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.98 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.98 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.98 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.98 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 99.98 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.97 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.97 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.97 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.97 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.97 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 99.97 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.97 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.96 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.96 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.96 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 99.96 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.96 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.96 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.96 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.96 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.96 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.95 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.95 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.95 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.95 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.95 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.95 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.95 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.95 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.95 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.95 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.95 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.95 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.95 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.95 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.94 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.94 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.94 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.94 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.94 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.94 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.94 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.94 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.94 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.94 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.94 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.94 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.94 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.94 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.94 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.94 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.94 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.94 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.94 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.93 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.93 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.93 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.93 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.93 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.93 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.93 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.93 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.93 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.93 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.93 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.93 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.92 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.92 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.92 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.92 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.92 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.92 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.92 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.92 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.91 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.91 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.91 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.91 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.91 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.91 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.91 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.91 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.91 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.9 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.9 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.9 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.9 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.9 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.9 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.89 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.89 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.89 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.89 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.88 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.88 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.88 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.88 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.88 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.87 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.86 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.86 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.85 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.84 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.84 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.84 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.83 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.83 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.82 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.82 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.82 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.82 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.81 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.8 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.79 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.78 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.78 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.77 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.77 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.76 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.76 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.76 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.76 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.75 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.75 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.75 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.75 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.74 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.74 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.73 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.73 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.73 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.72 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.72 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.72 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.72 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.71 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 99.71 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.71 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.71 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.7 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.7 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.7 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 99.7 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.7 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.7 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.7 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 99.7 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.7 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.7 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.69 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 99.69 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 99.69 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.69 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 99.69 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.69 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.69 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 99.69 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.69 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.69 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 99.68 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 99.68 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.68 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.68 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.67 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.67 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.67 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.67 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.66 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 99.66 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.66 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 99.66 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.66 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.66 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 99.66 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.66 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.66 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.65 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.65 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 99.65 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.65 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.65 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 99.65 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.64 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.64 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.64 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 99.64 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.64 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.64 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.64 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.64 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.64 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 99.64 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 99.64 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.64 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 99.63 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.63 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.63 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 99.63 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 99.63 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.62 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.62 | |
| 2cq8_A | 110 | 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH | 99.62 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.62 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.62 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.61 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.61 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.61 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.61 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.6 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 99.6 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.6 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.6 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.6 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.6 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.59 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.59 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.59 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.59 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 99.59 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.58 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.58 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.58 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.58 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.58 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.58 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.58 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.57 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.57 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.57 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 99.57 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.57 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.57 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.57 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.56 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.56 | |
| 1dny_A | 91 | Non-ribosomal peptide synthetase peptidyl carrier | 99.56 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.56 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.56 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.56 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.56 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.55 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.55 | |
| 4i4d_A | 93 | Peptide synthetase NRPS type II-PCP; structural ge | 99.55 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.55 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.55 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.55 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.55 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.55 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.55 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.54 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.54 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.53 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.53 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.53 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.53 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.53 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.53 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.53 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.52 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.52 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.52 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.52 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.52 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.52 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.52 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.51 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.51 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.51 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.51 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.51 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.51 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.51 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.51 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.5 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.5 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.5 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.5 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.5 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.5 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.49 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.49 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.49 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.49 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.49 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.49 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.49 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.49 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.49 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.48 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.48 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.48 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.48 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.48 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.48 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.48 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.48 |
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-58 Score=542.42 Aligned_cols=463 Identities=21% Similarity=0.273 Sum_probs=266.9
Q ss_pred CCCccccccCCCCCccccc-------cccCCCCCHHHHHHHHHHHHHcCCCCCCCCCchhhcCccHHHHHHHHHHHHHHh
Q psy4557 177 KSSGKLNKEELPKLDSIAQ-------IELDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEEL 249 (958)
Q Consensus 177 t~nGKvDr~~L~~~~~~~~-------~~~~~~~~~~e~~l~~iw~~vL~~~~i~~~~~FF~lGgdSL~a~~l~~~i~~~~ 249 (958)
++|||+||++|+.+..... .....|.+++|+.|+++|+++|+.+.++.+||||++|||||+|++|+++|++ +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~e~~l~~~w~~~l~~~~i~~~~~ff~lGg~Sl~a~~l~~~~~~-~ 89 (508)
T 4f6l_B 11 SSGLVPRGSHMASMTGGQQMGRDPSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKR-F 89 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccHHHHhcCChhhhcccCCccCCCCCCCCHHHHHHHHHHHHHhCCCCCCCCCChHHcCchHHHHHHHHHHHHH-c
Confidence 4789999999987643221 1244678899999999999999999999999999999999999999999986 9
Q ss_pred CCCCChHHHhcCCcHHHHHHHHhcccccccccccchhhchhhhhhhhhhhhhhhhhhhh-h-cccccCccccCceEEecc
Q psy4557 250 SLNLSIKDLFAHPTVQEMAALLENKSNETLKLDLIHEIDVNSYKSLDENLNVRVQCFWK-S-VQLNSNKLKYGNVLLTGV 327 (958)
Q Consensus 250 ~~~l~~~~l~~~pTi~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~~VllTGa 327 (958)
|+++++.++|++||+++||++|........ ....++. .+...+..++. . ........+.++||||||
T Consensus 90 ~~~~~~~~~~~~~t~~~la~~~~~~~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~VLVTGa 158 (508)
T 4f6l_B 90 GHHISMQTLYQYKTVRQIVNYMYQNQQSLV--ALPDNLS---------ELQKIVMSRYNLGILEDSLSHRPLGNTLLTGA 158 (508)
T ss_dssp -----------------------------C--CCCSTHH---------HHHHHHHHHHTTCCCSTTSCBCCCEEEEESCT
T ss_pred CCCccHHHHhcCCcHHHHHHHHHhhccccc--cchhhhH---------HHHHHhhhcccccccccccccCCCCeEEEECC
Confidence 999999999999999999999976433111 1111110 00100001000 0 000111124578999999
Q ss_pred ccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCC-CCCCCCcHHHHHHH
Q psy4557 328 TGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSL-EMLGLKNQDEYVSL 406 (958)
Q Consensus 328 TGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~-~~lGL~~~~~~~~l 406 (958)
|||||+||+++|+. .+.+|+|++|..+...+.+|+.+.+..|..........++++++.||+++ +.++ +
T Consensus 159 tG~iG~~l~~~L~~-~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~---------~ 228 (508)
T 4f6l_B 159 TGFLGAYLIEALQG-YSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV---------L 228 (508)
T ss_dssp TSHHHHHHHHHTBT-TEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC---------C
T ss_pred ccchHHHHHHHHHh-cCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC---------C
Confidence 99999999999854 46799999999887778888888877663221112235799999999998 6666 3
Q ss_pred hcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCC------CCCCcccccccCcCCC
Q psy4557 407 SYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPST------SENFQEDYTVADFDDF 480 (958)
Q Consensus 407 ~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~------~~~~~e~~~~~~~~~~ 480 (958)
..++|+||||||.+++..+|..++++||.||++|+++|.. +.++|||+||.+| |.. ..++.|+.. ...
T Consensus 229 ~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~----~~~ 302 (508)
T 4f6l_B 229 PENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADV----YKG 302 (508)
T ss_dssp SSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCT-TSEECTTCSCCEECTTCS----CSS
T ss_pred ccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhh-ccCCccCCcCcccccccc----ccc
Confidence 4689999999999999899999999999999999999988 6699999999999 432 112223221 111
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcC---hhHHHHHHHHHHHHhCCcCCC--CCcCCccc
Q psy4557 481 MTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWN---LVDLNLYILKAITRLGYAPDI--DWYLEFTP 555 (958)
Q Consensus 481 ~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n---~~d~~~~l~~~~~~~g~~P~~--~~~~~~~p 555 (958)
..+.++|++|||++|+++..+.+.|++++|+|||+|||+..++.++ ..++++.+++.+...+.+|.. +..++|+|
T Consensus 303 ~~~~~~Y~~sK~~~E~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~v~ 382 (508)
T 4f6l_B 303 QLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSF 382 (508)
T ss_dssp BCCCSHHHHHHHHHHHHHHHHHHTTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEETTGGGSEEECEE
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHcCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCCCccCceEEEEc
Confidence 2367899999999999999988889999999999999999876543 246678899999888888864 46789999
Q ss_pred HHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccCCCchhHHHHhhccccccc
Q psy4557 556 VDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQILRNKGKEYLT 635 (958)
Q Consensus 556 VD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (958)
||++|++|+.++..+. .+.+||+.++.+++|.++++.+.+.+ ++.+++.+|...+... ...++..++... ...
T Consensus 383 v~DvA~ai~~~~~~~~-~~~~~nl~~~~~~s~~el~~~i~~~~--~~~~~~~~w~~~l~~~-~~~~~~~~~~~~---~~~ 455 (508)
T 4f6l_B 383 VDTTARQIVALAQVNT-PQIIYHVLSPNKMPVKSLLECVKRKE--IELVSDESFNEILQKQ-DMYETIGLTSVD---REQ 455 (508)
T ss_dssp HHHHHHHHHHHTTBCC-SCSEEEESCSCEEEHHHHHHHHHSSC--CEEECHHHHHHHHHTT-CCHHHHHHHHTG---GGS
T ss_pred HHHHHHHHHHHHhCCC-CCCEEEeCCCCCCCHHHHHHHHHHcC--CcccCHHHHHHHHHhc-CCccchhccccc---ccC
Confidence 9999999999987765 78999999999999999999999877 8999999999986543 233344443321 223
Q ss_pred cCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHC
Q psy4557 636 VNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNS 674 (958)
Q Consensus 636 ~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~ 674 (958)
....+|+.+|.+.|+++|+.||+++.+++++|++|+.+.
T Consensus 456 ~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~ 494 (508)
T 4f6l_B 456 QLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTI 494 (508)
T ss_dssp EECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHH
T ss_pred cceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999864
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=407.82 Aligned_cols=239 Identities=29% Similarity=0.398 Sum_probs=214.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+.+.++.++++|++++++++++++++.++|
T Consensus 3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred CCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
|+||+||||||+.. ..++.+++.++|+++|++|+.|+|+++|+++|+|+++ ++|+||||||++|..+.|+.+.|++||
T Consensus 83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~IVnisS~~g~~~~~~~~~Y~asK 161 (254)
T 4fn4_A 83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQ-GKGVIVNTASIAGIRGGFAGAPYTVAK 161 (254)
T ss_dssp SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTCSSSSCHHHHHHH
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEechhhcCCCCCChHHHHHH
Confidence 99999999999875 4678999999999999999999999999999999854 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh--hhhhhc--cccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD--VVDKYD--ISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~--~~~~~~--~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
+|+.+|+|+||.|++++|||||+|+||+|+|+|......+. ...... .....++.+|+|+|.+++|++ ++.+.++
T Consensus 162 aal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~R~g~pediA~~v~fLa-Sd~a~~i 240 (254)
T 4fn4_A 162 HGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVFLA-SDEASFV 240 (254)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTTCCCCBCHHHHHHHHHHHH-SGGGTTC
T ss_pred HHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHh-CchhcCC
Confidence 99999999999999999999999999999999976543222 111111 123457889999999999965 5778899
Q ss_pred cceEec
Q psy4557 947 NSILIE 952 (958)
Q Consensus 947 ~~~~i~ 952 (958)
+|..|.
T Consensus 241 TG~~i~ 246 (254)
T 4fn4_A 241 NGDAVV 246 (254)
T ss_dssp CSCEEE
T ss_pred cCCEEE
Confidence 988764
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=406.74 Aligned_cols=239 Identities=25% Similarity=0.299 Sum_probs=216.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+.+.++..+++|++++++++++++++.++||
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+||+||||||+....++.+++.++|++++++|+.|+|+++|+++|+|++++++|+|||+||.++..+.|+.+.|++||+|
T Consensus 86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaa 165 (255)
T 4g81_D 86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGG 165 (255)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTCHHHHHHHHH
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCchhHHHHHHH
Confidence 99999999999988999999999999999999999999999999999766667999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+.+|+|+||.|++++|||||+|+||+|+|+|..... +++..+... ..+..++.+|+|+|..++|++ ++.+.+++|..
T Consensus 166 l~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~-S~~a~~iTG~~ 244 (255)
T 4g81_D 166 IKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQRWGRPEELIGTAIFLS-SKASDYINGQI 244 (255)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTCSCBCGGGGHHHHHHHH-SGGGTTCCSCE
T ss_pred HHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCCCCcCHHHHHHHHHHHh-CchhCCCcCCE
Confidence 999999999999999999999999999999875432 222222221 223457889999999999965 57788999877
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
|.
T Consensus 245 i~ 246 (255)
T 4g81_D 245 IY 246 (255)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=398.27 Aligned_cols=236 Identities=24% Similarity=0.348 Sum_probs=204.0
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
|.++|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++ ++++..+++|++++++++++++++.+
T Consensus 23 Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 23 MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---GGGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp --CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---CCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999999999999999888777 45678899999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
+||+||+||||||+....++.+++.++|++++++|+.|+|+++|+++|+|. +.|+|||+||+++..+.|+.+.|++|
T Consensus 100 ~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~---~~G~IInisS~~~~~~~~~~~~Y~as 176 (273)
T 4fgs_A 100 EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLA---RGSSVVLTGSTAGSTGTPAFSVYAAS 176 (273)
T ss_dssp HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEE---EEEEEEEECCGGGGSCCTTCHHHHHH
T ss_pred HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHh---hCCeEEEEeehhhccCCCCchHHHHH
Confidence 999999999999999888999999999999999999999999999999995 25899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhh------hhh-ccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVV------DKY-DISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~------~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
|+|+.+|+|+||.||+++|||||+|+||+|+|+|.......+.. +.+ ...+..++.+|||+|.+++|++ ++.
T Consensus 177 Kaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v~FLa-Sd~ 255 (273)
T 4fgs_A 177 KAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGRVGRAEEVAAAALFLA-SDD 255 (273)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHH-SGG
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-Cch
Confidence 99999999999999999999999999999999987654322111 111 1223457889999999999965 577
Q ss_pred CccccceEec
Q psy4557 943 HSAVNSILIE 952 (958)
Q Consensus 943 ~~~i~~~~i~ 952 (958)
+.+++|..|.
T Consensus 256 a~~iTG~~i~ 265 (273)
T 4fgs_A 256 SSFVTGAELF 265 (273)
T ss_dssp GTTCCSCEEE
T ss_pred hcCccCCeEe
Confidence 7899988764
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=388.39 Aligned_cols=232 Identities=22% Similarity=0.325 Sum_probs=203.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+|+||++|||||++|||+++|+.|+++|++|++++|+.+ ++..+++.+.++++..+++|++|++++++++ .+|
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~-----~~g 78 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDGGNASALLIDFADPLAAKDSF-----TDA 78 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTTTTTTSS-----TTT
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHH-----HhC
Confidence 689999999999999999999999999999999999864 4566677777888999999999999887766 368
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+||+||||||+....++.+++.++|++++++|+.|+|+++|+++|+|++++++|+||||||+++..+.++.+.|++||+|
T Consensus 79 ~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~~~~Y~asKaa 158 (247)
T 4hp8_A 79 GFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGIRVPSYTAAKHG 158 (247)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSSCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCCCChHHHHHHHH
Confidence 99999999999988899999999999999999999999999999999866567999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+.+|||+||.||+++|||||+|+||+|+|+|..... ++...+.+ ...+..++.+|+|+|.+++|++ ++.+.+++|..
T Consensus 159 v~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v~fLa-Sd~a~~iTG~~ 237 (247)
T 4hp8_A 159 VAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAILERIPAGRWGHSEDIAGAAVFLS-SAAADYVHGAI 237 (247)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTSSCBCTHHHHHHHHHHT-SGGGTTCCSCE
T ss_pred HHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCCCCcCHHHHHHHHHHHh-CchhcCCcCCe
Confidence 999999999999999999999999999999975422 22211211 2224457889999999999964 57888999987
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
|.
T Consensus 238 i~ 239 (247)
T 4hp8_A 238 LN 239 (247)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=384.16 Aligned_cols=237 Identities=22% Similarity=0.240 Sum_probs=201.5
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..+|+||++|||||++|||+++|++|+++|++|++++|+.+..+.+ +++.+.++++..+++|++++++++++++++.++
T Consensus 2 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~-~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~ 80 (258)
T 4gkb_A 2 DLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFL-DALAQRQPRATYLPVELQDDAQCRDAVAQTIAT 80 (258)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHH-HHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHH-HHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999998775543 445555678889999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
||+||+||||||+..... .+.+.++|++++++|+.|+|+++|+++|+|++ ++|+||||||+++..+.|+.+.|++||
T Consensus 81 ~G~iDiLVNnAGi~~~~~-~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~--~~G~IVnisS~~~~~~~~~~~~Y~asK 157 (258)
T 4gkb_A 81 FGRLDGLVNNAGVNDGIG-LDAGRDAFVASLERNLIHYYAMAHYCVPHLKA--TRGAIVNISSKTAVTGQGNTSGYCASK 157 (258)
T ss_dssp HSCCCEEEECCCCCCCCC-TTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HTCEEEEECCTHHHHCCSSCHHHHHHH
T ss_pred hCCCCEEEECCCCCCCCC-ccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--cCCeEEEEeehhhccCCCCchHHHHHH
Confidence 999999999999875444 47899999999999999999999999999963 349999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-----hhhhhhhcc-cc-CCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-----RDVVDKYDI-SK-AVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-----~~~~~~~~~-~~-~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+|+.+|+|+||.|++++|||||+|+||+|+|+|...... +........ .+ ..++.+|+|+|.+++|++ ++.+
T Consensus 158 aav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plg~R~g~peeiA~~v~fLa-S~~a 236 (258)
T 4gkb_A 158 GAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPLGRRFTTPDEIADTAVFLL-SPRA 236 (258)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTTTTSCBCHHHHHHHHHHHH-SGGG
T ss_pred HHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHh-Cchh
Confidence 999999999999999999999999999999999765321 111111111 12 236789999999999965 5777
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..|.
T Consensus 237 ~~iTG~~i~ 245 (258)
T 4gkb_A 237 SHTTGEWLF 245 (258)
T ss_dssp TTCCSCEEE
T ss_pred cCccCCeEE
Confidence 899988764
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-44 Score=375.47 Aligned_cols=228 Identities=25% Similarity=0.355 Sum_probs=192.2
Q ss_pred cCCC-CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 710 FGNT-LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 710 ~~~~-l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
|..+ |+||++|||||++|||+++|+.|+++|++|++++|+.+.+++ ....++..+++|++|++++++++
T Consensus 4 f~~dlf~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~------~~~~~~~~~~~Dv~~~~~v~~~~---- 73 (242)
T 4b79_A 4 FQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA------PRHPRIRREELDITDSQRLQRLF---- 73 (242)
T ss_dssp BCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS------CCCTTEEEEECCTTCHHHHHHHH----
T ss_pred CCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh------hhcCCeEEEEecCCCHHHHHHHH----
Confidence 4443 699999999999999999999999999999999999876653 23457889999999999987765
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
++||+||+||||||+. .++.+++.++|++++++|+.|+|+++|+++|+|.+ ++|+||||||+++..+.++.+.|++
T Consensus 74 ~~~g~iDiLVNNAGi~--~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~--~~G~IVnisS~~~~~~~~~~~~Y~a 149 (242)
T 4b79_A 74 EALPRLDVLVNNAGIS--RDREEYDLATFERVLRLNLSAAMLASQLARPLLAQ--RGGSILNIASMYSTFGSADRPAYSA 149 (242)
T ss_dssp HHCSCCSEEEECCCCC--CGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HCEEEEEECCGGGTSCCSSCHHHHH
T ss_pred HhcCCCCEEEECCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH--cCCeEEEEeeccccCCCCCCHHHHH
Confidence 4689999999999986 35678899999999999999999999999999863 3599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
||+|+.+|||+||.||+++|||||+|+||+|+|+|...... ++..+.+ ...+..++.+|+|+|.+++|++ ++.+.++
T Consensus 150 sKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v~fLa-Sd~a~~i 228 (242)
T 4b79_A 150 SKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAAAFLC-GPGASFV 228 (242)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHT-SGGGTTC
T ss_pred HHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-CchhcCc
Confidence 99999999999999999999999999999999999765432 2222222 2234457889999999999965 5778899
Q ss_pred cceEec
Q psy4557 947 NSILIE 952 (958)
Q Consensus 947 ~~~~i~ 952 (958)
+|..|.
T Consensus 229 TG~~l~ 234 (242)
T 4b79_A 229 TGAVLA 234 (242)
T ss_dssp CSCEEE
T ss_pred cCceEE
Confidence 998764
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-43 Score=370.92 Aligned_cols=223 Identities=24% Similarity=0.297 Sum_probs=196.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|++|||||++|||+++|+.|+++|++|++++|+.++++++.+ ...++..+++|++++++++++++++.++||+||
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iD 77 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK----ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRID 77 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT----TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5999999999999999999999999999999999887776553 345788999999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
+||||||+....++.+++.++|++++++|+.|+|+++|.++|+|.+. +|+|||+||+++..+.|+...|++||+|+.+
T Consensus 78 iLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~G~IInisS~~~~~~~~~~~~Y~asKaal~~ 155 (247)
T 3ged_A 78 VLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--KGRIINIASTRAFQSEPDSEAYASAKGGIVA 155 (247)
T ss_dssp EEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEECCGGGTSCCTTCHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCcEEEEeecccccCCCCCHHHHHHHHHHHH
Confidence 99999999988999999999999999999999999999999999743 4999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
|||+||.|+++ |||||+|+||+|+|++...... +. ....+..++.+|+|+|.+++|++++ .+++|..|.
T Consensus 156 ltk~lA~ela~-~IrVN~I~PG~i~t~~~~~~~~-~~---~~~~Pl~R~g~pediA~~v~fL~s~---~~iTG~~i~ 224 (247)
T 3ged_A 156 LTHALAMSLGP-DVLVNCIAPGWINVTEQQEFTQ-ED---CAAIPAGKVGTPKDISNMVLFLCQQ---DFITGETII 224 (247)
T ss_dssp HHHHHHHHHTT-TSEEEEEEECSBCCCC---CCH-HH---HHTSTTSSCBCHHHHHHHHHHHHHC---SSCCSCEEE
T ss_pred HHHHHHHHHCC-CCEEEEEecCcCCCCCcHHHHH-HH---HhcCCCCCCcCHHHHHHHHHHHHhC---CCCCCCeEE
Confidence 99999999997 9999999999999998654322 11 1122345788999999999998863 478877663
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=403.60 Aligned_cols=505 Identities=18% Similarity=0.219 Sum_probs=319.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCC------hhhHHHHHHHHHHHhccccccccccCceEEecccCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETP------NKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLS 391 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~------~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~ 391 (958)
+++.++||||++-||..+.+.|+++ +.+|++..|... .....+.+.+.+... ..+.. .|++
T Consensus 7 ~gkvalVTGas~GIG~a~A~~la~~-Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~---------g~~~~---~d~~ 73 (604)
T 2et6_A 7 KDKVVIITGAGGGLGKYYSLEFAKL-GAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN---------GGVAV---ADYN 73 (604)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECC-----------CHHHHHHHHHHHT---------TCEEE---EECC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHc-CCEEEEEeCCccccccccchHHHHHHHHHHHhc---------CCeEE---EEcC
Confidence 4578999999999999999999876 467777665431 111222222222211 11222 2443
Q ss_pred CCCCCCCcH-HHHHHH---hcccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEe
Q psy4557 392 LEMLGLKNQ-DEYVSL---SYEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVS 456 (958)
Q Consensus 392 ~~~lGL~~~-~~~~~l---~~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vS 456 (958)
.. ++. ..++.. ...+|++||||+..... .+ ++...++|+.|+..+.+.+. +.+..+++++|
T Consensus 74 d~----~~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnis 149 (604)
T 2et6_A 74 NV----LDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTS 149 (604)
T ss_dssp CT----TCHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CH----HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 22 111 122222 35799999999964321 12 34567899999999887653 22335899999
Q ss_pred ccccc-CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHH
Q psy4557 457 TDSIY-PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLN 531 (958)
Q Consensus 457 T~~v~-~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~ 531 (958)
|.+.. +.. ....|+.||..-+.+.+.. ..+|+.+..+-||. .|.. .
T Consensus 150 S~ag~~~~~------------------~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg~-----~T~m------~ 200 (604)
T 2et6_A 150 SPAGLYGNF------------------GQANYASAKSALLGFAETLAKEGAKYNIKANAIAPLA-----RSRM------T 200 (604)
T ss_dssp CHHHHHCCT------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-----CCHH------H
T ss_pred CHHHcCCCC------------------CchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccCC-----cCcc------c
Confidence 86542 210 1236999999999887653 34699999999972 1111 0
Q ss_pred HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc-CCCCceEEecCCCCC--CHHHHHHHHHHcCCCccccChHH
Q psy4557 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV-NNANKIYNFINTNPI--HIKTLVSVLNTYGYNIKTVPYEK 608 (958)
Q Consensus 532 ~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~-~~~~~v~h~~n~~~~--~~~~l~~~l~~~g~~~~~v~~~e 608 (958)
. ...|. ........+.+|..++.++... .-.+.++.+...... .|. +..|.-.. +...
T Consensus 201 ----~-----~~~~~--~~~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdgG~~~~~~~~------~~~~~~~~--~~~~ 261 (604)
T 2et6_A 201 ----E-----SIMPP--PMLEKLGPEKVAPLVLYLSSAENELTGQFFEVAAGFYAQIRWE------RSGGVLFK--PDQS 261 (604)
T ss_dssp ----H-----TTSCH--HHHTTCSHHHHHHHHHHHTSSSCCCCSCEEEEETTEEEEEEEE------ECCCEECC--SSTT
T ss_pred ----c-----ccCCh--hhhccCCHHHHHHHHHHHhCCcccCCCCEEEECCCeEEEEEEE------eccceecC--CCCC
Confidence 0 00000 0011235678899999887643 224667776543111 110 00111000 0000
Q ss_pred HHHHHhccCCCchhHHHHhhccccccc-cCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q psy4557 609 WFHKLNKRELSEPLIQILRNKGKEYLT-VNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVPLENNNS 687 (958)
Q Consensus 609 W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 687 (958)
|.- ..+...+..-. .+.. ..+.+ .+..+|.--.++. ..+.+.-.+|+...
T Consensus 262 ~~~--------~~v~~~~~~~~-~~~~~~~~~~-----------~~~~~P~~~~d~~----~l~~ka~~~~~~~~----- 312 (604)
T 2et6_A 262 FTA--------EVVAKRFSEIL-DYDDSRKPEY-----------LKNQYPFMLNDYA----TLTNEARKLPANDA----- 312 (604)
T ss_dssp CCH--------HHHHHHHHHHT-CCCCTTSCGG-----------GSCBCCSSSCCHH----HHHHHHTTSCCCCC-----
T ss_pred CCH--------HHHHHHHHHhh-chhhcccccc-----------ccccCcchHHHHH----HHHHHHHhCCcccc-----
Confidence 100 00111111000 0000 00000 0112332211122 22222222222110
Q ss_pred CccccccccccccCCCcccccccCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcE
Q psy4557 688 TEYTDTNKQGISISNAGTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI 767 (958)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~ 767 (958)
...+..+++||++|||||++|||+++|++|+++|++|++.+|+ .++++.+++.+.++++
T Consensus 313 -------------------~~~~~~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~--~~~~~~~~i~~~g~~~ 371 (604)
T 2et6_A 313 -------------------SGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK--DATKTVDEIKAAGGEA 371 (604)
T ss_dssp -------------------TTCCCCCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS--CCHHHHHHHHHTTCEE
T ss_pred -------------------ccccccccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCc--cHHHHHHHHHhcCCeE
Confidence 0011135789999999999999999999999999999999864 3455666676666777
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcE
Q psy4557 768 IVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGH 847 (958)
Q Consensus 768 ~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~ 847 (958)
..+.+|++ ++++++++++.+.||+||+||||||+....++.+++.++|+++|++|++|+++++|+++|+|+++ ++|+
T Consensus 372 ~~~~~Dv~--~~~~~~~~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~ 448 (604)
T 2et6_A 372 WPDQHDVA--KDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEK-QFGR 448 (604)
T ss_dssp EEECCCHH--HHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEE
T ss_pred EEEEcChH--HHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCE
Confidence 78888884 55678899999999999999999999877888999999999999999999999999999999754 4699
Q ss_pred EEEecCccCcCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCH
Q psy4557 848 ILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTT 927 (958)
Q Consensus 848 IV~isS~~g~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p 927 (958)
|||+||.+|..+.++.+.|++||+|+.+|+++|+.|++++|||||+|+||. .|+|.......+ .....+|
T Consensus 449 IVnisS~ag~~~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~~~~~~~---------~~~~~~p 518 (604)
T 2et6_A 449 IINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTLSIMREQ---------DKNLYHA 518 (604)
T ss_dssp EEEECCHHHHSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC------------------CCSSCG
T ss_pred EEEECChhhccCCCCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCccccccCchh---------hccCCCH
Confidence 999999999999999999999999999999999999999999999999995 999864321110 1234689
Q ss_pred HHHHHHHHHHhcCCCCccccceEec
Q psy4557 928 KEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 928 ~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+++|..++|+++. ... ++|..+.
T Consensus 519 e~vA~~v~~L~s~-~~~-itG~~~~ 541 (604)
T 2et6_A 519 DQVAPLLVYLGTD-DVP-VTGETFE 541 (604)
T ss_dssp GGTHHHHHHTTST-TCC-CCSCEEE
T ss_pred HHHHHHHHHHhCC-ccC-CCCcEEE
Confidence 9999999997654 444 7776553
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=369.36 Aligned_cols=228 Identities=19% Similarity=0.266 Sum_probs=194.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+|+||++||||||+|||+++|++|+++|++|++++|+.+. ...+...+++|++++++++++++++.++||
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 77 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE----------GLPEELFVEADLTTKEGCAIVAEATRQRLG 77 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT----------TSCTTTEEECCTTSHHHHHHHHHHHHHHTS
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh----------CCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999999999999999998541 112234688999999999999999999999
Q ss_pred CccEEEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC-CChhhhHH
Q psy4557 793 HIDILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA-GLAVYTGT 869 (958)
Q Consensus 793 ~iDilInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~-~~~~Y~as 869 (958)
+||+||||||+.. ..++.+++.++|++++++|++|+++++|+++|+|+++ ++|+|||+||+++..+.| +...|++|
T Consensus 78 ~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Iv~isS~~~~~~~~~~~~~Y~as 156 (261)
T 4h15_A 78 GVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVAR-GSGVVVHVTSIQRVLPLPESTTAYAAA 156 (261)
T ss_dssp SCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTTCHHHHHH
T ss_pred CCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhc-CCceEEEEEehhhccCCCCccHHHHHH
Confidence 9999999999864 3578999999999999999999999999999999854 569999999999999877 67899999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC---------CChhhhh----h-hccccCCCCCCHHHHHHHHH
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS---------TDRDVVD----K-YDISKAVPVLTTKEISQSII 935 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~---------~~~~~~~----~-~~~~~~~~~~~p~~ia~~i~ 935 (958)
|+|+.+|+|+|+.|++++|||||+|+||+|+|+|.... .+.+... . ....+..++.+|||+|..++
T Consensus 157 Kaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peevA~~v~ 236 (261)
T 4h15_A 157 KAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIPLGRPAKPEEVANLIA 236 (261)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCTTSSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCCCCCCcCHHHHHHHHH
Confidence 99999999999999999999999999999999985421 1111111 1 11123456889999999999
Q ss_pred HHhcCCCCccccceEec
Q psy4557 936 FALLQPSHSAVNSILIE 952 (958)
Q Consensus 936 ~~l~~~~~~~i~~~~i~ 952 (958)
|++ ++.+.+++|..|.
T Consensus 237 fLa-S~~a~~itG~~i~ 252 (261)
T 4h15_A 237 FLA-SDRAASITGAEYT 252 (261)
T ss_dssp HHH-SGGGTTCCSCEEE
T ss_pred HHh-CchhcCccCcEEE
Confidence 965 5778899988764
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=362.64 Aligned_cols=237 Identities=18% Similarity=0.179 Sum_probs=206.8
Q ss_pred CCCCCCEEEEEcCCc--hHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC-CcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP-GSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 712 ~~l~~k~~lITGas~--GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
.+|+||++|||||+| |||+++|+.|+++|++|++++|+.+.++++.+++.+.+ .++.++++|++++++++++++++.
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG 81 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 368999999999765 99999999999999999999999999999998887654 478889999999999999999999
Q ss_pred HHcCCccEEEEccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 789 AELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
+.||++|+||||||+... ..+.+.+.++|+.++++|+.+++.+++.+.|+|. ++|+|||+||+++..+.|++.
T Consensus 82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~---~~G~IVnisS~~~~~~~~~~~ 158 (256)
T 4fs3_A 82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMP---EGGSIVATTYLGGEFAVQNYN 158 (256)
T ss_dssp HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCT---TCEEEEEEECGGGTSCCTTTH
T ss_pred HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCEEEEEeccccccCcccch
Confidence 999999999999998643 3467889999999999999999999999988663 459999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh-hhhhhc-cccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD-VVDKYD-ISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~-~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.|++||+|+.+|+|+||.||+++|||||+|+||+|+|+|.......+ ..+.+. ..+..++.+|+|+|..++|++ ++.
T Consensus 159 ~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R~g~peevA~~v~fL~-Sd~ 237 (256)
T 4fs3_A 159 VMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLKRNVDQVEVGKTAAYLL-SDL 237 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHH-SGG
T ss_pred hhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-Cch
Confidence 99999999999999999999999999999999999999977654322 222222 223457899999999999965 577
Q ss_pred CccccceEec
Q psy4557 943 HSAVNSILIE 952 (958)
Q Consensus 943 ~~~i~~~~i~ 952 (958)
+.+++|..|.
T Consensus 238 a~~iTG~~i~ 247 (256)
T 4fs3_A 238 SSGVTGENIH 247 (256)
T ss_dssp GTTCCSCEEE
T ss_pred hcCccCCEEE
Confidence 7899988764
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-40 Score=353.27 Aligned_cols=243 Identities=18% Similarity=0.227 Sum_probs=202.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|++++++++++++++.+.
T Consensus 3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~- 81 (252)
T 3h7a_A 3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH- 81 (252)
T ss_dssp --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-
Confidence 4578999999999999999999999999999999999999999999999887888999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|+++ +.|+||++||.++..+.++.+.|++||+
T Consensus 82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asKa 160 (252)
T 3h7a_A 82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAH-GQGKIFFTGATASLRGGSGFAAFASAKF 160 (252)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEEGGGTCCCTTCHHHHHHHH
T ss_pred CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHHHcCCCCCCccHHHHHH
Confidence 999999999999888888999999999999999999999999999999854 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEE-EEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKV-TCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv-~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+.+|+++|+.|++++|||| |+|+||+|+|+|........ ..........+..+|+|+|+.++|+++++...+++++.
T Consensus 161 a~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~~~-~~~~~~~~~~~~~~pedvA~~~~~l~s~~~~~~~~~i~ 239 (252)
T 3h7a_A 161 GLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQM-FGKDALANPDLLMPPAAVAGAYWQLYQQPKSAWTFEME 239 (252)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEEC----------------------------CCHHHHHHHHHHHHHCCGGGBCSEEE
T ss_pred HHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccchhh-hhhhhhcCCccCCCHHHHHHHHHHHHhCchhcceeeEE
Confidence 99999999999999999999 99999999999976532211 11111111223789999999999999999999999999
Q ss_pred ecCCCCC
Q psy4557 951 IEPPLAS 957 (958)
Q Consensus 951 i~p~~~~ 957 (958)
+.|.+.+
T Consensus 240 ~~~~~~~ 246 (252)
T 3h7a_A 240 IRPYGEG 246 (252)
T ss_dssp EBCC---
T ss_pred eeecCCC
Confidence 9998753
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=352.27 Aligned_cols=240 Identities=37% Similarity=0.596 Sum_probs=205.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|++++++++++++++.+.+|+
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 81 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR 81 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 67999999999999999999999999999999999999999999999887888999999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.++ +.|+|||+||.++..+.++.+.|++||+|+
T Consensus 82 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~~~~~~~~~~~~Y~asKaal 160 (264)
T 3tfo_A 82 IDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ-RSGQIINIGSIGALSVVPTAAVYCATKFAV 160 (264)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTCCCTTCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEEcCHHHcccCCCChhHHHHHHHH
Confidence 9999999999888888999999999999999999999999999999744 469999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecC
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p 953 (958)
.+|+++|+.|+ + |||||+|+||+|+|+|............... ......+|+|+|++++|+++.+....+.++.|.|
T Consensus 161 ~~l~~~la~e~-~-gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~-~~~~~~~pedvA~~v~~l~s~~~~~~~~~i~i~p 237 (264)
T 3tfo_A 161 RAISDGLRQES-T-NIRVTCVNPGVVESELAGTITHEETMAAMDT-YRAIALQPADIARAVRQVIEAPQSVDTTEITIRP 237 (264)
T ss_dssp HHHHHHHHHHC-S-SEEEEEEEECCC------------------------CCCHHHHHHHHHHHHHSCTTEEEEEEEEEE
T ss_pred HHHHHHHHHhC-C-CCEEEEEecCCCcCcccccccchhHHHHHHh-hhccCCCHHHHHHHHHHHhcCCccCccceEEEec
Confidence 99999999998 5 9999999999999999765322211111111 1112479999999999999999999999999999
Q ss_pred CCCC
Q psy4557 954 PLAS 957 (958)
Q Consensus 954 ~~~~ 957 (958)
+.++
T Consensus 238 ~~~~ 241 (264)
T 3tfo_A 238 TASG 241 (264)
T ss_dssp CC--
T ss_pred Cccc
Confidence 8765
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=355.83 Aligned_cols=245 Identities=23% Similarity=0.369 Sum_probs=209.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCc-EEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS-IIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~-~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++...++. +.++++|++|+++++++++++.+.+
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 109 (281)
T 4dry_A 30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF 109 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999999999999888887654333 5889999999999999999999999
Q ss_pred CCccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 792 GHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR-RPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 792 g~iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~-~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ ..|+|||+||.++..+.++...|++|
T Consensus 110 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~as 189 (281)
T 4dry_A 110 ARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTAT 189 (281)
T ss_dssp SCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCTTCHHHHHH
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCCCChhHHHH
Confidence 999999999998754 6788999999999999999999999999999998654 36899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+|+++|+++|+.|++++||+||+|+||+|+|+|......... .........+..+|+|+|++++|++++|....++++
T Consensus 190 Kaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~-~~~~~~~~~~~~~pedvA~~v~fL~s~~~~~~i~~~ 268 (281)
T 4dry_A 190 KHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMSTGVL-QANGEVAAEPTIPIEHIAEAVVYMASLPLSANVLTM 268 (281)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------CEEE-CTTSCEEECCCBCHHHHHHHHHHHHHSCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhhcchhh-hhhhcccccCCCCHHHHHHHHHHHhCCCccCccccE
Confidence 9999999999999999999999999999999999764322111 111112234678999999999999999999999999
Q ss_pred EecCCCCCC
Q psy4557 950 LIEPPLASI 958 (958)
Q Consensus 950 ~i~p~~~~~ 958 (958)
.|.|+.+|.
T Consensus 269 ~i~p~~~~~ 277 (281)
T 4dry_A 269 TVMATRMPL 277 (281)
T ss_dssp EEEETTSSC
T ss_pred EEEeccccc
Confidence 999998863
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=343.84 Aligned_cols=230 Identities=21% Similarity=0.301 Sum_probs=200.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
|++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.. ++.++.+|++++++++++++++.+.+|+
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 77 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGN---AVIGIVADLAHHEDVDVAFAAAVEWGGL 77 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---GEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999999999999999999999988888742 5888999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+ .+|+||++||.++..+.++.+.|++||+|+
T Consensus 78 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~~~~iv~isS~~~~~~~~~~~~Y~asKaa~ 155 (235)
T 3l6e_A 78 PELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGE--RGGVLANVLSSAAQVGKANESLYCASKWGM 155 (235)
T ss_dssp CSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEECCEECCSSCSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH--cCCEEEEEeCHHhcCCCCCCcHHHHHHHHH
Confidence 999999999987778889999999999999999999999999999963 236999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecC
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p 953 (958)
++|+++|+.|++++|||||+|+||+|+|+|....... ...++.+|+|+|+.++|+++++...+++++.+.|
T Consensus 156 ~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~---------~~~~~~~pedvA~~v~~l~~~~~~~~i~~i~~~~ 226 (235)
T 3l6e_A 156 RGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDHV---------DPSGFMTPEDAAAYMLDALEARSSCHVTDLFIGR 226 (235)
T ss_dssp HHHHHHHHHHTTTSSEEEEEEEEEEECCCC--------------------CBCHHHHHHHHHHHTCCCSSEEEEEEEEEE
T ss_pred HHHHHHHHHHhhccCCEEEEEeCCCccCcchhccCCC---------CCcCCCCHHHHHHHHHHHHhCCCCcceeeEEEec
Confidence 9999999999999999999999999999987543211 1225789999999999999999999999999999
Q ss_pred CCCC
Q psy4557 954 PLAS 957 (958)
Q Consensus 954 ~~~~ 957 (958)
+..+
T Consensus 227 ~~~~ 230 (235)
T 3l6e_A 227 NEGH 230 (235)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 8764
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-39 Score=343.25 Aligned_cols=241 Identities=35% Similarity=0.570 Sum_probs=213.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|++++++++++++++.+.+|
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 83 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALG 83 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999999999999998888876667788999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|.++ + |+||++||.++..+.++...|++||+|
T Consensus 84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~-g~iv~isS~~~~~~~~~~~~Y~asK~a 161 (247)
T 2jah_A 84 GLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRS-K-GTVVQMSSIAGRVNVRNAAVYQATKFG 161 (247)
T ss_dssp CCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T-CEEEEECCGGGTCCCTTCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-C-CEEEEEccHHhcCCCCCCcHHHHHHHH
Confidence 99999999999877788899999999999999999999999999999744 3 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCC--CCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV--LTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~--~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+.+|+++|+.|++++||+||+|+||+|+|+|............+.... .+. .+|+|+|+.++|+++++....+.++.
T Consensus 162 ~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~-~~~~~~~pedvA~~v~~l~s~~~~~~~~~i~ 240 (247)
T 2jah_A 162 VNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRI-SQIRKLQAQDIAEAVRYAVTAPHHATVHEIF 240 (247)
T ss_dssp HHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHHHT-TTSCCBCHHHHHHHHHHHHHSCTTEEEEEEE
T ss_pred HHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchhhHHHHHhcc-cccCCCCHHHHHHHHHHHhCCCccCccceEE
Confidence 999999999999999999999999999999865432221111111111 233 89999999999999988888888999
Q ss_pred ecCCCC
Q psy4557 951 IEPPLA 956 (958)
Q Consensus 951 i~p~~~ 956 (958)
|+|..+
T Consensus 241 i~~~~~ 246 (247)
T 2jah_A 241 IRPTDQ 246 (247)
T ss_dssp EEETTC
T ss_pred ecCCCC
Confidence 999875
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=351.67 Aligned_cols=241 Identities=33% Similarity=0.562 Sum_probs=210.7
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+...+.+|++|||||++|||+++|++|+++|++|++++|+.++++++. ...+.++.+|++|.++++++++++.+
T Consensus 10 m~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (266)
T 3p19_A 10 MGRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN------LPNTLCAQVDVTDKYTFDTAITRAEK 83 (266)
T ss_dssp -----CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC------CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh------cCCceEEEecCCCHHHHHHHHHHHHH
Confidence 445688999999999999999999999999999999999987665432 23678899999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
.+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+. +.|+|||+||.++..+.++...|++|
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~IV~isS~~~~~~~~~~~~Y~as 162 (266)
T 3p19_A 84 IYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKAR-NCGTIINISSIAGKKTFPDHAAYCGT 162 (266)
T ss_dssp HHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCCTTCHHHHHH
T ss_pred HCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcChhhCCCCCCCchHHHH
Confidence 99999999999999888888999999999999999999999999999999744 46999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhcc--ccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDI--SKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~--~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
|+|+++|+++|+.|++++||+||+|+||+|+|+|............+.. ....+..+|+|+|++++|+++++....+.
T Consensus 163 K~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~av~~l~~~~~~~~~~ 242 (266)
T 3p19_A 163 KFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGGVLAADDVARAVLFAYQQPQNVCIR 242 (266)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCTTEEEE
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhcccccCCCCHHHHHHHHHHHHcCCCCccce
Confidence 9999999999999999999999999999999999765443322221111 13346789999999999999999999999
Q ss_pred ceEecCCCCC
Q psy4557 948 SILIEPPLAS 957 (958)
Q Consensus 948 ~~~i~p~~~~ 957 (958)
++.|.|+.++
T Consensus 243 ~i~i~p~~~~ 252 (266)
T 3p19_A 243 EIALAPTKQQ 252 (266)
T ss_dssp EEEEEETTCC
T ss_pred eeEEecCCCC
Confidence 9999999876
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=353.50 Aligned_cols=242 Identities=23% Similarity=0.384 Sum_probs=209.6
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC------------hhhHHHHHHHhhcCCCcEEEEEecCCCH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR------------IDRLENLKTSLQNAPGSIIVKKLDVTIE 777 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~------------~~~l~~~~~~l~~~~~~~~~~~~Dvs~~ 777 (958)
+..+++||++|||||++|||+++|++|+++|++|++++|+ .++++++.+++...+.++.++++|++++
T Consensus 22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 101 (299)
T 3t7c_A 22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDF 101 (299)
T ss_dssp CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred cccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence 4467899999999999999999999999999999999987 6778888888877778899999999999
Q ss_pred HHHHHHHHHHHHHcCCccEEEEccccCCCcc-ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccC
Q psy4557 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTL-MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAG 856 (958)
Q Consensus 778 ~~v~~~~~~~~~~~g~iDilInnAG~~~~~~-~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g 856 (958)
++++++++++.+.+|++|+||||||+..... +.+.+.++|++++++|+.|+++++++++|.|.++++.|+|||+||.++
T Consensus 102 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~ 181 (299)
T 3t7c_A 102 DAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGG 181 (299)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhh
Confidence 9999999999999999999999999986654 888999999999999999999999999999986666799999999999
Q ss_pred cCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC---------hhhhhh------hccccC
Q psy4557 857 VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD---------RDVVDK------YDISKA 921 (958)
Q Consensus 857 ~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~---------~~~~~~------~~~~~~ 921 (958)
..+.++.+.|++||+|+++|+++|+.|++++||+||+|+||+|+|+|...... ...... ......
T Consensus 182 ~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 261 (299)
T 3t7c_A 182 LRGAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLP 261 (299)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHHHSSSS
T ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHHHHhhhhcccC
Confidence 99999999999999999999999999999999999999999999999753100 000000 111111
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 922 VPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 922 ~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
.+..+|+|+|++++|+++ +...+++|..|.
T Consensus 262 ~r~~~pedvA~~v~fL~s-~~a~~itG~~i~ 291 (299)
T 3t7c_A 262 IPYVEPADISNAILFLVS-DDARYITGVSLP 291 (299)
T ss_dssp CSCBCHHHHHHHHHHHHS-GGGTTCCSCEEE
T ss_pred cCCCCHHHHHHHHHHHhC-cccccCcCCEEe
Confidence 467899999999999765 566788887664
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-39 Score=348.35 Aligned_cols=241 Identities=23% Similarity=0.351 Sum_probs=200.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++++|++++++++++++++.+.+|
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 101 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG---DDALCVPTDVTDPDSVRALFTATVEKFG 101 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT---SCCEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999999999998888774 4678899999999999999999999999
Q ss_pred CccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 793 HIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR-RPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 793 ~iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~-~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|.+++ ++|+|||+||.++..+.++.+.|++||
T Consensus 102 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asK 181 (272)
T 4dyv_A 102 RVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATK 181 (272)
T ss_dssp CCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCTTCHHHHHHH
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCCCchHHHHHH
Confidence 99999999999754 6788999999999999999999999999999998554 268999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+|+++|+++|+.|++++||+||+|+||+|+|+|......... .........++.+|+|+|++++|++++|....++++.
T Consensus 182 aa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~-~~~~~~~~~~~~~pedvA~~v~fL~s~~~~~~~~~i~ 260 (272)
T 4dyv_A 182 HAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGVP-QADLSIKVEPVMDVAHVASAVVYMASLPLDANVQFMT 260 (272)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEEEECC-------------------------CHHHHHHHHHHHHHSCTTSCCCEEE
T ss_pred HHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhcccch-hhhhcccccCCCCHHHHHHHHHHHhCCCCcCccceEE
Confidence 999999999999999999999999999999999764322111 1111122345789999999999999999999999999
Q ss_pred ecCCCCC
Q psy4557 951 IEPPLAS 957 (958)
Q Consensus 951 i~p~~~~ 957 (958)
++|+..|
T Consensus 261 i~~~~~~ 267 (272)
T 4dyv_A 261 IMATKMP 267 (272)
T ss_dssp EEEC---
T ss_pred EeccCcc
Confidence 9999876
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=345.55 Aligned_cols=237 Identities=22% Similarity=0.325 Sum_probs=208.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++|+++++++++++.+.+
T Consensus 2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (247)
T 3rwb_A 2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---GKKARAIAADISDPGSVKALFAEIQALT 78 (247)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---CTTEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 4689999999999999999999999999999999999999998888776 4578899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|.+.+..|+||++||.++..+.++.+.|++||+
T Consensus 79 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa 158 (247)
T 3rwb_A 79 GGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKG 158 (247)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCTTCHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCCCchhhHHHHH
Confidence 99999999999988888899999999999999999999999999999986554699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhcc-ccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDI-SKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~-~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+.+|+++|+.|++++|||||+|+||+|+|++............... ....+..+|+|+|+.++|+++ +...+++|..
T Consensus 159 a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~pedva~~v~~L~s-~~~~~itG~~ 237 (247)
T 3rwb_A 159 GVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEMLQAMKGKGQPEHIADVVSFLAS-DDARWITGQT 237 (247)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHHSSSCSCBCHHHHHHHHHHHHS-GGGTTCCSCE
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcccccCCCcCHHHHHHHHHHHhC-ccccCCCCCE
Confidence 99999999999999999999999999999998654322211111111 233467899999999999765 5566888876
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
|.
T Consensus 238 i~ 239 (247)
T 3rwb_A 238 LN 239 (247)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=344.57 Aligned_cols=240 Identities=23% Similarity=0.383 Sum_probs=209.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++++|++++++++++++++.+.+
T Consensus 2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (257)
T 3imf_A 2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF 81 (257)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999999999999999988777789999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|.+++..|+|||+||.++..+.++...|++||+
T Consensus 82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa 161 (257)
T 3imf_A 82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKA 161 (257)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCTTCHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCCCcHHHHHHHH
Confidence 99999999999988888899999999999999999999999999999965556799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCcEEEEEECCcccCCCCCCCC--Chhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 872 FIEGISGALRQEVS-DRNIKVTCIQAGDVKTELLSHST--DRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 872 a~~~l~~~la~el~-~~gIrv~~v~PG~v~T~~~~~~~--~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
|+++|+|+|+.|++ ++|||||+|+||+|+|++..... .+...... ...+..++.+|+|+|+.++|+++ +...+++
T Consensus 162 a~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s-~~~~~it 240 (257)
T 3imf_A 162 GVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPEEIAGLAYYLCS-DEAAYIN 240 (257)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTSTTCSCBCHHHHHHHHHHHHS-GGGTTCC
T ss_pred HHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-chhcCcc
Confidence 99999999999997 77999999999999999754321 11111111 11233467899999999999765 5556777
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..+.
T Consensus 241 G~~i~ 245 (257)
T 3imf_A 241 GTCMT 245 (257)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 76653
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=347.42 Aligned_cols=241 Identities=24% Similarity=0.354 Sum_probs=208.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-------------ChhhHHHHHHHhhcCCCcEEEEEecCCCH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-------------RIDRLENLKTSLQNAPGSIIVKKLDVTIE 777 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-------------~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~ 777 (958)
..+++||++|||||++|||+++|++|+++|++|++++| +.+.++++.+++...+.++.++.+|++|+
T Consensus 6 ~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 85 (277)
T 3tsc_A 6 AGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDF 85 (277)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred ccccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 35789999999999999999999999999999999998 67778888888877778899999999999
Q ss_pred HHHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc
Q psy4557 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV 857 (958)
Q Consensus 778 ~~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~ 857 (958)
++++++++++.+.+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+++..|+|||+||.++.
T Consensus 86 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~ 165 (277)
T 3tsc_A 86 DRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGM 165 (277)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhC
Confidence 99999999999999999999999999888888899999999999999999999999999999865556999999999999
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----------ChhhhhhhccccCCCCCCH
Q psy4557 858 RPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----------DRDVVDKYDISKAVPVLTT 927 (958)
Q Consensus 858 ~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----------~~~~~~~~~~~~~~~~~~p 927 (958)
.+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|..... .+............+..+|
T Consensus 166 ~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~p 245 (277)
T 3tsc_A 166 KMQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEP 245 (277)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHHHHHHHHHHHTCGGGTTTTCCSSSCSCBCH
T ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchhhhhhhhcccccHHHHHHhhhccCCCCCCH
Confidence 999999999999999999999999999999999999999999999864310 0111111111112357899
Q ss_pred HHHHHHHHHHhcCCCCccccceEec
Q psy4557 928 KEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 928 ~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+|+|++++|+++ +...+++|..|.
T Consensus 246 edvA~~v~~L~s-~~~~~itG~~i~ 269 (277)
T 3tsc_A 246 EDIADTVCWLAS-DESRKVTAAQIP 269 (277)
T ss_dssp HHHHHHHHHHHS-GGGTTCCSCEEE
T ss_pred HHHHHHHHHHhC-ccccCCcCCEEe
Confidence 999999999765 556678887654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=345.08 Aligned_cols=238 Identities=23% Similarity=0.334 Sum_probs=210.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|++|+++++++++++.+.+
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999999999999999988777889999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++ +.+.++|++++++|+.|+++++++++|+|.++ +.|+|||+||.++..+.++.+.|++||+
T Consensus 88 g~id~lv~nAg~~~~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asKa 165 (256)
T 3gaf_A 88 GKITVLVNNAGGGGPKPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNISSMAGENTNVRMASYGSSKA 165 (256)
T ss_dssp SCCCEEEECCCCCCCCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTCCCTTCHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCC-CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHHHcCCCCCchHHHHHHH
Confidence 999999999999877777 88999999999999999999999999999854 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+++|+++|+.|++++|||||+|+||+|+|+|......++...... .....++.+|+|+|++++|+++ +...+++|..
T Consensus 166 a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~L~s-~~~~~itG~~ 244 (256)
T 3gaf_A 166 AVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQDIANAALFLCS-PAAAWISGQV 244 (256)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHS-GGGTTCCSCE
T ss_pred HHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC-CcccCccCCE
Confidence 9999999999999999999999999999999865332222222221 2233467899999999999765 5667788776
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
+.
T Consensus 245 i~ 246 (256)
T 3gaf_A 245 LT 246 (256)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-39 Score=343.07 Aligned_cols=235 Identities=27% Similarity=0.421 Sum_probs=206.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.. ....+++|++|+++++++++++.+.+|
T Consensus 6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (248)
T 3op4_A 6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD---NGKGMALNVTNPESIEAVLKAITDEFG 82 (248)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG---GEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---cceEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999999999999988887753 467889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|.++ +.|+|||+||.++..+.++.+.|++||+|
T Consensus 83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK~a 161 (248)
T 3op4_A 83 GVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK-RQGRIINVGSVVGTMGNAGQANYAAAKAG 161 (248)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHHCCTTCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhhcCCCCCChHHHHHHHH
Confidence 99999999999888888999999999999999999999999999999754 46999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+++|+|+|+.|++++|||||+|+||+|+|+|...................++.+|+|+|++++|+++ +...+++|..+.
T Consensus 162 ~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s-~~~~~itG~~i~ 240 (248)
T 3op4_A 162 VIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLAS-PEAAYITGETLH 240 (248)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHS-GGGTTCCSCEEE
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-CccCCccCcEEE
Confidence 9999999999999999999999999999999765432211111122234467899999999999765 566778877654
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=346.79 Aligned_cols=240 Identities=21% Similarity=0.404 Sum_probs=208.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-------------ChhhHHHHHHHhhcCCCcEEEEEecCCCHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-------------RIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-------------~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~ 778 (958)
.+++||+++||||++|||+++|++|+++|++|++++| +.++++++.+++...+.++.++++|+++++
T Consensus 11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 90 (280)
T 3pgx_A 11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDA 90 (280)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 5689999999999999999999999999999999998 678888888888877888999999999999
Q ss_pred HHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC
Q psy4557 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR 858 (958)
Q Consensus 779 ~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~ 858 (958)
+++++++++.+.+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|++++.+|+|||+||.++..
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 170 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK 170 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc
Confidence 99999999999999999999999998888889999999999999999999999999999998655479999999999999
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-------Chhhhhhh--ccccCCCCCCHHH
Q psy4557 859 PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-------DRDVVDKY--DISKAVPVLTTKE 929 (958)
Q Consensus 859 ~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-------~~~~~~~~--~~~~~~~~~~p~~ 929 (958)
+.++.+.|++||+|+++|+++|+.|++++||+||+|+||+|+|+|..... .+.....+ ......++.+|+|
T Consensus 171 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~d 250 (280)
T 3pgx_A 171 ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMTADE 250 (280)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHHHHHHHHCGGGGGGSCCBTTBCSSCBCHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhhhhhhhcCchhhhhhhhcccCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999865310 00000110 0011125789999
Q ss_pred HHHHHHHHhcCCCCccccceEec
Q psy4557 930 ISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 930 ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+|++++|+++ +...+++|..+.
T Consensus 251 vA~~v~~L~s-~~~~~itG~~i~ 272 (280)
T 3pgx_A 251 VADVVAWLAG-DGSGTLTGTQIP 272 (280)
T ss_dssp HHHHHHHHHS-GGGTTCSSCEEE
T ss_pred HHHHHHHHhC-ccccCCCCCEEE
Confidence 9999999765 556678776653
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=345.92 Aligned_cols=241 Identities=24% Similarity=0.383 Sum_probs=208.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC----------------hhhHHHHHHHhhcCCCcEEEEEecC
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR----------------IDRLENLKTSLQNAPGSIIVKKLDV 774 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~----------------~~~l~~~~~~l~~~~~~~~~~~~Dv 774 (958)
..+++||+++||||++|||+++|++|+++|++|++++|+ .++++++.+++...+.++.++++|+
T Consensus 6 ~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 85 (286)
T 3uve_A 6 TGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDV 85 (286)
T ss_dssp CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred CcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCC
Confidence 357899999999999999999999999999999999887 6788888888877778899999999
Q ss_pred CCHHHHHHHHHHHHHHcCCccEEEEccccCCCcc-ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecC
Q psy4557 775 TIENDVKKVVREVLAELGHIDILVNNAGVMYFTL-MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISS 853 (958)
Q Consensus 775 s~~~~v~~~~~~~~~~~g~iDilInnAG~~~~~~-~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS 853 (958)
+++++++++++++.+.+|++|+||||||+..... +.+.+.++|++++++|+.|+++++++++|+|.+++.+|+|||+||
T Consensus 86 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS 165 (286)
T 3uve_A 86 RDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSS 165 (286)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence 9999999999999999999999999999976654 888999999999999999999999999999986555799999999
Q ss_pred ccCcCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC------------Chhhhhh---hcc
Q psy4557 854 NAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST------------DRDVVDK---YDI 918 (958)
Q Consensus 854 ~~g~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~------------~~~~~~~---~~~ 918 (958)
.++..+.++...|++||+|+++|+++|+.|++++|||||+|+||+|+|+|..... ....... ...
T Consensus 166 ~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (286)
T 3uve_A 166 VGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFH 245 (286)
T ss_dssp GGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHTTC
T ss_pred hhhccCCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccchhhHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999975310 0000000 111
Q ss_pred ccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 919 SKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 919 ~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
....++.+|+|+|++++|+++ +...+++|..|.
T Consensus 246 ~~p~r~~~p~dvA~~v~fL~s-~~a~~itG~~i~ 278 (286)
T 3uve_A 246 TLPIPWVEPIDISNAVLFFAS-DEARYITGVTLP 278 (286)
T ss_dssp SSSCSCBCHHHHHHHHHHHHS-GGGTTCCSCEEE
T ss_pred ccCCCcCCHHHHHHHHHHHcC-ccccCCcCCEEe
Confidence 111567899999999999765 666788887664
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=345.27 Aligned_cols=238 Identities=25% Similarity=0.358 Sum_probs=206.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++++|++|+++++++++++.+.+|
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (283)
T 3v8b_A 25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFG 104 (283)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999987778899999999999999999999999999
Q ss_pred CccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC--CCCCChhhhHH
Q psy4557 793 HIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR--PFAGLAVYTGT 869 (958)
Q Consensus 793 ~iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~--~~~~~~~Y~as 869 (958)
++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|+|.++ +.|+|||+||.++.. +.++...|++|
T Consensus 105 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~~~~~~~~~~~~~~Y~as 183 (283)
T 3v8b_A 105 HLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR-GGGAIVVVSSINGTRTFTTPGATAYTAT 183 (283)
T ss_dssp CCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTTBCCSTTCHHHHHH
T ss_pred CCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCceEEEEcChhhccCCCCCCchHHHHH
Confidence 99999999998653 778899999999999999999999999999999744 469999999999987 77899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhh------hhhc-cccC--CCCCCHHHHHHHHHHHhcC
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVV------DKYD-ISKA--VPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~------~~~~-~~~~--~~~~~p~~ia~~i~~~l~~ 940 (958)
|+|+++|+++|+.|++++||+||+|+||+|+|+|.......... .... .... .+..+|+|+|++++|+++
T Consensus 184 Kaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~pedvA~~v~fL~s- 262 (283)
T 3v8b_A 184 KAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVS- 262 (283)
T ss_dssp HHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHSCCCBCTTCSCGGGTTCCBCHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhhhhhhhhhhcCccccCCCCCHHHHHHHHHHHcC-
Confidence 99999999999999999999999999999999997653211111 0000 0111 466899999999999665
Q ss_pred CCCccccceEec
Q psy4557 941 PSHSAVNSILIE 952 (958)
Q Consensus 941 ~~~~~i~~~~i~ 952 (958)
+...+++|..|.
T Consensus 263 ~~a~~itG~~i~ 274 (283)
T 3v8b_A 263 ERARHVTGSPVW 274 (283)
T ss_dssp GGGTTCCSCEEE
T ss_pred ccccCCcCCEEE
Confidence 666788887653
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=344.89 Aligned_cols=237 Identities=22% Similarity=0.327 Sum_probs=208.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC-CcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP-GSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+ .++.++++|++++++++++++++.+.+
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF 86 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999998887665 578899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-CCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-RPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-~~~~~~~~Y~asK 870 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+|||+||.++. .+.++...|++||
T Consensus 87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~~~~~~~~~~Y~asK 165 (262)
T 3pk0_A 87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIAS-GSGRVVLTSSITGPITGYPGWSHYGATK 165 (262)
T ss_dssp SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-SSCEEEEECCSBTTTBCCTTCHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEechhhccCCCCCChhhHHHH
Confidence 999999999999888888999999999999999999999999999999754 46999999999996 7889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
+|+++|+++|+.|++++|||||+|+||+|.|++..... ++..... ......++.+|+|+|+.++|+++ +...+++|.
T Consensus 166 ~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~-~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s-~~~~~itG~ 243 (262)
T 3pk0_A 166 AAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENG-EEYIASMARSIPAGALGTPEDIGHLAAFLAT-KEAGYITGQ 243 (262)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTC-HHHHHHHHTTSTTSSCBCHHHHHHHHHHHHS-GGGTTCCSC
T ss_pred HHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccC-HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccCCcCC
Confidence 99999999999999999999999999999999865432 2222221 12233467899999999999765 556678876
Q ss_pred Eec
Q psy4557 950 LIE 952 (958)
Q Consensus 950 ~i~ 952 (958)
.+.
T Consensus 244 ~i~ 246 (262)
T 3pk0_A 244 AIA 246 (262)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=345.32 Aligned_cols=239 Identities=23% Similarity=0.298 Sum_probs=208.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-CCC-cEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-APG-SIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-~~~-~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.. .++ ++.++++|++++++++++++++.+
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACER 83 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999998888865 333 488999999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
.+|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|+|. .++.|+||++||.++..+.++...|++|
T Consensus 84 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~-~~~~g~iv~isS~~~~~~~~~~~~Y~as 162 (265)
T 3lf2_A 84 TLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLE-SRADAAIVCVNSLLASQPEPHMVATSAA 162 (265)
T ss_dssp HHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSTTEEEEEEEEGGGTSCCTTBHHHHHH
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCeEEEEECCcccCCCCCCchhhHHH
Confidence 999999999999998888889999999999999999999999999999997 4457999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC--------Chhhhh-hhcc---ccCCCCCCHHHHHHHHHHH
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST--------DRDVVD-KYDI---SKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~--------~~~~~~-~~~~---~~~~~~~~p~~ia~~i~~~ 937 (958)
|+|+++|+|+|+.|++++|||||+|+||+|+|+|..... ...... .... .+..+..+|+|+|++++|+
T Consensus 163 Kaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL 242 (265)
T 3lf2_A 163 RAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFL 242 (265)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccCCCcCCCcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999854311 111111 1111 2335678999999999997
Q ss_pred hcCCCCccccceEec
Q psy4557 938 LLQPSHSAVNSILIE 952 (958)
Q Consensus 938 l~~~~~~~i~~~~i~ 952 (958)
++ +...+++|..+.
T Consensus 243 ~s-~~~~~itG~~i~ 256 (265)
T 3lf2_A 243 AS-PLSAYTTGSHID 256 (265)
T ss_dssp HS-GGGTTCCSEEEE
T ss_pred hC-chhcCcCCCEEE
Confidence 64 666788887664
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=340.57 Aligned_cols=237 Identities=23% Similarity=0.343 Sum_probs=209.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+||++|||||++|||+++|++|+++|++|+++ +|+.+.++++.+++...+.++.++++|++++++++++++++.+.+|
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG 81 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999997 8999999999999887778899999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|.+ ++.|+|||+||.++..+.++.+.|++||+|
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~-~~~g~iv~isS~~~~~~~~~~~~Y~asKaa 160 (258)
T 3oid_A 82 RLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEK-NGGGHIVSISSLGSIRYLENYTTVGVSKAA 160 (258)
T ss_dssp CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-TTCEEEEEEEEGGGTSBCTTCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCcEEEEECchhhCCCCCCcHHHHHHHHH
Confidence 9999999999988888899999999999999999999999999999984 456999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh-hhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV-VDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~-~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+++|+++|+.|++++|||||+|+||+|+|+|......... .... ......++.+|+|+|++++|+++ +...+++|..
T Consensus 161 ~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s-~~~~~itG~~ 239 (258)
T 3oid_A 161 LEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVS-SKADMIRGQT 239 (258)
T ss_dssp HHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCTTSSCBCHHHHHHHHHHHTS-STTTTCCSCE
T ss_pred HHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-cccCCccCCE
Confidence 9999999999999999999999999999999765433221 1111 12234567899999999999765 5556787766
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
+.
T Consensus 240 i~ 241 (258)
T 3oid_A 240 II 241 (258)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-39 Score=347.00 Aligned_cols=240 Identities=20% Similarity=0.284 Sum_probs=210.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++++|++|+++++++++++.+.
T Consensus 16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 95 (266)
T 4egf_A 16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEA 95 (266)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999999998888765 4667999999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+++.+|+||++||.++..+.++...|++||
T Consensus 96 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK 175 (266)
T 4egf_A 96 FGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSK 175 (266)
T ss_dssp HTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCCCChHHHHHH
Confidence 99999999999998888889999999999999999999999999999998655579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+|+++|+++|+.|++++|||||+|+||+|.|+|..... ........ ......++.+|+|+|++++|+++ +...+++|
T Consensus 176 ~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s-~~~~~itG 254 (266)
T 4egf_A 176 AGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPLGRFAVPHEVSDAVVWLAS-DAASMING 254 (266)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHS-GGGTTCCS
T ss_pred HHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-chhcCccC
Confidence 99999999999999999999999999999999854321 11111111 11233467899999999999665 55667888
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..+.
T Consensus 255 ~~i~ 258 (266)
T 4egf_A 255 VDIP 258 (266)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 6653
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=348.93 Aligned_cols=240 Identities=27% Similarity=0.414 Sum_probs=210.4
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+...++||++|||||++|||+++|++|+++|++|++++|+.+.++++.+++...+.++..+.+|++|.++++++++++.+
T Consensus 22 m~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (270)
T 3ftp_A 22 MDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLK 101 (270)
T ss_dssp -CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999888877667788899999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
.+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+|||+||.++..+.++.+.|++|
T Consensus 102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~as 180 (270)
T 3ftp_A 102 EFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNITSVVGSAGNPGQVNYAAA 180 (270)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHHCCTTBHHHHHH
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhhCCCCCCchhHHHH
Confidence 99999999999999888888899999999999999999999999999999754 46999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
|+|+++|+++|+.|++++||+||+|+||+|+|+|...... ...... ......++.+|+|+|++++|+++ +...+++|
T Consensus 181 Kaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~p~~r~~~pedvA~~v~~L~s-~~~~~itG 258 (270)
T 3ftp_A 181 KAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLPQ-EQQTALKTQIPLGRLGSPEDIAHAVAFLAS-PQAGYITG 258 (270)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSCH-HHHHHHHTTCTTCSCBCHHHHHHHHHHHHS-GGGTTCCS
T ss_pred HHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhcCH-HHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-CCcCCccC
Confidence 9999999999999999999999999999999998654322 111111 12233457899999999999764 55667887
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..+.
T Consensus 259 ~~i~ 262 (270)
T 3ftp_A 259 TTLH 262 (270)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 6654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-38 Score=339.42 Aligned_cols=236 Identities=31% Similarity=0.518 Sum_probs=207.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999999988777889999999999999999999999999
Q ss_pred CCccEEEEcccc-CCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~-~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
|++|+||||||+ ....++.+.+.++|++++++|+.|++.+++.++|.|.+. +.|+||++||.++..+.++.+.|++||
T Consensus 105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK 183 (262)
T 3rkr_A 105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISSLAGKNPVADGAAYTASK 183 (262)
T ss_dssp SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCEEEEECSSCSSCCCTTCHHHHHHH
T ss_pred CCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCceEEEEechhhcCCCCCCchHHHHH
Confidence 999999999998 455678889999999999999999999999999999754 468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+|+++|+++++.|++++||+||+|+||+|+|+|....... ....+..+|+|+|+.++|+++++....+.++.
T Consensus 184 aa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--------~~~~~~~~p~dvA~~v~~l~s~~~~~~~g~~~ 255 (262)
T 3rkr_A 184 WGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLSAK--------KSALGAIEPDDIADVVALLATQADQSFISEVL 255 (262)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------------CCCHHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccccccc--------cccccCCCHHHHHHHHHHHhcCccccccCcEE
Confidence 9999999999999999999999999999999986543211 12235679999999999999999999999999
Q ss_pred ecCCCC
Q psy4557 951 IEPPLA 956 (958)
Q Consensus 951 i~p~~~ 956 (958)
|.|+.+
T Consensus 256 i~p~~~ 261 (262)
T 3rkr_A 256 VRPTLK 261 (262)
T ss_dssp EECCCC
T ss_pred eccccC
Confidence 999876
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=345.38 Aligned_cols=238 Identities=26% Similarity=0.437 Sum_probs=211.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
..+++||++|||||++|||+++|++|+++|++|++++| +.+.++++.+++...+.++.++++|++|+++++++++++.+
T Consensus 23 ~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~ 102 (269)
T 4dmm_A 23 ALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIE 102 (269)
T ss_dssp -CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999988 67778888888877777899999999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
.+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.++ +.|+|||+||.++..+.++...|++|
T Consensus 103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~as 181 (269)
T 4dmm_A 103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQ-RSGRIINIASVVGEMGNPGQANYSAA 181 (269)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCHHHHHCCTTCHHHHHH
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECchhhcCCCCCchhHHHH
Confidence 99999999999999888888899999999999999999999999999999754 46999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+|+++|+++|+.|++++||+||+|+||+|+|+|...... ..........++.+|+|+|++++|++++|...+++|.
T Consensus 182 K~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~itG~ 258 (269)
T 4dmm_A 182 KAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSELAA---EKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQ 258 (269)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCHHHH---HHHGGGCTTSSCBCHHHHHHHHHHHHHCGGGGGCCSC
T ss_pred HHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccccccH---HHHHhcCCCCCCCCHHHHHHHHHHHhCCcccCCCcCC
Confidence 9999999999999999999999999999999998643211 1111222334678999999999999888788888887
Q ss_pred Eec
Q psy4557 950 LIE 952 (958)
Q Consensus 950 ~i~ 952 (958)
.+.
T Consensus 259 ~i~ 261 (269)
T 4dmm_A 259 VIN 261 (269)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=343.96 Aligned_cols=239 Identities=23% Similarity=0.324 Sum_probs=209.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++++|++++++++++++++.+.
T Consensus 27 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 106 (276)
T 3r1i_A 27 LFDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGE 106 (276)
T ss_dssp GGCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999877778889999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC--CCChhhhH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF--AGLAVYTG 868 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~--~~~~~Y~a 868 (958)
+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+++.+|+||++||.++..+. ++.+.|++
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~a 186 (276)
T 3r1i_A 107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCT 186 (276)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCSSCCHHHHH
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCCCCcchHHH
Confidence 9999999999999888888899999999999999999999999999999865556999999999988654 46789999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
||+|+++|+++|+.|++++|||||+|+||+|+|+|...... ....+ ......++.+|+|+|++++|+++ +...+++
T Consensus 187 sKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~--~~~~~~~~~p~~r~~~pedvA~~v~fL~s-~~~~~it 263 (276)
T 3r1i_A 187 SKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPLAD--YHALWEPKIPLGRMGRPEELTGLYLYLAS-AASSYMT 263 (276)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGGGG--GHHHHGGGSTTSSCBCGGGSHHHHHHHHS-GGGTTCC
T ss_pred HHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccchH--HHHHHHhcCCCCCCcCHHHHHHHHHHHcC-ccccCcc
Confidence 99999999999999999999999999999999999754321 11111 11233467899999999999765 5667788
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..+.
T Consensus 264 G~~i~ 268 (276)
T 3r1i_A 264 GSDIV 268 (276)
T ss_dssp SCEEE
T ss_pred CcEEE
Confidence 87664
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=344.88 Aligned_cols=235 Identities=26% Similarity=0.387 Sum_probs=195.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++|+++++++++++.+.+
T Consensus 23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (266)
T 3grp_A 23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL---GKDVFVFSANLSDRKSIKQLAEVAEREM 99 (266)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCceEEEEeecCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999999999888887665 4578899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|++. +.|+|||+||.++..+.++...|++||+
T Consensus 100 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~Iv~isS~~~~~~~~~~~~Y~asKa 178 (266)
T 3grp_A 100 EGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRR-RYGRIINITSIVGVVGNPGQTNYCAAKA 178 (266)
T ss_dssp TSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCC-------CHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcEEEEECCHHHcCCCCCchhHHHHHH
Confidence 999999999999887888899999999999999999999999999999744 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+++|+|+|+.|++++|||||+|+||+|.|+|...... ...... ......++.+|+|+|.+++|+++ +...+++|..
T Consensus 179 a~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~-~~~~~~~~~~p~~r~~~~edvA~~v~~L~s-~~~~~itG~~ 256 (266)
T 3grp_A 179 GLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNE-KQKEAIMAMIPMKRMGIGEEIAFATVYLAS-DEAAYLTGQT 256 (266)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTCCH-HHHHHHHTTCTTCSCBCHHHHHHHHHHHHS-GGGTTCCSCE
T ss_pred HHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhccCH-HHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccCccCCE
Confidence 99999999999999999999999999999998765422 222211 22234567899999999999765 5556787765
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
+.
T Consensus 257 i~ 258 (266)
T 3grp_A 257 LH 258 (266)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=337.76 Aligned_cols=236 Identities=26% Similarity=0.432 Sum_probs=207.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+.+|+++||||++|||+++|++|+++|++|++++| +.++++++.+++...+.++.++++|++|.++++++++++.+.+|
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999877 56788888888887778899999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|++++++.++|+|+++ +.|+||++||.++..+.++.+.|++||+|
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~a 160 (246)
T 3osu_A 82 SLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ-RSGAIINLSSVVGAVGNPGQANYVATKAG 160 (246)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHHCCTTCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhhcCCCCCChHHHHHHHH
Confidence 99999999999888888899999999999999999999999999999754 46999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
+++|+++++.|++++||+||+|+||+|.|+|...... ...... ...+..+..+|+|+|++++|+++ +...+++|..+
T Consensus 161 ~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~-~~~~~~~~~~p~~r~~~~~dva~~v~~l~s-~~~~~itG~~i 238 (246)
T 3osu_A 161 VIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSD-ELKEQMLTQIPLARFGQDTDIANTVAFLAS-DKAKYITGQTI 238 (246)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSCH-HHHHHHHTTCTTCSCBCHHHHHHHHHHHTS-GGGTTCCSCEE
T ss_pred HHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccCH-HHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccCCCCCEE
Confidence 9999999999999999999999999999999765432 222222 22233467899999999999665 55667777665
Q ss_pred c
Q psy4557 952 E 952 (958)
Q Consensus 952 ~ 952 (958)
.
T Consensus 239 ~ 239 (246)
T 3osu_A 239 H 239 (246)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=341.87 Aligned_cols=239 Identities=24% Similarity=0.314 Sum_probs=208.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|++++++++++++++.+.+
T Consensus 4 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (280)
T 3tox_A 4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF 83 (280)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999999999999999987777789999999999999999999999999
Q ss_pred CCccEEEEccccC-CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-CCCCCChhhhHH
Q psy4557 792 GHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-RPFAGLAVYTGT 869 (958)
Q Consensus 792 g~iDilInnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-~~~~~~~~Y~as 869 (958)
|++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|.+. +.|+||++||.++. .+.++...|++|
T Consensus 84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~~Y~as 162 (280)
T 3tox_A 84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTSSFVGHTAGFAGVAPYAAS 162 (280)
T ss_dssp SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCSBTTTBCCTTCHHHHHH
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcChhhCcCCCCCchhHHHH
Confidence 9999999999987 45678899999999999999999999999999999854 46999999999998 788999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC---Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST---DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~---~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
|+|+++|+++|+.|++++||+||+|+||+|.|++..... .+....... .....+..+|+|+|++++|+++ +...+
T Consensus 163 Kaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s-~~a~~ 241 (280)
T 3tox_A 163 KAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLAS-DGASF 241 (280)
T ss_dssp HHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTSTTSSCBCHHHHHHHHHHHHS-GGGTT
T ss_pred HHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCccCCCcCHHHHHHHHHHHhC-ccccC
Confidence 999999999999999999999999999999999865411 122111111 1223467899999999999765 55567
Q ss_pred ccceEec
Q psy4557 946 VNSILIE 952 (958)
Q Consensus 946 i~~~~i~ 952 (958)
++|..+.
T Consensus 242 itG~~i~ 248 (280)
T 3tox_A 242 VTGAALL 248 (280)
T ss_dssp CCSCEEE
T ss_pred CcCcEEE
Confidence 8776654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=339.95 Aligned_cols=231 Identities=23% Similarity=0.357 Sum_probs=199.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--C-CcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--P-GSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~-~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++... + .++.++++|+++.++++++++++.
T Consensus 3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
T 3nyw_A 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
T ss_dssp --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999988887543 2 568889999999999999999999
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
+.+|++|+||||||+....++ +.+.++|++++++|+.|++.++++++|.|.++ +.|+||++||.++..+.+..+.|++
T Consensus 83 ~~~g~iD~lvnnAg~~~~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~a 160 (250)
T 3nyw_A 83 QKYGAVDILVNAAAMFMDGSL-SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ-KNGYIFNVASRAAKYGFADGGIYGS 160 (250)
T ss_dssp HHHCCEEEEEECCCCCCCCCC-SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC-------CCTTHHHH
T ss_pred HhcCCCCEEEECCCcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEEccHHhcCCCCCCcchHH
Confidence 999999999999999877777 77899999999999999999999999999744 4699999999999997777999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
||+|+.+|+++|+.|++++|||||+|+||+|+|+|....... ....++.+|+|+|+.++|+++++...++++
T Consensus 161 sKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~--------~~~~~~~~p~dva~~v~~l~s~~~~~~~~~ 232 (250)
T 3nyw_A 161 TKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAGTP--------FKDEEMIQPDDLLNTIRCLLNLSENVCIKD 232 (250)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHTTCC--------SCGGGSBCHHHHHHHHHHHHTSCTTEECCE
T ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCchhhhcCCC--------cccccCCCHHHHHHHHHHHHcCCCceEeeE
Confidence 999999999999999999999999999999999985432111 112346899999999999999999999999
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
+.|.
T Consensus 233 ~~i~ 236 (250)
T 3nyw_A 233 IVFE 236 (250)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=340.66 Aligned_cols=236 Identities=25% Similarity=0.397 Sum_probs=199.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++||++|||||++|||+++|++|+++|++|+++ .|+.+.++++.+++...+.++.++++|++++++++++++++.+.+
T Consensus 24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999998 556778888888888777889999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+ +|+|||+||.++..+.++.+.|++||+
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~---~g~iv~isS~~~~~~~~~~~~Y~asKa 180 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRV---GGRIINMSTSQVGLLHPSYGIYAAAKA 180 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEECCTHHHHCCTTCHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCeEEEEeChhhccCCCCchHHHHHHH
Confidence 99999999999988888899999999999999999999999999999952 489999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+++|+++|+.|++++|||||+|+||+|+|+|.......+....+ ......+..+|+|+|++++|+++ +...+++|..
T Consensus 181 a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s-~~~~~itG~~ 259 (267)
T 3u5t_A 181 GVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAKLAPLERLGTPQDIAGAVAFLAG-PDGAWVNGQV 259 (267)
T ss_dssp HHHHHHHHHHHHTTTSCCEEEEEEECCBC-----------CHHHHHTSSTTCSCBCHHHHHHHHHHHHS-TTTTTCCSEE
T ss_pred HHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccCccCCE
Confidence 999999999999999999999999999999997543222222222 12233467899999999999765 6667888887
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
|.
T Consensus 260 i~ 261 (267)
T 3u5t_A 260 LR 261 (267)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=344.78 Aligned_cols=239 Identities=22% Similarity=0.271 Sum_probs=210.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++++|++++++++++++++.+.+
T Consensus 22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (271)
T 4ibo_A 22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQG 101 (271)
T ss_dssp GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999999999999999999999999999998777889999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+|||+||.++..+.++...|++||+
T Consensus 102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iV~isS~~~~~~~~~~~~Y~asKa 180 (271)
T 4ibo_A 102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPR-GYGKIVNIGSLTSELARATVAPYTVAKG 180 (271)
T ss_dssp CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSBCTTCHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEccHHhCCCCCCchhHHHHHH
Confidence 999999999999888888999999999999999999999999999999854 4599999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+++|+++|+.|++++|||||+|+||+|.|+|..... .+...... ......++.+|+|+|.+++|+++ +...+++|.
T Consensus 181 a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L~s-~~~~~itG~ 259 (271)
T 4ibo_A 181 GIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTAVFLSA-SASDYVNGQ 259 (271)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHSTTCSCBCGGGGHHHHHHHHS-GGGTTCCSC
T ss_pred HHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccCCCCc
Confidence 9999999999999999999999999999999864321 11111111 11234567899999999999765 556678886
Q ss_pred Eec
Q psy4557 950 LIE 952 (958)
Q Consensus 950 ~i~ 952 (958)
.+.
T Consensus 260 ~i~ 262 (271)
T 4ibo_A 260 IIY 262 (271)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-39 Score=350.45 Aligned_cols=243 Identities=25% Similarity=0.440 Sum_probs=206.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCC---eEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGA---KVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga---~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
.+++||++|||||++|||+++|++|+++|+ +|++++|+.++++++.+++... +.++.++++|++|++++++++++
T Consensus 29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 468999999999999999999999999998 9999999999999998888653 46788999999999999999999
Q ss_pred HHHHcCCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh
Q psy4557 787 VLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 787 ~~~~~g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~ 865 (958)
+.+.+|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+|||+||.++..+.++.+.
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~~~~~~~~~~~~ 187 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK-NSGDIVNLGSIAGRDAYPTGSI 187 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCCTTCHH
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEECChhhcCCCCCCch
Confidence 9999999999999999875 5678899999999999999999999999999999744 4699999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
|++||+|+++|+++|+.|++++||+||+|+||+|+|+|.....................++|+|+|++++|+++++....
T Consensus 188 Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~pedvA~~v~~l~s~~~~~i 267 (287)
T 3rku_A 188 YCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATSRKQNTV 267 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHHTTSCCEEHHHHHHHHHHHHTSCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHHhhcccCCCCHHHHHHHHHHHhCCCCCeE
Confidence 99999999999999999999999999999999999998532111111011111112234589999999999887766555
Q ss_pred ccceEecCCC
Q psy4557 946 VNSILIEPPL 955 (958)
Q Consensus 946 i~~~~i~p~~ 955 (958)
+.+.++-|..
T Consensus 268 ~g~~i~v~~g 277 (287)
T 3rku_A 268 IADTLIFPTN 277 (287)
T ss_dssp EEEEEEEETT
T ss_pred ecceEEeeCC
Confidence 5555555543
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=346.19 Aligned_cols=238 Identities=22% Similarity=0.325 Sum_probs=208.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC-CcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP-GSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++...+ .++.++++|++|+++++++++++.+.
T Consensus 37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 116 (293)
T 3rih_A 37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDA 116 (293)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999887665 57889999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-CCCCCChhhhHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-RPFAGLAVYTGT 869 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-~~~~~~~~Y~as 869 (958)
+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+. +.|+|||+||.++. .+.++...|++|
T Consensus 117 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iV~isS~~~~~~~~~~~~~Y~as 195 (293)
T 3rih_A 117 FGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTAS-GRGRVILTSSITGPVTGYPGWSHYGAS 195 (293)
T ss_dssp HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH-SSCEEEEECCSBTTTBBCTTCHHHHHH
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEeChhhccCCCCCCHHHHHH
Confidence 9999999999999888888999999999999999999999999999999754 46999999999996 888999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
|+|+++|+++|+.|++++||+||+|+||+|.|++..... .+..... ......++.+|+|+|..++|+++ +...+++|
T Consensus 196 Kaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~-~~~~~~~~~~~p~~r~~~p~dvA~~v~fL~s-~~a~~itG 273 (293)
T 3rih_A 196 KAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMG-EEYISGMARSIPMGMLGSPVDIGHLAAFLAT-DEAGYITG 273 (293)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTC-HHHHHHHHTTSTTSSCBCHHHHHHHHHHHHS-GGGTTCCS
T ss_pred HHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhcc-HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-ccccCCCC
Confidence 999999999999999999999999999999999764332 1221211 12233457799999999999765 55667777
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..|.
T Consensus 274 ~~i~ 277 (293)
T 3rih_A 274 QAIV 277 (293)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6653
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=340.87 Aligned_cols=240 Identities=22% Similarity=0.354 Sum_probs=208.5
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+...++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++++|++|+++++++++++.+
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 5 MGGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp --CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999988788899999999999999999999999
Q ss_pred HcCCccEEEEccccC-CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 790 ELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 790 ~~g~iDilInnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
.+|++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|.++ +|+||++||.++..+.+++..|++
T Consensus 85 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~~~~~~Y~a 162 (264)
T 3ucx_A 85 AYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES--KGAVVNVNSMVVRHSQAKYGAYKM 162 (264)
T ss_dssp HTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH--TCEEEEECCGGGGCCCTTCHHHHH
T ss_pred HcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEECcchhccCCCccHHHHH
Confidence 999999999999985 55778899999999999999999999999999999743 389999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC----------hhhhhhh-ccccCCCCCCHHHHHHHHHHH
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD----------RDVVDKY-DISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~----------~~~~~~~-~~~~~~~~~~p~~ia~~i~~~ 937 (958)
||+|+++|+++|+.|++++|||||+|+||+|.|+|...... ++..... ......++.+|+|+|++++|+
T Consensus 163 sKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L 242 (264)
T 3ucx_A 163 AKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFM 242 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSSSSSCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccCCcccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999998543110 1111111 112334678999999999997
Q ss_pred hcCCCCccccceEec
Q psy4557 938 LLQPSHSAVNSILIE 952 (958)
Q Consensus 938 l~~~~~~~i~~~~i~ 952 (958)
++ +...+++|..+.
T Consensus 243 ~s-~~~~~itG~~i~ 256 (264)
T 3ucx_A 243 AS-DLASGITGQALD 256 (264)
T ss_dssp HS-GGGTTCCSCEEE
T ss_pred cC-ccccCCCCCEEE
Confidence 65 555678877664
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=344.20 Aligned_cols=239 Identities=23% Similarity=0.324 Sum_probs=205.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|++++++++++++++.+.+
T Consensus 20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999999999999999999999999998777889999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHH--HHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILP--SMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~--~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++| .|.+ ++.|+|||+||.++..+.++...|++|
T Consensus 100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~~~g~iV~isS~~~~~~~~~~~~Y~as 178 (279)
T 3sju_A 100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMRE-AGWGRIVNIASTGGKQGVMYAAPYTAS 178 (279)
T ss_dssp CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHH-HTCEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhh-cCCcEEEEECChhhccCCCCChhHHHH
Confidence 9999999999998888889999999999999999999999999999 4663 346999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----------CChhhhhhhc-cccCCCCCCHHHHHHHHHHHh
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----------TDRDVVDKYD-ISKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----------~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l 938 (958)
|+|+++|+++|+.|++++||+||+|+||+|.|+|.... ..++....+. .....+..+|+|+|++++|++
T Consensus 179 Kaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~ 258 (279)
T 3sju_A 179 KHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYLV 258 (279)
T ss_dssp HHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTCTTSSCBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999985421 0111111111 122345789999999999965
Q ss_pred cCCCCccccceEec
Q psy4557 939 LQPSHSAVNSILIE 952 (958)
Q Consensus 939 ~~~~~~~i~~~~i~ 952 (958)
+ +...+++|..+.
T Consensus 259 s-~~a~~itG~~i~ 271 (279)
T 3sju_A 259 T-DAAASITAQALN 271 (279)
T ss_dssp S-SGGGGCCSCEEE
T ss_pred C-ccccCcCCcEEE
Confidence 4 666788887664
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=338.27 Aligned_cols=237 Identities=23% Similarity=0.330 Sum_probs=205.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|++++++++++++++.+.
T Consensus 6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (271)
T 3tzq_B 6 TAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV---GRGAVHHVVDLTNEVSVRALIDFTIDT 82 (271)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---CCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998888776 456778899999999999999999999
Q ss_pred cCCccEEEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 791 LGHIDILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 791 ~g~iDilInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
+|++|+||||||+.. ...+.+.+.++|++++++|+.|+++++++++|+|.++ +.|+|||+||.++..+.++...|++
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~~~~~~~Y~a 161 (271)
T 3tzq_B 83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISSATAHAAYDMSTAYAC 161 (271)
T ss_dssp HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTSBCSSCHHHHH
T ss_pred cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCHHHcCCCCCChHHHH
Confidence 999999999999873 4567789999999999999999999999999999854 4699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
||+|+++|+++|+.|++++||+||+|+||+|.|++............+. .....++.+|+|+|+.++|+++ +...+++
T Consensus 162 sKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s-~~~~~it 240 (271)
T 3tzq_B 162 TKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHLAGRIGEPHEIAELVCFLAS-DRAAFIT 240 (271)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---CHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHS-GGGTTCC
T ss_pred HHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-cccCCcC
Confidence 9999999999999999999999999999999999876333322222221 2233467899999999999765 5566788
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..+.
T Consensus 241 G~~i~ 245 (271)
T 3tzq_B 241 GQVIA 245 (271)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 87664
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=340.20 Aligned_cols=244 Identities=24% Similarity=0.406 Sum_probs=202.1
Q ss_pred cccccCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHH
Q psy4557 706 VNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKV 783 (958)
Q Consensus 706 ~~~~~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~ 783 (958)
.|.++ .++++|++|||||++|||+++|++|+++|++|++++| +.+.++++.+++... +.++.++++|++++++++++
T Consensus 16 ~n~~~-~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 94 (281)
T 3v2h_A 16 ENLYF-QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADM 94 (281)
T ss_dssp -------CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHH
T ss_pred cchhh-hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHH
Confidence 34433 5789999999999999999999999999999999999 677888888888654 56788999999999999999
Q ss_pred HHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC
Q psy4557 784 VREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863 (958)
Q Consensus 784 ~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~ 863 (958)
++++.+.+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+. +.|+|||+||.++..+.++.
T Consensus 95 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~ 173 (281)
T 3v2h_A 95 MAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK-GWGRIINIASAHGLVASPFK 173 (281)
T ss_dssp HHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTC
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECCcccccCCCCc
Confidence 99999999999999999999888888999999999999999999999999999999754 46999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhh----------h-hh-ccccCCCCCCHHHHH
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVV----------D-KY-DISKAVPVLTTKEIS 931 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~----------~-~~-~~~~~~~~~~p~~ia 931 (958)
+.|++||+|+++|+++|+.|++++||+||+|+||+|+|+|.......... . .+ ......++.+|+|+|
T Consensus 174 ~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~edvA 253 (281)
T 3v2h_A 174 SAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVA 253 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------------------CCTTCSCBCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHHhcCCCCCccCHHHHH
Confidence 99999999999999999999999999999999999999987543211100 0 01 111234578999999
Q ss_pred HHHHHHhcCCCCccccceEec
Q psy4557 932 QSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 932 ~~i~~~l~~~~~~~i~~~~i~ 952 (958)
++++|+++ +...+++|..+.
T Consensus 254 ~~v~~L~s-~~a~~itG~~i~ 273 (281)
T 3v2h_A 254 SLALYLAG-DDAAQITGTHVS 273 (281)
T ss_dssp HHHHHHHS-SGGGGCCSCEEE
T ss_pred HHHHHHcC-CCcCCCCCcEEE
Confidence 99999765 556678877654
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=336.14 Aligned_cols=237 Identities=22% Similarity=0.320 Sum_probs=206.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++++++++++++++.+.+
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 80 (259)
T 4e6p_A 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---GPAAYAVQMDVTRQDSIDAAIAATVEHA 80 (259)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999999999998888776 3467889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+++.+|+||++||.++..+.++.+.|++||+
T Consensus 81 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~ 160 (259)
T 4e6p_A 81 GGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKA 160 (259)
T ss_dssp SSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCCCChHHHHHHH
Confidence 99999999999988888899999999999999999999999999999986555799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----------CChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----------TDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----------~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
|+++|+++++.|++++||+||+|+||+|.|++.... ...+..... ......++.+|+|+|++++|+++
T Consensus 161 a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s- 239 (259)
T 4e6p_A 161 AVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLAS- 239 (259)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhhhhhhhhhccCChHHHHHHHhccCCCCCCcCHHHHHHHHHHHhC-
Confidence 999999999999999999999999999999985421 011111111 11233467899999999999654
Q ss_pred CCCccccceEec
Q psy4557 941 PSHSAVNSILIE 952 (958)
Q Consensus 941 ~~~~~i~~~~i~ 952 (958)
+...+++|..+.
T Consensus 240 ~~~~~itG~~i~ 251 (259)
T 4e6p_A 240 AESDYIVSQTYN 251 (259)
T ss_dssp GGGTTCCSCEEE
T ss_pred CccCCCCCCEEE
Confidence 666677776553
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=338.62 Aligned_cols=239 Identities=22% Similarity=0.391 Sum_probs=206.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC------------hhhHHHHHHHhhcCCCcEEEEEecCCCHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR------------IDRLENLKTSLQNAPGSIIVKKLDVTIEND 779 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~------------~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~ 779 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+ .+.++++.+.+...+.++.++++|++++++
T Consensus 6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 85 (281)
T 3s55_A 6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAA 85 (281)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 36899999999999999999999999999999999997 667777777777777889999999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC
Q psy4557 780 VKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP 859 (958)
Q Consensus 780 v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~ 859 (958)
++++++++.+.+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|.++ +.|+|||+||.++..+
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~ 164 (281)
T 3s55_A 86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR-NYGRIVTVSSMLGHSA 164 (281)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGGSC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECChhhcCC
Confidence 999999999999999999999999888888999999999999999999999999999999754 4699999999999999
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-----C-------Chhhhhh---hccccCCCC
Q psy4557 860 FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-----T-------DRDVVDK---YDISKAVPV 924 (958)
Q Consensus 860 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-----~-------~~~~~~~---~~~~~~~~~ 924 (958)
.++.+.|++||+|+++|+++|+.|++++||+||+|+||+|+|+|.... . ....... .......++
T Consensus 165 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (281)
T 3s55_A 165 NFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPF 244 (281)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHHHHHHHCSSSCSC
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHHHHHHhhhccCcCC
Confidence 999999999999999999999999999999999999999999987531 0 0000000 001112467
Q ss_pred CCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 925 LTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 925 ~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
.+|+|+|++++|+++ +...+++|..+.
T Consensus 245 ~~p~dvA~~v~~L~s-~~~~~itG~~i~ 271 (281)
T 3s55_A 245 LKPEEVTRAVLFLVD-EASSHITGTVLP 271 (281)
T ss_dssp BCHHHHHHHHHHHHS-GGGTTCCSCEEE
T ss_pred CCHHHHHHHHHHHcC-CcccCCCCCEEE
Confidence 899999999999765 555677776553
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=340.43 Aligned_cols=240 Identities=20% Similarity=0.254 Sum_probs=191.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.++++|++|||||++|||+++|++|+++|++|++++| +.+.++++.+++...+.++.++++|++|+++++++++++.+.
T Consensus 25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (280)
T 4da9_A 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAE 104 (280)
T ss_dssp SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999985 778888888888877788999999999999999999999999
Q ss_pred cCCccEEEEcccc--CCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCcEEEEecCccCcCCCCCChhh
Q psy4557 791 LGHIDILVNNAGV--MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR--RPGHILNISSNAGVRPFAGLAVY 866 (958)
Q Consensus 791 ~g~iDilInnAG~--~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~--~~g~IV~isS~~g~~~~~~~~~Y 866 (958)
+|++|+||||||+ ....++.+.+.++|++++++|+.|+++++++++|.|.+++ ..|+|||+||.++..+.++...|
T Consensus 105 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y 184 (280)
T 4da9_A 105 FGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDY 184 (280)
T ss_dssp HSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------CCHHH
T ss_pred cCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCCCccHH
Confidence 9999999999998 4556788999999999999999999999999999997543 26899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
++||+|+++|+++|+.|++++||+||+|+||+|+|+|.............. .....++.+|+|+|++++|+++ +...+
T Consensus 185 ~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s-~~~~~ 263 (280)
T 4da9_A 185 CMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESGLVPMRRWGEPEDIGNIVAGLAG-GQFGF 263 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------CCBCHHHHHHHHHHHHT-STTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchhHHHHHhhcCCCcCCcCCHHHHHHHHHHHhC-ccccC
Confidence 999999999999999999999999999999999999976432211100011 1223467899999999999765 56678
Q ss_pred ccceEec
Q psy4557 946 VNSILIE 952 (958)
Q Consensus 946 i~~~~i~ 952 (958)
++|..+.
T Consensus 264 itG~~i~ 270 (280)
T 4da9_A 264 ATGSVIQ 270 (280)
T ss_dssp GTTCEEE
T ss_pred CCCCEEE
Confidence 8887653
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=362.10 Aligned_cols=359 Identities=27% Similarity=0.398 Sum_probs=270.5
Q ss_pred cccCceEEeccccchHHHHHHHHhcCC--CCeEEEeccCCChhhHHHHHHHHHHHhcccc---ccccccCceEEecccCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDT--KCTLFCPVRETPNKTLLQRLEDIMLKYHMSL---DLNNYTDRLILVKSDLS 391 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~--~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~---~~~~~~~ri~~v~gDl~ 391 (958)
.+.++|||||||||||++|+++|+++. +.+|+|++|..+...+.+++.+.+..+.... .......++.++.||++
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 150 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKS 150 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECC
Confidence 357899999999999999999999874 4799999999887777777765432211000 00112468999999999
Q ss_pred CCCCCCCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCcc
Q psy4557 392 LEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQE 470 (958)
Q Consensus 392 ~~~lGL~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e 470 (958)
++.+|++. +.+..+.+++|+||||||.+++ .++.+.+++||.||.+|+++|...++++|+|+||.+||+... ..+.|
T Consensus 151 ~~~~gld~-~~~~~~~~~~D~Vih~Aa~~~~-~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~~~E 228 (478)
T 4dqv_A 151 EPDLGLDQ-PMWRRLAETVDLIVDSAAMVNA-FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTE 228 (478)
T ss_dssp SGGGGCCH-HHHHHHHHHCCEEEECCSSCSB-SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTTCCS
T ss_pred CcccCCCH-HHHHHHHcCCCEEEECccccCC-cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCCcCC
Confidence 99999975 7899999999999999999988 778888899999999999999998889999999999998642 23444
Q ss_pred cccccCc----CCCCCCCCChhHHHHHHHHHHHHHhh-CCCCEEEEecCceeccCC-CCCcChhHHHHHHHHHHHHhCCc
Q psy4557 471 DYTVADF----DDFMTTTSGYGQSKIVSEYLVLNAGQ-MGLPVSIVRCGNIGGSLE-FKNWNLVDLNLYILKAITRLGYA 544 (958)
Q Consensus 471 ~~~~~~~----~~~~~~~~gY~~SK~~aE~lv~~a~~-~glp~~I~R~g~i~G~~~-~g~~n~~d~~~~l~~~~~~~g~~ 544 (958)
+.+.... .......++|++||+++|++++.+.+ .|++++|+|||+|||++. +|.+|..+++.++++.+...|..
T Consensus 229 ~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~~g~~ 308 (478)
T 4dqv_A 229 DADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIA 308 (478)
T ss_dssp SSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHHHCEE
T ss_pred cccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHHcCcc
Confidence 3221100 00112246799999999999988764 699999999999999976 67889999999999999999988
Q ss_pred CCC-----------CCcCCcccHHHHHHHHHHHhcC----cCCCCceEEecCCCC--CCHHHHHHHHHHcCCCcccc-Ch
Q psy4557 545 PDI-----------DWYLEFTPVDFLTKSLVQLTTN----VNNANKIYNFINTNP--IHIKTLVSVLNTYGYNIKTV-PY 606 (958)
Q Consensus 545 P~~-----------~~~~~~~pVD~va~aiv~l~~~----~~~~~~v~h~~n~~~--~~~~~l~~~l~~~g~~~~~v-~~ 606 (958)
|.. +..++|+|||++|++++.++.. ....+++||++++++ ++|.|+++++.+.|++++.+ ++
T Consensus 309 P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~g~~~~~i~~~ 388 (478)
T 4dqv_A 309 PRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEAGYPIRRIDDF 388 (478)
T ss_dssp ESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHTTCSCEEESSH
T ss_pred cccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHcCCCcccCCCH
Confidence 754 4568999999999999998865 445678999999988 99999999999999998887 89
Q ss_pred HHHHHHHhccC--CC-----chhHHHHhhc---cccccc--cCcccccHHHHHHHhhC--C--C---CCCCCCHHHHHHH
Q psy4557 607 EKWFHKLNKRE--LS-----EPLIQILRNK---GKEYLT--VNNSYCQRNTLALLKSC--D--E---TYPETNDHTVRQF 667 (958)
Q Consensus 607 ~eW~~~~~~~~--~~-----~~~~~~~~~~---~~~~~~--~~~~~~~~~t~~~L~~~--~--~---~~p~~~~~~~~~~ 667 (958)
.+|+.++.... .. .+++.++... ...... ........+-+.+.++. | . ..|.+++++|.+|
T Consensus 389 ~~w~~~l~~~~~~~~~~~~~~~llpll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 468 (478)
T 4dqv_A 389 AEWLQRFEASLGALPDRQRRHSVLPMLLASNSQRLQPLKPTRGCSAPTDRFRAAVRAAKVGSDKDNPDIPHVSAPTIINY 468 (478)
T ss_dssp HHHHHHHHHHHHTSCHHHHHTSSSTTCC--CCCBCC------CCSSCCHHHHHHHHHTTCSSCSSSCCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHhccCccccccCcchhHHHHhhccCCCCCcccccCcchHHHHHHHHHHhccCCCcCcccCCCCCHHHHHHH
Confidence 99999753321 01 1122222111 010000 01222233444444443 3 2 4899999999999
Q ss_pred HHHHHHCCCC
Q psy4557 668 LDNLRNSNLL 677 (958)
Q Consensus 668 ~~~~~~~g~l 677 (958)
++.|..-|.|
T Consensus 469 ~~~~~~~~~~ 478 (478)
T 4dqv_A 469 VTNLQLLGLL 478 (478)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHhhcCC
Confidence 9999988875
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=345.33 Aligned_cols=240 Identities=27% Similarity=0.447 Sum_probs=207.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC------------hhhHHHHHHHhhcCCCcEEEEEecCCCHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR------------IDRLENLKTSLQNAPGSIIVKKLDVTIEND 779 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~------------~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~ 779 (958)
++++||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+++...+.++.++++|++++++
T Consensus 42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLAS 121 (317)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 46899999999999999999999999999999999886 677788877777777889999999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC
Q psy4557 780 VKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP 859 (958)
Q Consensus 780 v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~ 859 (958)
++++++++.+.+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|++++.+|+|||+||.++..+
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~ 201 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRG 201 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCC
Confidence 99999999999999999999999988888899999999999999999999999999999986655799999999999999
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC------------CChhh-hhhhc--cccCCCC
Q psy4557 860 FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS------------TDRDV-VDKYD--ISKAVPV 924 (958)
Q Consensus 860 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~------------~~~~~-~~~~~--~~~~~~~ 924 (958)
.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|.... ..... ...+. .....++
T Consensus 202 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 281 (317)
T 3oec_A 202 APGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLPIPW 281 (317)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSSCCHHHHHHHHTTTCSSSSSS
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhhccccchhHHHHHHhhhccCCCCC
Confidence 999999999999999999999999999999999999999999975320 00000 01010 1111457
Q ss_pred CCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 925 LTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 925 ~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
.+|+|+|++++|+++ +...+++|..|.
T Consensus 282 ~~pedvA~av~fL~s-~~a~~itG~~i~ 308 (317)
T 3oec_A 282 VEPEDVSNAVAWLAS-DEARYIHGAAIP 308 (317)
T ss_dssp BCHHHHHHHHHHHTS-GGGTTCCSCEEE
T ss_pred CCHHHHHHHHHHHcC-CcccCCCCCEEE
Confidence 799999999999664 666788887664
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=337.36 Aligned_cols=240 Identities=23% Similarity=0.332 Sum_probs=206.6
Q ss_pred ccCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 709 VFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 709 ~~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
+...+++||++|||||++|||+++|++|+++|++|+++++ +.+.++++.+++...+.++.++++|++++++++++++++
T Consensus 11 ~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 90 (270)
T 3is3_A 11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQA 90 (270)
T ss_dssp CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 3446789999999999999999999999999999999766 466788888888877788999999999999999999999
Q ss_pred HHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCcc-CcCCCCCChhh
Q psy4557 788 LAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNA-GVRPFAGLAVY 866 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~-g~~~~~~~~~Y 866 (958)
.+.+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|.+ +|+||++||.. +..+.++.+.|
T Consensus 91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~---~g~iv~isS~~~~~~~~~~~~~Y 167 (270)
T 3is3_A 91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTE---GGRIVLTSSNTSKDFSVPKHSLY 167 (270)
T ss_dssp HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT---TCEEEEECCTTTTTCCCTTCHHH
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc---CCeEEEEeCchhccCCCCCCchh
Confidence 999999999999999988888899999999999999999999999999999952 58999999998 56788999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-----------CChhhhhhh-ccccCCCCCCHHHHHHHH
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-----------TDRDVVDKY-DISKAVPVLTTKEISQSI 934 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-----------~~~~~~~~~-~~~~~~~~~~p~~ia~~i 934 (958)
++||+|+++|+++|+.|++++|||||+|+||+|+|+|.... ......... ......+..+|+|+|+++
T Consensus 168 ~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v 247 (270)
T 3is3_A 168 SGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVV 247 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHSTTCSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999986421 001111111 112344678999999999
Q ss_pred HHHhcCCCCccccceEec
Q psy4557 935 IFALLQPSHSAVNSILIE 952 (958)
Q Consensus 935 ~~~l~~~~~~~i~~~~i~ 952 (958)
+|+++ +...+++|..|.
T Consensus 248 ~~L~s-~~~~~itG~~i~ 264 (270)
T 3is3_A 248 GFLVS-KEGEWVNGKVLT 264 (270)
T ss_dssp HHHTS-GGGTTCCSCEEE
T ss_pred HHHcC-CccCCccCcEEE
Confidence 99664 666788887654
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=358.01 Aligned_cols=334 Identities=22% Similarity=0.258 Sum_probs=261.1
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCC-CCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSL-EMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~-~~lG 396 (958)
+.++|||||||||||++|+++|++ .+.+|+|++|......+.+++.+.+..+...........++.++.||++. +.++
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQG-YSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTT-TEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCEEEEecCCcHHHHHHHHHHHc-CCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 457899999999999999999964 45799999999887777888887776652110011234789999999987 4554
Q ss_pred CCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC------CCCcc
Q psy4557 397 LKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS------ENFQE 470 (958)
Q Consensus 397 L~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~------~~~~e 470 (958)
...++|+||||||.+++..++..++++||.||.+++++|.. +.++|+|+||.++ |... .++.|
T Consensus 147 ---------~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~E 215 (427)
T 4f6c_A 147 ---------LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSE 215 (427)
T ss_dssp ---------CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEECT
T ss_pred ---------CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCccccc
Confidence 34689999999999988888888999999999999999988 6799999999999 5321 12222
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcCh---hHHHHHHHHHHHHhCCcCC-
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNL---VDLNLYILKAITRLGYAPD- 546 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~---~d~~~~l~~~~~~~g~~P~- 546 (958)
+.. .....+.++|++||+.+|+++..+.+.|++++|+|||+|+|+...+.++. .++++.+++.+...+.+|.
T Consensus 216 ~~~----~~~~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (427)
T 4f6c_A 216 ADV----YKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVS 291 (427)
T ss_dssp TCS----CSSCCCCSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHH
T ss_pred ccc----ccCCCCCCchHHHHHHHHHHHHHHHHcCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCc
Confidence 221 11124678999999999999998877899999999999999998776543 3677888898888887775
Q ss_pred -CCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccCCCchhHHH
Q psy4557 547 -IDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQI 625 (958)
Q Consensus 547 -~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~~~~~~~~~ 625 (958)
.+..++|+|||++|++++.++.... .+.+||+.++.+++|.|+++.+.+.| ++.++..+|...+... ...++..+
T Consensus 292 ~~~~~~~~v~v~DvA~ai~~~~~~~~-~g~~~~l~~~~~~s~~el~~~i~~~g--~~~~~~~~~~~~l~~~-~~~~~~~~ 367 (427)
T 4f6c_A 292 MAEMPVDFSFVDTTARQIVALAQVNT-PQIIYHVLSPNKMPVKSLLECVKRKE--IELVSDESFNEILQKQ-DMYETIGL 367 (427)
T ss_dssp HHTCEECCEEHHHHHHHHHHHTTSCC-CCSEEEESCSCCEEHHHHHHHHHSSC--CEEECHHHHHHHHHHT-TCHHHHHH
T ss_pred cccceEEEeeHHHHHHHHHHHHcCCC-CCCEEEecCCCCCcHHHHHHHHHHcC--CcccCHHHHHHHHHhc-Cchhhhhh
Confidence 3567899999999999999987766 78999999999999999999999887 8999999999986543 23334444
Q ss_pred HhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHC
Q psy4557 626 LRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNS 674 (958)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~ 674 (958)
+... .......||+++|.+.|++.|+.||+++.+++++|++|+.+.
T Consensus 368 ~~~~---~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~ 413 (427)
T 4f6c_A 368 TSVD---REQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTI 413 (427)
T ss_dssp HHHH---HTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHH
T ss_pred hhcc---ccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 4321 122357899999999999999999999999999999999865
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=337.25 Aligned_cols=236 Identities=22% Similarity=0.373 Sum_probs=203.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++..+++|+++.++++++++++.+.+
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---GSKAFGVRVDVSSAKDAESMVEKTTAKW 99 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999999999999888887765 4568889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+ ++.|+|||+||.++..+.++...|++||+
T Consensus 100 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~Y~asKa 178 (277)
T 4dqx_A 100 GRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRR-NGGGSIINTTSYTATSAIADRTAYVASKG 178 (277)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-TTCEEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCcEEEEECchhhCcCCCCChhHHHHHH
Confidence 99999999999988888889999999999999999999999999999974 45699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----CChhhh-hhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----TDRDVV-DKY-DISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~~~~~~-~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
|+++|+++|+.|++++||+||+|+||+|+|+|.... ...... ..+ ......++.+|+|+|++++|+++ +...+
T Consensus 179 a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s-~~~~~ 257 (277)
T 4dqx_A 179 AISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDRMGTAEEIAEAMLFLAS-DRSRF 257 (277)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTSTTCSCBCHHHHHHHHHHHHS-GGGTT
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcCcccCCcCHHHHHHHHHHHhC-CccCC
Confidence 999999999999999999999999999999983221 111110 111 11223467899999999999765 55567
Q ss_pred ccceEec
Q psy4557 946 VNSILIE 952 (958)
Q Consensus 946 i~~~~i~ 952 (958)
++|..+.
T Consensus 258 itG~~i~ 264 (277)
T 4dqx_A 258 ATGSILT 264 (277)
T ss_dssp CCSCEEE
T ss_pred CcCCEEE
Confidence 7776653
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=334.22 Aligned_cols=233 Identities=21% Similarity=0.302 Sum_probs=204.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++|.++++++++++.+.+
T Consensus 4 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999998888776 3468899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|.+ +|+|||+||.++..+.++.+.|++||+
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~---~g~iv~isS~~~~~~~~~~~~Y~asKa 157 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIRE---GGSIVFTSSVADEGGHPGMSVYSASKA 157 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEECCGGGSSBCTTBHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc---CCEEEEECChhhcCCCCCchHHHHHHH
Confidence 99999999999988888999999999999999999999999999998852 489999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhh----h-ccccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDK----Y-DISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~----~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
|+++|+++|+.|++++|||||+|+||+|+|++..... ....... . ...+..+..+|+|+|++++|++++ ..+
T Consensus 158 a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~--~~~ 235 (255)
T 4eso_A 158 ALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTADEVARAVLFLAFE--ATF 235 (255)
T ss_dssp HHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHHT--CTT
T ss_pred HHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCCCCCcCHHHHHHHHHHHcCc--CcC
Confidence 9999999999999999999999999999999875422 1111111 1 112345678999999999998774 567
Q ss_pred ccceEec
Q psy4557 946 VNSILIE 952 (958)
Q Consensus 946 i~~~~i~ 952 (958)
++|..+.
T Consensus 236 itG~~i~ 242 (255)
T 4eso_A 236 TTGAKLA 242 (255)
T ss_dssp CCSCEEE
T ss_pred ccCCEEE
Confidence 8877654
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=339.94 Aligned_cols=241 Identities=22% Similarity=0.332 Sum_probs=207.1
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCC---cEEEEEecCCCHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG---SIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~---~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
+..+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+. ++.++++|+++++++++++++
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 84 (281)
T 3svt_A 5 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDA 84 (281)
T ss_dssp ---CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHH
T ss_pred CccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999988876554 788999999999999999999
Q ss_pred HHHHcCCccEEEEcccc-CCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh
Q psy4557 787 VLAELGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 787 ~~~~~g~iDilInnAG~-~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~ 865 (958)
+.+.+|++|+||||||+ ....++.+.+.++|++++++|+.|+++++++++|.|.++ +.|+|||+||.++..+.++.+.
T Consensus 85 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~ 163 (281)
T 3svt_A 85 VTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRG-GGGSFVGISSIAASNTHRWFGA 163 (281)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHSCCTTCTH
T ss_pred HHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEeCHHHcCCCCCChh
Confidence 99999999999999998 455678899999999999999999999999999999854 4699999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-CChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-TDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|++||+|+++|+++++.|++++|||||+|+||+|.|+|.... ........+ ......+..+|+|+|++++|+++ +..
T Consensus 164 Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s-~~~ 242 (281)
T 3svt_A 164 YGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPLPRQGEVEDVANMAMFLLS-DAA 242 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCSSSSCBCHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-ccc
Confidence 999999999999999999999999999999999999986532 111111111 12233467899999999999775 445
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..+.
T Consensus 243 ~~itG~~~~ 251 (281)
T 3svt_A 243 SFVTGQVIN 251 (281)
T ss_dssp TTCCSCEEE
T ss_pred CCCCCCEEE
Confidence 577776553
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=340.25 Aligned_cols=238 Identities=23% Similarity=0.317 Sum_probs=202.9
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
...+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++|+++++++++++.+
T Consensus 23 ~~~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (277)
T 3gvc_A 23 NHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---GCGAAACRVDVSDEQQIIAMVDACVA 99 (277)
T ss_dssp ----CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---CSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CCcceEEEecCCCHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999988888776 45678899999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
.+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||.++..+.++...|++|
T Consensus 100 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~~~~~~~~~~~~Y~as 178 (277)
T 3gvc_A 100 AFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLSSLAGQVAVGGTGAYGMS 178 (277)
T ss_dssp HHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTSCCTTBHHHHHH
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhccCCCCchhHHHH
Confidence 99999999999999888888899999999999999999999999999999854 46999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--h-hh----hhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--R-DV----VDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~-~~----~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
|+|+++|+++|+.|++++||+||+|+||+|+|+|...... . .. ..........++.+|+|+|++++|+++ +.
T Consensus 179 Kaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s-~~ 257 (277)
T 3gvc_A 179 KAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQGRMAAPEEMAGIVVFLLS-DD 257 (277)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTCC------CCHHHHHHHHHSSCBCHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhcchhhHHHHhhhhhhhccccCCCCHHHHHHHHHHHcC-Cc
Confidence 9999999999999999999999999999999997532100 0 00 000001122467899999999999765 55
Q ss_pred CccccceEec
Q psy4557 943 HSAVNSILIE 952 (958)
Q Consensus 943 ~~~i~~~~i~ 952 (958)
..+++|..+.
T Consensus 258 a~~itG~~i~ 267 (277)
T 3gvc_A 258 ASMITGTTQI 267 (277)
T ss_dssp GTTCCSCEEE
T ss_pred cCCccCcEEE
Confidence 5677776653
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=334.09 Aligned_cols=234 Identities=23% Similarity=0.266 Sum_probs=187.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++++++++++++++.+.+
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL---GAAVRFRNADVTNEADATAALAFAKQEF 79 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC---------------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999999999999999999998888777665 3467888999999999999999999999
Q ss_pred CCccEEEEccccCCCccc----cCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-----CCCcEEEEecCccCcCCCCC
Q psy4557 792 GHIDILVNNAGVMYFTLM----EKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS-----RRPGHILNISSNAGVRPFAG 862 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~----~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~-----~~~g~IV~isS~~g~~~~~~ 862 (958)
|++|+||||||+.....+ .+.+.++|++++++|+.|+++++++++|+|.++ ++.|+|||+||.++..+.++
T Consensus 80 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~~ 159 (257)
T 3tpc_A 80 GHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIG 159 (257)
T ss_dssp SCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTT
T ss_pred CCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCCCC
Confidence 999999999999765443 367899999999999999999999999999753 25689999999999999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccC-CCCCCHHHHHHHHHHHhcC
Q psy4557 863 LAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKA-VPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 863 ~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~-~~~~~p~~ia~~i~~~l~~ 940 (958)
...|++||+|+++|+++|+.|++++||+||+|+||+|.|+|....... ...... .... .++.+|+|+|+.++|+++.
T Consensus 160 ~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~-~~~~~~~~~p~~~r~~~~~dva~~v~~l~s~ 238 (257)
T 3tpc_A 160 QAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQD-VQDALAASVPFPPRLGRAEEYAALVKHICEN 238 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC---------------CCSSSSCSCBCHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCHH-HHHHHHhcCCCCCCCCCHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999997643221 111111 1122 4678999999999998864
Q ss_pred CCCccccceEec
Q psy4557 941 PSHSAVNSILIE 952 (958)
Q Consensus 941 ~~~~~i~~~~i~ 952 (958)
.+++|..+.
T Consensus 239 ---~~itG~~i~ 247 (257)
T 3tpc_A 239 ---TMLNGEVIR 247 (257)
T ss_dssp ---TTCCSCEEE
T ss_pred ---CCcCCcEEE
Confidence 467766553
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-37 Score=333.01 Aligned_cols=236 Identities=23% Similarity=0.376 Sum_probs=205.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++||++|||||++|||+++|++|+++|++|++++++ .++++++.+++...+.++.++.+|++++++++++++++.+.
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999998665 57788888888877788999999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-CCCChhhhHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP-FAGLAVYTGT 869 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~-~~~~~~Y~as 869 (958)
+|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|. ..|+||++||..+..+ .++.+.|++|
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~---~~g~iv~isS~~~~~~~~~~~~~Y~as 183 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLG---DGGRIITIGSNLAELVPWPGISLYSAS 183 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCC---TTCEEEEECCGGGTCCCSTTCHHHHHH
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHh---cCCEEEEEeChhhccCCCCCchHHHHH
Confidence 99999999999998888889999999999999999999999999999985 2589999999877665 7899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+|+++|+++|+.|++++|||||+|+||+|+|+|........ ..........+..+|+|+|+.++|+++ +...+++|.
T Consensus 184 Kaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~-~~~~~~~~~~r~~~pedvA~~v~fL~s-~~~~~itG~ 261 (271)
T 3v2g_A 184 KAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGDHA-EAQRERIATGSYGEPQDIAGLVAWLAG-PQGKFVTGA 261 (271)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCSSH-HHHHHTCTTSSCBCHHHHHHHHHHHHS-GGGTTCCSC
T ss_pred HHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccchhH-HHHHhcCCCCCCCCHHHHHHHHHHHhC-cccCCccCC
Confidence 999999999999999999999999999999999975432211 111112233467899999999999765 666788887
Q ss_pred Eec
Q psy4557 950 LIE 952 (958)
Q Consensus 950 ~i~ 952 (958)
.|.
T Consensus 262 ~i~ 264 (271)
T 3v2g_A 262 SLT 264 (271)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=339.46 Aligned_cols=239 Identities=21% Similarity=0.312 Sum_probs=207.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.. .+.++.++++|++++++++++++++.+.
T Consensus 23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 102 (277)
T 4fc7_A 23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKE 102 (277)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999988888877743 3567889999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+. +.|+|||+||.++..+.++...|++||
T Consensus 103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK 181 (277)
T 4fc7_A 103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRD-HGGVIVNITATLGNRGQALQVHAGSAK 181 (277)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECCSHHHHTCTTCHHHHHHH
T ss_pred cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhhCCCCCCcHHHHHHH
Confidence 9999999999999887888899999999999999999999999999999744 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC--CChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS--TDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~--~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
+|+++|+++|+.|++++|||||+|+||+|.|++.... ......... ......++.+|+|+|.+++|+++ +...+++
T Consensus 182 aa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~fL~s-~~~~~it 260 (277)
T 4fc7_A 182 AAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLAS-PLASYVT 260 (277)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHS-GGGTTCC
T ss_pred HHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCCCCCCcCHHHHHHHHHHHcC-CccCCcC
Confidence 9999999999999999999999999999999863211 111111111 12234467899999999999765 6667888
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..+.
T Consensus 261 G~~i~ 265 (277)
T 4fc7_A 261 GAVLV 265 (277)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 87664
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=330.03 Aligned_cols=236 Identities=29% Similarity=0.456 Sum_probs=205.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+|+||+++||||++|||+++|++|+++|++|++++| +.++++++.+++...+.++.++++|++++++++++++++.+.+
T Consensus 1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 1 MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF 80 (246)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 368999999999999999999999999999999999 8888888888887666778899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.++ +.|+||++||.++..+.++...|++||+
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK~ 159 (246)
T 2uvd_A 81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQ-RHGRIVNIASVVGVTGNPGQANYVAAKA 159 (246)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHHCCTTBHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECCHHhcCCCCCCchHHHHHH
Confidence 999999999999877788899999999999999999999999999999744 4599999999999989999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+.+|+++|+.|++++||+||+|+||+++|+|....... ....+ ...+..++.+|+|+|+.++|+++ +...+++|..
T Consensus 160 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~p~~~~~~~~dvA~~~~~l~s-~~~~~~tG~~ 237 (246)
T 2uvd_A 160 GVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDEN-IKAEMLKLIPAAQFGEAQDIANAVTFFAS-DQSKYITGQT 237 (246)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTT-HHHHHHHTCTTCSCBCHHHHHHHHHHHHS-GGGTTCCSCE
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHH-HHHHHHhcCCCCCCcCHHHHHHHHHHHcC-chhcCCCCCE
Confidence 999999999999999999999999999999987643221 11111 11223457899999999999775 5556677655
Q ss_pred e
Q psy4557 951 I 951 (958)
Q Consensus 951 i 951 (958)
+
T Consensus 238 ~ 238 (246)
T 2uvd_A 238 L 238 (246)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=335.89 Aligned_cols=228 Identities=22% Similarity=0.345 Sum_probs=197.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh-------HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-------LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVR 785 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~-------l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~ 785 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++ ++++.+++...+.++.++++|++++++++++++
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 82 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA 82 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999764 667777776667789999999999999999999
Q ss_pred HHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC--CCCC
Q psy4557 786 EVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--FAGL 863 (958)
Q Consensus 786 ~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~--~~~~ 863 (958)
++.+.+|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|+|++ ++.|+|||+||.++..+ .++.
T Consensus 83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~iv~isS~~~~~~~~~~~~ 161 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQ-APNPHILTLAPPPSLNPAWWGAH 161 (274)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTT-SSSCEEEECCCCCCCCHHHHHHC
T ss_pred HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHh-cCCceEEEECChHhcCCCCCCCC
Confidence 99999999999999999988888889999999999999999999999999999974 45699999999999988 7888
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECC-cccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAG-DVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG-~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
..|++||+|+++|+++|+.|++++|||||+|+|| +++|+|....... ...+..+|+|+|+.++|+++ +.
T Consensus 162 ~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~~~~~~~---------~~~~~~~pedvA~~v~~l~s-~~ 231 (274)
T 3e03_A 162 TGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAINMLPGV---------DAAACRRPEIMADAAHAVLT-RE 231 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------CC---------CGGGSBCTHHHHHHHHHHHT-SC
T ss_pred chHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchhhhcccc---------cccccCCHHHHHHHHHHHhC-cc
Confidence 9999999999999999999999999999999999 6999987322111 11235789999999999775 55
Q ss_pred CccccceEe
Q psy4557 943 HSAVNSILI 951 (958)
Q Consensus 943 ~~~i~~~~i 951 (958)
..+++|..+
T Consensus 232 ~~~itG~~i 240 (274)
T 3e03_A 232 AAGFHGQFL 240 (274)
T ss_dssp CTTCCSCEE
T ss_pred ccccCCeEE
Confidence 567777765
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=328.77 Aligned_cols=237 Identities=27% Similarity=0.358 Sum_probs=209.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+.++.++.+|++++++++++++++.+.+|
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENL 81 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999999999998887778899999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.++ +.|+||++||.++..+.++...|++||+|
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~a 160 (247)
T 3lyl_A 82 AIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGSVVGSAGNPGQTNYCAAKAG 160 (247)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHHCCTTCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcchhhccCCCCcHHHHHHHHH
Confidence 99999999999888888899999999999999999999999999999754 46999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
+++|+++++.|++++||+||+|+||+|.|+|....... ..... ......+..+|+|+|+.++|+++ +...+++|..+
T Consensus 161 ~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~dva~~i~~l~s-~~~~~~tG~~i 238 (247)
T 3lyl_A 161 VIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLTDE-QKSFIATKIPSGQIGEPKDIAAAVAFLAS-EEAKYITGQTL 238 (247)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSCHH-HHHHHHTTSTTCCCBCHHHHHHHHHHHHS-GGGTTCCSCEE
T ss_pred HHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhccHH-HHHHHhhcCCCCCCcCHHHHHHHHHHHhC-CCcCCccCCEE
Confidence 99999999999999999999999999999997654322 21111 12233467899999999999765 44566777655
Q ss_pred c
Q psy4557 952 E 952 (958)
Q Consensus 952 ~ 952 (958)
.
T Consensus 239 ~ 239 (247)
T 3lyl_A 239 H 239 (247)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=336.63 Aligned_cols=237 Identities=24% Similarity=0.328 Sum_probs=203.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+ +.++++.+++...+.++.++++|++|.++++++ .+..+.+
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~-~~~~~~~ 104 (273)
T 3uf0_A 27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLEGAANV-AEELAAT 104 (273)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHH-HHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHH-HHHHHhc
Confidence 35899999999999999999999999999999999965 667777778877777899999999999999999 4555677
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.++ +.|+|||+||.++..+.++...|++||+
T Consensus 105 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~~~~~~~~~~~~Y~asKa 183 (273)
T 3uf0_A 105 RRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAH-GSGRIVTIASMLSFQGGRNVAAYAASKH 183 (273)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCSSCHHHHHHHH
T ss_pred CCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcchHhcCCCCCChhHHHHHH
Confidence 999999999999888888999999999999999999999999999999754 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+++|+++|+.|++++||+||+|+||+|.|++..... .+...... ......++.+|+|+|++++|+++ +...+++|.
T Consensus 184 a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L~s-~~a~~itG~ 262 (273)
T 3uf0_A 184 AVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARIPAGRWATPEDMVGPAVFLAS-DAASYVHGQ 262 (273)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHSTTSSCBCGGGGHHHHHHHHS-GGGTTCCSC
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-chhcCCcCC
Confidence 9999999999999999999999999999999864321 11111111 11233467899999999999765 556678876
Q ss_pred Eec
Q psy4557 950 LIE 952 (958)
Q Consensus 950 ~i~ 952 (958)
.+.
T Consensus 263 ~i~ 265 (273)
T 3uf0_A 263 VLA 265 (273)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=339.16 Aligned_cols=236 Identities=21% Similarity=0.262 Sum_probs=199.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC---hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR---IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~---~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+ .++++++.+++...+.++.++++|++|+++++++++++.
T Consensus 7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999999999998764 557888888887777889999999999999999999999
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
+.+|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|+|. +.|+||++||.++..+.++.+.|++
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~---~~g~iv~isS~~~~~~~~~~~~Y~a 163 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMN---PNGHIITIATSLLAAYTGFYSTYAG 163 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEE---EEEEEEEECCCHHHHHHCCCCC---
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhc---CCCEEEEEechhhccCCCCCchhHH
Confidence 9999999999999998888889999999999999999999999999999983 3589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
||+|+.+|+++|+.|++++|||||+|+||+|+|+|............. ......+..+|+|+|+.++|+++. ..+++
T Consensus 164 sKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~--~~~it 241 (262)
T 3ksu_A 164 NKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETKESTAFHKSQAMGNQLTKIEDIAPIIKFLTTD--GWWIN 241 (262)
T ss_dssp --CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC------------CCCCSCCGGGTHHHHHHHHTT--TTTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCchHHHHHHHhcCcccCCCCHHHHHHHHHHHcCC--CCCcc
Confidence 999999999999999999999999999999999986543222211111 112334678999999999998764 67888
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..|.
T Consensus 242 G~~i~ 246 (262)
T 3ksu_A 242 GQTIF 246 (262)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 87764
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=336.07 Aligned_cols=236 Identities=24% Similarity=0.416 Sum_probs=199.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC------------hhhHHHHHHHhhcCCCcEEEEEecCCCHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR------------IDRLENLKTSLQNAPGSIIVKKLDVTIEND 779 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~------------~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~ 779 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+.+...+.++.++++|++++++
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES 88 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 46899999999999999999999999999999999987 677787777776667789999999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC
Q psy4557 780 VKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP 859 (958)
Q Consensus 780 v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~ 859 (958)
++++++++.+.+|++|+||||||+..... +.++|++++++|+.|+++++++++|+|.+++..|+|||+||.++..+
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~ 164 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIAPMSA----GDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAG 164 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCSS----THHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCC----CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCC
Confidence 99999999999999999999999875432 58999999999999999999999999986555799999999999887
Q ss_pred C----CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhh----------hccccCCCCC
Q psy4557 860 F----AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDK----------YDISKAVPVL 925 (958)
Q Consensus 860 ~----~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~----------~~~~~~~~~~ 925 (958)
. ++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|............ .......++.
T Consensus 165 ~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 244 (278)
T 3sx2_A 165 VGSADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMPVEVL 244 (278)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTTSCSSSCSSB
T ss_pred CccCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhhhhhcCcCcC
Confidence 7 7788899999999999999999999999999999999999999753211111000 0001114577
Q ss_pred CHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 926 TTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 926 ~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+|+|+|++++|+++ +...+++|..+.
T Consensus 245 ~p~dvA~~v~~l~s-~~~~~itG~~i~ 270 (278)
T 3sx2_A 245 APEDVANAVAWLVS-DQARYITGVTLP 270 (278)
T ss_dssp CHHHHHHHHHHHTS-GGGTTCCSCEEE
T ss_pred CHHHHHHHHHHHhC-cccccccCCEEe
Confidence 99999999999665 556678876653
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=338.65 Aligned_cols=238 Identities=19% Similarity=0.238 Sum_probs=208.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++..+.+|+++.++++++++++.+.
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~- 107 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI- 107 (275)
T ss_dssp HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH-
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh-
Confidence 4589999999999999999999999999999999999999999999888877788999999999999999999999887
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+|||+||.++..+.++...|++||+
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~~~~~~~~~~~~Y~asKa 186 (275)
T 4imr_A 108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KWGRVVSIGSINQLRPKSVVTAYAATKA 186 (275)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHHhCCCCCCchhhHHHHH
Confidence 999999999999888888999999999999999999999999999999754 4699999999999998888999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC--Chhhhhhh-ccc-cCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST--DRDVVDKY-DIS-KAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~--~~~~~~~~-~~~-~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
|+++|+++|+.|++++||+||+|+||+|+|+|..... .++..... ... ...+..+|+|+|.+++|+++ +...+++
T Consensus 187 a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s-~~a~~it 265 (275)
T 4imr_A 187 AQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLNWMGRAGRPEEMVGAALFLAS-EACSFMT 265 (275)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHSTTCSCBCGGGGHHHHHHHHS-GGGTTCC
T ss_pred HHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhcCccCCCcCHHHHHHHHHHHcC-cccCCCC
Confidence 9999999999999999999999999999999854321 11111111 111 34567899999999999765 5666888
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..|.
T Consensus 266 G~~i~ 270 (275)
T 4imr_A 266 GETIF 270 (275)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 87664
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=330.64 Aligned_cols=237 Identities=24% Similarity=0.387 Sum_probs=201.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL- 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~- 791 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|++++++++++++++.+.+
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 97 (273)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999999988888887666778899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.++ +.|+||++||.++..+.++...|++||+
T Consensus 98 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK~ 176 (273)
T 1ae1_A 98 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIAGFSALPSVSLYSASKG 176 (273)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHhhcCCCCCcchhHHHHH
Confidence 999999999999877788899999999999999999999999999999744 4599999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-----hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-----RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-----~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
|+++|+++++.|++++||+||+|+||+|.|+|...... ....... ...+..++.+|+|+|++++|+++ +...+
T Consensus 177 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s-~~~~~ 255 (273)
T 1ae1_A 177 AINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCF-PAASY 255 (273)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHS-GGGTT
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccC
Confidence 99999999999999999999999999999998654211 1111111 11223457899999999999765 55566
Q ss_pred ccceEe
Q psy4557 946 VNSILI 951 (958)
Q Consensus 946 i~~~~i 951 (958)
++|..+
T Consensus 256 ~tG~~i 261 (273)
T 1ae1_A 256 ITGQII 261 (273)
T ss_dssp CCSCEE
T ss_pred cCCCEE
Confidence 776554
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=327.27 Aligned_cols=240 Identities=21% Similarity=0.306 Sum_probs=203.8
Q ss_pred CCCCCCEEEEEcCC-chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC-CcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSS-SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP-GSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas-~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
..++||+++||||+ +|||+++|++|+++|++|++++|+.++++++.+++.+.+ .++.++++|+++.++++++++++.+
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 45899999999997 699999999999999999999999999999988886554 5789999999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
.+|++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|+|.+.+..|+||++||.++..+.++...|++|
T Consensus 98 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~s 177 (266)
T 3o38_A 98 KAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAA 177 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCTTCHHHHHH
T ss_pred HhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCCCCchHHHH
Confidence 99999999999999888888899999999999999999999999999999865567999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
|+|+++|+++|+.|++++||+||+|+||+|+|+|.......+...... .....+..+|+|+|+.++|+++ +...+++|
T Consensus 178 Kaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~~~dva~~i~~l~s-~~~~~~tG 256 (266)
T 3o38_A 178 KAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSSSELLDRLASDEAFGRAAEPWEVAATIAFLAS-DYSSYMTG 256 (266)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-----------------CCTTSSCCCHHHHHHHHHHHHS-GGGTTCCS
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcC-ccccCccC
Confidence 999999999999999999999999999999999976543222222211 1223457899999999999775 55567777
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..+.
T Consensus 257 ~~i~ 260 (266)
T 3o38_A 257 EVVS 260 (266)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6654
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-37 Score=328.99 Aligned_cols=230 Identities=20% Similarity=0.401 Sum_probs=201.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCC-cEEEEEecC--CCHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKLDV--TIENDVKKVVREVL 788 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv--s~~~~v~~~~~~~~ 788 (958)
..++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...++ ++.++.+|+ ++.++++++++++.
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA 87 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999988888765433 677889999 99999999999999
Q ss_pred HHcCCccEEEEccccC-CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhh
Q psy4557 789 AELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 789 ~~~g~iDilInnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
+.+|++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|+|++ ++.|+|||+||.++..+.++...|+
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~-~~~g~iv~isS~~~~~~~~~~~~Y~ 166 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLK-SDAGSLVFTSSSVGRQGRANWGAYA 166 (252)
T ss_dssp HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-SSSCEEEEECCGGGTSCCTTCHHHH
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHH-CCCCEEEEECChhhccCCCCCchhH
Confidence 9999999999999985 3467889999999999999999999999999999974 4569999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
+||+|+++|+++|+.|+++. ||||+|+||+|+|+|....... ....+..+|+|+|..++|+++ +...+++
T Consensus 167 asK~a~~~l~~~la~e~~~~-irvn~v~PG~v~t~~~~~~~~~--------~~~~~~~~p~dva~~~~~L~s-~~~~~it 236 (252)
T 3f1l_A 167 ASKFATEGMMQVLADEYQQR-LRVNCINPGGTRTAMRASAFPT--------EDPQKLKTPADIMPLYLWLMG-DDSRRKT 236 (252)
T ss_dssp HHHHHHHHHHHHHHHHTTTT-CEEEEEECCSBSSHHHHHHCTT--------CCGGGSBCTGGGHHHHHHHHS-GGGTTCC
T ss_pred HHHHHHHHHHHHHHHHhcCC-cEEEEEecCcccCchhhhhCCc--------cchhccCCHHHHHHHHHHHcC-ccccCCC
Confidence 99999999999999999987 9999999999999975321110 011235789999999999765 5556788
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..+.
T Consensus 237 G~~i~ 241 (252)
T 3f1l_A 237 GMTFD 241 (252)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 77664
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=331.60 Aligned_cols=236 Identities=20% Similarity=0.288 Sum_probs=196.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++||+++||||++|||+++|++|+++|++|+++ .|+.+.+++..+++.+.+.++.++.+|+++.++++++++++.+.
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADK 83 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999998 56677788888888777778889999999999999999999999
Q ss_pred cCCccEEEEccccC-CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-CCCCCChhhhH
Q psy4557 791 LGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-RPFAGLAVYTG 868 (958)
Q Consensus 791 ~g~iDilInnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-~~~~~~~~Y~a 868 (958)
+|++|+||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|.+ .|+||++||.++. .+.++...|++
T Consensus 84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~---~g~iv~isS~~~~~~~~~~~~~Y~a 160 (259)
T 3edm_A 84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAK---GGAIVTFSSQAGRDGGGPGALAYAT 160 (259)
T ss_dssp HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEECCHHHHHCCSTTCHHHHH
T ss_pred hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCEEEEEcCHHhccCCCCCcHHHHH
Confidence 99999999999987 5677889999999999999999999999999999963 5899999999998 78899999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
||+|+++|+++|+.|+++. ||||+|+||+|+|+|......++...... .....+..+|+|+|+.++|+++ +...+++
T Consensus 161 sKaa~~~l~~~la~e~~~~-I~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L~s-~~~~~it 238 (259)
T 3edm_A 161 SKGAVMTFTRGLAKEVGPK-IRVNAVCPGMISTTFHDTFTKPEVRERVAGATSLKREGSSEDVAGLVAFLAS-DDAAYVT 238 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTT-CEEEEEEECCBCC----------------------CCBCHHHHHHHHHHHHS-GGGTTCC
T ss_pred HHHHHHHHHHHHHHHHCCC-CEEEEEEECCCcCcccccccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-ccccCcc
Confidence 9999999999999999987 99999999999999976543222222111 1223457899999999999765 5566788
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..+.
T Consensus 239 G~~i~ 243 (259)
T 3edm_A 239 GACYD 243 (259)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 87664
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=327.04 Aligned_cols=237 Identities=32% Similarity=0.534 Sum_probs=198.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++.+|++++++++++++++.+.+|++|+
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~ 77 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG---DNLYIAQLDVRNRAAIEEMLASLPAEWCNIDI 77 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---TTEEEEECCTTCHHHHHHHHHTSCTTTCCCCE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---CceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 689999999999999999999999999999999998888877763 46888999999999999999999999999999
Q ss_pred EEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 797 LVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 797 lInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
||||||+.. ..++.+.+.++|++++++|+.|++++++.++|+|.++ +.|+|||+||.++..+.++...|++||+|+++
T Consensus 78 lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~ 156 (248)
T 3asu_A 78 LVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINIGSTAGSWPYAGGNVYGATKAFVRQ 156 (248)
T ss_dssp EEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCCTTCHHHHHHHHHHHH
T ss_pred EEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEccchhccCCCCCchHHHHHHHHHH
Confidence 999999873 5677889999999999999999999999999999743 46899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCccc-CCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecCC
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVK-TELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEPP 954 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~-T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p~ 954 (958)
|+++|+.|++++|||||+|+||+|+ |+|......................+|+|+|+.++|+++++...+...+.+.|.
T Consensus 157 ~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~l~s~~~~~~g~~i~v~~~ 236 (248)
T 3asu_A 157 FSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPV 236 (248)
T ss_dssp HHHHHHHHTTTSCCEEEEEEECSBCC----------------------CCBCHHHHHHHHHHHHHSCTTCCCCEEEECCT
T ss_pred HHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCchHHHHHHHhccCCCCHHHHHHHHHHHhcCCccceeeEEEEccc
Confidence 9999999999999999999999999 998642111000000000111234799999999999999888888888999998
Q ss_pred CCC
Q psy4557 955 LAS 957 (958)
Q Consensus 955 ~~~ 957 (958)
.++
T Consensus 237 ~~~ 239 (248)
T 3asu_A 237 TQS 239 (248)
T ss_dssp TCC
T ss_pred ccc
Confidence 654
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=326.16 Aligned_cols=235 Identities=21% Similarity=0.334 Sum_probs=194.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh-hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~-~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+. +++++ .+.+.+.++.++++|++++++++++++++.+.
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (249)
T 2ew8_A 3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRNLGRRVLTVKCDVSQPGDVEAFGKQVIST 79 (249)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHhcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999998 76665 33344567888999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.++ +.|+||++||.++..+.++...|++||
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK 158 (249)
T 2ew8_A 80 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN-GWGRIINLTSTTYWLKIEAYTHYISTK 158 (249)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGGSCCSSCHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcchhhccCCCCchhHHHHH
Confidence 9999999999999877788899999999999999999999999999999744 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCC-CCCCh--hhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLS-HSTDR--DVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~-~~~~~--~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
+|+++|+++++.|++++||+||+|+||+|+|+|.. ..... ....... ....++.+|+|+|+.++|+++ +...+++
T Consensus 159 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~dva~~~~~l~s-~~~~~~t 236 (249)
T 2ew8_A 159 AANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNML-QAIPRLQVPLDLTGAAAFLAS-DDASFIT 236 (249)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECCC------------------CTT-SSSCSCCCTHHHHHHHHHHTS-GGGTTCC
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccchhhHHHHhh-CccCCCCCHHHHHHHHHHHcC-cccCCCC
Confidence 99999999999999999999999999999999865 22111 1111111 123457899999999999765 5556677
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..+.
T Consensus 237 G~~~~ 241 (249)
T 2ew8_A 237 GQTLA 241 (249)
T ss_dssp SCEEE
T ss_pred CcEEE
Confidence 76553
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=332.23 Aligned_cols=239 Identities=23% Similarity=0.333 Sum_probs=207.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++++|++++++++++++++.+.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (262)
T 1zem_A 3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 82 (262)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999998888887766778899999999999999999999999
Q ss_pred CCccEEEEccccC-CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
|++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|.++ +.|+|||+||.++..+.++...|++||
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK 161 (262)
T 1zem_A 83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAGVKGPPNMAAYGTSK 161 (262)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHSCCTTBHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhccCCCCCchHHHHH
Confidence 9999999999987 66778889999999999999999999999999999744 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-------------C-Chh-hhhhhc-cccCCCCCCHHHHHHHH
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-------------T-DRD-VVDKYD-ISKAVPVLTTKEISQSI 934 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-------------~-~~~-~~~~~~-~~~~~~~~~p~~ia~~i 934 (958)
+|+.+|+++++.|++++|||||+|+||+|+|+|.... . .++ ....+. ..+..++.+|+|+|..+
T Consensus 162 ~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v 241 (262)
T 1zem_A 162 GAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVV 241 (262)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHH
T ss_pred HHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence 9999999999999999999999999999999985421 1 111 111111 12234678999999999
Q ss_pred HHHhcCCCCccccceEec
Q psy4557 935 IFALLQPSHSAVNSILIE 952 (958)
Q Consensus 935 ~~~l~~~~~~~i~~~~i~ 952 (958)
+|+++ +...+++|..+.
T Consensus 242 ~~l~s-~~~~~itG~~i~ 258 (262)
T 1zem_A 242 AFLLG-DDSSFMTGVNLP 258 (262)
T ss_dssp HHHHS-GGGTTCCSCEEE
T ss_pred HHHcC-chhcCcCCcEEe
Confidence 99775 555677776653
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=333.42 Aligned_cols=242 Identities=28% Similarity=0.465 Sum_probs=200.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+|+ |+++||||++|||+++|++|+++|++|++++|+.++++++.+++... .++.++.+|++++++++++++++.+.+
T Consensus 18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 95 (272)
T 2nwq_A 18 SHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK-TRVLPLTLDVRDRAAMSAAVDNLPEEF 95 (272)
T ss_dssp ---C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHTCCGGG
T ss_pred CCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4566 99999999999999999999999999999999999999888887544 568889999999999999999999999
Q ss_pred CCccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCc-EEEEecCccCcCCCCCChhhhHH
Q psy4557 792 GHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPG-HILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 792 g~iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g-~IV~isS~~g~~~~~~~~~Y~as 869 (958)
|++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|.|.+. +.| +|||+||.++..+.++...|++|
T Consensus 96 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~~IV~isS~~~~~~~~~~~~Y~as 174 (272)
T 2nwq_A 96 ATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAH-GAGASIVNLGSVAGKWPYPGSHVYGGT 174 (272)
T ss_dssp SSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CTTCEEEEECCGGGTSCCTTCHHHHHH
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCchhccCCCCCchHHHH
Confidence 999999999998763 678889999999999999999999999999999754 357 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+|+++|+++|+.|++++||+||+|+||+|+|+|......................+|+|+|+.++|+++++.......+
T Consensus 175 Kaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~~l~s~~~~~~g~~i 254 (272)
T 2nwq_A 175 KAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMNQPAHLNINSL 254 (272)
T ss_dssp HHHHHHHHHHHHTTCTTSCCEEEEEEECSBC--------------------CCCCBCHHHHHHHHHHHHTSCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccchHHHHHhhccCCCCCHHHHHHHHHHHhCCCccCccceE
Confidence 99999999999999999999999999999999986432110000000001122357999999999999988887788888
Q ss_pred EecCCCC
Q psy4557 950 LIEPPLA 956 (958)
Q Consensus 950 ~i~p~~~ 956 (958)
.|+|...
T Consensus 255 ~v~~~~~ 261 (272)
T 2nwq_A 255 EIMPVSQ 261 (272)
T ss_dssp EEEETTE
T ss_pred EEeeccC
Confidence 8888653
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-37 Score=334.64 Aligned_cols=229 Identities=22% Similarity=0.305 Sum_probs=202.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh-------hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-------RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVR 785 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~-------~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~ 785 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.+ .++++.+++...+.++.++++|++++++++++++
T Consensus 6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 85 (285)
T 3sc4_A 6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVA 85 (285)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 478999999999999999999999999999999999976 5777777777667789999999999999999999
Q ss_pred HHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC-CCCh
Q psy4557 786 EVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-AGLA 864 (958)
Q Consensus 786 ~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-~~~~ 864 (958)
++.+.+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|++ ++.|+|||+||.++..+. ++..
T Consensus 86 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~iv~isS~~~~~~~~~~~~ 164 (285)
T 3sc4_A 86 KTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKG-RDNPHILTLSPPIRLEPKWLRPT 164 (285)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTT-SSSCEEEECCCCCCCSGGGSCSH
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCcEEEEECChhhccCCCCCCc
Confidence 99999999999999999988888899999999999999999999999999999974 456999999999998886 8889
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECC-cccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAG-DVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG-~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
.|++||+|+++|+++|+.|++++|||||+|+|| ++.|+|..... .......+..+|+|+|+.++|+++++.
T Consensus 165 ~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~~~~~~~-------~~~~~~~r~~~pedvA~~~~~l~s~~~- 236 (285)
T 3sc4_A 165 PYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATAAVQNLL-------GGDEAMARSRKPEVYADAAYVVLNKPS- 236 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCHHHHHHH-------TSCCCCTTCBCTHHHHHHHHHHHTSCT-
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccHHHHhhc-------cccccccCCCCHHHHHHHHHHHhCCcc-
Confidence 999999999999999999999999999999999 68998743210 011123467899999999999887665
Q ss_pred ccccceEe
Q psy4557 944 SAVNSILI 951 (958)
Q Consensus 944 ~~i~~~~i 951 (958)
+++|..+
T Consensus 237 -~~tG~~i 243 (285)
T 3sc4_A 237 -SYTGNTL 243 (285)
T ss_dssp -TCCSCEE
T ss_pred -cccceEE
Confidence 7777665
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=335.06 Aligned_cols=236 Identities=16% Similarity=0.141 Sum_probs=200.3
Q ss_pred CCCCCCEEEEEcCCc--hHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~--GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
..++||++|||||++ |||+++|++|+++|++|++++|+.+..+.+.+..... +.+.++++|++++++++++++++.+
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL-GVKLTVPCDVSDAESVDNMFKVLAE 104 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH-TCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 468999999999986 9999999999999999999999976655555444333 3467889999999999999999999
Q ss_pred HcCCccEEEEccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh
Q psy4557 790 ELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~ 865 (958)
.+|++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|.|.+ .|+|||+||.++..+.+++..
T Consensus 105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~---~g~IV~isS~~~~~~~~~~~~ 181 (296)
T 3k31_A 105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN---GGSILTLSYYGAEKVVPHYNV 181 (296)
T ss_dssp HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT---CEEEEEEECGGGTSCCTTTTH
T ss_pred HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCEEEEEEehhhccCCCCchh
Confidence 99999999999999764 67788999999999999999999999999999852 699999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh-hhhh-ccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV-VDKY-DISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~-~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|++||+|+++|+|+|+.|++++|||||+|+||+|+|+|......... .... ......+..+|+|+|++++|+++ +..
T Consensus 182 Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s-~~a 260 (296)
T 3k31_A 182 MGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPLRRNTTLDDVGGAALYLLS-DLG 260 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHS-GGG
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC-Ccc
Confidence 99999999999999999999999999999999999998754321111 1111 11233467899999999999765 556
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..+.
T Consensus 261 ~~itG~~i~ 269 (296)
T 3k31_A 261 RGTTGETVH 269 (296)
T ss_dssp TTCCSCEEE
T ss_pred CCccCCEEE
Confidence 678876654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=329.97 Aligned_cols=239 Identities=22% Similarity=0.299 Sum_probs=204.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHh-hcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL-QNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l-~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ ...+.++.++.+|++++++++++++++.+.
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK 96 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999888887777 333567888999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCcc-CcCCCCCChhhhHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNA-GVRPFAGLAVYTGT 869 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~-g~~~~~~~~~Y~as 869 (958)
+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+ ++.|+||++||.+ +..+.++...|++|
T Consensus 97 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-~~~g~iv~isS~~~~~~~~~~~~~Y~as 175 (267)
T 1vl8_A 97 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRE-SDNPSIINIGSLTVEEVTMPNISAYAAS 175 (267)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CSSCEEEEECCGGGTCCCSSSCHHHHHH
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCcEEEEECCcchhccCCCCChhHHHH
Confidence 999999999999987778889999999999999999999999999999974 4468999999999 88888999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
|+|+++|+++++.|++++||+||+|+||+|+|+|..... .+.....+ ......++.+|+|+|..++|+++ +...+++
T Consensus 176 K~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s-~~~~~it 254 (267)
T 1vl8_A 176 KGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLAS-EEAKYVT 254 (267)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHS-GGGTTCC
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccChHHHHHHHhhCCCCCCcCHHHHHHHHHHHcC-ccccCCc
Confidence 999999999999999999999999999999999854211 11111111 11123457899999999999776 4455677
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..+.
T Consensus 255 G~~i~ 259 (267)
T 1vl8_A 255 GQIIF 259 (267)
T ss_dssp SCEEE
T ss_pred CCeEE
Confidence 66553
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=334.67 Aligned_cols=240 Identities=20% Similarity=0.259 Sum_probs=204.3
Q ss_pred ccCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC--hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHH
Q psy4557 709 VFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR--IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 709 ~~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~--~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
+-..+++||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+.+...+.++.++.+|+++++++++++++
T Consensus 42 ~~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 121 (294)
T 3r3s_A 42 VGSGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHK 121 (294)
T ss_dssp CCCSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 33457899999999999999999999999999999999987 3456777777777777899999999999999999999
Q ss_pred HHHHcCCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh
Q psy4557 787 VLAELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 787 ~~~~~g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~ 865 (958)
+.+.+|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|. ++|+|||+||.++..+.++...
T Consensus 122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~---~~g~Iv~isS~~~~~~~~~~~~ 198 (294)
T 3r3s_A 122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLP---KGASIITTSSIQAYQPSPHLLD 198 (294)
T ss_dssp HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCC---TTCEEEEECCGGGTSCCTTCHH
T ss_pred HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhh---cCCEEEEECChhhccCCCCchH
Confidence 9999999999999999865 46788999999999999999999999999999884 2489999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-CChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-TDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|++||+|+++|+++|+.|++++||+||+|+||+|+|+|.... ...+....+. .....+..+|+|+|+.++|+++ +..
T Consensus 199 Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s-~~~ 277 (294)
T 3r3s_A 199 YAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLAS-QES 277 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGGSTTTTTTSTTSSCBCGGGGHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccc
Confidence 999999999999999999999999999999999999983221 1122111111 1223467899999999999765 556
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..+.
T Consensus 278 ~~itG~~i~ 286 (294)
T 3r3s_A 278 SYVTAEVHG 286 (294)
T ss_dssp TTCCSCEEE
T ss_pred cCCCCCEEE
Confidence 678776653
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=330.27 Aligned_cols=238 Identities=23% Similarity=0.371 Sum_probs=203.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++.+|++++++++++++++.+.
T Consensus 10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999888888777543 567888999999999999999999999
Q ss_pred cCCccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 791 LGHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 791 ~g~iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
+|++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|.|.+. +.|+|||+||.++..+.++...|++|
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~as 168 (267)
T 1iy8_A 90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ-GSGMVVNTASVGGIRGIGNQSGYAAA 168 (267)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSBCSSBHHHHHH
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhhccCCCCCccHHHH
Confidence 9999999999998766 678889999999999999999999999999999744 46899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC--C-Chhhhh----hhc-cccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS--T-DRDVVD----KYD-ISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~--~-~~~~~~----~~~-~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
|+|+++|+++++.|++++||+||+|+||+|.|+|.... . .+.... .+. .....++.+|+|+|+.++|+++ +
T Consensus 169 K~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s-~ 247 (267)
T 1iy8_A 169 KHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLS-D 247 (267)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTS-G
T ss_pred HHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccCCCCCCcCHHHHHHHHHHHcC-c
Confidence 99999999999999999999999999999999985321 0 011011 111 1123457899999999999765 5
Q ss_pred CCccccceEec
Q psy4557 942 SHSAVNSILIE 952 (958)
Q Consensus 942 ~~~~i~~~~i~ 952 (958)
...+++|..+.
T Consensus 248 ~~~~~tG~~i~ 258 (267)
T 1iy8_A 248 DASYVNATVVP 258 (267)
T ss_dssp GGTTCCSCEEE
T ss_pred cccCCCCCEEE
Confidence 45567776553
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=326.43 Aligned_cols=236 Identities=22% Similarity=0.301 Sum_probs=202.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh--HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR--LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~--l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+||+++||||++|||+++|++|+++|++|++++|+.++ ++++.+++...+.++.++.+|++++++++++++++.+.+|
T Consensus 1 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (258)
T 3a28_C 1 MSKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG 80 (258)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 37999999999999999999999999999999999888 8888888876667788999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+++.+|+||++||.++..+.++...|++||+|
T Consensus 81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a 160 (258)
T 3a28_C 81 GFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFA 160 (258)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCCCchhHHHHHHH
Confidence 99999999999877788899999999999999999999999999999754333899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC--------C--hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST--------D--RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~--------~--~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+++|+++++.|++++||+||+|+||+|+|+|..... . ......+. ..+..++.+|+|+|+.++|+++ +
T Consensus 161 ~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s-~ 239 (258)
T 3a28_C 161 VRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIALGRPSVPEDVAGLVSFLAS-E 239 (258)
T ss_dssp HHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCTTSSCBCHHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCCCCCccCHHHHHHHHHHHhC-c
Confidence 999999999999999999999999999999854210 0 11111111 1122357899999999999775 4
Q ss_pred CCccccceEe
Q psy4557 942 SHSAVNSILI 951 (958)
Q Consensus 942 ~~~~i~~~~i 951 (958)
...+++|..+
T Consensus 240 ~~~~~tG~~i 249 (258)
T 3a28_C 240 NSNYVTGQVM 249 (258)
T ss_dssp GGTTCCSCEE
T ss_pred ccCCCCCCEE
Confidence 4566776554
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=328.93 Aligned_cols=238 Identities=23% Similarity=0.343 Sum_probs=203.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEe-cChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~-r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++++|+++||||++|||+++|++|+++|++|++++ |+.+.+++..+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 101 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF 101 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999999998 66677777777776667788999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+. +.|+||++||.++..+.++.+.|++||+
T Consensus 102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asKa 180 (269)
T 3gk3_A 102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNIGSVNGSRGAFGQANYASAKA 180 (269)
T ss_dssp SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHHCCTTBHHHHHHHH
T ss_pred CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEeCChhhccCCCCcchHHHHHH
Confidence 999999999999888888899999999999999999999999999999744 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhh-hhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVV-DKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~-~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+++|+++|+.|++++||+||+|+||+|+|+|.......... .........+..+|+|+|+.++|+++ +...+++|..
T Consensus 181 a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s-~~~~~itG~~ 259 (269)
T 3gk3_A 181 GIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQDVLEAKILPQIPVGRLGRPDEVAALIAFLCS-DDAGFVTGAD 259 (269)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-------CCSGGGCTTSSCBCHHHHHHHHHHHTS-TTCTTCCSCE
T ss_pred HHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhchhHHHHHhhhcCCcCCccCHHHHHHHHHHHhC-CCcCCeeCcE
Confidence 999999999999999999999999999999997654322111 11111223456799999999999765 5556777766
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
+.
T Consensus 260 i~ 261 (269)
T 3gk3_A 260 LA 261 (269)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=331.97 Aligned_cols=236 Identities=19% Similarity=0.222 Sum_probs=202.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEe-cChhhHHHHHHHhh-cCCCcEEEEEecCCCHH------------
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTSLQ-NAPGSIIVKKLDVTIEN------------ 778 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~-r~~~~l~~~~~~l~-~~~~~~~~~~~Dvs~~~------------ 778 (958)
+++||++|||||++|||+++|++|+++|++|++++ |+.++++++.+++. ..+.++.++++|+++.+
T Consensus 6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (291)
T 1e7w_A 6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 85 (291)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccc
Confidence 47899999999999999999999999999999999 99999988888876 45667889999999999
Q ss_pred -----HHHHHHHHHHHHcCCccEEEEccccCCCccccCCC--------------HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4557 779 -----DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYK--------------LEEWNAMINVNIKGVLHCIGNILPSM 839 (958)
Q Consensus 779 -----~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~--------------~~~~~~~~~vN~~g~~~~~~~~l~~m 839 (958)
+++++++++.+.+|++|+||||||+....++.+.+ .++|++++++|+.|++++++.++|.|
T Consensus 86 ~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m 165 (291)
T 1e7w_A 86 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 165 (291)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998777788888 99999999999999999999999999
Q ss_pred HhCCC-----CcEEEEecCccCcCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhh
Q psy4557 840 LHSRR-----PGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVD 914 (958)
Q Consensus 840 ~~~~~-----~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~ 914 (958)
.+++. .|+|||+||.++..+.++...|++||+|+.+|+++|+.|++++||+||+|+||+|+|+| . . .+....
T Consensus 166 ~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~-~-~-~~~~~~ 242 (291)
T 1e7w_A 166 AGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-D-M-PPAVWE 242 (291)
T ss_dssp HTSCGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG-G-S-CHHHHH
T ss_pred HhcCCCCCCCCcEEEEEechhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccCCc-c-C-CHHHHH
Confidence 74331 58999999999999999999999999999999999999999999999999999999998 4 2 222222
Q ss_pred hhcc-ccCC-CCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 915 KYDI-SKAV-PVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 915 ~~~~-~~~~-~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
.+.. .... +..+|+|+|+.++|+++ +...+++|..+.
T Consensus 243 ~~~~~~p~~~r~~~pedvA~~v~~l~s-~~~~~itG~~i~ 281 (291)
T 1e7w_A 243 GHRSKVPLYQRDSSAAEVSDVVIFLCS-SKAKYITGTCVK 281 (291)
T ss_dssp HHHTTCTTTTSCBCHHHHHHHHHHHHS-GGGTTCCSCEEE
T ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHhC-CcccCccCcEEE
Confidence 2211 1223 57899999999999776 555677776654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=325.93 Aligned_cols=236 Identities=24% Similarity=0.324 Sum_probs=203.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++++|+++.++++++++++.+.+|++|
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 81 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 81 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 68999999999999999999999999999999999999888888876667788999999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+++..|+||++||.++..+.++...|++||+|+++
T Consensus 82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~ 161 (256)
T 1geg_A 82 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRG 161 (256)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCchhHHHHHHHHHH
Confidence 99999999877788889999999999999999999999999999754326899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----------Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----------DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----------~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
|+++++.|++++||+||+|+||+|.|+|..... .......+. ..+..++.+|+|+|+.++|+++ +...
T Consensus 162 ~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s-~~~~ 240 (256)
T 1geg_A 162 LTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLAS-PDSD 240 (256)
T ss_dssp HHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHS-GGGT
T ss_pred HHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-cccc
Confidence 999999999999999999999999999853210 111111111 1123457899999999999775 4455
Q ss_pred cccceEec
Q psy4557 945 AVNSILIE 952 (958)
Q Consensus 945 ~i~~~~i~ 952 (958)
+++|..+.
T Consensus 241 ~~tG~~i~ 248 (256)
T 1geg_A 241 YMTGQSLL 248 (256)
T ss_dssp TCCSCEEE
T ss_pred CCCCCEEE
Confidence 67766553
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=326.79 Aligned_cols=236 Identities=25% Similarity=0.419 Sum_probs=198.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh-HHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-LENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~-l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++||+++||||++|||+++|++|+++|++|++++|+.++ ++++.+++... +.++.++.+|++++++++++++++.+.+
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 81 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999887 88887777543 4578889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|+|.++ +.|+||++||.++..+.++...|++||+
T Consensus 82 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~ 160 (260)
T 1x1t_A 82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ-GFGRIINIASAHGLVASANKSAYVAAKH 160 (260)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECcHHhCcCCCCCchHHHHHH
Confidence 999999999999877778889999999999999999999999999999744 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC----------hhhhhhh--ccccCCCCCCHHHHHHHHHHHhc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD----------RDVVDKY--DISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~----------~~~~~~~--~~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
|+++|+++++.|++++||+||+|+||+|+|+|...... .+....+ ......++.+|+|+|+.++|+++
T Consensus 161 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l~s 240 (260)
T 1x1t_A 161 GVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLAS 240 (260)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTCCCBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998654211 0111111 11123467899999999999775
Q ss_pred CCCCccccceEe
Q psy4557 940 QPSHSAVNSILI 951 (958)
Q Consensus 940 ~~~~~~i~~~~i 951 (958)
+...+++|..+
T Consensus 241 -~~~~~~tG~~~ 251 (260)
T 1x1t_A 241 -DAAAQITGTTV 251 (260)
T ss_dssp -GGGTTCCSCEE
T ss_pred -hhhcCCCCCEE
Confidence 44556776554
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=321.46 Aligned_cols=230 Identities=23% Similarity=0.328 Sum_probs=198.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ + +.++.+|++++++++++++++.+.+|
T Consensus 2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~-~~~~~~D~~~~~~~~~~~~~~~~~~g 76 (245)
T 1uls_A 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----G-AHPVVMDVADPASVERGFAEALAHLG 76 (245)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----T-CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----C-CEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 368999999999999999999999999999999999998887776544 2 66788999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+ ++.|+|||+||.+ ..+.++...|++||+|
T Consensus 77 ~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-~~~g~iv~isS~~-~~~~~~~~~Y~asK~a 154 (245)
T 1uls_A 77 RLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMRE-KNPGSIVLTASRV-YLGNLGQANYAASMAG 154 (245)
T ss_dssp SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCEEEEEECCGG-GGCCTTCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCCEEEEEccch-hcCCCCchhHHHHHHH
Confidence 9999999999987777888999999999999999999999999999974 4569999999999 8888999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
+.+|+++++.|++++||+||+|+||+|+|+|..... ......+. .....++.+|+|+|+.++|+++ +...+++|..+
T Consensus 155 ~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s-~~~~~~tG~~~ 232 (245)
T 1uls_A 155 VVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVP-EKVREKAIAATPLGRAGKPLEVAYAALFLLS-DESSFITGQVL 232 (245)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSC-HHHHHHHHHTCTTCSCBCHHHHHHHHHHHHS-GGGTTCCSCEE
T ss_pred HHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcC-HHHHHHHHhhCCCCCCcCHHHHHHHHHHHhC-chhcCCcCCEE
Confidence 999999999999999999999999999999875432 21111111 1123457899999999999776 44556676654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=318.62 Aligned_cols=231 Identities=26% Similarity=0.415 Sum_probs=206.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhh-cCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ-NAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~-~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++. ..+.++.++++|++++++++++++++.+.+|+
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD 80 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 47999999999999999999999999999999999999998888775 44567889999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|+||||||+....++.+.+.++|++++++|+.|++++++.++|+|. + .+|+||+++|..+..+.++.+.|++||+|+
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~-~~~~ii~~sS~~~~~~~~~~~~Y~~sKaa~ 158 (235)
T 3l77_A 81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLK-R-TGGLALVTTSDVSARLIPYGGGYVSTKWAA 158 (235)
T ss_dssp CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHH-H-HTCEEEEECCGGGSSCCTTCHHHHHHHHHH
T ss_pred CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-cCCcEEEEecchhcccCCCcchHHHHHHHH
Confidence 99999999998888889999999999999999999999999999995 2 358999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecC
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEP 953 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p 953 (958)
++|+++++ +...|||||+|+||+|+|+|........ ...+..+|+|+|+.++|+++++....+..+.+.|
T Consensus 159 ~~~~~~l~--~~~~~i~v~~v~PG~v~T~~~~~~~~~~--------~~~~~~~p~dva~~v~~l~~~~~~~~~~~~~~~~ 228 (235)
T 3l77_A 159 RALVRTFQ--IENPDVRFFELRPGAVDTYFGGSKPGKP--------KEKGYLKPDEIAEAVRCLLKLPKDVRVEELMLRS 228 (235)
T ss_dssp HHHHHHHH--HHCTTSEEEEEEECSBSSSTTTCCSCCC--------GGGTCBCHHHHHHHHHHHHTSCTTCCCCEEEECC
T ss_pred HHHHHHHh--hcCCCeEEEEEeCCccccccccccCCcc--------cccCCCCHHHHHHHHHHHHcCCCCCccceEEEee
Confidence 99999994 4478999999999999999976543211 1125689999999999999999998999999999
Q ss_pred CCCC
Q psy4557 954 PLAS 957 (958)
Q Consensus 954 ~~~~ 957 (958)
..++
T Consensus 229 ~~~~ 232 (235)
T 3l77_A 229 VYQR 232 (235)
T ss_dssp TTSC
T ss_pred cccC
Confidence 8765
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=323.06 Aligned_cols=231 Identities=24% Similarity=0.367 Sum_probs=197.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcC--CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
||+++||||++|||+++|++|+++| +.|++++|+.++++++.+++ +.++.++++|++|+++++++++++.+.+|+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---GDRFFYVVGDITEDSVLKQLVNAAVKGHGK 78 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH---GGGEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh---CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999999985 78999999999998888776 357889999999999999999999999999
Q ss_pred ccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 794 IDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 794 iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|+|.+. +|+|||+||.++..+.++.+.|++||+|
T Consensus 79 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~g~iv~isS~~~~~~~~~~~~Y~asK~a 156 (254)
T 3kzv_A 79 IDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKT--NGNVVFVSSDACNMYFSSWGAYGSSKAA 156 (254)
T ss_dssp CCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCSCCCCSSCCSHHHHHHHHH
T ss_pred ccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCeEEEEcCchhccCCCCcchHHHHHHH
Confidence 999999999864 4678899999999999999999999999999999753 3899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--------hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--------RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--------~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+++|+++|+.|+ .|||||+|+||+|+|+|...... ++....+. .....+..+|+|+|++++|+++.+..
T Consensus 157 ~~~~~~~la~e~--~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dva~~v~~L~s~~~~ 234 (254)
T 3kzv_A 157 LNHFAMTLANEE--RQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIP 234 (254)
T ss_dssp HHHHHHHHHHHC--TTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhc--cCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHhcCCcCCcccHHHHHHHHHhhccc
Confidence 999999999998 68999999999999999765321 11111111 22345678999999999998875545
Q ss_pred ccccceEecC
Q psy4557 944 SAVNSILIEP 953 (958)
Q Consensus 944 ~~i~~~~i~p 953 (958)
.+++|..+.-
T Consensus 235 ~~itG~~i~v 244 (254)
T 3kzv_A 235 DGVNGQYLSY 244 (254)
T ss_dssp GGGTTCEEET
T ss_pred CCCCccEEEe
Confidence 7888887753
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=328.28 Aligned_cols=238 Identities=26% Similarity=0.344 Sum_probs=202.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++||+++||||++|||+++|++|+++|++|++++| +.+..+++.+++...+.++.++.+|++++++++++++++.+.+
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 105 (271)
T 4iin_A 26 QFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSD 105 (271)
T ss_dssp CCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999 4566777777787777789999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.++ +.|+||++||.++..+.++.+.|++||+
T Consensus 106 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK~ 184 (271)
T 4iin_A 106 GGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKS-RFGSVVNVASIIGERGNMGQTNYSASKG 184 (271)
T ss_dssp SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHHCCTTCHHHHHHHH
T ss_pred CCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCCEEEEEechhhcCCCCCchHhHHHHH
Confidence 999999999999888888899999999999999999999999999999744 4599999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
|+++|+++++.|++++||+||+|+||+|+|+|...................+..+|+|+|++++|+++ +...+++|..+
T Consensus 185 a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~i~~l~s-~~~~~itG~~i 263 (271)
T 4iin_A 185 GMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDELKADYVKNIPLNRLGSAKEVAEAVAFLLS-DHSSYITGETL 263 (271)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEEECSBCCC------------CGGGCTTCSCBCHHHHHHHHHHHHS-GGGTTCCSCEE
T ss_pred HHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcHHHHHHHHhcCCcCCCcCHHHHHHHHHHHhC-CCcCCCcCCEE
Confidence 99999999999999999999999999999999765432211111111233467899999999999775 44567777665
Q ss_pred c
Q psy4557 952 E 952 (958)
Q Consensus 952 ~ 952 (958)
.
T Consensus 264 ~ 264 (271)
T 4iin_A 264 K 264 (271)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=330.32 Aligned_cols=236 Identities=16% Similarity=0.152 Sum_probs=195.2
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.+++||++|||||+ +|||+++|++|+++|++|++++|+.+..+.+.+.. +..+++.++++|++++++++++++++.+
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLA-EELGAFVAGHCDVADAASIDAVFETLEK 105 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHH-HHHTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH-HhcCCceEEECCCCCHHHHHHHHHHHHH
Confidence 46899999999999 56999999999999999999999965444333322 2234688899999999999999999999
Q ss_pred HcCCccEEEEccccCC----CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh
Q psy4557 790 ELGHIDILVNNAGVMY----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 790 ~~g~iDilInnAG~~~----~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~ 865 (958)
.+|++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|+|.+ .|+|||+||.++..+.+++..
T Consensus 106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~---~g~Iv~isS~~~~~~~~~~~~ 182 (293)
T 3grk_A 106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMAD---GGSILTLTYYGAEKVMPNYNV 182 (293)
T ss_dssp HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT---CEEEEEEECGGGTSBCTTTTH
T ss_pred hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCEEEEEeehhhccCCCchHH
Confidence 9999999999999976 467788999999999999999999999999999962 699999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh-hhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD-VVDKY-DISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~-~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|++||+|+++|+++|+.|++++|||||+|+||+|+|+|........ ..... ......+..+|+|+|++++|+++ +..
T Consensus 183 Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s-~~~ 261 (293)
T 3grk_A 183 MGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTIDEVGDVGLYFLS-DLS 261 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC-ccc
Confidence 9999999999999999999999999999999999999876543321 11111 12234567899999999999765 556
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..+.
T Consensus 262 ~~itG~~i~ 270 (293)
T 3grk_A 262 RSVTGEVHH 270 (293)
T ss_dssp TTCCSCEEE
T ss_pred cCCcceEEE
Confidence 678877664
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=327.26 Aligned_cols=234 Identities=26% Similarity=0.428 Sum_probs=198.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|+++.++++++++++.+.+|
T Consensus 2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 78 (281)
T 3zv4_A 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH---GGNAVGVVGDVRSLQDQKRAAERCLAAFG 78 (281)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---BTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc---CCcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999999999888877654 45788999999999999999999999999
Q ss_pred CccEEEEccccCCCc-cc----cCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhh
Q psy4557 793 HIDILVNNAGVMYFT-LM----EKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 793 ~iDilInnAG~~~~~-~~----~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
++|+||||||+.... .+ .+.+.++|++++++|+.|+++++++++|+|.++ +|+||++||.++..+.++...|+
T Consensus 79 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~~~~~~Y~ 156 (281)
T 3zv4_A 79 KIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSS--RGSVVFTISNAGFYPNGGGPLYT 156 (281)
T ss_dssp CCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCGGGTSSSSSCHHHH
T ss_pred CCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCeEEEEecchhccCCCCCchhH
Confidence 999999999986432 22 245567899999999999999999999999743 48999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh---------hhhhhh-ccccCCCCCCHHHHHHHHHHH
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR---------DVVDKY-DISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~---------~~~~~~-~~~~~~~~~~p~~ia~~i~~~ 937 (958)
+||+|+++|+++|+.|+++. ||||+|+||+|+|+|....... ...... ......+..+|+|+|..++|+
T Consensus 157 asKaa~~~l~~~la~e~~~~-Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL 235 (281)
T 3zv4_A 157 ATKHAVVGLVRQMAFELAPH-VRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFF 235 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-SEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCTTSSCCCGGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-CEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCCCCCCCCHHHHHHHHHHh
Confidence 99999999999999999987 9999999999999986532110 011111 112345678999999999998
Q ss_pred hcCCCCccccceEec
Q psy4557 938 LLQPSHSAVNSILIE 952 (958)
Q Consensus 938 l~~~~~~~i~~~~i~ 952 (958)
++++...+++|..+.
T Consensus 236 ~s~~~~~~itG~~i~ 250 (281)
T 3zv4_A 236 ATRGDSLPATGALLN 250 (281)
T ss_dssp HSTTTSTTCSSCEEE
T ss_pred hcccccccccCcEEE
Confidence 886888888887764
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=326.17 Aligned_cols=235 Identities=26% Similarity=0.362 Sum_probs=200.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++|+||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|++++++++++++++.+.+
T Consensus 1 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (254)
T 1hdc_A 1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999999999998888777665 3468889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+. +.|+||++||.++..+.++...|++||+
T Consensus 78 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK~ 156 (254)
T 1hdc_A 78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAAGLMGLALTSSYGASKW 156 (254)
T ss_dssp SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhhccCCCCchhHHHHHH
Confidence 999999999999877778889999999999999999999999999999754 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCC-CHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVL-TTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~-~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+++|+++++.|++++||+||+|+||+|.|+|...... ....... .....++. +|+|+|+.++|+++ +...+++|.
T Consensus 157 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~p~~~~~~~~~dvA~~v~~l~s-~~~~~~tG~ 234 (254)
T 1hdc_A 157 GVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGI-RQGEGNYPNTPMGRVGNEPGEIAGAVVKLLS-DTSSYVTGA 234 (254)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHTC-CCSTTSCTTSTTSSCB-CHHHHHHHHHHHHS-GGGTTCCSC
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEecccCcCccccccch-hHHHHHHhcCCCCCCCCCHHHHHHHHHHHhC-chhcCCCCC
Confidence 99999999999999999999999999999997532110 0001111 11123456 99999999999776 444566665
Q ss_pred Eec
Q psy4557 950 LIE 952 (958)
Q Consensus 950 ~i~ 952 (958)
.+.
T Consensus 235 ~~~ 237 (254)
T 1hdc_A 235 ELA 237 (254)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=325.55 Aligned_cols=244 Identities=22% Similarity=0.338 Sum_probs=206.8
Q ss_pred cccccCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHH
Q psy4557 706 VNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVV 784 (958)
Q Consensus 706 ~~~~~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~ 784 (958)
.+..+...+.+|+++||||++|||+++|++|+++|++|+++ .|+.+++++..+++...+.++.++.+|+++++++++++
T Consensus 16 ~n~~~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 95 (267)
T 4iiu_A 16 ENLYFQSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVL 95 (267)
T ss_dssp ---------CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred hhhhhccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 34445667899999999999999999999999999999765 57778888888888777788999999999999999999
Q ss_pred HHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 785 REVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 785 ~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
+++.+.+|++|+||||||+....++.+.+.++|++++++|+.|++.+++.+++.|.+.+..|+||++||.++..+.++..
T Consensus 96 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~ 175 (267)
T 4iiu_A 96 EHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRGQV 175 (267)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCCTTCH
T ss_pred HHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCCCCCc
Confidence 99999999999999999998888888999999999999999999999999999997556679999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
.|++||+|+.+|+++|+.|++++||+||+|+||+|+|+|.... ....... ......++.+|+|+|+.++|+++ +..
T Consensus 176 ~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~p~~~~~~~edva~~~~~L~s-~~~ 252 (267)
T 4iiu_A 176 NYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME--ESALKEAMSMIPMKRMGQAEEVAGLASYLMS-DIA 252 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC--HHHHHHHHHTCTTCSCBCHHHHHHHHHHHHS-GGG
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc--HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-Ccc
Confidence 9999999999999999999999999999999999999997643 2222211 22233457899999999999765 555
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..+.
T Consensus 253 ~~itG~~i~ 261 (267)
T 4iiu_A 253 GYVTRQVIS 261 (267)
T ss_dssp TTCCSCEEE
T ss_pred cCccCCEEE
Confidence 678776654
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=326.13 Aligned_cols=238 Identities=24% Similarity=0.341 Sum_probs=204.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEe-cChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~-r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
...++|++|||||++|||+++|++|+++|++|++++ |+.++.++..+++...+.++.++.+|+++.++++++++++.+.
T Consensus 9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (256)
T 3ezl_A 9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE 88 (256)
T ss_dssp ----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999988 6777777777777777778889999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+. +.|+||++||.++..+.++.+.|++||
T Consensus 89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK 167 (256)
T 3ezl_A 89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVER-GWGRIINISSVNGQKGQFGQTNYSTAK 167 (256)
T ss_dssp TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCCGGGSCSCCHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcchhhccCCCCCcccHHHH
Confidence 9999999999999887888899999999999999999999999999999854 459999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
+|+++|+++|+.|++++||+||+|+||+|+|+|...... ...... ......+..+|+|+|+.++|+++ +...+++|.
T Consensus 168 ~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~dva~~~~~l~s-~~~~~~tG~ 245 (256)
T 3ezl_A 168 AGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRP-DVLEKIVATIPVRRLGSPDEIGSIVAWLAS-EESGFSTGA 245 (256)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCH-HHHHHHHHHSTTSSCBCHHHHHHHHHHHHS-GGGTTCCSC
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccCH-HHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-CcccCCcCc
Confidence 999999999999999999999999999999998765322 222221 12233467899999999999765 555677776
Q ss_pred Eec
Q psy4557 950 LIE 952 (958)
Q Consensus 950 ~i~ 952 (958)
.+.
T Consensus 246 ~i~ 248 (256)
T 3ezl_A 246 DFS 248 (256)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=330.84 Aligned_cols=232 Identities=24% Similarity=0.367 Sum_probs=202.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 27 ~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp CCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 35899999999999999999999999999999999999999999999988777789999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+++..|+||++||.++..+.++.+.|++||+
T Consensus 107 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa 186 (301)
T 3tjr_A 107 GGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKY 186 (301)
T ss_dssp SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCchHHHHHHH
Confidence 99999999999998888889999999999999999999999999999986554699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh---------hhhhhhc-cccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR---------DVVDKYD-ISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~---------~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
|+++|+++|+.|++++||+||+|+||+|+|+|....... .....+. .....+..+|+++|+.++.++..+
T Consensus 187 a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~ 266 (301)
T 3tjr_A 187 GVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLTADAILAN 266 (301)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHHHHHHHC----------------------CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccCcEEEEEECCccccccccccccccchhhccccChhhhccccccccCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999986421000 0000000 111224679999999999988776
Q ss_pred CC
Q psy4557 942 SH 943 (958)
Q Consensus 942 ~~ 943 (958)
..
T Consensus 267 ~~ 268 (301)
T 3tjr_A 267 RL 268 (301)
T ss_dssp CS
T ss_pred Ce
Confidence 54
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=322.93 Aligned_cols=227 Identities=16% Similarity=0.134 Sum_probs=184.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++.+..... .+.++.+|++++++++++++++.+.+
T Consensus 23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (260)
T 3gem_A 23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQA-----GAVALYGDFSCETGIMAFIDLLKTQT 97 (260)
T ss_dssp ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHH-----TCEEEECCTTSHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhc-----CCeEEECCCCCHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999987764433332 26678999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+..... .+.+.++|++++++|+.|+++++++++|+|.+ ++.|+|||+||.++..+.++...|++||+
T Consensus 98 g~iD~lv~nAg~~~~~~-~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~-~~~g~iv~isS~~~~~~~~~~~~Y~asKa 175 (260)
T 3gem_A 98 SSLRAVVHNASEWLAET-PGEEADNFTRMFSVHMLAPYLINLHCEPLLTA-SEVADIVHISDDVTRKGSSKHIAYCATKA 175 (260)
T ss_dssp SCCSEEEECCCCCCCCC-TTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-SSSCEEEEECCGGGGTCCSSCHHHHHHHH
T ss_pred CCCCEEEECCCccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcEEEEECChhhcCCCCCcHhHHHHHH
Confidence 99999999999876554 56788999999999999999999999999974 45699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
|+++|+++|+.|+++ +|+||+|+||+|.|++........ .........+..+|+|+|++++|++. ..+++|..+
T Consensus 176 a~~~l~~~la~e~~~-~Irvn~v~PG~v~t~~~~~~~~~~--~~~~~~p~~r~~~~edva~~v~~L~~---~~~itG~~i 249 (260)
T 3gem_A 176 GLESLTLSFAARFAP-LVKVNGIAPALLMFQPKDDAAYRA--NALAKSALGIEPGAEVIYQSLRYLLD---STYVTGTTL 249 (260)
T ss_dssp HHHHHHHHHHHHHTT-TCEEEEEEECTTCC-----------------CCSCCCCCTHHHHHHHHHHHH---CSSCCSCEE
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEeecccccCCCCCHHHHH--HHHhcCCCCCCCCHHHHHHHHHHHhh---CCCCCCCEE
Confidence 999999999999998 799999999999999754221111 11111233457799999999999873 456666554
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=323.95 Aligned_cols=237 Identities=26% Similarity=0.389 Sum_probs=204.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL- 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~- 791 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|++++++++++++++.+.+
T Consensus 6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999999988888887666778899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.++ +.|+||++||.++..+.++...|++||+
T Consensus 86 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~ 164 (260)
T 2ae2_A 86 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISSVSGALAVPYEAVYGATKG 164 (260)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhccCCCCcchHHHHHH
Confidence 999999999999877778889999999999999999999999999999744 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhh---hh-ccccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVD---KY-DISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~---~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
|+++|+++++.|++++||+||+|+||+++|+|..... .+.... .. ......++.+|+|+|+.++|+++ +...++
T Consensus 165 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s-~~~~~~ 243 (260)
T 2ae2_A 165 AMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCF-PAASYV 243 (260)
T ss_dssp HHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHS-GGGTTC
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC-ccccCC
Confidence 9999999999999999999999999999999854211 111111 11 11123457899999999999775 445566
Q ss_pred cceEe
Q psy4557 947 NSILI 951 (958)
Q Consensus 947 ~~~~i 951 (958)
+|..+
T Consensus 244 tG~~~ 248 (260)
T 2ae2_A 244 TGQII 248 (260)
T ss_dssp CSCEE
T ss_pred CCCEE
Confidence 66554
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=330.17 Aligned_cols=238 Identities=22% Similarity=0.291 Sum_probs=203.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh-HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~-l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
..+++||++|||||++|||+++|++|+++|++|++++|+.+. .+++.+.+...+.++.++++|++|+++++++++++.+
T Consensus 42 ~~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 42 SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999998764 5556666666677899999999999999999999999
Q ss_pred HcCCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 790 ELGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 790 ~~g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
.+|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|. ..|+||++||.++..+.++...|++
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~---~~g~iv~isS~~~~~~~~~~~~Y~a 198 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLK---QGDVIINTASIVAYEGNETLIDYSA 198 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCC---TTCEEEEECCTHHHHCCTTCHHHHH
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHh---hCCEEEEEechHhcCCCCCChhHHH
Confidence 9999999999999874 45688899999999999999999999999999984 2589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
||+|+++|+++|+.|++++||+||+|+||+|+|+|............+. .....+..+|+|+|++++|+++ +...+++
T Consensus 199 sKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s-~~~~~it 277 (291)
T 3ijr_A 199 TKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQFGSNVPMQRPGQPYELAPAYVYLAS-SDSSYVT 277 (291)
T ss_dssp HHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSCHHHHHHTTTTSTTSSCBCGGGTHHHHHHHHS-GGGTTCC
T ss_pred HHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCCHHHHHHHHccCCCCCCcCHHHHHHHHHHHhC-CccCCCc
Confidence 9999999999999999999999999999999999864322222222221 1223467899999999999765 5566777
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..+.
T Consensus 278 G~~i~ 282 (291)
T 3ijr_A 278 GQMIH 282 (291)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 76654
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=327.40 Aligned_cols=236 Identities=25% Similarity=0.382 Sum_probs=202.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+ ++.++.+|++++++++++++++.+.+|
T Consensus 26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (276)
T 2b4q_A 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG-DCQAIPADLSSEAGARRLAQALGELSA 104 (276)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS-CEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-ceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999999999988888886544 788889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC---CcEEEEecCccCcCCCCCCh-hhhH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRR---PGHILNISSNAGVRPFAGLA-VYTG 868 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~---~g~IV~isS~~g~~~~~~~~-~Y~a 868 (958)
++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+++. .|+|||+||.++..+.++.. .|++
T Consensus 105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~~~~~~Y~a 184 (276)
T 2b4q_A 105 RLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGP 184 (276)
T ss_dssp CCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCCCSCTTHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCCCCccccHH
Confidence 9999999999987777888999999999999999999999999999975432 28999999999999988888 9999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc---cccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD---ISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~---~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
||+|+++|+++++.|++++||+||+|+||+++|+|...... ....... .....++.+|+|+|+.++|+++. ...+
T Consensus 185 sK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~-~~~~ 262 (276)
T 2b4q_A 185 SKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIAN-DPQALEADSASIPMGRWGRPEEMAALAISLAGT-AGAY 262 (276)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHHHH-CHHHHHHHHHTSTTSSCCCHHHHHHHHHHHHSG-GGTT
T ss_pred HHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhcch-hHHHHHHhhcCCCCCCcCCHHHHHHHHHHHhCc-cccC
Confidence 99999999999999999999999999999999998542110 0111111 11234578999999999997764 4556
Q ss_pred ccceEe
Q psy4557 946 VNSILI 951 (958)
Q Consensus 946 i~~~~i 951 (958)
++|..+
T Consensus 263 ~tG~~i 268 (276)
T 2b4q_A 263 MTGNVI 268 (276)
T ss_dssp CCSCEE
T ss_pred CCCCEE
Confidence 777655
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=328.38 Aligned_cols=236 Identities=24% Similarity=0.362 Sum_probs=200.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
..+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++... +..+..+.+|+++++++++++
T Consensus 5 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~---- 80 (267)
T 3t4x_A 5 HMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVI---- 80 (267)
T ss_dssp CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHH----
T ss_pred ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHH----
Confidence 35689999999999999999999999999999999999999999888887654 346778899999999877654
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
+++|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.++ +.|+||++||.++..+.++...|++
T Consensus 81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~a 159 (267)
T 3t4x_A 81 EKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIASEAAIMPSQEMAHYSA 159 (267)
T ss_dssp HHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGTSCCTTCHHHHH
T ss_pred HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcchhhccCCCcchHHHH
Confidence 568999999999999888888899999999999999999999999999999854 4699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC---------CC-hhhhhhh-c----cccCCCCCCHHHHHHH
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS---------TD-RDVVDKY-D----ISKAVPVLTTKEISQS 933 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~---------~~-~~~~~~~-~----~~~~~~~~~p~~ia~~ 933 (958)
||+|+++|+|+|+.|++++|||||+|+||++.|++.... .. .+..... . .....++.+|+|+|++
T Consensus 160 sKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~ 239 (267)
T 3t4x_A 160 TKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHL 239 (267)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHCTTCSSCSCBCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccCCcccccCccCHHHHHHH
Confidence 999999999999999999999999999999999964321 00 1111111 0 0123467899999999
Q ss_pred HHHHhcCCCCccccceEec
Q psy4557 934 IIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 934 i~~~l~~~~~~~i~~~~i~ 952 (958)
++|+++ +...+++|..+.
T Consensus 240 v~fL~s-~~~~~itG~~i~ 257 (267)
T 3t4x_A 240 VTFLSS-PLSSAINGSALR 257 (267)
T ss_dssp HHHHHS-GGGTTCCSCEEE
T ss_pred HHHHcC-ccccCccCCeEE
Confidence 999665 666788887654
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=337.06 Aligned_cols=236 Identities=20% Similarity=0.296 Sum_probs=205.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC----------hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR----------IDRLENLKTSLQNAPGSIIVKKLDVTIENDVK 781 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~----------~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~ 781 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+++...+.++.++.+|+++.++++
T Consensus 23 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 102 (322)
T 3qlj_A 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAA 102 (322)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 56899999999999999999999999999999999998 77888888888877788999999999999999
Q ss_pred HHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-----CCcEEEEecCccC
Q psy4557 782 KVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR-----RPGHILNISSNAG 856 (958)
Q Consensus 782 ~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~-----~~g~IV~isS~~g 856 (958)
++++++.+.+|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|+|.+.. ..|+|||+||.++
T Consensus 103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~ 182 (322)
T 3qlj_A 103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG 182 (322)
T ss_dssp HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHH
Confidence 99999999999999999999998888889999999999999999999999999999997422 2389999999999
Q ss_pred cCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHH
Q psy4557 857 VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIF 936 (958)
Q Consensus 857 ~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~ 936 (958)
..+.++.+.|++||+|+++|+++|+.|++++||+||+|+|| +.|+|.......... ......+..+|+|+|.+++|
T Consensus 183 ~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~~---~~~~~~~~~~pedva~~v~~ 258 (322)
T 3qlj_A 183 LQGSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMMA---TQDQDFDAMAPENVSPLVVW 258 (322)
T ss_dssp HHCBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC-----------CCTTCGGGTHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhhhh---ccccccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 999987654322111 11122345799999999999
Q ss_pred HhcCCCCccccceEec
Q psy4557 937 ALLQPSHSAVNSILIE 952 (958)
Q Consensus 937 ~l~~~~~~~i~~~~i~ 952 (958)
+++ +...+++|..+.
T Consensus 259 L~s-~~~~~itG~~i~ 273 (322)
T 3qlj_A 259 LGS-AEARDVTGKVFE 273 (322)
T ss_dssp HTS-GGGGGCCSCEEE
T ss_pred HhC-ccccCCCCCEEE
Confidence 664 556677776653
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-36 Score=322.82 Aligned_cols=237 Identities=18% Similarity=0.237 Sum_probs=200.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++.+|++++++++++++++.+.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDL 83 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999999888888777532 236888999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+| +|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.++ +.|+||++||.++..+.++...|++||
T Consensus 84 ~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK 161 (260)
T 2z1n_A 84 GG-ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEK-GWGRMVYIGSVTLLRPWQDLALSNIMR 161 (260)
T ss_dssp TC-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTBHHHHHHT
T ss_pred cC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECchhhcCCCCCCchhHHHH
Confidence 99 9999999999877778899999999999999999999999999999744 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCC----------CCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSH----------STDRDVVDKYD-ISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~----------~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
+|+++|+++++.|++++||+||+|+||+|.|+|... .........+. ..+..++.+|+|+|+.++|+++
T Consensus 162 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~s 241 (260)
T 2z1n_A 162 LPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPEELASVVAFLAS 241 (260)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------CCTTSSCCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhcCCCCCccCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999998651 11110011111 1122356799999999999765
Q ss_pred CCCCccccceEec
Q psy4557 940 QPSHSAVNSILIE 952 (958)
Q Consensus 940 ~~~~~~i~~~~i~ 952 (958)
+...+++|..+.
T Consensus 242 -~~~~~~tG~~i~ 253 (260)
T 2z1n_A 242 -EKASFITGAVIP 253 (260)
T ss_dssp -GGGTTCCSCEEE
T ss_pred -ccccCCCCCEEE
Confidence 445567766553
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=324.47 Aligned_cols=238 Identities=26% Similarity=0.327 Sum_probs=203.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++++|++++++++++++++.+.
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (263)
T 3ai3_A 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSS 82 (263)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999888888777544 557888999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|++|+||||||+....++.+.+.++|++++++|+.|++.++++++|.|.++ +.|+||++||.++..+.++...|++||
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK 161 (263)
T 3ai3_A 83 FGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRAR-GGGAIIHNASICAVQPLWYEPIYNVTK 161 (263)
T ss_dssp HSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECchhhcCCCCCcchHHHHH
Confidence 9999999999999877788889999999999999999999999999999743 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----------Chhhhhhhc-c-ccCCCCCCHHHHHHHHHHHh
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----------DRDVVDKYD-I-SKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----------~~~~~~~~~-~-~~~~~~~~p~~ia~~i~~~l 938 (958)
+|+++|+++++.|++++||+||+|+||+|.|++..... ......... . ....++.+|+|+|+.++|++
T Consensus 162 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~ 241 (263)
T 3ai3_A 162 AALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAPIKRFASPEELANFFVFLC 241 (263)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCTTCSCBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999753210 011111111 1 22345789999999999977
Q ss_pred cCCCCccccceEe
Q psy4557 939 LQPSHSAVNSILI 951 (958)
Q Consensus 939 ~~~~~~~i~~~~i 951 (958)
+ +...+++|..+
T Consensus 242 s-~~~~~~~G~~~ 253 (263)
T 3ai3_A 242 S-ERATYSVGSAY 253 (263)
T ss_dssp S-TTCTTCCSCEE
T ss_pred C-ccccCCCCcEE
Confidence 6 44556666544
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=321.40 Aligned_cols=236 Identities=28% Similarity=0.431 Sum_probs=194.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|+++.++++++++++.+.+|
T Consensus 6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 82 (261)
T 3n74_A 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---GDAALAVAADISKEADVDAAVEAALSKFG 82 (261)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999888776 35688999999999999999999999999
Q ss_pred CccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC---CCcEEEEecCccCcCCCCCChhhhH
Q psy4557 793 HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR---RPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 793 ~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~---~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|+|.+.+ ..|+||++||.++..+.++.+.|++
T Consensus 83 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~a 162 (261)
T 3n74_A 83 KVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNA 162 (261)
T ss_dssp CCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCTTCHHHHH
T ss_pred CCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCCCccHHHH
Confidence 9999999999876 56778889999999999999999999999999997532 2579999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh---hhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR---DVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~---~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
||+|+++|+++|+.|++++||+||+|+||+++|++....... +....+. .....++.+|+|+|++++|+++ +...
T Consensus 163 sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s-~~~~ 241 (261)
T 3n74_A 163 TKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSIPMGRLLKPDDLAEAAAFLCS-PQAS 241 (261)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------------------CTTSSCCCHHHHHHHHHHHTS-GGGT
T ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHHHhhcCCcCCCcCHHHHHHHHHHHcC-Cccc
Confidence 999999999999999999999999999999999987643211 1111111 1123457899999999999764 5666
Q ss_pred cccceEec
Q psy4557 945 AVNSILIE 952 (958)
Q Consensus 945 ~i~~~~i~ 952 (958)
+++|..+.
T Consensus 242 ~itG~~i~ 249 (261)
T 3n74_A 242 MITGVALD 249 (261)
T ss_dssp TCCSCEEE
T ss_pred CcCCcEEE
Confidence 78876654
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-36 Score=334.70 Aligned_cols=228 Identities=22% Similarity=0.320 Sum_probs=200.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh-------HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-------LENLKTSLQNAPGSIIVKKLDVTIENDVKKVV 784 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~-------l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~ 784 (958)
.+|+||++|||||++|||+++|++|+++|++|++++|+.++ ++++.+++...+.++.++++|++|++++++++
T Consensus 41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~ 120 (346)
T 3kvo_A 41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAV 120 (346)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999764 66777788777888999999999999999999
Q ss_pred HHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC--CCC
Q psy4557 785 REVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--FAG 862 (958)
Q Consensus 785 ~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~--~~~ 862 (958)
+++.+.+|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|++ ++.|+|||+||.++..+ .++
T Consensus 121 ~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~-~~~g~IV~iSS~~~~~~~~~~~ 199 (346)
T 3kvo_A 121 EKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKK-SKVAHILNISPPLNLNPVWFKQ 199 (346)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTT-CSSCEEEEECCCCCCCGGGTSS
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-CCCCEEEEECCHHHcCCCCCCC
Confidence 999999999999999999988888899999999999999999999999999999974 45699999999999887 788
Q ss_pred ChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCc-ccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 863 LAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGD-VKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 863 ~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~-v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+..|++||+|+.+|+++|+.|++ .||+||+|+||+ +.|++....... ....+..+|+|+|++++|++++
T Consensus 200 ~~~Y~aSKaal~~l~~~la~e~~-~gIrvn~v~PG~~i~T~~~~~~~~~--------~~~~r~~~pedvA~~v~~L~s~- 269 (346)
T 3kvo_A 200 HCAYTIAKYGMSMYVLGMAEEFK-GEIAVNALWPKTAIHTAAMDMLGGP--------GIESQCRKVDIIADAAYSIFQK- 269 (346)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTT-TTCEEEEEECSBCBCCHHHHHHCC----------CGGGCBCTHHHHHHHHHHHTS-
T ss_pred chHHHHHHHHHHHHHHHHHHHhc-CCcEEEEEeCCCccccHHHHhhccc--------cccccCCCHHHHHHHHHHHHhc-
Confidence 99999999999999999999999 999999999995 999864321110 1123467999999999998876
Q ss_pred CCccccceEe
Q psy4557 942 SHSAVNSILI 951 (958)
Q Consensus 942 ~~~~i~~~~i 951 (958)
..+++|..+
T Consensus 270 -~~~itG~~i 278 (346)
T 3kvo_A 270 -PKSFTGNFV 278 (346)
T ss_dssp -CTTCCSCEE
T ss_pred -CCCCCceEE
Confidence 556666554
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=324.79 Aligned_cols=230 Identities=21% Similarity=0.289 Sum_probs=186.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+.+.+ .+++ +.++.++++|++++++++++++.+.+ +
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~-~ 77 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV---VADL---GDRARFAAADVTDEAAVASALDLAET-M 77 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHH---HHHT---CTTEEEEECCTTCHHHHHHHHHHHHH-H
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHH---HHhc---CCceEEEECCCCCHHHHHHHHHHHHH-h
Confidence 357899999999999999999999999999999999975433 2232 45788999999999999999998877 9
Q ss_pred CCccEEEEccccCCCcc----ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-------CCCcEEEEecCccCcCCC
Q psy4557 792 GHIDILVNNAGVMYFTL----MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS-------RRPGHILNISSNAGVRPF 860 (958)
Q Consensus 792 g~iDilInnAG~~~~~~----~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~-------~~~g~IV~isS~~g~~~~ 860 (958)
|++|+||||||+..... ..+.+.++|++++++|+.|+++++++++|+|.+. ++.|+|||+||.++..+.
T Consensus 78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 157 (257)
T 3tl3_A 78 GTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQ 157 (257)
T ss_dssp SCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCH
T ss_pred CCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCC
Confidence 99999999999875433 2358999999999999999999999999999752 456899999999999999
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccC-CCCCCHHHHHHHHHHHh
Q psy4557 861 AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKA-VPVLTTKEISQSIIFAL 938 (958)
Q Consensus 861 ~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~-~~~~~p~~ia~~i~~~l 938 (958)
++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|...... ...... ..... .++.+|+|+|+.++|++
T Consensus 158 ~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~~~r~~~p~dva~~v~~l~ 236 (257)
T 3tl3_A 158 IGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLPE-EARASLGKQVPHPSRLGNPDEYGALAVHII 236 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---CH-HHHHHHHHTSSSSCSCBCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhccH-HHHHHHHhcCCCCCCccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999765432 222211 11122 56789999999999988
Q ss_pred cCCCCccccceEec
Q psy4557 939 LQPSHSAVNSILIE 952 (958)
Q Consensus 939 ~~~~~~~i~~~~i~ 952 (958)
++ .+++|..|.
T Consensus 237 s~---~~itG~~i~ 247 (257)
T 3tl3_A 237 EN---PMLNGEVIR 247 (257)
T ss_dssp HC---TTCCSCEEE
T ss_pred cC---CCCCCCEEE
Confidence 65 467766553
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=319.51 Aligned_cols=232 Identities=21% Similarity=0.359 Sum_probs=202.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC-CcEEEEEecC--CCHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP-GSIIVKKLDV--TIENDVKKVVREVL 788 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dv--s~~~~v~~~~~~~~ 788 (958)
..++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+ ....++.+|+ ++.++++++++++.
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~ 89 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVE 89 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999988887654 4556666766 99999999999999
Q ss_pred HHcCCccEEEEccccC-CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhh
Q psy4557 789 AELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 789 ~~~g~iDilInnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
+.+|++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|+|. .++.|+||++||.++..+.++.+.|+
T Consensus 90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~~iv~isS~~~~~~~~~~~~Y~ 168 (247)
T 3i1j_A 90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLK-RSEDASIAFTSSSVGRKGRANWGAYG 168 (247)
T ss_dssp HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TSSSEEEEEECCGGGTSCCTTCHHHH
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH-hCCCCeEEEEcchhhcCCCCCcchhH
Confidence 9999999999999986 456788899999999999999999999999999997 44569999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCC-CCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 868 GTKYFIEGISGALRQEVSD-RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~-~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
+||+|+++|+++|+.|+++ .|||||+|+||+|+|+|....... ....+..+|+|+|..++|+++ +...++
T Consensus 169 ~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~~~~~~~~--------~~~~~~~~p~dva~~~~~l~s-~~~~~i 239 (247)
T 3i1j_A 169 VSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMRAQAYPD--------ENPLNNPAPEDIMPVYLYLMG-PDSTGI 239 (247)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHHHHHHSTT--------SCGGGSCCGGGGTHHHHHHHS-GGGTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCccchhcccc--------cCccCCCCHHHHHHHHHHHhC-chhccc
Confidence 9999999999999999987 899999999999999985321110 111245789999999999665 667789
Q ss_pred cceEecC
Q psy4557 947 NSILIEP 953 (958)
Q Consensus 947 ~~~~i~p 953 (958)
+|..|+.
T Consensus 240 tG~~i~~ 246 (247)
T 3i1j_A 240 NGQALNA 246 (247)
T ss_dssp CSCEEEC
T ss_pred cCeeecC
Confidence 9988763
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=323.93 Aligned_cols=248 Identities=25% Similarity=0.367 Sum_probs=197.0
Q ss_pred cccccccCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHH
Q psy4557 704 GTVNIVFGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKK 782 (958)
Q Consensus 704 ~~~~~~~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~ 782 (958)
...|.++.++.++|++|||||++|||+++|++|+++|++|+++ .|+.+.++++.+++...+.++.++.+|+++.+++++
T Consensus 14 ~~~n~~~~~m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 93 (272)
T 4e3z_A 14 GTENLYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAA 93 (272)
T ss_dssp ----------CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CChhhhhhhccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 3445556666789999999999999999999999999999887 788888888888888777889999999999999999
Q ss_pred HHHHHHHHcCCccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCCcEEEEecCccCcCC
Q psy4557 783 VVREVLAELGHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS--RRPGHILNISSNAGVRP 859 (958)
Q Consensus 783 ~~~~~~~~~g~iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~--~~~g~IV~isS~~g~~~ 859 (958)
+++++.+.+|++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|.|.+. +..|+||++||.++..+
T Consensus 94 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 173 (272)
T 4e3z_A 94 MFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILG 173 (272)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHC
T ss_pred HHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccC
Confidence 999999999999999999999764 678889999999999999999999999999999642 34689999999999887
Q ss_pred CC-CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHH
Q psy4557 860 FA-GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 860 ~~-~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~ 937 (958)
.+ ++..|++||+|+++|+++|+.|++++||+||+|+||+|+|++......+...... ......+..+|+|+|++++|+
T Consensus 174 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~edvA~~i~~l 253 (272)
T 4e3z_A 174 SATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGMPEEVADAILYL 253 (272)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC------------------CCTTSSCBCHHHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccCChHHHHHHhhcCCcCCCcCHHHHHHHHHHH
Confidence 66 6788999999999999999999999999999999999999986542221111111 111233567899999999997
Q ss_pred hcCCCCccccceEec
Q psy4557 938 LLQPSHSAVNSILIE 952 (958)
Q Consensus 938 l~~~~~~~i~~~~i~ 952 (958)
++ +...+++|..+.
T Consensus 254 ~s-~~~~~~tG~~i~ 267 (272)
T 4e3z_A 254 LS-PSASYVTGSILN 267 (272)
T ss_dssp HS-GGGTTCCSCEEE
T ss_pred hC-CccccccCCEEe
Confidence 65 555677776553
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=326.68 Aligned_cols=237 Identities=21% Similarity=0.299 Sum_probs=202.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCC---cEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG---SIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~---~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+. ++.++.+|++++++++++++++.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 82 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999988888876555 788999999999999999999999
Q ss_pred HcCCccEEEEccccCCCcc----ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC-CCCh
Q psy4557 790 ELGHIDILVNNAGVMYFTL----MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-AGLA 864 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~----~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-~~~~ 864 (958)
.+|++|+||||||+....+ +.+.+.++|++++++|+.|++.+++.++|.|.+++ |+|||+||.++..+. ++..
T Consensus 83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~~~~~~ 160 (280)
T 1xkq_A 83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSSIVAGPQAQPDFL 160 (280)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGSSSCCCSSH
T ss_pred hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecCccccCCCCCccc
Confidence 9999999999999876655 77889999999999999999999999999997443 899999999999887 8999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Ch-------hhhhhhc-cccCCCCCCHHHHHHHHH
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DR-------DVVDKYD-ISKAVPVLTTKEISQSII 935 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~-------~~~~~~~-~~~~~~~~~p~~ia~~i~ 935 (958)
.|++||+|+++|+++++.|++++||+||+|+||+|+|+|..... .. +...... .....++.+|+|+|+.++
T Consensus 161 ~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~ 240 (280)
T 1xkq_A 161 YYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIIL 240 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999864321 11 0111111 112235789999999999
Q ss_pred HHhcCCCCccccceEe
Q psy4557 936 FALLQPSHSAVNSILI 951 (958)
Q Consensus 936 ~~l~~~~~~~i~~~~i 951 (958)
|+++.+...+++|..+
T Consensus 241 ~l~s~~~~~~~tG~~i 256 (280)
T 1xkq_A 241 FLADRNLSFYILGQSI 256 (280)
T ss_dssp HHHCHHHHTTCCSCEE
T ss_pred HhcCcccccCccCCeE
Confidence 9876431456666544
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=329.27 Aligned_cols=237 Identities=23% Similarity=0.310 Sum_probs=202.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCC---cEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG---SIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~---~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+. ++.++.+|++++++++++++++.+
T Consensus 23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 102 (297)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999988888876555 788999999999999999999999
Q ss_pred HcCCccEEEEccccCCCcc--ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC-CCChhh
Q psy4557 790 ELGHIDILVNNAGVMYFTL--MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-AGLAVY 866 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~--~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-~~~~~Y 866 (958)
.+|++|+||||||+....+ +.+.+.++|++++++|+.|++.++++++|.|.++ + |+|||+||.++..+. ++...|
T Consensus 103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~-g~IV~isS~~~~~~~~~~~~~Y 180 (297)
T 1xhl_A 103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT-K-GEIVNVSSIVAGPQAHSGYPYY 180 (297)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-T-CEEEEECCGGGSSSCCTTSHHH
T ss_pred hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-C-CEEEEEcCchhccCCCCCcchH
Confidence 9999999999999876666 7889999999999999999999999999999754 3 999999999999888 899999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Ch-------hhhhhhc-cccCCCCCCHHHHHHHHHHH
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DR-------DVVDKYD-ISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~-------~~~~~~~-~~~~~~~~~p~~ia~~i~~~ 937 (958)
++||+|+++|+++++.|++++||+||+|+||+|+|+|..... .. +...... .....++.+|+|+|+.++|+
T Consensus 181 ~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l 260 (297)
T 1xhl_A 181 ACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFL 260 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999854321 10 0111111 11223578999999999998
Q ss_pred hcCCCCccccceEe
Q psy4557 938 LLQPSHSAVNSILI 951 (958)
Q Consensus 938 l~~~~~~~i~~~~i 951 (958)
++.+...+++|..+
T Consensus 261 ~s~~~~~~itG~~i 274 (297)
T 1xhl_A 261 ADRNLSSYIIGQSI 274 (297)
T ss_dssp HCHHHHTTCCSCEE
T ss_pred hCCcccCCccCcEE
Confidence 76431456666554
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=325.07 Aligned_cols=237 Identities=18% Similarity=0.250 Sum_probs=198.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh-hhHHHHHHHhh-cCCCcEEEEEecCCC----HHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQ-NAPGSIIVKKLDVTI----ENDVKKVVR 785 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~-~~l~~~~~~l~-~~~~~~~~~~~Dvs~----~~~v~~~~~ 785 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+. ++++++.+++. ..+.++.++++|+++ .++++++++
T Consensus 19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~ 98 (288)
T 2x9g_A 19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIIN 98 (288)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHH
Confidence 357899999999999999999999999999999999998 88888888876 455678899999999 999999999
Q ss_pred HHHHHcCCccEEEEccccCCCccc-----cC-----CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-----CcEEEE
Q psy4557 786 EVLAELGHIDILVNNAGVMYFTLM-----EK-----YKLEEWNAMINVNIKGVLHCIGNILPSMLHSRR-----PGHILN 850 (958)
Q Consensus 786 ~~~~~~g~iDilInnAG~~~~~~~-----~~-----~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~-----~g~IV~ 850 (958)
++.+.+|++|+||||||+....++ .+ .+.++|++++++|+.|++++++.++|.|.+++. .|+||+
T Consensus 99 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~ 178 (288)
T 2x9g_A 99 SCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVN 178 (288)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEE
Confidence 999999999999999999766666 56 788999999999999999999999999974331 589999
Q ss_pred ecCccCcCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCC-CCHH
Q psy4557 851 ISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPV-LTTK 928 (958)
Q Consensus 851 isS~~g~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~-~~p~ 928 (958)
+||.++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|.|+| . . .+.....+. .....+. .+|+
T Consensus 179 isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~-~~~~~~~~~~~~p~~r~~~~pe 255 (288)
T 2x9g_A 179 LCDAMVDQPCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-M-GEEEKDKWRRKVPLGRREASAE 255 (288)
T ss_dssp ECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-S-CHHHHHHHHHTCTTTSSCCCHH
T ss_pred EecccccCCCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-c-ChHHHHHHHhhCCCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999998 3 2 122111111 1122345 7999
Q ss_pred HHHHHHHHHhcCCCCccccceEec
Q psy4557 929 EISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 929 ~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
|+|..++|+++ +...+++|..+.
T Consensus 256 dvA~~v~~l~s-~~~~~itG~~i~ 278 (288)
T 2x9g_A 256 QIADAVIFLVS-GSAQYITGSIIK 278 (288)
T ss_dssp HHHHHHHHHHS-GGGTTCCSCEEE
T ss_pred HHHHHHHHHhC-ccccCccCCEEE
Confidence 99999999775 555677777664
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=326.43 Aligned_cols=237 Identities=26% Similarity=0.368 Sum_probs=204.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+.++.++.+|+++.++++++++++.+.+|
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG 98 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999999888888876667788999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHH--HHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS--MLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~--m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
++|+||||||+....++.+.+.++|++++++|+.|+++++++++|. |.++ +.|+||++||.++..+.++...|++||
T Consensus 99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK 177 (277)
T 2rhc_B 99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLER-GTGRIVNIASTGGKQGVVHAAPYSASK 177 (277)
T ss_dssp SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHH-TEEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhc-CCeEEEEECccccccCCCCCccHHHHH
Confidence 9999999999987777888999999999999999999999999998 8643 458999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----C------hhhhhhhc-cccCCCCCCHHHHHHHHHHHhc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----D------RDVVDKYD-ISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----~------~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
+|+++|+++++.|++++||+||+|+||++.|+|..... . ......+. .....++.+|+|+|++++|+++
T Consensus 178 ~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s 257 (277)
T 2rhc_B 178 HGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIG 257 (277)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999853210 0 11111111 1123457899999999999775
Q ss_pred CCCCccccceEe
Q psy4557 940 QPSHSAVNSILI 951 (958)
Q Consensus 940 ~~~~~~i~~~~i 951 (958)
+...+++|..+
T Consensus 258 -~~~~~~tG~~~ 268 (277)
T 2rhc_B 258 -PGAAAVTAQAL 268 (277)
T ss_dssp -GGGTTCCSCEE
T ss_pred -chhcCCCCcEE
Confidence 44456666544
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=320.31 Aligned_cols=238 Identities=26% Similarity=0.367 Sum_probs=203.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++..+.+|+++.++++++++++.+.+
T Consensus 10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (260)
T 2zat_A 10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLH 89 (260)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999999999888888887666778889999999999999999999999
Q ss_pred CCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|.+. +.|+||++||.++..+.++...|++||
T Consensus 90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK 168 (260)
T 2zat_A 90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVSSVGAYHPFPNLGPYNVSK 168 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTSCCTTBHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEechhhcCCCCCchhHHHHH
Confidence 99999999999864 4567889999999999999999999999999999744 468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-CChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-TDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+|+++|+++++.|++++||+||+|+||++.|+|.... .......... .....++.+|+|+|+.++|+++ +...+++|
T Consensus 169 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~v~~l~s-~~~~~~tG 247 (260)
T 2zat_A 169 TALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCS-EDASYITG 247 (260)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHHHTCSSCBCGGGGHHHHHHHTS-GGGTTCCS
T ss_pred HHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC-cccCCccC
Confidence 9999999999999999999999999999999985421 1111111111 1123457899999999999765 44456666
Q ss_pred eEe
Q psy4557 949 ILI 951 (958)
Q Consensus 949 ~~i 951 (958)
..+
T Consensus 248 ~~~ 250 (260)
T 2zat_A 248 ETV 250 (260)
T ss_dssp CEE
T ss_pred CEE
Confidence 443
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=323.54 Aligned_cols=230 Identities=25% Similarity=0.328 Sum_probs=195.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++++|++++++++++++++.+.+|
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE---AEAIAVVADVSDPKAVEAVFAEALEEFG 79 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC---SSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999988887776653 4688899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.| ++ .|+||++||.++. +.++...|++||+|
T Consensus 80 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~--~g~iv~isS~~~~-~~~~~~~Y~asK~a 155 (263)
T 2a4k_A 80 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-EE--GGSLVLTGSVAGL-GAFGLAHYAAGKLG 155 (263)
T ss_dssp CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-CT--TCEEEEECCCTTC-CHHHHHHHHHCSSH
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-hc--CCEEEEEecchhc-CCCCcHHHHHHHHH
Confidence 99999999999877778889999999999999999999999999999 33 6899999999998 88888999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
+++|+++++.|++++||+||+|+||+|.|+|..... +....... .....++.+|+|+|+.++|+++ +...+++|..+
T Consensus 156 ~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s-~~~~~~tG~~i 233 (263)
T 2a4k_A 156 VVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLP-PWAWEQEVGASPLGRAGRPEEVAQAALFLLS-EESAYITGQAL 233 (263)
T ss_dssp HHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSC-HHHHHHHHHTSTTCSCBCHHHHHHHHHHHHS-GGGTTCCSCEE
T ss_pred HHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcC-HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccCCcCCEE
Confidence 999999999999999999999999999999875432 22111111 1123457899999999999776 44556666554
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=328.91 Aligned_cols=235 Identities=20% Similarity=0.333 Sum_probs=199.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC------------hhhHHHHHHHhhcCCCcEEEEEecCCCHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR------------IDRLENLKTSLQNAPGSIIVKKLDVTIEND 779 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~------------~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~ 779 (958)
.+++||++|||||++|||+++|++|+++|++|++++|+ .+.++++..++...+.++.++++|+++.++
T Consensus 6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAA 85 (287)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHH
Confidence 35899999999999999999999999999999999998 677888887777777889999999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC
Q psy4557 780 VKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP 859 (958)
Q Consensus 780 v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~ 859 (958)
++++++++.+.+|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|+|. +.|+||++||.++..+
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~--~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~---~~g~iv~isS~~~~~~ 160 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLG--AHLPVQAFADAFDVDFVGVINTVHAALPYLT---SGASIITTGSVAGLIA 160 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCC--TTCCTHHHHHHHHHHTHHHHHHHHHHGGGCC---TTCEEEEECCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCccc--CcCCHHHHHHHhhhhhhhhHHHHHHHHHHhh---cCcEEEEeccchhccc
Confidence 9999999999999999999999997654 3478899999999999999999999999883 4589999999998766
Q ss_pred C-----------CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----------Chhh---hhh
Q psy4557 860 F-----------AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----------DRDV---VDK 915 (958)
Q Consensus 860 ~-----------~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----------~~~~---~~~ 915 (958)
. ++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|..... .+.. ...
T Consensus 161 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (287)
T 3pxx_A 161 AAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLA 240 (287)
T ss_dssp HHCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHH
T ss_pred ccccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccchhhhhccccccchhHHHHhh
Confidence 5 677889999999999999999999999999999999999999975310 0000 000
Q ss_pred --hccccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 916 --YDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 916 --~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
.......+..+|+|+|++++|+++ +...+++|..+.
T Consensus 241 ~~~~~~~~~~~~~p~dva~~v~fL~s-~~a~~itG~~i~ 278 (287)
T 3pxx_A 241 FPAMQAMPTPYVEASDISNAVCFLAS-DESRYVTGLQFK 278 (287)
T ss_dssp GGGGCSSSCSCBCHHHHHHHHHHHHS-GGGTTCCSCEEE
T ss_pred hhhhcccCCCCCCHHHHHhhHheecc-hhhcCCCCceEe
Confidence 111112567899999999999765 666788887654
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=319.91 Aligned_cols=236 Identities=28% Similarity=0.378 Sum_probs=178.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|++|+++++++++++.+.+
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999999999999999988777889999999999999999999999999
Q ss_pred CCccEEEEccccC---CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 792 GHIDILVNNAGVM---YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 792 g~iDilInnAG~~---~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
|++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|.+. +.|+||++||.++. ++...|++
T Consensus 85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~---~~~~~Y~a 160 (253)
T 3qiv_A 85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKR-GGGAIVNQSSTAAW---LYSNYYGL 160 (253)
T ss_dssp SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECC--------------C
T ss_pred CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCEEEEECCcccc---CCCchhHH
Confidence 9999999999984 34557788999999999999999999999999999754 46999999999887 45677999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
||+|+++|+++++.|++++||+||+|+||+|.|++.......+..... ......+..+|+|+|+.++|+++ +...+++
T Consensus 161 sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s-~~~~~~t 239 (253)
T 3qiv_A 161 AKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGLPLSRMGTPDDLVGMCLFLLS-DEASWIT 239 (253)
T ss_dssp CHHHHHHHHHHHHHHTTTTTEEEEEEEC-------------------------------CCHHHHHHHHHHS-GGGTTCC
T ss_pred HHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcHHHHHHHhccCCCCCCCCHHHHHHHHHHHcC-ccccCCC
Confidence 999999999999999999999999999999999987643322221111 11123356789999999999765 4555777
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..+.
T Consensus 240 G~~~~ 244 (253)
T 3qiv_A 240 GQIFN 244 (253)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 76654
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=325.92 Aligned_cols=228 Identities=27% Similarity=0.394 Sum_probs=193.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..++||++|||||++|||+++|++|+++|++|++++|+.+.. ......+++|++++++++++++++.+.+
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD----------VNVSDHFKIDVTNEEEVKEAVEKTTKKY 79 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C----------TTSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc----------cCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999999987543 1245678899999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.++ +.|+||++||.++..+.++.+.|++||+
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asKa 158 (269)
T 3vtz_A 80 GRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAI-GHGSIINIASVQSYAATKNAAAYVTSKH 158 (269)
T ss_dssp SCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSBCTTCHHHHHHHH
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhhccCCCCChhHHHHHH
Confidence 999999999999888888899999999999999999999999999999744 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-------C---hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-------D---RDVVDKY-DISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-------~---~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
|+++|+++|+.|+++ ||+||+|+||+|+|+|..... . ......+ ......+..+|+|+|++++|+++
T Consensus 159 a~~~l~~~la~e~~~-~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s- 236 (269)
T 3vtz_A 159 ALLGLTRSVAIDYAP-KIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLAS- 236 (269)
T ss_dssp HHHHHHHHHHHHHTT-TEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhcC-CCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-
Confidence 999999999999998 999999999999999853210 0 1111111 11233467899999999999765
Q ss_pred CCCccccceEec
Q psy4557 941 PSHSAVNSILIE 952 (958)
Q Consensus 941 ~~~~~i~~~~i~ 952 (958)
+...+++|..+.
T Consensus 237 ~~~~~itG~~i~ 248 (269)
T 3vtz_A 237 DRSSFITGACLT 248 (269)
T ss_dssp GGGTTCCSCEEE
T ss_pred CccCCCcCcEEE
Confidence 555677776553
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=328.63 Aligned_cols=236 Identities=19% Similarity=0.224 Sum_probs=201.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEe-cChhhHHHHHHHhh-cCCCcEEEEEecCCCHH------------
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTSLQ-NAPGSIIVKKLDVTIEN------------ 778 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~-r~~~~l~~~~~~l~-~~~~~~~~~~~Dvs~~~------------ 778 (958)
.++||++|||||++|||+++|++|+++|++|++++ |+.++++++.+++. ..+.++.++++|+++.+
T Consensus 43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 122 (328)
T 2qhx_A 43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 122 (328)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CC
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccc
Confidence 37899999999999999999999999999999999 99999998888875 44567889999999999
Q ss_pred -----HHHHHHHHHHHHcCCccEEEEccccCCCccccCCC--------------HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4557 779 -----DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYK--------------LEEWNAMINVNIKGVLHCIGNILPSM 839 (958)
Q Consensus 779 -----~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~--------------~~~~~~~~~vN~~g~~~~~~~~l~~m 839 (958)
+++++++++.+.+|++|+||||||+....++.+.+ .++|++++++|+.|++++++.++|.|
T Consensus 123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m 202 (328)
T 2qhx_A 123 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 202 (328)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998777777888 99999999999999999999999999
Q ss_pred HhCCC-----CcEEEEecCccCcCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhh
Q psy4557 840 LHSRR-----PGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVD 914 (958)
Q Consensus 840 ~~~~~-----~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~ 914 (958)
.+++. .|+|||+||.++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+| ... +....
T Consensus 203 ~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~-~~~--~~~~~ 279 (328)
T 2qhx_A 203 AGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-DMP--PAVWE 279 (328)
T ss_dssp HHSCGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCC-CSC--HHHHH
T ss_pred HhcCCcCCCCCcEEEEECchhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCCc-ccc--HHHHH
Confidence 75431 58999999999999999999999999999999999999999999999999999999999 322 22222
Q ss_pred hhc-cccCC-CCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 915 KYD-ISKAV-PVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 915 ~~~-~~~~~-~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
.+. ..... ++.+|+|+|+.++|+++ +...+++|..+.
T Consensus 280 ~~~~~~p~~~r~~~pedvA~~v~~l~s-~~~~~itG~~i~ 318 (328)
T 2qhx_A 280 GHRSKVPLYQRDSSAAEVSDVVIFLCS-SKAKYITGTCVK 318 (328)
T ss_dssp HHHTTCTTTTSCBCHHHHHHHHHHHHS-GGGTTCCSCEEE
T ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHhC-ccccCccCcEEE
Confidence 111 11223 57899999999999775 555677776654
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=319.84 Aligned_cols=235 Identities=26% Similarity=0.352 Sum_probs=201.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++++++++++++++.+.+
T Consensus 2 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (253)
T 1hxh_A 2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999999999888887776 3568889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+ ++ |+||++||.++..+.++...|++||+
T Consensus 79 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-~~-g~iv~isS~~~~~~~~~~~~Y~~sK~ 156 (253)
T 1hxh_A 79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE-TG-GSIINMASVSSWLPIEQYAGYSASKA 156 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-TC-EEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHH-cC-CEEEEEcchhhcCCCCCCccHHHHHH
Confidence 99999999999987778889999999999999999999999999999974 34 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC--CcEEEEEECCcccCCCCCCCCChhhhhh-hc----cccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 872 FIEGISGALRQEVSDR--NIKVTCIQAGDVKTELLSHSTDRDVVDK-YD----ISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 872 a~~~l~~~la~el~~~--gIrv~~v~PG~v~T~~~~~~~~~~~~~~-~~----~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
|+++|+++++.|++++ ||+||+|+||+|.|+|............ .. .....++.+|+|+|+.++|+++ +...
T Consensus 157 a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s-~~~~ 235 (253)
T 1hxh_A 157 AVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFLAS-DESS 235 (253)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBTTTBTTCCEECHHHHHHHHHHHHS-GGGT
T ss_pred HHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhhhHHHHhhhhccCccCCCCCHHHHHHHHHHHcC-cccc
Confidence 9999999999999988 9999999999999998542111111111 11 1122356799999999999776 4455
Q ss_pred cccceEec
Q psy4557 945 AVNSILIE 952 (958)
Q Consensus 945 ~i~~~~i~ 952 (958)
+++|..+.
T Consensus 236 ~~tG~~~~ 243 (253)
T 1hxh_A 236 VMSGSELH 243 (253)
T ss_dssp TCCSCEEE
T ss_pred CCCCcEEE
Confidence 67665543
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=320.85 Aligned_cols=238 Identities=24% Similarity=0.306 Sum_probs=195.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH-c
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE-L 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~-~ 791 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++++|++++++++++++++.+. +
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 81 (260)
T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQ 81 (260)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999999999999999998888888665667889999999999999999999886 9
Q ss_pred CCccEEEEccc--cC-----CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 792 GHIDILVNNAG--VM-----YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 792 g~iDilInnAG--~~-----~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
|++|+|||||| +. ...++.+.+.++|++++++|+.|++++++.++|.|.++ +.|+|||+||.++..+. +..
T Consensus 82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~-~~~ 159 (260)
T 2qq5_A 82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPA-GQGLIVVISSPGSLQYM-FNV 159 (260)
T ss_dssp TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGG-TCCEEEEECCGGGTSCC-SSH
T ss_pred CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhc-CCcEEEEEcChhhcCCC-CCC
Confidence 99999999995 32 24567788889999999999999999999999999743 46999999999988754 468
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhh--hh-hc-c-ccCCCCCCHHHHHHHHHHHhc
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVV--DK-YD-I-SKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~--~~-~~-~-~~~~~~~~p~~ia~~i~~~l~ 939 (958)
.|++||+|+++|+++|+.|++++||+||+|+||+|+|+|.......... .. .. . ....+..+|+|+|..++|+++
T Consensus 160 ~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~va~~v~~l~s 239 (260)
T 2qq5_A 160 PYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALAT 239 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC----------------------CHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccccccchhHHHHHHhhhccCCCHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999996542111100 00 00 0 011123589999999999887
Q ss_pred CCCCccccceEec
Q psy4557 940 QPSHSAVNSILIE 952 (958)
Q Consensus 940 ~~~~~~i~~~~i~ 952 (958)
.+...+++|..+.
T Consensus 240 ~~~~~~itG~~i~ 252 (260)
T 2qq5_A 240 DPNILSLSGKVLP 252 (260)
T ss_dssp CTTGGGGTTCEEE
T ss_pred Ccccccccceeec
Confidence 6655688887664
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=316.40 Aligned_cols=230 Identities=27% Similarity=0.399 Sum_probs=199.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.. .+.++.+|++++++++++++++.+.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~ 79 (260)
T 1nff_A 3 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD---AARYVHLDVTQPAQWKAAVDTAVTAF 79 (260)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG---GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc---CceEEEecCCCHHHHHHHHHHHHHHc
Confidence 458899999999999999999999999999999999999888887777643 47788999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.++ +.|+||++||.++..+.++...|++||+
T Consensus 80 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~ 158 (260)
T 1nff_A 80 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEGLAGTVACHGYTATKF 158 (260)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEeehhhcCCCCCchhHHHHHH
Confidence 999999999999877778889999999999999999999999999999744 4689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
|+++|+++++.|++++||+||+|+||+|.|++.. ..... +......+..+|+|+|+.++|+++. ...+++|..+
T Consensus 159 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-~~~~~----~~~~~~~~~~~~~dvA~~v~~l~s~-~~~~~~G~~~ 232 (260)
T 1nff_A 159 AVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD-WVPED----IFQTALGRAAEPVEVSNLVVYLASD-ESSYSTGAEF 232 (260)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT-TSCTT----CSCCSSSSCBCHHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred HHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc-cchhh----HHhCccCCCCCHHHHHHHHHHHhCc-cccCCcCCEE
Confidence 9999999999999999999999999999999864 11111 1111223567999999999998764 4455665444
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=321.68 Aligned_cols=237 Identities=25% Similarity=0.351 Sum_probs=190.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHh---hcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL---QNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l---~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++ ...+.++.++.+|++++++++++++++.+
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999998888877 33345788899999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCC----CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccC-cCCCCCCh
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKY----KLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAG-VRPFAGLA 864 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~----~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g-~~~~~~~~ 864 (958)
.+|++|+||||||+....++.+. +.++|++++++|+.|++++++.++|.|.++ + |+||++||.++ ..+.++..
T Consensus 83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~-g~iv~isS~~~~~~~~~~~~ 160 (278)
T 1spx_A 83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-K-GEIVNISSIASGLHATPDFP 160 (278)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T-CEEEEECCTTSSSSCCTTSH
T ss_pred HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc-C-CeEEEEecccccccCCCCcc
Confidence 99999999999999776677777 999999999999999999999999999743 3 89999999999 88899999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC--Chhh------hhhhc-cccCCCCCCHHHHHHHHH
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST--DRDV------VDKYD-ISKAVPVLTTKEISQSII 935 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~--~~~~------~~~~~-~~~~~~~~~p~~ia~~i~ 935 (958)
.|++||+|+++|+++++.|++++||+||+|+||+|.|+|..... .... ..... ..+..++.+|+|+|+.++
T Consensus 161 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~ 240 (278)
T 1spx_A 161 YYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIA 240 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCCCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999865321 1111 11111 112345789999999999
Q ss_pred HHhcCCCCccccceEe
Q psy4557 936 FALLQPSHSAVNSILI 951 (958)
Q Consensus 936 ~~l~~~~~~~i~~~~i 951 (958)
|+++.+...+++|..+
T Consensus 241 ~l~s~~~~~~~tG~~~ 256 (278)
T 1spx_A 241 FLADRKTSSYIIGHQL 256 (278)
T ss_dssp HHHCHHHHTTCCSCEE
T ss_pred HHcCccccCcccCcEE
Confidence 9876443322666544
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=317.40 Aligned_cols=231 Identities=21% Similarity=0.334 Sum_probs=195.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++ +++.+++. . .++++|++++++++++++++.+.+|
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~----~-~~~~~D~~~~~~~~~~~~~~~~~~g 76 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIG----G-AFFQVDLEDERERVRFVEEAAYALG 76 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHT----C-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhh----C-CEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999887 76666663 3 6788999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+ ++.|+|||+||.++..+.++...|++||+|
T Consensus 77 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~-~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a 155 (256)
T 2d1y_A 77 RVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRK-VGGGAIVNVASVQGLFAEQENAAYNASKGG 155 (256)
T ss_dssp CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-TTCEEEEEECCGGGTSBCTTBHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCcEEEEEccccccCCCCCChhHHHHHHH
Confidence 9999999999987778889999999999999999999999999999974 446999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----C-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----T-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
+++|+++++.|++++||+||+|+||++.|+|.... . ..+....+. .....++.+|+|+|++++|+++. ...++
T Consensus 156 ~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~s~-~~~~~ 234 (256)
T 2d1y_A 156 LVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASE-KASFI 234 (256)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSSCBCHHHHHHHHHHHHSG-GGTTC
T ss_pred HHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-hhcCC
Confidence 99999999999999999999999999999975321 0 111111111 11223578999999999998764 34566
Q ss_pred cceEe
Q psy4557 947 NSILI 951 (958)
Q Consensus 947 ~~~~i 951 (958)
+|..+
T Consensus 235 ~G~~~ 239 (256)
T 2d1y_A 235 TGAIL 239 (256)
T ss_dssp CSCEE
T ss_pred CCCEE
Confidence 66444
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=317.67 Aligned_cols=237 Identities=14% Similarity=0.173 Sum_probs=201.6
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCC-cEEEEEecCCCHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 712 ~~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
.+++||+++||||+ +|||+++|++|+++|++|++++|+.+..+.+.+.....+. ++.++++|+++.++++++++++.
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 46899999999999 7799999999999999999999997666665555544443 68899999999999999999999
Q ss_pred HHcCCccEEEEccccCC----CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 789 AELGHIDILVNNAGVMY----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~----~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
+.+|++|+||||||+.. ..++.+.+.++|++++++|+.|++.+++.++|+|. ++|+||++||.++..+.++.+
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~g~iv~isS~~~~~~~~~~~ 159 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMT---EGGSIVTLTYLGGELVMPNYN 159 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCT---TCEEEEEEECGGGTSCCTTTH
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcC---CCceEEEEecccccccCCCcc
Confidence 99999999999999976 46678899999999999999999999999999885 358999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh-hhhhhc-cccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD-VVDKYD-ISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~-~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.|++||+|+++|+++|+.|++++||+||+|+||+|+|+|........ ...... .....+..+|+|+|+.++|+++ +.
T Consensus 160 ~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~~l~s-~~ 238 (266)
T 3oig_A 160 VMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFS-DM 238 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHS-GG
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC-Cc
Confidence 99999999999999999999999999999999999999876543321 111111 1223457899999999999776 44
Q ss_pred CccccceEec
Q psy4557 943 HSAVNSILIE 952 (958)
Q Consensus 943 ~~~i~~~~i~ 952 (958)
..+++|..+.
T Consensus 239 ~~~~tG~~i~ 248 (266)
T 3oig_A 239 SRGITGENLH 248 (266)
T ss_dssp GTTCCSCEEE
T ss_pred hhcCcCCEEE
Confidence 5667776553
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=318.44 Aligned_cols=234 Identities=25% Similarity=0.351 Sum_probs=198.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
|+||+++||||++|||+++|++|+++|++|++++|+.+ ++..+++...+.++.++.+|++++++++++++++.+.+|+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGG 79 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999876 5555666655667888999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+. +.|+||++||.++..+.++...|++||+|+
T Consensus 80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~ 158 (255)
T 2q2v_A 80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR-NWGRIINIASVHGLVGSTGKAAYVAAKHGV 158 (255)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTSCCTTBHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcCchhccCCCCchhHHHHHHHH
Confidence 9999999999877778889999999999999999999999999999754 469999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhh---h----hhh-c-cccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDV---V----DKY-D-ISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~---~----~~~-~-~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
++|+++++.|++++||+||+|+||+|.|+|...... ... . ..+ . .....++.+|+|+|+.++|+++. .
T Consensus 159 ~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~-~ 237 (255)
T 2q2v_A 159 VGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSE-A 237 (255)
T ss_dssp HHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHHTTTCTTCCCBCHHHHHHHHHHHTSG-G
T ss_pred HHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccccccccchHHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCC-c
Confidence 999999999999999999999999999998542110 000 0 111 1 11234578999999999997764 4
Q ss_pred CccccceEe
Q psy4557 943 HSAVNSILI 951 (958)
Q Consensus 943 ~~~i~~~~i 951 (958)
..+++|..+
T Consensus 238 ~~~~tG~~~ 246 (255)
T 2q2v_A 238 GSQVRGAAW 246 (255)
T ss_dssp GTTCCSCEE
T ss_pred cCCCCCCEE
Confidence 456666544
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=320.50 Aligned_cols=233 Identities=20% Similarity=0.254 Sum_probs=194.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcC-CCcEEEEEecCCCH----HHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNA-PGSIIVKKLDVTIE----NDVKKVVRE 786 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~----~~v~~~~~~ 786 (958)
.++||+++||||++|||+++|++|+++|++|++++| +.++++++.+++... +.++.++.+|+++. +++++++++
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 87 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDC 87 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHH
Confidence 468999999999999999999999999999999999 888888888887654 56788999999999 999999999
Q ss_pred HHHHcCCccEEEEccccCCCccccCCCH-----------HHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC------cEEE
Q psy4557 787 VLAELGHIDILVNNAGVMYFTLMEKYKL-----------EEWNAMINVNIKGVLHCIGNILPSMLHSRRP------GHIL 849 (958)
Q Consensus 787 ~~~~~g~iDilInnAG~~~~~~~~~~~~-----------~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~------g~IV 849 (958)
+.+.+|++|+||||||+....++.+.+. ++|++++++|+.|++++++.++|.|. + +. |+||
T Consensus 88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~-~~~~~~~~g~iv 165 (276)
T 1mxh_A 88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQG-E-GGAWRSRNLSVV 165 (276)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC---------CCCEEEE
T ss_pred HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHh-c-CCCCCCCCcEEE
Confidence 9999999999999999987777778888 99999999999999999999999986 3 34 8999
Q ss_pred EecCccCcCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCC-CCCH
Q psy4557 850 NISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVP-VLTT 927 (958)
Q Consensus 850 ~isS~~g~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~-~~~p 927 (958)
++||.++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|.|+ . .. .+.....+. .....+ ..+|
T Consensus 166 ~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~-~~-~~~~~~~~~~~~p~~r~~~~~ 242 (276)
T 1mxh_A 166 NLCDAMTDLPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P-AM-PQETQEEYRRKVPLGQSEASA 242 (276)
T ss_dssp EECCGGGGSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S-SS-CHHHHHHHHTTCTTTSCCBCH
T ss_pred EECchhhcCCCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c-cC-CHHHHHHHHhcCCCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999 2 21 222111111 112234 7899
Q ss_pred HHHHHHHHHHhcCCCCccccceEe
Q psy4557 928 KEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 928 ~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
+|+|+.++|+++ +...+++|..+
T Consensus 243 ~dva~~v~~l~s-~~~~~~tG~~~ 265 (276)
T 1mxh_A 243 AQIADAIAFLVS-KDAGYITGTTL 265 (276)
T ss_dssp HHHHHHHHHHHS-GGGTTCCSCEE
T ss_pred HHHHHHHHHHhC-ccccCccCcEE
Confidence 999999999775 44556776554
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=319.25 Aligned_cols=237 Identities=20% Similarity=0.258 Sum_probs=201.4
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChhhH-HHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRIDRL-ENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 712 ~~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~~l-~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
.+++||+++||||+ +|||+++|++|+++|++|++++|+.+.. ++..+++.+ .+.++.++++|+++.++++++++++
T Consensus 16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (267)
T 3gdg_A 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDV 95 (267)
T ss_dssp HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHH
Confidence 46899999999999 9999999999999999999999886554 555555543 3567889999999999999999999
Q ss_pred HHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC--CCChh
Q psy4557 788 LAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF--AGLAV 865 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~--~~~~~ 865 (958)
.+.+|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|+|.+. +.|+||++||.++..+. ++...
T Consensus 96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~~~ 174 (267)
T 3gdg_A 96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKER-GTGSLVITASMSGHIANFPQEQTS 174 (267)
T ss_dssp HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCCSSSCCHH
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHc-CCceEEEEccccccccCCCCCCCc
Confidence 9999999999999999888888899999999999999999999999999999754 46899999999998765 57899
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
|++||+|+++|+++|+.|+++. |+||+|+||+|+|+|...... .....+ ......+..+|+|+|+.++|+++ +...
T Consensus 175 Y~~sK~a~~~~~~~la~e~~~~-i~v~~v~PG~v~t~~~~~~~~-~~~~~~~~~~~~~r~~~~~dva~~~~~l~s-~~~~ 251 (267)
T 3gdg_A 175 YNVAKAGCIHMARSLANEWRDF-ARVNSISPGYIDTGLSDFVPK-ETQQLWHSMIPMGRDGLAKELKGAYVYFAS-DAST 251 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-CEEEEEEECCEECSCGGGSCH-HHHHHHHTTSTTSSCEETHHHHHHHHHHHS-TTCT
T ss_pred chHHHHHHHHHHHHHHHHhccC-cEEEEEECCccccchhhhCCH-HHHHHHHhcCCCCCCcCHHHHHhHhheeec-Cccc
Confidence 9999999999999999999988 999999999999999764422 222222 22233456789999999999765 5667
Q ss_pred cccceEec
Q psy4557 945 AVNSILIE 952 (958)
Q Consensus 945 ~i~~~~i~ 952 (958)
+++|..|.
T Consensus 252 ~itG~~i~ 259 (267)
T 3gdg_A 252 YTTGADLL 259 (267)
T ss_dssp TCCSCEEE
T ss_pred cccCCEEE
Confidence 78876653
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=316.99 Aligned_cols=236 Identities=28% Similarity=0.346 Sum_probs=205.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++||+++||||++|||+++|++|+++|++|+++ .|+.+.++++.+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 83 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999885 677888888888888777889999999999999999999998776
Q ss_pred C------CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh
Q psy4557 792 G------HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 792 g------~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~ 865 (958)
+ ++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|. +.|+||++||.++..+.++...
T Consensus 84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~---~~~~iv~isS~~~~~~~~~~~~ 160 (255)
T 3icc_A 84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLR---DNSRIINISSAATRISLPDFIA 160 (255)
T ss_dssp HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEE---EEEEEEEECCGGGTSCCTTBHH
T ss_pred cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhC---CCCEEEEeCChhhccCCCCcch
Confidence 4 599999999998878888999999999999999999999999999883 3589999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh--ccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY--DISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~--~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|++||+|+++|+++|+.|++++||+||+|+||+|+|+|............. ......+..+|+|+|+.++|+++ +..
T Consensus 161 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s-~~~ 239 (255)
T 3icc_A 161 YSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAFNRLGEVEDIADTAAFLAS-PDS 239 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHS-GGG
T ss_pred hHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhccCCcCCCCCHHHHHHHHHHHhC-ccc
Confidence 999999999999999999999999999999999999998765332221111 12223467899999999999765 556
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..+.
T Consensus 240 ~~~tG~~i~ 248 (255)
T 3icc_A 240 RWVTGQLID 248 (255)
T ss_dssp TTCCSCEEE
T ss_pred CCccCCEEE
Confidence 678877664
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=326.08 Aligned_cols=227 Identities=24% Similarity=0.364 Sum_probs=192.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.+.+++ ...+.+|+++.++++++++++.+.+|
T Consensus 25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~-----------~~~~~~Dv~~~~~~~~~~~~~~~~~g 93 (266)
T 3uxy_A 25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA-----------DLHLPGDLREAAYADGLPGAVAAGLG 93 (266)
T ss_dssp -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCC-----------SEECCCCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHh-----------hhccCcCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999998654321 13457899999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|.++ +.|+||++||.++..+.++...|++||+|
T Consensus 94 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~~~~~~~Y~asKaa 172 (266)
T 3uxy_A 94 RLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAA-GGGAIVNVASCWGLRPGPGHALYCLTKAA 172 (266)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTBCCTTBHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHHhCCCCCCChHHHHHHHH
Confidence 99999999999888888999999999999999999999999999999754 46999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-----C-hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-----D-RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-----~-~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
+++|+++|+.|++++||+||+|+||+|+|+|..... . ....... ......+..+|+|+|++++|+++ +...+
T Consensus 173 ~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s-~~~~~ 251 (266)
T 3uxy_A 173 LASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPLGRIAEPEDIADVVLFLAS-DAARY 251 (266)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHS-GGGTT
T ss_pred HHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-chhcC
Confidence 999999999999999999999999999999853210 1 0000111 11223457899999999999765 55567
Q ss_pred ccceEec
Q psy4557 946 VNSILIE 952 (958)
Q Consensus 946 i~~~~i~ 952 (958)
++|..+.
T Consensus 252 itG~~i~ 258 (266)
T 3uxy_A 252 LCGSLVE 258 (266)
T ss_dssp CCSCEEE
T ss_pred CcCCEEE
Confidence 7776654
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=319.15 Aligned_cols=234 Identities=19% Similarity=0.266 Sum_probs=199.4
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
...+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|+++.++++++++++ +
T Consensus 24 ~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~-~ 99 (281)
T 3ppi_A 24 TIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL---GNRAEFVSTNVTSEDSVLAAIEAA-N 99 (281)
T ss_dssp CCGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHH-T
T ss_pred hhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHH-H
Confidence 345689999999999999999999999999999999999999999888877 356889999999999999999999 8
Q ss_pred HcCCccEEEEc-cccCCCccc-----cCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-----CCCcEEEEecCccCcC
Q psy4557 790 ELGHIDILVNN-AGVMYFTLM-----EKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS-----RRPGHILNISSNAGVR 858 (958)
Q Consensus 790 ~~g~iDilInn-AG~~~~~~~-----~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~-----~~~g~IV~isS~~g~~ 858 (958)
.++++|++||| ||+.....+ .+.+.++|++++++|+.|++++++.++|.|.+. ++.|+||++||.++..
T Consensus 100 ~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 179 (281)
T 3ppi_A 100 QLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE 179 (281)
T ss_dssp TSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS
T ss_pred HhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC
Confidence 89999999999 665544433 367899999999999999999999999999741 4568999999999999
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccC-CCCCCHHHHHHHHHH
Q psy4557 859 PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKA-VPVLTTKEISQSIIF 936 (958)
Q Consensus 859 ~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~-~~~~~p~~ia~~i~~ 936 (958)
+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|....... ....+. .... .+..+|+|+|++++|
T Consensus 180 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~-~~~~~~~~~~~~~~~~~pedvA~~v~~ 258 (281)
T 3ppi_A 180 GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESVGEE-ALAKFAANIPFPKRLGTPDEFADAAAF 258 (281)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTTCHH-HHHHHHHTCCSSSSCBCHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcccHH-HHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987654322 212111 1122 467899999999999
Q ss_pred HhcCCCCccccceEe
Q psy4557 937 ALLQPSHSAVNSILI 951 (958)
Q Consensus 937 ~l~~~~~~~i~~~~i 951 (958)
++++ .+++|..+
T Consensus 259 l~s~---~~~tG~~i 270 (281)
T 3ppi_A 259 LLTN---GYINGEVM 270 (281)
T ss_dssp HHHC---SSCCSCEE
T ss_pred HHcC---CCcCCcEE
Confidence 8874 35666554
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=321.26 Aligned_cols=236 Identities=23% Similarity=0.373 Sum_probs=200.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh-HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~-l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.++||+++||||++|||+++|++|+++|++|++++|+.+. ++++.+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999999998654 566667776666788899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC-ChhhhHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG-LAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~-~~~Y~asK 870 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|. +.|+||++||.++..+.+. ...|++||
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~---~~g~iv~isS~~~~~~~~~~~~~Y~asK 182 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLE---IGGRLILMGSITGQAKAVPKHAVYSGSK 182 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSC---TTCEEEEECCGGGTCSSCSSCHHHHHHH
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCCeEEEEechhhccCCCCCCcchHHHH
Confidence 9999999999998777788899999999999999999999999999982 4589999999999887764 89999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-----C-----Chhhhhhhc---cccCCCCCCHHHHHHHHHHH
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-----T-----DRDVVDKYD---ISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-----~-----~~~~~~~~~---~~~~~~~~~p~~ia~~i~~~ 937 (958)
+|+++|+++++.|++++||+||+|+||+|.|+|.... . ..+....+. .....++.+|+|+|+.++|+
T Consensus 183 ~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l 262 (283)
T 1g0o_A 183 GAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFL 262 (283)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999974321 0 111111111 12234578999999999997
Q ss_pred hcCCCCccccceEec
Q psy4557 938 LLQPSHSAVNSILIE 952 (958)
Q Consensus 938 l~~~~~~~i~~~~i~ 952 (958)
++ +...+++|..+.
T Consensus 263 ~s-~~~~~itG~~i~ 276 (283)
T 1g0o_A 263 AS-NDGGWVTGKVIG 276 (283)
T ss_dssp HS-GGGTTCCSCEEE
T ss_pred hC-ccccCcCCCEEE
Confidence 76 445577776553
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=317.84 Aligned_cols=237 Identities=22% Similarity=0.357 Sum_probs=195.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh-hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~-~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+.+|+++||||++|||+++|++|+++|++|++++|+. +.++.+.+.+...+.++.++++|++++++++++++++.+.+
T Consensus 4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 83 (264)
T 3i4f_A 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHF 83 (264)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred ccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999997765 44556666666556689999999999999999999999999
Q ss_pred CCccEEEEccc--cCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCc-cC-cCCCCCChhhh
Q psy4557 792 GHIDILVNNAG--VMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSN-AG-VRPFAGLAVYT 867 (958)
Q Consensus 792 g~iDilInnAG--~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~-~g-~~~~~~~~~Y~ 867 (958)
|++|+|||||| .....++.+.+.++|++++++|+.|++.+++.++|.|.++ +.|+||++||. ++ ..+.++.+.|+
T Consensus 84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~iss~~~~~~~~~~~~~~Y~ 162 (264)
T 3i4f_A 84 GKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINYGFQGADSAPGWIYRSAFA 162 (264)
T ss_dssp SCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTTGGGCCCCTTCHHHH
T ss_pred CCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCeEEEEeechhcccCCCCCCchhH
Confidence 99999999999 4455678889999999999999999999999999999754 46999999998 44 56778889999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
+||+|+++|+++|+.|++++||+||+|+||+|.|+|...... ....... .....+..+|+|+|+.++|+++ +...++
T Consensus 163 asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~~~~~~~~p~~r~~~~~dva~~v~~l~s-~~~~~i 240 (264)
T 3i4f_A 163 AAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATIQ-EARQLKEHNTPIGRSGTGEDIARTISFLCE-DDSDMI 240 (264)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCHH-HHHHC--------CCCCHHHHHHHHHHHHS-GGGTTC
T ss_pred HHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhccH-HHHHHHhhcCCCCCCcCHHHHHHHHHHHcC-cccCCC
Confidence 999999999999999999999999999999999998765321 1111111 1223457899999999999776 445577
Q ss_pred cceEec
Q psy4557 947 NSILIE 952 (958)
Q Consensus 947 ~~~~i~ 952 (958)
+|..+.
T Consensus 241 tG~~i~ 246 (264)
T 3i4f_A 241 TGTIIE 246 (264)
T ss_dssp CSCEEE
T ss_pred CCcEEE
Confidence 776654
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=317.75 Aligned_cols=237 Identities=20% Similarity=0.288 Sum_probs=199.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHH---cCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVT---LGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~---~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
.+|+||+++||||++|||+++|++|++ +|++|++++|+.++++++.+++... +.++.++.+|+++++++++++++
T Consensus 2 ~~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (259)
T 1oaa_A 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 357899999999999999999999999 8999999999999999888887543 45788999999999999999999
Q ss_pred HHH--HcCCcc--EEEEccccCCC--ccccC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEecCccCcC
Q psy4557 787 VLA--ELGHID--ILVNNAGVMYF--TLMEK-YKLEEWNAMINVNIKGVLHCIGNILPSMLHS-RRPGHILNISSNAGVR 858 (958)
Q Consensus 787 ~~~--~~g~iD--ilInnAG~~~~--~~~~~-~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~-~~~g~IV~isS~~g~~ 858 (958)
+.+ .+|++| +||||||+... .++.+ .+.++|++++++|+.|++++++.++|.|.++ .+.|+|||+||.++..
T Consensus 82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~ 161 (259)
T 1oaa_A 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence 998 778999 99999998643 45667 7899999999999999999999999999743 1468999999999999
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----CChhhhhhhc-cccCCCCCCHHHHHHH
Q psy4557 859 PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----TDRDVVDKYD-ISKAVPVLTTKEISQS 933 (958)
Q Consensus 859 ~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~~~~~~~~~~-~~~~~~~~~p~~ia~~ 933 (958)
+.++...|++||+|+++|+++|+.|+++ ||||+|+||+|+|+|.... ..++....+. ..+..++.+|+|+|+.
T Consensus 162 ~~~~~~~Y~asKaa~~~~~~~la~e~~~--i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~ 239 (259)
T 1oaa_A 162 PYKGWGLYCAGKAARDMLYQVLAAEEPS--VRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQK 239 (259)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHCTT--EEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhCCC--ceEEEecCCCcCcchHHHHhhccCChhHHHHHHHhhhcCCcCCHHHHHHH
Confidence 9999999999999999999999999974 9999999999999985421 0111111111 1123467899999999
Q ss_pred HHHHhcCCCCccccceEec
Q psy4557 934 IIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 934 i~~~l~~~~~~~i~~~~i~ 952 (958)
++|+++. ..+++|..+.
T Consensus 240 v~~l~~~--~~~itG~~i~ 256 (259)
T 1oaa_A 240 LLGLLQK--DTFQSGAHVD 256 (259)
T ss_dssp HHHHHHH--CCSCTTEEEE
T ss_pred HHHHHhh--ccccCCcEEe
Confidence 9998874 3577887663
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=311.09 Aligned_cols=224 Identities=20% Similarity=0.334 Sum_probs=189.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|+++.++++++++++.+. .|+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~---~d~ 75 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL---SNNVGYRARDLASHQEVEQLFEQLDSI---PST 75 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC---SSCCCEEECCTTCHHHHHHHHHSCSSC---CSE
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---hhccCeEeecCCCHHHHHHHHHHHhhc---CCE
Confidence 68999999999999999999999999999999999988887766 356778899999999999988876543 399
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHH
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l 876 (958)
||||||+....++.+.+.++|++++++|+.|++++++.++|.|.++ +++||++||.++..+.++.+.|++||+|+++|
T Consensus 76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~ 153 (230)
T 3guy_A 76 VVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQ--PVNVVMIMSTAAQQPKAQESTYCAVKWAVKGL 153 (230)
T ss_dssp EEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--CCEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred EEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEeecccCCCCCCCchhHHHHHHHHHH
Confidence 9999999888888899999999999999999999999999999632 35999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecCCCC
Q psy4557 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEPPLA 956 (958)
Q Consensus 877 ~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p~~~ 956 (958)
+++|+.|++++||+||+|+||+|+|+|....... ....+..+|+|+|+.++|+++++...+++|..+.|...
T Consensus 154 ~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--------~~~~~~~~~~dvA~~i~~l~~~~~~~~itg~~~~~~~~ 225 (230)
T 3guy_A 154 IESVRLELKGKPMKIIAVYPGGMATEFWETSGKS--------LDTSSFMSAEDAALMIHGALANIGNGYVSDITVNREGH 225 (230)
T ss_dssp HHHHHHHTTTSSCEEEEEEECCC------------------------CCCHHHHHHHHHHHCCEETTEEEEEEEEEC---
T ss_pred HHHHHHHHHhcCeEEEEEECCcccChHHHhcCCC--------CCcccCCCHHHHHHHHHHHHhCcCCCCccceeecCCCC
Confidence 9999999999999999999999999987543211 11235789999999999999989999999999988653
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-35 Score=318.41 Aligned_cols=236 Identities=14% Similarity=0.134 Sum_probs=197.7
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.+++||+++||||+ +|||+++|++|+++|++|++++|+. .++..+++.+..+++.++.+|+++.++++++++++.+
T Consensus 22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 99 (280)
T 3nrc_A 22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGK 99 (280)
T ss_dssp CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHH
Confidence 46899999999988 8899999999999999999999997 2233334433334578899999999999999999999
Q ss_pred HcCCccEEEEccccCCC----ccccC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 790 ELGHIDILVNNAGVMYF----TLMEK-YKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~----~~~~~-~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
.+|++|+||||||+... .++.+ .+.++|++++++|+.|++++++.++|.|.+. .|+||++||.++..+.++..
T Consensus 100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~g~iv~isS~~~~~~~~~~~ 177 (280)
T 3nrc_A 100 VWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNR--NASMVALTYIGAEKAMPSYN 177 (280)
T ss_dssp HCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--TCEEEEEECGGGTSCCTTTH
T ss_pred HcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCeEEEEeccccccCCCCch
Confidence 99999999999998754 34445 8999999999999999999999999999633 69999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh-hhhhhc-cccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD-VVDKYD-ISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~-~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.|++||+|+++|+++|+.|++++||+||+|+||+|+|+|........ ...... .....+..+|+|+|+.++|+++ +.
T Consensus 178 ~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s-~~ 256 (280)
T 3nrc_A 178 TMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPLKKNVDIMEVGNTVAFLCS-DM 256 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHSTTCSCCCHHHHHHHHHHTTS-GG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-cc
Confidence 99999999999999999999999999999999999999976543321 111111 1233467899999999999665 55
Q ss_pred CccccceEec
Q psy4557 943 HSAVNSILIE 952 (958)
Q Consensus 943 ~~~i~~~~i~ 952 (958)
..+++|..+.
T Consensus 257 ~~~~tG~~i~ 266 (280)
T 3nrc_A 257 ATGITGEVVH 266 (280)
T ss_dssp GTTCCSCEEE
T ss_pred cCCcCCcEEE
Confidence 6677777664
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=321.82 Aligned_cols=234 Identities=26% Similarity=0.434 Sum_probs=196.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCC--cEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG--SIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.+++||++||||||+|||+++|++|+++|++|++++|+.++++++.+++...+. ++.++.+|+++.++++++++.+.+
T Consensus 4 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (319)
T 3ioy_A 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEA 83 (319)
T ss_dssp CCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999888865544 788999999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-----CCCcEEEEecCccCcCCCCCCh
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS-----RRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~-----~~~g~IV~isS~~g~~~~~~~~ 864 (958)
.+|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.++ ++.|+||++||.++..+.++.+
T Consensus 84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~~~~ 163 (319)
T 3ioy_A 84 RFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPG 163 (319)
T ss_dssp HTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCSSSH
T ss_pred hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCCCCH
Confidence 99999999999999888889999999999999999999999999999999753 2469999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh-hhh----h-----hc-ccc-CCCCCCHHHHHH
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD-VVD----K-----YD-ISK-AVPVLTTKEISQ 932 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~-~~~----~-----~~-~~~-~~~~~~p~~ia~ 932 (958)
.|++||+|+++|+++|+.|+.++||+|++|+||+|+|+|........ ... . .. ... .....+|+++|+
T Consensus 164 ~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~vA~ 243 (319)
T 3ioy_A 164 IYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVERLAGVHEFGMEPDVIGA 243 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-----------------------------CCGGGSSBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhcccccchhHHHHHHHHHhhhcCCCHHHHHH
Confidence 99999999999999999999999999999999999999875421110 000 0 00 000 001269999999
Q ss_pred HHHHHhcCCCCcc
Q psy4557 933 SIIFALLQPSHSA 945 (958)
Q Consensus 933 ~i~~~l~~~~~~~ 945 (958)
.++.++.++....
T Consensus 244 ~~~~al~~~~~~i 256 (319)
T 3ioy_A 244 RVIEAMKANRLHI 256 (319)
T ss_dssp HHHHHHHTTCSEE
T ss_pred HHHHHHHcCCCEE
Confidence 9999988776433
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=314.58 Aligned_cols=222 Identities=23% Similarity=0.357 Sum_probs=190.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.+... ..++.++++|++++++++++++++.+.+|
T Consensus 25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 95 (260)
T 3un1_A 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA---------DPDIHTVAGDISKPETADRIVREGIERFG 95 (260)
T ss_dssp HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS---------STTEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc---------cCceEEEEccCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999999999999999999865422 23588899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC--CCCChhhhHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--FAGLAVYTGTK 870 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~--~~~~~~Y~asK 870 (958)
++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.++ +.|+||++||.++..+ .++...|++||
T Consensus 96 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~~~~~~~~~Y~~sK 174 (260)
T 3un1_A 96 RIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSITTSLVDQPMVGMPSALASLTK 174 (260)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCTTTTSCBTTCCCHHHHHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEechhhccCCCCCccHHHHHHH
Confidence 99999999999888888899999999999999999999999999999854 4699999999988754 44568899999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
+|+++|+++|+.|++++||+||+|+||+|.|+|.... ..... ......+..+|+|+|++++|+ +...+++|.
T Consensus 175 aa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~----~~~~~~~~~p~~r~~~~~dva~av~~L---~~~~~itG~ 247 (260)
T 3un1_A 175 GGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE----THSTLAGLHPVGRMGEIRDVVDAVLYL---EHAGFITGE 247 (260)
T ss_dssp HHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG----GHHHHHTTSTTSSCBCHHHHHHHHHHH---HHCTTCCSC
T ss_pred HHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH----HHHHHhccCCCCCCcCHHHHHHHHHHh---cccCCCCCc
Confidence 9999999999999999999999999999999986431 11111 122344678999999999997 334566665
Q ss_pred Ee
Q psy4557 950 LI 951 (958)
Q Consensus 950 ~i 951 (958)
.+
T Consensus 248 ~i 249 (260)
T 3un1_A 248 IL 249 (260)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=316.46 Aligned_cols=235 Identities=26% Similarity=0.357 Sum_probs=199.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.. ++.++++|++++++++++++++.+.+|
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~D~~d~~~v~~~~~~~~~~~g 85 (263)
T 3ak4_A 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLEN---GGFAVEVDVTKRASVDAAMQKAIDALG 85 (263)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTT---CCEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999888877665532 567889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+++..|+||++||.++..+.++...|++||+|
T Consensus 86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a 165 (263)
T 3ak4_A 86 GFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFA 165 (263)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCchhHHHHHHH
Confidence 99999999999877778889999999999999999999999999999855436999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-----C-----hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-----D-----RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-----~-----~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+++|+++++.|++++||+||+|+||+|.|+|..... . ......+. .....++.+|+|+|+.++|+++.
T Consensus 166 ~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~- 244 (263)
T 3ak4_A 166 VFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFLASD- 244 (263)
T ss_dssp HHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSG-
T ss_pred HHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-
Confidence 999999999999999999999999999999853210 0 11111111 11234578999999999998764
Q ss_pred CCccccceEe
Q psy4557 942 SHSAVNSILI 951 (958)
Q Consensus 942 ~~~~i~~~~i 951 (958)
...+++|..+
T Consensus 245 ~~~~~tG~~~ 254 (263)
T 3ak4_A 245 AARFMTGQGI 254 (263)
T ss_dssp GGTTCCSCEE
T ss_pred cccCCCCCEE
Confidence 4456666544
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=306.21 Aligned_cols=233 Identities=24% Similarity=0.425 Sum_probs=209.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-------eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA-------KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga-------~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
++|+++||||++|||+++|++|+++|+ +|++++|+.++++++.+++...+.++.++.+|++++++++++++++
T Consensus 1 ~~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (244)
T 2bd0_A 1 MKHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI 80 (244)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence 378999999999999999999999999 9999999999999888888766677889999999999999999999
Q ss_pred HHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhh
Q psy4557 788 LAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
.+.+|++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|+|.+. +.|+||++||.++..+.++...|+
T Consensus 81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~~~~~~~~~~~~Y~ 159 (244)
T 2bd0_A 81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVAATKAFRHSSIYC 159 (244)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTCHHHH
T ss_pred HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEEecchhcCCCCCCchhH
Confidence 9999999999999999877778889999999999999999999999999999743 468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
+||+++++|+++++.|++++||+|++|+||+|.|+|........ ..+..+|+|+|+.++++++.+......
T Consensus 160 ~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~~~g 230 (244)
T 2bd0_A 160 MSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDEM---------QALMMMPEDIAAPVVQAYLQPSRTVVE 230 (244)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCSTT---------GGGSBCHHHHHHHHHHHHTSCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccccc---------cccCCCHHHHHHHHHHHHhCCccccch
Confidence 99999999999999999999999999999999999875432111 124689999999999999888877788
Q ss_pred ceEecCCCCC
Q psy4557 948 SILIEPPLAS 957 (958)
Q Consensus 948 ~~~i~p~~~~ 957 (958)
.+.+.|..++
T Consensus 231 ~~~~~~~~~~ 240 (244)
T 2bd0_A 231 EIILRPTSGD 240 (244)
T ss_dssp EEEEEETTCC
T ss_pred heEEeccccc
Confidence 8888887664
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=317.50 Aligned_cols=227 Identities=24% Similarity=0.366 Sum_probs=185.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.++++|+++||||++|||+++|++|+++|++|++++|+.++++ .+.++++|++|+++++++++++.+.+
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~Dl~d~~~v~~~~~~~~~~~ 85 (253)
T 2nm0_A 17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE-----------GFLAVKCDITDTEQVEQAYKEIEETH 85 (253)
T ss_dssp ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-----------TSEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc-----------cceEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999999876432 25678899999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++.++++++|.|.++ +.|+||++||.++..+.++...|++||+
T Consensus 86 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK~ 164 (253)
T 2nm0_A 86 GPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLISSVVGLLGSAGQANYAASKA 164 (253)
T ss_dssp CSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECchhhCCCCCCcHHHHHHHH
Confidence 999999999999877778888999999999999999999999999999743 4699999999999988888999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+++|+++++.|++++||+||+|+||+|+|+|....... ....+ ......++.+|+|+|+.++|++++ ...+++|..
T Consensus 165 a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~-~~~~~~~~~p~~~~~~p~dvA~~i~~l~s~-~~~~~tG~~ 242 (253)
T 2nm0_A 165 GLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTDE-QRANIVSQVPLGRYARPEEIAATVRFLASD-DASYITGAV 242 (253)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEEEECSBCC----------CHHHHHTTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCE
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCHH-HHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCCcCcE
Confidence 999999999999999999999999999999986542211 11111 111234578999999999997764 445677765
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
+.
T Consensus 243 i~ 244 (253)
T 2nm0_A 243 IP 244 (253)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=315.65 Aligned_cols=227 Identities=22% Similarity=0.327 Sum_probs=184.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..+++|+++||||++|||+++|++|+++|++|++++|+.++++++ ..+.+|++++++++++++++.+.+
T Consensus 11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~-----------~~~~~D~~~~~~~~~~~~~~~~~~ 79 (247)
T 1uzm_A 11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-----------FGVEVDVTDSDAVDRAFTAVEEHQ 79 (247)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS-----------EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHh-----------cCeeccCCCHHHHHHHHHHHHHHc
Confidence 457899999999999999999999999999999999987654321 137899999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+. +.|+||++||.++..+.++...|++||+
T Consensus 80 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~ 158 (247)
T 1uzm_A 80 GPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVSGLWGIGNQANYAASKA 158 (247)
T ss_dssp SSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCCC-----CCHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEECCHhhccCCCCChhHHHHHH
Confidence 999999999999877778889999999999999999999999999999744 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+++|+++++.|++++||+||+|+||+++|+|..... ........ .....++.+|+|+|+.++|+++ +...+++|..
T Consensus 159 a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s-~~~~~~~G~~ 236 (247)
T 1uzm_A 159 GVIGMARSIARELSKANVTANVVAPGYIDTDMTRALD-ERIQQGALQFIPAKRVGTPAEVAGVVSFLAS-EDASYISGAV 236 (247)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSC-HHHHHHHGGGCTTCSCBCHHHHHHHHHHHHS-GGGTTCCSCE
T ss_pred HHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhcC-HHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-ccccCCcCCE
Confidence 9999999999999999999999999999999854321 11111111 1123457899999999999776 5456677765
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
+.
T Consensus 237 i~ 238 (247)
T 1uzm_A 237 IP 238 (247)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=314.54 Aligned_cols=244 Identities=28% Similarity=0.491 Sum_probs=208.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC--CcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP--GSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+ .++.++.+|+++.++++++++++.+.
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999988888876543 46788899999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEecCccCc--CCCCCChhhh
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRR-PGHILNISSNAGV--RPFAGLAVYT 867 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~-~g~IV~isS~~g~--~~~~~~~~Y~ 867 (958)
++++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+.+. .|+||++||.++. .+.++...|+
T Consensus 109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~ 188 (279)
T 1xg5_A 109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYS 188 (279)
T ss_dssp HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHHHH
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccCCCCCCchhH
Confidence 999999999999987777888899999999999999999999999999985442 4899999999988 5677888999
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 868 GTKYFIEGISGALRQEVS--DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 868 asKaa~~~l~~~la~el~--~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
+||+|+++|+++++.|++ +.||+||+|+||+|.|+|...................+..+|+|+|+.++|+++.+....
T Consensus 189 ~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~i~~l~~~~~~~~ 268 (279)
T 1xg5_A 189 ATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAHIQ 268 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHHC---CBCHHHHHHHHHHHHHSCTTEE
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccChhHHhhhcccccCCCHHHHHHHHHHHhcCCcceE
Confidence 999999999999999998 899999999999999998421111111111111123457899999999999999888888
Q ss_pred ccceEecCCCC
Q psy4557 946 VNSILIEPPLA 956 (958)
Q Consensus 946 i~~~~i~p~~~ 956 (958)
+..+.|+|..+
T Consensus 269 ~g~i~i~~~~~ 279 (279)
T 1xg5_A 269 IGDIQMRPTGS 279 (279)
T ss_dssp EEEEEEEETTC
T ss_pred eeeEEEccCCC
Confidence 88888998764
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-35 Score=315.71 Aligned_cols=231 Identities=27% Similarity=0.366 Sum_probs=197.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++. .+.++++|++++++++++++++.+.+|
T Consensus 6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (270)
T 1yde_A 6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP----GAVFILCDVTQEDDVKTLVSETIRRFG 81 (270)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT----TEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----CCeEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999988887776653 377889999999999999999999999
Q ss_pred CccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 793 HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 793 ~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|+|.+. .|+||++||.++..+.++...|++||+
T Consensus 82 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~g~iv~isS~~~~~~~~~~~~Y~asKa 159 (270)
T 1yde_A 82 RLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSLVGAIGQAQAVPYVATKG 159 (270)
T ss_dssp CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCHHHHHCCTTCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC--CCEEEEEcCccccCCCCCCcccHHHHH
Confidence 9999999999875 3577889999999999999999999999999999743 489999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----CChh-hhhh-hccccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----TDRD-VVDK-YDISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~~~~-~~~~-~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
|+++|+++++.|++++||+||+|+||+|.|+|.... .... .... .......++.+|+|+|..++|++++ ..+
T Consensus 160 a~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~--~~~ 237 (270)
T 1yde_A 160 AVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVFLASE--ANF 237 (270)
T ss_dssp HHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcCCCCCCcCHHHHHHHHHHHccc--CCC
Confidence 999999999999999999999999999999975321 1110 0110 1111234568999999999998875 356
Q ss_pred ccceEe
Q psy4557 946 VNSILI 951 (958)
Q Consensus 946 i~~~~i 951 (958)
++|..+
T Consensus 238 itG~~i 243 (270)
T 1yde_A 238 CTGIEL 243 (270)
T ss_dssp CCSCEE
T ss_pred cCCCEE
Confidence 777554
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=309.11 Aligned_cols=227 Identities=22% Similarity=0.371 Sum_probs=182.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.+. ... + +..+.+|++|+++++++++++.+.+|
T Consensus 4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~--------~~~-~-~~~~~~D~~d~~~~~~~~~~~~~~~g 73 (250)
T 2fwm_X 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ--------EQY-P-FATEVMDVADAAQVAQVCQRLLAETE 73 (250)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS--------SCC-S-SEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh--------hcC-C-ceEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999998652 111 2 66788999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.++ +.|+||++||.++..+.++...|++||+|
T Consensus 74 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~a 152 (250)
T 2fwm_X 74 RLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQ-RGGAIVTVASDAAHTPRIGMSAYGASKAA 152 (250)
T ss_dssp CCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhc-CCCEEEEECchhhCCCCCCCchHHHHHHH
Confidence 99999999999877788889999999999999999999999999999754 46899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhh-hhc--------cccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVD-KYD--------ISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~-~~~--------~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+++|+++++.|++++||+||+|+||++.|+|..... ...... .+. ..+..+..+|+|+|+.++|+++. .
T Consensus 153 ~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~-~ 231 (250)
T 2fwm_X 153 LKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASD-L 231 (250)
T ss_dssp HHHHHHHHHHHHGGGTCEEEEEEECCC------------------------------------CHHHHHHHHHHHHSG-G
T ss_pred HHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhhhcccccCCCCCCcCHHHHHHHHHHHhCc-c
Confidence 999999999999999999999999999999865321 111011 110 11223568999999999997764 4
Q ss_pred CccccceEe
Q psy4557 943 HSAVNSILI 951 (958)
Q Consensus 943 ~~~i~~~~i 951 (958)
..+++|..+
T Consensus 232 ~~~~tG~~i 240 (250)
T 2fwm_X 232 ASHITLQDI 240 (250)
T ss_dssp GTTCCSCEE
T ss_pred ccCCCCCEE
Confidence 456666554
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=315.26 Aligned_cols=234 Identities=18% Similarity=0.218 Sum_probs=194.5
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.++||+++||||+ +|||+++|++|+++|++|++++|+.+ .++..+++.+..+.+.++.+|+++.++++++++++.+.
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD 81 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4789999999999 99999999999999999999999976 33333344332234678899999999999999999999
Q ss_pred cCCccEEEEccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhh
Q psy4557 791 LGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVY 866 (958)
Q Consensus 791 ~g~iDilInnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y 866 (958)
+|++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|.|.+ +|+|||+||.++..+.++...|
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~g~iv~isS~~~~~~~~~~~~Y 158 (275)
T 2pd4_A 82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN---GASVLTLSYLGSTKYMAHYNVM 158 (275)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEEECGGGTSBCTTCHHH
T ss_pred cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc---CCEEEEEecchhcCCCCCchhh
Confidence 9999999999998754 56778999999999999999999999999999862 4899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
++||+|+++|+++|+.|++++||+||+|+||+|+|+|...... +.....+. .....+..+|+|+|..++|+++ +...
T Consensus 159 ~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l~s-~~~~ 237 (275)
T 2pd4_A 159 GLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLS-SLSS 237 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHS-GGGT
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhC-cccc
Confidence 9999999999999999999999999999999999998654322 11111111 1123357899999999999875 4445
Q ss_pred cccceEe
Q psy4557 945 AVNSILI 951 (958)
Q Consensus 945 ~i~~~~i 951 (958)
+++|..+
T Consensus 238 ~~tG~~~ 244 (275)
T 2pd4_A 238 GVSGEVH 244 (275)
T ss_dssp TCCSCEE
T ss_pred CCCCCEE
Confidence 6666544
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=314.67 Aligned_cols=236 Identities=17% Similarity=0.155 Sum_probs=193.1
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
..+++|++|||||+ +|||+++|++|+++|++|++++|+....+.+.+ +.+..+.+.++++|++++++++++++++.+
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITE-FAAEFGSELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHH-HHHHcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999999998 999999999999999999999999554444333 322234577899999999999999999999
Q ss_pred HcCCccEEEEccccCCC----ccccC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 790 ELGHIDILVNNAGVMYF----TLMEK-YKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~----~~~~~-~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
.+|++|+||||||+... ..+.+ .+.++|++++++|+.|++++++.++|.|. +.|+||++||.++..+.++.+
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~g~iv~isS~~~~~~~~~~~ 165 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLS---DDASLLTLSYLGAERAIPNYN 165 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEE---EEEEEEEEECGGGTSBCTTTT
T ss_pred HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhc---cCceEEEEeccccccCCCCcc
Confidence 99999999999998764 45555 89999999999999999999999999886 258999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh-hhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR-DVVDKYD-ISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~-~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.|++||+|+++|+++|+.|++++||+||+|+||+|+|+|....... .....+. .....+..+|+|+|+.++|+++ +.
T Consensus 166 ~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~pedva~~i~~l~s-~~ 244 (271)
T 3ek2_A 166 TMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLS-DL 244 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHS-GG
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcC-cc
Confidence 9999999999999999999999999999999999999997653211 1111111 1233457899999999999765 55
Q ss_pred CccccceEec
Q psy4557 943 HSAVNSILIE 952 (958)
Q Consensus 943 ~~~i~~~~i~ 952 (958)
..+++|..+.
T Consensus 245 ~~~~tG~~i~ 254 (271)
T 3ek2_A 245 ASGVTAEVMH 254 (271)
T ss_dssp GTTCCSEEEE
T ss_pred cCCeeeeEEE
Confidence 5677777664
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=314.04 Aligned_cols=235 Identities=19% Similarity=0.244 Sum_probs=193.4
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.++||+++||||+ +|||+++|++|+++|++|++++|+.+ .++..+++.+..+.+.++.+|+++.++++++++++.+.
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEEN 96 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4889999999999 99999999999999999999999975 33333344322223667899999999999999999999
Q ss_pred cCCccEEEEccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhh
Q psy4557 791 LGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVY 866 (958)
Q Consensus 791 ~g~iDilInnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y 866 (958)
+|++|+||||||+... .++.+.+.++|++++++|+.|++++++.++|.|.+ .+|+|||+||.++..+.++...|
T Consensus 97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~~g~iv~isS~~~~~~~~~~~~Y 174 (285)
T 2p91_A 97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEG--RNGAIVTLSYYGAEKVVPHYNVM 174 (285)
T ss_dssp TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTT--SCCEEEEEECGGGTSBCTTTTHH
T ss_pred cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH--cCCEEEEEccchhccCCCCccHH
Confidence 9999999999998754 56778899999999999999999999999999963 35899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
++||+|+++|+++++.|++++||+||+|+||+|+|++...... ........ .....+..+|+|+|+.++|+++ +...
T Consensus 175 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~~~~l~s-~~~~ 253 (285)
T 2p91_A 175 GIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFGKPITIEDVGDTAVFLCS-DWAR 253 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTS-GGGT
T ss_pred HHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-Cccc
Confidence 9999999999999999999999999999999999998654322 11111111 1122356899999999999775 4455
Q ss_pred cccceEe
Q psy4557 945 AVNSILI 951 (958)
Q Consensus 945 ~i~~~~i 951 (958)
+++|..+
T Consensus 254 ~~tG~~~ 260 (285)
T 2p91_A 254 AITGEVV 260 (285)
T ss_dssp TCCSCEE
T ss_pred CCCCCEE
Confidence 6666543
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=317.02 Aligned_cols=241 Identities=22% Similarity=0.343 Sum_probs=196.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC-----hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-----IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-----~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
+++|+++|||||+|||+++|++|+++|++|++++|+ .++++++.+.+...+.++.++.+|++|+++++++++++.
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999988776 456777777666666789999999999999999999999
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-CCCCChhhh
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYT 867 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-~~~~~~~Y~ 867 (958)
+.+|++|+||||||+...+++.+.+.++|++++++|+.|+++++++++|+|.++ +.|+||++||.++.. +.++.+.|+
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~iV~isS~~~~~~~~~~~~~Y~ 161 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLLIWISSSSSAGGTPPYLAPYF 161 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCCSSCHHHH
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEecchhccCCCCcchhHH
Confidence 999999999999999888889999999999999999999999999999999744 469999999999985 457788999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----CC-hhhhhhhc---------------cccCCCCCCH
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----TD-RDVVDKYD---------------ISKAVPVLTT 927 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~~-~~~~~~~~---------------~~~~~~~~~p 927 (958)
+||+|+++|+++|+.|++++||+||+|+||+|.|++.... .. ......+. .....+..+|
T Consensus 162 asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p 241 (324)
T 3u9l_A 162 AAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNAGLGEEIKKAFAAIVPPDADV 241 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHHHHHHHTTTTTHHHHHHHHHHHTSCTTCCT
T ss_pred HHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHHHhhccccccCCHHHHHHHHHHhcCCCCCH
Confidence 9999999999999999999999999999999998764321 11 10000000 0011233689
Q ss_pred HHHHHHHHHHhcCCCCccccceEecCCC
Q psy4557 928 KEISQSIIFALLQPSHSAVNSILIEPPL 955 (958)
Q Consensus 928 ~~ia~~i~~~l~~~~~~~i~~~~i~p~~ 955 (958)
+++|++++.++..|.......+.+.|..
T Consensus 242 ~~vA~aiv~~~~~~~~~~~~~~~~gp~~ 269 (324)
T 3u9l_A 242 SLVADAIVRVVGTASGKRPFRVHVDPAE 269 (324)
T ss_dssp HHHHHHHHHHHTSCTTCCCSEEEECTTC
T ss_pred HHHHHHHHHHhcCCCCCCCeEEEeCCcc
Confidence 9999999999988865556677777754
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=349.35 Aligned_cols=223 Identities=21% Similarity=0.347 Sum_probs=192.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh---------hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI---------DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKV 783 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~---------~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~ 783 (958)
+++||++|||||++|||+++|++|+++|++|++++|+. +.++++.+++...+++.. +|++|.++++++
T Consensus 5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~---~d~~d~~~~~~~ 81 (604)
T 2et6_A 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAV---ADYNNVLDGDKI 81 (604)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEE---EECCCTTCHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEE---EEcCCHHHHHHH
Confidence 57899999999999999999999999999999998765 678888888876665543 588888889999
Q ss_pred HHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC
Q psy4557 784 VREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863 (958)
Q Consensus 784 ~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~ 863 (958)
++++.+.||+||+||||||+....++.+++.++|+++|++|+.|+++++|+++|+|+++ +.|+||||||.+|..+.++.
T Consensus 82 v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~-~~G~IVnisS~ag~~~~~~~ 160 (604)
T 2et6_A 82 VETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQ-KYGRIVNTSSPAGLYGNFGQ 160 (604)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHHCCTTB
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECCHHHcCCCCCc
Confidence 99999999999999999999877788999999999999999999999999999999754 46999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+.|++||+|+.+|+|+|+.|++++|||||+|+|| +.|+|......+.. ....+|+++|..++|+++..
T Consensus 161 ~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~m~~~~~~~~~---------~~~~~pe~vA~~v~~L~s~~-- 228 (604)
T 2et6_A 161 ANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSRMTESIMPPPM---------LEKLGPEKVAPLVLYLSSAE-- 228 (604)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCHHHHTTSCHHH---------HTTCSHHHHHHHHHHHTSSS--
T ss_pred hHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCccccccCChhh---------hccCCHHHHHHHHHHHhCCc--
Confidence 9999999999999999999999999999999998 68887543211110 12368999999999977654
Q ss_pred ccccceEe
Q psy4557 944 SAVNSILI 951 (958)
Q Consensus 944 ~~i~~~~i 951 (958)
.+++|..+
T Consensus 229 ~~itG~~~ 236 (604)
T 2et6_A 229 NELTGQFF 236 (604)
T ss_dssp CCCCSCEE
T ss_pred ccCCCCEE
Confidence 66777655
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=313.01 Aligned_cols=236 Identities=19% Similarity=0.247 Sum_probs=194.6
Q ss_pred CCCCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 711 ~~~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
..+++||+++||||+ +|||+++|++|+++|++|++++|+.+ .++..+++.+..+.+.++.+|++++++++++++++.
T Consensus 3 ~~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (261)
T 2wyu_A 3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVK 81 (261)
T ss_dssp EECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHH
Confidence 346789999999999 99999999999999999999999975 333333333222336788999999999999999999
Q ss_pred HHcCCccEEEEccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 789 AELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
+.+|++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|.|. . +|+||++||.++..+.++..
T Consensus 82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~--~g~iv~isS~~~~~~~~~~~ 158 (261)
T 2wyu_A 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLR-E--GGGIVTLTYYASEKVVPKYN 158 (261)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEE-E--EEEEEEEECGGGTSBCTTCH
T ss_pred HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhc-c--CCEEEEEecccccCCCCCch
Confidence 999999999999998753 5677889999999999999999999999999985 2 48999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.|++||+|+++|+++++.|++++||+||+|+||+|+|++...... +....... ..+..+..+|+|+|+.++|+++ +.
T Consensus 159 ~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s-~~ 237 (261)
T 2wyu_A 159 VMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLS-PL 237 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC-hh
Confidence 999999999999999999999999999999999999998653221 11111111 1123457899999999999775 44
Q ss_pred CccccceEe
Q psy4557 943 HSAVNSILI 951 (958)
Q Consensus 943 ~~~i~~~~i 951 (958)
..+++|..+
T Consensus 238 ~~~~tG~~~ 246 (261)
T 2wyu_A 238 ASGITGEVV 246 (261)
T ss_dssp GTTCCSCEE
T ss_pred hcCCCCCEE
Confidence 556666544
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=309.14 Aligned_cols=232 Identities=23% Similarity=0.367 Sum_probs=180.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..+++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. ..+.++.+|+++.++++++++ .+
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~----~~ 82 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK---DNYTIEVCNLANKEECSNLIS----KT 82 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---SSEEEEECCTTSHHHHHHHHH----TC
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc---cCccEEEcCCCCHHHHHHHHH----hc
Confidence 57899999999999999999999999999999999999999998887764 357888999999999877665 45
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|+||||||+.....+.+.+.++|++++++|+.|++.+++.++|.|.++ +.|+||++||.++..+.++.+.|++||+
T Consensus 83 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~ 161 (249)
T 3f9i_A 83 SNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSIVGIAGNPGQANYCASKA 161 (249)
T ss_dssp SCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCCC--CCSCSHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccHHhccCCCCCchhHHHHH
Confidence 899999999999877777788899999999999999999999999999744 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
|+++|+++++.|++++||+||+|+||+|.|+|...................+..+|+|+|++++|+++ +...+++|..+
T Consensus 162 a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s-~~~~~~tG~~~ 240 (249)
T 3f9i_A 162 GLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQREAIVQKIPLGTYGIPEDVAYAVAFLAS-NNASYITGQTL 240 (249)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECCBC------CCHHHHHHHHHHCTTCSCBCHHHHHHHHHHHHS-GGGTTCCSCEE
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-CccCCccCcEE
Confidence 99999999999999999999999999999999765432211111112233467889999999999776 44456777655
Q ss_pred c
Q psy4557 952 E 952 (958)
Q Consensus 952 ~ 952 (958)
.
T Consensus 241 ~ 241 (249)
T 3f9i_A 241 H 241 (249)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=311.34 Aligned_cols=226 Identities=23% Similarity=0.373 Sum_probs=192.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++ +.++.++++|+++.++++++++++.+.+
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 72 (264)
T 2dtx_A 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-----------EAKYDHIECDVTNPDQVKASIDHIFKEY 72 (264)
T ss_dssp GGGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-----------SCSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-----------CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999998754 3457788999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+ ++.|+||++||.++..+.++...|++||+
T Consensus 73 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~Y~~sK~ 151 (264)
T 2dtx_A 73 GSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIR-SRDPSIVNISSVQASIITKNASAYVTSKH 151 (264)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-SSSCEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCcEEEEECCchhccCCCCchhHHHHHH
Confidence 99999999999987778889999999999999999999999999999974 44689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC------Ch----hhhhhhc-cccCCCCCCHHHHHHHHHHHhcC
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST------DR----DVVDKYD-ISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~------~~----~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
|+++|+++++.|+++. |+||+|+||+++|+|..... .. .....+. .....++.+|+|+|+.++|+++
T Consensus 152 a~~~~~~~la~e~~~~-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s- 229 (264)
T 2dtx_A 152 AVIGLTKSIALDYAPL-LRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLAS- 229 (264)
T ss_dssp HHHHHHHHHHHHHTTT-SEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhcCC-cEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-
Confidence 9999999999999998 99999999999999854210 11 1111111 1123457899999999999776
Q ss_pred CCCccccceEe
Q psy4557 941 PSHSAVNSILI 951 (958)
Q Consensus 941 ~~~~~i~~~~i 951 (958)
+...+++|..+
T Consensus 230 ~~~~~~tG~~i 240 (264)
T 2dtx_A 230 REASFITGTCL 240 (264)
T ss_dssp GGGTTCCSCEE
T ss_pred chhcCCCCcEE
Confidence 44456666544
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=331.26 Aligned_cols=226 Identities=12% Similarity=0.013 Sum_probs=186.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHH-cCCeEEEEecChhhHH------------HHHHHhhcCCCcEEEEEecCCCHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVT-LGAKVVAVARRIDRLE------------NLKTSLQNAPGSIIVKKLDVTIENDVK 781 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~-~Ga~Vi~~~r~~~~l~------------~~~~~l~~~~~~~~~~~~Dvs~~~~v~ 781 (958)
.+|++||||||+|||+++|+.|++ +|++|++++|+.+.++ .+.+.+...+.++..+.+|++++++++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v~ 139 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAARA 139 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHHH
Confidence 389999999999999999999999 9999999999865433 234556666778899999999999999
Q ss_pred HHHHHHHHHc-CCccEEEEccccC-------------CCccc---------------------cCCCHHHHHHHHHHHhH
Q psy4557 782 KVVREVLAEL-GHIDILVNNAGVM-------------YFTLM---------------------EKYKLEEWNAMINVNIK 826 (958)
Q Consensus 782 ~~~~~~~~~~-g~iDilInnAG~~-------------~~~~~---------------------~~~~~~~~~~~~~vN~~ 826 (958)
++++++.+.| |+||+||||||+. ...++ .+.+.++|++++++|..
T Consensus 140 ~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~~ 219 (422)
T 3s8m_A 140 QVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGG 219 (422)
T ss_dssp HHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhch
Confidence 9999999999 9999999999972 22333 36799999999999999
Q ss_pred HHH-HHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC--hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCC
Q psy4557 827 GVL-HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL--AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTEL 903 (958)
Q Consensus 827 g~~-~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~--~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~ 903 (958)
+.+ .+++.+++.+... ++|+|||+||+++..+.|++ ++|++||+|+.+|+|+||.|++++|||||+|+||+|.|+|
T Consensus 220 ~~~~~~~~a~~~~~m~~-~gG~IVniSSi~g~~~~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVNaVaPG~i~T~~ 298 (422)
T 3s8m_A 220 QDWELWIDALEGAGVLA-DGARSVAFSYIGTEITWPIYWHGALGKAKVDLDRTAQRLNARLAKHGGGANVAVLKSVVTQA 298 (422)
T ss_dssp HHHHHHHHHHHHTTCEE-EEEEEEEEEECCCGGGHHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTT
T ss_pred hHHHHHHHHHHHHHHhh-CCCEEEEEeCchhhccCCCccchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEcCCCcChh
Confidence 997 7888877644323 35899999999999988876 9999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 904 LSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
....+..............+..+||++++.+.|++++.
T Consensus 299 ~~~ip~~~~~~~~~~~~m~r~G~pEdva~~v~~L~sd~ 336 (422)
T 3s8m_A 299 SAAIPVMPLYISMVYKIMKEKGLHEGTIEQLDRLFRER 336 (422)
T ss_dssp GGGSTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred hhcCCCChHHHHHHHhhhcCCcChHHHHHHHHHHhcch
Confidence 76543211111111112335789999999999987654
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=298.79 Aligned_cols=227 Identities=30% Similarity=0.510 Sum_probs=191.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.+|+++||||++|||+++|++|+++|++|++++|+.++++++.+++. ++.++.+|+++.++++++++++.+.+|++
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE----GALPLPGDVREEGDWARAVAAMEEAFGEL 79 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh----hceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999999988887776653 56788999999999999999999999999
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+ ++.|+||++||.++..+.++...|++||+|++
T Consensus 80 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~ 158 (234)
T 2ehd_A 80 SALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLR-RGGGTIVNVGSLAGKNPFKGGAAYNASKFGLL 158 (234)
T ss_dssp CEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-TTCEEEEEECCTTTTSCCTTCHHHHHHHHHHH
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-CCCcEEEEECCchhcCCCCCCchhhHHHHHHH
Confidence 99999999987777888999999999999999999999999999974 44699999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecCC
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEPP 954 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p~ 954 (958)
+|+++++.|++++||+|++|+||+++|+|..... . .+ ...+|+|+|+.++++++++.......+.+.|.
T Consensus 159 ~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~---~~------~~~~~~dvA~~~~~l~~~~~~~~~g~~~~~~~ 227 (234)
T 2ehd_A 159 GLAGAAMLDLREANVRVVNVLPGSVDTGFAGNTP--G---QA------WKLKPEDVAQAVLFALEMPGHAMVSEIELRPT 227 (234)
T ss_dssp HHHHHHHHHHGGGTEEEEEEECC---------------------------CCHHHHHHHHHHHHHSCCSSCCCEEECCC-
T ss_pred HHHHHHHHHHhhcCcEEEEEEeCCCcCCcccccc--c---cc------CCCCHHHHHHHHHHHhCCCcccccceEEEeec
Confidence 9999999999999999999999999999864321 0 01 14799999999999998887777778888887
Q ss_pred CCC
Q psy4557 955 LAS 957 (958)
Q Consensus 955 ~~~ 957 (958)
.++
T Consensus 228 ~~~ 230 (234)
T 2ehd_A 228 RPT 230 (234)
T ss_dssp ---
T ss_pred CCC
Confidence 654
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=305.83 Aligned_cols=239 Identities=25% Similarity=0.378 Sum_probs=203.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++||+++||||++|||+++|++|+++|++|++++| +.++++++.+++...+.++.++.+|++++++++++++++.+.
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (261)
T 1gee_A 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999 888888888888766677889999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+++..|+||++||..+..+.++...|++||
T Consensus 83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK 162 (261)
T 1gee_A 83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASK 162 (261)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCCCCccHHHHHH
Confidence 99999999999998777778899999999999999999999999999998544368999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+|+++|+++++.|++++||+|++|+||+|.|++..... .+....... .....+..+|+|+|+.++++++ +...+++|
T Consensus 163 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~-~~~~~~~G 241 (261)
T 1gee_A 163 GGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLAS-SEASYVTG 241 (261)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHS-GGGTTCCS
T ss_pred HHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ccccCCCC
Confidence 99999999999999999999999999999999864210 111111111 1122356799999999999876 44455666
Q ss_pred eEe
Q psy4557 949 ILI 951 (958)
Q Consensus 949 ~~i 951 (958)
..+
T Consensus 242 ~~~ 244 (261)
T 1gee_A 242 ITL 244 (261)
T ss_dssp CEE
T ss_pred cEE
Confidence 444
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=306.40 Aligned_cols=239 Identities=21% Similarity=0.297 Sum_probs=197.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC-------CcEEEEEecCCCHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP-------GSIIVKKLDVTIENDVKKV 783 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~-------~~~~~~~~Dvs~~~~v~~~ 783 (958)
..++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+ .++.++.+|+++.++++++
T Consensus 2 ~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 81 (264)
T 2pd6_A 2 QNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCL 81 (264)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHH
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHH
Confidence 356889999999999999999999999999999999999998888777665443 4677889999999999999
Q ss_pred HHHHHHHcCCc-cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC
Q psy4557 784 VREVLAELGHI-DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG 862 (958)
Q Consensus 784 ~~~~~~~~g~i-DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~ 862 (958)
++.+.+.+|++ |+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+++..|+||++||.++..+.++
T Consensus 82 ~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~ 161 (264)
T 2pd6_A 82 LEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVG 161 (264)
T ss_dssp HHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCCTT
T ss_pred HHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCCCC
Confidence 99999999999 99999999987777888999999999999999999999999999975432589999999999999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 863 LAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 863 ~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
...|++||+|+++|+++++.|++++||+|++|+||++.|++...... .....+. .....++.+|+|+|+.++++++.+
T Consensus 162 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~ 240 (264)
T 2pd6_A 162 QTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQ-KVVDKITEMIPMGHLGDPEDVADVVAFLASED 240 (264)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC-----------CTGGGCTTCSCBCHHHHHHHHHHHHSGG
T ss_pred ChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcCH-HHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999998653211 1111111 112235679999999999987643
Q ss_pred CCccccceEe
Q psy4557 942 SHSAVNSILI 951 (958)
Q Consensus 942 ~~~~i~~~~i 951 (958)
..+++|..+
T Consensus 241 -~~~~~G~~~ 249 (264)
T 2pd6_A 241 -SGYITGTSV 249 (264)
T ss_dssp -GTTCCSCEE
T ss_pred -ccCCCCCEE
Confidence 345666544
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=310.55 Aligned_cols=234 Identities=16% Similarity=0.176 Sum_probs=192.5
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.++||+++||||+ +|||+++|++|+++|++|++++|+. +.++..+++....+...++++|++++++++++++++.+.
T Consensus 6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T 1qsg_A 6 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV 84 (265)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHH
Confidence 4789999999999 9999999999999999999999987 333333444322223467899999999999999999999
Q ss_pred cCCccEEEEccccCCC----ccccC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh
Q psy4557 791 LGHIDILVNNAGVMYF----TLMEK-YKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 791 ~g~iDilInnAG~~~~----~~~~~-~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~ 865 (958)
+|++|+||||||+... .++.+ .+.++|++++++|+.|+++++++++|.|.+ +|+||++||.++..+.++...
T Consensus 85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~g~iv~isS~~~~~~~~~~~~ 161 (265)
T 1qsg_A 85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP---GSALLTLSYLGAERAIPNYNV 161 (265)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEEECGGGTSBCTTTTH
T ss_pred cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc---CCEEEEEcchhhccCCCCchH
Confidence 9999999999998753 45667 899999999999999999999999999852 489999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|++||+|+++|+++++.|++++||+||+|+||+|+|++...... +....... .....+..+|+|+|+.++|+++ +..
T Consensus 162 Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s-~~~ 240 (265)
T 1qsg_A 162 MGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCS-DLS 240 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTS-GGG
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-chh
Confidence 99999999999999999999999999999999999998654321 11111111 1122357899999999999775 445
Q ss_pred ccccceEe
Q psy4557 944 SAVNSILI 951 (958)
Q Consensus 944 ~~i~~~~i 951 (958)
.+++|..+
T Consensus 241 ~~~tG~~~ 248 (265)
T 1qsg_A 241 AGISGEVV 248 (265)
T ss_dssp TTCCSCEE
T ss_pred cCccCCEE
Confidence 56666544
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=304.57 Aligned_cols=235 Identities=28% Similarity=0.417 Sum_probs=203.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
||+++||||++|||+++|++|+++|++|+++ +|+.++++++.+++...+.++.++.+|+++.++++++++++.+.+|++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999999999994 899888888887776556678889999999999999999999999999
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.++ +.|+||++||.++..+.++...|++||++++
T Consensus 81 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~ 159 (244)
T 1edo_A 81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVGLIGNIGQANYAAAKAGVI 159 (244)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHHCCTTCHHHHHHHHHHH
T ss_pred CEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCEEEEECChhhcCCCCCCccchhhHHHHH
Confidence 999999999877778889999999999999999999999999999743 4689999999999989899999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+|+++++.|++++||+|++|+||++.|+|..... ....... ......++.+|+|+|+.+++++.++...+++|..+.
T Consensus 160 ~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~ 237 (244)
T 1edo_A 160 GFSKTAAREGASRNINVNVVCPGFIASDMTAKLG-EDMEKKILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAFT 237 (244)
T ss_dssp HHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC-HHHHHHHHTSCTTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEE
T ss_pred HHHHHHHHHhhhcCCEEEEEeeCccccchhhhcC-hHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCccCCcCCCEEE
Confidence 9999999999999999999999999999865432 1111111 111223567999999999998867777777776553
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=309.69 Aligned_cols=226 Identities=14% Similarity=0.097 Sum_probs=190.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-e--cChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-A--RRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~--r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
||+++||||++|||+++|++|+++|++|+++ + |+.++++++.+++ .+ +|+.+.++++++++++.+.+|
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~--~~-------~~~~~~~~v~~~~~~~~~~~g 71 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN--PG-------TIALAEQKPERLVDATLQHGE 71 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS--TT-------EEECCCCCGGGHHHHHGGGSS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh--CC-------CcccCHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999999999999 6 9998888887766 22 233477888999999999999
Q ss_pred CccEEEEccccCCC---ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 793 HIDILVNNAGVMYF---TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 793 ~iDilInnAG~~~~---~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
++|+||||||+... .++.+.+.++|++++++|+.|+++++++++|+|.++ +.|+||++||.++..+.++...|++|
T Consensus 72 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~~~~~~~Y~as 150 (244)
T 1zmo_A 72 AIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFITSSVGKKPLAYNPLYGPA 150 (244)
T ss_dssp CEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTSCCTTCTTHHHH
T ss_pred CCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECChhhCCCCCCchHHHHH
Confidence 99999999999877 788899999999999999999999999999999754 46999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCC---CCCCChhhhhhh-c-cccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELL---SHSTDRDVVDKY-D-ISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~---~~~~~~~~~~~~-~-~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
|+|+++|+++|+.|++++||+||+|+||+|+|+|. .....++..... . .....++.+|+|+|+.++|+++ +...
T Consensus 151 K~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pe~vA~~v~~l~s-~~~~ 229 (244)
T 1zmo_A 151 RAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVPLGRLGRPDEMGALITFLAS-RRAA 229 (244)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHHHCTTCSCBCHHHHHHHHHHHHT-TTTG
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccccchHHHHHHHhcCCCCCCCcCHHHHHHHHHHHcC-cccc
Confidence 99999999999999999999999999999999986 321100111111 1 1123467899999999999765 5567
Q ss_pred cccceEec
Q psy4557 945 AVNSILIE 952 (958)
Q Consensus 945 ~i~~~~i~ 952 (958)
+++|..+.
T Consensus 230 ~~tG~~i~ 237 (244)
T 1zmo_A 230 PIVGQFFA 237 (244)
T ss_dssp GGTTCEEE
T ss_pred CccCCEEE
Confidence 78776654
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=322.42 Aligned_cols=224 Identities=11% Similarity=0.003 Sum_probs=186.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHH-cCCeEEEEecChhhH------------HHHHHHhhcCCCcEEEEEecCCCHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVT-LGAKVVAVARRIDRL------------ENLKTSLQNAPGSIIVKKLDVTIENDVK 781 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~-~Ga~Vi~~~r~~~~l------------~~~~~~l~~~~~~~~~~~~Dvs~~~~v~ 781 (958)
.||++||||||+|||+++|+.|++ +|++|++++|+.+.. +.+.+.+.+.+.++..+.+|++++++++
T Consensus 46 ~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v~ 125 (405)
T 3zu3_A 46 GPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIKQ 125 (405)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence 689999999999999999999999 999999999876542 2234455566778889999999999999
Q ss_pred HHHHHHHHHcCCccEEEEccccC-------------CCccc---------------------cCCCHHHHHHHHHHHhHH
Q psy4557 782 KVVREVLAELGHIDILVNNAGVM-------------YFTLM---------------------EKYKLEEWNAMINVNIKG 827 (958)
Q Consensus 782 ~~~~~~~~~~g~iDilInnAG~~-------------~~~~~---------------------~~~~~~~~~~~~~vN~~g 827 (958)
++++++.+.||+||+||||||+. ...++ .+.+.++|++++++|..+
T Consensus 126 ~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~~ 205 (405)
T 3zu3_A 126 LTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGGE 205 (405)
T ss_dssp HHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhchh
Confidence 99999999999999999999985 22344 678999999999999999
Q ss_pred HH-HHHHHHHHH-HHhCCCCcEEEEecCccCcCCCCCC--hhhhHHHHHHHHHHHHHHHHhCCC-CcEEEEEECCcccCC
Q psy4557 828 VL-HCIGNILPS-MLHSRRPGHILNISSNAGVRPFAGL--AVYTGTKYFIEGISGALRQEVSDR-NIKVTCIQAGDVKTE 902 (958)
Q Consensus 828 ~~-~~~~~~l~~-m~~~~~~g~IV~isS~~g~~~~~~~--~~Y~asKaa~~~l~~~la~el~~~-gIrv~~v~PG~v~T~ 902 (958)
.+ ++++.+++. |+ . ++|+|||+||+++..+.|.+ +.|++||+|+.+|+|+||.||+++ |||||+|+||+|.|+
T Consensus 206 ~~~~~~~~~~~~~m~-~-~gG~IVniSSi~~~~~~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRVNaVaPG~i~T~ 283 (405)
T 3zu3_A 206 DWQMWIDALLDAGVL-A-EGAQTTAFTYLGEKITHDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARVSVLKAVVSQ 283 (405)
T ss_dssp HHHHHHHHHHHHTCE-E-EEEEEEEEECCCCGGGTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEECCCCCCH
T ss_pred HHHHHHHHHHHHhhh-h-CCcEEEEEeCchhhCcCCCccchHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEEeCCCcCc
Confidence 98 788877754 44 3 35999999999999999988 999999999999999999999999 999999999999999
Q ss_pred CCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcC
Q psy4557 903 LLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
|....+..............+..+||+++.++.|+++.
T Consensus 284 ~s~~ip~~p~y~~~l~~~mkr~G~~Ed~a~~i~~L~sd 321 (405)
T 3zu3_A 284 ASSAIPMMPLYLSLLFKVMKEKGTHEGCIEQVYSLYKD 321 (405)
T ss_dssp HHHTSTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred hhhcCCCCcHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 87654332211111111223568999999999998765
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=309.38 Aligned_cols=237 Identities=25% Similarity=0.364 Sum_probs=201.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..+++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 119 (285)
T 2c07_A 40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 119 (285)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999988888887666778899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+. +.|+||++||.++..+.++...|++||+
T Consensus 120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~~~~~~~~~~~Y~asK~ 198 (285)
T 2c07_A 120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINISSIVGLTGNVGQANYSSSKA 198 (285)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHHCCTTCHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEECChhhccCCCCCchHHHHHH
Confidence 999999999999877778889999999999999999999999999999744 4589999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+++|+++++.|+++.||+||+|+||++.|++..... +....... .....++.+|+|+|++++++++. ...+++|..
T Consensus 199 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~-~~~~~~G~~ 276 (285)
T 2c07_A 199 GVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKIS-EQIKKNIISNIPAGRMGTPEEVANLACFLSSD-KSGYINGRV 276 (285)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CC-HHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCE
T ss_pred HHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhcC-HHHHHHHHhhCCCCCCCCHHHHHHHHHHHhCC-CcCCCCCCE
Confidence 9999999999999999999999999999999865432 21111111 11223578999999999997764 344556554
Q ss_pred e
Q psy4557 951 I 951 (958)
Q Consensus 951 i 951 (958)
+
T Consensus 277 i 277 (285)
T 2c07_A 277 F 277 (285)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=311.86 Aligned_cols=233 Identities=18% Similarity=0.236 Sum_probs=194.3
Q ss_pred CCCCCCEEEEEcC--CchHHHHHHHHHHHcCCeEEEEecChhh-HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGS--SSGIGEQLVKDLVTLGAKVVAVARRIDR-LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 712 ~~l~~k~~lITGa--s~GIG~aia~~la~~Ga~Vi~~~r~~~~-l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
.+++||+++|||| ++|||+++|++|+++|++|++++|+.++ ++++.+++ +.++.++++|++++++++++++++.
T Consensus 3 ~~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (269)
T 2h7i_A 3 GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL---PAKAPLLELDVQNEEHLASLAGRVT 79 (269)
T ss_dssp CTTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS---SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc---CCCceEEEccCCCHHHHHHHHHHHH
Confidence 3578999999999 9999999999999999999999999765 45554433 3457788999999999999999999
Q ss_pred HHcC---CccEEEEccccCC-----CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC
Q psy4557 789 AELG---HIDILVNNAGVMY-----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF 860 (958)
Q Consensus 789 ~~~g---~iDilInnAG~~~-----~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~ 860 (958)
+.+| ++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|+|.+ .|+||++||..+ .+.
T Consensus 80 ~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~g~iv~iss~~~-~~~ 155 (269)
T 2h7i_A 80 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP---GGSIVGMDFDPS-RAM 155 (269)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEEECCCS-SCC
T ss_pred HHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc---CCeEEEEcCccc-ccc
Confidence 9999 9999999999875 457788999999999999999999999999999852 389999999876 678
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----CChhh-------hhhhc-cccCC-CCCCH
Q psy4557 861 AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----TDRDV-------VDKYD-ISKAV-PVLTT 927 (958)
Q Consensus 861 ~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~~~~~-------~~~~~-~~~~~-~~~~p 927 (958)
+++..|++||+|+++|+++++.|++++||+||+|+||+|+|+|.... ..+.. ...+. ..+.. ++.+|
T Consensus 156 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rr~~~p 235 (269)
T 2h7i_A 156 PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDA 235 (269)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhccCCcccCCCCH
Confidence 88999999999999999999999999999999999999999975321 11110 01111 11223 47899
Q ss_pred HHHHHHHHHHhcCCCCccccceEec
Q psy4557 928 KEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 928 ~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+|+|..++|+++ +...+++|..|.
T Consensus 236 ~dvA~~v~~L~s-~~~~~itG~~i~ 259 (269)
T 2h7i_A 236 TPVAKTVCALLS-DWLPATTGDIIY 259 (269)
T ss_dssp HHHHHHHHHHHS-SSCTTCCSEEEE
T ss_pred HHHHHHHHHHhC-chhccCcceEEE
Confidence 999999999775 666788887664
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=301.39 Aligned_cols=238 Identities=22% Similarity=0.286 Sum_probs=201.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++... .++.++.+|++++++++++++.+.+.+
T Consensus 2 ~~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (251)
T 1zk4_A 2 NRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP-DQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcc-CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999998888887777543 568889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+.+.+|+||++||.++..+.++...|++||+
T Consensus 81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~ 160 (251)
T 1zk4_A 81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKG 160 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCCCCCccchHHHH
Confidence 99999999999987777888999999999999999999999999999974432389999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 872 FIEGISGALRQEVS--DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 872 a~~~l~~~la~el~--~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
++++|+++++.|+. ++||+|++|+||++.|++.............. .....++.+|+|+|+.++++++.+ ..+++|
T Consensus 161 a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G 239 (251)
T 1zk4_A 161 AVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYLASNE-SKFATG 239 (251)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTTTCTTSSCBCHHHHHHHHHHHHSGG-GTTCCS
T ss_pred HHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCchhhhHHHhhcCCCCCCcCHHHHHHHHHHHcCcc-cccccC
Confidence 99999999999998 89999999999999999865432211111111 112234679999999999987643 445555
Q ss_pred eEe
Q psy4557 949 ILI 951 (958)
Q Consensus 949 ~~i 951 (958)
..+
T Consensus 240 ~~~ 242 (251)
T 1zk4_A 240 SEF 242 (251)
T ss_dssp CEE
T ss_pred cEE
Confidence 544
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=304.17 Aligned_cols=226 Identities=22% Similarity=0.283 Sum_probs=190.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+++||||++|||+++|++|+++|++|++++|+.++ +.+++ + +..+.+|+++ ++++++++++.+.+|++|
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~----~-~~~~~~D~~~-~~~~~~~~~~~~~~g~id 72 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSL----G-AVPLPTDLEK-DDPKGLVKRALEALGGLH 72 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHH----T-CEEEECCTTT-SCHHHHHHHHHHHHTSCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhh----C-cEEEecCCch-HHHHHHHHHHHHHcCCCC
Confidence 6899999999999999999999999999999999775 33333 2 6678999999 999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC--CCChhhhHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF--AGLAVYTGTKYFI 873 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~--~~~~~Y~asKaa~ 873 (958)
+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.++ +.|+||++||.++..+. ++...|++||+|+
T Consensus 73 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~~~Y~~sK~a~ 151 (239)
T 2ekp_A 73 VLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEA-GWGRVLFIGSVTTFTAGGPVPIPAYTTAKTAL 151 (239)
T ss_dssp EEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTSCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECchhhccCCCCCCCccHHHHHHHH
Confidence 99999999877788899999999999999999999999999999754 46999999999998887 8899999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
++|+++++.|++++||+||+|+||++.|+|..... .+....... ..+..++.+|+|+|+.++|+++ +...+++|..+
T Consensus 152 ~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s-~~~~~~tG~~~ 230 (239)
T 2ekp_A 152 LGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPMGRWARPEEIARVAAVLCG-DEAEYLTGQAV 230 (239)
T ss_dssp HHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHTS-GGGTTCCSCEE
T ss_pred HHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-chhcCCCCCEE
Confidence 99999999999999999999999999999854211 111111111 1122356899999999999765 44556777655
Q ss_pred c
Q psy4557 952 E 952 (958)
Q Consensus 952 ~ 952 (958)
.
T Consensus 231 ~ 231 (239)
T 2ekp_A 231 A 231 (239)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-35 Score=311.17 Aligned_cols=232 Identities=25% Similarity=0.396 Sum_probs=170.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||++|||||++|||+++|++|++ |++|++++|+.++++++.+ ...+.++.+|+++.++ .+.+.+..+.++
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~-----~~~~~~~~~D~~~~~~-~~~~~~~~~~~~ 74 (245)
T 3e9n_A 2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE-----IEGVEPIESDIVKEVL-EEGGVDKLKNLD 74 (245)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT-----STTEEEEECCHHHHHH-TSSSCGGGTTCS
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh-----hcCCcceecccchHHH-HHHHHHHHHhcC
Confidence 46899999999999999999999998 9999999999888776654 2357888999998876 555556667889
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+. +|+||++||.++..+.++.+.|++||+|
T Consensus 75 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~g~iv~isS~~~~~~~~~~~~Y~asK~a 152 (245)
T 3e9n_A 75 HVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAA--SGCVIYINSGAGNGPHPGNTIYAASKHA 152 (245)
T ss_dssp CCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEC----------CHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCeEEEEcCcccccCCCCchHHHHHHHH
Confidence 99999999999887888888999999999999999999999999999743 3899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+++|+++|+.|++++||+||+|+||+|.|+|......... ......+..+|+|+|++++|++..+....+.++.++
T Consensus 153 ~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~----~~~~~~~~~~p~dvA~~i~~l~~~~~~~~~~~i~~~ 228 (245)
T 3e9n_A 153 LRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDSQG----TNFRPEIYIEPKEIANAIRFVIDAGETTQITNVDVR 228 (245)
T ss_dssp HHHHHHHHHHHHGGGTCEEEEEEECCC--------------------CCGGGSCHHHHHHHHHHHHTSCTTEEEEEEEEE
T ss_pred HHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhhhhh----cccccccCCCHHHHHHHHHHHHcCCCccceeeeEEE
Confidence 9999999999999999999999999999998764322111 011123467999999999999999999999999999
Q ss_pred CCCCC
Q psy4557 953 PPLAS 957 (958)
Q Consensus 953 p~~~~ 957 (958)
|+.++
T Consensus 229 p~~e~ 233 (245)
T 3e9n_A 229 PRIEL 233 (245)
T ss_dssp EC---
T ss_pred ecccc
Confidence 98764
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=308.34 Aligned_cols=229 Identities=24% Similarity=0.384 Sum_probs=190.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++. ++ .++.++.+|++++++++ ++.+.++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~----~~~~~~~~D~~~~~~~~----~~~~~~~ 73 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KY----PGIQTRVLDVTKKKQID----QFANEVE 73 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GS----TTEEEEECCTTCHHHHH----HHHHHCS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hc----cCceEEEeeCCCHHHHH----HHHHHhC
Confidence 478999999999999999999999999999999999987776554 32 25788999999999887 5566789
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC-CChhhhHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA-GLAVYTGTKY 871 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~-~~~~Y~asKa 871 (958)
++|+||||||+....++.+.+.++|++++++|+.|+++++++++|+|.++ +.|+||++||.++..+.+ +...|++||+
T Consensus 74 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~~Y~~sK~ 152 (246)
T 2ag5_A 74 RLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASSVKGVVNRCVYSTTKA 152 (246)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTTBCCTTBHHHHHHHH
T ss_pred CCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEechHhCcCCCCCCccHHHHHH
Confidence 99999999999877788889999999999999999999999999999744 468999999999998888 8999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-----Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-----DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-----~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
|+++|+++++.|++++||+||+|+||+|.|++..... .......+. .....+..+|+|+|+.++|+++ +...+
T Consensus 153 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s-~~~~~ 231 (246)
T 2ag5_A 153 AVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVYLAS-DESAY 231 (246)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCEEHHHHHHHHHHHHS-GGGTT
T ss_pred HHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-ccccC
Confidence 9999999999999999999999999999999753210 011111111 1123356899999999999765 55556
Q ss_pred ccceEec
Q psy4557 946 VNSILIE 952 (958)
Q Consensus 946 i~~~~i~ 952 (958)
++|..+.
T Consensus 232 ~tG~~i~ 238 (246)
T 2ag5_A 232 VTGNPVI 238 (246)
T ss_dssp CCSCEEE
T ss_pred CCCCEEE
Confidence 7776553
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=327.16 Aligned_cols=234 Identities=14% Similarity=0.184 Sum_probs=191.1
Q ss_pred CCCEEEEEcCCc--hHHHHHHHHHHHcCCeEEEEecCh---------hhHHHHHHHhhcC---CCcEEEEEecCCCH--H
Q psy4557 715 ANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARRI---------DRLENLKTSLQNA---PGSIIVKKLDVTIE--N 778 (958)
Q Consensus 715 ~~k~~lITGas~--GIG~aia~~la~~Ga~Vi~~~r~~---------~~l~~~~~~l~~~---~~~~~~~~~Dvs~~--~ 778 (958)
++|++|||||++ |||+++|++|+++|++|++++|+. ++++...+..... ...+.++.+|+++. +
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 479999999986 999999999999999999777664 2233222222221 13467889999988 8
Q ss_pred ------------------HHHHHHHHHHHHcCCccEEEEccccC--CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4557 779 ------------------DVKKVVREVLAELGHIDILVNNAGVM--YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838 (958)
Q Consensus 779 ------------------~v~~~~~~~~~~~g~iDilInnAG~~--~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~ 838 (958)
+++++++++.+.+|++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|+
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999985 3567889999999999999999999999999999
Q ss_pred HHhCCCCcEEEEecCccCcCCCCCCh-hhhHHHHHHHHHHHHHHHHhCC-CCcEEEEEECCcccCCCCCCCCChh-----
Q psy4557 839 MLHSRRPGHILNISSNAGVRPFAGLA-VYTGTKYFIEGISGALRQEVSD-RNIKVTCIQAGDVKTELLSHSTDRD----- 911 (958)
Q Consensus 839 m~~~~~~g~IV~isS~~g~~~~~~~~-~Y~asKaa~~~l~~~la~el~~-~gIrv~~v~PG~v~T~~~~~~~~~~----- 911 (958)
|.+ .|+|||+||.++..+.++.. .|++||+|+.+|+++|+.|+++ +||+||+|+||+|+|+|........
T Consensus 161 m~~---~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~ 237 (329)
T 3lt0_A 161 MKP---QSSIISLTYHASQKVVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAINKLNNTYEN 237 (329)
T ss_dssp EEE---EEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHTCC--------
T ss_pred Hhh---CCeEEEEeCccccCCCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeechhHhhhhhhcccccc
Confidence 963 29999999999999999996 9999999999999999999998 8999999999999999865431100
Q ss_pred ---------------------------------------hhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 912 ---------------------------------------VVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 912 ---------------------------------------~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
..... ...+..+..+|+|+|..++|+++ +...+++|..|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~fL~s-~~a~~itG~~i 316 (329)
T 3lt0_A 238 NTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQKLLSTDIGSVASFLLS-RESRAITGQTI 316 (329)
T ss_dssp ----------------------------------CHHHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHS-GGGTTCCSCEE
T ss_pred cccccccccccccchhhcccccchhhhhhhhcccchhHHHHHHHhhcCcccCcCCHHHHHHHHHHHhC-chhccccCcEE
Confidence 00111 11233467899999999999765 66778888876
Q ss_pred c
Q psy4557 952 E 952 (958)
Q Consensus 952 ~ 952 (958)
.
T Consensus 317 ~ 317 (329)
T 3lt0_A 317 Y 317 (329)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=307.57 Aligned_cols=226 Identities=30% Similarity=0.422 Sum_probs=194.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|+++.++++++++++.+.+|+
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 79 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY---PDRAEAISLDVTDGERIDVVAADVLARYGR 79 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC---TTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---cCCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999999999999999999888777654 456889999999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+. +.|+||++||.++..+.++.+.|++||+|+
T Consensus 80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~ 158 (281)
T 3m1a_A 80 VDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRER-GSGSVVNISSFGGQLSFAGFSAYSATKAAL 158 (281)
T ss_dssp CSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTCCCTTCHHHHHHHHHH
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEcCccccCCCCCchHHHHHHHHH
Confidence 9999999999877788899999999999999999999999999999744 469999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC------hhhhh------h-hccccCCCCCCHHHHHHHHHHHhcC
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD------RDVVD------K-YDISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~------~~~~~------~-~~~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
++|+++++.|++++||+||+|+||+|.|++...... ..... . .......+..+|+|+|+++++++..
T Consensus 159 ~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~ 238 (281)
T 3m1a_A 159 EQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRLALDT 238 (281)
T ss_dssp HHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHHC-----CBCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHhhccCCCCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999654211 00000 0 0111234568899999999999887
Q ss_pred CCC
Q psy4557 941 PSH 943 (958)
Q Consensus 941 ~~~ 943 (958)
+..
T Consensus 239 ~~~ 241 (281)
T 3m1a_A 239 EKT 241 (281)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=301.08 Aligned_cols=238 Identities=22% Similarity=0.279 Sum_probs=202.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 9 ~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 9 LRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp GCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999999998888888887666778899999999999999999999999
Q ss_pred CCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC--hhhhH
Q psy4557 792 GHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL--AVYTG 868 (958)
Q Consensus 792 g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~--~~Y~a 868 (958)
+++|+||||||+.. ..++.+.+.++|++++++|+.|++.+++.++|.|.++ +.|+||++||.++..+.++. ..|++
T Consensus 89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~~~~~Y~~ 167 (260)
T 3awd_A 89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQ-KQGVIVAIGSMSGLIVNRPQQQAAYNA 167 (260)
T ss_dssp SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCSSSCCHHHHH
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCCEEEEEecchhcccCCCCCccccHH
Confidence 99999999999876 5677888999999999999999999999999999743 46899999999998887777 89999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCC-CCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLS-HSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~-~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
||+++++|+++++.|++++||+|++|+||++.|++.. ....+.....+. .....++.+|+|+|+.++++++.+ ..++
T Consensus 168 sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~ 246 (260)
T 3awd_A 168 SKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPMGRVGQPDEVASVVQFLASDA-ASLM 246 (260)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCTTSSCBCHHHHHHHHHHHHSGG-GTTC
T ss_pred HHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCch-hccC
Confidence 9999999999999999999999999999999999864 211111111111 112235789999999999987643 3456
Q ss_pred cceEe
Q psy4557 947 NSILI 951 (958)
Q Consensus 947 ~~~~i 951 (958)
+|..+
T Consensus 247 ~G~~~ 251 (260)
T 3awd_A 247 TGAIV 251 (260)
T ss_dssp CSCEE
T ss_pred CCcEE
Confidence 66444
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=302.39 Aligned_cols=232 Identities=23% Similarity=0.296 Sum_probs=193.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|++++++++++++++.+.+|
T Consensus 9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (265)
T 2o23_A 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL---GNNCVFAPADVTSEKDVQTALALAKGKFG 85 (265)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999999999999999999998888887776 34688899999999999999999999999
Q ss_pred CccEEEEccccCCCcccc------CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-----CCcEEEEecCccCcCCCC
Q psy4557 793 HIDILVNNAGVMYFTLME------KYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR-----RPGHILNISSNAGVRPFA 861 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~------~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~-----~~g~IV~isS~~g~~~~~ 861 (958)
++|+||||||+.....+. +.+.++|++++++|+.|++.+++.++|.|.++. +.|+||++||.++..+.+
T Consensus 86 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~ 165 (265)
T 2o23_A 86 RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQV 165 (265)
T ss_dssp CCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT
T ss_pred CCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCCCC
Confidence 999999999987654443 378999999999999999999999999997441 468999999999999999
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccC-CCCCCHHHHHHHHHHHhc
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKA-VPVLTTKEISQSIIFALL 939 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~-~~~~~p~~ia~~i~~~l~ 939 (958)
+...|++||+|+++|+++++.|++++||+||+|+||++.|++...... ....... .... .++.+|+|+|+.+++++.
T Consensus 166 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~ 244 (265)
T 2o23_A 166 GQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPE-KVCNFLASQVPFPSRLGDPAEYAHLVQAIIE 244 (265)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-----------CHHHHTCSSSCSCBCHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCH-HHHHHHHHcCCCcCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998654221 1111111 1112 457899999999999875
Q ss_pred CCCCccccceEe
Q psy4557 940 QPSHSAVNSILI 951 (958)
Q Consensus 940 ~~~~~~i~~~~i 951 (958)
. .+++|..+
T Consensus 245 ~---~~~~G~~i 253 (265)
T 2o23_A 245 N---PFLNGEVI 253 (265)
T ss_dssp C---TTCCSCEE
T ss_pred c---CccCceEE
Confidence 3 34555443
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=304.57 Aligned_cols=237 Identities=23% Similarity=0.302 Sum_probs=180.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL- 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~- 791 (958)
.+++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 11 ~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 90 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999999999999999999988888887666678899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+. +.|+||++||.++..+.++...|++||+
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~~~~~~~~~~~Y~~sK~ 169 (266)
T 1xq1_A 91 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFMSSIAGVVSASVGSIYSATKG 169 (266)
T ss_dssp TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCEEEEEC----------CCHHHHHHH
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEccchhccCCCCCchHHHHHH
Confidence 899999999999877778888999999999999999999999999999743 4589999999999999899999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+++.|+++++.|++++||+||+|+||++.|++......+....... .....+..+|+|+|+.++|+++ +...+++|..
T Consensus 170 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~-~~~~~~~G~~ 248 (266)
T 1xq1_A 170 ALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAFLCM-PAASYITGQT 248 (266)
T ss_dssp HHHHHHHHHHHHHGGGTCEEEEEECCSCC-------------------------CCGGGGHHHHHHHTS-GGGTTCCSCE
T ss_pred HHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-ccccCccCcE
Confidence 9999999999999999999999999999999865432111111111 1112346799999999999775 4445566644
Q ss_pred e
Q psy4557 951 I 951 (958)
Q Consensus 951 i 951 (958)
+
T Consensus 249 ~ 249 (266)
T 1xq1_A 249 I 249 (266)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=298.75 Aligned_cols=235 Identities=23% Similarity=0.378 Sum_probs=199.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHh-hcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL-QNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l-~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++ ...+.++.++.+|++++++++++++++.+.+|+
T Consensus 1 ~~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 3789999999999999999999999999999999999888888777 444567889999999999999999999999999
Q ss_pred ccEEEEccccCCCcc---ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 794 IDILVNNAGVMYFTL---MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 794 iDilInnAG~~~~~~---~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|+||||||+....+ +.+.+.++|++++++|+.|++.+++.++|.|.+. +.|+||++||.++..+.++...|++||
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~~~~~~~Y~~sK 159 (250)
T 2cfc_A 81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQ-GAGVIVNIASVASLVAFPGRSAYTTSK 159 (250)
T ss_dssp CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEECChhhccCCCCchhHHHHH
Confidence 999999999876555 7788999999999999999999999999999744 458999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCC-CCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSH-STDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~-~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+++++|+++++.|++++||+|++|+||++.|++... ...+....... .....++.+|+|+|+.++++++.+ ..+++|
T Consensus 160 ~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G 238 (250)
T 2cfc_A 160 GAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQVADAVMFLAGED-ATYVNG 238 (250)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSTT-CTTCCS
T ss_pred HHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCch-hhcccC
Confidence 999999999999999999999999999999998643 11111111111 112235679999999999987644 445666
Q ss_pred eEe
Q psy4557 949 ILI 951 (958)
Q Consensus 949 ~~i 951 (958)
..+
T Consensus 239 ~~~ 241 (250)
T 2cfc_A 239 AAL 241 (250)
T ss_dssp CEE
T ss_pred CEE
Confidence 544
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=305.87 Aligned_cols=223 Identities=19% Similarity=0.217 Sum_probs=186.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHH-cCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVT-LGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~-~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.++|+++||||++|||+++|++|++ .|++|++++|+.+. ....+.++++|++++++++++++.+ + ++
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~~-~-~~ 69 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF----------SAENLKFIKADLTKQQDITNVLDII-K-NV 69 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC----------CCTTEEEEECCTTCHHHHHHHHHHT-T-TC
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc----------ccccceEEecCcCCHHHHHHHHHHH-H-hC
Confidence 4689999999999999999999999 78999999888541 1235678999999999999999544 4 78
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+ .|+||++||.++..+.++...|++||+|
T Consensus 70 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~---~g~iv~~sS~~~~~~~~~~~~Y~asKaa 146 (244)
T 4e4y_A 70 SFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKV---GASIVFNGSDQCFIAKPNSFAYTLSKGA 146 (244)
T ss_dssp CEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEE---EEEEEEECCGGGTCCCTTBHHHHHHHHH
T ss_pred CCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhcc---CcEEEEECCHHHccCCCCCchhHHHHHH
Confidence 9999999999988888899999999999999999999999999999852 3899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh----------hhhhh-ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD----------VVDKY-DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~----------~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+++|+++|+.|++++||+||+|+||+|+|+|........ ..... ......+..+|+|+|+.++|+++ +
T Consensus 147 ~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s-~ 225 (244)
T 4e4y_A 147 IAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFLLS-D 225 (244)
T ss_dssp HHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHhc-C
Confidence 999999999999999999999999999999864321100 11111 11223457899999999999776 4
Q ss_pred CCccccceEec
Q psy4557 942 SHSAVNSILIE 952 (958)
Q Consensus 942 ~~~~i~~~~i~ 952 (958)
...+++|..+.
T Consensus 226 ~~~~itG~~i~ 236 (244)
T 4e4y_A 226 KSKFMTGGLIP 236 (244)
T ss_dssp GGTTCCSCEEE
T ss_pred ccccccCCeEe
Confidence 45677776653
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=299.06 Aligned_cols=236 Identities=26% Similarity=0.394 Sum_probs=201.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.+|+++.++++++++++.+.
T Consensus 3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (248)
T 2pnf_A 3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL 82 (248)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999888888777754 3457888999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|++|+||||||.....++.+.+.++|++++++|+.|++++++.++|.|.+. +.|+||++||.++..+.++...|++||
T Consensus 83 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~~~Y~~sK 161 (248)
T 2pnf_A 83 VDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNISSVVGFTGNVGQVNYSTTK 161 (248)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEEEEECCHHHHHCCTTCHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEccHHhcCCCCCCchHHHHH
Confidence 9999999999999877777888999999999999999999999999999743 458999999999888888999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
+++++|+++++.|+++.||+|++|+||++.|++..... ......+. .....++.+|+|+|+.++++++.+ ..+++|.
T Consensus 162 ~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~ 239 (248)
T 2pnf_A 162 AGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLS-EEIKQKYKEQIPLGRFGSPEEVANVVLFLCSEL-ASYITGE 239 (248)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC-HHHHHHHHHTCTTSSCBCHHHHHHHHHHHHSGG-GTTCCSC
T ss_pred HHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhcc-HHHHHHHHhcCCCCCccCHHHHHHHHHHHhCch-hhcCCCc
Confidence 99999999999999999999999999999999865322 11111111 112235679999999999987643 3445554
Q ss_pred E
Q psy4557 950 L 950 (958)
Q Consensus 950 ~ 950 (958)
.
T Consensus 240 ~ 240 (248)
T 2pnf_A 240 V 240 (248)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=302.85 Aligned_cols=236 Identities=22% Similarity=0.253 Sum_probs=198.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+.+...+.++.++++|+++.++++++++++.+.+
T Consensus 30 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 109 (279)
T 3ctm_A 30 FSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDF 109 (279)
T ss_dssp GCCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999999999888887777765555678899999999999999999999999
Q ss_pred CCccEEEEccccCCC-cccc-CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC--CCCChhhh
Q psy4557 792 GHIDILVNNAGVMYF-TLME-KYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--FAGLAVYT 867 (958)
Q Consensus 792 g~iDilInnAG~~~~-~~~~-~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~--~~~~~~Y~ 867 (958)
|++|+||||||+... .++. +.+.++|++++++|+.|++++++.++|.|.+. +.|+||++||.++..+ .++...|+
T Consensus 110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~~~~~~~~~Y~ 188 (279)
T 3ctm_A 110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKN-GKGSLIITSSISGKIVNIPQLQAPYN 188 (279)
T ss_dssp SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCCTTSCC---CCHHHHH
T ss_pred CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEECchHhccCCCCCCcccHH
Confidence 999999999998765 5666 78899999999999999999999999999753 4689999999999888 78889999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
+||+++++|+++++.|++++| +||+|+||+++|+|.... .......+ ......++.+|+|+|+.++|+++. ...++
T Consensus 189 ~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~-~~~~~ 265 (279)
T 3ctm_A 189 TAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFA-SKDMKAKWWQLTPLGREGLTQELVGGYLYLASN-ASTFT 265 (279)
T ss_dssp HHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSC-CHHHHHHHHHHSTTCSCBCGGGTHHHHHHHHSG-GGTTC
T ss_pred HHHHHHHHHHHHHHHHhcccC-CEEEEeccCCcccccccc-ChHHHHHHHHhCCccCCcCHHHHHHHHHHHhCc-cccCc
Confidence 999999999999999999999 999999999999997532 22221111 111233578999999999997764 34556
Q ss_pred cceEe
Q psy4557 947 NSILI 951 (958)
Q Consensus 947 ~~~~i 951 (958)
+|..+
T Consensus 266 tG~~i 270 (279)
T 3ctm_A 266 TGSDV 270 (279)
T ss_dssp CSCEE
T ss_pred cCCEE
Confidence 66544
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=300.98 Aligned_cols=234 Identities=28% Similarity=0.413 Sum_probs=179.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++||+++||||++|||+++|++|+++|++|+++ .|+.+.++++.+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T 2hq1_A 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAF 81 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999998 677788888888877666778899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+. +.|+||++||.++..+.++...|++||+
T Consensus 82 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~~~Y~~sK~ 160 (247)
T 2hq1_A 82 GRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQ-KSGKIINITSIAGIIGNAGQANYAASKA 160 (247)
T ss_dssp SCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHH-TCEEEEEECC---------CHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcChhhccCCCCCcHhHHHHH
Confidence 999999999999876677788899999999999999999999999999743 4589999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
++++|+++++.|++++||+||+|+||++.|++..... ......+. .....+..+|+|+|++++++++.+ ..++++.
T Consensus 161 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~ 237 (247)
T 2hq1_A 161 GLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLP-DKVKEMYLNNIPLKRFGTPEEVANVVGFLASDD-SNYITGQ 237 (247)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSC-HHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSC
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhcc-hHHHHHHHhhCCCCCCCCHHHHHHHHHHHcCcc-cccccCc
Confidence 9999999999999999999999999999999764322 11111111 112235689999999999977643 3445553
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=323.67 Aligned_cols=236 Identities=25% Similarity=0.327 Sum_probs=195.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh--hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID--RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~--~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
..++||++|||||++|||+++|+.|+++|++|++++|+.. .+++..+++ ...++.||++|.++++++++++.+
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~-----~~~~~~~Dvtd~~~v~~~~~~~~~ 283 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKV-----GGTALTLDVTADDAVDKITAHVTE 283 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHH-----TCEEEECCTTSTTHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999742 333333333 245789999999999999999999
Q ss_pred HcCC-ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 790 ELGH-IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 790 ~~g~-iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
.+|+ ||+||||||+.....+.+.+.++|++++++|+.|++++++.++|.|. .++.|+||++||+++..+.++++.|++
T Consensus 284 ~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~-~~~~g~iV~iSS~a~~~g~~g~~~Yaa 362 (454)
T 3u0b_A 284 HHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGT-IGEGGRVIGLSSMAGIAGNRGQTNYAT 362 (454)
T ss_dssp HSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTS-SCTTCEEEEECCHHHHHCCTTCHHHHH
T ss_pred HcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCEEEEEeChHhCCCCCCCHHHHH
Confidence 9986 99999999999888899999999999999999999999999999986 445699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
||+++++|+++|+.|++++||+||+|+||+|+|+|...................+..+|+|+|+.++|+++ +...+++|
T Consensus 363 sKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~l~r~g~pedvA~~v~fL~s-~~a~~itG 441 (454)
T 3u0b_A 363 TKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLATREVGRRLNSLFQGGQPVDVAELIAYFAS-PASNAVTG 441 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------CHHHHHSBTTSSCBCHHHHHHHHHHHHC-GGGTTCCS
T ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchhhHHHHHhhccccCCCCHHHHHHHHHHHhC-CccCCCCC
Confidence 99999999999999999999999999999999999765322111111112233456799999999999764 67788998
Q ss_pred eEecCC
Q psy4557 949 ILIEPP 954 (958)
Q Consensus 949 ~~i~p~ 954 (958)
..|.-.
T Consensus 442 ~~i~vd 447 (454)
T 3u0b_A 442 NTIRVC 447 (454)
T ss_dssp CEEEES
T ss_pred cEEEEC
Confidence 887643
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=303.54 Aligned_cols=239 Identities=21% Similarity=0.312 Sum_probs=200.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++.+|+++.++++++++.+.+.
T Consensus 22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 101 (302)
T 1w6u_A 22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV 101 (302)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999888888777544 557889999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+.++.|+||++||.++..+.++...|++||
T Consensus 102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK 181 (302)
T 1w6u_A 102 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAK 181 (302)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTCHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCCCcchhHHHH
Confidence 99999999999988777788899999999999999999999999999997555568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCC-CCCCCCChhhh-hhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTE-LLSHSTDRDVV-DKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~-~~~~~~~~~~~-~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
+|+++|+++++.+++++||+|++|+||++.|+ +.......... ... ......+..+|+|+|++++++++ +...+++
T Consensus 182 ~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~~~~l~~-~~~~~~~ 260 (302)
T 1w6u_A 182 AGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCS-DYASWIN 260 (302)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTSSCBCHHHHHHHHHHHTS-GGGTTCC
T ss_pred HHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCCcCCCCCHHHHHHHHHHHcC-CcccccC
Confidence 99999999999999999999999999999998 54332111111 111 11122356799999999999775 4344555
Q ss_pred ceEe
Q psy4557 948 SILI 951 (958)
Q Consensus 948 ~~~i 951 (958)
|..+
T Consensus 261 G~~~ 264 (302)
T 1w6u_A 261 GAVI 264 (302)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 5443
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=304.99 Aligned_cols=226 Identities=19% Similarity=0.255 Sum_probs=189.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||++|||+++|++|+++|++|++++|+.++++++.+ +...+.++..+ |.++++++++++.+.+|++|+
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~~~~~~~~-----d~~~v~~~~~~~~~~~g~iD~ 75 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETYPQLKPM-----SEQEPAELIEAVTSAYGQVDV 75 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHHCTTSEEC-----CCCSHHHHHHHHHHHHSCCCE
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhcCCcEEEE-----CHHHHHHHHHHHHHHhCCCCE
Confidence 689999999999999999999999999999999988887765 54444444333 677889999999999999999
Q ss_pred EEEccccC-CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 797 LVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 797 lInnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
||||||+. ...++.+.+.++|++++++|+.|+++++++++|.|.++ +.|+|||+||.++..+.++...|++||+|+++
T Consensus 76 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~ 154 (254)
T 1zmt_A 76 LVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR-KSGHIIFITSATPFGPWKELSTYTSARAGACT 154 (254)
T ss_dssp EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCSTTTSCCTTCHHHHHHHHHHHH
T ss_pred EEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECCcccccCCCCchHHHHHHHHHHH
Confidence 99999998 66778899999999999999999999999999999744 46899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcc---------cCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDV---------KTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v---------~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
|+++++.|++++||+||+|+||+| +|+|.... ++...... .....+..+|+|+|+.++|+++ +...+
T Consensus 155 ~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~--~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s-~~~~~ 231 (254)
T 1zmt_A 155 LANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTN--PEHVAHVKKVTALQRLGTQKELGELVAFLAS-GSCDY 231 (254)
T ss_dssp HHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTC--HHHHHHHHHHSSSSSCBCHHHHHHHHHHHHT-TSCGG
T ss_pred HHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccC--hHHHHHHhccCCCCCCcCHHHHHHHHHHHhC-cccCC
Confidence 999999999999999999999999 77664321 11111111 1123457899999999999776 44567
Q ss_pred ccceEec
Q psy4557 946 VNSILIE 952 (958)
Q Consensus 946 i~~~~i~ 952 (958)
++|..+.
T Consensus 232 ~tG~~~~ 238 (254)
T 1zmt_A 232 LTGQVFW 238 (254)
T ss_dssp GTTCEEE
T ss_pred ccCCEEE
Confidence 7776654
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=296.42 Aligned_cols=236 Identities=24% Similarity=0.347 Sum_probs=199.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.++++|+++||||++|||+++|++|+++|++|++++|+.+.++++.+++... +++.++.+|+++.++++++++++.+.+
T Consensus 12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 90 (278)
T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP-DVISFVHCDVTKDEDVRNLVDTTIAKH 90 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCC-CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999999999988888777776432 368899999999999999999999999
Q ss_pred CCccEEEEccccCCC--ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC-CChhhhH
Q psy4557 792 GHIDILVNNAGVMYF--TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA-GLAVYTG 868 (958)
Q Consensus 792 g~iDilInnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~-~~~~Y~a 868 (958)
|++|+||||||+... .++.+.+.++|++++++|+.|++.+++.++|.|.+ ++.|+||++||.++..+.+ +...|++
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~isS~~~~~~~~~~~~~Y~~ 169 (278)
T 2bgk_A 91 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIP-AKKGSIVFTASISSFTAGEGVSHVYTA 169 (278)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGG-GTCEEEEEECCGGGTCCCTTSCHHHHH
T ss_pred CCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhh-cCCCeEEEEeeccccCCCCCCCcchHH
Confidence 999999999998643 56778899999999999999999999999999974 3468999999999998888 8889999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhhhhhhcc---ccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDVVDKYDI---SKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~~~~---~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
||+++++|+++++.|++++||+|++|+||++.|++...... ......+.. ....++.+|+|+|++++++++.+ .
T Consensus 170 sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~ 248 (278)
T 2bgk_A 170 TKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAYLAGDE-S 248 (278)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSGG-G
T ss_pred HHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcccccccccCCHHHHHHHHHHHcCcc-c
Confidence 99999999999999999999999999999999998764321 111111111 11235789999999999987643 3
Q ss_pred ccccceE
Q psy4557 944 SAVNSIL 950 (958)
Q Consensus 944 ~~i~~~~ 950 (958)
.+++|..
T Consensus 249 ~~~~G~~ 255 (278)
T 2bgk_A 249 KYVSGLN 255 (278)
T ss_dssp TTCCSCE
T ss_pred ccCCCCE
Confidence 4555543
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=300.21 Aligned_cols=237 Identities=21% Similarity=0.269 Sum_probs=197.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++.+ .+.++.++.+|+++.++++++++++.+.+
T Consensus 11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 90 (265)
T 1h5q_A 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL 90 (265)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999987666555555532 24568889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC-------Ch
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG-------LA 864 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~-------~~ 864 (958)
+++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+++..|+||++||..+..+.+. ..
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~ 170 (265)
T 1h5q_A 91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQV 170 (265)
T ss_dssp CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEECSCH
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccccccccccc
Confidence 99999999999987777888999999999999999999999999999975544589999999988766542 78
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
.|++||+|+++|+++++.|++++||+|++|+||+|.|++..... +....... .....++.+|+|+|+.++++++.+ .
T Consensus 171 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~ 248 (265)
T 1h5q_A 171 FYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMD-KKIRDHQASNIPLNRFAQPEEMTGQAILLLSDH-A 248 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC-HHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGG-G
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccccccc-hhHHHHHHhcCcccCCCCHHHHHHHHHhhccCc-h
Confidence 89999999999999999999999999999999999999865432 21111111 112235679999999999987643 3
Q ss_pred ccccceEe
Q psy4557 944 SAVNSILI 951 (958)
Q Consensus 944 ~~i~~~~i 951 (958)
.+++|..+
T Consensus 249 ~~~~G~~~ 256 (265)
T 1h5q_A 249 TYMTGGEY 256 (265)
T ss_dssp TTCCSCEE
T ss_pred hcCcCcEE
Confidence 45555443
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=302.17 Aligned_cols=222 Identities=27% Similarity=0.416 Sum_probs=186.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++.+|++|+++++++++.+.+
T Consensus 3 ~m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (267)
T 2gdz_A 3 HMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD 82 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999998888877777543 34688899999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCcEEEEecCccCcCCCCCChhhh
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR--RPGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~--~~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
.+|++|+||||||+.. .++|++++++|+.|++.+++.++|.|.+.+ ..|+||++||.++..+.++.+.|+
T Consensus 83 ~~g~id~lv~~Ag~~~--------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~ 154 (267)
T 2gdz_A 83 HFGRLDILVNNAGVNN--------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYC 154 (267)
T ss_dssp HHSCCCEEEECCCCCC--------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHH
T ss_pred HcCCCCEEEECCCCCC--------hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCCCCchHH
Confidence 9999999999999752 356999999999999999999999997432 258999999999999999999999
Q ss_pred HHHHHHHHHHHHH--HHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-------c-cccCCCCCCHHHHHHHHHHH
Q psy4557 868 GTKYFIEGISGAL--RQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-------D-ISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 868 asKaa~~~l~~~l--a~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-------~-~~~~~~~~~p~~ia~~i~~~ 937 (958)
+||+|+++|++++ +.|++++|||||+|+||+|.|+|............+ . .....+..+|+|+|+.++|+
T Consensus 155 ~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l 234 (267)
T 2gdz_A 155 ASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITL 234 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHHHHhccccCCCHHHHHHHHHHH
Confidence 9999999999995 689999999999999999999985432111111000 0 00112467999999999998
Q ss_pred hcCC
Q psy4557 938 LLQP 941 (958)
Q Consensus 938 l~~~ 941 (958)
++++
T Consensus 235 ~s~~ 238 (267)
T 2gdz_A 235 IEDD 238 (267)
T ss_dssp HHCT
T ss_pred hcCc
Confidence 8765
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=300.99 Aligned_cols=239 Identities=21% Similarity=0.314 Sum_probs=202.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+ .++++++.+++...+.++.++.+|++++++++++++++.+.
T Consensus 3 ~~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (258)
T 3afn_B 3 PDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAK 82 (258)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999 88888888888766678889999999999999999999999
Q ss_pred cCCccEEEEcccc-CCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC----CCcEEEEecCccCcC-CCCCCh
Q psy4557 791 LGHIDILVNNAGV-MYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR----RPGHILNISSNAGVR-PFAGLA 864 (958)
Q Consensus 791 ~g~iDilInnAG~-~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~----~~g~IV~isS~~g~~-~~~~~~ 864 (958)
+|++|+||||||+ ....++.+.+.++|++++++|+.|++.+++.++|.|.+.. ..|+||++||..+.. +.++..
T Consensus 83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~ 162 (258)
T 3afn_B 83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAG 162 (258)
T ss_dssp HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCCTTCH
T ss_pred cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCCCCch
Confidence 9999999999998 5566778889999999999999999999999999997432 128999999999887 888999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
.|++||+++++|+++++.|++++||+||+|+||++.|++.... .+....... .....+..+|+|+|++++++++.+..
T Consensus 163 ~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~ 241 (258)
T 3afn_B 163 LYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK-TQDVRDRISNGIPMGRFGTAEEMAPAFLFFASHLAS 241 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC-CHHHHHHHHTTCTTCSCBCGGGTHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc-CHHHHHHHhccCCCCcCCCHHHHHHHHHHHhCcchh
Confidence 9999999999999999999999999999999999999986543 222211111 11223568999999999998764432
Q ss_pred ccccceEe
Q psy4557 944 SAVNSILI 951 (958)
Q Consensus 944 ~~i~~~~i 951 (958)
.+++|..+
T Consensus 242 ~~~~G~~~ 249 (258)
T 3afn_B 242 GYITGQVL 249 (258)
T ss_dssp TTCCSEEE
T ss_pred ccccCCEE
Confidence 25555443
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=294.96 Aligned_cols=233 Identities=22% Similarity=0.327 Sum_probs=200.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.++.++.+|++++++++++++++.+.++
T Consensus 8 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999999999999999988888888876667788999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||.....++ +.+.++|++++++|+.|++++++.++|.|.+. +.|+||++||.++..+.++...|++||++
T Consensus 88 ~~d~vi~~Ag~~~~~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a 165 (255)
T 1fmc_A 88 KVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKN-GGGVILTITSMAAENKNINMTSYASSKAA 165 (255)
T ss_dssp SCCEEEECCCCCCCCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTCCCTTCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhcCCCCCCcccHHHHHH
Confidence 99999999998766555 78899999999999999999999999999743 46899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
++.|+++++.|++++||+||+|+||++.|++......+....... .....++.+|+|+|+++++++..+ ..++++
T Consensus 166 ~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G 241 (255)
T 1fmc_A 166 ASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPA-ASWVSG 241 (255)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHHHHHHHHHHHSGG-GTTCCS
T ss_pred HHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhccChHHHHHHHhcCCcccCCCHHHHHHHHHHHhCCc-cccCCC
Confidence 999999999999999999999999999999765432222222111 112235679999999999987543 334554
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=303.56 Aligned_cols=223 Identities=25% Similarity=0.358 Sum_probs=190.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC-CcEEEEEecCCCH-HHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP-GSIIVKKLDVTIE-NDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dvs~~-~~v~~~~~~~~~~ 790 (958)
.+++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+ .++.++.+|+++. ++++++++.+.+.
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999888887654 4688999999998 9999999999999
Q ss_pred cCCccEEEEccccCCC------------------------------ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4557 791 LGHIDILVNNAGVMYF------------------------------TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSML 840 (958)
Q Consensus 791 ~g~iDilInnAG~~~~------------------------------~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~ 840 (958)
+|++|+||||||+... ..+.+.+.++|++++++|+.|++++++.++|.|.
T Consensus 89 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~ 168 (311)
T 3o26_A 89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQ 168 (311)
T ss_dssp HSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhc
Confidence 9999999999998742 2345678999999999999999999999999997
Q ss_pred hCCCCcEEEEecCccCcCCC-------------------------------------------CCChhhhHHHHHHHHHH
Q psy4557 841 HSRRPGHILNISSNAGVRPF-------------------------------------------AGLAVYTGTKYFIEGIS 877 (958)
Q Consensus 841 ~~~~~g~IV~isS~~g~~~~-------------------------------------------~~~~~Y~asKaa~~~l~ 877 (958)
+ ++.|+||++||.++..+. ++...|++||+|+++|+
T Consensus 169 ~-~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~ 247 (311)
T 3o26_A 169 L-SDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYT 247 (311)
T ss_dssp T-SSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHH
T ss_pred c-CCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHH
Confidence 4 456899999999987653 45678999999999999
Q ss_pred HHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEecCC
Q psy4557 878 GALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIEPP 954 (958)
Q Consensus 878 ~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~p~ 954 (958)
++|+.|+.+ |+||+|+||+|+|+|.... ...+|++.|+.+++++..|.. ..++.+.+..
T Consensus 248 ~~la~e~~~--i~v~~v~PG~v~T~~~~~~---------------~~~~~~~~a~~~~~~~~~~~~-~~~g~~~~~s 306 (311)
T 3o26_A 248 RVLANKIPK--FQVNCVCPGLVKTEMNYGI---------------GNYTAEEGAEHVVRIALFPDD-GPSGFFYDCS 306 (311)
T ss_dssp HHHHHHCTT--SEEEEECCCSBCSGGGTTC---------------CSBCHHHHHHHHHHHHTCCSS-CCCSCEETC-
T ss_pred HHHHhhcCC--ceEEEecCCceecCCcCCC---------------CCCCHHHHHHHHHHHHhCCCC-CCCceEeccc
Confidence 999999964 9999999999999986432 235899999999998877653 4455555543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=300.27 Aligned_cols=220 Identities=23% Similarity=0.380 Sum_probs=197.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+.++.++.+|+++.++++++++++.+.+|
T Consensus 28 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG 107 (272)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 47899999999999999999999999999999999999999888888877667888999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+. +.|+||++||.++..+.++...|++||+|
T Consensus 108 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~~~~~~~~~~~Y~~sK~a 186 (272)
T 1yb1_A 108 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAGHVSVPFLLAYCSSKFA 186 (272)
T ss_dssp CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-CCCHHHHHHHHHHHHH
T ss_pred CCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEechhhcCCCCCchhHHHHHHH
Confidence 99999999999877777788899999999999999999999999999744 46899999999999888888999999999
Q ss_pred HHHHHHHHHHHhC---CCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 873 IEGISGALRQEVS---DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 873 ~~~l~~~la~el~---~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+++|+++++.|+. +.||+|++|+||+|+|+|... . .. ...+..+|+|+|+.+++++.++..
T Consensus 187 ~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~--~---~~-----~~~~~~~~~dva~~i~~~~~~~~~ 250 (272)
T 1yb1_A 187 AVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN--P---ST-----SLGPTLEPEEVVNRLMHGILTEQK 250 (272)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC--T---HH-----HHCCCCCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc--c---cc-----cccCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999996 779999999999999998542 1 00 113568999999999999887654
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=300.45 Aligned_cols=237 Identities=23% Similarity=0.394 Sum_probs=199.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-----CCCcEEEEEecCCCHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-----APGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-----~~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
..++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.. .+.++.++.+|+++.+++++++++
T Consensus 14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 93 (303)
T 1yxm_A 14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 93 (303)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999888888765 356788999999999999999999
Q ss_pred HHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhh
Q psy4557 787 VLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVY 866 (958)
Q Consensus 787 ~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y 866 (958)
+.+.+|++|+||||||+....++.+.+.++|++++++|+.|++.++++++|.|.+. ..|+||++||.+ ..+.++...|
T Consensus 94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~-~~~~~~~~~Y 171 (303)
T 1yxm_A 94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKE-HGGSIVNIIVPT-KAGFPLAVHS 171 (303)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECCCC-TTCCTTCHHH
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cCCeEEEEEeec-ccCCCcchhh
Confidence 99999999999999998777778888999999999999999999999999976533 358999999998 7788899999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC---hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD---RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~---~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+++|+|+.+|+++++.|+.++||+||+|+||+|.|++...... ....... ......++.+|+|+|+.++|+++. .
T Consensus 172 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~l~~~-~ 250 (303)
T 1yxm_A 172 GAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSP-A 250 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSG-G
T ss_pred HHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcCcccCCCCHHHHHHHHHHHhCc-c
Confidence 9999999999999999999999999999999999995321111 1111111 111223578999999999998754 3
Q ss_pred CccccceEe
Q psy4557 943 HSAVNSILI 951 (958)
Q Consensus 943 ~~~i~~~~i 951 (958)
..+++|..+
T Consensus 251 ~~~~~G~~~ 259 (303)
T 1yxm_A 251 ASFITGQSV 259 (303)
T ss_dssp GTTCCSCEE
T ss_pred cccCCCcEE
Confidence 445655444
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=308.10 Aligned_cols=222 Identities=21% Similarity=0.340 Sum_probs=190.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEE---------ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV---------ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKV 783 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~---------~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~ 783 (958)
+++||++|||||++|||+++|++|+++|++|+++ +|+.++++++.+++...++.. .+|+++.++++++
T Consensus 6 ~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~---~~D~~~~~~~~~~ 82 (319)
T 1gz6_A 6 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKA---VANYDSVEAGEKL 82 (319)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEE---EEECCCGGGHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeE---EEeCCCHHHHHHH
Confidence 4789999999999999999999999999999996 557788888888887655433 4799999999999
Q ss_pred HHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC
Q psy4557 784 VREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863 (958)
Q Consensus 784 ~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~ 863 (958)
++++.+.+|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|+|.++ +.|+||++||.++..+.++.
T Consensus 83 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~grIV~vsS~~~~~~~~~~ 161 (319)
T 1gz6_A 83 VKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ-NYGRIIMTASASGIYGNFGQ 161 (319)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHHCCTTC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECChhhccCCCCC
Confidence 99999999999999999999877778889999999999999999999999999999754 46999999999999888999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
..|++||+|+.+|+++|+.|++++||+||+|+||++ |+|......... ....+|+++|..++|+++.+.
T Consensus 162 ~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~~~~~---------~~~~~p~dvA~~~~~l~s~~~- 230 (319)
T 1gz6_A 162 ANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVMPEDL---------VEALKPEYVAPLVLWLCHESC- 230 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGSCHHH---------HHHSCGGGTHHHHHHHTSTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccCChhh---------hccCCHHHHHHHHHHHhCchh-
Confidence 999999999999999999999999999999999998 887542111110 113689999999999887543
Q ss_pred ccccceE
Q psy4557 944 SAVNSIL 950 (958)
Q Consensus 944 ~~i~~~~ 950 (958)
+++|..
T Consensus 231 -~~tG~~ 236 (319)
T 1gz6_A 231 -EENGGL 236 (319)
T ss_dssp -CCCSCE
T ss_pred -hcCCCE
Confidence 444443
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=295.28 Aligned_cols=233 Identities=21% Similarity=0.320 Sum_probs=197.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcE-EEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI-IVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~-~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++. .++ .++.+|+++.++++++++++.+ +
T Consensus 8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~-~ 83 (254)
T 2wsb_A 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELG---AAVAARIVADVTDAEAMTAAAAEAEA-V 83 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---GGEEEEEECCTTCHHHHHHHHHHHHH-H
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---ccceeEEEEecCCHHHHHHHHHHHHh-h
Confidence 4789999999999999999999999999999999999988888777762 356 7889999999999999999988 9
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC--hhhhHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL--AVYTGT 869 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~--~~Y~as 869 (958)
+++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+. +.|+||++||.++..+.++. ..|++|
T Consensus 84 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~isS~~~~~~~~~~~~~~Y~~s 162 (254)
T 2wsb_A 84 APVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVAR-GAGAIVNLGSMSGTIVNRPQFASSYMAS 162 (254)
T ss_dssp SCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCSSSCBHHHHHH
T ss_pred CCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEecchhccCCCCCcchHHHHH
Confidence 999999999999877778888999999999999999999999999999754 46899999999998888887 899999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
|+++++|+++++.|++++||+|++|+||++.|++..... .+....... .....+..+|+|+|+.++++++. ...+++
T Consensus 163 K~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~ 241 (254)
T 2wsb_A 163 KGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGEPSEIAAAALFLASP-AASYVT 241 (254)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSG-GGTTCC
T ss_pred HHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-cccccc
Confidence 999999999999999999999999999999999754211 111111111 11223568999999999997764 344566
Q ss_pred ceEe
Q psy4557 948 SILI 951 (958)
Q Consensus 948 ~~~i 951 (958)
|..+
T Consensus 242 G~~~ 245 (254)
T 2wsb_A 242 GAIL 245 (254)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 6554
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=298.83 Aligned_cols=218 Identities=13% Similarity=0.106 Sum_probs=188.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc--
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL-- 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-- 791 (958)
|++|+++||||++|||+++|++|+++|++|++++|+.++++ .....+.+|+++.++++++++++.+.+
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 70 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA----------DSNILVDGNKNWTEQEQSILEQTASSLQG 70 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS----------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc----------cccEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999999999999976432 135677899999999999999999999
Q ss_pred CCccEEEEccccCCCccc-cCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVMYFTLM-EKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~-~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
|++|+||||||+....++ .+.+.++|++++++|+.|++++++.++|.|.+ .|+||++||.++..+.++...|++||
T Consensus 71 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~g~iv~isS~~~~~~~~~~~~Y~~sK 147 (236)
T 1ooe_A 71 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP---GGLLQLTGAAAAMGPTPSMIGYGMAK 147 (236)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEECCGGGGSCCTTBHHHHHHH
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc---CCEEEEECchhhccCCCCcHHHHHHH
Confidence 799999999999876666 67888999999999999999999999999952 48999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC--CCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 871 YFIEGISGALRQEVS--DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 871 aa~~~l~~~la~el~--~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+|+++|+++++.|++ ++||+||+|+||+|+|+|........ ...+..+|+|+|+.+++++.++...+++|
T Consensus 148 ~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~--------~~~~~~~~~dvA~~i~~~l~s~~~~~~~G 219 (236)
T 1ooe_A 148 AAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWMPNA--------DHSSWTPLSFISEHLLKWTTETSSRPSSG 219 (236)
T ss_dssp HHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHHSTTC--------CGGGCBCHHHHHHHHHHHHHCGGGCCCTT
T ss_pred HHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcchhhcCCCc--------cccccCCHHHHHHHHHHHHcCCCcccccc
Confidence 999999999999998 99999999999999999753211000 01234689999999997776777777777
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..+.
T Consensus 220 ~~~~ 223 (236)
T 1ooe_A 220 ALLK 223 (236)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 7653
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=294.14 Aligned_cols=233 Identities=23% Similarity=0.364 Sum_probs=198.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEE-EEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIV-KKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~-~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+|+++||||++|||+++|++|+++|++|+++ +|+.++++++.+++...+.++.. +.+|+++.++++++++++.+.+++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG 80 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999998 89998888888877666556666 899999999999999999999999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+. +.|+||++||.++..+.++...|++||+++
T Consensus 81 ~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~ 159 (245)
T 2ph3_A 81 LDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKA-RFGRIVNITSVVGILGNPGQANYVASKAGL 159 (245)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHHCCSSBHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc-CCCEEEEEeChhhccCCCCCcchHHHHHHH
Confidence 9999999999877778889999999999999999999999999999743 458999999999988889999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
++|+++++.|+++.||+|++|+||++.|++..... ......+. .....++.+|+|+|+.++++++.+ ..+++|..+
T Consensus 160 ~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~ 236 (245)
T 2ph3_A 160 IGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLP-QEVKEAYLKQIPAGRFGRPEEVAEAVAFLVSEK-AGYITGQTL 236 (245)
T ss_dssp HHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSC-HHHHHHHHHTCTTCSCBCHHHHHHHHHHHTSGG-GTTCCSCEE
T ss_pred HHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhcC-HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcc-cccccCCEE
Confidence 99999999999999999999999999999865422 11111111 112235679999999999987653 345555443
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=299.68 Aligned_cols=218 Identities=12% Similarity=0.073 Sum_probs=186.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL- 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~- 791 (958)
+.++|+++||||++|||+++|++|+++|++|++++|+.++++ .....+.+|++++++++++++++.+.+
T Consensus 4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~----------~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 73 (241)
T 1dhr_A 4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA----------SASVIVKMTDSFTEQADQVTAEVGKLLG 73 (241)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS----------SEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc----------CCcEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999999999976432 235677899999999999999999999
Q ss_pred -CCccEEEEccccCCCccc-cCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 792 -GHIDILVNNAGVMYFTLM-EKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 792 -g~iDilInnAG~~~~~~~-~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
|++|+||||||+....++ .+.+.++|++++++|+.|++.+++.++|.|.+ +|+||++||.++..+.++...|++|
T Consensus 74 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~---~g~iv~isS~~~~~~~~~~~~Y~as 150 (241)
T 1dhr_A 74 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE---GGLLTLAGAKAALDGTPGMIGYGMA 150 (241)
T ss_dssp TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEECCGGGGSCCTTBHHHHHH
T ss_pred CCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc---CCEEEEECCHHHccCCCCchHHHHH
Confidence 799999999999876677 77889999999999999999999999999952 4899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC--CCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 870 KYFIEGISGALRQEVS--DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 870 Kaa~~~l~~~la~el~--~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
|+|+++|+++++.|++ ++||+||+|+||+|+|+|........ ...+..+|+|+|+.++++++ +...+++
T Consensus 151 K~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~--------~~~~~~~~~~vA~~v~~l~~-~~~~~~~ 221 (241)
T 1dhr_A 151 KGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPEA--------DFSSWTPLEFLVETFHDWIT-GNKRPNS 221 (241)
T ss_dssp HHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHSTTS--------CGGGSEEHHHHHHHHHHHHT-TTTCCCT
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCccccccCcch--------hhccCCCHHHHHHHHHHHhc-CCCcCcc
Confidence 9999999999999999 99999999999999999853211100 01124578999999999775 4555667
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..+.
T Consensus 222 G~~~~ 226 (241)
T 1dhr_A 222 GSLIQ 226 (241)
T ss_dssp TCEEE
T ss_pred ceEEE
Confidence 66553
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=294.84 Aligned_cols=222 Identities=23% Similarity=0.306 Sum_probs=181.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..++||+++||||++|||+++|++|+++|++|++++|+.+.+++ + +...++ +|+ .++++++++++
T Consensus 15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~----~----~~~~~~-~D~--~~~~~~~~~~~---- 79 (249)
T 1o5i_A 15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR----S----GHRYVV-CDL--RKDLDLLFEKV---- 79 (249)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH----T----CSEEEE-CCT--TTCHHHHHHHS----
T ss_pred hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHh----h----CCeEEE-eeH--HHHHHHHHHHh----
Confidence 56899999999999999999999999999999999999743332 2 246667 999 45666665544
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
.++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+. +.|+||++||.++..+.++...|++||+
T Consensus 80 ~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~~sK~ 158 (249)
T 1o5i_A 80 KEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAITSFSVISPIENLYTSNSARM 158 (249)
T ss_dssp CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcchHhcCCCCCCchHHHHHH
Confidence 489999999999877788899999999999999999999999999999754 4689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhh-hh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVD-KY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~-~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+++|+++++.|++++||+||+|+||++.|+|....... ... .+ ......++.+|+|+|+.++|+++ +...+++|.
T Consensus 159 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~p~~~~~~~~dvA~~i~~l~s-~~~~~~tG~ 236 (249)
T 1o5i_A 159 ALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSE-EKKKQVESQIPMRRMAKPEEIASVVAFLCS-EKASYLTGQ 236 (249)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCH-HHHHHHHTTSTTSSCBCHHHHHHHHHHHHS-GGGTTCCSC
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccchh-hHHHHHHhcCCCCCCcCHHHHHHHHHHHcC-ccccCCCCC
Confidence 999999999999999999999999999999986432111 111 11 11122456799999999999776 444566665
Q ss_pred Ee
Q psy4557 950 LI 951 (958)
Q Consensus 950 ~i 951 (958)
.+
T Consensus 237 ~~ 238 (249)
T 1o5i_A 237 TI 238 (249)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=290.84 Aligned_cols=207 Identities=22% Similarity=0.230 Sum_probs=176.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++++|+++||||++|||+++|++|+++|++|++++|+.+ +|+++++++++++++ +|
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------------~D~~~~~~v~~~~~~----~g 58 (223)
T 3uce_A 3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--------------------LDISDEKSVYHYFET----IG 58 (223)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------------CCTTCHHHHHHHHHH----HC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------------cCCCCHHHHHHHHHH----hC
Confidence 468999999999999999999999999999999999864 899999999888865 48
Q ss_pred CccEEEEccccC-CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 793 HIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 793 ~iDilInnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
++|+||||||+. ...++.+.+.++|++++++|+.|++++++.++|.|.+ +|+||++||.++..+.++...|++||+
T Consensus 59 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~---~g~iv~~sS~~~~~~~~~~~~Y~asK~ 135 (223)
T 3uce_A 59 AFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQ---GGSITLTSGMLSRKVVANTYVKAAINA 135 (223)
T ss_dssp SEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEE---EEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccC---CeEEEEecchhhccCCCCchHHHHHHH
Confidence 999999999987 5677889999999999999999999999999999852 489999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhh---hhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVV---DKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~---~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
|+++|+++|+.|+++ ||||+|+||+|+|+|.......... ... ......++.+|+|+|++++|+++. .+++
T Consensus 136 a~~~~~~~la~e~~~--i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~---~~~t 210 (223)
T 3uce_A 136 AIEATTKVLAKELAP--IRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLPVGKVGEASDIAMAYLFAIQN---SYMT 210 (223)
T ss_dssp HHHHHHHHHHHHHTT--SEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHHC---TTCC
T ss_pred HHHHHHHHHHHhhcC--cEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCCCCCccCHHHHHHHHHHHccC---CCCC
Confidence 999999999999987 9999999999999997654322111 111 112334678999999999998863 4566
Q ss_pred ceEe
Q psy4557 948 SILI 951 (958)
Q Consensus 948 ~~~i 951 (958)
|..+
T Consensus 211 G~~i 214 (223)
T 3uce_A 211 GTVI 214 (223)
T ss_dssp SCEE
T ss_pred CcEE
Confidence 6554
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=312.89 Aligned_cols=233 Identities=23% Similarity=0.338 Sum_probs=185.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhh------cCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ------NAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~------~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
+||+++||||++|||+++|++|+++|++|++++|+.++++++.+.+. ..+.++.++.+|+++.++++++++++
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~- 79 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV- 79 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHH-
Confidence 47899999999999999999999999999998887554443333322 22357889999999999999999988
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhH
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
.+|++|+||||||+....++.+.+.++|++++++|+.|++++++.++|+|.++ +.|+|||+||.++..+.++...|++
T Consensus 80 -~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-~~g~IV~isS~~~~~~~~~~~~Y~a 157 (327)
T 1jtv_A 80 -TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR-GSGRVLVTGSVGGLMGLPFNDVYCA 157 (327)
T ss_dssp -TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEEGGGTSCCTTCHHHHH
T ss_pred -hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCcccccCCCCChHHHH
Confidence 36899999999999877778889999999999999999999999999999743 4699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh----------hhhhhcc------ccCCC-CCCHHHHH
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD----------VVDKYDI------SKAVP-VLTTKEIS 931 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~----------~~~~~~~------~~~~~-~~~p~~ia 931 (958)
||+|+++|+++|+.|++++||+||+|+||+|+|+|........ ....+.. ....+ ..+|+|+|
T Consensus 158 SK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA 237 (327)
T 1jtv_A 158 SKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVA 237 (327)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHH
Confidence 9999999999999999999999999999999999965432110 0000000 00011 25899999
Q ss_pred HHHHHHhcCC--CCccccceE
Q psy4557 932 QSIIFALLQP--SHSAVNSIL 950 (958)
Q Consensus 932 ~~i~~~l~~~--~~~~i~~~~ 950 (958)
+.+++++.++ ...++++..
T Consensus 238 ~~i~~l~~~~~~~~~~~tg~~ 258 (327)
T 1jtv_A 238 EVFLTALRAPKPTLRYFTTER 258 (327)
T ss_dssp HHHHHHHHCSSCCSEEESCST
T ss_pred HHHHHHHcCCCCCeEEEeCch
Confidence 9999998764 455666543
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=298.50 Aligned_cols=216 Identities=16% Similarity=0.114 Sum_probs=186.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
..+|+++||||++|||+++|++|+++|++|++++|+.++++ ...+.+|++|.++++++++++.+.+|+
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~------------~~~~~~d~~d~~~v~~~~~~~~~~~g~ 87 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA------------DHSFTIKDSGEEEIKSVIEKINSKSIK 87 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS------------SEEEECSCSSHHHHHHHHHHHHTTTCC
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc------------ccceEEEeCCHHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999999999999999976432 124678999999999999999999999
Q ss_pred ccEEEEccccCCCcc-ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 794 IDILVNNAGVMYFTL-MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 794 iDilInnAG~~~~~~-~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+|+||||||+..... +.+.+.++|++++++|+.|++.++++++|.|.+ +|+||++||.++..+.++...|++||+|
T Consensus 88 iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~g~iv~isS~~~~~~~~~~~~Y~~sKaa 164 (251)
T 3orf_A 88 VDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQ---GGLFVLTGASAALNRTSGMIAYGATKAA 164 (251)
T ss_dssp EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEECCGGGGSCCTTBHHHHHHHHH
T ss_pred CCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhcc---CCEEEEEechhhccCCCCCchhHHHHHH
Confidence 999999999876654 677889999999999999999999999999952 4899999999999999999999999999
Q ss_pred HHHHHHHHHHHhC--CCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVS--DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~--~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+++|+++++.|++ ++||+||+|+||+|+|+|....... ....+..+|+|+|+.++++++++...+++|..
T Consensus 165 ~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~~~~~~~--------~~~~~~~~~~dva~~i~~l~~~~~~~~~tG~~ 236 (251)
T 3orf_A 165 THHIIKDLASENGGLPAGSTSLGILPVTLDTPTNRKYMSD--------ANFDDWTPLSEVAEKLFEWSTNSDSRPTNGSL 236 (251)
T ss_dssp HHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHHHHHCTT--------SCGGGSBCHHHHHHHHHHHHHCGGGCCCTTCE
T ss_pred HHHHHHHHHHHhcccCCCcEEEEEecCcCcCcchhhhccc--------ccccccCCHHHHHHHHHHHhcCccccCCcceE
Confidence 9999999999987 8999999999999999975321111 11224678999999999998875677788876
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
+.
T Consensus 237 i~ 238 (251)
T 3orf_A 237 VK 238 (251)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=311.06 Aligned_cols=237 Identities=24% Similarity=0.299 Sum_probs=157.5
Q ss_pred CCCCCCEEEEEcC--CchHHHHHHHHHHHcCCeEEEEecCh-----------hhHH-----------HHHHHhhcCCCc-
Q psy4557 712 NTLANKVIFVTGS--SSGIGEQLVKDLVTLGAKVVAVARRI-----------DRLE-----------NLKTSLQNAPGS- 766 (958)
Q Consensus 712 ~~l~~k~~lITGa--s~GIG~aia~~la~~Ga~Vi~~~r~~-----------~~l~-----------~~~~~l~~~~~~- 766 (958)
.+|+||++||||| ++|||+++|++|+++|++|++++|+. ++++ ++.+++...+..
T Consensus 5 ~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (319)
T 2ptg_A 5 VDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDL 84 (319)
T ss_dssp CCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccc
Confidence 4578999999999 89999999999999999999998753 2222 223333322211
Q ss_pred --EEEEEec------------CCC--------HHHHHHHHHHHHHHcCCccEEEEccccCC--CccccCCCHHHHHHHHH
Q psy4557 767 --IIVKKLD------------VTI--------ENDVKKVVREVLAELGHIDILVNNAGVMY--FTLMEKYKLEEWNAMIN 822 (958)
Q Consensus 767 --~~~~~~D------------vs~--------~~~v~~~~~~~~~~~g~iDilInnAG~~~--~~~~~~~~~~~~~~~~~ 822 (958)
..++.+| +++ +++++++++++.+.+|++|+||||||+.. ..++.+.+.++|+++++
T Consensus 85 ~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~ 164 (319)
T 2ptg_A 85 VFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVS 164 (319)
T ss_dssp CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHH
T ss_pred cccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHh
Confidence 1333333 333 45899999999999999999999999863 56788899999999999
Q ss_pred HHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC-hhhhHHHHHHHHHHHHHHHHhCC-CCcEEEEEECCccc
Q psy4557 823 VNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL-AVYTGTKYFIEGISGALRQEVSD-RNIKVTCIQAGDVK 900 (958)
Q Consensus 823 vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~-~~Y~asKaa~~~l~~~la~el~~-~gIrv~~v~PG~v~ 900 (958)
+|+.|++++++.++|+|.+ +|+|||+||.++..+.++. ..|++||+|+.+|+++|+.|+++ +|||||+|+||+|+
T Consensus 165 vN~~g~~~l~~~~~~~m~~---~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~ 241 (319)
T 2ptg_A 165 SSSYSFVSLLQHFLPLMKE---GGSALALSYIASEKVIPGYGGGMSSAKAALESDCRTLAFEAGRARAVRVNCISAGPLK 241 (319)
T ss_dssp HHTHHHHHHHHHHGGGEEE---EEEEEEEEECC------------------THHHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_pred HhhHHHHHHHHHHHHHHhc---CceEEEEeccccccccCccchhhHHHHHHHHHHHHHHHHHhccccCeeEEEEeeCCcc
Confidence 9999999999999999963 3899999999999998888 68999999999999999999985 89999999999999
Q ss_pred CCCCCCCCC---hhhhhh----h-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 901 TELLSHSTD---RDVVDK----Y-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 901 T~~~~~~~~---~~~~~~----~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
|+|...... +..... . ......++.+|+|+|..++|+++ +...+++|..|.
T Consensus 242 T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s-~~~~~itG~~i~ 300 (319)
T 2ptg_A 242 SRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAALFLLS-PLARAVTGATLY 300 (319)
T ss_dssp -------------------------------CCCHHHHHHHHHHHTS-GGGTTCCSCEEE
T ss_pred ChhhhhcccccchhhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC-cccCCccCCEEE
Confidence 998654211 000000 0 01122357899999999999765 556777776653
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=286.99 Aligned_cols=229 Identities=23% Similarity=0.337 Sum_probs=190.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++. ...++.+|+++.++++++++ .+|
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~----~~~ 75 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERALG----SVG 75 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHT----TCC
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC----CCCEEEEeCCCHHHHHHHHH----HcC
Confidence 5789999999999999999999999999999999999988887766542 24456899999999887775 678
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||+....++.+.+.++|++++++|+.|++++++.++|.|.+++..|+||++||.++..+.++...|++||+|
T Consensus 76 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a 155 (244)
T 3d3w_A 76 PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGA 155 (244)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHH
T ss_pred CCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCCCCchHHHHHHH
Confidence 99999999999877778889999999999999999999999999999754336999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-CChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-TDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+++|+++++.|++++||+|++|+||+|.|++.... ..+...... ......+..+|+|+|++++++++++ ..+++|..
T Consensus 156 ~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~ 234 (244)
T 3d3w_A 156 LDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDR-SGMTTGST 234 (244)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCE
T ss_pred HHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHhhCCCCCCcCHHHHHHHHHHHcCcc-ccCCCCCE
Confidence 99999999999999999999999999999985421 111111111 1112345789999999999987643 34555543
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=304.77 Aligned_cols=224 Identities=20% Similarity=0.309 Sum_probs=179.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|+++.++++++++++
T Consensus 12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~~~---- 84 (291)
T 3rd5_A 12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM---AGQVEVRELDLQDLSSVRRFADGV---- 84 (291)
T ss_dssp CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS---SSEEEEEECCTTCHHHHHHHHHTC----
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---cCCeeEEEcCCCCHHHHHHHHHhc----
Confidence 4689999999999999999999999999999999999998888776655 467889999999999998888765
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC------------
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP------------ 859 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~------------ 859 (958)
+++|+||||||+... ..+.+.++|++++++|+.|+++++++++|.|. ++||++||.++..+
T Consensus 85 ~~iD~lv~nAg~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~-----~riv~isS~~~~~~~~~~~~~~~~~~ 157 (291)
T 3rd5_A 85 SGADVLINNAGIMAV--PYALTVDGFESQIGTNHLGHFALTNLLLPRLT-----DRVVTVSSMAHWPGRINLEDLNWRSR 157 (291)
T ss_dssp CCEEEEEECCCCCSC--CCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEE-----EEEEEECCGGGTTCCCCSSCTTCSSS
T ss_pred CCCCEEEECCcCCCC--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hheeEeechhhccCCCCccccccccc
Confidence 899999999998743 35567889999999999999999999999885 38999999998754
Q ss_pred -CCCChhhhHHHHHHHHHHHHHHHHhCCCC--cEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCC-CHHHHHHHHH
Q psy4557 860 -FAGLAVYTGTKYFIEGISGALRQEVSDRN--IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL-TTKEISQSII 935 (958)
Q Consensus 860 -~~~~~~Y~asKaa~~~l~~~la~el~~~g--Irv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-~p~~ia~~i~ 935 (958)
.++...|++||+|+++|+++|+.|++++| |+||+|+||+|+|+|........ ..........+.. +|+++|..++
T Consensus 158 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~ 236 (291)
T 3rd5_A 158 RYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKL-GDALMSAATRVVATDADFGARQTL 236 (291)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC---------------------CHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHH-HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34567899999999999999999999888 99999999999999976532211 1111111112233 4999999999
Q ss_pred HHhcCCCCccccceEecC
Q psy4557 936 FALLQPSHSAVNSILIEP 953 (958)
Q Consensus 936 ~~l~~~~~~~i~~~~i~p 953 (958)
|+++++ +++|..+.+
T Consensus 237 ~l~~~~---~~~G~~~~v 251 (291)
T 3rd5_A 237 YAASQD---LPGDSFVGP 251 (291)
T ss_dssp HHHHSC---CCTTCEEEE
T ss_pred HHHcCC---CCCCceeCC
Confidence 988874 677776653
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=331.37 Aligned_cols=225 Identities=24% Similarity=0.345 Sum_probs=179.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec---------ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR---------RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKK 782 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r---------~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~ 782 (958)
.+|+||++|||||++|||+++|++|+++|++|++++| +.+.++++.+++...+..+. +|+++.+++++
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~D~~d~~~~~~ 91 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAV---ADYNSVIDGAK 91 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEE---ECCCCGGGHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEE---EEeCCHHHHHH
Confidence 5789999999999999999999999999999999987 77788888888877665543 79999999999
Q ss_pred HHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC
Q psy4557 783 VVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG 862 (958)
Q Consensus 783 ~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~ 862 (958)
+++++.+.+|+||+||||||+....++.+.+.++|++++++|+.|+++++++++|+|++ ++.|+|||+||.++..+.++
T Consensus 92 ~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~-~~~g~IV~isS~a~~~~~~~ 170 (613)
T 3oml_A 92 VIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKK-QNYGRIIMTSSNSGIYGNFG 170 (613)
T ss_dssp HHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEEEECCHHHHHCCTT
T ss_pred HHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCEEEEECCHHHcCCCCC
Confidence 99999999999999999999988888899999999999999999999999999999984 45699999999999999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 863 LAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 863 ~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.+.|++||+|+.+|+++|+.|++++||+||+|+||++ |+|......... ....+|+++|..++|+++..
T Consensus 171 ~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~-t~~~~~~~~~~~---------~~~~~pedvA~~v~~L~s~~- 239 (613)
T 3oml_A 171 QVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA-SRMTEGILPDIL---------FNELKPKLIAPVVAYLCHES- 239 (613)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCCCHHH---------HTTCCGGGTHHHHHHTTSTT-
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC-Chhhhhccchhh---------hhcCCHHHHHHHHHHhcCCC-
Confidence 9999999999999999999999999999999999975 666544322211 12468999999999977655
Q ss_pred CccccceEec
Q psy4557 943 HSAVNSILIE 952 (958)
Q Consensus 943 ~~~i~~~~i~ 952 (958)
.+++|..+.
T Consensus 240 -~~~tG~~i~ 248 (613)
T 3oml_A 240 -CEDNGSYIE 248 (613)
T ss_dssp -CCCCSCEEE
T ss_pred -cCCCceEEE
Confidence 567776553
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=307.40 Aligned_cols=237 Identities=23% Similarity=0.258 Sum_probs=184.8
Q ss_pred cCCCCCCCEEEEEcC--CchHHHHHHHHHHHcCCeEEEEecChh-----------hHHHHHHHhhcCCCc---EEEEEec
Q psy4557 710 FGNTLANKVIFVTGS--SSGIGEQLVKDLVTLGAKVVAVARRID-----------RLENLKTSLQNAPGS---IIVKKLD 773 (958)
Q Consensus 710 ~~~~l~~k~~lITGa--s~GIG~aia~~la~~Ga~Vi~~~r~~~-----------~l~~~~~~l~~~~~~---~~~~~~D 773 (958)
+..+|+||++||||| ++|||+++|++|+++|++|++++|+.. +++++ +++.. +.. ...+.+|
T Consensus 3 ~~~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~d 80 (315)
T 2o2s_A 3 FPIDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDED-RKLPD-GSLIEFAGVYPLD 80 (315)
T ss_dssp -CCCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHH-HBCTT-SCBCCCSCEEECC
T ss_pred CcccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhh-hhhhc-ccccccccccccc
Confidence 334589999999999 899999999999999999999998641 22222 12211 111 1233333
Q ss_pred ------------CC--------CHHHHHHHHHHHHHHcCCccEEEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHH
Q psy4557 774 ------------VT--------IENDVKKVVREVLAELGHIDILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHC 831 (958)
Q Consensus 774 ------------vs--------~~~~v~~~~~~~~~~~g~iDilInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~ 831 (958)
++ ++++++++++++.+.+|++|+||||||+.. ..++.+.+.++|++++++|+.|++++
T Consensus 81 ~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l 160 (315)
T 2o2s_A 81 AAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSL 160 (315)
T ss_dssp TTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred ccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHH
Confidence 33 366899999999999999999999999863 56778899999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEecCccCcCCCCCC-hhhhHHHHHHHHHHHHHHHHhCC-CCcEEEEEECCcccCCCCCCCCC
Q psy4557 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGL-AVYTGTKYFIEGISGALRQEVSD-RNIKVTCIQAGDVKTELLSHSTD 909 (958)
Q Consensus 832 ~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~-~~Y~asKaa~~~l~~~la~el~~-~gIrv~~v~PG~v~T~~~~~~~~ 909 (958)
++.++|+|.+ +|+|||+||.++..+.+++ ..|++||+|+.+|+++|+.|+++ +|||||+|+||+|+|+|......
T Consensus 161 ~~~~~~~m~~---~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~ 237 (315)
T 2o2s_A 161 LQHFGPIMNE---GGSAVTLSYLAAERVVPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGK 237 (315)
T ss_dssp HHHHSTTEEE---EEEEEEEEEGGGTSCCTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhc---CCEEEEEecccccccCCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhhhhccc
Confidence 9999999962 3899999999999998888 58999999999999999999985 89999999999999998542211
Q ss_pred ---hhhhh----hh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 910 ---RDVVD----KY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 910 ---~~~~~----~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+.... .. ......+..+|+|+|..++|+++ +...+++|..|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s-~~~~~itG~~i~ 287 (315)
T 2o2s_A 238 SGEKSFIDYAIDYSYNNAPLRRDLHSDDVGGAALFLLS-PLARAVSGVTLY 287 (315)
T ss_dssp SSSSCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTS-GGGTTCCSCEEE
T ss_pred cccchhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC-chhccCcCCEEE
Confidence 00100 01 11233467899999999999765 666778876654
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-32 Score=301.08 Aligned_cols=233 Identities=21% Similarity=0.255 Sum_probs=182.7
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHHcCCeEEEEecChh-----------hHHHHHHHhhcCCC---cEEEEEec---
Q psy4557 713 TLANKVIFVTGSS--SGIGEQLVKDLVTLGAKVVAVARRID-----------RLENLKTSLQNAPG---SIIVKKLD--- 773 (958)
Q Consensus 713 ~l~~k~~lITGas--~GIG~aia~~la~~Ga~Vi~~~r~~~-----------~l~~~~~~l~~~~~---~~~~~~~D--- 773 (958)
+++||++|||||+ +|||+++|++|+++|++|++++|+.+ +++++ +++.. +. ....+.+|
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 82 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQS-RVLPD-GSLMEIKKVYPLDAVF 82 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTT-SSBCCEEEEEEECTTC
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhh-hhhcc-ccccccccccccceec
Confidence 5789999999999 99999999999999999999987632 11111 11111 11 12333443
Q ss_pred -----CC------------CHHHHHHHHHHHHHHcCCccEEEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHHHH
Q psy4557 774 -----VT------------IENDVKKVVREVLAELGHIDILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCIGN 834 (958)
Q Consensus 774 -----vs------------~~~~v~~~~~~~~~~~g~iDilInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~~~ 834 (958)
++ ++++++++++++.+.+|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++
T Consensus 83 ~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ 162 (297)
T 1d7o_A 83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH 162 (297)
T ss_dssp CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHH
Confidence 32 266899999999999999999999999754 56778899999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEecCccCcCCCCCC-hhhhHHHHHHHHHHHHHHHHhCC-CCcEEEEEECCcccCCCCCCCCC-hh
Q psy4557 835 ILPSMLHSRRPGHILNISSNAGVRPFAGL-AVYTGTKYFIEGISGALRQEVSD-RNIKVTCIQAGDVKTELLSHSTD-RD 911 (958)
Q Consensus 835 ~l~~m~~~~~~g~IV~isS~~g~~~~~~~-~~Y~asKaa~~~l~~~la~el~~-~gIrv~~v~PG~v~T~~~~~~~~-~~ 911 (958)
++|+|.+ +|+||++||.++..+.++. ..|++||+|+++|+++|+.|+++ +||+||+|+||+|+|+|...... +.
T Consensus 163 ~~~~m~~---~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~~~~~~~ 239 (297)
T 1d7o_A 163 FLPIMNP---GGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDT 239 (297)
T ss_dssp HGGGEEE---EEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCCSHHHH
T ss_pred HHHHhcc---CceEEEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccchhhhccccHH
Confidence 9999962 4899999999999998888 69999999999999999999985 89999999999999999764311 11
Q ss_pred hhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 912 VVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 912 ~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
..... ......+..+|+|+|+.++|+++ +...+++|..+
T Consensus 240 ~~~~~~~~~p~~r~~~pedvA~~v~~l~s-~~~~~itG~~i 279 (297)
T 1d7o_A 240 MIEYSYNNAPIQKTLTADEVGNAAAFLVS-PLASAITGATI 279 (297)
T ss_dssp HHHHHHHHSSSCCCBCHHHHHHHHHHHTS-GGGTTCCSCEE
T ss_pred HHHHhhccCCCCCCCCHHHHHHHHHHHhC-ccccCCCCCEE
Confidence 11111 11223457899999999999765 55567777554
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-31 Score=285.48 Aligned_cols=220 Identities=24% Similarity=0.322 Sum_probs=184.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcC--CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
|++|+++||||++|||+++|++|+++| ++|++++|+.++++++.+. .+.++.++.+|+++.++++++++++.+.+
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI---KDSRVHVLPLTVTCDKSLDTFVSKVGEIV 77 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC---CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhc---cCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999 9999999998887766432 24578899999999999999999999999
Q ss_pred C--CccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC------CC----CcEEEEecCccCcC
Q psy4557 792 G--HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS------RR----PGHILNISSNAGVR 858 (958)
Q Consensus 792 g--~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~------~~----~g~IV~isS~~g~~ 858 (958)
| ++|+||||||+.. ..++.+.+.++|++++++|+.|++.+++.++|.|.+. +. .|+||++||..+..
T Consensus 78 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 157 (250)
T 1yo6_A 78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI 157 (250)
T ss_dssp GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred CCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcccc
Confidence 8 9999999999987 6778888999999999999999999999999999743 21 58999999999987
Q ss_pred CC-------CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHH
Q psy4557 859 PF-------AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEIS 931 (958)
Q Consensus 859 ~~-------~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia 931 (958)
+. ++...|++||+|+++|+++++.|++++||+|++|+||+|+|+|... .+..+|+++|
T Consensus 158 ~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---------------~~~~~~~~~a 222 (250)
T 1yo6_A 158 TDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK---------------NAALTVEQST 222 (250)
T ss_dssp TTCCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC----------------------------HHHH
T ss_pred CCcccccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC---------------CCCCCHHHHH
Confidence 76 6788999999999999999999999999999999999999998532 1347899999
Q ss_pred HHHHHHhcCCCCccccceEec
Q psy4557 932 QSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 932 ~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+.+++++..+. ..++|..+.
T Consensus 223 ~~~~~~~~~~~-~~~~G~~~~ 242 (250)
T 1yo6_A 223 AELISSFNKLD-NSHNGRFFM 242 (250)
T ss_dssp HHHHHHHTTCC-GGGTTCEEE
T ss_pred HHHHHHHhccc-ccCCCeEEE
Confidence 99999887654 456666653
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-31 Score=291.60 Aligned_cols=235 Identities=21% Similarity=0.331 Sum_probs=199.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-ChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++|+++||||++|||+++|++|+++|++|++++| +.++++++.+++...+.++.++.+|++++++++++++++.+.+
T Consensus 18 ~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 18 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999999 7888888888887666778899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-CCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-RPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-~~~~~~~~Y~asK 870 (958)
|++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|. + +|+||++||.++. .+.++...|++||
T Consensus 98 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~--~~~iv~~sS~~~~~~~~~~~~~Y~~sK 174 (274)
T 1ja9_A 98 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCR-R--GGRIILTSSIAAVMTGIPNHALYAGSK 174 (274)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEE-E--EEEEEEECCGGGTCCSCCSCHHHHHHH
T ss_pred CCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--CCEEEEEcChHhccCCCCCCchHHHHH
Confidence 9999999999998777788899999999999999999999999999986 2 2899999999998 7888999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCC-----------CCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHH
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSH-----------STD-RDVVDKYD-ISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~-----------~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~ 937 (958)
++++.|+++++.|++..||+|++|+||++.|++... ... ......+. .....++..|+|+|++++++
T Consensus 175 ~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~l 254 (274)
T 1ja9_A 175 AAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSAL 254 (274)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 999999999999999999999999999999997541 111 11111111 11223567999999999998
Q ss_pred hcCCCCccccceEe
Q psy4557 938 LLQPSHSAVNSILI 951 (958)
Q Consensus 938 l~~~~~~~i~~~~i 951 (958)
+..+ ..+++|..+
T Consensus 255 ~~~~-~~~~~G~~~ 267 (274)
T 1ja9_A 255 CQEE-SEWINGQVI 267 (274)
T ss_dssp HSGG-GTTCCSCEE
T ss_pred hCcc-cccccCcEE
Confidence 7644 344555433
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.4e-32 Score=290.80 Aligned_cols=215 Identities=24% Similarity=0.348 Sum_probs=179.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCe-EEEEecChh--hHHHHHHHhhcCCCcEEEEEecCCCH-HHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAK-VVAVARRID--RLENLKTSLQNAPGSIIVKKLDVTIE-NDVKKVVREVL 788 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~-Vi~~~r~~~--~l~~~~~~l~~~~~~~~~~~~Dvs~~-~~v~~~~~~~~ 788 (958)
+++||+++||||++|||+++|++|+++|++ |++++|+.+ .++++.+... +.++.++.+|++++ ++++++++++.
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINP--KVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCT--TSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCC--CceEEEEEEecCCChHHHHHHHHHHH
Confidence 378999999999999999999999999996 999999863 3444443321 34688899999998 99999999999
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCcEEEEecCccCcCCCCCChhh
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR--RPGHILNISSNAGVRPFAGLAVY 866 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~--~~g~IV~isS~~g~~~~~~~~~Y 866 (958)
+.+|++|+||||||+. +.++|++++++|+.|++.+++.++|.|.+++ ..|+||++||.++..+.++...|
T Consensus 80 ~~~g~id~lv~~Ag~~--------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y 151 (254)
T 1sby_A 80 DQLKTVDILINGAGIL--------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVY 151 (254)
T ss_dssp HHHSCCCEEEECCCCC--------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHH
T ss_pred HhcCCCCEEEECCccC--------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCCCchHH
Confidence 9999999999999984 3467999999999999999999999996432 15899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh----hhhhhhccccCCCCCCHHHHHHHHHHHhc
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR----DVVDKYDISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~----~~~~~~~~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
++||+|+++|+++++.++.++||+||+|+||+|+|+|....... ..... .....+..+|+|+|+.+++++.
T Consensus 152 ~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dvA~~i~~~~~ 226 (254)
T 1sby_A 152 SASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAE--LLLSHPTQTSEQCGQNFVKAIE 226 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHH--HHTTSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHH--HHhcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988899999999999999986432110 00111 1122345689999999999875
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-32 Score=331.25 Aligned_cols=108 Identities=21% Similarity=0.259 Sum_probs=102.9
Q ss_pred ccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 11 ~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
...+++++|+++++++||++|+++ +++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+|+|++
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRD-RFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEc-CCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 456899999999999999999987 4678999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcc
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKG 119 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~ 119 (958)
||||||++|.+|+++++++++++++|+..
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~ 132 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDCRLILDCS 132 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTEEEEEECC
T ss_pred EEeeCccChHHHHHHHHHhCCCcEEEecC
Confidence 99999999999999999999999999654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-31 Score=282.58 Aligned_cols=230 Identities=25% Similarity=0.334 Sum_probs=190.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++. ...++.+|+++.++++++++ .+
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~----~~ 74 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDWDATEKALG----GI 74 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHT----TC
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc----CCCcEEecCCCHHHHHHHHH----Hc
Confidence 45789999999999999999999999999999999999888877665532 24456899999999887776 67
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|+||||||+....++.+.+.++|++++++|+.|++.+++.++|.|.+++..|+||++||.++..+.++...|++||+
T Consensus 75 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~ 154 (244)
T 1cyd_A 75 GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKG 154 (244)
T ss_dssp CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred CCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCCCcchhHHHHH
Confidence 89999999999987777888999999999999999999999999999975432689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-CChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-TDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
+++.|+++++.|++++||+|++|+||++.|++.... .......... .....++..|+|+|+++++++..+ ..+++|.
T Consensus 155 a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~ 233 (244)
T 1cyd_A 155 AMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDR-SASTSGG 233 (244)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSS
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhcCCccCCCCHHHHHHHHHHHhCch-hhcccCC
Confidence 999999999999999999999999999999975421 1121111111 112245789999999999987644 3445554
Q ss_pred E
Q psy4557 950 L 950 (958)
Q Consensus 950 ~ 950 (958)
.
T Consensus 234 ~ 234 (244)
T 1cyd_A 234 G 234 (244)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=288.99 Aligned_cols=221 Identities=22% Similarity=0.266 Sum_probs=190.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCC-cEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+. ++.++.+|+++.++++++++++.+.
T Consensus 24 ~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 24 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 103 (286)
T ss_dssp GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999888877765443 6888999999999999999999999
Q ss_pred cCCccEEEEc-cccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 791 LGHIDILVNN-AGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 791 ~g~iDilInn-AG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
+|++|+|||| ||+... .+.+.+.++|++++++|+.|++.++++++|.|.+. .|+||++||.++..+.++...|++|
T Consensus 104 ~g~iD~li~naag~~~~-~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~g~iv~isS~~~~~~~~~~~~Y~as 180 (286)
T 1xu9_A 104 MGGLDMLILNHITNTSL-NLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSSLAGKVAYPMVAAYSAS 180 (286)
T ss_dssp HTSCSEEEECCCCCCCC-CCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEGGGTSCCTTCHHHHHH
T ss_pred cCCCCEEEECCccCCCC-ccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC--CCEEEEECCcccccCCCCccHHHHH
Confidence 9999999999 576543 44567899999999999999999999999998643 4899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--CCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 870 KYFIEGISGALRQEV--SDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 870 Kaa~~~l~~~la~el--~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|+|+++|+++++.|+ ...||+|++|+||+|+|+|....... ....+..+|+++|+.++..+..+..
T Consensus 181 K~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~--------~~~~~~~~~~~vA~~i~~~~~~~~~ 248 (286)
T 1xu9_A 181 KFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSG--------IVHMQAAPKEECALEIIKGGALRQE 248 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSCG--------GGGGGCBCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHHHhccc--------cccCCCCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999 67899999999999999975321110 0112457899999999998876543
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-31 Score=284.44 Aligned_cols=225 Identities=19% Similarity=0.256 Sum_probs=192.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC---CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLG---AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~G---a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
..+++|+++||||++|||+++|++|+++| ++|++++|+.++++++. ++...+.++.++.+|+++.++++++++++.
T Consensus 17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~-~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 95 (267)
T 1sny_A 17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE-DLAKNHSNIHILEIDLRNFDAYDKLVADIE 95 (267)
T ss_dssp ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH-HHHHHCTTEEEEECCTTCGGGHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHH-HhhccCCceEEEEecCCChHHHHHHHHHHH
Confidence 56789999999999999999999999999 99999999987766543 333334578899999999999999999999
Q ss_pred HHcC--CccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC------CC----CcEEEEecCcc
Q psy4557 789 AELG--HIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS------RR----PGHILNISSNA 855 (958)
Q Consensus 789 ~~~g--~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~------~~----~g~IV~isS~~ 855 (958)
+.+| ++|+||||||+.. ..++.+.+.++|++++++|+.|++.+++.++|.|.+. +. .|+||++||.+
T Consensus 96 ~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~ 175 (267)
T 1sny_A 96 GVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL 175 (267)
T ss_dssp HHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred HhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEeccc
Confidence 9998 8999999999987 6678888999999999999999999999999999754 21 58999999999
Q ss_pred CcCCCC---CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHH
Q psy4557 856 GVRPFA---GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQ 932 (958)
Q Consensus 856 g~~~~~---~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~ 932 (958)
+..+.+ +...|++||+|+++|+++++.|++++||+|++|+||+|+|+|... ....+|+++|+
T Consensus 176 ~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---------------~~~~~~~~~a~ 240 (267)
T 1sny_A 176 GSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS---------------SAPLDVPTSTG 240 (267)
T ss_dssp GCSTTCCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT---------------TCSBCHHHHHH
T ss_pred ccccCCCCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC---------------CCCCCHHHHHH
Confidence 887653 778899999999999999999999999999999999999998632 13478999999
Q ss_pred HHHHHhcCCCCccccceEecC
Q psy4557 933 SIIFALLQPSHSAVNSILIEP 953 (958)
Q Consensus 933 ~i~~~l~~~~~~~i~~~~i~p 953 (958)
.+++++..+ ...+++..+.-
T Consensus 241 ~~~~~~~~~-~~~~~G~~~~~ 260 (267)
T 1sny_A 241 QIVQTISKL-GEKQNGGFVNY 260 (267)
T ss_dssp HHHHHHHHC-CGGGTTCEECT
T ss_pred HHHHHHHhc-CcCCCCcEEcc
Confidence 999988654 34567766653
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-32 Score=307.82 Aligned_cols=226 Identities=12% Similarity=0.020 Sum_probs=185.8
Q ss_pred CCCCEEEEEcCCchHHHH--HHHHHHHcCCeEEEEecChhh------------HHHHHHHhhcCCCcEEEEEecCCCHHH
Q psy4557 714 LANKVIFVTGSSSGIGEQ--LVKDLVTLGAKVVAVARRIDR------------LENLKTSLQNAPGSIIVKKLDVTIEND 779 (958)
Q Consensus 714 l~~k~~lITGas~GIG~a--ia~~la~~Ga~Vi~~~r~~~~------------l~~~~~~l~~~~~~~~~~~~Dvs~~~~ 779 (958)
..||++||||||+|||++ +|+.|+++|++|++++|+.+. .+.+.+.+...+.++..+++|+++.++
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~ 137 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET 137 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence 478999999999999999 999999999999999997543 345555556667788899999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEccccC-------------CCccc---------------------cCCCHHHHHHHHHHHh
Q psy4557 780 VKKVVREVLAELGHIDILVNNAGVM-------------YFTLM---------------------EKYKLEEWNAMINVNI 825 (958)
Q Consensus 780 v~~~~~~~~~~~g~iDilInnAG~~-------------~~~~~---------------------~~~~~~~~~~~~~vN~ 825 (958)
++++++++.+.+|+||+||||||+. ...++ .+.+.++|++++++|.
T Consensus 138 v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~ 217 (418)
T 4eue_A 138 KDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMG 217 (418)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhh
Confidence 9999999999999999999999984 22233 4579999999999999
Q ss_pred HHHH-HHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC--hhhhHHHHHHHHHHHHHHHHhCC-CCcEEEEEECCcccC
Q psy4557 826 KGVL-HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL--AVYTGTKYFIEGISGALRQEVSD-RNIKVTCIQAGDVKT 901 (958)
Q Consensus 826 ~g~~-~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~--~~Y~asKaa~~~l~~~la~el~~-~gIrv~~v~PG~v~T 901 (958)
.+.+ .+++.+++.+... ++|+||++||+++..+.|.+ ++|++||+|+.+|+|+|+.|+++ +|||||+|+||+|.|
T Consensus 218 ~~~~~~~~~~l~~~~~~~-~gg~IV~iSSi~~~~~~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN~V~PG~v~T 296 (418)
T 4eue_A 218 GEDWQEWCEELLYEDCFS-DKATTIAYSYIGSPRTYKIYREGTIGIAKKDLEDKAKLINEKLNRVIGGRAFVSVNKALVT 296 (418)
T ss_dssp SHHHHHHHHHHHHTTCEE-EEEEEEEEECCCCGGGTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHhhhc-CCcEEEEEeCchhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEECCcCcC
Confidence 9998 7777777654423 35899999999999999988 99999999999999999999999 999999999999999
Q ss_pred CCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcC
Q psy4557 902 ELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
++...................+..+||++++.+.+++++
T Consensus 297 ~~s~~ip~~p~y~~~~~~~mk~~G~~E~v~e~~~~L~sd 335 (418)
T 4eue_A 297 KASAYIPTFPLYAAILYKVMKEKNIHENCIMQIERMFSE 335 (418)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred hhhhcCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHhhc
Confidence 987654322111111111122457899999999998765
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=286.79 Aligned_cols=220 Identities=23% Similarity=0.323 Sum_probs=191.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHH-cCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVT-LGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~-~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.++|+++||||++|||+++|++|++ +|++|++++|+.++++++.+++...+.++.++.+|+++.++++++++++.+.+|
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 81 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999 999999999999988888888876666788899999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCC-HHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC------------
Q psy4557 793 HIDILVNNAGVMYFTLMEKYK-LEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP------------ 859 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~-~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~------------ 859 (958)
++|+||||||+..... .+.+ .++|++++++|+.|++.+++.++|.|.+ .|+||++||.++..+
T Consensus 82 ~id~li~~Ag~~~~~~-~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~g~iv~~sS~~~~~~~~~~~~~~~~~~ 157 (276)
T 1wma_A 82 GLDVLVNNAGIAFKVA-DPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP---QGRVVNVSSIMSVRALKSCSPELQQKF 157 (276)
T ss_dssp SEEEEEECCCCCCCTT-CCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEECCHHHHHHHHTSCHHHHHHH
T ss_pred CCCEEEECCcccccCC-CccccHHHHHhhhheeeeeHHHHHHHHHHhhCC---CCEEEEECChhhhcccccCChhHHhhc
Confidence 9999999999875443 2334 5899999999999999999999998852 489999999877632
Q ss_pred ------------------------------CCCChhhhHHHHHHHHHHHHHHHHhCC----CCcEEEEEECCcccCCCCC
Q psy4557 860 ------------------------------FAGLAVYTGTKYFIEGISGALRQEVSD----RNIKVTCIQAGDVKTELLS 905 (958)
Q Consensus 860 ------------------------------~~~~~~Y~asKaa~~~l~~~la~el~~----~gIrv~~v~PG~v~T~~~~ 905 (958)
.|. ..|++||+|++.|+++++.++++ .||+|++|+||+|.|+|..
T Consensus 158 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~ 236 (276)
T 1wma_A 158 RSETITEEELVGLMNKFVEDTKKGVHQKEGWPS-SAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG 236 (276)
T ss_dssp HCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCS-CHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTC
T ss_pred cccccchhhhhhhhhhhhhhhcccccccCCCcc-chhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCC
Confidence 123 78999999999999999999987 7999999999999999864
Q ss_pred CCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC-CccccceEecC
Q psy4557 906 HSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS-HSAVNSILIEP 953 (958)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~-~~~i~~~~i~p 953 (958)
. .+..+|+++|..++++++++. ..+++|..+..
T Consensus 237 ~---------------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~~~ 270 (276)
T 1wma_A 237 P---------------KATKSPEEGAETPVYLALLPPDAEGPHGQFVSE 270 (276)
T ss_dssp T---------------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEEET
T ss_pred c---------------cccCChhHhhhhHhhhhcCcccccccCceEecc
Confidence 2 135789999999999988774 46788888763
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-31 Score=343.09 Aligned_cols=109 Identities=28% Similarity=0.515 Sum_probs=104.1
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.+++++|+++++++||++|+++ +++++||+||+++++++|++|++.|+++|++|+|+++||+++++++|||+|+|++||
T Consensus 464 ~~l~~~~~~~~~~~p~~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~v 542 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPDAPALTY-SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYL 542 (1304)
T ss_dssp CCHHHHHHHHHHHCTTSEEEES-SSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEE-CCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEE
Confidence 5799999999999999999986 567899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccch
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
||||.+|.+|+++|+++++++++|++.+..
T Consensus 543 pldp~~p~~rl~~il~~~~~~~vl~~~~~~ 572 (1304)
T 2vsq_A 543 PVDPKLPEDRISYMLADSAAACLLTHQEMK 572 (1304)
T ss_dssp ECCTTSCHHHHHHHHHHHTCCEEEECSTTC
T ss_pred EECCCCHHHHHHHHHHHcCCCEEEECcchh
Confidence 999999999999999999999999986543
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=278.37 Aligned_cols=220 Identities=22% Similarity=0.259 Sum_probs=181.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
++|+++||||++|||+++|++|+++|++|++++|+.+ . .++.++++|++++++++++++++ +.++++
T Consensus 1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~-----------~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~ 67 (242)
T 1uay_A 1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G-----------EDLIYVEGDVTREEDVRRAVARA-QEEAPL 67 (242)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-----------SSSEEEECCTTCHHHHHHHHHHH-HHHSCE
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c-----------cceEEEeCCCCCHHHHHHHHHHH-HhhCCc
Confidence 3789999999999999999999999999999999865 1 12467899999999999999999 889999
Q ss_pred cEEEEccccCCCccccCC----CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-----CCcEEEEecCccCcCCCCCChh
Q psy4557 795 DILVNNAGVMYFTLMEKY----KLEEWNAMINVNIKGVLHCIGNILPSMLHSR-----RPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~----~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~-----~~g~IV~isS~~g~~~~~~~~~ 865 (958)
|++|||||......+.+. +.++|++++++|+.|++.+++.++|.|.+.+ ..|+||++||.++..+.++...
T Consensus 68 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~ 147 (242)
T 1uay_A 68 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAA 147 (242)
T ss_dssp EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTCHH
T ss_pred eEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCCch
Confidence 999999998766555544 4559999999999999999999999997432 1259999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccC-CCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKA-VPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~-~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|++||+++++|+++++.|++++||+|++|+||+|.|++..... ........ .... .++.+|+|+|+.+++++++
T Consensus 148 Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~--- 223 (242)
T 1uay_A 148 YAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLP-EKAKASLAAQVPFPPRLGRPEEYAALVLHILEN--- 223 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSC-HHHHHHHHTTCCSSCSCCCHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhccc-hhHHHHHHhhCCCcccCCCHHHHHHHHHHHhcC---
Confidence 9999999999999999999999999999999999999865432 11111111 1112 4568999999999998876
Q ss_pred ccccceEe
Q psy4557 944 SAVNSILI 951 (958)
Q Consensus 944 ~~i~~~~i 951 (958)
.+++|..+
T Consensus 224 ~~~~G~~~ 231 (242)
T 1uay_A 224 PMLNGEVV 231 (242)
T ss_dssp TTCCSCEE
T ss_pred CCCCCcEE
Confidence 34455433
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-29 Score=274.75 Aligned_cols=293 Identities=18% Similarity=0.147 Sum_probs=212.8
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++|+++|++++ .+|+|++|..... . + .++.++.+|++ +
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~---~-~-----------------~~~~~~~~Dl~-~------ 53 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDG-NTPIILTRSIGNK---A-I-----------------NDYEYRVSDYT-L------ 53 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCC--------------------------CCEEEECCCC-H------
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCCcc---c-C-----------------CceEEEEcccc-H------
Confidence 579999999999999999999874 6899999973211 0 1 26788899975 3
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCcccccccCcC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQEDYTVADFD 478 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~~~~~~~~ 478 (958)
+.+..+.+++|+|||+||..+.. .+.....+|+.||.+++++|.+.++++|+|+||.+||+... .++.|+
T Consensus 54 -~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~------- 124 (311)
T 3m2p_A 54 -EDLINQLNDVDAVVHLAATRGSQ-GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEK------- 124 (311)
T ss_dssp -HHHHHHTTTCSEEEECCCCCCSS-SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTT-------
T ss_pred -HHHHHhhcCCCEEEEccccCCCC-ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-------
Confidence 56777888999999999988766 66677889999999999999998889999999999998543 223332
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhh-CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc---CCCCCcCCcc
Q psy4557 479 DFMTTTSGYGQSKIVSEYLVLNAGQ-MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA---PDIDWYLEFT 554 (958)
Q Consensus 479 ~~~~~~~gY~~SK~~aE~lv~~a~~-~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~---P~~~~~~~~~ 554 (958)
.+..+.+.|+.||+.+|+++..+.+ .|++++|+||+++||+...+. .++..+++.+..-... .+.+..++|+
T Consensus 125 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~v 200 (311)
T 3m2p_A 125 ELPLPDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNN----YMINRFFRQAFHGEQLTLHANSVAKREFL 200 (311)
T ss_dssp SCCCCSSHHHHHHHHHHHHHHHHHHHSCCEEEEEEECEEECSCC--C----CHHHHHHHHHHTCCCEEESSBCCCCEEEE
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCCC----CHHHHHHHHHHcCCCeEEecCCCeEEceE
Confidence 2335678999999999999987654 799999999999999876533 3445555554432222 2234568999
Q ss_pred cHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHHHHhhccccc
Q psy4557 555 PVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQILRNKGKEY 633 (958)
Q Consensus 555 pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~~~~~~ 633 (958)
+||++|++++.++.++. .+.+||+.++.++++.|+++.+.+. |.+........| .. .
T Consensus 201 ~v~Dva~a~~~~~~~~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------~~---------------~ 258 (311)
T 3m2p_A 201 YAKDAAKSVIYALKQEK-VSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPN------AN---------------E 258 (311)
T ss_dssp EHHHHHHHHHHHTTCTT-CCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSS------BC---------------C
T ss_pred EHHHHHHHHHHHHhcCC-CCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCC------CC---------------C
Confidence 99999999999987665 6889999999999999999998764 654433221111 00 0
Q ss_pred cccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q psy4557 634 LTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPN 679 (958)
Q Consensus 634 ~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~~ 679 (958)
......+|+++.++. +|.+...--++.|+.+++++.+.|-.+-
T Consensus 259 ~~~~~~~d~~k~~~~---lG~~p~~~~~~~l~~~~~~~~~~~~~~~ 301 (311)
T 3m2p_A 259 GIHSSYMDSSKAKEL---LDFSTDYNFATAVEEIHLLMRGLDDVPL 301 (311)
T ss_dssp SCCCBCBCCHHHHHH---SCCCCSCCHHHHHHHHHHHHCC------
T ss_pred CcCceecCHHHHHHH---hCCCcccCHHHHHHHHHHHHHhcccCcc
Confidence 012345677776654 4766552235689999999988777664
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-30 Score=278.63 Aligned_cols=211 Identities=19% Similarity=0.217 Sum_probs=160.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||++|||+++|++|+++|++|++++|+.++++. .+.+|+++.++++++++++ ++++|+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-------------~~~~Dl~~~~~v~~~~~~~---~~~id~ 65 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-------------DLSTAEGRKQAIADVLAKC---SKGMDG 65 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------------CTTSHHHHHHHHHHHHTTC---TTCCSE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-------------ccccCCCCHHHHHHHHHHh---CCCCCE
Confidence 689999999999999999999999999999999764321 1568999999888777632 389999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-------------------
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV------------------- 857 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~------------------- 857 (958)
||||||+.... +.|++++++|+.|++.+++.++|.|.+ ++.|+||++||.++.
T Consensus 66 lv~~Ag~~~~~-------~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~ 137 (257)
T 1fjh_A 66 LVLCAGLGPQT-------KVLGNVVSVNYFGATELMDAFLPALKK-GHQPAAVVISSVASAHLAFDKNPLALALEAGEEA 137 (257)
T ss_dssp EEECCCCCTTC-------SSHHHHHHHHTHHHHHHHHHHHHHHHT-SSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHH
T ss_pred EEECCCCCCCc-------ccHHHHHHHhhHHHHHHHHHHHHHHhh-cCCcEEEEECChhhhccccccchhhhhhcccchh
Confidence 99999986411 228999999999999999999999974 446899999999988
Q ss_pred ---------CCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-c--cccCCCCC
Q psy4557 858 ---------RPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-D--ISKAVPVL 925 (958)
Q Consensus 858 ---------~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~--~~~~~~~~ 925 (958)
.+.++...|++||+|+++|+++++.|++++||+||+|+||+|.|+|............. . .....+..
T Consensus 138 ~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (257)
T 1fjh_A 138 KARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGRRA 217 (257)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------CCCSTTSCC
T ss_pred hhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccchhHHHHHHhcccccCCCC
Confidence 34456788999999999999999999999999999999999999987543111111111 0 11223578
Q ss_pred CHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 926 TTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 926 ~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+|+|+|+.++|+++. ...+++|..+.
T Consensus 218 ~~~dvA~~~~~l~~~-~~~~~tG~~~~ 243 (257)
T 1fjh_A 218 EPSEMASVIAFLMSP-AASYVHGAQIV 243 (257)
T ss_dssp CTHHHHHHHHHHTSG-GGTTCCSCEEE
T ss_pred CHHHHHHHHHHHhCc-hhcCCcCCEEE
Confidence 999999999997764 44567776553
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=276.96 Aligned_cols=313 Identities=15% Similarity=0.128 Sum_probs=220.7
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChh-hHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNK-TLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~-~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
..++|||||||||||++|+++|++++ .+|++++|..... .....+... .. .....++.++.+|++
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~Dl~----- 89 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKTL---VS-----TEQWSRFCFIEGDIR----- 89 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHT---SC-----HHHHTTEEEEECCTT-----
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhhhhhhc---cc-----cccCCceEEEEccCC-----
Confidence 45789999999999999999999864 7899999976532 222222110 00 011268999999987
Q ss_pred CCcHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcccc
Q psy4557 397 LKNQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDY 472 (958)
Q Consensus 397 L~~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~ 472 (958)
+.+.+..+..++|+|||+||..+.. .....+..+|+.||.+|+++|.+.++++|+|+||.+||+.... ++.|+
T Consensus 90 --d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~- 166 (351)
T 3ruf_A 90 --DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEE- 166 (351)
T ss_dssp --CHHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-
T ss_pred --CHHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccC-
Confidence 3467888888999999999976543 2345677899999999999999988899999999999986532 23332
Q ss_pred cccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---CCC
Q psy4557 473 TVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---DID 548 (958)
Q Consensus 473 ~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~~~ 548 (958)
.+..+.+.|+.||+.+|+++..+. +.|++++|+||++|||+...+......++..+++.+..-+.++ +.+
T Consensus 167 ------~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 240 (351)
T 3ruf_A 167 ------NIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGE 240 (351)
T ss_dssp ------CCCCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSC
T ss_pred ------CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCC
Confidence 223567899999999999998754 4599999999999999987654443455666666665544322 234
Q ss_pred CcCCcccHHHHHHHHHHHhcC-cCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHHHH
Q psy4557 549 WYLEFTPVDFLTKSLVQLTTN-VNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 549 ~~~~~~pVD~va~aiv~l~~~-~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~~~ 626 (958)
..++|++||++|++++.++.. ....+.+||+.++.++++.|+++.+.+. |.+....+. ......
T Consensus 241 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~-----~~~~~~--------- 306 (351)
T 3ruf_A 241 TSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKL-----SIKYRE--------- 306 (351)
T ss_dssp CEECCEEHHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC----------EEEC---------
T ss_pred eEEeeEEHHHHHHHHHHHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccc-----cccccC---------
Confidence 668999999999999998876 3456889999999999999999988764 432111100 000000
Q ss_pred hhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 627 RNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
..........+|+++.++.| |.....--++-|+.+++|+.+
T Consensus 307 ---~~~~~~~~~~~d~~k~~~~l---G~~p~~~~~~~l~~~~~~~~~ 347 (351)
T 3ruf_A 307 ---FRSGDVRHSQADVTKAIDLL---KYRPNIKIREGLRLSMPWYVR 347 (351)
T ss_dssp ---CCTTCCSBCCBCCHHHHHHH---CCCCCCCHHHHHHHHHHHHHH
T ss_pred ---CCCCccceeeeCHHHHHHHh---CCCCCCCHHHHHHHHHHHHHH
Confidence 00000123457888887665 555442235678888888764
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=302.47 Aligned_cols=109 Identities=23% Similarity=0.292 Sum_probs=101.9
Q ss_pred CccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCC
Q psy4557 10 DAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (958)
Q Consensus 10 ~~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~ 89 (958)
+...+++++|+++++ ||++|+++ +++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+|+|+
T Consensus 24 ~~~~~l~~~~~~~a~--pd~~Av~~-~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~ 100 (617)
T 3rg2_A 24 WQDLPLTDILTRHAA--SDSIAVID-GERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV 100 (617)
T ss_dssp CCCCCTTHHHHTTTT--CCSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred CCcCCHHHHHHHhhC--CCCeEEec-CCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCe
Confidence 345678999998887 99999987 467899999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 90 v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+|||+||.+|.+|+.++++++++++++++...
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~ 132 (617)
T 3rg2_A 101 APVLALFSHQRSELNAYASQIEPALLIADRQH 132 (617)
T ss_dssp EEEEECTTCCHHHHHHHHHHHCCSEEEEETTS
T ss_pred EEccCCccccHHHHHHHHhhcCceEEEecccc
Confidence 99999999999999999999999999997653
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-30 Score=316.04 Aligned_cols=232 Identities=20% Similarity=0.292 Sum_probs=191.0
Q ss_pred CCCCCEEEEEcCCch-HHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhc----CCCcEEEEEecCCCHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSG-IGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQN----APGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 713 ~l~~k~~lITGas~G-IG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~----~~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
+++||++|||||++| ||+++|+.|+++|++|+++ +|+.++++++.+++.. .+.++.++.+|+++.+++++++++
T Consensus 473 sL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~ 552 (1688)
T 2pff_A 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 552 (1688)
T ss_dssp CCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHH
T ss_pred ccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 468999999999998 9999999999999999998 6777777766666632 245788999999999999999999
Q ss_pred HHHH-----cC-CccEEEEccccCCCc-cccCCC--HHHHHHHHHHHhHHHHHHHHHH--HHHHHhCCCCcEEEEecCcc
Q psy4557 787 VLAE-----LG-HIDILVNNAGVMYFT-LMEKYK--LEEWNAMINVNIKGVLHCIGNI--LPSMLHSRRPGHILNISSNA 855 (958)
Q Consensus 787 ~~~~-----~g-~iDilInnAG~~~~~-~~~~~~--~~~~~~~~~vN~~g~~~~~~~~--l~~m~~~~~~g~IV~isS~~ 855 (958)
+.+. +| +||+||||||+.... ++.+.+ .++|+++|++|+.|++.+++.+ +|.|. .++.|+||++||.+
T Consensus 553 I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~-krggGrIVnISSiA 631 (1688)
T 2pff_A 553 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIE-TRPAQVILPMSPNH 631 (1688)
T ss_dssp HHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCT-TSCEEECCCCCSCT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHH-hCCCCEEEEEEChH
Confidence 9988 78 999999999998766 788888 8999999999999999999998 78886 34458999999999
Q ss_pred CcCCCCCChhhhHHHHHHHHH-HHHHHHHhCCCCcEEEEEECCccc-CCCCCCCCChhhhhhhccccCCCCCCHHHHHHH
Q psy4557 856 GVRPFAGLAVYTGTKYFIEGI-SGALRQEVSDRNIKVTCIQAGDVK-TELLSHSTDRDVVDKYDISKAVPVLTTKEISQS 933 (958)
Q Consensus 856 g~~~~~~~~~Y~asKaa~~~l-~~~la~el~~~gIrv~~v~PG~v~-T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~ 933 (958)
+..+ +.+.|++||+|+.+| ++.++.++++. |+||+|+||+|+ |+|..... ...........+..+|+|+|..
T Consensus 632 G~~G--g~saYaASKAAL~aLttrsLAeEla~~-IRVNaVaPG~V~TT~M~~~~e---~~~~~l~~iplR~~sPEEVA~a 705 (1688)
T 2pff_A 632 GTFG--GDGMYSESKLSLETLFNRWHSESWANQ-LTVCGAIIGWTRGTGLMSANN---IIAEGIEKMGVRTFSQKEMAFN 705 (1688)
T ss_dssp TTSS--CBTTHHHHHHHHTHHHHHTTTSSCTTT-EECCCCCCCCCCCCSSSCTTT---TCSTTTSSSSCCCCCCCTTHHH
T ss_pred hccC--CchHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEEEECcCcCCcccCCch---HHHHHHHhCCCCCCCHHHHHHH
Confidence 9876 678999999999999 88899999887 999999999999 78864311 0011111122356799999999
Q ss_pred HHHHhcCCCCccccceEe
Q psy4557 934 IIFALLQPSHSAVNSILI 951 (958)
Q Consensus 934 i~~~l~~~~~~~i~~~~i 951 (958)
++|+++.....+++|..|
T Consensus 706 IlFLaSd~sAs~ITGq~I 723 (1688)
T 2pff_A 706 LLGLLTPEVVELCQKSPV 723 (1688)
T ss_dssp HHHHTSTTHHHHHTTSCC
T ss_pred HHHHhCCCccccccCcEE
Confidence 999776553455665443
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-29 Score=281.33 Aligned_cols=321 Identities=21% Similarity=0.181 Sum_probs=218.5
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++|||||||||||++|+++|+++++.+|++++|....... + ....+++++.+|++.
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~---~--------------~~~~~v~~~~~Dl~~----- 80 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGD---L--------------VKHERMHFFEGDITI----- 80 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGG---G--------------GGSTTEEEEECCTTT-----
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhh---h--------------ccCCCeEEEeCccCC-----
Confidence 457899999999999999999998766899999997543210 0 012589999999872
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~ 473 (958)
+.+.+..+.+++|+|||+||..+.. .....++++||.||.+|+++|.+.+ ++|+|+||.+|||.... ++.|+..
T Consensus 81 -d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~ 158 (372)
T 3slg_A 81 -NKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCADEQFDPDAS 158 (372)
T ss_dssp -CHHHHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCCSSBCTTTC
T ss_pred -CHHHHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCCCCCCcccc
Confidence 3456777778999999999987643 2445677899999999999998888 99999999999986432 3444332
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcC----hhHHHHHHHHHHHHhCCcC---C
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWN----LVDLNLYILKAITRLGYAP---D 546 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n----~~d~~~~l~~~~~~~g~~P---~ 546 (958)
.........+.+.|+.||+.+|+++..+.+.|++++|+||++|||+...+.++ ...++..+++....-..++ +
T Consensus 159 ~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (372)
T 3slg_A 159 ALTYGPINKPRWIYACSKQLMDRVIWGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDG 238 (372)
T ss_dssp CEEECCTTCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGG
T ss_pred ccccCCCCCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCC
Confidence 21111111355689999999999998866559999999999999998765322 2345556666555433222 2
Q ss_pred CCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC-CCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchh
Q psy4557 547 IDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT-NPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPL 622 (958)
Q Consensus 547 ~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~-~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~ 622 (958)
.+..++|++||++|++++.++.... ..+++||+.+| .++++.|+++.+.+. |.+.+..+...+.. . .. ...
T Consensus 239 g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-~--~~--~~~ 313 (372)
T 3slg_A 239 GSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVK-L--VE--TTS 313 (372)
T ss_dssp GCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCC-E--EE--C--
T ss_pred CceEEEEEEHHHHHHHHHHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccce-e--ee--ccc
Confidence 3456899999999999999987764 56899999996 799999999998754 54433222221110 0 00 000
Q ss_pred HHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHH
Q psy4557 623 IQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLR 672 (958)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~ 672 (958)
..+...... ......+|+++.++.| |.+...--++-|+.+++|+.
T Consensus 314 ~~~~~~~~~--~~~~~~~d~~k~~~~l---G~~p~~~l~e~l~~~~~~~~ 358 (372)
T 3slg_A 314 GAYYGNGYQ--DVQNRVPKIENTMQEL---GWAPQFTFDDALRQIFEAYR 358 (372)
T ss_dssp -------------CCCCBCCHHHHHHH---TCCCCCCHHHHHHHHHHHHT
T ss_pred cccccCCcc--ccceeecCHHHHHHHc---CCCCCCCHHHHHHHHHHHHH
Confidence 011110000 0123456788776655 55544223567888888875
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=256.02 Aligned_cols=206 Identities=17% Similarity=0.230 Sum_probs=175.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||++|||+++|++|+++ +|++++|+.++++++.+++.. .++.+|+++++++++++++ +|++|+
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~D~~~~~~~~~~~~~----~~~id~ 69 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGA-----RALPADLADELEAKALLEE----AGPLDL 69 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTC-----EECCCCTTSHHHHHHHHHH----HCSEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccC-----cEEEeeCCCHHHHHHHHHh----cCCCCE
Confidence 68999999999999999999999 999999999888888776642 6788999999999998876 789999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHH
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l 876 (958)
||||||.....++.+.+.++|++++++|+.|++.+++.+ . .++.|+||++||..+..+.++...|++||+++++|
T Consensus 70 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~-~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~ 144 (207)
T 2yut_A 70 LVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHA----R-FQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAY 144 (207)
T ss_dssp EEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHC----C-EEEEEEEEEECCCHHHHSSTTBHHHHHHHHHHHHH
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH----H-hcCCcEEEEEcChhhccCCCCcchHHHHHHHHHHH
Confidence 999999987777888899999999999999999999987 2 23458999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 877 ~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+++++.|++++||+|++|+||++.|++.... .....+.+.|+|+|+.+++++.++....+.+
T Consensus 145 ~~~~~~~~~~~gi~v~~v~pg~v~t~~~~~~----------~~~~~~~~~~~dva~~~~~~~~~~~~~~~~~ 206 (207)
T 2yut_A 145 LEAARKELLREGVHLVLVRLPAVATGLWAPL----------GGPPKGALSPEEAARKVLEGLFREPVPALLE 206 (207)
T ss_dssp HHHHHHHHHTTTCEEEEECCCCBCSGGGGGG----------TSCCTTCBCHHHHHHHHHHHHC--CCCSCCC
T ss_pred HHHHHHHHhhhCCEEEEEecCcccCCCcccc----------CCCCCCCCCHHHHHHHHHHHHhCCCCccccc
Confidence 9999999999999999999999999973211 0112457899999999999998877665543
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=320.52 Aligned_cols=232 Identities=20% Similarity=0.293 Sum_probs=188.1
Q ss_pred CCCCCEEEEEcCCch-HHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHh----hcCCCcEEEEEecCCCHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSG-IGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSL----QNAPGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 713 ~l~~k~~lITGas~G-IG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l----~~~~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
+++||++|||||++| ||+++|+.|+++|++|+++ +|+.++++++.+++ ...+.++.++.||+++.+++++++++
T Consensus 672 ~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~ 751 (1887)
T 2uv8_A 672 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 751 (1887)
T ss_dssp CCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHH
Confidence 478999999999998 9999999999999999998 57777776665555 23356788999999999999999999
Q ss_pred HHHH-----cC-CccEEEEccccCCCc-cccCCC--HHHHHHHHHHHhHHHHHHHHHH--HHHHHhCCCCcEEEEecCcc
Q psy4557 787 VLAE-----LG-HIDILVNNAGVMYFT-LMEKYK--LEEWNAMINVNIKGVLHCIGNI--LPSMLHSRRPGHILNISSNA 855 (958)
Q Consensus 787 ~~~~-----~g-~iDilInnAG~~~~~-~~~~~~--~~~~~~~~~vN~~g~~~~~~~~--l~~m~~~~~~g~IV~isS~~ 855 (958)
+.+. +| +||+||||||+.... ++.+.+ .++|+++|++|+.|++.+++.+ +|.|. .++.|+|||+||.+
T Consensus 752 i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~-~~~~G~IVnISS~a 830 (1887)
T 2uv8_A 752 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIE-TRPAQVILPMSPNH 830 (1887)
T ss_dssp HHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCC-SCCEEEEEEECSCT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hCCCCEEEEEcChH
Confidence 9988 67 999999999998776 788888 8999999999999999999988 68886 34458999999999
Q ss_pred CcCCCCCChhhhHHHHHHHHH-HHHHHHHhCCCCcEEEEEECCccc-CCCCCCCCChhhhhhhccccCCCCCCHHHHHHH
Q psy4557 856 GVRPFAGLAVYTGTKYFIEGI-SGALRQEVSDRNIKVTCIQAGDVK-TELLSHSTDRDVVDKYDISKAVPVLTTKEISQS 933 (958)
Q Consensus 856 g~~~~~~~~~Y~asKaa~~~l-~~~la~el~~~gIrv~~v~PG~v~-T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~ 933 (958)
+..+ +...|++||+|+.+| ++.++.+++++ |+||+|+||+|+ |+|........ .... ....+..+|+|+|..
T Consensus 831 g~~g--g~~aYaASKAAL~~Lttr~lA~ela~~-IrVNaV~PG~V~tT~m~~~~~~~~--~~~~-~~plr~~sPEEVA~a 904 (1887)
T 2uv8_A 831 GTFG--GDGMYSESKLSLETLFNRWHSESWANQ-LTVCGAIIGWTRGTGLMSANNIIA--EGIE-KMGVRTFSQKEMAFN 904 (1887)
T ss_dssp TCSS--CBTTHHHHHHHGGGHHHHHHHSSCTTT-EEEEEEEECCEECC-----CCTTH--HHHH-TTSCCCEEHHHHHHH
T ss_pred hccC--CCchHHHHHHHHHHHHHHHHHHHhCCC-eEEEEEEecccccccccccchhHH--HHHH-hcCCCCCCHHHHHHH
Confidence 9877 778999999999999 99999999988 999999999999 89865321111 1111 122356799999999
Q ss_pred HHHHhcCCCCccccceEe
Q psy4557 934 IIFALLQPSHSAVNSILI 951 (958)
Q Consensus 934 i~~~l~~~~~~~i~~~~i 951 (958)
++|+++.....+++|..|
T Consensus 905 vlfLaSd~~as~iTGq~I 922 (1887)
T 2uv8_A 905 LLGLLTPEVVELCQKSPV 922 (1887)
T ss_dssp HHGGGSHHHHHHHHHSCE
T ss_pred HHHHhCCCccccccCcEE
Confidence 999776442455555443
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=274.21 Aligned_cols=308 Identities=18% Similarity=0.185 Sum_probs=217.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcC-CCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVD-TKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~-~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.+++|||||||||||++|+++|+++ .+.+|+++.|.........+..+. . .........++.++.+|++.
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~Dl~d---- 79 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSS---L--GHFKNLIGFKGEVIAADINN---- 79 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCC---C--CCGGGGTTCCSEEEECCTTC----
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhh---h--hhhhhccccCceEEECCCCC----
Confidence 4578999999999999999999984 468999999976532111111000 0 00001123467889999873
Q ss_pred CCcHHHHHHH-hcccCEEEEcccccCc-ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccc
Q psy4557 397 LKNQDEYVSL-SYEIDMIIHAAAFVNL-ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTV 474 (958)
Q Consensus 397 L~~~~~~~~l-~~~vd~IiH~AA~v~~-~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~ 474 (958)
.+.+..+ ..++|+||||||.++. ...+..++++||.||.+++++|...+.+ |+|+||.+|||....+..|+.
T Consensus 80 ---~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~~~~E~~-- 153 (362)
T 3sxp_A 80 ---PLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKAPNVVGK-- 153 (362)
T ss_dssp ---HHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCSSBCTTS--
T ss_pred ---HHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCCCCCCCC--
Confidence 4677777 7899999999998765 3556788899999999999999988876 999999999987654444432
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---CCCCcC
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---DIDWYL 551 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~~~~~~ 551 (958)
+..+.+.|+.||+.+|++++.+... ++++++||++|||+..........++..+++.+..-...+ +.....
T Consensus 154 -----~~~p~~~Y~~sK~~~E~~~~~~~~~-~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (362)
T 3sxp_A 154 -----NESPENVYGFSKLCMDEFVLSHSND-NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLR 227 (362)
T ss_dssp -----CCCCSSHHHHHHHHHHHHHHHTTTT-SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEE
T ss_pred -----CCCCCChhHHHHHHHHHHHHHHhcc-CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEE
Confidence 2356688999999999999987665 9999999999999986544333345666666655433222 223568
Q ss_pred CcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHHHHhhcc
Q psy4557 552 EFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQILRNKG 630 (958)
Q Consensus 552 ~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~~~ 630 (958)
+|++||++|++++.++.... .+ +||+.++.++++.|+++.+.+. | +.+......+.
T Consensus 228 ~~i~v~Dva~ai~~~~~~~~-~g-~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~-------------------- 284 (362)
T 3sxp_A 228 DFVYIEDVIQANVKAMKAQK-SG-VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPY-------------------- 284 (362)
T ss_dssp ECEEHHHHHHHHHHHTTCSS-CE-EEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-----------------------
T ss_pred ccEEHHHHHHHHHHHHhcCC-CC-EEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCC--------------------
Confidence 99999999999999987654 45 9999999999999999999764 6 43332211110
Q ss_pred ccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 631 KEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 631 ~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
........+|+++.++.| |++...--++.|+.+++++.+
T Consensus 285 -~~~~~~~~~d~~k~~~~l---G~~p~~~l~e~l~~~~~~~~~ 323 (362)
T 3sxp_A 285 -AFFQKHTQAHIEPTILDL---DYTPLYDLESGIKDYLPHIHA 323 (362)
T ss_dssp -----CCCCBCCHHHHHHH---CCCCCCCHHHHHHHHHHHHTC
T ss_pred -cCcccceecCHHHHHHHh---CCCCCCCHHHHHHHHHHHHHH
Confidence 000123457888877665 555442235678889998763
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=267.51 Aligned_cols=302 Identities=19% Similarity=0.193 Sum_probs=213.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCC-CCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDT-KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~-~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
..++|||||||||||++|+++|++++ ..+|+++.|....... .++.. .....++.++.+|++.
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~-~~l~~-----------~~~~~~~~~~~~Dl~d---- 86 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNL-NNVKS-----------IQDHPNYYFVKGEIQN---- 86 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCG-GGGTT-----------TTTCTTEEEEECCTTC----
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccch-hhhhh-----------hccCCCeEEEEcCCCC----
Confidence 35689999999999999999999875 3688888886532111 11100 0112589999999873
Q ss_pred CCcHHHHHHHhcc--cCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC--CCCc
Q psy4557 397 LKNQDEYVSLSYE--IDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS--ENFQ 469 (958)
Q Consensus 397 L~~~~~~~~l~~~--vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~--~~~~ 469 (958)
.+.+..+..+ +|+|||+||..+.. ..+..+.++|+.||.+|+++|...++++|+|+||.+||+... ..+.
T Consensus 87 ---~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~ 163 (346)
T 4egb_A 87 ---GELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFT 163 (346)
T ss_dssp ---HHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBC
T ss_pred ---HHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcC
Confidence 4667777766 99999999987654 345567889999999999999998889999999999998652 2233
Q ss_pred ccccccCcCCCCCCCCChhHHHHHHHHHHHHHhh-CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---
Q psy4557 470 EDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ-MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP--- 545 (958)
Q Consensus 470 e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~-~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P--- 545 (958)
|+ .+..+.+.|+.||+.+|+++..+.+ .|++++|+||+.|||+..... .++..+++.+..-+.++
T Consensus 164 E~-------~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~ 232 (346)
T 4egb_A 164 EE-------TPLAPNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPE----KLIPLMVTNALEGKKLPLYG 232 (346)
T ss_dssp TT-------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT----SHHHHHHHHHHTTCCCEEET
T ss_pred CC-------CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCcc----chHHHHHHHHHcCCCceeeC
Confidence 32 2235678999999999999987654 599999999999999876432 34455555555433222
Q ss_pred CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHH
Q psy4557 546 DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQ 624 (958)
Q Consensus 546 ~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~ 624 (958)
+.....+|++||++|++++.++.... .+.+||+.++.++++.|+++.+.+. |.+...+.+.. ...
T Consensus 233 ~~~~~~~~i~v~Dva~a~~~~~~~~~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------~~~------- 298 (346)
T 4egb_A 233 DGLNVRDWLHVTDHCSAIDVVLHKGR-VGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVT------DRL------- 298 (346)
T ss_dssp TSCCEECEEEHHHHHHHHHHHHHHCC-TTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEEC------C---------
T ss_pred CCCeEEeeEEHHHHHHHHHHHHhcCC-CCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccC------CCC-------
Confidence 33456899999999999999887655 6789999999999999999988764 65433222100 000
Q ss_pred HHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHC
Q psy4557 625 ILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNS 674 (958)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~ 674 (958)
.......+|+++.++.| |.+...--++.|+.+++|+.+.
T Consensus 299 --------~~~~~~~~d~~k~~~~l---G~~p~~~~~e~l~~~~~~~~~~ 337 (346)
T 4egb_A 299 --------GHDRRYAINAEKMKNEF---DWEPKYTFEQGLQETVQWYEKN 337 (346)
T ss_dssp --------CCCSCCCBCCHHHHHHH---CCCCCCCHHHHHHHHHHHHHHC
T ss_pred --------CCcceeeccHHHHHHHc---CCCCCCCHHHHHHHHHHHHHhh
Confidence 00122347788776655 6554422356788999988753
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-28 Score=271.29 Aligned_cols=289 Identities=17% Similarity=0.157 Sum_probs=208.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||++|+++|++++ .+|+++.|.... .++.++.+|++
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~------------------------~~~~~~~~Dl~------ 66 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQG-RTVRGFDLRPSG------------------------TGGEEVVGSLE------ 66 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTT-CCEEEEESSCCS------------------------SCCSEEESCTT------
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCC------------------------CCccEEecCcC------
Confidence 56799999999999999999999874 789999986432 35677889986
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcccC-hHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCC---CCCCccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLILP-YNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPST---SENFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~~~-~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~---~~~~~e~~~ 473 (958)
+.+.+..+..++|+|||+|+...+... +..++.+|+.||.+|+++|...++++|+|+||.+|||.. ..++.|+
T Consensus 67 -d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~-- 143 (347)
T 4id9_A 67 -DGQALSDAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTED-- 143 (347)
T ss_dssp -CHHHHHHHHTTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTT--
T ss_pred -CHHHHHHHHhCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCC--
Confidence 346788888899999999998776543 367889999999999999999888999999999999863 1122232
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCcee-------------ccCCCCCcC-------hhHHHH
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIG-------------GSLEFKNWN-------LVDLNL 532 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~-------------G~~~~g~~n-------~~d~~~ 532 (958)
.+..+.+.|+.||+.+|+++..+. +.|++++|+||+.|| |+....... ...++.
T Consensus 144 -----~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~ 218 (347)
T 4id9_A 144 -----HPLCPNSPYGLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIA 218 (347)
T ss_dssp -----SCCCCCSHHHHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHH
T ss_pred -----CCCCCCChHHHHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHH
Confidence 233567899999999999998764 569999999999999 654321100 023344
Q ss_pred HHHHHHHHhCCc---CCCCCcCCc----ccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCcccc
Q psy4557 533 YILKAITRLGYA---PDIDWYLEF----TPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTV 604 (958)
Q Consensus 533 ~l~~~~~~~g~~---P~~~~~~~~----~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v 604 (958)
.+++....-..+ .+.+...+| ++||++|++++.++..+...+++||+.++.++++.|+++.+.+. |.+...+
T Consensus 219 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~ 298 (347)
T 4id9_A 219 ELLQSRDIGEPSHILARNENGRPFRMHITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKIAALTGLPIVTV 298 (347)
T ss_dssp HHHHHHCCSSCCEEEEECTTCCBCEECEEEHHHHHHHHHHHHHCGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHcCCCeEEeCCCCcccCCccCcEeHHHHHHHHHHHhcCcccCCCeEEECCCCcccHHHHHHHHHHHhCCCCcee
Confidence 444443221111 122345677 99999999999998876556889999999999999999998764 6654443
Q ss_pred ChHHHHHHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 605 PYEKWFHKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 605 ~~~eW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
+...| . ....+|+++.++.| |.+...--++.|+.+++++.+
T Consensus 299 ~~p~~-------~------------------~~~~~d~~k~~~~l---G~~p~~~~~~~l~~~~~~~~~ 339 (347)
T 4id9_A 299 DFPGD-------G------------------VYYHTSNERIRNTL---GFEAEWTMDRMLEEAATARRQ 339 (347)
T ss_dssp ECSSC-------C------------------CBCCBCCHHHHHHH---CCCCCCCHHHHHHHHHHHHHH
T ss_pred eCCCc-------c------------------cccccCHHHHHHHh---CCCCCCCHHHHHHHHHHHHHh
Confidence 21100 0 02346788776655 554432235678888888764
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=263.56 Aligned_cols=313 Identities=15% Similarity=0.113 Sum_probs=208.8
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
.+|||||||||||++|+++|++++ .+|++++|...... ++ . ..++.++.+|++.
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---~l-------------~--~~~~~~~~~Dl~d------- 67 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRPSSQIQ---RL-------------A--YLEPECRVAEMLD------- 67 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECTTSCGG---GG-------------G--GGCCEEEECCTTC-------
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecChHhhh---hh-------------c--cCCeEEEEecCCC-------
Confidence 479999999999999999999864 78999999754321 00 0 1367889999873
Q ss_pred HHHHHHHhcccCEEEEcccccCc-ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC--CCcccccccC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNL-ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE--NFQEDYTVAD 476 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~-~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~--~~~e~~~~~~ 476 (958)
.+.+..+..++|+|||+|+..+. ..++..++++|+.||.+++++|...++++|+|+||.++|+.... ...|+
T Consensus 68 ~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~E~----- 142 (342)
T 2x4g_A 68 HAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPGHEG----- 142 (342)
T ss_dssp HHHHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCBCTT-----
T ss_pred HHHHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCCCCC-----
Confidence 46777888899999999997653 23456678899999999999999888899999999999986432 12222
Q ss_pred cCCCCCC----CCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCC-CCCcChhHHHHHHHHHHHHhCCcCC-CCCc
Q psy4557 477 FDDFMTT----TSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLE-FKNWNLVDLNLYILKAITRLGYAPD-IDWY 550 (958)
Q Consensus 477 ~~~~~~~----~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~-~g~~n~~d~~~~l~~~~~~~g~~P~-~~~~ 550 (958)
.+..+ .+.|+.||+.+|++++...+.|++++++|||.+||+.. ... . ..+++... .|..+. .+..
T Consensus 143 --~~~~p~~~~~~~Y~~sK~~~e~~~~~~~~~g~~~~ilrp~~v~g~~~~~~~--~----~~~~~~~~-~~~~~~~~~~~ 213 (342)
T 2x4g_A 143 --LFYDSLPSGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVLGELDIGPT--T----GRVITAIG-NGEMTHYVAGQ 213 (342)
T ss_dssp --CCCSSCCTTSCHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEECSCCSSCS--T----THHHHHHH-TTCCCEEECCE
T ss_pred --CCCCccccccChHHHHHHHHHHHHHHHhhcCCcEEEEeCCceECCCCcccc--H----HHHHHHHH-cCCCccccCCC
Confidence 22234 67899999999999987543499999999999999875 211 2 22333222 233221 2356
Q ss_pred CCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCcc-ccChHHHHHHHh--ccCCC-chhHHH
Q psy4557 551 LEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIK-TVPYEKWFHKLN--KRELS-EPLIQI 625 (958)
Q Consensus 551 ~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~-~v~~~eW~~~~~--~~~~~-~~~~~~ 625 (958)
.++++||++|++++.+...... +.+||+.++. +++.|+++.+.+. |.+.. .+|...+..... ..-.. ......
T Consensus 214 ~~~i~v~Dva~~~~~~~~~~~~-g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 291 (342)
T 2x4g_A 214 RNVIDAAEAGRGLLMALERGRI-GERYLLTGHN-LEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPL 291 (342)
T ss_dssp EEEEEHHHHHHHHHHHHHHSCT-TCEEEECCEE-EEHHHHHHHHHHHHTCCCCEEECHHHHHHHHHHHHC----------
T ss_pred cceeeHHHHHHHHHHHHhCCCC-CceEEEcCCc-ccHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 7899999999999998876544 7899999998 9999999998764 76655 455443322110 00000 000000
Q ss_pred HhhccccccccCcccccHHHHHHHhhCCC-CCCCCCHHHHHHHHHHHHHCCCCC
Q psy4557 626 LRNKGKEYLTVNNSYCQRNTLALLKSCDE-TYPETNDHTVRQFLDNLRNSNLLP 678 (958)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~t~~~L~~~~~-~~p~~~~~~~~~~~~~~~~~g~l~ 678 (958)
+.............+|+++.++.| |. ++.++ ++.|+.+++|+.+.|+++
T Consensus 292 ~~~~~~~~~~~~~~~d~~k~~~~l---G~~~p~~~-~~~l~~~~~~~~~~g~~~ 341 (342)
T 2x4g_A 292 LDETAIEVMAGGQFLDGRKAREEL---GFFSTTAL-DDTLLRAIDWFRDNGYFN 341 (342)
T ss_dssp ------CCTTCCCCBCCHHHHHHH---CCCCCSCH-HHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHhcCcccChHHHHHhC---CCCCCCCH-HHHHHHHHHHHHHcCCCC
Confidence 000001111234567888877655 66 44322 568999999999999985
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-28 Score=310.69 Aligned_cols=231 Identities=19% Similarity=0.233 Sum_probs=186.5
Q ss_pred CCCCCEEEEEcCCch-HHHHHHHHHHHcCCeEEEEe-cChhhHHHHHHHh----hcCCCcEEEEEecCCCHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSG-IGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTSL----QNAPGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 713 ~l~~k~~lITGas~G-IG~aia~~la~~Ga~Vi~~~-r~~~~l~~~~~~l----~~~~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
+++||++|||||++| ||+++|+.|+++|++|++++ |+.+.+++..+++ ...+.++.++.||+++.+++++++++
T Consensus 649 ~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~ 728 (1878)
T 2uv9_A 649 TFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNY 728 (1878)
T ss_dssp CCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence 588999999999999 99999999999999999995 6666665554444 33456788999999999999999999
Q ss_pred HHHH---cC-CccEEEEccccCCCc-cccCCC--HHHHHHHHHHHhHHHHHHHHH--HHHHHHhCCCCcEEEEecCccCc
Q psy4557 787 VLAE---LG-HIDILVNNAGVMYFT-LMEKYK--LEEWNAMINVNIKGVLHCIGN--ILPSMLHSRRPGHILNISSNAGV 857 (958)
Q Consensus 787 ~~~~---~g-~iDilInnAG~~~~~-~~~~~~--~~~~~~~~~vN~~g~~~~~~~--~l~~m~~~~~~g~IV~isS~~g~ 857 (958)
+.+. +| +||+||||||+.... ++.+.+ .++|+++|++|+.|++.+++. ++|.|. .++.|+|||+||.+|.
T Consensus 729 i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~-~~~~G~IVnISS~ag~ 807 (1878)
T 2uv9_A 729 IYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYE-TRPAQVILPLSPNHGT 807 (1878)
T ss_dssp HHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-SCCEEECCEECSCSSS
T ss_pred HHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-hCCCCEEEEEcchhhc
Confidence 9998 99 999999999998776 788888 899999999999999999987 778886 3445899999999998
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHHH-HhCCCCcEEEEEECCccc-CCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHH
Q psy4557 858 RPFAGLAVYTGTKYFIEGISGALRQ-EVSDRNIKVTCIQAGDVK-TELLSHSTDRDVVDKYDISKAVPVLTTKEISQSII 935 (958)
Q Consensus 858 ~~~~~~~~Y~asKaa~~~l~~~la~-el~~~gIrv~~v~PG~v~-T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~ 935 (958)
.+ +...|++||+|+.+|++.++. ++++. |+||+|+||+++ |+|.... ............+..+|+|+|..++
T Consensus 808 ~g--g~~aYaASKAAL~aLt~~laAeEla~~-IrVNaVaPG~V~gT~m~~~~---~~~~~~~~~~plr~~sPeEVA~avl 881 (1878)
T 2uv9_A 808 FG--NDGLYSESKLALETLFNRWYSESWGNY-LTICGAVIGWTRGTGLMSAN---NLVAEGVEKLGVRTFSQQEMAFNLL 881 (1878)
T ss_dssp SS--CCSSHHHHHHHHTTHHHHHHHSTTTTT-EEEEEEEECCBCCTTSCSHH---HHTHHHHHTTTCCCBCHHHHHHHHH
T ss_pred cC--CchHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEEEecceecCcccccc---hhhHHHHHhcCCCCCCHHHHHHHHH
Confidence 77 577899999999999987665 57776 999999999999 9986431 1111111112235679999999999
Q ss_pred HHhcCCCCccccceE
Q psy4557 936 FALLQPSHSAVNSIL 950 (958)
Q Consensus 936 ~~l~~~~~~~i~~~~ 950 (958)
|+++.....+++|..
T Consensus 882 fLaSd~a~s~iTGq~ 896 (1878)
T 2uv9_A 882 GLMAPAIVNLCQSDP 896 (1878)
T ss_dssp HHHSHHHHHHHTTSC
T ss_pred HHhCCcccccccCcE
Confidence 977644324455443
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-28 Score=285.52 Aligned_cols=220 Identities=14% Similarity=0.148 Sum_probs=186.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCe-EEEE-ecC-------------hhhHHHHHHHhhcCCCcEEEEEecCCCHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAK-VVAV-ARR-------------IDRLENLKTSLQNAPGSIIVKKLDVTIEND 779 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~-Vi~~-~r~-------------~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~ 779 (958)
++|++|||||++|||+++|+.|+++|++ |+++ +|+ .+.++++.+++...+.++.++.||++|.++
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~ 329 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAEA 329 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHHH
Confidence 6899999999999999999999999997 7777 898 456677777887777889999999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC
Q psy4557 780 VKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP 859 (958)
Q Consensus 780 v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~ 859 (958)
++++++++. .+|+||+||||||+.....+.+.+.++|+++|++|+.|++++++.+.+.|.+++..++||++||+++..+
T Consensus 330 v~~~~~~i~-~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g 408 (525)
T 3qp9_A 330 AARLLAGVS-DAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWG 408 (525)
T ss_dssp HHHHHHTSC-TTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTC
T ss_pred HHHHHHHHH-hcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCC
Confidence 999999998 7999999999999998888999999999999999999999999999999864332689999999999999
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhc
Q psy4557 860 FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 860 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
.++.+.|+++|+++++|+ .++...||+|++|+||+++|+|....... .... ......++|++++..+.+++.
T Consensus 409 ~~g~~~YaaaKa~l~~lA----~~~~~~gi~v~sI~pG~~~tgm~~~~~~~---~~~~-~~g~~~l~pee~a~~l~~~l~ 480 (525)
T 3qp9_A 409 GAGQGAYAAGTAFLDALA----GQHRADGPTVTSVAWSPWEGSRVTEGATG---ERLR-RLGLRPLAPATALTALDTALG 480 (525)
T ss_dssp CTTCHHHHHHHHHHHHHH----TSCCSSCCEEEEEEECCBTTSGGGSSHHH---HHHH-HTTBCCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH----HHHHhCCCCEEEEECCccccccccchhhH---HHHH-hcCCCCCCHHHHHHHHHHHHh
Confidence 999999999999998874 56788899999999999999997432111 1111 223456899999999999887
Q ss_pred CCCC
Q psy4557 940 QPSH 943 (958)
Q Consensus 940 ~~~~ 943 (958)
.+..
T Consensus 481 ~~~~ 484 (525)
T 3qp9_A 481 HGDT 484 (525)
T ss_dssp HTCS
T ss_pred CCCC
Confidence 6643
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=261.12 Aligned_cols=297 Identities=14% Similarity=0.133 Sum_probs=206.9
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|+++|+++ +.+|+++.|...... .....++.++.+|++.+. +..
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~------------------~~~~~~~~~~~~Dl~d~~--~~~- 59 (312)
T 3ko8_A 2 RIVVTGGAGFIGSHLVDKLVEL-GYEVVVVDNLSSGRR------------------EFVNPSAELHVRDLKDYS--WGA- 59 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEECCCSSCCG------------------GGSCTTSEEECCCTTSTT--TTT-
T ss_pred EEEEECCCChHHHHHHHHHHhC-CCEEEEEeCCCCCch------------------hhcCCCceEEECccccHH--HHh-
Confidence 6999999999999999999986 468999998654321 011357889999998754 322
Q ss_pred HHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcccccccC
Q psy4557 401 DEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYTVAD 476 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~~~~ 476 (958)
.... |+|||+|+..... ..+...+.+|+.||.++++.|...++++|+|+||.+||+.... ++.|+
T Consensus 60 -----~~~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~----- 128 (312)
T 3ko8_A 60 -----GIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEE----- 128 (312)
T ss_dssp -----TCCC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----
T ss_pred -----hcCC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCC-----
Confidence 2334 9999999965432 2345677899999999999998888889999999999986532 23332
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh-C---CcCCCCCcC
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL-G---YAPDIDWYL 551 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~-g---~~P~~~~~~ 551 (958)
.+..+.+.|+.||+.+|++++... +.|++++++|||++||+...+ .++..+++..... + ...+.....
T Consensus 129 --~~~~p~~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~ 201 (312)
T 3ko8_A 129 --EPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRH-----GVIYDFIMKLRRNPNVLEVLGDGTQRK 201 (312)
T ss_dssp --SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCS-----SHHHHHHHHHHHCTTEEEEC----CEE
T ss_pred --CCCCCCChHHHHHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCC-----ChHHHHHHHHHhCCCCeEEcCCCCeEE
Confidence 223466899999999999998754 459999999999999987543 2233444443332 1 122334568
Q ss_pred CcccHHHHHHHHHHHhcC---cCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHHHHh
Q psy4557 552 EFTPVDFLTKSLVQLTTN---VNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQILR 627 (958)
Q Consensus 552 ~~~pVD~va~aiv~l~~~---~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~ 627 (958)
++++||++|++++.++.. ....+.+||+.++.++++.|+++.+.+. |.+.+......+..... ..
T Consensus 202 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~-----------~~ 270 (312)
T 3ko8_A 202 SYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRG-----------WP 270 (312)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHSCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC---------------------
T ss_pred eeEEHHHHHHHHHHHHHhccccCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccC-----------CC
Confidence 999999999999998876 3456789999999999999999998764 65433221111110000 00
Q ss_pred hccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy4557 628 NKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNL 676 (958)
Q Consensus 628 ~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~ 676 (958)
.. .....+|+++.++.| |.++...-++.|+++++++.+.||
T Consensus 271 -~~----~~~~~~d~~k~~~~l---G~~p~~~~~~~l~~~~~~~~~~~~ 311 (312)
T 3ko8_A 271 -GD----VKYMTLAVTKLMKLT---GWRPTMTSAEAVKKTAEDLAKELW 311 (312)
T ss_dssp -CC----CSEECBCCHHHHHHH---CCCCSSCHHHHHHHHHHHHHHHHC
T ss_pred -CC----ccccccCHHHHHHHh---CCCCCCCHHHHHHHHHHHHHhhhc
Confidence 00 012457888776665 665543346689999999987765
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=259.03 Aligned_cols=288 Identities=17% Similarity=0.183 Sum_probs=202.4
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++|+++|++++ .++++.|...... .....++.++.+|++.
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~~~~~~~------------------~~~~~~~~~~~~Dl~~------- 54 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVIDNLSSGNE------------------EFVNEAARLVKADLAA------- 54 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS--CEEEECCCSSCCG------------------GGSCTTEEEECCCTTT-------
T ss_pred CEEEEECCCchHHHHHHHHHHhCC--CEEEEEcCCCCCh------------------hhcCCCcEEEECcCCh-------
Confidence 479999999999999999999876 5556665433210 1123578899999873
Q ss_pred HHHHHHHhcccCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccccc
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYTVA 475 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~~~ 475 (958)
+.+..+...+|+|||+|+.... ...+...+++|+.||.++++.|...++++|+|+||.+|||.... +..|+
T Consensus 55 -~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~---- 129 (313)
T 3ehe_A 55 -DDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPED---- 129 (313)
T ss_dssp -SCCHHHHTTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTT----
T ss_pred -HHHHHHhcCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCC----
Confidence 2344566799999999997543 23466788999999999999998888889999999999986432 22222
Q ss_pred CcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhC----CcCCCCCc
Q psy4557 476 DFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLG----YAPDIDWY 550 (958)
Q Consensus 476 ~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g----~~P~~~~~ 550 (958)
.+..+.+.|+.||+.+|++++... +.|++++|+||++|||+...+ .++..+++.....+ ...+.+..
T Consensus 130 ---~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~ 201 (313)
T 3ehe_A 130 ---YPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTH-----GVIYDFIMKLKRNPEELEILGNGEQN 201 (313)
T ss_dssp ---SCCCCCSHHHHHHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCC-----SHHHHHHHHHHHCTTEEEESTTSCCE
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCc-----ChHHHHHHHHHcCCCceEEeCCCCeE
Confidence 223456789999999999998754 569999999999999987643 23344444443321 22334466
Q ss_pred CCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHH---HHHHHhccCCCchhHHHH
Q psy4557 551 LEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEK---WFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 551 ~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~e---W~~~~~~~~~~~~~~~~~ 626 (958)
.+|++||++|++++.++. ....+.+||+.++.++++.|+++.+.+. |.+.+...... |..
T Consensus 202 ~~~i~v~Dva~a~~~~~~-~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~--------------- 265 (313)
T 3ehe_A 202 KSYIYISDCVDAMLFGLR-GDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKG--------------- 265 (313)
T ss_dssp ECCEEHHHHHHHHHHHTT-CCSSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC-----------------------
T ss_pred EeEEEHHHHHHHHHHHhc-cCCCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCcc---------------
Confidence 899999999999999887 3345789999999999999999998764 65432211000 100
Q ss_pred hhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHC
Q psy4557 627 RNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNS 674 (958)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~ 674 (958)
. .....+|+++.+ ++|.++..--++-|+++++++.+.
T Consensus 266 ---~----~~~~~~d~~k~~----~lG~~p~~~~~e~l~~~~~~~~~~ 302 (313)
T 3ehe_A 266 ---D----VPVMLLSIEKLK----RLGWKPRYNSEEAVRMAVRDLVED 302 (313)
T ss_dssp -----------CCBCCHHHH----HHTCCCSCCHHHHHHHHHHHHHHH
T ss_pred ---c----cceeccCHHHHH----HcCCCCCCCHHHHHHHHHHHHHhC
Confidence 0 011346777663 247665533467789999998753
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=258.70 Aligned_cols=304 Identities=16% Similarity=0.158 Sum_probs=211.8
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChh-hHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNK-TLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~-~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++|||||||||||++|+++|+++ +.+|+++.|..... ...+++... ...++.++.+|++.
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~------------~~~~~~~~~~Dl~d----- 66 (341)
T 3enk_A 5 KGTILVTGGAGYIGSHTAVELLAH-GYDVVIADNLVNSKREAIARIEKI------------TGKTPAFHETDVSD----- 66 (341)
T ss_dssp SCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCCSSSCTHHHHHHHHH------------HSCCCEEECCCTTC-----
T ss_pred CcEEEEecCCcHHHHHHHHHHHHC-CCcEEEEecCCcchHHHHHHHHhh------------cCCCceEEEeecCC-----
Confidence 458999999999999999999987 47899999875432 222222211 12478889999873
Q ss_pred CcHHHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccc
Q psy4557 398 KNQDEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQED 471 (958)
Q Consensus 398 ~~~~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~ 471 (958)
.+.+..+.+ .+|+|||+||..... ....+.+..|+.||.++++.|.+.+.++|+|+||.++||.... ++.|+
T Consensus 67 --~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~ 144 (341)
T 3enk_A 67 --ERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDET 144 (341)
T ss_dssp --HHHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTT
T ss_pred --HHHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCC
Confidence 466777766 899999999986542 2334667899999999999999888899999999999986432 23332
Q ss_pred ccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hC-CCCEEEEecCceeccCCCCCcC------hhHHHHHHHHHHHHh-C
Q psy4557 472 YTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QM-GLPVSIVRCGNIGGSLEFKNWN------LVDLNLYILKAITRL-G 542 (958)
Q Consensus 472 ~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~-glp~~I~R~g~i~G~~~~g~~n------~~d~~~~l~~~~~~~-g 542 (958)
.+..+.+.|+.||+.+|++++... +. |++++++||+++||+..++.+. ...++..+.+..... .
T Consensus 145 -------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 217 (341)
T 3enk_A 145 -------FPLSATNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLE 217 (341)
T ss_dssp -------SCCBCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSS
T ss_pred -------CCCCCCChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCC
Confidence 223456789999999999998754 44 5999999999999997655432 123344333332211 1
Q ss_pred Cc---------CCCCCcCCcccHHHHHHHHHHHhcC--cCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHH
Q psy4557 543 YA---------PDIDWYLEFTPVDFLTKSLVQLTTN--VNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWF 610 (958)
Q Consensus 543 ~~---------P~~~~~~~~~pVD~va~aiv~l~~~--~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~ 610 (958)
.+ |+.+...+|++||++|++++.++.. ....+++||+.++.++++.|+++.+.+. |.+.+.....
T Consensus 218 ~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~--- 294 (341)
T 3enk_A 218 KLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVA--- 294 (341)
T ss_dssp CEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEEC---
T ss_pred ceEEeCCccCCCCCCeeEeeEEHHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCC---
Confidence 11 1344568999999999999988865 2346789999999999999999998764 6543321110
Q ss_pred HHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHC
Q psy4557 611 HKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNS 674 (958)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~ 674 (958)
.... . .....+|+++.++.| |.+...--++-|+++++|+.+.
T Consensus 295 ----~~~~-----------~----~~~~~~d~~k~~~~l---G~~p~~~l~~~l~~~~~~~~~~ 336 (341)
T 3enk_A 295 ----RRPG-----------D----VAECYANPAAAAETI---GWKAERDLERMCADHWRWQENN 336 (341)
T ss_dssp ----CCTT-----------C----CSEECBCCHHHHHHH---CCCCCCCHHHHHHHHHHHHHHS
T ss_pred ----CCCC-----------C----ccccccCHHHHHHHc---CCCCCCCHHHHHHHHHHHHHhc
Confidence 0000 0 012346788776555 5554222356789999998864
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=256.41 Aligned_cols=292 Identities=13% Similarity=0.163 Sum_probs=193.7
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|+++|++++..+|+++.|...... ...+ .++. +.+|++ +.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~-----------------~~~~-~~~d~~-------~~ 54 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVNL-----------------VDLN-IADYMD-------KE 54 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG-GHHH-----------------HTSC-CSEEEE-------HH
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch-hhhc-----------------Ccce-eccccc-------cH
Confidence 48999999999999999999875478999998755321 1111 0112 567765 33
Q ss_pred HHHHHHhc-----ccCEEEEcccccCc-ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccc
Q psy4557 401 DEYVSLSY-----EIDMIIHAAAFVNL-ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYT 473 (958)
Q Consensus 401 ~~~~~l~~-----~vd~IiH~AA~v~~-~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~ 473 (958)
+.+..+.+ ++|+|||+|+.... ......++.+|+.||.+++++|...++ +|+|+||.++|+.... ...|+.
T Consensus 55 ~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~- 132 (310)
T 1eq2_A 55 DFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESRE- 132 (310)
T ss_dssp HHHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGG-
T ss_pred HHHHHHHhccccCCCcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCCCCCCCCCC-
Confidence 55666665 49999999998764 345667889999999999999988787 9999999999986432 233321
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC---cCCCCC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY---APDIDW 549 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~---~P~~~~ 549 (958)
+..+.+.|+.||+.+|+++..+. +.|++++++|||.+||+...+..+...++..+++.+..-+. ..+...
T Consensus 133 ------~~~p~~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 206 (310)
T 1eq2_A 133 ------YEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSEN 206 (310)
T ss_dssp ------GCCCSSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC------------
T ss_pred ------CCCCCChhHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCc
Confidence 22456789999999999998764 56999999999999999765332333455555554443222 223335
Q ss_pred -cCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCC-ccccChHHHHHHHhccCCCchhHHHH
Q psy4557 550 -YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYN-IKTVPYEKWFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 550 -~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~-~~~v~~~eW~~~~~~~~~~~~~~~~~ 626 (958)
.++|++||++|++++.+...+. +.+||+.++.++++.|+++.+.+. |.+ ++.++..+|...
T Consensus 207 ~~~~~i~v~Dva~~~~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~-------------- 270 (310)
T 1eq2_A 207 FKRDFVYVGDVADVNLWFLENGV--SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKG-------------- 270 (310)
T ss_dssp -CBCEEEHHHHHHHHHHHHHHCC--CEEEEESCSCCBCHHHHHHHC----------------------------------
T ss_pred ceEccEEHHHHHHHHHHHHhcCC--CCeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCChhhhc--------------
Confidence 7899999999999999887654 789999999999999999988754 544 333343332110
Q ss_pred hhccccccccCcccccHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHH
Q psy4557 627 RNKGKEYLTVNNSYCQRNTLALLKSCDETYPETN-DHTVRQFLDNLR 672 (958)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~-~~~~~~~~~~~~ 672 (958)
.. .....+|+++.+ ++|.+.|..+ ++-|+.+++|+.
T Consensus 271 --~~----~~~~~~~~~~~~----~lG~~~~~~~l~~~l~~~~~~~~ 307 (310)
T 1eq2_A 271 --RY----QAFTQADLTNLR----AAGYDKPFKTVAEGVTEYMAWLN 307 (310)
T ss_dssp ---C----CCSCCBCCHHHH----HTTCCCCCCCHHHHHHHHHHHTC
T ss_pred --cc----ccccccchHHHH----hcCCCCCCCCHHHHHHHHHHHHH
Confidence 00 112335666553 3676334443 356778887754
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=257.00 Aligned_cols=290 Identities=13% Similarity=0.061 Sum_probs=200.7
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++|||||||||||++|+++|++++. +.. ....++.++.+|++
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~~~-----------------------~~~~~~~~~~~D~~------ 48 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKVVADGAG-------LPG-----------------------EDWVFVSSKDADLT------ 48 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHHHHTTTC-------CTT-----------------------CEEEECCTTTCCTT------
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhcCC-------ccc-----------------------ccccccCceecccC------
Confidence 457899999999999999999998753 100 00123445677776
Q ss_pred CcHHHHHHHhcc--cCEEEEcccccCc----ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcc
Q psy4557 398 KNQDEYVSLSYE--IDMIIHAAAFVNL----ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQE 470 (958)
Q Consensus 398 ~~~~~~~~l~~~--vd~IiH~AA~v~~----~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e 470 (958)
+.+.+..+..+ +|+|||+||.++. ......+..+|+.||.+|+++|.+.++++|+|+||.+|||.... ++.|
T Consensus 49 -d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E 127 (319)
T 4b8w_A 49 -DTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDE 127 (319)
T ss_dssp -SHHHHHHHHHHSCCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCG
T ss_pred -CHHHHHHHHhhcCCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccc
Confidence 44667777665 9999999998652 34556778999999999999999988899999999999986532 3444
Q ss_pred cccccCcCCCCCCCC-ChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH----HHHhCCc
Q psy4557 471 DYTVADFDDFMTTTS-GYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA----ITRLGYA 544 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~-gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~----~~~~g~~ 544 (958)
+.+.. .+..+.+ +|+.||+.+|+++..+. +.|++++|+||++|||+..........++..+++. ...-..+
T Consensus 128 ~~~~~---~~~~p~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (319)
T 4b8w_A 128 TMIHN---GPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSAL 204 (319)
T ss_dssp GGGGB---SCCCSSSHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCE
T ss_pred ccccc---CCCCCCcchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCce
Confidence 43211 1123344 69999999999998754 45999999999999999875443333344444443 3332222
Q ss_pred C---CCCCcCCcccHHHHHHHHHHHhcCc-CCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCC
Q psy4557 545 P---DIDWYLEFTPVDFLTKSLVQLTTNV-NNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELS 619 (958)
Q Consensus 545 P---~~~~~~~~~pVD~va~aiv~l~~~~-~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~ 619 (958)
+ +.+...+|++||++|++++.++... ...+.+||+.++.++++.|+++.+.+. |.+.+..... ...
T Consensus 205 ~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-------~~~-- 275 (319)
T 4b8w_A 205 TVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDT-------TKS-- 275 (319)
T ss_dssp EEESCSCCEECEEEHHHHHHHHHHHHHHCCCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEET-------TSC--
T ss_pred EEeCCCCeeEEEEeHHHHHHHHHHHHhccccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCC-------CCC--
Confidence 2 3345689999999999999988763 334679999999999999999998764 6543221100 000
Q ss_pred chhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHHH
Q psy4557 620 EPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETN-DHTVRQFLDNLRN 673 (958)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~-~~~~~~~~~~~~~ 673 (958)
.......+|+++.++.| |.. |..+ ++-|+.+++|+.+
T Consensus 276 -------------~~~~~~~~d~~k~~~~l---g~~-p~~~~~~~l~~~~~~~~~ 313 (319)
T 4b8w_A 276 -------------DGQFKKTASNSKLRTYL---PDF-RFTPFKQAVKETCAWFTD 313 (319)
T ss_dssp -------------CCCSCCCBCCHHHHHHC---TTC-CCCCHHHHHHHHHHHHHH
T ss_pred -------------cCcccccCCHHHHHHhc---CCC-CCCCHHHHHHHHHHHHHH
Confidence 00112347888777655 443 3222 4578889998874
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=261.27 Aligned_cols=297 Identities=14% Similarity=0.105 Sum_probs=211.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++|||||||||||++|+++|++++ .+|++++|...... .....++.++.+|++.
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~------------------~~~~~~v~~~~~Dl~d----- 83 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHM------------------TEDMFCDEFHLVDLRV----- 83 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSSS------------------CGGGTCSEEEECCTTS-----
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEECCCccch------------------hhccCCceEEECCCCC-----
Confidence 35689999999999999999999874 78999999754311 0012468889999873
Q ss_pred CcHHHHHHHhcccCEEEEcccccCc----ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC------C
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNL----ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE------N 467 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~----~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~------~ 467 (958)
.+.+..+..++|+|||+|+..+. ...+..++++|+.||.+++++|.+.++++|+|+||.++|+.... .
T Consensus 84 --~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~ 161 (379)
T 2c5a_A 84 --MENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVS 161 (379)
T ss_dssp --HHHHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCE
T ss_pred --HHHHHHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCC
Confidence 46777788899999999998654 34567788999999999999999888899999999999985321 1
Q ss_pred CcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC-c-
Q psy4557 468 FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY-A- 544 (958)
Q Consensus 468 ~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~-~- 544 (958)
+.|+.. .+..+.+.|+.||+.+|++++.+. +.|++++|+|||.+||+......+...++..+++.+..-+. +
T Consensus 162 ~~E~~~-----~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (379)
T 2c5a_A 162 LKESDA-----WPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFE 236 (379)
T ss_dssp ECGGGG-----SSBCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEE
T ss_pred cCcccC-----CCCCCCChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceE
Confidence 222210 022456789999999999998754 46999999999999998764322222234455554443222 2
Q ss_pred --CCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCch
Q psy4557 545 --PDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEP 621 (958)
Q Consensus 545 --P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~ 621 (958)
.+.....+|++||++|++++.+.... .+.+||+.++.++++.|+++.+.+. |.+.+..+...|. .
T Consensus 237 ~~g~g~~~~~~i~v~Dva~ai~~~l~~~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~------~---- 304 (379)
T 2c5a_A 237 MWGDGLQTRSFTFIDECVEGVLRLTKSD--FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE------G---- 304 (379)
T ss_dssp EESCSCCEECCEEHHHHHHHHHHHHHSS--CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC------C----
T ss_pred EeCCCCeeEEEEEHHHHHHHHHHHhhcc--CCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCCC------C----
Confidence 23345689999999999999988654 4679999999999999999999764 6543322111110 0
Q ss_pred hHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 622 LIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
. ....+|+++.++.| |.++...-++-|+.+++|+.+
T Consensus 305 --------~-----~~~~~d~~k~~~~l---G~~p~~~l~e~l~~~~~~~~~ 340 (379)
T 2c5a_A 305 --------V-----RGRNSDNNLIKEKL---GWAPNMRLKEGLRITYFWIKE 340 (379)
T ss_dssp --------C-----SBCEECCHHHHHHH---SCCCCCCHHHHHHHHHHHHHH
T ss_pred --------c-----ccccCCHHHHHHHh---CCCCCCCHHHHHHHHHHHHHH
Confidence 0 11246777776555 555442235667888887763
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=245.10 Aligned_cols=189 Identities=15% Similarity=0.216 Sum_probs=165.8
Q ss_pred CC-EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 716 NK-VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 716 ~k-~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
|| +++||||++|||+++|++|+ +|++|++++|+.+ .+.+|++++++++++++.+ |++
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-----------------~~~~D~~~~~~~~~~~~~~----~~~ 59 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-----------------DVTVDITNIDSIKKMYEQV----GKV 59 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-----------------SEECCTTCHHHHHHHHHHH----CCE
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-----------------ceeeecCCHHHHHHHHHHh----CCC
Confidence 45 79999999999999999999 9999999999864 3679999999998888764 899
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
|+||||||.....++.+.+.++|++++++|+.|++.+++.+.|.|.+ +|+||++||..+..+.++...|++||++++
T Consensus 60 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~ 136 (202)
T 3d7l_A 60 DAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND---KGSFTLTTGIMMEDPIVQGASAAMANGAVT 136 (202)
T ss_dssp EEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEE---EEEEEEECCGGGTSCCTTCHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhcc---CCEEEEEcchhhcCCCCccHHHHHHHHHHH
Confidence 99999999887777888899999999999999999999999998852 389999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhc
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
+|+++++.|+ ++||+|++|+||++.|++... . ......+...|+|+|+.+++++.
T Consensus 137 ~~~~~~~~e~-~~gi~v~~v~pg~v~~~~~~~-------~--~~~~~~~~~~~~dva~~~~~~~~ 191 (202)
T 3d7l_A 137 AFAKSAAIEM-PRGIRINTVSPNVLEESWDKL-------E--PFFEGFLPVPAAKVARAFEKSVF 191 (202)
T ss_dssp HHHHHHTTSC-STTCEEEEEEECCBGGGHHHH-------G--GGSTTCCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-cCCeEEEEEecCccCCchhhh-------h--hhccccCCCCHHHHHHHHHHhhh
Confidence 9999999999 889999999999999986321 0 11122456899999999998774
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=261.48 Aligned_cols=301 Identities=17% Similarity=0.151 Sum_probs=207.5
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||++|+++|++++..+|++++|...... +++ . ...++.++.+|++.
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~l-------------~-~~~~v~~~~~Dl~d----- 89 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEK--INV-------------P-DHPAVRFSETSITD----- 89 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCG--GGS-------------C-CCTTEEEECSCTTC-----
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCch--hhc-------------c-CCCceEEEECCCCC-----
Confidence 45689999999999999999999875379999998654211 000 0 13578899999873
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccC-CCccEEEEecccccCCCCC-CCc--c
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSIYPSTSE-NFQ--E 470 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v~~~~~~-~~~--e 470 (958)
.+.+..+.+++|+|||+|+..... ..+..++++|+.||.+|+++|... ++++|+|+||.+||+.... ++. |
T Consensus 90 --~~~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E 167 (377)
T 2q1s_A 90 --DALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATE 167 (377)
T ss_dssp --HHHHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------C
T ss_pred --HHHHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCccc
Confidence 466777778999999999987543 345678889999999999999988 8899999999999985432 222 2
Q ss_pred cccccCcCCCC-CCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCC---CCCcCh------hHHHHHHHHHHH
Q psy4557 471 DYTVADFDDFM-TTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLE---FKNWNL------VDLNLYILKAIT 539 (958)
Q Consensus 471 ~~~~~~~~~~~-~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~---~g~~n~------~d~~~~l~~~~~ 539 (958)
+.. ..+. .+.+.|+.||+.+|+++..+. +.|++++|+|||.|||+.. .|.|+. ..++..+++.+.
T Consensus 168 ~~~----~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
T 2q1s_A 168 ETD----IVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKAL 243 (377)
T ss_dssp CCC----CCCSSCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHH
T ss_pred ccc----cccccCCCCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHH
Confidence 210 0022 456789999999999998754 4599999999999999986 333432 234556665554
Q ss_pred HhCCcC---CCCCcCCcccHHHHHHH-HHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCcc--ccChHHHHHH
Q psy4557 540 RLGYAP---DIDWYLEFTPVDFLTKS-LVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIK--TVPYEKWFHK 612 (958)
Q Consensus 540 ~~g~~P---~~~~~~~~~pVD~va~a-iv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~--~v~~~eW~~~ 612 (958)
.-..++ +.+..++|++||++|++ ++.++..+. .+ +||+.++.++++.|+++.+.+. |.+.+ .+|..
T Consensus 244 ~g~~~~~~g~g~~~~~~i~v~Dva~a~i~~~~~~~~-~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~----- 316 (377)
T 2q1s_A 244 KGMPLPLENGGVATRDFIFVEDVANGLIACAADGTP-GG-VYNIASGKETSIADLATKINEITGNNTELDRLPKR----- 316 (377)
T ss_dssp TTCCCCCSGGGCCEECCEEHHHHHHHHHHHHHHCCT-TE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCC-----
T ss_pred cCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHHhcCC-CC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCC-----
Confidence 433222 22356899999999999 988887654 46 9999999999999999998764 65432 22210
Q ss_pred HhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 613 LNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
. ... .....+|+++.++.| |.+++..-++.|+.+++|+.+
T Consensus 317 ----~-----------~~~---~~~~~~d~~k~~~~l---G~~p~~~l~e~l~~~~~~~~~ 356 (377)
T 2q1s_A 317 ----P-----------WDN---SGKRFGSPEKARREL---GFSADVSIDDGLRKTIEWTKA 356 (377)
T ss_dssp ----G-----------GGC---C-CCCCCCHHHHHHH---CCCCCCCHHHHHHHHHHHHHH
T ss_pred ----c-----------ccc---ccccccCHHHHHHHc---CCCCCCCHHHHHHHHHHHHHH
Confidence 0 000 013457888776655 555432235678888888764
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-26 Score=254.32 Aligned_cols=310 Identities=16% Similarity=0.132 Sum_probs=212.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++|||||||||||++|+++|+++ +.+|+++.|..... .+++........ .....++.++.+|++.
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~d----- 92 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDNFATGH--QRNLDEVRSLVS-----EKQWSNFKFIQGDIRN----- 92 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCC--HHHHHHHHHHSC-----HHHHTTEEEEECCTTS-----
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCCccc--hhhHHHHhhhcc-----cccCCceEEEECCCCC-----
Confidence 3468999999999999999999987 47899999965421 112222111110 0012578899999873
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~ 473 (958)
.+.+..+..++|+|||+|+..... ..+....++|+.||.+++++|...++++|+|+||.++|+.... ++.|+
T Consensus 93 --~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~-- 168 (352)
T 1sb8_A 93 --LDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-- 168 (352)
T ss_dssp --HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT--
T ss_pred --HHHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCC--
Confidence 467778888999999999976532 3456678899999999999999888899999999999986432 23332
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC---cCCCCC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY---APDIDW 549 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~---~P~~~~ 549 (958)
.+..+.+.|+.||+.+|+++..+. +.|++++++|||.|||+...+......++..+++....-.. ..+.+.
T Consensus 169 -----~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~ 243 (352)
T 1sb8_A 169 -----TIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGET 243 (352)
T ss_dssp -----CCCCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCC
T ss_pred -----CCCCCCChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCc
Confidence 222456799999999999998754 45999999999999999764432122334444444433221 112345
Q ss_pred cCCcccHHHHHHHHHHHhcC-cCCCCceEEecCCCCCCHHHHHHHHHH-c---CCCccccChHHHHHHHhccCCCchhHH
Q psy4557 550 YLEFTPVDFLTKSLVQLTTN-VNNANKIYNFINTNPIHIKTLVSVLNT-Y---GYNIKTVPYEKWFHKLNKRELSEPLIQ 624 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~~~-~~~~~~v~h~~n~~~~~~~~l~~~l~~-~---g~~~~~v~~~eW~~~~~~~~~~~~~~~ 624 (958)
..+|++||++|++++.++.. ....+.+||+.++.++++.|+++.+.+ . |.+....+. |. ..
T Consensus 244 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~--~~------~~------ 309 (352)
T 1sb8_A 244 SRDFCYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPV--YR------DF------ 309 (352)
T ss_dssp EECCEEHHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCE--EE------CC------
T ss_pred eEeeEEHHHHHHHHHHHHhccccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCce--ec------CC------
Confidence 67999999999999988765 234578999999999999999998865 3 655443221 10 00
Q ss_pred HHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHH
Q psy4557 625 ILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLR 672 (958)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~ 672 (958)
+... .....+|+++.++. +|.++..--++.|+.+++|+.
T Consensus 310 --~~~~----~~~~~~d~~k~~~~---lG~~p~~~~~e~l~~~~~~~~ 348 (352)
T 1sb8_A 310 --REGD----VRHSLADISKAAKL---LGYAPKYDVSAGVALAMPWYI 348 (352)
T ss_dssp --CTTC----CSBCCBCCHHHHHH---TCCCCCCCHHHHHHHHHHHHH
T ss_pred --Cccc----hhhccCCHHHHHHH---hCCCCCCCHHHHHHHHHHHHH
Confidence 0000 01234677766544 466543223567888888875
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=258.45 Aligned_cols=302 Identities=17% Similarity=0.145 Sum_probs=207.7
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCCh-------hhHHHHHHHHHHHhccccccccccCceEEecccCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPN-------KTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSL 392 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~-------~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~ 392 (958)
++|||||||||||++|+++|+++ +.+|+++.|.... ....+++.+. ...++.++.+|++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~------------~~~~~~~~~~D~~~ 69 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQEL------------TGRSVEFEEMDILD 69 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHT-TCCEEEEECSSSSCBCSSSSBHHHHHHHHH------------HTCCCEEEECCTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEecCCcccccccccHHHHHHHHhc------------cCCceEEEECCCCC
Confidence 57999999999999999999986 4789999885432 2222333211 12478889999873
Q ss_pred CCCCCCcHHHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-C
Q psy4557 393 EMLGLKNQDEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-E 466 (958)
Q Consensus 393 ~~lGL~~~~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~ 466 (958)
.+.+..+.. .+|+|||+|+..... ..+..++.+|+.||.+++++|.+.++++|+|+||.++|+... .
T Consensus 70 -------~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~ 142 (348)
T 1ek6_A 70 -------QGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYL 142 (348)
T ss_dssp -------HHHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSS
T ss_pred -------HHHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCC
Confidence 456666666 799999999976532 345567889999999999999888889999999999998542 2
Q ss_pred CCcccccccCcCCCCCC-CCChhHHHHHHHHHHHHHhhCC--CCEEEEecCceeccCCCCCcC------hhHHHHHHHHH
Q psy4557 467 NFQEDYTVADFDDFMTT-TSGYGQSKIVSEYLVLNAGQMG--LPVSIVRCGNIGGSLEFKNWN------LVDLNLYILKA 537 (958)
Q Consensus 467 ~~~e~~~~~~~~~~~~~-~~gY~~SK~~aE~lv~~a~~~g--lp~~I~R~g~i~G~~~~g~~n------~~d~~~~l~~~ 537 (958)
++.|+. +..+ .+.|+.||+.+|+++....+.| ++++|+||+++||+..+|.+. ...++..+++.
T Consensus 143 ~~~E~~-------~~~p~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~ 215 (348)
T 1ek6_A 143 PLDEAH-------PTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQV 215 (348)
T ss_dssp SBCTTS-------CCCCCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHH
T ss_pred CcCCCC-------CCCCCCCchHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHH
Confidence 233321 1223 5789999999999998765335 999999999999996544322 12344444444
Q ss_pred HHHhCC-c---------CCCCCcCCcccHHHHHHHHHHHhcCcC-CCC-ceEEecCCCCCCHHHHHHHHHHc-CCCcccc
Q psy4557 538 ITRLGY-A---------PDIDWYLEFTPVDFLTKSLVQLTTNVN-NAN-KIYNFINTNPIHIKTLVSVLNTY-GYNIKTV 604 (958)
Q Consensus 538 ~~~~g~-~---------P~~~~~~~~~pVD~va~aiv~l~~~~~-~~~-~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v 604 (958)
....+. + |+.+...+|++||++|++++.+..... ..+ ++||+.++.++++.|+++.+.+. |.++...
T Consensus 216 ~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~ 295 (348)
T 1ek6_A 216 AIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYK 295 (348)
T ss_dssp HHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEE
T ss_pred HHhcCCCeEEeCCcccCCCCceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCcee
Confidence 331221 1 233456899999999999998876542 234 89999999999999999998764 6543321
Q ss_pred ChHHHHHHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 605 PYEKWFHKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 605 ~~~eW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
... .... .. ....+|+++.++ .+|.++...=++.|+.+++|+.+
T Consensus 296 ~~~-------~~~~-----------~~----~~~~~d~~k~~~---~lG~~p~~~l~~~l~~~~~w~~~ 339 (348)
T 1ek6_A 296 VVA-------RREG-----------DV----AACYANPSLAQE---ELGWTAALGLDRMCEDLWRWQKQ 339 (348)
T ss_dssp EEC-------CCTT-----------CC----SEECBCCHHHHH---TTCCCCCCCHHHHHHHHHHHHHH
T ss_pred eCC-------CCCc-----------cc----hhhccCHHHHHH---hcCCCCCCCHHHHHHHHHHHHHh
Confidence 100 0000 00 123467776653 45765432235678889998865
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=257.60 Aligned_cols=320 Identities=16% Similarity=0.123 Sum_probs=210.6
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|+++|+++++.+|++++|...... .+ ....++.++.+|++.+ .
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~---~~--------------~~~~~~~~~~~D~~~~------~ 58 (345)
T 2bll_A 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS---RF--------------LNHPHFHFVEGDISIH------S 58 (345)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG---GG--------------TTCTTEEEEECCTTTC------S
T ss_pred eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHH---Hh--------------hcCCCeEEEeccccCc------H
Confidence 69999999999999999999875689999999654211 00 0124788999999742 1
Q ss_pred HHHHHHhcccCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcccccccC
Q psy4557 401 DEYVSLSYEIDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYTVAD 476 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~~~~ 476 (958)
+.+..+..++|+|||+||..+. ...+..++++|+.||.+++++|...+ ++|+|+||.++|+.... .+.|+.+...
T Consensus 59 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~ 137 (345)
T 2bll_A 59 EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLI 137 (345)
T ss_dssp HHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCCSSBCTTTCCCB
T ss_pred HHHHhhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCCCCCcCCcccccc
Confidence 3455566789999999997653 23456678899999999999998887 89999999999986432 2333322110
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCc----ChhHHHHHHHHHHHHhCCc---CCCC
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNW----NLVDLNLYILKAITRLGYA---PDID 548 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~----n~~d~~~~l~~~~~~~g~~---P~~~ 548 (958)
......+.+.|+.||+.+|+++..+. +.|++++++|||.|||+...+.. ....++..+++.+..-..+ .+.+
T Consensus 138 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 217 (345)
T 2bll_A 138 VGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGK 217 (345)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSC
T ss_pred cCcccCcccccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCC
Confidence 00111234589999999999998754 45999999999999999864321 1233455555554443322 2233
Q ss_pred CcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC-CCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHH
Q psy4557 549 WYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN-PIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQ 624 (958)
Q Consensus 549 ~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~-~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~ 624 (958)
...+|++||++|++++.++.... ..+++||+.++. ++++.|+++.+.+. |.+...+....|..... .. ...
T Consensus 218 ~~~~~i~v~Dva~a~~~~~~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~---~~--~~~ 292 (345)
T 2bll_A 218 QKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV---VE--SSS 292 (345)
T ss_dssp CEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEE---C------
T ss_pred EEEEEEEHHHHHHHHHHHHhhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCcccccccc---cc--chh
Confidence 56789999999999999887653 357899999986 89999999998753 54432222222211000 00 000
Q ss_pred HHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHC
Q psy4557 625 ILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNS 674 (958)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~ 674 (958)
++...... .....+|++++++.| |.++..--++-|+.+++|+.+.
T Consensus 293 ~~~~~~~~--~~~~~~d~~k~~~~l---G~~p~~~l~~~l~~~~~~~~~~ 337 (345)
T 2bll_A 293 YYGKGYQD--VEHRKPSIRNAHRCL---DWEPKIDMQETIDETLDFFLRT 337 (345)
T ss_dssp ----------CCCCCBCCHHHHHHH---CCCCCCCHHHHHHHHHHHHHHH
T ss_pred hccccccc--hhhhcccHHHHHHhc---CCCccccHHHHHHHHHHHHHHc
Confidence 11000000 123456888877655 6554322356788888888654
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=265.77 Aligned_cols=313 Identities=11% Similarity=0.003 Sum_probs=208.3
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhH--------------HHHHHHHHHHhccccccccccCce
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTL--------------LQRLEDIMLKYHMSLDLNNYTDRL 383 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~--------------~~rl~~~~~~~~~~~~~~~~~~ri 383 (958)
...+|||||||||||++|+++|+++ +.+|+++.|....... .+++..... ....++
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~v 79 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKK-NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA---------LTGKSI 79 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHH---------HHCCCC
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhC-CCeEEEEEecCccccccccccccccccchhhhhhhhHhh---------ccCCce
Confidence 4568999999999999999999986 4789999875321100 112211110 012578
Q ss_pred EEecccCCCCCCCCCcHHHHHHHhcc--cCEEEEcccccCccc---Ch---HHHHhhhHHHHHHHHHhhccCCC-ccEEE
Q psy4557 384 ILVKSDLSLEMLGLKNQDEYVSLSYE--IDMIIHAAAFVNLIL---PY---NALYKSNVLATKNLIEFSFLNKI-KSFHY 454 (958)
Q Consensus 384 ~~v~gDl~~~~lGL~~~~~~~~l~~~--vd~IiH~AA~v~~~~---~~---~~~~~~NV~gt~~ll~~a~~~~~-k~~~~ 454 (958)
.++.+|++. .+.+..+..+ +|+|||+||..+... .. ..+..+|+.||.+|+++|...+. ++|+|
T Consensus 80 ~~~~~Dl~d-------~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~ 152 (404)
T 1i24_A 80 ELYVGDICD-------FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVK 152 (404)
T ss_dssp EEEESCTTS-------HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EEEECCCCC-------HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 899999873 4567677666 999999999765322 22 23668999999999999987766 59999
Q ss_pred EecccccCCCCCCCccccccc-------CcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCc-
Q psy4557 455 VSTDSIYPSTSENFQEDYTVA-------DFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNW- 525 (958)
Q Consensus 455 vST~~v~~~~~~~~~e~~~~~-------~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~- 525 (958)
+||.+|||....++.|+.... ..+.+..+.+.|+.||+.+|+++..+. +.|++++++|||+|||+...+..
T Consensus 153 ~SS~~vyg~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~ 232 (404)
T 1i24_A 153 LGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEM 232 (404)
T ss_dssp ECCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGG
T ss_pred eCcHHHhCCCCCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCcccc
Confidence 999999986543333321000 000123456789999999999998754 45999999999999999764210
Q ss_pred ----------C--hhHHHHHHHHHHHHhCCc---CCCCCcCCcccHHHHHHHHHHHhcCcCCCC--ceEEecCCCCCCHH
Q psy4557 526 ----------N--LVDLNLYILKAITRLGYA---PDIDWYLEFTPVDFLTKSLVQLTTNVNNAN--KIYNFINTNPIHIK 588 (958)
Q Consensus 526 ----------n--~~d~~~~l~~~~~~~g~~---P~~~~~~~~~pVD~va~aiv~l~~~~~~~~--~v~h~~n~~~~~~~ 588 (958)
+ ...++..+++.+..-..+ ++.+...+|++||++|++++.++......+ .+||+.+ .++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~-~~~s~~ 311 (404)
T 1i24_A 233 HEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFT-EQFSVN 311 (404)
T ss_dssp SGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECS-EEEEHH
T ss_pred ccccccccccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECC-CCCcHH
Confidence 0 012345555554443222 233456899999999999999887654445 7999998 889999
Q ss_pred HHHHHHHH----cCCCccccChHHHHHHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHH
Q psy4557 589 TLVSVLNT----YGYNIKTVPYEKWFHKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTV 664 (958)
Q Consensus 589 ~l~~~l~~----~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~ 664 (958)
|+++.+.+ .|.+++.+....|. . ........+|+++.+ .+|.+....-++.+
T Consensus 312 e~~~~i~~~~~~~g~~~~~~~~p~~~-------~-------------~~~~~~~~~d~~k~~----~LG~~p~~~~~~~l 367 (404)
T 1i24_A 312 ELASLVTKAGSKLGLDVKKMTVPNPR-------V-------------EAEEHYYNAKHTKLM----ELGLEPHYLSDSLL 367 (404)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEECCSS-------C-------------SCSSCCCCBCCCHHH----HTTCCCCCCCHHHH
T ss_pred HHHHHHHHHHHhhCCCccccccCccc-------C-------------ccccceEecCHHHHH----HcCCCcCcCHHHHH
Confidence 99999976 36554432211110 0 000112335666653 36876655557788
Q ss_pred HHHHHHHH
Q psy4557 665 RQFLDNLR 672 (958)
Q Consensus 665 ~~~~~~~~ 672 (958)
+.+++|+.
T Consensus 368 ~~~~~~~~ 375 (404)
T 1i24_A 368 DSLLNFAV 375 (404)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888875
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=252.38 Aligned_cols=295 Identities=17% Similarity=0.181 Sum_probs=207.2
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++|+++|++++ .+|+++.|...... ....+++.++.+|++.
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~------------------~~~~~~~~~~~~D~~~------- 55 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNLQTGHE------------------DAITEGAKFYNGDLRD------- 55 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCG------------------GGSCTTSEEEECCTTC-------
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCcCch------------------hhcCCCcEEEECCCCC-------
Confidence 479999999999999999999864 78999988644211 0112368889999873
Q ss_pred HHHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCccccc
Q psy4557 400 QDEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQEDYT 473 (958)
Q Consensus 400 ~~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~~~ 473 (958)
.+.+..+.. ++|+|||+|+..... ..+..++.+|+.||.+|+++|.+.++++|+|+||.++|+... .++.|+
T Consensus 56 ~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~-- 133 (330)
T 2c20_A 56 KAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEE-- 133 (330)
T ss_dssp HHHHHHHHHHSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTT--
T ss_pred HHHHHHHHhhcCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcC--
Confidence 456777766 899999999986542 345667889999999999999988889999999999998542 223332
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcC-----hhHHHHHHHHHHHHhCC-c--
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWN-----LVDLNLYILKAITRLGY-A-- 544 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n-----~~d~~~~l~~~~~~~g~-~-- 544 (958)
.+..+.+.|+.||+.+|+++.... +.|++++|+||+++||+...|.+. ...++..+++.....+. +
T Consensus 134 -----~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (330)
T 2c20_A 134 -----TMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMM 208 (330)
T ss_dssp -----SCCCCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEE
T ss_pred -----CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEE
Confidence 222456789999999999998755 459999999999999997654321 22344444443321111 1
Q ss_pred -------CCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHh
Q psy4557 545 -------PDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLN 614 (958)
Q Consensus 545 -------P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~ 614 (958)
|+.+..++|++||++|++++.+..... ..+.+||+.++.++++.|+++.+.+. |.++......
T Consensus 209 ~g~~~~~~~g~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~------- 281 (330)
T 2c20_A 209 FGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAP------- 281 (330)
T ss_dssp ECSCCSSSSSSCEECEEEHHHHHHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEEC-------
T ss_pred eCCccccCCCceeEeeEeHHHHHHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCC-------
Confidence 234456899999999999998876532 23689999999999999999998764 6543321100
Q ss_pred ccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCC--CCCHHHHHHHHHHHHH
Q psy4557 615 KRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYP--ETNDHTVRQFLDNLRN 673 (958)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p--~~~~~~~~~~~~~~~~ 673 (958)
.... . .....+|+++.++.| |.++. ++ ++.|+.+++|+.+
T Consensus 282 ~~~~-----------~----~~~~~~d~~k~~~~l---G~~p~~~~l-~~~l~~~~~~~~~ 323 (330)
T 2c20_A 282 RRAG-----------D----PARLVASSQKAKEKL---GWDPRYVNV-KTIIEHAWNWHQK 323 (330)
T ss_dssp CCSS-----------C----CSEECBCCHHHHHHH---CCCCSCCCH-HHHHHHHHHHHHH
T ss_pred CCCC-----------c----ccccccCHHHHHHHh---CCCCccCCH-HHHHHHHHHHHHH
Confidence 0000 0 012346777776555 55433 33 4678888888764
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-27 Score=260.79 Aligned_cols=290 Identities=17% Similarity=0.118 Sum_probs=204.4
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhH-HHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTL-LQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~-~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++|||||||||||++|+++|++++ .+|+++.|....... ...+ .. .....++.++.+|++
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~---------~~--~~~~~~~~~~~~Dl~------ 68 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASG-EEVTVLDDLRVPPMIPPEGT---------GK--FLEKPVLELEERDLS------ 68 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEECCCSSCCSSCCTTS---------SE--EECSCGGGCCHHHHT------
T ss_pred CCeEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcccccchhhh---------hh--hccCCCeeEEeCccc------
Confidence 4689999999999999999999874 689999997542100 0000 00 001234555666654
Q ss_pred CcHHHHHHHhcccCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~ 473 (958)
++|+|||+||..+. ......... |+.||.+++++|...++++|+|+||.+||+.... ++.|+
T Consensus 69 -----------~~d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~-- 134 (321)
T 3vps_A 69 -----------DVRLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPED-- 134 (321)
T ss_dssp -----------TEEEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT--
T ss_pred -----------cCCEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCC--
Confidence 68999999998763 222334455 9999999999999888899999999999986532 23332
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCC-CEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc---CCCC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGL-PVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA---PDID 548 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~gl-p~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~---P~~~ 548 (958)
.+..+.+.|+.||+.+|+++..+. +.|+ +++|+||+++||+...+ ..++..+++....-+.+ .+.+
T Consensus 135 -----~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 205 (321)
T 3vps_A 135 -----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERP----DALVPRLCANLLTRNELPVEGDGE 205 (321)
T ss_dssp -----SCCCCCSHHHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCT----TSHHHHHHHHHHHHSEEEEETTSC
T ss_pred -----CCCCCCChhHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCC----CChHHHHHHHHHcCCCeEEeCCCC
Confidence 223467899999999999998865 4699 99999999999987654 23445555555544432 2344
Q ss_pred CcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccCCCchhHHHHhh
Q psy4557 549 WYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQILRN 628 (958)
Q Consensus 549 ~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~ 628 (958)
...+|++||++|++++.++..... + +||+.++.++++.|+++.+...|.+.+......| .
T Consensus 206 ~~~~~v~v~Dva~~~~~~~~~~~~-g-~~~i~~~~~~s~~e~~~~i~~~g~~~~~~~~~~~-------~----------- 265 (321)
T 3vps_A 206 QRRDFTYITDVVDKLVALANRPLP-S-VVNFGSGQSLSVNDVIRILQATSPAAEVARKQPR-------P----------- 265 (321)
T ss_dssp CEECEEEHHHHHHHHHHGGGSCCC-S-EEEESCSCCEEHHHHHHHHHTTCTTCEEEEECCC-------T-----------
T ss_pred ceEceEEHHHHHHHHHHHHhcCCC-C-eEEecCCCcccHHHHHHHHHHhCCCCccccCCCC-------C-----------
Confidence 678999999999999999877654 6 9999999999999999999844665443311110 0
Q ss_pred ccccccccCcccccHHHHHHHhhCCCCC-CCCCHHHHHHHHHHHHHCCC
Q psy4557 629 KGKEYLTVNNSYCQRNTLALLKSCDETY-PETNDHTVRQFLDNLRNSNL 676 (958)
Q Consensus 629 ~~~~~~~~~~~~~~~~t~~~L~~~~~~~-p~~~~~~~~~~~~~~~~~g~ 676 (958)
.......+|+++.++.| |..+ ..--++.|+.+++|+.+.+.
T Consensus 266 ----~~~~~~~~d~~k~~~~l---G~~p~~~~~~~~l~~~~~~~~~~~~ 307 (321)
T 3vps_A 266 ----NEITEFRADTALQTRQI---GERSGGIGIEEGIRLTLEWWQSRDL 307 (321)
T ss_dssp ----TCCSBCCBCCHHHHHHH---CCCSCCCCHHHHHHHHHHHHHTSCT
T ss_pred ----CCcceeeccHHHHHHHh---CCCCCcCCHHHHHHHHHHHHHhCCC
Confidence 00123457788777665 5555 22235679999999987764
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-26 Score=253.65 Aligned_cols=290 Identities=16% Similarity=0.138 Sum_probs=204.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||++|+++|+++ +.+|+++.|..... . . ++.++.+|++.
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~-------------------~-l--~~~~~~~Dl~d----- 62 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQ-NVEVFGTSRNNEAK-------------------L-P--NVEMISLDIMD----- 62 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCTTCC-------------------C-T--TEEEEECCTTC-----
T ss_pred CcceEEEECCCChHHHHHHHHHHHC-CCEEEEEecCCccc-------------------c-c--eeeEEECCCCC-----
Confidence 4568999999999999999999986 46899999864321 0 0 57788899873
Q ss_pred CcHHHHHHHhcc--cCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccC-CCccEEEEecccccCCC---CCCC
Q psy4557 398 KNQDEYVSLSYE--IDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSIYPST---SENF 468 (958)
Q Consensus 398 ~~~~~~~~l~~~--vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v~~~~---~~~~ 468 (958)
.+.+..+... +|+|||+||..... ..+..++++|+.||.+++++|... +.++|+|+||.++|+.. ..++
T Consensus 63 --~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~ 140 (321)
T 2pk3_A 63 --SQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPV 140 (321)
T ss_dssp --HHHHHHHHHHHCCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSB
T ss_pred --HHHHHHHHHhcCCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCC
Confidence 4566666654 99999999986532 256678889999999999999764 57899999999999853 1222
Q ss_pred cccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHH--hC---
Q psy4557 469 QEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITR--LG--- 542 (958)
Q Consensus 469 ~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~--~g--- 542 (958)
.|+ .+..+.+.|+.||+.+|++++... +.|++++++|||++||+..... .++..+++.... .|
T Consensus 141 ~E~-------~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~----~~~~~~~~~~~~~~~g~~~ 209 (321)
T 2pk3_A 141 SEE-------NQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLG----FVTQDFAKQIVDIEMEKQE 209 (321)
T ss_dssp CTT-------SCCBCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTT----SHHHHHHHHHHHHHTTSSC
T ss_pred CCC-------CCCCCCCccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCC----chHHHHHHHHHHHhcCCCC
Confidence 232 223456799999999999998754 4599999999999999976432 123334433332 13
Q ss_pred ---CcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCC
Q psy4557 543 ---YAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKREL 618 (958)
Q Consensus 543 ---~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~ 618 (958)
.+.+.....++++||++|++++.++... ..+.+||+.++.++++.|+++.+.+. |.+.+.++...|. ..
T Consensus 210 ~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~-~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~-----~~- 282 (321)
T 2pk3_A 210 PIIKVGNLEAVRDFTDVRDIVQAYWLLSQYG-KTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQL-----RP- 282 (321)
T ss_dssp SEEEESCSSCEEEEEEHHHHHHHHHHHHHHC-CTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGC-----CS-
T ss_pred CeEEeCCCCcEEeeEEHHHHHHHHHHHHhCC-CCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccC-----CC-
Confidence 1223345678999999999999988655 35789999999999999999998764 6654433221110 00
Q ss_pred CchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHH
Q psy4557 619 SEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLR 672 (958)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~ 672 (958)
.......+|+++.++.| |.++..--++.|+.+++|+.
T Consensus 283 --------------~~~~~~~~d~~k~~~~l---G~~p~~~~~e~l~~~~~~~~ 319 (321)
T 2pk3_A 283 --------------SEVPTLIGSNKRLKDST---GWKPRIPLEKSLFEILQSYR 319 (321)
T ss_dssp --------------SCCSBCCBCCHHHHHHH---CCCCCSCHHHHHHHHHHHHH
T ss_pred --------------cccchhccCHHHHHHHc---CCCcCCCHHHHHHHHHHHHh
Confidence 00123457888877665 55544222467888888775
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=252.21 Aligned_cols=303 Identities=14% Similarity=0.072 Sum_probs=207.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++|||||||||||++|+++|++++ .+|++++|...... ..++.. . ....++.++.+|++.
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-~~~~~~----~-------~~~~~~~~~~~Dl~d----- 74 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDT-RWRLRE----L-------GIEGDIQYEDGDMAD----- 74 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCC-CHHHHH----T-------TCGGGEEEEECCTTC-----
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCCcccc-ccchhh----c-------cccCceEEEECCCCC-----
Confidence 35689999999999999999999864 79999999754321 111211 0 012478889999873
Q ss_pred CcHHHHHHHhcc--cCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCC-ccEEEEecccccCCCCC-CCcc
Q psy4557 398 KNQDEYVSLSYE--IDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKI-KSFHYVSTDSIYPSTSE-NFQE 470 (958)
Q Consensus 398 ~~~~~~~~l~~~--vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~-k~~~~vST~~v~~~~~~-~~~e 470 (958)
.+.+..+... +|+|||+||..+. ...+..++++|+.||.+|+++|...++ ++|+|+||.++|+.... ++.|
T Consensus 75 --~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E 152 (335)
T 1rpn_A 75 --ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDE 152 (335)
T ss_dssp --HHHHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCT
T ss_pred --HHHHHHHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCc
Confidence 4566666654 6999999997654 345667788999999999999988775 89999999999986432 2333
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc-----
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA----- 544 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~----- 544 (958)
+ .+..+.+.|+.||+.+|+++..+. +.|++++|+||+++||+.....+ ....+..+++.+.. |..
T Consensus 153 ~-------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~-~~~~~~~~~~~~~~-g~~~~~~~ 223 (335)
T 1rpn_A 153 N-------TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEF-VTRKVTDAVARIKL-GKQQELRL 223 (335)
T ss_dssp T-------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS-HHHHHHHHHHHHHT-TSCSCEEE
T ss_pred c-------cCCCCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCc-chHHHHHHHHHHHc-CCCceEEe
Confidence 2 223456789999999999998765 45999999999999998753221 22334444444332 321
Q ss_pred CCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCcc-ccChHHHHHHHhccCCCchh
Q psy4557 545 PDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIK-TVPYEKWFHKLNKRELSEPL 622 (958)
Q Consensus 545 P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~-~v~~~eW~~~~~~~~~~~~~ 622 (958)
.+.+...+|++||++|++++.++..+. +.+||+.++.++++.|+++.+.+. |.+.+ .+++...
T Consensus 224 g~g~~~~~~i~v~Dva~a~~~~~~~~~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~------------- 288 (335)
T 1rpn_A 224 GNVDAKRDWGFAGDYVEAMWLMLQQDK--ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPA------------- 288 (335)
T ss_dssp SCTTCEEECEEHHHHHHHHHHHHHSSS--CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGG-------------
T ss_pred CCCcceeceEEHHHHHHHHHHHHhcCC--CCEEEEeCCCCccHHHHHHHHHHHhCCCcccccccccc-------------
Confidence 223456899999999999999887654 479999999999999999999864 55422 1111000
Q ss_pred HHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 623 IQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
..+... .....+|+++.++.| |.+...--++.|+.+++++.+
T Consensus 289 --~~~~~~----~~~~~~d~~k~~~~l---G~~p~~~l~e~l~~~~~~~~~ 330 (335)
T 1rpn_A 289 --FFRPAE----VDVLLGNPAKAQRVL---GWKPRTSLDELIRMMVEADLR 330 (335)
T ss_dssp --GCCSSC----CCBCCBCTHHHHHHH---CCCCCSCHHHHHHHHHHHHHH
T ss_pred --ccCCCc----chhhcCCHHHHHHhc---CCCcCCCHHHHHHHHHHHHHH
Confidence 000000 112346777776655 555432224567888887753
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=252.30 Aligned_cols=299 Identities=19% Similarity=0.189 Sum_probs=208.8
Q ss_pred ceEEeccccchHHHHHHHHhcC-C-C---CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVD-T-K---CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~-~-~---~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
+|||||||||||++|+++|+++ . + .+|+++.|...... .+++.. + . ...++.++.+|++.
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~-~~~~~~------~----~-~~~~~~~~~~Dl~d--- 66 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN-RANLAP------V----D-ADPRLRFVHGDIRD--- 66 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC-GGGGGG------G----T-TCTTEEEEECCTTC---
T ss_pred eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCc-hhhhhh------c----c-cCCCeEEEEcCCCC---
Confidence 5999999999999999999985 3 4 78999998642110 011100 0 0 12578899999873
Q ss_pred CCCcHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCccc
Q psy4557 396 GLKNQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQED 471 (958)
Q Consensus 396 GL~~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~ 471 (958)
.+.+..+..++|+|||+|+..+.. ..+..++++|+.||.+++++|...++++|+|+||.+|||... .++.|+
T Consensus 67 ----~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~ 142 (337)
T 1r6d_A 67 ----AGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES 142 (337)
T ss_dssp ----HHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT
T ss_pred ----HHHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCC
Confidence 466777788999999999976532 345667889999999999999988888999999999998642 222222
Q ss_pred ccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc---CCC
Q psy4557 472 YTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA---PDI 547 (958)
Q Consensus 472 ~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~---P~~ 547 (958)
.+..+.+.|+.||+.+|++++... +.|++++|+|||.+||+...+ ..++..+++....-..+ .+.
T Consensus 143 -------~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 211 (337)
T 1r6d_A 143 -------SPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP----EKLIPLFVTNLLDGGTLPLYGDG 211 (337)
T ss_dssp -------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT----TSHHHHHHHHHHTTCCEEEETTS
T ss_pred -------CCCCCCCchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCC----CChHHHHHHHHhcCCCcEEeCCC
Confidence 222456789999999999998754 459999999999999997543 12344444444332222 233
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHHHH
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~~~ 626 (958)
+...+|++||++|++++.+.... ..+++||+.++.++++.|+++.+.+. |.+...+.+. ....
T Consensus 212 ~~~~~~i~v~Dva~a~~~~~~~~-~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~------~~~~--------- 275 (337)
T 1r6d_A 212 ANVREWVHTDDHCRGIALVLAGG-RAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKV------ADRK--------- 275 (337)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHC-CTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEE------CCCT---------
T ss_pred CeeEeeEeHHHHHHHHHHHHhCC-CCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceec------CCCC---------
Confidence 35679999999999999987654 35789999999999999999988754 6543211100 0000
Q ss_pred hhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHC
Q psy4557 627 RNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNS 674 (958)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~ 674 (958)
.. .....+|+++.++.| |.+.+..-++.|+.+++|+.+.
T Consensus 276 --~~----~~~~~~d~~k~~~~l---G~~p~~~~~e~l~~~~~~~~~~ 314 (337)
T 1r6d_A 276 --GH----DLRYSLDGGKIEREL---GYRPQVSFADGLARTVRWYREN 314 (337)
T ss_dssp --TC----CCBCCBCCHHHHHHH---CCCCCSCHHHHHHHHHHHHHHC
T ss_pred --CC----cceeecCHHHHHHHc---CCCCCCCHHHHHHHHHHHHHhc
Confidence 00 012346787776655 5554323356788888888653
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=254.74 Aligned_cols=295 Identities=13% Similarity=0.154 Sum_probs=205.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||++|+++|++++..+|+++.|...... +. . ..++. +.+|++
T Consensus 45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----~~-------------~-~~~~~-~~~d~~------ 99 (357)
T 2x6t_A 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK----FV-------------N-LVDLN-IADYMD------ 99 (357)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG----GG-------------G-TTTSC-CSEEEE------
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch----hh-------------c-ccCce-EeeecC------
Confidence 35689999999999999999999875478999988654321 00 0 01222 567765
Q ss_pred CcHHHHHHHhc-----ccCEEEEcccccCc-ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcc
Q psy4557 398 KNQDEYVSLSY-----EIDMIIHAAAFVNL-ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQE 470 (958)
Q Consensus 398 ~~~~~~~~l~~-----~vd~IiH~AA~v~~-~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e 470 (958)
+.+.+..+.+ ++|+|||+|+.... ...+..++++|+.||.+|+++|...++ +|+|+||.++|+.... .+.|
T Consensus 100 -~~~~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~~~~~~E 177 (357)
T 2x6t_A 100 -KEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIES 177 (357)
T ss_dssp -HHHHHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCSSCCCSS
T ss_pred -cHHHHHHHHhhcccCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCCCCCcCC
Confidence 3355666665 59999999998764 345677889999999999999988777 9999999999986432 2333
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc---CC
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA---PD 546 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~---P~ 546 (958)
+. +..+.+.|+.||+.+|+++..+. +.|++++++||+.|||+...+..+...++..+++.+..-+.+ .+
T Consensus 178 ~~-------~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (357)
T 2x6t_A 178 RE-------YEKPLNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEG 250 (357)
T ss_dssp GG-------GCCCSSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETT
T ss_pred cC-------CCCCCChhHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCC
Confidence 22 22456799999999999998764 469999999999999998654333334555666555443322 12
Q ss_pred CCC-cCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCC-ccccChHHHHHHHhccCCCchhH
Q psy4557 547 IDW-YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYN-IKTVPYEKWFHKLNKRELSEPLI 623 (958)
Q Consensus 547 ~~~-~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~-~~~v~~~eW~~~~~~~~~~~~~~ 623 (958)
... ..+|++||++|++++.++.... +.+||+.++.++++.|+++.+.+. |.+ ++.++..+|...
T Consensus 251 ~~~~~~~~i~v~Dva~ai~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~----------- 317 (357)
T 2x6t_A 251 SENFKRDFVYVGDVADVNLWFLENGV--SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKG----------- 317 (357)
T ss_dssp GGGCEECEEEHHHHHHHHHHHHHHCC--CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGGTT-----------
T ss_pred CCcceEccEEHHHHHHHHHHHHhcCC--CCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCccccc-----------
Confidence 334 6799999999999999886654 789999999999999999998764 665 444444333110
Q ss_pred HHHhhccccccccCcccccHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHH
Q psy4557 624 QILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETN-DHTVRQFLDNLR 672 (958)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~-~~~~~~~~~~~~ 672 (958)
.......+|+++.+ ++|+..|..+ ++-|+.+++|+.
T Consensus 318 ---------~~~~~~~~~~~k~~----~lG~~~~~~~l~e~l~~~~~~~~ 354 (357)
T 2x6t_A 318 ---------RYQAFTQADLTNLR----AAGYDKPFKTVAEGVTEYMAWLN 354 (357)
T ss_dssp ---------SCCSBCCCCCHHHH----HTTCCCCCCCHHHHHHHHHHHHC
T ss_pred ---------ccccccccCHHHHH----HcCCCCCCCCHHHHHHHHHHHHh
Confidence 00112345666553 3676334444 356888888764
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=253.40 Aligned_cols=301 Identities=18% Similarity=0.123 Sum_probs=206.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||++|+++|+++ +.+|++++|....... +.+.+ ....++.++.+|++.
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~---~~~~~----------~~~~~~~~~~~Dl~d----- 68 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPS---LFETA----------RVADGMQSEIGDIRD----- 68 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCSSSSC---HHHHT----------TTTTTSEEEECCTTC-----
T ss_pred CCCEEEEECCCchHHHHHHHHHHhC-CCeEEEEeCCCcccch---hhHhh----------ccCCceEEEEccccC-----
Confidence 3468999999999999999999986 4689999997543211 11100 013578899999874
Q ss_pred CcHHHHHHHhcc--cCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCC-CccEEEEecccccCCCCC--CCc
Q psy4557 398 KNQDEYVSLSYE--IDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDSIYPSTSE--NFQ 469 (958)
Q Consensus 398 ~~~~~~~~l~~~--vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~v~~~~~~--~~~ 469 (958)
.+.+..+... +|+|||+||.... ...+..+..+|+.||.+|+++|...+ +++|+|+||.+|||.... +..
T Consensus 69 --~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~ 146 (357)
T 1rkx_A 69 --QNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYR 146 (357)
T ss_dssp --HHHHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBC
T ss_pred --HHHHHHHHHhcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCC
Confidence 3566666655 8999999996432 23455678899999999999998754 789999999999986532 222
Q ss_pred ccccccCcCCCCCCCCChhHHHHHHHHHHHHHhh----------CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHH
Q psy4557 470 EDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ----------MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAIT 539 (958)
Q Consensus 470 e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~----------~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~ 539 (958)
|+ ++..+.+.|+.||+.+|+++..... .|++++++|||.|||+...+. ..++..+++.+.
T Consensus 147 E~-------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~---~~~~~~~~~~~~ 216 (357)
T 1rkx_A 147 EN-------EAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL---DRIVPDILRAFE 216 (357)
T ss_dssp TT-------SCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS---SCHHHHHHHHHH
T ss_pred CC-------CCCCCCCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCcc---ccHHHHHHHHHh
Confidence 22 1224567899999999999987542 399999999999999875321 234556666554
Q ss_pred HhCC--cCCCCCcCCcccHHHHHHHHHHHhcC----cCCCCceEEecC--CCCCCHHHHHHHHHHc-CCCccccChHHHH
Q psy4557 540 RLGY--APDIDWYLEFTPVDFLTKSLVQLTTN----VNNANKIYNFIN--TNPIHIKTLVSVLNTY-GYNIKTVPYEKWF 610 (958)
Q Consensus 540 ~~g~--~P~~~~~~~~~pVD~va~aiv~l~~~----~~~~~~v~h~~n--~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~ 610 (958)
.-.. +++.+...+|++||++|++++.++.. +...+.+||+.+ +.++++.|+++.+.+. |.+.+.....
T Consensus 217 ~g~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~--- 293 (357)
T 1rkx_A 217 QSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDG--- 293 (357)
T ss_dssp TTCCEECSCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-----
T ss_pred cCCCEEECCCCCeeccEeHHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCC---
Confidence 3222 12234568999999999999988753 123568999997 4689999999998764 6543321100
Q ss_pred HHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 611 HKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
. . +.. ......+|+++.++.| |.++..--++.|+.+++|+.+
T Consensus 294 -~------~-------~~~----~~~~~~~d~~k~~~~l---G~~p~~~l~e~l~~~~~~~~~ 335 (357)
T 1rkx_A 294 -N------A-------HPH----EAHYLKLDCSKAKMQL---GWHPRWNLNTTLEYIVGWHKN 335 (357)
T ss_dssp -----------------------CCCCCCBCCHHHHHHH---CCCCCCCHHHHHHHHHHHHHH
T ss_pred -C------C-------CCc----CcccccCCHHHHHHHh---CCCcCCcHHHHHHHHHHHHHH
Confidence 0 0 000 0123457888877665 554332224568888888753
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=257.76 Aligned_cols=313 Identities=17% Similarity=0.181 Sum_probs=207.6
Q ss_pred CceEEeccccchHHHHHHHHh-cCCCCeEEEeccCCChh------hHHHHHHHHHHHhccccccccccCceEEecccCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFL-VDTKCTLFCPVRETPNK------TLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSL 392 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL-~~~~~~V~clvR~~~~~------~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~ 392 (958)
.+|||||||||||++|+++|+ ++ +.+|+++.|..... ...+.+.+.+....-... ..-..++.++.+|++.
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d 80 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDT-NHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP-PWADRYAALEVGDVRN 80 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHC-CCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCC-TTTTCCCEEEESCTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHhC-CCEEEEEecCCcccccccccchHHHHHHHHHHhhcccc-ccCCceEEEEECCCCC
Confidence 479999999999999999999 65 47899999865431 001233322222110000 0001138899999874
Q ss_pred CCCCCCcHHHHHHHhc--c-cCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-
Q psy4557 393 EMLGLKNQDEYVSLSY--E-IDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS- 465 (958)
Q Consensus 393 ~~lGL~~~~~~~~l~~--~-vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~- 465 (958)
.+.+..+.. . +|+|||+||..... ..+..++.+|+.||.+|+++|.+.++++|+|+||.++|+...
T Consensus 81 -------~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~ 153 (397)
T 1gy8_A 81 -------EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTM 153 (397)
T ss_dssp -------HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC
T ss_pred -------HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCc
Confidence 355666655 5 99999999987542 355678899999999999999888889999999999997543
Q ss_pred -------CCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcC-----hhHHHH
Q psy4557 466 -------ENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWN-----LVDLNL 532 (958)
Q Consensus 466 -------~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n-----~~d~~~ 532 (958)
.++.|+ .+..+.+.|+.||+.+|+++.... +.|++++++||++|||+...+.+. ...++.
T Consensus 154 ~~~~~~~~~~~E~-------~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~ 226 (397)
T 1gy8_A 154 GSVSTNAEPIDIN-------AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIP 226 (397)
T ss_dssp -----CCCCBCTT-------SCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHH
T ss_pred ccccccccCcCcc-------CCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHH
Confidence 122222 223456799999999999998754 459999999999999997654321 223444
Q ss_pred HHH----HHHHHhCC-------------c---------CCCCCcCCcccHHHHHHHHHHHhcCcCCC-----C---ceEE
Q psy4557 533 YIL----KAITRLGY-------------A---------PDIDWYLEFTPVDFLTKSLVQLTTNVNNA-----N---KIYN 578 (958)
Q Consensus 533 ~l~----~~~~~~g~-------------~---------P~~~~~~~~~pVD~va~aiv~l~~~~~~~-----~---~v~h 578 (958)
.++ .... .|. + |+.+..++|++||++|++++.++...... + .+||
T Consensus 227 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~n 305 (397)
T 1gy8_A 227 IILGRVMSDIA-PDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFN 305 (397)
T ss_dssp HHHHHHHHHHS-CC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEE
T ss_pred HHHHHHHHHHH-hcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEE
Confidence 443 1111 121 1 13345689999999999999887653322 3 7999
Q ss_pred ecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCC
Q psy4557 579 FINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYP 657 (958)
Q Consensus 579 ~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p 657 (958)
+.++.++++.|+++.+.+. |.+++..... ... ... ....+|+++.++. +|.++.
T Consensus 306 i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-------~~~-----------~~~----~~~~~d~~k~~~~---lG~~p~ 360 (397)
T 1gy8_A 306 LGTSRGYSVREVIEVARKTTGHPIPVRECG-------RRE-----------GDP----AYLVAASDKAREV---LGWKPK 360 (397)
T ss_dssp ESCSCCEEHHHHHHHHHHHHCCCCCEEEEC-------CCT-----------TCC----SEECBCCHHHHHH---TCCCCS
T ss_pred eCCCCcccHHHHHHHHHHHhCCCCCeeeCC-------CCC-----------Ccc----cccccCHHHHHHH---hCCCCC
Confidence 9999999999999998764 6543321100 000 000 1234677776654 466543
Q ss_pred C-CCHHHHHHHHHHHHHC
Q psy4557 658 E-TNDHTVRQFLDNLRNS 674 (958)
Q Consensus 658 ~-~~~~~~~~~~~~~~~~ 674 (958)
. --++.|+.+++|+.+.
T Consensus 361 ~~~l~e~l~~~~~~~~~~ 378 (397)
T 1gy8_A 361 YDTLEAIMETSWKFQRTH 378 (397)
T ss_dssp CCSHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 2 2256788899988753
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=253.05 Aligned_cols=308 Identities=17% Similarity=0.174 Sum_probs=205.2
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++|+++|+++ +.+|+++.|...... ...+.. +. . ..++.++.+|++.
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~-~~~~~~-l~---------~-~~~~~~~~~Dl~d------- 61 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGA-TDNLHW-LS---------S-LGNFEFVHGDIRN------- 61 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSTTH-HHHHHH-HH---------T-TCCCEEEECCTTC-------
T ss_pred cEEEEeCCCchhHHHHHHHHHhC-CCEEEEEeCCCccCc-hhhhhh-hc---------c-CCceEEEEcCCCC-------
Confidence 47999999999999999999986 478999988532111 111111 11 0 2468889999873
Q ss_pred HHHHHHHhcc--cCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCc-cEEEEecccccCCCCC-CCcccc
Q psy4557 400 QDEYVSLSYE--IDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIK-SFHYVSTDSIYPSTSE-NFQEDY 472 (958)
Q Consensus 400 ~~~~~~l~~~--vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k-~~~~vST~~v~~~~~~-~~~e~~ 472 (958)
.+.+..+..+ +|+|||+||.... ...+..++.+|+.||.+|+++|...+.+ +|+|+||.+||+.... ++.|+.
T Consensus 62 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~ 141 (347)
T 1orr_A 62 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETE 141 (347)
T ss_dssp HHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECS
T ss_pred HHHHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCccccc
Confidence 4667777766 9999999998654 2355677889999999999999877765 8999999999985422 111110
Q ss_pred ---------cccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh-
Q psy4557 473 ---------TVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL- 541 (958)
Q Consensus 473 ---------~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~- 541 (958)
.......+..+.+.|+.||+.+|+++.... +.|++++++|||.|||+...+... ..++..+++....-
T Consensus 142 ~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~-~~~~~~~~~~~~~~~ 220 (347)
T 1orr_A 142 TRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYD-QGWVGWFCQKAVEIK 220 (347)
T ss_dssp SCEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTT-BCHHHHHHHHHHHHH
T ss_pred ccccccccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCc-CcHHHHHHHHHHhCc
Confidence 001111223456789999999999998754 459999999999999997644321 12233333333221
Q ss_pred -------CCcCCCCCcCCcccHHHHHHHHHHHhcC-cCCCCceEEecCCC--CCCHHHHHHHHHHc-CCCccccChHHHH
Q psy4557 542 -------GYAPDIDWYLEFTPVDFLTKSLVQLTTN-VNNANKIYNFINTN--PIHIKTLVSVLNTY-GYNIKTVPYEKWF 610 (958)
Q Consensus 542 -------g~~P~~~~~~~~~pVD~va~aiv~l~~~-~~~~~~v~h~~n~~--~~~~~~l~~~l~~~-g~~~~~v~~~eW~ 610 (958)
....+.+...+|++||++|++++.++.. ....+++||+.++. ++++.|+++.+.+. |.+.+..... |
T Consensus 221 ~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~- 298 (347)
T 1orr_A 221 NGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP-V- 298 (347)
T ss_dssp TTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEEC-C-
T ss_pred ccCCCCeEEecCCcceEeeEEHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCC-C-
Confidence 1222344568999999999999988764 22357899999876 59999999998764 6543322110 0
Q ss_pred HHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 611 HKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
... . .....+|+++.++.| |.++..--++.|+.+++++.+
T Consensus 299 -----~~~-----------~----~~~~~~d~~k~~~~l---G~~p~~~~~e~l~~~~~~~~~ 338 (347)
T 1orr_A 299 -----RES-----------D----QRVFVADIKKITNAI---DWSPKVSAKDGVQKMYDWTSS 338 (347)
T ss_dssp -----CSS-----------C----CSEECBCCHHHHHHH---CCCCCSCHHHHHHHHHHHHHH
T ss_pred -----CCC-----------C----cceeecCHHHHHHHH---CCCccCCHHHHHHHHHHHHHH
Confidence 000 0 012346788776655 555432235678888888764
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=250.51 Aligned_cols=300 Identities=21% Similarity=0.204 Sum_probs=206.8
Q ss_pred CceEEeccccchHHHHHHHHhcCC-CCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDT-KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~-~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.+|||||||||||++|+++|++++ +.+|+++.|....... +.+.+ .. ...++.++.+|++.
T Consensus 4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~-~~~~~----------~~-~~~~~~~~~~Dl~d------ 65 (336)
T 2hun_A 4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNP-ANLKD----------LE-DDPRYTFVKGDVAD------ 65 (336)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG-GGGTT----------TT-TCTTEEEEECCTTC------
T ss_pred CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCch-hHHhh----------hc-cCCceEEEEcCCCC------
Confidence 469999999999999999999876 4799999986421100 11100 00 03578899999873
Q ss_pred cHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCC-ccEEEEecccccCCCC-CCCccccc
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKI-KSFHYVSTDSIYPSTS-ENFQEDYT 473 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~-k~~~~vST~~v~~~~~-~~~~e~~~ 473 (958)
.+.+..+...+|+|||+||..+.. ..+..+.++|+.||.+++++|...+. ++|+|+||.+|||... .++.|+
T Consensus 66 -~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-- 142 (336)
T 2hun_A 66 -YELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTEN-- 142 (336)
T ss_dssp -HHHHHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTT--
T ss_pred -HHHHHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCC--
Confidence 466777778999999999986532 34566788999999999999987654 6999999999998642 223232
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---CCCC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---DIDW 549 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~~~~ 549 (958)
.+..+.+.|+.||+.+|++++... +.|++++++|||+|||+.... ..++..+++....-..+| +...
T Consensus 143 -----~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (336)
T 2hun_A 143 -----DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFP----EKLIPKTIIRASLGLKIPIYGTGKN 213 (336)
T ss_dssp -----BCCCCCSHHHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCT----TSHHHHHHHHHHTTCCEEEETC---
T ss_pred -----CCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCc----CchHHHHHHHHHcCCCceEeCCCCc
Confidence 222456789999999999998754 569999999999999987532 123444554444322222 2334
Q ss_pred cCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHHHHhh
Q psy4557 550 YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQILRN 628 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~ 628 (958)
..++++||++|++++.++... ..+++||+.++.++++.|+++.+.+. |.+...+. |. ....
T Consensus 214 ~~~~i~v~Dva~~~~~~~~~~-~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~---~~---~~~~----------- 275 (336)
T 2hun_A 214 VRDWLYVEDHVRAIELVLLKG-ESREIYNISAGEEKTNLEVVKIILRLMGKGEELIE---LV---EDRP----------- 275 (336)
T ss_dssp CEEEEEHHHHHHHHHHHHHHC-CTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEE---EE---CCCT-----------
T ss_pred eeeeEEHHHHHHHHHHHHhCC-CCCCEEEeCCCCcccHHHHHHHHHHHhCCCccccc---cc---CCCC-----------
Confidence 579999999999999887543 35789999999999999999988764 55432111 00 0000
Q ss_pred ccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHC
Q psy4557 629 KGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNS 674 (958)
Q Consensus 629 ~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~ 674 (958)
+. .....+|+++.++.| |.+....-++-|+.+++|+.+.
T Consensus 276 ~~----~~~~~~d~~k~~~~l---G~~p~~~~~~~l~~~~~~~~~~ 314 (336)
T 2hun_A 276 GH----DLRYSLDSWKITRDL---KWRPKYTFDEGIKKTIDWYLKN 314 (336)
T ss_dssp TC----CCCCCBCCHHHHHHH---CCCCSSCHHHHHHHHHHHHHHT
T ss_pred Cc----hhhhcCCHHHHHHHh---CCCCCCCHHHHHHHHHHHHHhC
Confidence 00 012346788777655 5554322356788888888653
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=250.08 Aligned_cols=285 Identities=14% Similarity=0.083 Sum_probs=199.6
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++|+++|+++ +.+|+++.|.. .+|++ +
T Consensus 4 ~~ilVtGatG~iG~~l~~~L~~~-g~~v~~~~r~~--------------------------------~~D~~-------d 43 (321)
T 1e6u_A 4 QRVFIAGHRGMVGSAIRRQLEQR-GDVELVLRTRD--------------------------------ELNLL-------D 43 (321)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-TTEEEECCCTT--------------------------------TCCTT-------C
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CCeEEEEecCc--------------------------------cCCcc-------C
Confidence 57999999999999999999976 46788876631 14544 3
Q ss_pred HHHHHHHhc--ccCEEEEcccccCc----ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCcccc
Q psy4557 400 QDEYVSLSY--EIDMIIHAAAFVNL----ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQEDY 472 (958)
Q Consensus 400 ~~~~~~l~~--~vd~IiH~AA~v~~----~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~~ 472 (958)
.+.+..+.. ++|+|||+|+..+. ......++.+|+.||.+|+++|...++++|+|+||.++|+... .++.|+.
T Consensus 44 ~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~ 123 (321)
T 1e6u_A 44 SRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESE 123 (321)
T ss_dssp HHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGG
T ss_pred HHHHHHHHHhcCCCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCccc
Confidence 466767766 89999999998752 2345677889999999999999988889999999999998642 2333332
Q ss_pred cccCcCCCCCC-CCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHH---hC--C--
Q psy4557 473 TVADFDDFMTT-TSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITR---LG--Y-- 543 (958)
Q Consensus 473 ~~~~~~~~~~~-~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~---~g--~-- 543 (958)
... .+..+ .+.|+.||+.+|+++..+. +.|++++|+||+.|||+...+..+...++..+++.+.. .| .
T Consensus 124 ~~~---~~~~p~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 200 (321)
T 1e6u_A 124 LLQ---GTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVV 200 (321)
T ss_dssp TTS---SCCCGGGHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEE
T ss_pred ccc---CCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceE
Confidence 110 01123 2489999999999998754 45999999999999999865432223345555554433 22 1
Q ss_pred -cCCCCCcCCcccHHHHHHHHHHHhcCcCC--------CCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHH
Q psy4557 544 -APDIDWYLEFTPVDFLTKSLVQLTTNVNN--------ANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKL 613 (958)
Q Consensus 544 -~P~~~~~~~~~pVD~va~aiv~l~~~~~~--------~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~ 613 (958)
..+.+..++|++||++|++++.++..... .+.+||+.++.++++.|+++.+.+. |.+.+.....
T Consensus 201 ~~~~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~------ 274 (321)
T 1e6u_A 201 VWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA------ 274 (321)
T ss_dssp EESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEET------
T ss_pred EcCCCCEEEEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCC------
Confidence 22344678999999999999998865432 2579999999999999999998764 6544321100
Q ss_pred hccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 614 NKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
... .......+|+++.++ | |.+.+.--++.|+.+++|+.+
T Consensus 275 -~~~---------------~~~~~~~~d~~k~~~-l---G~~p~~~~~~~l~~~~~~~~~ 314 (321)
T 1e6u_A 275 -SKP---------------DGTPRKLLDVTRLHQ-L---GWYHEISLEAGLASTYQWFLE 314 (321)
T ss_dssp -TSC---------------CCCSBCCBCCHHHHH-T---TCCCCCCHHHHHHHHHHHHHH
T ss_pred -CCC---------------CCcccccCCHHHHHh-c---CCccCCcHHHHHHHHHHHHHH
Confidence 000 001224577777665 4 665443335678888888764
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=246.36 Aligned_cols=315 Identities=16% Similarity=0.150 Sum_probs=209.2
Q ss_pred CceEEeccccchHHHHHHHHhcCCC----CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTK----CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~----~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
++|||||||||||++|+++|++++. .+|+|++|...... ....++.++.+|++.
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-------------------~~~~~~~~~~~Dl~d--- 59 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-------------------HEDNPINYVQCDISD--- 59 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-------------------CCSSCCEEEECCTTS---
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-------------------cccCceEEEEeecCC---
Confidence 4799999999999999999998653 78999999754321 012478889999873
Q ss_pred CCCcHHHHHHHhcc---cCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccC--CCccEE-------EEecccccCC
Q psy4557 396 GLKNQDEYVSLSYE---IDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLN--KIKSFH-------YVSTDSIYPS 463 (958)
Q Consensus 396 GL~~~~~~~~l~~~---vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~--~~k~~~-------~vST~~v~~~ 463 (958)
.+.+..+..+ +|+|||+||... .++..+.++|+.||.+++++|... ++++|+ |+||.+|||.
T Consensus 60 ----~~~~~~~~~~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~ 133 (364)
T 2v6g_A 60 ----PDDSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGK 133 (364)
T ss_dssp ----HHHHHHHHTTCTTCCEEEECCCCCC--SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTT
T ss_pred ----HHHHHHHHhcCCCCCEEEECCCCCc--chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccc
Confidence 4567777777 999999999764 456778899999999999999886 788987 8999999986
Q ss_pred CC---CCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhh-CC-CCEEEEecCceeccCCCCCcChhHHHHH-HHHH
Q psy4557 464 TS---ENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ-MG-LPVSIVRCGNIGGSLEFKNWNLVDLNLY-ILKA 537 (958)
Q Consensus 464 ~~---~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~-~g-lp~~I~R~g~i~G~~~~g~~n~~d~~~~-l~~~ 537 (958)
.. .++.|+.+. . ...+.| +.+|+++..+.+ .| ++++|+||+.|||+......+. +... +++.
T Consensus 134 ~~~~~~~~~E~~~~----~--~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~--~~~~~~~~~ 201 (364)
T 2v6g_A 134 IESHDPPYTEDLPR----L--KYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNL--VGTLCVYAA 201 (364)
T ss_dssp SCCCCSSBCTTSCC----C--SSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCH--HHHHHHHHH
T ss_pred cccCCCCCCccccC----C--ccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccch--HHHHHHHHH
Confidence 42 223332211 0 124567 569999987654 56 9999999999999876533221 1222 2332
Q ss_pred HH-HhCCcCC-C------CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCcccc--Ch
Q psy4557 538 IT-RLGYAPD-I------DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTV--PY 606 (958)
Q Consensus 538 ~~-~~g~~P~-~------~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v--~~ 606 (958)
.. ..|..+. . ...+++++||++|++++.++.++...+++||+.++.++++.|+++.+.+. |.+...+ +.
T Consensus 202 ~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~ 281 (364)
T 2v6g_A 202 ICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGV 281 (364)
T ss_dssp HHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTC
T ss_pred HHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 21 2343212 1 13478899999999999988766546789999999999999999998764 7654433 22
Q ss_pred HHHHHHHh------------ccC-CCchhHHHHhhcc-ccccccC-cccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHH
Q psy4557 607 EKWFHKLN------------KRE-LSEPLIQILRNKG-KEYLTVN-NSYCQRNTLALLKSCDETYPETNDHTVRQFLDNL 671 (958)
Q Consensus 607 ~eW~~~~~------------~~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~ 671 (958)
..|..+.. ... ......++..-.. ...+... ..+|++++++ +|.+.+.--++-|+++++++
T Consensus 282 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~----lG~~p~~~~~e~l~~~~~~~ 357 (364)
T 2v6g_A 282 DLKLQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE----HGFLGFRNSKNAFISWIDKA 357 (364)
T ss_dssp CCCHHHHTTTCHHHHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH----TTCCCCCCHHHHHHHHHHHH
T ss_pred CccHHHHHhhhHHHHHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHh----cCCCCCCCHHHHHHHHHHHH
Confidence 22222110 000 0000000000000 0000123 3678887743 67763333356799999999
Q ss_pred HHCCCCC
Q psy4557 672 RNSNLLP 678 (958)
Q Consensus 672 ~~~g~l~ 678 (958)
.+.|+||
T Consensus 358 ~~~g~lp 364 (364)
T 2v6g_A 358 KAYKIVP 364 (364)
T ss_dssp HHTTSCC
T ss_pred HHcCCCC
Confidence 9999986
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=250.30 Aligned_cols=304 Identities=17% Similarity=0.132 Sum_probs=207.4
Q ss_pred CceEEeccccchHHHHHHHHhcCC-CCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDT-KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~-~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
++|||||||||||++|+++|++++ +.+|+++.|....... +++. .....++.++.+|++.
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-~~~~------------~~~~~~~~~~~~Dl~d------ 65 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNK-ANLE------------AILGDRVELVVGDIAD------ 65 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG-GGTG------------GGCSSSEEEEECCTTC------
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCh-hHHh------------hhccCCeEEEECCCCC------
Confidence 579999999999999999999874 5799999986431100 0110 0012578899999873
Q ss_pred cHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCC-----Ccc
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-----FQE 470 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~-----~~e 470 (958)
.+.+..+.+.+|+|||+|+..+.. ..++.+.++|+.||.+++++|...+. +|+|+||.+|||..... ..+
T Consensus 66 -~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~ 143 (348)
T 1oc2_A 66 -AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGE 143 (348)
T ss_dssp -HHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTC
T ss_pred -HHHHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCccccccccccc
Confidence 467888888999999999986532 34566788999999999999987776 99999999999854210 000
Q ss_pred -cccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc---C
Q psy4557 471 -DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA---P 545 (958)
Q Consensus 471 -~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~---P 545 (958)
...+.....+..+.+.|+.||+.+|+++..+. +.|++++++|||.|||+..... .++..+++....-... .
T Consensus 144 ~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~ 219 (348)
T 1oc2_A 144 GPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE----KFIPRQITNILAGIKPKLYG 219 (348)
T ss_dssp STTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT----SHHHHHHHHHHHTCCCEEET
T ss_pred ccCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCcc----chHHHHHHHHHcCCCceEec
Confidence 00011111223456799999999999998754 4599999999999999875321 2334444444332222 2
Q ss_pred CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHH
Q psy4557 546 DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQ 624 (958)
Q Consensus 546 ~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~ 624 (958)
+.....+|++||++|++++.++... ..+++||+.++.++++.|+++.+.+. |.+...+++. ....
T Consensus 220 ~~~~~~~~i~v~Dva~~~~~~~~~~-~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~------~~~~------- 285 (348)
T 1oc2_A 220 EGKNVRDWIHTNDHSTGVWAILTKG-RMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHV------TDRA------- 285 (348)
T ss_dssp TSCCEEECEEHHHHHHHHHHHHHHC-CTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEE------CCCT-------
T ss_pred CCCceEeeEEHHHHHHHHHHHhhCC-CCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccC------CCCC-------
Confidence 2335679999999999999887644 35789999999999999999988764 5543222110 0000
Q ss_pred HHhhccccccccCcccccHHHHHHHhhCCCCCCCC-CHHHHHHHHHHHHH
Q psy4557 625 ILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPET-NDHTVRQFLDNLRN 673 (958)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~-~~~~~~~~~~~~~~ 673 (958)
.. .....+|+++.++.| |.++... -++-|+.+++|+.+
T Consensus 286 ----~~----~~~~~~d~~k~~~~l---G~~p~~~~~~~~l~~~~~~~~~ 324 (348)
T 1oc2_A 286 ----GH----DLRYAIDASKLRDEL---GWTPQFTDFSEGLEETIQWYTD 324 (348)
T ss_dssp ----TC----CCBCCBCCHHHHHHH---CCCCSCCCHHHHHHHHHHHHHH
T ss_pred ----Cc----ccccccCHHHHHHHc---CCCCCCCcHHHHHHHHHHHHHH
Confidence 00 112346888777665 5543322 25678888888764
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=251.75 Aligned_cols=243 Identities=14% Similarity=0.094 Sum_probs=180.9
Q ss_pred CceEEeccccchHHHHHHHHhcC-CCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVD-TKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~-~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
++|||||||||||++|+++|+++ ++.+|+++.|...... + ..++.++.+|++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----~----------------~~~~~~~~~D~~d------ 56 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD----V----------------VNSGPFEVVNALD------ 56 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH----H----------------HHSSCEEECCTTC------
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc----c----------------cCCCceEEecCCC------
Confidence 57999999999999999999986 4578999999755321 1 0145678899873
Q ss_pred cHHHHHHHhc--ccCEEEEcccccCcc--cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC--CCcccc
Q psy4557 399 NQDEYVSLSY--EIDMIIHAAAFVNLI--LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE--NFQEDY 472 (958)
Q Consensus 399 ~~~~~~~l~~--~vd~IiH~AA~v~~~--~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~--~~~e~~ 472 (958)
.+.+..+.. .+|+|||+||..... ..+..++++|+.||.+++++|...++++|+|+||.++|+.... ...|+
T Consensus 57 -~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~- 134 (312)
T 2yy7_A 57 -FNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQY- 134 (312)
T ss_dssp -HHHHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSS-
T ss_pred -HHHHHHHHhhcCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCcccc-
Confidence 456776666 899999999976532 3456778899999999999999888899999999999986422 12221
Q ss_pred cccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---CCC
Q psy4557 473 TVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---DID 548 (958)
Q Consensus 473 ~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~~~ 548 (958)
.+..+.+.|+.||+.+|++++... +.|++++++||+.+||+.........+++..++......|..+ +.+
T Consensus 135 ------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (312)
T 2yy7_A 135 ------TIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSE 208 (312)
T ss_dssp ------CBCCCCSHHHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTT
T ss_pred ------CcCCCCchhHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCC
Confidence 223456789999999999998754 4599999999999999865322111233333333334444322 234
Q ss_pred CcCCcccHHHHHHHHHHHhcCcCC---CCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 549 WYLEFTPVDFLTKSLVQLTTNVNN---ANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 549 ~~~~~~pVD~va~aiv~l~~~~~~---~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
..++|++||++|++++.++..+.. .+++||+.+ .++++.|+.+.+.+.
T Consensus 209 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~ 259 (312)
T 2yy7_A 209 TKMPMMYMDDAIDATINIMKAPVEKIKIHSSYNLAA-MSFTPTEIANEIKKH 259 (312)
T ss_dssp CCEEEEEHHHHHHHHHHHHHSCGGGCCCSSCEECCS-EEECHHHHHHHHHTT
T ss_pred ceeeeeeHHHHHHHHHHHHhCcccccccCceEEeCC-CccCHHHHHHHHHHH
Confidence 568999999999999998866532 248999997 789999999999864
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=254.16 Aligned_cols=312 Identities=19% Similarity=0.204 Sum_probs=208.4
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|+++|+++++.+|+++.|...... .+.+.+ .. ...++.++.+|++. .
T Consensus 2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~----------~~-~~~~~~~~~~Dl~d-------~ 62 (361)
T 1kew_A 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN-LESLSD----------IS-ESNRYNFEHADICD-------S 62 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC-GGGGTT----------TT-TCTTEEEEECCTTC-------H
T ss_pred EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCc-hhhhhh----------hh-cCCCeEEEECCCCC-------H
Confidence 59999999999999999999865679999998642110 011100 00 12578899999873 4
Q ss_pred HHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccC--CCc-------cEEEEecccccCCCCC
Q psy4557 401 DEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLN--KIK-------SFHYVSTDSIYPSTSE 466 (958)
Q Consensus 401 ~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~--~~k-------~~~~vST~~v~~~~~~ 466 (958)
+.+..+.. .+|+|||+||..... ..+..+.++|+.||.++++.|... +++ +|+|+||.+|||....
T Consensus 63 ~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~ 142 (361)
T 1kew_A 63 AEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPH 142 (361)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCC
T ss_pred HHHHHHHhhcCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcc
Confidence 56777766 899999999986532 345667889999999999999876 666 9999999999985431
Q ss_pred --CC-c-ccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh
Q psy4557 467 --NF-Q-EDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL 541 (958)
Q Consensus 467 --~~-~-e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~ 541 (958)
.. . .+..+..++.+..+.+.|+.||+.+|+++.... +.|++++++|||.|||+..... .++..+++....-
T Consensus 143 ~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~ 218 (361)
T 1kew_A 143 PDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE----KLIPLVILNALEG 218 (361)
T ss_dssp GGGSCTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT----SHHHHHHHHHHHT
T ss_pred cccccccccCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcc----cHHHHHHHHHHcC
Confidence 00 0 000011112233456799999999999998754 4599999999999999975321 2334444444432
Q ss_pred CCcC---CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCcccc-ChHHHHHHHhcc
Q psy4557 542 GYAP---DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTV-PYEKWFHKLNKR 616 (958)
Q Consensus 542 g~~P---~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v-~~~eW~~~~~~~ 616 (958)
..+| +.....++++||++|++++.++... ..+.+||+.++.++++.|+++.+.+. |.+.... |+.+++...
T Consensus 219 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~--- 294 (361)
T 1kew_A 219 KPLPIYGKGDQIRDWLYVEDHARALHMVVTEG-KAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYV--- 294 (361)
T ss_dssp CCEEEETTSCCEEEEEEHHHHHHHHHHHHHHC-CTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEE---
T ss_pred CCceEcCCCceeEeeEEHHHHHHHHHHHHhCC-CCCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeec---
Confidence 2222 2335578999999999999988654 35789999999999999999988753 4332211 222111000
Q ss_pred CCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHC
Q psy4557 617 ELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNS 674 (958)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~ 674 (958)
. . .+ .......+|+++.++.| |.++...-++-|+++++|+.+.
T Consensus 295 ~-~----------~~-~~~~~~~~d~~k~~~~l---G~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 295 A-D----------RP-GHDRRYAIDAGKISREL---GWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp C-C----------CT-TCCCBCCBCCHHHHHHH---CCCCSCCHHHHHHHHHHHHHHC
T ss_pred C-C----------CC-cccceeecCHHHHHHHh---CCCCccCHHHHHHHHHHHHHhc
Confidence 0 0 00 00122457888887666 5554322356788888888653
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-25 Score=247.40 Aligned_cols=294 Identities=16% Similarity=0.153 Sum_probs=202.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||++|+++|++++ .+|+|+.|...... +.+ .. ..++.++.+|++.
T Consensus 20 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~--~~l-------------~~-~~~~~~~~~Dl~d----- 77 (333)
T 2q1w_A 20 HMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNFATGRR--EHL-------------KD-HPNLTFVEGSIAD----- 77 (333)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCG--GGS-------------CC-CTTEEEEECCTTC-----
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCCccch--hhH-------------hh-cCCceEEEEeCCC-----
Confidence 45789999999999999999999864 79999998643210 000 11 1478889999873
Q ss_pred CcHHHHHHHhcc--cCEEEEcccccCcc-cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccC----CCCCCCcc
Q psy4557 398 KNQDEYVSLSYE--IDMIIHAAAFVNLI-LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYP----STSENFQE 470 (958)
Q Consensus 398 ~~~~~~~~l~~~--vd~IiH~AA~v~~~-~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~----~~~~~~~e 470 (958)
.+.+..+.++ +|+|||+|+..... ..... +++|+.||.+++++|...++++|+|+||.++|+ ....++.|
T Consensus 78 --~~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~~~~E 154 (333)
T 2q1w_A 78 --HALVNQLIGDLQPDAVVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRLDH 154 (333)
T ss_dssp --HHHHHHHHHHHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSBCTTS
T ss_pred --HHHHHHHHhccCCcEEEECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCCCcCC
Confidence 4567777766 99999999987642 11112 789999999999999988888999999999998 32212222
Q ss_pred cccccCcCCCCCCC-CChhHHHHHHHHHHHH-HhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC-cCCC
Q psy4557 471 DYTVADFDDFMTTT-SGYGQSKIVSEYLVLN-AGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY-APDI 547 (958)
Q Consensus 471 ~~~~~~~~~~~~~~-~gY~~SK~~aE~lv~~-a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~-~P~~ 547 (958)
+. .+. +.|+.||+.+|+++.. .. +++++||+++||+... ..++..+++.... |. .+..
T Consensus 155 ~~---------~p~~~~Y~~sK~~~E~~~~~s~~----~~~ilR~~~v~gp~~~-----~~~~~~~~~~~~~-~~~~~~~ 215 (333)
T 2q1w_A 155 PR---------NPANSSYAISKSANEDYLEYSGL----DFVTFRLANVVGPRNV-----SGPLPIFFQRLSE-GKKCFVT 215 (333)
T ss_dssp CC---------CCTTCHHHHHHHHHHHHHHHHTC----CEEEEEESEEESTTCC-----SSHHHHHHHHHHT-TCCCEEE
T ss_pred CC---------CCCCCchHHHHHHHHHHHHhhhC----CeEEEeeceEECcCCc-----CcHHHHHHHHHHc-CCeeeCC
Confidence 21 344 7899999999999987 54 8999999999998721 1233444443332 22 1112
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCC-ccccChHHHHHHHhccCCCchhHHH
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYN-IKTVPYEKWFHKLNKRELSEPLIQI 625 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~-~~~v~~~eW~~~~~~~~~~~~~~~~ 625 (958)
....++++||++|++++.++.... +.+||+.++.++++.|+++.+.+. |.+ +..+|... .
T Consensus 216 ~~~~~~i~v~Dva~ai~~~~~~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--------~-------- 277 (333)
T 2q1w_A 216 KARRDFVFVKDLARATVRAVDGVG--HGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRE--------L-------- 277 (333)
T ss_dssp ECEECEEEHHHHHHHHHHHHTTCC--CEEEECSCSCCEEHHHHHHHHHHHTTCSSCCCCEEEE--------C--------
T ss_pred CceEeeEEHHHHHHHHHHHHhcCC--CCEEEeCCCCCccHHHHHHHHHHHhCCCCceeCCCCC--------c--------
Confidence 345789999999999999887654 789999999999999999998764 655 22232211 0
Q ss_pred HhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q psy4557 626 LRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVP 681 (958)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~~~~ 681 (958)
..........+|+++.++. |.+....-++-|+.+++|+.+.|.++...
T Consensus 278 ----~~~~~~~~~~~d~~k~~~~----G~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 325 (333)
T 2q1w_A 278 ----GPDDAPSILLDPSRTIQDF----GKIEFTPLKETVAAAVAYFREYGVSGGYT 325 (333)
T ss_dssp ----CTTSCCCCCBCCHHHHHHH----CCCCCCCHHHHHHHHHHHHHHHCC-----
T ss_pred ----ccccccccccCCHHHHHhc----CCCcCCCHHHHHHHHHHHHHHHCCCCCCc
Confidence 0001112345677766542 65532223567999999999999886543
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=246.75 Aligned_cols=278 Identities=16% Similarity=0.146 Sum_probs=196.9
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|+++|+ + +.+|+++.|... ++.+|++ +.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~-g~~V~~~~r~~~-----------------------------~~~~D~~-------d~ 43 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-P-VGNLIALDVHSK-----------------------------EFCGDFS-------NP 43 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-T-TSEEEEECTTCS-----------------------------SSCCCTT-------CH
T ss_pred eEEEECCCCHHHHHHHHHhh-c-CCeEEEeccccc-----------------------------cccccCC-------CH
Confidence 69999999999999999999 5 589999988531 2456765 34
Q ss_pred HHHHHHhcc--cCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcccccc
Q psy4557 401 DEYVSLSYE--IDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYTV 474 (958)
Q Consensus 401 ~~~~~l~~~--vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~~ 474 (958)
+.+..+..+ +|+|||+|+..+. ...+...+++|+.||.+++++|...+. +|+|+||.+||+.... ++.|+
T Consensus 44 ~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~~~~~~E~--- 119 (299)
T 1n2s_A 44 KGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQET--- 119 (299)
T ss_dssp HHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTT---
T ss_pred HHHHHHHHhcCCCEEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCCCCCCCCC---
Confidence 566666655 9999999998653 245667789999999999999988776 7999999999986532 23332
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCC-CCCcCCc
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPD-IDWYLEF 553 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~-~~~~~~~ 553 (958)
.+..+.+.|+.||+.+|+++.... .+++|+||+++||+... .++..+++....-..++- .+...++
T Consensus 120 ----~~~~p~~~Y~~sK~~~E~~~~~~~---~~~~ilRp~~v~G~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
T 1n2s_A 120 ----DATSPLNVYGKTKLAGEKALQDNC---PKHLIFRTSWVYAGKGN------NFAKTMLRLAKERQTLSVINDQYGAP 186 (299)
T ss_dssp ----SCCCCSSHHHHHHHHHHHHHHHHC---SSEEEEEECSEECSSSC------CHHHHHHHHHHHCSEEEEECSCEECC
T ss_pred ----CCCCCccHHHHHHHHHHHHHHHhC---CCeEEEeeeeecCCCcC------cHHHHHHHHHhcCCCEEeecCcccCC
Confidence 223456799999999999998764 38999999999998643 234455554443222211 1356899
Q ss_pred ccHHHHHHHHHHHhcCcC--C-CCceEEecCCCCCCHHHHHHHHHHc-CCC--------ccccChHHHHHHHhccCCCch
Q psy4557 554 TPVDFLTKSLVQLTTNVN--N-ANKIYNFINTNPIHIKTLVSVLNTY-GYN--------IKTVPYEKWFHKLNKRELSEP 621 (958)
Q Consensus 554 ~pVD~va~aiv~l~~~~~--~-~~~v~h~~n~~~~~~~~l~~~l~~~-g~~--------~~~v~~~eW~~~~~~~~~~~~ 621 (958)
++||++|++++.+..... . .+.+||+.++.++++.|+.+.+.+. |.+ +..++...|. .
T Consensus 187 i~v~Dva~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~----~------ 256 (299)
T 1n2s_A 187 TGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYP----T------ 256 (299)
T ss_dssp EEHHHHHHHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSC----C------
T ss_pred eeHHHHHHHHHHHHHHhccccccCceEEEeCCCCCCHHHHHHHHHHHhCCCcccccccccccccccccc----C------
Confidence 999999999999886542 2 3789999999999999999988753 432 1222211110 0
Q ss_pred hHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy4557 622 LIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNL 676 (958)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~ 676 (958)
.........+|+++.++.| |.+..++ ++.|+++++++.+.+.
T Consensus 257 ---------~~~~~~~~~~d~~k~~~~l---G~~p~~~-~~~l~~~~~~~~~~~~ 298 (299)
T 1n2s_A 257 ---------PASRPGNSRLNTEKFQRNF---DLILPQW-ELGVKRMLTEMFTTTT 298 (299)
T ss_dssp ---------SSCCCSBCCBCCHHHHHHH---TCCCCBH-HHHHHHHHHHHHSCCC
T ss_pred ---------cCCCCCceeeeHHHHHHhc---CCCCCCH-HHHHHHHHHHHHhcCC
Confidence 0000123457888877665 5655543 5678889998876543
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=246.99 Aligned_cols=292 Identities=15% Similarity=0.109 Sum_probs=205.0
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.+.++|||||||||||++|+++|++++ .+|++++|...... .+ . .. ..++.++.+|++.
T Consensus 18 ~~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---~~---------~---~~-l~~v~~~~~Dl~d---- 76 (330)
T 2pzm_A 18 GSHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDNFATGKR---EV---------L---PP-VAGLSVIEGSVTD---- 76 (330)
T ss_dssp TTCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEECCSSSCG---GG---------S---CS-CTTEEEEECCTTC----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCccch---hh---------h---hc-cCCceEEEeeCCC----
Confidence 356789999999999999999999864 78999999543211 00 0 11 1478889999873
Q ss_pred CCcHHHHHHHhc--ccCEEEEcccccCcccChHHH-HhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC---CCcc
Q psy4557 397 LKNQDEYVSLSY--EIDMIIHAAAFVNLILPYNAL-YKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE---NFQE 470 (958)
Q Consensus 397 L~~~~~~~~l~~--~vd~IiH~AA~v~~~~~~~~~-~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~---~~~e 470 (958)
.+.+..+.. .+|+||||||..... +..+. +++|+.||.+++++|.+.++++|+|+||.++|+.... ++.|
T Consensus 77 ---~~~~~~~~~~~~~D~vih~A~~~~~~-~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E 152 (330)
T 2pzm_A 77 ---AGLLERAFDSFKPTHVVHSAAAYKDP-DDWAEDAATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDS 152 (330)
T ss_dssp ---HHHHHHHHHHHCCSEEEECCCCCSCT-TCHHHHHHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTC
T ss_pred ---HHHHHHHHhhcCCCEEEECCccCCCc-cccChhHHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCC
Confidence 466777777 899999999987642 11111 6899999999999998877889999999999975422 2222
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC--cCCCC
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY--APDID 548 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~--~P~~~ 548 (958)
+. .+.+.|+.||+.+|++++.. +++++++||+++||+... ..++..+++.... |. +.+..
T Consensus 153 ~~---------~~~~~Y~~sK~~~e~~~~~~---~~~~~~iR~~~v~gp~~~-----~~~~~~~~~~~~~-~~~~~~~~~ 214 (330)
T 2pzm_A 153 PT---------APFTSYGISKTAGEAFLMMS---DVPVVSLRLANVTGPRLA-----IGPIPTFYKRLKA-GQKCFCSDT 214 (330)
T ss_dssp CC---------CCCSHHHHHHHHHHHHHHTC---SSCEEEEEECEEECTTCC-----SSHHHHHHHHHHT-TCCCCEESC
T ss_pred CC---------CCCChHHHHHHHHHHHHHHc---CCCEEEEeeeeeECcCCC-----CCHHHHHHHHHHc-CCEEeCCCC
Confidence 21 34578999999999998765 899999999999998741 1233444443322 22 11223
Q ss_pred CcCCcccHHHHHH-HHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCC-ccccChHHHHHHHhccCCCchhHHH
Q psy4557 549 WYLEFTPVDFLTK-SLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYN-IKTVPYEKWFHKLNKRELSEPLIQI 625 (958)
Q Consensus 549 ~~~~~~pVD~va~-aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~-~~~v~~~eW~~~~~~~~~~~~~~~~ 625 (958)
..++++|+++|+ +++.++.... +.+||+.++.++++.|+++.+.+. |.+ +..+|. |. .
T Consensus 215 -~~~~i~~~Dva~~a~~~~~~~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~--~~------~-------- 275 (330)
T 2pzm_A 215 -VRDFLDMSDFLAIADLSLQEGRP--TGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPV--VA------P-------- 275 (330)
T ss_dssp -EECEEEHHHHHHHHHHHTSTTCC--CEEEEESCSCCEEHHHHHHHHHHHHTCCCSSCCCE--EC------C--------
T ss_pred -EecceeHHHHHHHHHHHHhhcCC--CCEEEeCCCCCCCHHHHHHHHHHHhCCCCceeCCC--Cc------c--------
Confidence 578999999999 9999886643 889999999999999999988753 654 222221 10 0
Q ss_pred HhhccccccccCcccccHHH-HHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q psy4557 626 LRNKGKEYLTVNNSYCQRNT-LALLKSCDETYPETNDHTVRQFLDNLRNSNLLPN 679 (958)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~t-~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~~ 679 (958)
.....+|+++. -..|+++|.+...--++-|+.+++|+.+.|++.+
T Consensus 276 ---------~~~~~~d~~k~~~~~l~~lG~~p~~~~~~~l~~~~~~~~~~~~~~~ 321 (330)
T 2pzm_A 276 ---------GADDVPSVVLDPSKTETEFGWKAKVDFKDTITGQLAWYDKYGVTDI 321 (330)
T ss_dssp ---------CTTSCSEECBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCSCSC
T ss_pred ---------hhhccCCHHHHhhchHHHcCCcccCCHHHHHHHHHHHHHhhCcccc
Confidence 01123455544 1223446765433235679999999999998863
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-25 Score=242.75 Aligned_cols=290 Identities=17% Similarity=0.137 Sum_probs=199.8
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|+++|+++ +.+|+++.|...... .....++.++.+|++. .
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~------------------~~~~~~~~~~~~Dl~~-------~ 55 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLAR-GLEVAVLDNLATGKR------------------ENVPKGVPFFRVDLRD-------K 55 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTT-TCEEEEECCCSSCCG------------------GGSCTTCCEECCCTTC-------H
T ss_pred EEEEEeCCcHHHHHHHHHHHHC-CCEEEEEECCCcCch------------------hhcccCeEEEECCCCC-------H
Confidence 5899999999999999999976 468999888432110 0011356778899873 3
Q ss_pred HHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecc-cccCC-CC-CCCcccc
Q psy4557 401 DEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTD-SIYPS-TS-ENFQEDY 472 (958)
Q Consensus 401 ~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~-~v~~~-~~-~~~~e~~ 472 (958)
+.+..+.+ .+|+|||+||..... .......++|+.||.++++.|.+.++++|+|+||. ++||. .. .+..|+
T Consensus 56 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~- 134 (311)
T 2p5y_A 56 EGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEET- 134 (311)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTT-
T ss_pred HHHHHHHHhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCC-
Confidence 55666555 799999999976532 23456778999999999999988888899999999 89985 21 122222
Q ss_pred cccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC---c----
Q psy4557 473 TVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY---A---- 544 (958)
Q Consensus 473 ~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~---~---- 544 (958)
.+..+.+.|+.||+.+|++++... +.|++++++|||+|||+....... ..++..+++....-.. .
T Consensus 135 ------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 207 (311)
T 2p5y_A 135 ------WPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGE-AGVVAIFAERVLKGLPVTLYARKT 207 (311)
T ss_dssp ------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSST-THHHHHHHHHHHHTCCEEEECSSS
T ss_pred ------CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCc-CcHHHHHHHHHHcCCCcEEEeccc
Confidence 122456789999999999998754 469999999999999997643321 2334444444433211 1
Q ss_pred -CCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchh
Q psy4557 545 -PDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPL 622 (958)
Q Consensus 545 -P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~ 622 (958)
.+.....+|++||++|++++.++..+ +.+||+.++.++++.|+++.+.+. |.+.+......+ ..
T Consensus 208 ~~~g~~~~~~i~v~Dva~a~~~~~~~~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-------~~---- 273 (311)
T 2p5y_A 208 PGDEGCVRDYVYVGDVAEAHALALFSL---EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPR-------PG---- 273 (311)
T ss_dssp TTSCCCEECEEEHHHHHHHHHHHHHHC---CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCC-------TT----
T ss_pred CCCCCeEEeeEEHHHHHHHHHHHHhCC---CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCC-------cc----
Confidence 12234579999999999999887653 789999999999999999988764 654332110000 00
Q ss_pred HHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 623 IQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
. .....+|+++.++ +|.++..--++-|+++++|+.+
T Consensus 274 -------~----~~~~~~d~~k~~~----lg~~p~~~~~~~l~~~~~~~~~ 309 (311)
T 2p5y_A 274 -------D----LERSVLSPLKLMA----HGWRPKVGFQEGIRLTVDHFRG 309 (311)
T ss_dssp -------C----CSBCCBCCHHHHT----TTCCCSSCHHHHHHHHHHHHHT
T ss_pred -------c----hhhccCCHHHHHH----CCCCCCCCHHHHHHHHHHHHHh
Confidence 0 0123467776654 4655433224678888888753
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=240.39 Aligned_cols=291 Identities=17% Similarity=0.148 Sum_probs=198.8
Q ss_pred ceEEeccccchHHHHHHHHhcC-CCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVD-TKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~-~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+|||||||||||++|+++|+++ ++.+|+++.|..... .++.++.+|++.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-----------------------~~~~~~~~D~~d------- 50 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT-----------------------GGIKFITLDVSN------- 50 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC-----------------------TTCCEEECCTTC-------
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc-----------------------cCceEEEecCCC-------
Confidence 4899999999999999999986 456899988864321 134577888863
Q ss_pred HHHHHHHhc--ccCEEEEcccccCc--ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC--CCccccc
Q psy4557 400 QDEYVSLSY--EIDMIIHAAAFVNL--ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE--NFQEDYT 473 (958)
Q Consensus 400 ~~~~~~l~~--~vd~IiH~AA~v~~--~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~--~~~e~~~ 473 (958)
.+.+..+.. ++|+|||+||.... ...+...+++|+.||.+|+++|...++++|+|+||.++|+.... ...|
T Consensus 51 ~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e--- 127 (317)
T 3ajr_A 51 RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPS--- 127 (317)
T ss_dssp HHHHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCS---
T ss_pred HHHHHHHHhhcCCcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccc---
Confidence 456666665 89999999997543 23456678899999999999999888899999999999985421 1111
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---CCCC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---DIDW 549 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~~~~ 549 (958)
..+..+.+.|+.||+.+|++++.+. +.|++++++||+.+||+.........+++..++......+..+ +.+.
T Consensus 128 ----~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (317)
T 3ajr_A 128 ----ITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNR 203 (317)
T ss_dssp ----SSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTC
T ss_pred ----cccCCCCchHHHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccc
Confidence 1223467899999999999998654 5699999999999999764322111233333333334434322 2245
Q ss_pred cCCcccHHHHHHHHHHHhcCcCC---CCceEEecCCCCCCHHHHHHHHHHc-C-CCccccChHHHHHHHhccCCCchhHH
Q psy4557 550 YLEFTPVDFLTKSLVQLTTNVNN---ANKIYNFINTNPIHIKTLVSVLNTY-G-YNIKTVPYEKWFHKLNKRELSEPLIQ 624 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~~~~~~---~~~v~h~~n~~~~~~~~l~~~l~~~-g-~~~~~v~~~eW~~~~~~~~~~~~~~~ 624 (958)
.++|++||++|++++.+..++.. .+.+||+.+ ..+++.|+.+.+.+. | .++...|. +. .
T Consensus 204 ~~~~i~v~Dva~a~~~~l~~~~~~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~~~~i~~~~~--~~-------------~ 267 (317)
T 3ajr_A 204 ALPMMYMPDALKALVDLYEADRDKLVLRNGYNVTA-YTFTPSELYSKIKERIPEFEIEYKED--FR-------------D 267 (317)
T ss_dssp CEEEEEHHHHHHHHHHHHHCCGGGCSSCSCEECCS-EEECHHHHHHHHHTTCCSCCEEECCC--HH-------------H
T ss_pred eeeeeEHHHHHHHHHHHHhCCccccccCceEecCC-ccccHHHHHHHHHHHCCccccccccc--cc-------------h
Confidence 68999999999999988765432 357999997 579999999999864 3 11111110 10 0
Q ss_pred HHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 625 ILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
.+... ....+|+++.++.| |.++..--++.|+.+++|+.+
T Consensus 268 ~~~~~------~~~~~d~~k~~~~l---G~~p~~~~~~~l~~~~~~~~~ 307 (317)
T 3ajr_A 268 KIAAT------WPESLDSSEASNEW---GFSIEYDLDRTIDDMIDHISE 307 (317)
T ss_dssp HHHTT------SCSCBCCHHHHHHH---CCCCCCCHHHHHHHHHHHHHH
T ss_pred hhccc------cccccCHHHHHHHc---CCCCCCCHHHHHHHHHHHHHh
Confidence 01100 12346788777655 554332224567788887753
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=302.01 Aligned_cols=222 Identities=21% Similarity=0.232 Sum_probs=174.0
Q ss_pred CCCCCEEEEEcCCch-HHHHHHHHHHHcCCeEEEEecChhh-----HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSG-IGEQLVKDLVTLGAKVVAVARRIDR-----LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 713 ~l~~k~~lITGas~G-IG~aia~~la~~Ga~Vi~~~r~~~~-----l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
.|+||++||||||+| ||+++|+.|+++|++|++++|+.+. ++++.+++...+.++..+++|+++++++++++++
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence 379999999999999 9999999999999999999999776 7777777776677888999999999999999999
Q ss_pred HHH----HcCCccEEEEccccC----C-CccccCCCHHHHHHH----HHHHhHHHHHHHHHHHHHHHhCCCC---cEEEE
Q psy4557 787 VLA----ELGHIDILVNNAGVM----Y-FTLMEKYKLEEWNAM----INVNIKGVLHCIGNILPSMLHSRRP---GHILN 850 (958)
Q Consensus 787 ~~~----~~g~iDilInnAG~~----~-~~~~~~~~~~~~~~~----~~vN~~g~~~~~~~~l~~m~~~~~~---g~IV~ 850 (958)
+.+ .||+||+||||||+. . .....+.+.++|++. +++|+.+++.+++.+.|.|...+.. +.|++
T Consensus 2213 i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~ 2292 (3089)
T 3zen_D 2213 VGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLP 2292 (3089)
T ss_dssp HTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEE
Confidence 998 899999999999982 1 122333344555544 9999999999999999999754321 34455
Q ss_pred ecCccCcCCCCCChhhhHHHHHHHHHHHHHHHH--hCCCCcEEEEEECCccc-CCCCCCCCChhhhhhhccccCCCCCCH
Q psy4557 851 ISSNAGVRPFAGLAVYTGTKYFIEGISGALRQE--VSDRNIKVTCIQAGDVK-TELLSHSTDRDVVDKYDISKAVPVLTT 927 (958)
Q Consensus 851 isS~~g~~~~~~~~~Y~asKaa~~~l~~~la~e--l~~~gIrv~~v~PG~v~-T~~~~~~~~~~~~~~~~~~~~~~~~~p 927 (958)
+|+..+. +++...|++||+|+.+|+|+|+.| ++ .+|+||+|+||+|+ |+|....... ..... ....+..+|
T Consensus 2293 ~ss~~g~--~g~~~aYsASKaAl~~LtrslA~E~~~a-~~IrVn~v~PG~v~tT~l~~~~~~~--~~~~~-~~~~r~~~P 2366 (3089)
T 3zen_D 2293 GSPNRGM--FGGDGAYGEAKSALDALENRWSAEKSWA-ERVSLAHALIGWTKGTGLMGQNDAI--VSAVE-EAGVTTYTT 2366 (3089)
T ss_dssp ECSSTTS--CSSCSSHHHHGGGHHHHHHHHHHCSTTT-TTEEEEEEECCCEECSTTTTTTTTT--HHHHG-GGSCBCEEH
T ss_pred CCccccc--CCCchHHHHHHHHHHHHHHHHHhccccC-CCeEEEEEeecccCCCcccccchhH--HHHHH-hcCCCCCCH
Confidence 5555443 345668999999999999999999 66 46999999999999 7765432111 11111 122345699
Q ss_pred HHHHHHHHHHhcC
Q psy4557 928 KEISQSIIFALLQ 940 (958)
Q Consensus 928 ~~ia~~i~~~l~~ 940 (958)
+|+|..++|+++.
T Consensus 2367 eEIA~avlfLaS~ 2379 (3089)
T 3zen_D 2367 DEMAAMLLDLCTV 2379 (3089)
T ss_dssp HHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhCh
Confidence 9999999996653
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=240.98 Aligned_cols=269 Identities=17% Similarity=0.166 Sum_probs=192.1
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|++.|+++ +.+|+++.|. .+|++ +.
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~---------------------------------~~D~~-------d~ 45 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPE-EYDIYPFDKK---------------------------------LLDIT-------NI 45 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTT-TEEEEEECTT---------------------------------TSCTT-------CH
T ss_pred EEEEECCCCHHHHHHHHHHHhC-CCEEEEeccc---------------------------------ccCCC-------CH
Confidence 7999999999999999999876 4789999881 24544 34
Q ss_pred HHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCcccccc
Q psy4557 401 DEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQEDYTV 474 (958)
Q Consensus 401 ~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~~~~ 474 (958)
+.+..+.. ++|+|||+||..+.. ..+.....+|+.||.+++++|...+. +|+|+||.+||+... .++.|+
T Consensus 46 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~~~~~~E~--- 121 (287)
T 3sc6_A 46 SQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDRPEGYDEF--- 121 (287)
T ss_dssp HHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCCSSCBCTT---
T ss_pred HHHHHHHHhcCCCEEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCCCCCCCCC---
Confidence 56666665 699999999987643 35667889999999999999988776 699999999998643 233333
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCC-CCCcCCc
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPD-IDWYLEF 553 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~-~~~~~~~ 553 (958)
++..+.+.|+.||+.+|++++... .+++|+||+.+||+... .++..+++.....+.++- .+...++
T Consensus 122 ----~~~~p~~~Y~~sK~~~E~~~~~~~---~~~~ilR~~~v~G~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (287)
T 3sc6_A 122 ----HNPAPINIYGASKYAGEQFVKELH---NKYFIVRTSWLYGKYGN------NFVKTMIRLGKEREEISVVADQIGSP 188 (287)
T ss_dssp ----SCCCCCSHHHHHHHHHHHHHHHHC---SSEEEEEECSEECSSSC------CHHHHHHHHHTTCSEEEEECSCEECC
T ss_pred ----CCCCCCCHHHHHHHHHHHHHHHhC---CCcEEEeeeeecCCCCC------cHHHHHHHHHHcCCCeEeecCcccCc
Confidence 223567899999999999998764 37899999999998643 234555554433222221 1356899
Q ss_pred ccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCcc--ccChHHHHHHHhccCCCchhHHHHhhcc
Q psy4557 554 TPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIK--TVPYEKWFHKLNKRELSEPLIQILRNKG 630 (958)
Q Consensus 554 ~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~--~v~~~eW~~~~~~~~~~~~~~~~~~~~~ 630 (958)
++||++|++++.++.++. +.+||+.++.++++.|+.+.+.+. |.+.+ .+|..+|.. ... .
T Consensus 189 i~v~Dva~~~~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~----~~~-----------~ 251 (287)
T 3sc6_A 189 TYVADLNVMINKLIHTSL--YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGA----AAA-----------R 251 (287)
T ss_dssp EEHHHHHHHHHHHHTSCC--CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCC----SSC-----------C
T ss_pred eEHHHHHHHHHHHHhCCC--CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCc----ccC-----------C
Confidence 999999999999987765 679999999999999999988764 76544 344443311 000 0
Q ss_pred ccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHH
Q psy4557 631 KEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLR 672 (958)
Q Consensus 631 ~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~ 672 (958)
.....+|+++.+ .+|...+.-=++-|+.+++++.
T Consensus 252 ----~~~~~~d~~k~~----~lg~~p~~~~~~~l~~~~~~~~ 285 (287)
T 3sc6_A 252 ----PKYSIFQHNMLR----LNGFLQMPSWEEGLERFFIETK 285 (287)
T ss_dssp ----CSBCCBCCHHHH----HTTCCCCCBHHHHHHHHHHHTC
T ss_pred ----CCcccccHHHHH----hhCCCCCccHHHHHHHHHHHHh
Confidence 012345666654 4565532222456777777653
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-26 Score=264.26 Aligned_cols=214 Identities=16% Similarity=0.242 Sum_probs=177.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecCh---hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRI---DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~---~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+|++|||||++|||+++|+.|+++|+ +|++++|+. +.++++.+++...+.++.++.||++|.++++++++++.+.
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~- 317 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED- 317 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT-
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh-
Confidence 68999999999999999999999999 889999973 4577788888888888999999999999999999998776
Q ss_pred CCccEEEEccccC-CCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~-~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+++|+||||||+. ...++.+.+.++|+++|++|+.|++++.+.+.+. ..++||++||+++..+.++++.|+++|
T Consensus 318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~-----~~~~iV~~SS~a~~~g~~g~~~YaAaK 392 (496)
T 3mje_A 318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL-----DLDAFVLFSSGAAVWGSGGQPGYAAAN 392 (496)
T ss_dssp SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS-----CCSEEEEEEEHHHHTTCTTCHHHHHHH
T ss_pred CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc-----CCCEEEEEeChHhcCCCCCcHHHHHHH
Confidence 7999999999998 6778899999999999999999999988876442 358999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
+++++|++.++ ..||++++|+||++.|+....... ..... .......++|++.+..+.+++..+.
T Consensus 393 a~ldala~~~~----~~Gi~v~sV~pG~w~~~gm~~~~~--~~~~l-~~~g~~~l~pe~~~~~l~~~l~~~~ 457 (496)
T 3mje_A 393 AYLDALAEHRR----SLGLTASSVAWGTWGEVGMATDPE--VHDRL-VRQGVLAMEPEHALGALDQMLENDD 457 (496)
T ss_dssp HHHHHHHHHHH----HTTCCCEEEEECEESSSCC--------CHHH-HHTTEEEECHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH----hcCCeEEEEECCcccCCccccChH--HHHHH-HhcCCCCCCHHHHHHHHHHHHcCCC
Confidence 99999887544 569999999999987654332111 11111 1122335789999999999886554
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=242.82 Aligned_cols=296 Identities=17% Similarity=0.155 Sum_probs=202.5
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||++|+++|+++ +.+|+++.|...... ..+. .+ . ...++.++.+|+..+.
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~--~~~~----~~---~----~~~~~~~~~~D~~~~~--- 88 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMD-GHEVTVVDNFFTGRK--RNVE----HW---I----GHENFELINHDVVEPL--- 88 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCG--GGTG----GG---T----TCTTEEEEECCTTSCC---
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHC-CCEEEEEeCCCccch--hhhh----hh---c----cCCceEEEeCccCChh---
Confidence 4578999999999999999999986 478999998643211 0010 00 0 0247889999987542
Q ss_pred CcHHHHHHHhcccCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~~~ 473 (958)
..++|+|||+||..+. ........++|+.||.+|+++|...+. +|+|+||.+||+... .+..|+..
T Consensus 89 ---------~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~ 158 (343)
T 2b69_A 89 ---------YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYW 158 (343)
T ss_dssp ---------CCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCC
T ss_pred ---------hcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCCCCCCccccc
Confidence 2368999999997653 234566788999999999999987774 899999999998543 22333211
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC---cCCCCC
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY---APDIDW 549 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~---~P~~~~ 549 (958)
. ...+..+.+.|+.||+.+|+++.... +.|++++|+|||+|||+...+.. ..++..++..+..-+. +.+.+.
T Consensus 159 ~--~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 2b69_A 159 G--HVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMND--GRVVSNFILQALQGEPLTVYGSGSQ 234 (343)
T ss_dssp C--BCCSSSTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTC--CCHHHHHHHHHHHTCCEEEESSSCC
T ss_pred c--cCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCc--ccHHHHHHHHHHcCCCceEcCCCCe
Confidence 0 01223455789999999999998754 56999999999999999754321 1233444444444332 223345
Q ss_pred cCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccc--cChHHHHHHHhccCCCchhHHHH
Q psy4557 550 YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKT--VPYEKWFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 550 ~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~--v~~~eW~~~~~~~~~~~~~~~~~ 626 (958)
..+|++||++|++++.+.... .+.+||+.++.++++.|+++.+.+. |.+.+. +|.. ..
T Consensus 235 ~~~~v~v~Dva~a~~~~~~~~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~---------~~-------- 295 (343)
T 2b69_A 235 TRAFQYVSDLVNGLVALMNSN--VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA---------QD-------- 295 (343)
T ss_dssp EEECEEHHHHHHHHHHHHTSS--CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC---------TT--------
T ss_pred EEeeEeHHHHHHHHHHHHhcC--CCCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCC---------CC--------
Confidence 689999999999999887654 3679999999999999999998764 654332 2211 00
Q ss_pred hhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 627 RNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
. .....+|+++.++.| |.+.+..-++.|+.+++|+.+
T Consensus 296 ---~----~~~~~~d~~k~~~~l---G~~p~~~l~e~l~~~~~~~~~ 332 (343)
T 2b69_A 296 ---D----PQKRKPDIKKAKLML---GWEPVVPLEEGLNKAIHYFRK 332 (343)
T ss_dssp ---C----CCCCCBCCHHHHHHH---CCCCCSCHHHHHHHHHHHHHH
T ss_pred ---C----CceecCCHHHHHHHc---CCCCCCCHHHHHHHHHHHHHH
Confidence 0 012346777776655 554332225678888888763
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-26 Score=281.88 Aligned_cols=218 Identities=20% Similarity=0.260 Sum_probs=185.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHH-HcCC-eEEEEecC---hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLV-TLGA-KVVAVARR---IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la-~~Ga-~Vi~~~r~---~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.+|+++||||++|||+++|+.|+ ++|+ +|++++|+ .+.++++.+++...+.++.+++||++|.++++++++++.+
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~ 608 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPD 608 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 68999999999999999999999 7999 59999999 5567888888888888899999999999999999999988
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
.+ +||+||||||+.....+.+++.++|++++++|+.|++++++++.|.| +|||+||++|..+.++++.|+++
T Consensus 609 ~~-~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l-------~iV~~SS~ag~~g~~g~~~YaAa 680 (795)
T 3slk_A 609 EH-PLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDV-------ALVLFSSVSGVLGSGGQGNYAAA 680 (795)
T ss_dssp TS-CEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS-------EEEEEEETHHHHTCSSCHHHHHH
T ss_pred hC-CCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC-------EEEEEccHHhcCCCCCCHHHHHH
Confidence 77 99999999999988889999999999999999999999999986655 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
|+ |+++|++++++.||+||+|+||++.|++............. .......+++++....+..++..+....
T Consensus 681 ka----~~~alA~~~~~~Gi~v~sI~pG~v~t~g~~~~~~~~~~~~~-~~~g~~~l~~~e~~~~~~~~l~~~~~~~ 751 (795)
T 3slk_A 681 NS----FLDALAQQRQSRGLPTRSLAWGPWAEHGMASTLREAEQDRL-ARSGLLPISTEEGLSQFDAACGGAHTVV 751 (795)
T ss_dssp HH----HHHHHHHHHHHTTCCEEEEEECCCSCCCHHHHHHHHHHHHH-HHTTBCCCCHHHHHHHHHHHHTSSCSSC
T ss_pred HH----HHHHHHHHHHHcCCeEEEEECCeECcchhhccccHHHHHHH-HhcCCCCCCHHHHHHHHHHHHhCCCcEE
Confidence 95 77778888888999999999999999864321111111111 1233456889999999988887665443
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-25 Score=266.80 Aligned_cols=325 Identities=16% Similarity=0.120 Sum_probs=215.3
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++|||||||||||++|+++|+++++.+|+|++|...... ++ . ...++.++.+|++.+
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~---~~---------~-----~~~~v~~v~~Dl~d~---- 372 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS---RF---------L-----NHPHFHFVEGDISIH---- 372 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTG---GG---------T-----TCTTEEEEECCTTTC----
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhh---hh---------c-----cCCceEEEECCCCCc----
Confidence 45689999999999999999999875679999999754311 00 0 125788999998742
Q ss_pred CcHHHHHHHhcccCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYT 473 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~ 473 (958)
.+.+..+..++|+|||+||..+. ..++..++++|+.||.+++++|...+ ++|+|+||.++|+.... .+.|+.+
T Consensus 373 --~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~~~~~~E~~~ 449 (660)
T 1z7e_A 373 --SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHS 449 (660)
T ss_dssp --HHHHHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCSSSBCTTTC
T ss_pred --HHHHHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCCCcccCCCcc
Confidence 12355566789999999998753 34566788899999999999998887 89999999999986432 2333322
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCC----cChhHHHHHHHHHHHHhCCc---C
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKN----WNLVDLNLYILKAITRLGYA---P 545 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~----~n~~d~~~~l~~~~~~~g~~---P 545 (958)
.........+.+.|+.||+.+|+++..+. +.|++++++|||+|||+...+. ++...++..+++.+..-+.+ .
T Consensus 450 ~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 529 (660)
T 1z7e_A 450 NLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLID 529 (660)
T ss_dssp CEEECCTTCTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEG
T ss_pred ccccCcccCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeC
Confidence 11001111345689999999999998754 4699999999999999976431 11223455555555443322 1
Q ss_pred CCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC-CCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCch
Q psy4557 546 DIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN-PIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEP 621 (958)
Q Consensus 546 ~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~-~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~ 621 (958)
+.+...+|++||++|++++.++.... ..+++||+.++. ++++.|+.+.+.+. |.+...+.+..|... .. ..
T Consensus 530 ~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~---~~--~~ 604 (660)
T 1z7e_A 530 GGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGF---RV--VE 604 (660)
T ss_dssp GGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCE---EE--EC
T ss_pred CCCeEEEEEEHHHHHHHHHHHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccc---cc--hh
Confidence 23456899999999999999886553 357899999986 89999999988653 433211111111100 00 00
Q ss_pred hHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy4557 622 LIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNL 676 (958)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~ 676 (958)
...++...... .....+|++++++.| |.++..--++-|+.+++|+.+.+-
T Consensus 605 ~~~~~~~~~~~--~~~~~~d~~ka~~~L---G~~p~~~l~egl~~~i~~~~~~~~ 654 (660)
T 1z7e_A 605 SSSYYGKGYQD--VEHRKPSIRNAHRCL---DWEPKIDMQETIDETLDFFLRTVD 654 (660)
T ss_dssp THHHHCTTCCC--CSCCCBCCHHHHHHH---CCCCCCCHHHHHHHHHHHHHTTSC
T ss_pred ccccccccccc--hhhcccCHHHHHHhc---CCCccCcHHHHHHHHHHHHHhhcc
Confidence 01111110000 123457888887666 554322224678899998876543
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=232.67 Aligned_cols=221 Identities=12% Similarity=0.018 Sum_probs=166.6
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++|+++|++++ .+|+++.|..... .....++.++.+|++ +
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~-------------------~~~~~~~~~~~~Dl~-------d 57 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKI-------------------KIENEHLKVKKADVS-------S 57 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGC-------------------CCCCTTEEEECCCTT-------C
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccc-------------------hhccCceEEEEecCC-------C
Confidence 579999999999999999999874 7999999964321 112368899999987 3
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDD 479 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~ 479 (958)
.+.+..+.+++|+|||+|+... ....+..+|+.|+.+++++|...++++|+|+||.++++.......++ .
T Consensus 58 ~~~~~~~~~~~d~vi~~a~~~~---~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~-------~ 127 (227)
T 3dhn_A 58 LDEVCEVCKGADAVISAFNPGW---NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLRLMD-------S 127 (227)
T ss_dssp HHHHHHHHTTCSEEEECCCC---------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEEGGG-------T
T ss_pred HHHHHHHhcCCCEEEEeCcCCC---CChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCcccc-------C
Confidence 5778888889999999998642 22236788999999999999998889999999998875432222221 2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCC-CCcCCcccHH
Q psy4557 480 FMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI-DWYLEFTPVD 557 (958)
Q Consensus 480 ~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~-~~~~~~~pVD 557 (958)
+..+.+.|+.||+.+|.+++... +.|++++++|||.+||+......-. ..+..|-. ....+|++++
T Consensus 128 ~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~------------~~~~~~~~~~~~~~~i~~~ 195 (227)
T 3dhn_A 128 GEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRYR------------LGKDDMIVDIVGNSHISVE 195 (227)
T ss_dssp TCSCGGGHHHHHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCCCCCE------------EESSBCCCCTTSCCEEEHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhccCccEEEEeCCcccCCCcccccee------------ecCCCcccCCCCCcEEeHH
Confidence 22456789999999999888766 6799999999999999875322110 01111111 1237899999
Q ss_pred HHHHHHHHHhcCcCCCCceEEecCCCCCCHHH
Q psy4557 558 FLTKSLVQLTTNVNNANKIYNFINTNPIHIKT 589 (958)
Q Consensus 558 ~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~ 589 (958)
++|++++.+..++...+++||+++|++.+|++
T Consensus 196 Dva~ai~~~l~~~~~~g~~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 196 DYAAAMIDELEHPKHHQERFTIGYLEHHHHHH 227 (227)
T ss_dssp HHHHHHHHHHHSCCCCSEEEEEECCSCCC---
T ss_pred HHHHHHHHHHhCccccCcEEEEEeehhcccCC
Confidence 99999999999888889999999999999863
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=243.70 Aligned_cols=269 Identities=15% Similarity=0.160 Sum_probs=191.1
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||| +||||++|+++|+++ +.+|+++.|.... ...++.++.+|++.+
T Consensus 3 ~~~ilVtG-aG~iG~~l~~~L~~~-g~~V~~~~r~~~~----------------------~~~~~~~~~~Dl~d~----- 53 (286)
T 3gpi_A 3 LSKILIAG-CGDLGLELARRLTAQ-GHEVTGLRRSAQP----------------------MPAGVQTLIADVTRP----- 53 (286)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEECTTSC----------------------CCTTCCEEECCTTCG-----
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCccc----------------------cccCCceEEccCCCh-----
Confidence 35899999 599999999999987 4689999986432 125788899998753
Q ss_pred cHHHHHHHhcc-cCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCC-CcccccccC
Q psy4557 399 NQDEYVSLSYE-IDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDYTVAD 476 (958)
Q Consensus 399 ~~~~~~~l~~~-vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~-~~e~~~~~~ 476 (958)
+.+..+... +|+|||+||... .....+..+|+.||.+++++|.+.++++|+|+||.+|||..... +.|+
T Consensus 54 --~~~~~~~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~----- 124 (286)
T 3gpi_A 54 --DTLASIVHLRPEILVYCVAASE--YSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDED----- 124 (286)
T ss_dssp --GGCTTGGGGCCSEEEECHHHHH--HC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTT-----
T ss_pred --HHHHHhhcCCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCC-----
Confidence 333334445 999999999753 34456778999999999999998888999999999999865322 2222
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccH
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPV 556 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pV 556 (958)
.+..+.+.|+.||+.+|++ ... ++++|+||+++||+... .++..+.+ ... ..+.+...+|++|
T Consensus 125 --~~~~p~~~Y~~sK~~~E~~-~~~----~~~~ilR~~~v~G~~~~------~~~~~~~~---~~~-~~~~~~~~~~i~v 187 (286)
T 3gpi_A 125 --TPPIAKDFSGKRMLEAEAL-LAA----YSSTILRFSGIYGPGRL------RMIRQAQT---PEQ-WPARNAWTNRIHR 187 (286)
T ss_dssp --SCCCCCSHHHHHHHHHHHH-GGG----SSEEEEEECEEEBTTBC------HHHHHTTC---GGG-SCSSBCEECEEEH
T ss_pred --CCCCCCChhhHHHHHHHHH-Hhc----CCeEEEecccccCCCch------hHHHHHHh---ccc-CCCcCceeEEEEH
Confidence 2335678999999999999 443 99999999999998743 23333333 111 1234466899999
Q ss_pred HHHHHHHHHHhcCc--CCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHHHHhhccccc
Q psy4557 557 DFLTKSLVQLTTNV--NNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQILRNKGKEY 633 (958)
Q Consensus 557 D~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~~~~~~ 633 (958)
|++|++++.+...+ ...+.+||+.++.++++.|+++.+.+. |.+....... .
T Consensus 188 ~Dva~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~---------~---------------- 242 (286)
T 3gpi_A 188 DDGAAFIAYLIQQRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP---------P---------------- 242 (286)
T ss_dssp HHHHHHHHHHHHHHTTSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC---------C----------------
T ss_pred HHHHHHHHHHHhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc---------c----------------
Confidence 99999999988764 456899999999999999999998764 5543222110 0
Q ss_pred cccCcccccHHHHHHHhhCCCCCC--CCCHHHHHHHHHHHH
Q psy4557 634 LTVNNSYCQRNTLALLKSCDETYP--ETNDHTVRQFLDNLR 672 (958)
Q Consensus 634 ~~~~~~~~~~~t~~~L~~~~~~~p--~~~~~~~~~~~~~~~ 672 (958)
......+|+++.+ .+|.++. .+ ++-|+.+++++.
T Consensus 243 ~~~~~~~d~~k~~----~lG~~p~~~~l-~e~l~~~~~~~~ 278 (286)
T 3gpi_A 243 VQGNKKLSNARLL----ASGYQLIYPDY-VSGYGALLAAMR 278 (286)
T ss_dssp BCSSCEECCHHHH----HTTCCCSSCSH-HHHHHHHHHHHT
T ss_pred cCCCeEeeHHHHH----HcCCCCcCCcH-HHHHHHHHHHHh
Confidence 0122346777663 4566443 33 457888888764
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-25 Score=240.81 Aligned_cols=271 Identities=16% Similarity=0.166 Sum_probs=191.3
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++|||||||||||++|+++|+++ +.+|++++|. .+|++
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~---------------------------------~~Dl~------ 50 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGK-NVEVIPTDVQ---------------------------------DLDIT------ 50 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTS-SEEEEEECTT---------------------------------TCCTT------
T ss_pred ccceEEEECCCChHHHHHHHHHHhC-CCeEEeccCc---------------------------------cCCCC------
Confidence 3568999999999999999999976 4789998873 14544
Q ss_pred CcHHHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-CCCccc
Q psy4557 398 KNQDEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-ENFQED 471 (958)
Q Consensus 398 ~~~~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-~~~~e~ 471 (958)
+.+.+..+.. ++|+|||+|+..+.. ..+..++.+|+.||.+++++|...+. +|+|+||.++|+... .++.|+
T Consensus 51 -d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~~~~~~E~ 128 (292)
T 1vl0_A 51 -NVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEF 128 (292)
T ss_dssp -CHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTT
T ss_pred -CHHHHHHHHHhcCCCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCCCCCCCCC
Confidence 3455666665 799999999986542 35567788999999999999988776 999999999998643 223332
Q ss_pred ccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCC-CCCc
Q psy4557 472 YTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPD-IDWY 550 (958)
Q Consensus 472 ~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~-~~~~ 550 (958)
.+..+.+.|+.||+.+|++++... .+++++||+.|||+ .+ .++..+++....-..++- .+..
T Consensus 129 -------~~~~~~~~Y~~sK~~~E~~~~~~~---~~~~~lR~~~v~G~-~~------~~~~~~~~~~~~~~~~~~~~~~~ 191 (292)
T 1vl0_A 129 -------DEVNPQSAYGKTKLEGENFVKALN---PKYYIVRTAWLYGD-GN------NFVKTMINLGKTHDELKVVHDQV 191 (292)
T ss_dssp -------SCCCCCSHHHHHHHHHHHHHHHHC---SSEEEEEECSEESS-SS------CHHHHHHHHHHHCSEEEEESSCE
T ss_pred -------CCCCCccHHHHHHHHHHHHHHhhC---CCeEEEeeeeeeCC-Cc------ChHHHHHHHHhcCCcEEeecCee
Confidence 222456789999999999997753 47999999999998 32 233444444333221111 1345
Q ss_pred CCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccc--cChHHHHHHHhccCCCchhHHHHh
Q psy4557 551 LEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKT--VPYEKWFHKLNKRELSEPLIQILR 627 (958)
Q Consensus 551 ~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~--v~~~eW~~~~~~~~~~~~~~~~~~ 627 (958)
.++++|+++|++++.++... .+.+||+.++.++++.|+++.+.+. |.+.+. +|...+. ...
T Consensus 192 ~~~i~v~Dva~~~~~~~~~~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~----~~~---------- 255 (292)
T 1vl0_A 192 GTPTSTVDLARVVLKVIDEK--NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFP----RPA---------- 255 (292)
T ss_dssp ECCEEHHHHHHHHHHHHHHT--CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSC----CSS----------
T ss_pred eCCccHHHHHHHHHHHHhcC--CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccC----ccc----------
Confidence 78999999999999988664 5789999999999999999998764 665433 3322210 000
Q ss_pred hccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHH
Q psy4557 628 NKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLR 672 (958)
Q Consensus 628 ~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~ 672 (958)
.. .....+|+++.++. +|.+++++ ++.|+.+++++.
T Consensus 256 -~~----~~~~~~d~~k~~~~---lG~~p~~~-~~~l~~~~~~~~ 291 (292)
T 1vl0_A 256 -KR----PKYSVLRNYMLELT---TGDITREW-KESLKEYIDLLQ 291 (292)
T ss_dssp -CC----CSBCCBCCHHHHHT---TCCCCCBH-HHHHHHHHHHHT
T ss_pred -CC----CccccccHHHHHHH---cCCCCCCH-HHHHHHHHHHhc
Confidence 00 11244677766544 57766533 467888888764
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=241.48 Aligned_cols=207 Identities=23% Similarity=0.276 Sum_probs=163.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||++|||+++|++|+++|++|++++|+.++++. .+.+|+++.++++++++++ .+++|+
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------------~~~~D~~~~~~~~~~~~~~---~~~~d~ 65 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA-------------DLSTPGGRETAVAAVLDRC---GGVLDG 65 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------------CTTSHHHHHHHHHHHHHHH---TTCCSE
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc-------------cccCCcccHHHHHHHHHHc---CCCccE
Confidence 689999999999999999999999999999998754321 1568999999988887754 478999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC----------------
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF---------------- 860 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~---------------- 860 (958)
||||||.... .+.|++++++|+.|++.+++++++.|.+ ++.++||++||.++..+.
T Consensus 66 vi~~Ag~~~~-------~~~~~~~~~~N~~~~~~l~~~~~~~~~~-~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~ 137 (255)
T 2dkn_A 66 LVCCAGVGVT-------AANSGLVVAVNYFGVSALLDGLAEALSR-GQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEA 137 (255)
T ss_dssp EEECCCCCTT-------SSCHHHHHHHHTHHHHHHHHHHHHHHHT-SSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHH
T ss_pred EEECCCCCCc-------chhHHHHHHHHhHHHHHHHHHHHHHhhh-cCCceEEEEeccccccccccccchhhhhcccchh
Confidence 9999998642 1238999999999999999999999973 345899999999887654
Q ss_pred ----------CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----CChhhhhhhccccCCCCCC
Q psy4557 861 ----------AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----TDRDVVDKYDISKAVPVLT 926 (958)
Q Consensus 861 ----------~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~~~~~~~~~~~~~~~~~~~ 926 (958)
++...|++||++++.+++.++.++++.||+|++|+||++.|++.... ........+. ....++..
T Consensus 138 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 216 (255)
T 2dkn_A 138 RAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKADPRYGESTRRFV-APLGRGSE 216 (255)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHHHHCTTTHHHHHSCC-CTTSSCBC
T ss_pred hhhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhcccchhhHHHHHHHH-HHhcCCCC
Confidence 56678999999999999999999999999999999999999975321 0111111110 02235789
Q ss_pred HHHHHHHHHHHhcCCCCccccce
Q psy4557 927 TKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 927 p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
++|+|+++++++..+ ..++++.
T Consensus 217 ~~dva~~~~~l~~~~-~~~~~G~ 238 (255)
T 2dkn_A 217 PREVAEAIAFLLGPQ-ASFIHGS 238 (255)
T ss_dssp HHHHHHHHHHHHSGG-GTTCCSC
T ss_pred HHHHHHHHHHHhCCC-cccceee
Confidence 999999999988654 2344443
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=240.64 Aligned_cols=318 Identities=13% Similarity=0.081 Sum_probs=207.2
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+++|||||||||||++|+++|+++ +.+|+++.|....... .++.. .. ...++.++.+|++.
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~-~~~~~----~~-------~~~~~~~~~~Dl~d------ 63 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEK-GYEVYGADRRSGEFAS-WRLKE----LG-------IENDVKIIHMDLLE------ 63 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCCSTTTT-HHHHH----TT-------CTTTEEECCCCTTC------
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEECCCccccc-ccHhh----cc-------ccCceeEEECCCCC------
Confidence 357999999999999999999986 4799999997653211 22211 10 02478889999873
Q ss_pred cHHHHHHHhcc--cCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCC-ccEEEEecccccCCCCC-CCccc
Q psy4557 399 NQDEYVSLSYE--IDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKI-KSFHYVSTDSIYPSTSE-NFQED 471 (958)
Q Consensus 399 ~~~~~~~l~~~--vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~-k~~~~vST~~v~~~~~~-~~~e~ 471 (958)
.+.+..+... +|+|||+||.... ...+..+.++|+.||.++++.|...+. ++|+|+||.+|||.... ++.|+
T Consensus 64 -~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~ 142 (345)
T 2z1m_A 64 -FSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEK 142 (345)
T ss_dssp -HHHHHHHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTT
T ss_pred -HHHHHHHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCcc
Confidence 4566666654 6999999997653 234667788999999999999987665 79999999999986432 22222
Q ss_pred ccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc-----C
Q psy4557 472 YTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA-----P 545 (958)
Q Consensus 472 ~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~-----P 545 (958)
.+..+.+.|+.||+.+|++++... +.|+++++.|+++++|+..... .....+..+++... .|.. .
T Consensus 143 -------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 213 (345)
T 2z1m_A 143 -------TPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIE-FVTRKITYSLARIK-YGLQDKLVLG 213 (345)
T ss_dssp -------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTT-SHHHHHHHHHHHHH-TTSCSCEEES
T ss_pred -------CCCCCCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCc-chhHHHHHHHHHHH-cCCCCeeeeC
Confidence 222456789999999999998754 4599999999999999874322 11222233333222 2321 1
Q ss_pred CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCcccc--ChHHHHHHHhccCCCchh
Q psy4557 546 DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTV--PYEKWFHKLNKRELSEPL 622 (958)
Q Consensus 546 ~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v--~~~eW~~~~~~~~~~~~~ 622 (958)
+.+...+|++||++|++++.++.... +.+||+.++.++++.|+++.+.+. |.+.... +...|.-. .......
T Consensus 214 ~~~~~~~~~~v~Dva~a~~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~---~~~~~~~ 288 (345)
T 2z1m_A 214 NLNAKRDWGYAPEYVEAMWLMMQQPE--PDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGID---RNTGKVI 288 (345)
T ss_dssp CTTCEECCEEHHHHHHHHHHHHTSSS--CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEE---TTTCCEE
T ss_pred CCCceeeeEEHHHHHHHHHHHHhCCC--CceEEEeCCCCccHHHHHHHHHHHhCCCcccccccccccccc---ccccccc
Confidence 23345789999999999999886543 478999999999999999998764 6653311 22223110 0000000
Q ss_pred HHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 623 IQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
..+..............+|+++.++.| |.+.+.-=++.|+.+++|+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~d~~k~~~~l---G~~p~~~~~~~l~~~~~~~~~ 336 (345)
T 2z1m_A 289 VEVSEEFFRPAEVDILVGNPEKAMKKL---GWKPRTTFDELVEIMMEADLK 336 (345)
T ss_dssp EEECGGGSCSSCCCBCCBCCHHHHHHH---CCCCCSCHHHHHHHHHHHHHH
T ss_pred cccCcccCCCCCcceeecCHHHHHHHc---CCcccCCHHHHHHHHHHHHHH
Confidence 000000000000122346788777655 555433234678888888763
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=235.75 Aligned_cols=301 Identities=18% Similarity=0.182 Sum_probs=198.1
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCCh-hhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPN-KTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~-~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+|||||||||||++|+++|+++ +.+|+++.|.... ....+++... ...++.++.+|++.
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Dl~~------- 61 (338)
T 1udb_A 2 RVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERL------------GGKHPTFVEGDIRN------- 61 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTTHHHHHHHH------------HTSCCEEEECCTTC-------
T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEEEEecCCCcchhHHHHHHhh------------cCCcceEEEccCCC-------
Confidence 5899999999999999999986 4688888764321 2222222211 02467888999874
Q ss_pred HHHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccc
Q psy4557 400 QDEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYT 473 (958)
Q Consensus 400 ~~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~ 473 (958)
.+.+..+.. .+|+|||+||..... .....++.+|+.||.++++.|.+.++++|+|+||.++|+.... +..|+.
T Consensus 62 ~~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~- 140 (338)
T 1udb_A 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESF- 140 (338)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS-
T ss_pred HHHHHHHhhccCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCccc-
Confidence 345555554 599999999975432 2345677899999999999998777889999999999985421 222221
Q ss_pred ccCcCCCCC-CCCChhHHHHHHHHHHHHHh-hC-CCCEEEEecCceeccCCCCCcC------hhHHHHHHHHHHHHhCC-
Q psy4557 474 VADFDDFMT-TTSGYGQSKIVSEYLVLNAG-QM-GLPVSIVRCGNIGGSLEFKNWN------LVDLNLYILKAITRLGY- 543 (958)
Q Consensus 474 ~~~~~~~~~-~~~gY~~SK~~aE~lv~~a~-~~-glp~~I~R~g~i~G~~~~g~~n------~~d~~~~l~~~~~~~g~- 543 (958)
+.. +.+.|+.||+.+|++++... +. |++++|+||+++||+...+.+. ...++..+.+.....+.
T Consensus 141 ------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 214 (338)
T 1udb_A 141 ------PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDS 214 (338)
T ss_dssp ------CCCCCSSHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSC
T ss_pred ------CCCCCCChHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCC
Confidence 111 25789999999999998754 34 8999999999999985433211 12334444433321111
Q ss_pred ---------cCCCCCcCCcccHHHHHHHHHHHhcCcC-CC-CceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHH
Q psy4557 544 ---------APDIDWYLEFTPVDFLTKSLVQLTTNVN-NA-NKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFH 611 (958)
Q Consensus 544 ---------~P~~~~~~~~~pVD~va~aiv~l~~~~~-~~-~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~ 611 (958)
.|+.....+|++||++|++++.+..... .. +++||++++.++++.|+++.+.+. |.++......
T Consensus 215 ~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~---- 290 (338)
T 1udb_A 215 LAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAP---- 290 (338)
T ss_dssp EEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEEC----
T ss_pred cEEecCcccCCCCceeeeeEEHHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCC----
Confidence 1223355799999999999998775431 22 379999999999999999988754 6543211000
Q ss_pred HHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHH
Q psy4557 612 KLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRN 673 (958)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 673 (958)
... ... ....+|+++.++.| |.++..-=++.|+.+++|+.+
T Consensus 291 ---~~~-----------~~~----~~~~~d~~k~~~~l---G~~p~~~l~~~l~~~~~w~~~ 331 (338)
T 1udb_A 291 ---RRE-----------GDL----PAYWADASKADREL---NWRVTRTLDEMAQDTWHWQSR 331 (338)
T ss_dssp ---CCT-----------TCC----SBCCBCCHHHHHHH---CCCCCCCHHHHHHHHHHHHHH
T ss_pred ---CCC-----------Cch----hhhhcCHHHHHHHc---CCCcCCCHHHHHHHHHHHHHh
Confidence 000 000 12346777776554 665432224568888888763
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=241.32 Aligned_cols=310 Identities=19% Similarity=0.212 Sum_probs=191.5
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEecc-CCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVR-ETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR-~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
++|||||||||||+||+++|++++ .+|++++| ..........+.+ + .....++.++.+|++.
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~------~----~~~~~~~~~~~~Dl~d------ 64 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENG-YSVNTTIRADPERKRDVSFLTN------L----PGASEKLHFFNADLSN------ 64 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCCC----CCCHHHHT------S----TTHHHHEEECCCCTTC------
T ss_pred CEEEEECChhHHHHHHHHHHHHCC-CEEEEEEeCCccchhHHHHHHh------h----hccCCceEEEecCCCC------
Confidence 579999999999999999999764 68999998 4321000111110 0 0011367888999874
Q ss_pred cHHHHHHHhcccCEEEEcccccCccc--ChHHHHhhhHHHHHHHHHhhccC-CCccEEEEeccccc-CCCC--CCCcccc
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLIL--PYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSIY-PSTS--ENFQEDY 472 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~~--~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v~-~~~~--~~~~e~~ 472 (958)
.+.+..+.+++|+|||+|+.+++.. ++..+.++||.||.++++.|... ++++|+|+||.+++ +... ..+.|+.
T Consensus 65 -~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~ 143 (322)
T 2p4h_X 65 -PDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESD 143 (322)
T ss_dssp -GGGGHHHHTTCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTC
T ss_pred -HHHHHHHHcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCcc
Confidence 3567777789999999998764422 23457889999999999999876 67899999998754 3221 1122221
Q ss_pred ccc-CcCCCCCCCC-ChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCC-
Q psy4557 473 TVA-DFDDFMTTTS-GYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDID- 548 (958)
Q Consensus 473 ~~~-~~~~~~~~~~-gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~- 548 (958)
... ....+..+.+ .|+.||+.+|+++..+. +.|++++++|||+|||+...+... ..+..+.+. ..|..+...
T Consensus 144 ~~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~--~~~~~~~~~--~~g~~~~~~~ 219 (322)
T 2p4h_X 144 WSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLP--DSIEKALVL--VLGKKEQIGV 219 (322)
T ss_dssp CCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCC--HHHHHHTHH--HHSCGGGCCE
T ss_pred ccchhhhcccCcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCC--chHHHHHHH--HhCCCccCcC
Confidence 000 0000001222 69999999999998754 479999999999999997543322 112111111 123211111
Q ss_pred CcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccCCCchhHHHHhh
Q psy4557 549 WYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQILRN 628 (958)
Q Consensus 549 ~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~ 628 (958)
..++|++||++|++++.++..+...+ .|| +++.++++.|+.+.+.+.- +-..+|... ... .
T Consensus 220 ~~~~~i~v~Dva~a~~~~~~~~~~~g-~~~-~~~~~~s~~e~~~~i~~~~-~~~~~~~~~---~~~--~----------- 280 (322)
T 2p4h_X 220 TRFHMVHVDDVARAHIYLLENSVPGG-RYN-CSPFIVPIEEMSQLLSAKY-PEYQILTVD---ELK--E----------- 280 (322)
T ss_dssp EEEEEEEHHHHHHHHHHHHHSCCCCE-EEE-CCCEEEEHHHHHHHHHHHC-TTSCCCCTT---TTT--T-----------
T ss_pred CCcCEEEHHHHHHHHHHHhhCcCCCC-CEE-EcCCCCCHHHHHHHHHHhC-CCCCCCCCc---ccc--C-----------
Confidence 23489999999999999886543334 588 5678899999999987531 111122110 000 0
Q ss_pred ccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy4557 629 KGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLL 677 (958)
Q Consensus 629 ~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l 677 (958)
.... ....+|+++. +.+|.++..--++-|+.+++|+.+.|++
T Consensus 281 -~~~~--~~~~~d~~k~----~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 322 (322)
T 2p4h_X 281 -IKGA--RLPDLNTKKL----VDAGFDFKYTIEDMFDDAIQCCKEKGYL 322 (322)
T ss_dssp -CCCE--ECCEECCHHH----HHTTCCCCCCHHHHHHHHHHHHHHHTCC
T ss_pred -CCCC--cceecccHHH----HHhCCccCCCHHHHHHHHHHHHHhcCCC
Confidence 0000 1234566654 4467765422356788999999887764
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-24 Score=242.20 Aligned_cols=255 Identities=17% Similarity=0.128 Sum_probs=180.7
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccC-ceEEecccCCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD-RLILVKSDLSLEMLGLK 398 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~-ri~~v~gDl~~~~lGL~ 398 (958)
++|||||||||||++|+++|++++ .+|++++|....... .++... ......... ++.++.+|++.
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~r~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~Dl~d------ 94 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNT-QRINHI------YIDPHNVNKALMKLHYADLTD------ 94 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCC-TTTTTT------C--------CCEEEEECCTTC------
T ss_pred CeEEEEcCCchHHHHHHHHHHHCC-CEEEEEecCCccccc-hhhhhh------hhccccccccceEEEECCCCC------
Confidence 589999999999999999999864 789999997543100 001000 000000012 78889999873
Q ss_pred cHHHHHHHhcc--cCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCc-----cEEEEecccccCCCCCCC
Q psy4557 399 NQDEYVSLSYE--IDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIK-----SFHYVSTDSIYPSTSENF 468 (958)
Q Consensus 399 ~~~~~~~l~~~--vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k-----~~~~vST~~v~~~~~~~~ 468 (958)
.+.+..+... +|+|||+||..... ..+....++|+.||.+|+++|...+++ +|+|+||.+|||....++
T Consensus 95 -~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~~~ 173 (381)
T 1n7h_A 95 -ASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQ 173 (381)
T ss_dssp -HHHHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSB
T ss_pred -HHHHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCCCC
Confidence 4566666654 69999999987642 345667889999999999999876555 999999999998653333
Q ss_pred cccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC----
Q psy4557 469 QEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY---- 543 (958)
Q Consensus 469 ~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~---- 543 (958)
.|+ .+..+.+.|+.||+.+|+++.... +.|+++++.|++++||+.....+ ...++..+++.... |.
T Consensus 174 ~E~-------~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~-~~~~~~~~~~~~~~-g~~~~~ 244 (381)
T 1n7h_A 174 SET-------TPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENF-VTRKITRALGRIKV-GLQTKL 244 (381)
T ss_dssp CTT-------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTS-HHHHHHHHHHHHHH-TSCCCE
T ss_pred CCC-------CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcc-hhHHHHHHHHHHHc-CCCCeE
Confidence 332 223456789999999999998765 45999999999999998753322 12233334433332 32
Q ss_pred -cCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCC
Q psy4557 544 -APDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYN 600 (958)
Q Consensus 544 -~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~ 600 (958)
..+.+...+|++||++|++++.++.... +.+||+.++.++++.|+++.+.+. |.+
T Consensus 245 ~~g~~~~~~~~v~v~Dva~a~~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~ 301 (381)
T 1n7h_A 245 FLGNLQASRDWGFAGDYVEAMWLMLQQEK--PDDYVVATEEGHTVEEFLDVSFGYLGLN 301 (381)
T ss_dssp EESCTTCEEECEEHHHHHHHHHHHHTSSS--CCEEEECCSCEEEHHHHHHHHHHHTTCC
T ss_pred EeCCCCceeeeEEHHHHHHHHHHHHhCCC--CCeEEeeCCCCCcHHHHHHHHHHHcCCC
Confidence 1223456789999999999999887653 479999999999999999998764 554
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=242.70 Aligned_cols=315 Identities=17% Similarity=0.170 Sum_probs=196.8
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+++|||||||||||+||+++|+++ +.+|++++|..+.......+. . + .....+++++.+|++.+
T Consensus 5 ~~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~----~--~----~~~~~~~~~~~~Dl~d~----- 68 (337)
T 2c29_D 5 SETVCVTGASGFIGSWLVMRLLER-GYTVRATVRDPTNVKKVKHLL----D--L----PKAETHLTLWKADLADE----- 68 (337)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCTTCHHHHHHHH----T--S----TTHHHHEEEEECCTTST-----
T ss_pred CCEEEEECCchHHHHHHHHHHHHC-CCEEEEEECCcchhHHHHHHH----h--c----ccCCCeEEEEEcCCCCH-----
Confidence 468999999999999999999986 468999898654321111111 0 0 00113688899998753
Q ss_pred cHHHHHHHhcccCEEEEcccccCccc--ChHHHHhhhHHHHHHHHHhhccCC-CccEEEEeccc-ccCCCCC--CCcccc
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLIL--PYNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDS-IYPSTSE--NFQEDY 472 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~~--~~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~-v~~~~~~--~~~e~~ 472 (958)
+.+..+..++|+|||+||...+.. +...+.++||.||.+|++.|...+ +++|+|+||.+ +|+.... ...|+.
T Consensus 69 --~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~ 146 (337)
T 2c29_D 69 --GSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESC 146 (337)
T ss_dssp --TTTHHHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTC
T ss_pred --HHHHHHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCccc
Confidence 345566778999999999775432 233578899999999999998765 78999999987 4443211 122221
Q ss_pred ccc-CcC-CCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCC--
Q psy4557 473 TVA-DFD-DFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI-- 547 (958)
Q Consensus 473 ~~~-~~~-~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~-- 547 (958)
... ... ....+.+.|+.||+.+|+++.... +.|++++++|||+|||+...+.... .+...+. ...|..+..
T Consensus 147 ~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~--~~~~~~~--~~~g~~~~~~~ 222 (337)
T 2c29_D 147 WSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPP--SLITALS--PITGNEAHYSI 222 (337)
T ss_dssp CCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCH--HHHHHTH--HHHTCGGGHHH
T ss_pred CCchhhhcccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCc--hHHHHHH--HHcCCCccccc
Confidence 000 000 000123479999999999997754 4699999999999999975443221 1111110 111211100
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccCCCchhHHHHh
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKRELSEPLIQILR 627 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~ 627 (958)
.....|++||++|++++.++..... +..|++.+ ..+++.|+.+.+.+.-..+ .+|.. | . .
T Consensus 223 ~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~~~~-~~~s~~e~~~~i~~~~~~~-~~~~~-~----~--~---------- 282 (337)
T 2c29_D 223 IRQGQFVHLDDLCNAHIYLFENPKA-EGRYICSS-HDCIILDLAKMLREKYPEY-NIPTE-F----K--G---------- 282 (337)
T ss_dssp HTEEEEEEHHHHHHHHHHHHHCTTC-CEEEEECC-EEEEHHHHHHHHHHHCTTS-CCCSC-C----T--T----------
T ss_pred cCCCCEEEHHHHHHHHHHHhcCccc-CceEEEeC-CCCCHHHHHHHHHHHCCCc-cCCCC-C----C--c----------
Confidence 0123499999999999998865433 44687655 5689999999987641111 12210 0 0 0
Q ss_pred hccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q psy4557 628 NKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLPNVPL 682 (958)
Q Consensus 628 ~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~~~~~ 682 (958)
... ......+|+++. +.+|.++.-.-++-|+.+++|+.+.|++++|..
T Consensus 283 --~~~-~~~~~~~d~~k~----~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~~~~ 330 (337)
T 2c29_D 283 --VDE-NLKSVCFSSKKL----TDLGFEFKYSLEDMFTGAVDTCRAKGLLPPSHE 330 (337)
T ss_dssp --CCT-TCCCCEECCHHH----HHHTCCCCCCHHHHHHHHHHHHHHTTSSCSCC-
T ss_pred --ccC-CCccccccHHHH----HHcCCCcCCCHHHHHHHHHHHHHHcCCCCcccc
Confidence 000 011234566655 345776543346679999999999999965543
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=258.04 Aligned_cols=306 Identities=15% Similarity=0.125 Sum_probs=206.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChh-hHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNK-TLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~-~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
+.++|||||||||||++|+++|++++ .+|+++.|..... ...+++... ...++.++.+|++.
T Consensus 10 ~~~~ilVTGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~------------~~~~v~~v~~Dl~d---- 72 (699)
T 1z45_A 10 TSKIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVL------------TKHHIPFYEVDLCD---- 72 (699)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHHHHHH------------HTSCCCEEECCTTC----
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCcchHHHHHHHhhc------------cCCceEEEEcCCCC----
Confidence 35689999999999999999999864 7899999865432 222222211 02467888999874
Q ss_pred CCcHHHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC-----C
Q psy4557 397 LKNQDEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS-----E 466 (958)
Q Consensus 397 L~~~~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~-----~ 466 (958)
.+.+..+.. .+|+|||+||..... ....+++++|+.||.+|+++|.+.++++|+|+||.++|+... .
T Consensus 73 ---~~~l~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~ 149 (699)
T 1z45_A 73 ---RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMI 149 (699)
T ss_dssp ---HHHHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCC
T ss_pred ---HHHHHHHHHhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccC
Confidence 356666666 799999999986532 233467889999999999999887888999999999998532 1
Q ss_pred CCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-h--CCCCEEEEecCceeccCCCCCcCh------hHHHHHHHHH
Q psy4557 467 NFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-Q--MGLPVSIVRCGNIGGSLEFKNWNL------VDLNLYILKA 537 (958)
Q Consensus 467 ~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~--~glp~~I~R~g~i~G~~~~g~~n~------~d~~~~l~~~ 537 (958)
+..|+ .+..+.+.|+.||+.+|+++..+. + .|++++|+||+++||+...+.+.. ..++..+.+.
T Consensus 150 ~~~E~-------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~ 222 (699)
T 1z45_A 150 PIPEE-------CPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQV 222 (699)
T ss_dssp SBCTT-------SCCCCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHH
T ss_pred Ccccc-------CCCCCCChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHH
Confidence 12221 223456799999999999998754 3 699999999999999876554321 2234433333
Q ss_pred HHHhC-CcC---------CCCCcCCcccHHHHHHHHHHHhcCc------CCCCceEEecCCCCCCHHHHHHHHHHc-CCC
Q psy4557 538 ITRLG-YAP---------DIDWYLEFTPVDFLTKSLVQLTTNV------NNANKIYNFINTNPIHIKTLVSVLNTY-GYN 600 (958)
Q Consensus 538 ~~~~g-~~P---------~~~~~~~~~pVD~va~aiv~l~~~~------~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~ 600 (958)
....+ .++ +....++|++||++|++++.++... ...+.+||++++.++++.|+++.+.+. |.+
T Consensus 223 ~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~ 302 (699)
T 1z45_A 223 AVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGID 302 (699)
T ss_dssp HTTSSSCCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCC
T ss_pred HhcCCCceEEeCCcccCCCCCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCC
Confidence 22111 111 2335689999999999999887532 223579999999999999999988754 654
Q ss_pred ccccChHHHHHHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCC
Q psy4557 601 IKTVPYEKWFHKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSN 675 (958)
Q Consensus 601 ~~~v~~~eW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g 675 (958)
+... +.... . .. .....+|+++.++. +|.+...-=++-|+++++|+.+.+
T Consensus 303 ~~~~----~~~~~---~-----------~~----~~~~~~d~~ka~~~---LG~~p~~~l~egl~~~~~w~~~~~ 352 (699)
T 1z45_A 303 LPYK----VTGRR---A-----------GD----VLNLTAKPDRAKRE---LKWQTELQVEDSCKDLWKWTTENP 352 (699)
T ss_dssp CCC-------------------------------CCCCCBCCHHHHHH---TCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred CCce----ecCCC---C-----------Cc----cccccCCHHHHHHh---cCCCCCCCHHHHHHHHHHHHHhCC
Confidence 3321 10000 0 00 01234677766544 465533223467899999987643
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-24 Score=239.10 Aligned_cols=258 Identities=12% Similarity=0.053 Sum_probs=177.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEe-cccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILV-KSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v-~gDl~~~~lG 396 (958)
++++|||||||||||+||+++|+++ +.+|++++|.... .+++.+.+... ...++.++ .+|++.+
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~---~~~~~~~~~~~--------~~~~~~~~~~~D~~d~--- 74 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEH-GYKVRGTARSASK---LANLQKRWDAK--------YPGRFETAVVEDMLKQ--- 74 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHH---HHHHHHHHHHH--------STTTEEEEECSCTTST---
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCccc---HHHHHHHhhcc--------CCCceEEEEecCCcCh---
Confidence 4578999999999999999999987 4789999985322 22232222110 12478888 8999753
Q ss_pred CCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhcc-CCCccEEEEecccccCCCC-----CCCcc
Q psy4557 397 LKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFL-NKIKSFHYVSTDSIYPSTS-----ENFQE 470 (958)
Q Consensus 397 L~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~-~~~k~~~~vST~~v~~~~~-----~~~~e 470 (958)
+.+..+.+++|+|||+||..+....+..+.++|+.||.+++++|.. .++++|+|+||.++|+... .++.|
T Consensus 75 ----~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E 150 (342)
T 1y1p_A 75 ----GAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDE 150 (342)
T ss_dssp ----TTTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECT
T ss_pred ----HHHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCc
Confidence 3344455689999999998876666777889999999999999974 5678999999999985321 12233
Q ss_pred ccccc---------CcCCCCCCCCChhHHHHHHHHHHHHHhh---CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHH
Q psy4557 471 DYTVA---------DFDDFMTTTSGYGQSKIVSEYLVLNAGQ---MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI 538 (958)
Q Consensus 471 ~~~~~---------~~~~~~~~~~gY~~SK~~aE~lv~~a~~---~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~ 538 (958)
+.... ....+..+.+.|+.||+.+|++++...+ .|++++++|||++||+........ ..+..+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~-~~~~~~~~~~ 229 (342)
T 1y1p_A 151 KSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQS-GSTSGWMMSL 229 (342)
T ss_dssp TCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCC-CHHHHHHHHH
T ss_pred cccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCC-ccHHHHHHHH
Confidence 21000 0000123446899999999999987543 278999999999999876433211 1334444433
Q ss_pred HHhCC---cCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 539 TRLGY---APDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 539 ~~~g~---~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
..-.. .++. ...+|++|+++|++++.++......+..| +.+..++++.|+.+.+.+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~v~v~Dva~a~~~~~~~~~~~g~~~-~~~g~~~s~~e~~~~i~~~ 289 (342)
T 1y1p_A 230 FNGEVSPALALM-PPQYYVSAVDIGLLHLGCLVLPQIERRRV-YGTAGTFDWNTVLATFRKL 289 (342)
T ss_dssp HTTCCCHHHHTC-CSEEEEEHHHHHHHHHHHHHCTTCCSCEE-EECCEEECHHHHHHHHHHH
T ss_pred HcCCCccccccC-CcCCEeEHHHHHHHHHHHHcCcccCCceE-EEeCCCCCHHHHHHHHHHH
Confidence 32111 1111 35689999999999998886544344444 3455789999999998764
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=237.77 Aligned_cols=257 Identities=17% Similarity=0.105 Sum_probs=182.0
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++|+++|++++ .+|+++.|...... ..++....... . .....++.++.+|++.
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-~~~~~~l~~~~---~--~~~~~~~~~~~~Dl~d------- 90 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFN-TGRIEHLYKNP---Q--AHIEGNMKLHYGDLTD------- 90 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCC-CTTTGGGC--------------CEEEEECCTTC-------
T ss_pred cEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCccccc-hhhHHHHhhhh---c--cccCCCceEEEccCCC-------
Confidence 579999999999999999999864 78999999754210 00111000000 0 0012478889999873
Q ss_pred HHHHHHHhcc--cCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCC---ccEEEEecccccCCCCC-CCcc
Q psy4557 400 QDEYVSLSYE--IDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKI---KSFHYVSTDSIYPSTSE-NFQE 470 (958)
Q Consensus 400 ~~~~~~l~~~--vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~---k~~~~vST~~v~~~~~~-~~~e 470 (958)
.+.+..+... +|+||||||..+.. ..+....++|+.||.+|+++|...++ ++|+|+||.++|+.... ++.|
T Consensus 91 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E 170 (375)
T 1t2a_A 91 STCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKE 170 (375)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCT
T ss_pred HHHHHHHHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCc
Confidence 3566666654 69999999986643 34556788999999999999988776 79999999999985432 2333
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc-----
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA----- 544 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~----- 544 (958)
+ .+..+.+.|+.||+.+|+++.... +.|++++++|++++||+.....+ ....+..+++.... |..
T Consensus 171 ~-------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~-~~~~~~~~~~~~~~-g~~~~~~~ 241 (375)
T 1t2a_A 171 T-------TPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANF-VTRKISRSVAKIYL-GQLECFSL 241 (375)
T ss_dssp T-------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTS-HHHHHHHHHHHHHH-TSCSCEEE
T ss_pred c-------CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCc-chHHHHHHHHHHHc-CCCceeEe
Confidence 2 122456789999999999998754 45999999999999998753322 12233444443332 321
Q ss_pred CCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCc
Q psy4557 545 PDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNI 601 (958)
Q Consensus 545 P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~ 601 (958)
.+.+...+|++||++|++++.++.... +.+||+.++.++++.|+++.+.+. |.++
T Consensus 242 g~~~~~~~~i~v~Dva~a~~~~~~~~~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~ 297 (375)
T 1t2a_A 242 GNLDAKRDWGHAKDYVEAMWLMLQNDE--PEDFVIATGEVHSVREFVEKSFLHIGKTI 297 (375)
T ss_dssp SCTTCEECCEEHHHHHHHHHHHHHSSS--CCCEEECCSCCEEHHHHHHHHHHHTTCCE
T ss_pred CCCCceeeeEEHHHHHHHHHHHHhcCC--CceEEEeCCCcccHHHHHHHHHHHhCCCc
Confidence 233456899999999999999886553 478999999999999999999764 6653
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=227.36 Aligned_cols=229 Identities=15% Similarity=0.179 Sum_probs=174.0
Q ss_pred CceEEeccccchHHHHHHHHhcC-CCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVD-TKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~-~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
++|||||||||+|++|+++|+++ ++.+|+++.|...... .+. ..++.++.+|++.
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~---~l~---------------~~~~~~~~~D~~d------ 56 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS---TLA---------------DQGVEVRHGDYNQ------ 56 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH---HHH---------------HTTCEEEECCTTC------
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh---HHh---------------hcCCeEEEeccCC------
Confidence 36999999999999999999986 3578999999654321 111 1357788999873
Q ss_pred cHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcC
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFD 478 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~ 478 (958)
.+.+..+.+++|+|||+|+.. . . ..+|+.|+.+++++|.+.++++|+|+||.++++.
T Consensus 57 -~~~l~~~~~~~d~vi~~a~~~-~----~--~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~--------------- 113 (287)
T 2jl1_A 57 -PESLQKAFAGVSKLLFISGPH-Y----D--NTLLIVQHANVVKAARDAGVKHIAYTGYAFAEES--------------- 113 (287)
T ss_dssp -HHHHHHHTTTCSEEEECCCCC-S----C--HHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGC---------------
T ss_pred -HHHHHHHHhcCCEEEEcCCCC-c----C--chHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC---------------
Confidence 467788888999999999952 1 1 1579999999999999888899999999887520
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC--cCCCCCcCCcccH
Q psy4557 479 DFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY--APDIDWYLEFTPV 556 (958)
Q Consensus 479 ~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~--~P~~~~~~~~~pV 556 (958)
...|+.||+.+|++++. .|++++++|||.++|+... .++..++ ..|. .+..+...+|++|
T Consensus 114 -----~~~y~~~K~~~E~~~~~---~~~~~~ilrp~~~~~~~~~------~~~~~~~----~~~~~~~~~~~~~~~~i~~ 175 (287)
T 2jl1_A 114 -----IIPLAHVHLATEYAIRT---TNIPYTFLRNALYTDFFVN------EGLRAST----ESGAIVTNAGSGIVNSVTR 175 (287)
T ss_dssp -----CSTHHHHHHHHHHHHHH---TTCCEEEEEECCBHHHHSS------GGGHHHH----HHTEEEESCTTCCBCCBCH
T ss_pred -----CCchHHHHHHHHHHHHH---cCCCeEEEECCEeccccch------hhHHHHh----hCCceeccCCCCccCccCH
Confidence 13699999999999853 6999999999998875311 1122222 2232 2334566899999
Q ss_pred HHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCc--cccChHHHHHHH
Q psy4557 557 DFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNI--KTVPYEKWFHKL 613 (958)
Q Consensus 557 D~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~--~~v~~~eW~~~~ 613 (958)
|++|++++.+...+...+++||+.++.++++.|+++.+.+. |.++ ..+|..+|....
T Consensus 176 ~Dva~~~~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~ 235 (287)
T 2jl1_A 176 NELALAAATVLTEEGHENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFL 235 (287)
T ss_dssp HHHHHHHHHHHTSSSCTTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHH
Confidence 99999999988765556789999999999999999999764 7654 456777776543
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=235.97 Aligned_cols=256 Identities=16% Similarity=0.142 Sum_probs=179.1
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++|+++|++++ .+|+++.|..... ..+++....... .....++.++.+|++.
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~Dl~d------- 66 (372)
T 1db3_A 2 KVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSF-NTERVDHIYQDP------HTCNPKFHLHYGDLSD------- 66 (372)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC----------------------------CCEEECCCCSSC-------
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCccc-chHHHHHHhhcc------ccCCCceEEEECCCCC-------
Confidence 579999999999999999999874 7899999865421 011221111000 0012578889999874
Q ss_pred HHHHHHHhcc--cCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCC---ccEEEEecccccCCCCC-CCcc
Q psy4557 400 QDEYVSLSYE--IDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKI---KSFHYVSTDSIYPSTSE-NFQE 470 (958)
Q Consensus 400 ~~~~~~l~~~--vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~---k~~~~vST~~v~~~~~~-~~~e 470 (958)
.+.+..+..+ +|+|||+|+...... ......++|+.||.++++.|...++ ++|+|+||.++|+.... +..|
T Consensus 67 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E 146 (372)
T 1db3_A 67 TSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKE 146 (372)
T ss_dssp HHHHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCT
T ss_pred HHHHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCc
Confidence 3566666554 799999999865432 3445678999999999999988776 79999999999986432 2233
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc-----
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA----- 544 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~----- 544 (958)
+ .+..+.+.|+.||+.+|++++... +.|++++++|++++||+.....+ ...++..+++.+. .|..
T Consensus 147 ~-------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~-~~~~~~~~~~~~~-~g~~~~~~~ 217 (372)
T 1db3_A 147 T-------TPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETF-VTRKITRAIANIA-QGLESCLYL 217 (372)
T ss_dssp T-------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS-HHHHHHHHHHHHH-TTSCCCEEE
T ss_pred c-------CCCCCCChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcc-hhhHHHHHHHHHH-cCCCCceee
Confidence 2 222456789999999999998754 45999999999999998753322 2233444444332 2321
Q ss_pred CCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCc
Q psy4557 545 PDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNI 601 (958)
Q Consensus 545 P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~ 601 (958)
.+.+...+|++||++|++++.+...+. +.+||+.++.++++.|+++.+.+. |.++
T Consensus 218 g~~~~~~~~i~v~Dva~a~~~~~~~~~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~ 273 (372)
T 1db3_A 218 GNMDSLRDWGHAKDYVKMQWMMLQQEQ--PEDFVIATGVQYSVRQFVEMAAAQLGIKL 273 (372)
T ss_dssp SCTTCEECCEEHHHHHHHHHHTTSSSS--CCCEEECCCCCEEHHHHHHHHHHTTTEEE
T ss_pred cCCCceeeeeEHHHHHHHHHHHHhcCC--CceEEEcCCCceeHHHHHHHHHHHhCCCc
Confidence 123456899999999999999886543 478999999999999999999764 6543
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=235.28 Aligned_cols=302 Identities=13% Similarity=0.082 Sum_probs=202.9
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCC------CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTK------CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLS 391 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~------~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~ 391 (958)
++++|||||||||||++|+++|++++. .+|+++.|....... ....++.++.+|++
T Consensus 13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------------------~~~~~~~~~~~Dl~ 74 (342)
T 2hrz_A 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------------------GFSGAVDARAADLS 74 (342)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------------------TCCSEEEEEECCTT
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------------------ccCCceeEEEcCCC
Confidence 456899999999999999999998753 689999986532110 01357888999987
Q ss_pred CCCCCCCcHHHHHHHh-cccCEEEEcccccCc--ccChHHHHhhhHHHHHHHHHhhccCC-----CccEEEEecccccCC
Q psy4557 392 LEMLGLKNQDEYVSLS-YEIDMIIHAAAFVNL--ILPYNALYKSNVLATKNLIEFSFLNK-----IKSFHYVSTDSIYPS 463 (958)
Q Consensus 392 ~~~lGL~~~~~~~~l~-~~vd~IiH~AA~v~~--~~~~~~~~~~NV~gt~~ll~~a~~~~-----~k~~~~vST~~v~~~ 463 (958)
.+ +.+..+. ..+|+|||+||.... ...+...+++|+.||.++++.|...+ +++|+|+||.++|+.
T Consensus 75 d~-------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~ 147 (342)
T 2hrz_A 75 AP-------GEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGA 147 (342)
T ss_dssp ST-------THHHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCS
T ss_pred CH-------HHHHHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCC
Confidence 53 4455555 589999999997642 23456678899999999999987654 689999999999986
Q ss_pred C-CCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhh-CCCCEEEEecCceec-cCCCCCcChhHHHHHHHHHHHH
Q psy4557 464 T-SENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ-MGLPVSIVRCGNIGG-SLEFKNWNLVDLNLYILKAITR 540 (958)
Q Consensus 464 ~-~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~-~glp~~I~R~g~i~G-~~~~g~~n~~d~~~~l~~~~~~ 540 (958)
. ..++.|+ .+..+.+.|+.||+.+|+++..+.. .|++.+++|++.++| +.... .....++..+++....
T Consensus 148 ~~~~~~~E~-------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~-~~~~~~~~~~~~~~~~ 219 (342)
T 2hrz_A 148 PLPYPIPDE-------FHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPN-AAASGFFSNILREPLV 219 (342)
T ss_dssp SCCSSBCTT-------CCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCC-CSGGGHHHHHHHHHHT
T ss_pred CCCCCcCCC-------CCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCc-chhHHHHHHHHHHHhc
Confidence 4 2233333 2224567899999999999987654 489999999999998 44221 1223455566655443
Q ss_pred hCC--cCCC-CCcCCcccHHHHHHHHHHHhcCcCC---CCceEEecCCCCCCHHHHHHHHHHc-CCCcc-ccChHHHHHH
Q psy4557 541 LGY--APDI-DWYLEFTPVDFLTKSLVQLTTNVNN---ANKIYNFINTNPIHIKTLVSVLNTY-GYNIK-TVPYEKWFHK 612 (958)
Q Consensus 541 ~g~--~P~~-~~~~~~~pVD~va~aiv~l~~~~~~---~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~-~v~~~eW~~~ 612 (958)
-.. +|.. +...++++||++|++++.+...... .+.+||+.+ .++++.|+++.+.+. |.+.. .+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~g-~~~s~~e~~~~i~~~~g~~~~~~~~~------ 292 (342)
T 2hrz_A 220 GQEAVLPVPESIRHWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPG-LSATVGEQIEALRKVAGEKAVALIRR------ 292 (342)
T ss_dssp TCCEEECSCTTCEEEEECHHHHHHHHHHHHHSCHHHHCSCCEEECCC-EEEEHHHHHHHHHHHHCHHHHTTEEE------
T ss_pred CCCeeccCCCccceeeEehHHHHHHHHHHHhccccccCCccEEEcCC-CCCCHHHHHHHHHHHcCcccccceee------
Confidence 221 2222 2456789999999999998765432 467999964 679999999998754 43321 0100
Q ss_pred HhccCCCch-hHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy4557 613 LNKRELSEP-LIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNL 676 (958)
Q Consensus 613 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~ 676 (958)
.+.+ ..+... .....+|+++.++ +|+++..--++-|+.+++++. .|.
T Consensus 293 -----~~~~~~~~~~~-------~~~~~~d~~k~~~----lG~~p~~~l~e~l~~~~~~~~-~~~ 340 (342)
T 2hrz_A 293 -----EPNEMIMRMCE-------GWAPGFEAKRARE----LGFTAESSFEEIIQVHIEDEL-GGS 340 (342)
T ss_dssp -----CCCHHHHHHHT-------TSCCCBCCHHHHH----TTCCCCSSHHHHHHHHHHHHS-TTC
T ss_pred -----ccCcchhhhhc-------ccccccChHHHHH----cCCCCCCCHHHHHHHHHHHhc-CCC
Confidence 0011 011111 0112467777654 576653323567888888875 443
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-24 Score=231.33 Aligned_cols=233 Identities=15% Similarity=0.114 Sum_probs=182.2
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++|+++|++++ .+|+++.|..... ...++.++.+|++ +
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~---------------------~~~~~~~~~~Dl~-------d 53 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSDIVDLGA---------------------AEAHEEIVACDLA-------D 53 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTE-EEEEECCSSCCCC---------------------CCTTEEECCCCTT-------C
T ss_pred ceEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCCCccc---------------------cCCCccEEEccCC-------C
Confidence 479999999999999999999764 7899999965421 0135788899987 3
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCC--CCCcccccccCc
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTS--ENFQEDYTVADF 477 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~--~~~~e~~~~~~~ 477 (958)
.+.+..+.+++|+|||+|+.. ...++....++|+.|+.+++++|...++++|+|+||.++|+... .++.|+
T Consensus 54 ~~~~~~~~~~~d~vi~~a~~~-~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~------ 126 (267)
T 3ay3_A 54 AQAVHDLVKDCDGIIHLGGVS-VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTE------ 126 (267)
T ss_dssp HHHHHHHHTTCSEEEECCSCC-SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTT------
T ss_pred HHHHHHHHcCCCEEEECCcCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCC------
Confidence 467778888999999999976 34456778889999999999999888889999999999997532 223332
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHH-hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccH
Q psy4557 478 DDFMTTTSGYGQSKIVSEYLVLNA-GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPV 556 (958)
Q Consensus 478 ~~~~~~~~gY~~SK~~aE~lv~~a-~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pV 556 (958)
.+..+.+.|+.||+.+|++++.. .+.|++++++|||.+|+... +. ....+|+++
T Consensus 127 -~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~~~~~----~~--------------------~~~~~~~~~ 181 (267)
T 3ay3_A 127 -VPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPKPK----DA--------------------RMMATWLSV 181 (267)
T ss_dssp -SCCCCCSHHHHHHHHHHHHHHHHHHTTCCCEEEEEECBCSSSCC----SH--------------------HHHHHBCCH
T ss_pred -CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEEeceeecCCCC----CC--------------------CeeeccccH
Confidence 22345678999999999999765 45699999999999985321 00 113467999
Q ss_pred HHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhc
Q psy4557 557 DFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNK 615 (958)
Q Consensus 557 D~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~ 615 (958)
|++|++++.+...+.....+||+.++...+|.++.+. +..|++.+ +++++|++++..
T Consensus 182 ~dva~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~lg~~p~-~~~~~~~~~~~~ 238 (267)
T 3ay3_A 182 DDFMRLMKRAFVAPKLGCTVVYGASANTESWWDNDKS-AFLGWVPQ-DSSEIWREEIEQ 238 (267)
T ss_dssp HHHHHHHHHHHHSSCCCEEEEEECCSCSSCCBCCGGG-GGGCCCCC-CCGGGGHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCceeEecCCCccccccCHHHH-HHcCCCCC-CCHHHHHHHHHh
Confidence 9999999998876644457899998888888888777 77788754 699999997543
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=227.57 Aligned_cols=234 Identities=15% Similarity=0.124 Sum_probs=181.1
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|||||||||||++|+++|+++ +.+|+++.|...... ..++.++.+|++
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~-G~~V~~~~r~~~~~~---------------------~~~~~~~~~Dl~------- 53 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPM-AEILRLADLSPLDPA---------------------GPNEECVQCDLA------- 53 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGG-EEEEEEEESSCCCCC---------------------CTTEEEEECCTT-------
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc-CCEEEEEecCCcccc---------------------CCCCEEEEcCCC-------
Confidence 357999999999999999999876 468999998754211 357889999987
Q ss_pred cHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC--CCcccccccC
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE--NFQEDYTVAD 476 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~--~~~e~~~~~~ 476 (958)
+.+.+..+.+++|+||||||.. ...+++.++++|+.||.+++++|.+.+.++|+|+||.++|+.... .+.|+
T Consensus 54 d~~~~~~~~~~~D~vi~~Ag~~-~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~----- 127 (267)
T 3rft_A 54 DANAVNAMVAGCDGIVHLGGIS-VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPD----- 127 (267)
T ss_dssp CHHHHHHHHTTCSEEEECCSCC-SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTT-----
T ss_pred CHHHHHHHHcCCCEEEECCCCc-CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCC-----
Confidence 3577888889999999999973 456788889999999999999999888899999999999974321 22222
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHH-hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCccc
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNA-GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTP 555 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a-~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~p 555 (958)
.+..+.+.|+.||+.+|.+++.. .+.|++++++|||.|+|+... .....+|++
T Consensus 128 --~~~~~~~~Y~~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~~~------------------------~~~~~~~~~ 181 (267)
T 3rft_A 128 --VPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNN------------------------YRMLSTWFS 181 (267)
T ss_dssp --SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSCCS------------------------TTHHHHBCC
T ss_pred --CCCCCCChHHHHHHHHHHHHHHHHHHhCCeEEEEEeecccCCCCC------------------------CCceeeEEc
Confidence 22345678999999999999764 467999999999999986321 122346789
Q ss_pred HHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhc
Q psy4557 556 VDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNK 615 (958)
Q Consensus 556 VD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~ 615 (958)
+|++++.+..+...+.....++++.++.+.+|-++... +..|++.+ .+.++|.+++..
T Consensus 182 ~~d~a~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~g~~p~-~~~~~~~~~l~~ 239 (267)
T 3rft_A 182 HDDFVSLIEAVFRAPVLGCPVVWGASANDAGWWDNSHL-GFLGWKPK-DNAEAFRRHITE 239 (267)
T ss_dssp HHHHHHHHHHHHHCSCCCSCEEEECCCCTTCCBCCGGG-GGGCCCCC-CCGGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEeCCCCCCcccChhH-HHCCCCCC-CCHHHHHHHHHh
Confidence 99999999998877666667888888887777665332 45577543 445889887643
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=236.28 Aligned_cols=234 Identities=17% Similarity=0.141 Sum_probs=151.4
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++|+++|++++ .+|++++|.... ++ ++.+|++.+
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~------------------------~~--~~~~Dl~d~------ 49 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGFRRAR------------------------PK--FEQVNLLDS------ 49 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC------------------------------------------------
T ss_pred CeEEEECCCcHHHHHHHHHHHhCC-CeEEEEccCCCC------------------------CC--eEEecCCCH------
Confidence 579999999999999999999764 789999985321 01 456787643
Q ss_pred HHHHHHHhc--ccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccc
Q psy4557 400 QDEYVSLSY--EIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTV 474 (958)
Q Consensus 400 ~~~~~~l~~--~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~ 474 (958)
+.+..+.. ++|+|||+|+..+.. ..+..+.++|+.||.+++++|...+. +|+|+||.++|+....++.|+.
T Consensus 50 -~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~~~~~~~E~~-- 125 (315)
T 2ydy_A 50 -NAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDGTNPPYREED-- 125 (315)
T ss_dssp ---CHHHHHHHCCSEEEECC-------------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCSSSCSBCTTS--
T ss_pred -HHHHHHHHhhCCCEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCCCCCCCCCCC--
Confidence 33334443 599999999986542 34556788999999999999987775 9999999999986333333332
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC--CCCCcCC
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP--DIDWYLE 552 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P--~~~~~~~ 552 (958)
+..+.+.|+.||+.+|++++.. +++++++||+.|||+..++..+ ++..+++.....|... ..+...+
T Consensus 126 -----~~~~~~~Y~~sK~~~e~~~~~~---~~~~~~lR~~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (315)
T 2ydy_A 126 -----IPAPLNLYGKTKLDGEKAVLEN---NLGAAVLRIPILYGEVEKLEES---AVTVMFDKVQFSNKSANMDHWQQRF 194 (315)
T ss_dssp -----CCCCCSHHHHHHHHHHHHHHHH---CTTCEEEEECSEECSCSSGGGS---TTGGGHHHHHCCSSCEEEECSSBBC
T ss_pred -----CCCCcCHHHHHHHHHHHHHHHh---CCCeEEEeeeeeeCCCCccccc---HHHHHHHHHHhcCCCeeeccCceEC
Confidence 2245678999999999999775 5788999999999987653211 1222333322023211 1234678
Q ss_pred cccHHHHHHHHHHHhcCc---CCCCceEEecCCCCCCHHHHHHHHHHc-CCCc
Q psy4557 553 FTPVDFLTKSLVQLTTNV---NNANKIYNFINTNPIHIKTLVSVLNTY-GYNI 601 (958)
Q Consensus 553 ~~pVD~va~aiv~l~~~~---~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~ 601 (958)
+++||++|++++.++... ...+.+||+.++.++++.|+++.+.+. |.+.
T Consensus 195 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~ 247 (315)
T 2ydy_A 195 PTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPS 247 (315)
T ss_dssp CEEHHHHHHHHHHHHHHHHTCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCC
T ss_pred cEEHHHHHHHHHHHHHhhccccCCCCeEEEcCCCcccHHHHHHHHHHHhCCCh
Confidence 999999999999887643 345789999999999999999998753 6653
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=235.45 Aligned_cols=309 Identities=15% Similarity=0.137 Sum_probs=191.4
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|||||||||||+||+++|+++ +.+|++++|..+.......+.+ + . ...++.++.+|++.+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~-G~~V~~~~r~~~~~~~~~~~~~-~---------~-~~~~~~~~~~Dl~d~----- 71 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQK-GYAVNTTVRDPDNQKKVSHLLE-L---------Q-ELGDLKIFRADLTDE----- 71 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHT-TCEEEEEESCTTCTTTTHHHHH-H---------G-GGSCEEEEECCTTTS-----
T ss_pred CCEEEEECCchHHHHHHHHHHHHC-CCEEEEEEcCcchhhhHHHHHh-c---------C-CCCcEEEEecCCCCh-----
Confidence 468999999999999999999986 4689998886543211111211 1 0 124788899999753
Q ss_pred cHHHHHHHhcccCEEEEcccccCcc--cChHHHHhhhHHHHHHHHHhhccCC-CccEEEEeccc-ccCCC--C--CCCcc
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLI--LPYNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDS-IYPST--S--ENFQE 470 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~--~~~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~-v~~~~--~--~~~~e 470 (958)
+.+..+..++|+|||+||.+++. .+..++.++||.||.++++.|.+.+ +++|+|+||.+ +|+.. . ..+.|
T Consensus 72 --~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E 149 (338)
T 2rh8_A 72 --LSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDE 149 (338)
T ss_dssp --SSSHHHHTTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCT
T ss_pred --HHHHHHHcCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccCh
Confidence 34455667899999999987543 1233478899999999999998774 89999999987 44321 1 12333
Q ss_pred ccccc-CcCCCCCC-CCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC---c
Q psy4557 471 DYTVA-DFDDFMTT-TSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY---A 544 (958)
Q Consensus 471 ~~~~~-~~~~~~~~-~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~---~ 544 (958)
+.... ....+..+ ...|+.||+.+|+++..+. +.|++++++|||+|||+...+... ..+..+... ..|. +
T Consensus 150 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~--~~~~~~~~~--~~g~~~~~ 225 (338)
T 2rh8_A 150 KNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVP--SSIGLAMSL--ITGNEFLI 225 (338)
T ss_dssp TTTTCC-------CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCC--HHHHHHHHH--HHTCHHHH
T ss_pred hhccchhhccccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCC--chHHHHHHH--HcCCcccc
Confidence 32110 00001111 2269999999999998754 469999999999999997644322 111111110 0110 0
Q ss_pred CCC------CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHcCCCccccChHHHHHHHhccCC
Q psy4557 545 PDI------DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNKREL 618 (958)
Q Consensus 545 P~~------~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~g~~~~~v~~~eW~~~~~~~~~ 618 (958)
+.. ...++|++||++|++++.++.... .+..|++.+ ..+++.|+++.+.+.-..+ .+|.. | . .
T Consensus 226 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~~~~-~~~s~~e~~~~l~~~~~~~-~~~~~-~----~--~- 294 (338)
T 2rh8_A 226 NGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKES-ASGRYICCA-ANTSVPELAKFLSKRYPQY-KVPTD-F----G--D- 294 (338)
T ss_dssp HHHHHHHHHHSSEEEEEHHHHHHHHHHHHHCTT-CCEEEEECS-EEECHHHHHHHHHHHCTTS-CCCCC-C----T--T-
T ss_pred ccccccccccCcccEEEHHHHHHHHHHHHcCCC-cCCcEEEec-CCCCHHHHHHHHHHhCCCC-CCCCC-C----C--C-
Confidence 000 112479999999999999876543 345788876 4689999999987641111 11210 0 0 0
Q ss_pred CchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q psy4557 619 SEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLRNSNLLP 678 (958)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~~~g~l~ 678 (958)
.... ....+|+++. +.+|.++..--++-|+.+++|+.+.|+++
T Consensus 295 -----------~~~~--~~~~~d~~k~----~~lG~~p~~~l~~gl~~~~~~~~~~~~~~ 337 (338)
T 2rh8_A 295 -----------FPPK--SKLIISSEKL----VKEGFSFKYGIEEIYDESVEYFKAKGLLQ 337 (338)
T ss_dssp -----------SCSS--CSCCCCCHHH----HHHTCCCSCCHHHHHHHHHHHHHHTTCC-
T ss_pred -----------CCcC--cceeechHHH----HHhCCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 0000 1134677665 33576654323567899999999998874
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=245.12 Aligned_cols=214 Identities=16% Similarity=0.194 Sum_probs=175.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCe-EEEEecChh---hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAK-VVAVARRID---RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~-Vi~~~r~~~---~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+|+++||||++|||+++|+.|+++|++ |++++|+.. .++++.+++...+.++.++.||++|.+++.++++.+ ..
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i-~~ 303 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI-GD 303 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS-CT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH-Hh
Confidence 5789999999999999999999999995 999999864 567777778777778999999999999999999988 66
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
++++|+||||||+.....+.+.+.++|++++++|+.|++++.+.+.+ .+.++||++||+++..+.++.+.|+++|
T Consensus 304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~-----~~~~~~V~~SS~a~~~g~~g~~~Yaaak 378 (486)
T 2fr1_A 304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRE-----LDLTAFVLFSSFASAFGAPGLGGYAPGN 378 (486)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT-----SCCSEEEEEEEHHHHTCCTTCTTTHHHH
T ss_pred cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCc-----CCCCEEEEEcChHhcCCCCCCHHHHHHH
Confidence 79999999999998878888999999999999999999999886532 3458999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCC-CCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTE-LLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~-~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+++++|++.++ ..|+++++|+||++.++ |..... ...+ .......++|++++..+..++..+..
T Consensus 379 a~l~~la~~~~----~~gi~v~~i~pG~~~~~gm~~~~~----~~~~-~~~g~~~i~~e~~a~~l~~~l~~~~~ 443 (486)
T 2fr1_A 379 AYLDGLAQQRR----SDGLPATAVAWGTWAGSGMAEGPV----ADRF-RRHGVIEMPPETACRALQNALDRAEV 443 (486)
T ss_dssp HHHHHHHHHHH----HTTCCCEEEEECCBC----------------C-TTTTEECBCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHH----hcCCeEEEEECCeeCCCcccchhH----HHHH-HhcCCCCCCHHHHHHHHHHHHhCCCC
Confidence 99998876544 56999999999999886 532211 0111 11223468999999999998876654
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-23 Score=224.03 Aligned_cols=277 Identities=13% Similarity=0.183 Sum_probs=185.3
Q ss_pred ceEEeccccchHHHHHHHHhcC-CCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVD-TKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~-~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+|||||||||+|++|+++|+++ ++.+|+++.|...... .+. ..++.++.+|++.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~---~~~---------------~~~~~~~~~D~~d------- 55 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ---ALA---------------AQGITVRQADYGD------- 55 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH---HHH---------------HTTCEEEECCTTC-------
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh---hhh---------------cCCCeEEEcCCCC-------
Confidence 4899999999999999999986 3578999999654321 111 1357788999873
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDD 479 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~ 479 (958)
.+.+..+.+++|+|||+|+.. . ..|+.+|+++++.|.+.++++|+|+||.++|.
T Consensus 56 ~~~~~~~~~~~d~vi~~a~~~-----~----~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~----------------- 109 (286)
T 2zcu_A 56 EAALTSALQGVEKLLLISSSE-----V----GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT----------------- 109 (286)
T ss_dssp HHHHHHHTTTCSEEEECC-----------------CHHHHHHHHHHHHTCCEEEEEEETTTTT-----------------
T ss_pred HHHHHHHHhCCCEEEEeCCCC-----c----hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC-----------------
Confidence 467888888999999999952 1 25899999999999888889999999988761
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC--cCCCCCcCCcccHH
Q psy4557 480 FMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY--APDIDWYLEFTPVD 557 (958)
Q Consensus 480 ~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~--~P~~~~~~~~~pVD 557 (958)
....|+.||+.+|+++.. .|++++++|||.++++. ..++..+ ...+. .+..+...++++++
T Consensus 110 ---~~~~y~~sK~~~e~~~~~---~~~~~~ilrp~~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~~~i~~~ 172 (286)
T 2zcu_A 110 ---SPLGLADEHIETEKMLAD---SGIVYTLLRNGWYSENY-------LASAPAA----LEHGVFIGAAGDGKIASATRA 172 (286)
T ss_dssp ---CCSTTHHHHHHHHHHHHH---HCSEEEEEEECCBHHHH-------HTTHHHH----HHHTEEEESCTTCCBCCBCHH
T ss_pred ---CcchhHHHHHHHHHHHHH---cCCCeEEEeChHHhhhh-------HHHhHHh----hcCCceeccCCCCccccccHH
Confidence 013799999999999864 58999999998766542 1112222 22232 33445678999999
Q ss_pred HHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCc--cccChHHHHHHHhccCCCchhHHHHhhcccccc
Q psy4557 558 FLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNI--KTVPYEKWFHKLNKRELSEPLIQILRNKGKEYL 634 (958)
Q Consensus 558 ~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~--~~v~~~eW~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (958)
++|++++.+...+...+++||+.++.++++.|+.+.+.+. |.++ ..+|..+|...+.....+......+........
T Consensus 173 Dva~~~~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (286)
T 2zcu_A 173 DYAAAAARVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGAS 252 (286)
T ss_dssp HHHHHHHHHHHSSSCTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 9999999988765556789999999999999999998764 6654 466766665543221222222222211000011
Q ss_pred ccCcccccHHHHHHHhhCCCCCCCCC-HHHHHHHHHH
Q psy4557 635 TVNNSYCQRNTLALLKSCDETYPETN-DHTVRQFLDN 670 (958)
Q Consensus 635 ~~~~~~~~~~t~~~L~~~~~~~p~~~-~~~~~~~~~~ 670 (958)
.....+|+++.++.| | +|+.+ ++.|++++++
T Consensus 253 ~~~~~~~~~~~~~~l---g--~~~~~~~e~l~~~~~~ 284 (286)
T 2zcu_A 253 KGGLFDDSKTLSKLI---G--HPTTTLAESVSHLFNV 284 (286)
T ss_dssp TTTTCCCCCHHHHHH---T--SCCCCHHHHHHGGGC-
T ss_pred CCCCccCchHHHHHh---C--cCCCCHHHHHHHHHhh
Confidence 122345666665554 4 35554 3456665544
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=239.47 Aligned_cols=209 Identities=21% Similarity=0.234 Sum_probs=165.5
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|+++|++++..+|+++.|. .+.
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~--------------------------------------------~d~ 37 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ--------------------------------------------TKE 37 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT--------------------------------------------CCH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC--------------------------------------------CCH
Confidence 699999999999999999998765477776652 123
Q ss_pred HHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCc-cEEEEecccccCCCCCCCcccccccCcCC
Q psy4557 401 DEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIK-SFHYVSTDSIYPSTSENFQEDYTVADFDD 479 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k-~~~~vST~~v~~~~~~~~~e~~~~~~~~~ 479 (958)
+.+..+.+++|+|||+||..+.. ....+.+.|+.++++|+++|++.+++ +|+|+||.++|+
T Consensus 38 ~~l~~~~~~~d~Vih~a~~~~~~-~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~----------------- 99 (369)
T 3st7_A 38 EELESALLKADFIVHLAGVNRPE-HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ----------------- 99 (369)
T ss_dssp HHHHHHHHHCSEEEECCCSBCTT-CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS-----------------
T ss_pred HHHHHHhccCCEEEECCcCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC-----------------
Confidence 55666667899999999987643 44566789999999999999988877 899999999876
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhh-CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC--CCCCcCCcccH
Q psy4557 480 FMTTTSGYGQSKIVSEYLVLNAGQ-MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP--DIDWYLEFTPV 556 (958)
Q Consensus 480 ~~~~~~gY~~SK~~aE~lv~~a~~-~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P--~~~~~~~~~pV 556 (958)
.+.|+.||+.+|++++.+.+ .|++++|+||+++||+...+.. ..++..+++....-..++ +.+..+++++|
T Consensus 100 ----~~~Y~~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 173 (369)
T 3st7_A 100 ----DNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNY--NSVIATFCYKIARNEEIQVNDRNVELTLNYV 173 (369)
T ss_dssp ----CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTS--SCHHHHHHHHHHTTCCCCCSCTTCEEEEEEH
T ss_pred ----CCCchHHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCCc--chHHHHHHHHHHcCCCeEecCCCeEEEEEEH
Confidence 25799999999999987654 5999999999999999765432 234455555444322222 23456899999
Q ss_pred HHHHHHHHHHhcCcCCC-CceEEecCCCCCCHHHHHHHHHHc
Q psy4557 557 DFLTKSLVQLTTNVNNA-NKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 557 D~va~aiv~l~~~~~~~-~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
|++|++++.++..+... +.+||+.++.++++.|+++.+.+.
T Consensus 174 ~Dva~~~~~~l~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~ 215 (369)
T 3st7_A 174 DDIVAEIKRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKF 215 (369)
T ss_dssp HHHHHHHHHHHHTCCCEETTEECCSCCEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCCceEEeCCCCceeHHHHHHHHHHH
Confidence 99999999998776543 789999999999999999988753
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-23 Score=224.64 Aligned_cols=218 Identities=14% Similarity=0.114 Sum_probs=165.0
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||| ||||++|+++|+++ +.+|++++|..... ..+. ..+++++.+|++...
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~-g~~V~~~~r~~~~~---~~~~---------------~~~~~~~~~D~~d~~----- 60 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQ-GWRIIGTSRNPDQM---EAIR---------------ASGAEPLLWPGEEPS----- 60 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGG-TCEEEEEESCGGGH---HHHH---------------HTTEEEEESSSSCCC-----
T ss_pred CcEEEECC-cHHHHHHHHHHHHC-CCEEEEEEcChhhh---hhHh---------------hCCCeEEEecccccc-----
Confidence 57999998 99999999999987 47899999965421 1111 146889999998621
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhcc--CCCccEEEEecccccCCCCC-CCcccccccC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFL--NKIKSFHYVSTDSIYPSTSE-NFQEDYTVAD 476 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~--~~~k~~~~vST~~v~~~~~~-~~~e~~~~~~ 476 (958)
..++|+|||+|+...... ..++++++.|.. .++++|+|+||.+|||.... .+.|+
T Consensus 61 -------~~~~d~vi~~a~~~~~~~----------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~----- 118 (286)
T 3ius_A 61 -------LDGVTHLLISTAPDSGGD----------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDET----- 118 (286)
T ss_dssp -------CTTCCEEEECCCCBTTBC----------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTT-----
T ss_pred -------cCCCCEEEECCCcccccc----------HHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCC-----
Confidence 357899999999765432 135788888877 67789999999999986532 22332
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC---cCCCCCcCCc
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY---APDIDWYLEF 553 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~---~P~~~~~~~~ 553 (958)
.+..+.+.|+.||+.+|+++..+ .|++++|+||+.+||+....... + ..|. ++..+...+|
T Consensus 119 --~~~~p~~~Y~~sK~~~E~~~~~~--~~~~~~ilRp~~v~G~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~ 182 (286)
T 3ius_A 119 --TPLTPTAARGRWRVMAEQQWQAV--PNLPLHVFRLAGIYGPGRGPFSK-------L-----GKGGIRRIIKPGQVFSR 182 (286)
T ss_dssp --SCCCCCSHHHHHHHHHHHHHHHS--TTCCEEEEEECEEEBTTBSSSTT-------S-----SSSCCCEEECTTCCBCE
T ss_pred --CCCCCCCHHHHHHHHHHHHHHhh--cCCCEEEEeccceECCCchHHHH-------H-----hcCCccccCCCCcccce
Confidence 22356689999999999999877 79999999999999987533211 1 1122 1222456899
Q ss_pred ccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCc
Q psy4557 554 TPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNI 601 (958)
Q Consensus 554 ~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~ 601 (958)
++||++|++++.+..... .+++||+.++.++++.|+.+.+.+. |.+.
T Consensus 183 i~v~Dva~a~~~~~~~~~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~ 230 (286)
T 3ius_A 183 IHVEDIAQVLAASMARPD-PGAVYNVCDDEPVPPQDVIAYAAELQGLPL 230 (286)
T ss_dssp EEHHHHHHHHHHHHHSCC-TTCEEEECCSCCBCHHHHHHHHHHHHTCCC
T ss_pred EEHHHHHHHHHHHHhCCC-CCCEEEEeCCCCccHHHHHHHHHHHcCCCC
Confidence 999999999999987765 5789999999999999999998764 6553
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-23 Score=243.42 Aligned_cols=211 Identities=14% Similarity=0.204 Sum_probs=177.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChh---hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRID---RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~---~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+|+++||||++|||+++|+.|+++|+ +|++++|+.. .++++.+++...+.++.++.||++|.++++++++.
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~---- 333 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTA---- 333 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHH----
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhc----
Confidence 578999999999999999999999999 6999999863 56777778877777899999999999999988876
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+++|+||||||+.....+.+.+.++|++++++|+.|++++.+.+.+ + .+.++||++||+++..+.++...|+++|
T Consensus 334 -~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~-~---~~~~~~V~~SS~a~~~g~~g~~~YaaaK 408 (511)
T 2z5l_A 334 -YPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTAD-I---KGLDAFVLFSSVTGTWGNAGQGAYAAAN 408 (511)
T ss_dssp -SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSS-C---TTCCCEEEEEEGGGTTCCTTBHHHHHHH
T ss_pred -CCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhh-c---cCCCEEEEEeCHHhcCCCCCCHHHHHHH
Confidence 7899999999998888888999999999999999999998876532 1 1458999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcc-cCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDV-KTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v-~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+++++|++.+ ...|+++++|+||++ .|+|..... ..... ......++|+++++.+...+..+..
T Consensus 409 a~ld~la~~~----~~~gi~v~sv~pG~~~~tgm~~~~~----~~~~~-~~g~~~l~~e~~a~~l~~al~~~~~ 473 (511)
T 2z5l_A 409 AALDALAERR----RAAGLPATSVAWGLWGGGGMAAGAG----EESLS-RRGLRAMDPDAAVDALLGAMGRNDV 473 (511)
T ss_dssp HHHHHHHHHH----HTTTCCCEEEEECCBCSTTCCCCHH----HHHHH-HHTBCCBCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHH----HHcCCcEEEEECCcccCCccccccc----HHHHH-hcCCCCCCHHHHHHHHHHHHhCCCC
Confidence 9999998865 367999999999999 788864311 11111 1234578999999999998876654
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=229.01 Aligned_cols=228 Identities=21% Similarity=0.263 Sum_probs=172.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcC-CCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVD-TKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~-~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
++++|||||||||+|++|+++|+++ +..+|+++.|.... ...+.+. + . ..++.++.+|++.
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~---~~~~~~~---~------~--~~~v~~~~~Dl~d---- 81 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELK---QSEMAME---F------N--DPRMRFFIGDVRD---- 81 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHH---HHHHHHH---H------C--CTTEEEEECCTTC----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhh---HHHHHHH---h------c--CCCEEEEECCCCC----
Confidence 5679999999999999999999987 43489999985321 1222211 1 0 2578999999873
Q ss_pred CCcHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCccccc
Q psy4557 397 LKNQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYT 473 (958)
Q Consensus 397 L~~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~ 473 (958)
.+....+.+++|+|||+||..+.. ....+..++|+.||.+++++|...++++|+|+||..++.
T Consensus 82 ---~~~l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~~----------- 147 (344)
T 2gn4_A 82 ---LERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAAN----------- 147 (344)
T ss_dssp ---HHHHHHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSS-----------
T ss_pred ---HHHHHHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccCC-----------
Confidence 466777788999999999976531 234567889999999999999988889999999976531
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHhh----CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC--cC--
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAGQ----MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY--AP-- 545 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~----~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~--~P-- 545 (958)
+.+.|+.||+.+|+++..+.. .|++++++|||+|+|+.. + .+..+++.... |. ++
T Consensus 148 ---------p~~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~----~---~i~~~~~~~~~-g~~~~~i~ 210 (344)
T 2gn4_A 148 ---------PINLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG----S---VVPFFKKLVQN-KASEIPIT 210 (344)
T ss_dssp ---------CCSHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT----S---HHHHHHHHHHH-TCCCEEES
T ss_pred ---------CccHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC----C---HHHHHHHHHHc-CCCceEEe
Confidence 236899999999999987653 589999999999999762 1 23344443332 32 22
Q ss_pred CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 546 DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 546 ~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
+.+...+|++++++|++++.+.... ..+.+||+.++ .+++.|+++.+.+
T Consensus 211 ~~~~~r~~i~v~D~a~~v~~~l~~~-~~g~~~~~~~~-~~s~~el~~~i~~ 259 (344)
T 2gn4_A 211 DIRMTRFWITLDEGVSFVLKSLKRM-HGGEIFVPKIP-SMKMTDLAKALAP 259 (344)
T ss_dssp CTTCEEEEECHHHHHHHHHHHHHHC-CSSCEEEECCC-EEEHHHHHHHHCT
T ss_pred CCCeEEeeEEHHHHHHHHHHHHhhc-cCCCEEecCCC-cEEHHHHHHHHHH
Confidence 3334578999999999999987654 35789999876 6999999998864
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-23 Score=232.02 Aligned_cols=243 Identities=19% Similarity=0.215 Sum_probs=176.6
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhh-HHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKT-LLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~-~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++|||||||||+|++|++.|++++ .+|+|++|..+... ...++.. +. ..++.++.||++.
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~~~~-l~-----------~~~v~~~~~Dl~d----- 71 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGPRSPSKAKIFKA-LE-----------DKGAIIVYGLINE----- 71 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCCCHHHHHHHHH-HH-----------HTTCEEEECCTTC-----
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCCChhHHHHHHH-HH-----------hCCcEEEEeecCC-----
Confidence 4589999999999999999999875 78999999763221 1222221 11 2578999999873
Q ss_pred CcHHHHHHHhc--ccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCC-CccEEEEecccccCCCCCCCcccccc
Q psy4557 398 KNQDEYVSLSY--EIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDSIYPSTSENFQEDYTV 474 (958)
Q Consensus 398 ~~~~~~~~l~~--~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~v~~~~~~~~~e~~~~ 474 (958)
.+.+..+.+ ++|+|||+|+.. |+.++.+|+++|...+ +++|++ | +||.. ..+.
T Consensus 72 --~~~l~~~~~~~~~d~Vi~~a~~~------------n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~---~~e~--- 127 (346)
T 3i6i_A 72 --QEAMEKILKEHEIDIVVSTVGGE------------SILDQIALVKAMKAVGTIKRFLP-S---EFGHD---VNRA--- 127 (346)
T ss_dssp --HHHHHHHHHHTTCCEEEECCCGG------------GGGGHHHHHHHHHHHCCCSEEEC-S---CCSSC---TTTC---
T ss_pred --HHHHHHHHhhCCCCEEEECCchh------------hHHHHHHHHHHHHHcCCceEEee-c---ccCCC---CCcc---
Confidence 467888888 999999999972 8899999999999887 888876 3 45532 1111
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC---cCCCCCcC
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY---APDIDWYL 551 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~---~P~~~~~~ 551 (958)
.+..+.++|+.+|+.+|++++. .|++++|+|||.++|....+..... ......+. ..+.+..+
T Consensus 128 ----~~~~p~~~y~~sK~~~e~~l~~---~g~~~tivrpg~~~g~~~~~~~~~~-------~~~~~~~~~~~~g~g~~~~ 193 (346)
T 3i6i_A 128 ----DPVEPGLNMYREKRRVRQLVEE---SGIPFTYICCNSIASWPYYNNIHPS-------EVLPPTDFFQIYGDGNVKA 193 (346)
T ss_dssp ----CCCTTHHHHHHHHHHHHHHHHH---TTCCBEEEECCEESSCCCSCC------------CCCCSSCEEEETTSCCCE
T ss_pred ----CcCCCcchHHHHHHHHHHHHHH---cCCCEEEEEecccccccCccccccc-------cccCCCceEEEccCCCceE
Confidence 1123456899999999999875 5899999999999996532221110 00001121 11234568
Q ss_pred CcccHHHHHHHHHHHhcCcCCCCceEEecCC-CCCCHHHHHHHHHHc-CCC--ccccChHHHHHHHhccC
Q psy4557 552 EFTPVDFLTKSLVQLTTNVNNANKIYNFINT-NPIHIKTLVSVLNTY-GYN--IKTVPYEKWFHKLNKRE 617 (958)
Q Consensus 552 ~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~-~~~~~~~l~~~l~~~-g~~--~~~v~~~eW~~~~~~~~ 617 (958)
+|+++|++|++++.+...+...+++||+..+ ..+++.|+++.+.+. |.+ +..+|.++|.+.+....
T Consensus 194 ~~i~~~Dva~~~~~~l~~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 263 (346)
T 3i6i_A 194 YFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENI 263 (346)
T ss_dssp EEECHHHHHHHHHHHTTCGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCC
T ss_pred EecCHHHHHHHHHHHHhCccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCC
Confidence 9999999999999999877666889999864 799999999999764 655 45699999988765433
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=218.09 Aligned_cols=210 Identities=15% Similarity=0.205 Sum_probs=165.1
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||+|++++++|+++ +.+|+++.|..... .. ..++.++.+|++. ..
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~-------------------~~-~~~~~~~~~D~~d------~~ 54 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTT-DYQIYAGARKVEQV-------------------PQ-YNNVKAVHFDVDW------TP 54 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTS-SCEEEEEESSGGGS-------------------CC-CTTEEEEECCTTS------CH
T ss_pred eEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCccch-------------------hh-cCCceEEEecccC------CH
Confidence 6999999999999999999976 47999999964321 11 1578999999874 14
Q ss_pred HHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCCC
Q psy4557 401 DEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDF 480 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~ 480 (958)
+.+..+.+++|+|||+|+... .+..++|+.|+.+++++|++.++++|+|+||.++++.. ++.| .+
T Consensus 55 ~~~~~~~~~~d~vi~~ag~~~-----~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~--~~~e--------~~ 119 (219)
T 3dqp_A 55 EEMAKQLHGMDAIINVSGSGG-----KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE--KWIG--------AG 119 (219)
T ss_dssp HHHHTTTTTCSEEEECCCCTT-----SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG--GCCS--------HH
T ss_pred HHHHHHHcCCCEEEECCcCCC-----CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC--cccc--------cc
Confidence 677778889999999999764 23567899999999999998888999999998776532 2222 11
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHH
Q psy4557 481 MTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLT 560 (958)
Q Consensus 481 ~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va 560 (958)
..+.+.|+.||+.+|++++ ...|++++++|||.++|+...+... .+ +...++++++++|
T Consensus 120 ~~~~~~Y~~sK~~~e~~~~--~~~~i~~~ilrp~~v~g~~~~~~~~--------------~~-----~~~~~~i~~~Dva 178 (219)
T 3dqp_A 120 FDALKDYYIAKHFADLYLT--KETNLDYTIIQPGALTEEEATGLID--------------IN-----DEVSASNTIGDVA 178 (219)
T ss_dssp HHHTHHHHHHHHHHHHHHH--HSCCCEEEEEEECSEECSCCCSEEE--------------ES-----SSCCCCEEHHHHH
T ss_pred cccccHHHHHHHHHHHHHH--hccCCcEEEEeCceEecCCCCCccc--------------cC-----CCcCCcccHHHHH
Confidence 1345689999999999987 4569999999999999987654432 11 4467899999999
Q ss_pred HHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHH
Q psy4557 561 KSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVL 594 (958)
Q Consensus 561 ~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l 594 (958)
++++.++.++...+++||+.++ ..++.|+.+..
T Consensus 179 ~~i~~~l~~~~~~g~~~~i~~g-~~~~~e~~~~~ 211 (219)
T 3dqp_A 179 DTIKELVMTDHSIGKVISMHNG-KTAIKEALESL 211 (219)
T ss_dssp HHHHHHHTCGGGTTEEEEEEEC-SEEHHHHHHTT
T ss_pred HHHHHHHhCccccCcEEEeCCC-CccHHHHHHHH
Confidence 9999999877666899999876 48888876543
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=246.31 Aligned_cols=240 Identities=18% Similarity=0.109 Sum_probs=165.9
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+++|||||||||||++|++.|+++ +.+|+|++|..... ..+.+|+... +
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~-G~~V~~l~R~~~~~--------------------------~~v~~d~~~~---~- 195 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTG-GHEVIQLVRKEPKP--------------------------GKRFWDPLNP---A- 195 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESSSCCT--------------------------TCEECCTTSC---C-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCc--------------------------cceeecccch---h-
Confidence 568999999999999999999987 46999999975421 1145565421 1
Q ss_pred cHHHHHHHhcccCEEEEcccccCc---c-cChHHHHhhhHHHHHHHHHh-hccCCCccEEEEecccccCC-CC-CCCccc
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNL---I-LPYNALYKSNVLATKNLIEF-SFLNKIKSFHYVSTDSIYPS-TS-ENFQED 471 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~---~-~~~~~~~~~NV~gt~~ll~~-a~~~~~k~~~~vST~~v~~~-~~-~~~~e~ 471 (958)
.....++|+|||+||.... . .....++.+|+.||.+|+++ |...++++|+|+||.+|||. .. ..+.|+
T Consensus 196 -----~~~l~~~D~Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~ 270 (516)
T 3oh8_A 196 -----SDLLDGADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEE 270 (516)
T ss_dssp -----TTTTTTCSEEEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTT
T ss_pred -----HHhcCCCCEEEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCC
Confidence 1234589999999998643 2 23456788999999999998 66677889999999999983 21 122222
Q ss_pred ccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhC---CcCCCC
Q psy4557 472 YTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLG---YAPDID 548 (958)
Q Consensus 472 ~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g---~~P~~~ 548 (958)
. + .+.+.|+.+|..+|+++..+...|++++|+|||+|||+.. + ++..++... ..| .+.+.+
T Consensus 271 ~-------~-~~~~~y~~~~~~~E~~~~~~~~~gi~~~ilRp~~v~Gp~~----~---~~~~~~~~~-~~g~~~~~g~g~ 334 (516)
T 3oh8_A 271 S-------E-SGDDFLAEVCRDWEHATAPASDAGKRVAFIRTGVALSGRG----G---MLPLLKTLF-STGLGGKFGDGT 334 (516)
T ss_dssp S-------C-CCSSHHHHHHHHHHHTTHHHHHTTCEEEEEEECEEEBTTB----S---HHHHHHHTT-C---CCCCTTSC
T ss_pred C-------C-CCcChHHHHHHHHHHHHHHHHhCCCCEEEEEeeEEECCCC----C---hHHHHHHHH-HhCCCcccCCCC
Confidence 1 1 1456899999999999888878899999999999999862 1 223332221 122 223344
Q ss_pred CcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHH
Q psy4557 549 WYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHK 612 (958)
Q Consensus 549 ~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~ 612 (958)
...+|++||++|++++.++.++. .+.+||++++.++++.|+++.+.+. |.+. .++...|..+
T Consensus 335 ~~~~~i~v~Dva~ai~~~l~~~~-~~g~~ni~~~~~~s~~el~~~i~~~~g~~~-~~~~p~~~~~ 397 (516)
T 3oh8_A 335 SWFSWIAIDDLTDIYYRAIVDAQ-ISGPINAVAPNPVSNADMTKILATSMHRPA-FIQIPSLGPK 397 (516)
T ss_dssp CEECEEEHHHHHHHHHHHHHCTT-CCEEEEESCSCCEEHHHHHHHTTC-----------------
T ss_pred ceEceEeHHHHHHHHHHHHhCcc-cCCcEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCHHHHH
Confidence 66899999999999999987654 3568999999999999999998753 6554 4555566443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-23 Score=217.68 Aligned_cols=216 Identities=17% Similarity=0.162 Sum_probs=164.4
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCce-EEecccCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRL-ILVKSDLSLEML 395 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri-~~v~gDl~~~~l 395 (958)
.++++|||||||||||++|+++|+++ +.+|+++.|..... +.+. ..++ .++.+|++ .
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~~~~---~~~~---------------~~~~~~~~~~Dl~-~-- 76 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNK-GHEPVAMVRNEEQG---PELR---------------ERGASDIVVANLE-E-- 76 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSGGGH---HHHH---------------HTTCSEEEECCTT-S--
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhC-CCeEEEEECChHHH---HHHH---------------hCCCceEEEcccH-H--
Confidence 35789999999999999999999986 47999999964421 1111 1367 88999998 1
Q ss_pred CCCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCccccccc
Q psy4557 396 GLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVA 475 (958)
Q Consensus 396 GL~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~ 475 (958)
.+.....++|+|||+|+.... ..+...+++|+.|+.++++.|.+.+.++|+|+||.+.+.. +. .+
T Consensus 77 ------~~~~~~~~~D~vi~~ag~~~~-~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~------~~-~~- 141 (236)
T 3e8x_A 77 ------DFSHAFASIDAVVFAAGSGPH-TGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP------DQ-GP- 141 (236)
T ss_dssp ------CCGGGGTTCSEEEECCCCCTT-SCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG------GG-SC-
T ss_pred ------HHHHHHcCCCEEEECCCCCCC-CCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC------CC-Ch-
Confidence 122345689999999997643 4567788999999999999998888899999999544321 11 00
Q ss_pred CcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCccc
Q psy4557 476 DFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTP 555 (958)
Q Consensus 476 ~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~p 555 (958)
.+.+.|+.||+.+|.+++ +.|++++++|||.++|+...+.... .+......++++
T Consensus 142 ------~~~~~Y~~sK~~~e~~~~---~~gi~~~~lrpg~v~~~~~~~~~~~----------------~~~~~~~~~~i~ 196 (236)
T 3e8x_A 142 ------MNMRHYLVAKRLADDELK---RSSLDYTIVRPGPLSNEESTGKVTV----------------SPHFSEITRSIT 196 (236)
T ss_dssp ------GGGHHHHHHHHHHHHHHH---HSSSEEEEEEECSEECSCCCSEEEE----------------ESSCSCCCCCEE
T ss_pred ------hhhhhHHHHHHHHHHHHH---HCCCCEEEEeCCcccCCCCCCeEEe----------------ccCCCcccCcEe
Confidence 234689999999999986 5799999999999999875443221 123334578999
Q ss_pred HHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHH
Q psy4557 556 VDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLN 595 (958)
Q Consensus 556 VD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~ 595 (958)
++++|++++.++..+...+++||+.++ +.++.|+++.+.
T Consensus 197 ~~Dva~~~~~~~~~~~~~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 197 RHDVAKVIAELVDQQHTIGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp HHHHHHHHHHHTTCGGGTTEEEEEEEC-SEEHHHHHHTC-
T ss_pred HHHHHHHHHHHhcCccccCCeEEEeCC-CcCHHHHHHHhc
Confidence 999999999999877667899999887 699999987653
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=212.80 Aligned_cols=235 Identities=16% Similarity=0.091 Sum_probs=162.6
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||+||+++|+++ +.+|++++|..... ++. .|
T Consensus 2 kILVTGatGfIG~~L~~~L~~~-G~~V~~l~R~~~~~------------------------~~~---~~----------- 42 (298)
T 4b4o_A 2 RVLVGGGTGFIGTALTQLLNAR-GHEVTLVSRKPGPG------------------------RIT---WD----------- 42 (298)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCTT------------------------EEE---HH-----------
T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCcC------------------------eee---cc-----------
Confidence 6999999999999999999976 46899999964321 111 01
Q ss_pred HHHHHHhcccCEEEEccccc--Cccc----C-hHHHHhhhHHHHHHHHHhhccCCC--ccEEEEecccccCCCCCC-Ccc
Q psy4557 401 DEYVSLSYEIDMIIHAAAFV--NLIL----P-YNALYKSNVLATKNLIEFSFLNKI--KSFHYVSTDSIYPSTSEN-FQE 470 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v--~~~~----~-~~~~~~~NV~gt~~ll~~a~~~~~--k~~~~vST~~v~~~~~~~-~~e 470 (958)
+........+|.|||+|+.. +... . ...+...|+.||++|+++|...+. +.|+|+||.++||..... ..|
T Consensus 43 ~~~~~~l~~~d~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E 122 (298)
T 4b4o_A 43 ELAASGLPSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDE 122 (298)
T ss_dssp HHHHHCCCSCSEEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCT
T ss_pred hhhHhhccCCCEEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccc
Confidence 11112235789999999852 2211 1 235678899999999999876654 458889999999875433 223
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---CC
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---DI 547 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~~ 547 (958)
+. +..+.+.|+.+|...|.... ....|++++++|++.|||+.. ..+..++.. ...|..+ +.
T Consensus 123 ~~-------p~~~~~~~~~~~~~~e~~~~-~~~~~~~~~~~r~~~v~g~~~-------~~~~~~~~~-~~~~~~~~~g~g 186 (298)
T 4b4o_A 123 DS-------PGGDFDFFSNLVTKWEAAAR-LPGDSTRQVVVRSGVVLGRGG-------GAMGHMLLP-FRLGLGGPIGSG 186 (298)
T ss_dssp TC-------CCSCSSHHHHHHHHHHHHHC-CSSSSSEEEEEEECEEECTTS-------HHHHHHHHH-HHTTCCCCBTTS
T ss_pred cC-------CccccchhHHHHHHHHHHHH-hhccCCceeeeeeeeEEcCCC-------CchhHHHHH-HhcCCcceeccc
Confidence 21 22344567777777776432 345689999999999999852 123333332 3344333 33
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHH
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHK 612 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~ 612 (958)
+..++|++||+++++++.+..++.. ..+||+++|+++++.|+.+.+.+. |.+. .+|...|.-+
T Consensus 187 ~~~~~~ihv~Dva~a~~~~~~~~~~-~g~yn~~~~~~~t~~e~~~~ia~~lgrp~-~~pvP~~~~~ 250 (298)
T 4b4o_A 187 HQFFPWIHIGDLAGILTHALEANHV-HGVLNGVAPSSATNAEFAQTFGAALGRRA-FIPLPSAVVQ 250 (298)
T ss_dssp CSBCCEEEHHHHHHHHHHHHHCTTC-CEEEEESCSCCCBHHHHHHHHHHHHTCCC-CCCBCHHHHH
T ss_pred CceeecCcHHHHHHHHHHHHhCCCC-CCeEEEECCCccCHHHHHHHHHHHhCcCC-cccCCHHHHH
Confidence 4679999999999999998876643 559999999999999999998764 6543 3455567654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=212.35 Aligned_cols=227 Identities=15% Similarity=0.228 Sum_probs=170.6
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++++++|++.++.+|+|++|..+... .....+++++.+|++ +.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~------------------~~~~~~v~~~~~D~~-------d~ 56 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVP------------------DDWRGKVSVRQLDYF-------NQ 56 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSC------------------GGGBTTBEEEECCTT-------CH
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHH------------------HhhhCCCEEEEcCCC-------CH
Confidence 69999999999999999988765789999999643211 001357899999987 34
Q ss_pred HHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCCC
Q psy4557 401 DEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDF 480 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~ 480 (958)
+.+..+.+++|+|||+|+..+. ...|+.++++++++|.+.++++|+|+||.+..
T Consensus 57 ~~l~~~~~~~d~vi~~a~~~~~-------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~~------------------- 110 (289)
T 3e48_A 57 ESMVEAFKGMDTVVFIPSIIHP-------SFKRIPEVENLVYAAKQSGVAHIIFIGYYADQ------------------- 110 (289)
T ss_dssp HHHHHHTTTCSEEEECCCCCCS-------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCCS-------------------
T ss_pred HHHHHHHhCCCEEEEeCCCCcc-------chhhHHHHHHHHHHHHHcCCCEEEEEcccCCC-------------------
Confidence 7788888999999999997543 23589999999999999999999999994320
Q ss_pred CCCCCChhHHHH--HHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhC--CcCCCCCcCCcccH
Q psy4557 481 MTTTSGYGQSKI--VSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLG--YAPDIDWYLEFTPV 556 (958)
Q Consensus 481 ~~~~~gY~~SK~--~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g--~~P~~~~~~~~~pV 556 (958)
..++|..+|+ .+|+.+. +.|++++|+|||.++|+. ..++..+ ...+ ..|..+..++|+++
T Consensus 111 --~~~~~~~~~~~~~~e~~~~---~~g~~~~ilrp~~~~~~~-------~~~~~~~----~~~~~~~~~~g~~~~~~i~~ 174 (289)
T 3e48_A 111 --HNNPFHMSPYFGYASRLLS---TSGIDYTYVRMAMYMDPL-------KPYLPEL----MNMHKLIYPAGDGRINYITR 174 (289)
T ss_dssp --TTCCSTTHHHHHHHHHHHH---HHCCEEEEEEECEESTTH-------HHHHHHH----HHHTEECCCCTTCEEEEECH
T ss_pred --CCCCCccchhHHHHHHHHH---HcCCCEEEEecccccccc-------HHHHHHH----HHCCCEecCCCCceeeeEEH
Confidence 0112334443 3444433 459999999999999852 1222222 2222 23445567899999
Q ss_pred HHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCC--ccccChHHHHHHHhc
Q psy4557 557 DFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYN--IKTVPYEKWFHKLNK 615 (958)
Q Consensus 557 D~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~--~~~v~~~eW~~~~~~ 615 (958)
|++|++++.+...+...+++||+. +..+++.|+.+.+.+. |.+ +..+|.++|.+.+..
T Consensus 175 ~Dva~~~~~~l~~~~~~g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 235 (289)
T 3e48_A 175 NDIARGVIAIIKNPDTWGKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDE 235 (289)
T ss_dssp HHHHHHHHHHHHCGGGTTCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCcCCceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcC
Confidence 999999999988765558899999 9999999999999764 664 568999999887643
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=209.27 Aligned_cols=221 Identities=7% Similarity=-0.049 Sum_probs=153.9
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|+++|+++ +.+|++++|.... +... ...++.++.+|++.+.
T Consensus 2 kilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~------~~~~------------~~~~~~~~~~D~~d~~------ 56 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRR-GHEVLAVVRDPQK------AADR------------LGATVATLVKEPLVLT------ 56 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHH------HHHH------------TCTTSEEEECCGGGCC------
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-CCEEEEEEecccc------cccc------------cCCCceEEeccccccc------
Confidence 5999999999999999999987 4799999995321 1111 1257889999998642
Q ss_pred HHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCCC
Q psy4557 401 DEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDF 480 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~ 480 (958)
. ....++|+|||+|+.... . .....|+.+++++++.|.+.+ ++|+|+||.+++.......... .+.+..
T Consensus 57 -~--~~~~~~d~vi~~ag~~~~-~---~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~---~~~~~~ 125 (224)
T 3h2s_A 57 -E--ADLDSVDAVVDALSVPWG-S---GRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMI---LDFPES 125 (224)
T ss_dssp -H--HHHTTCSEEEECCCCCTT-S---SCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGG---GGCCGG
T ss_pred -H--hhcccCCEEEECCccCCC-c---chhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCcccc---ccCCCC
Confidence 2 455789999999998621 1 124679999999999999888 9999999986654322211000 111111
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHH
Q psy4557 481 MTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLT 560 (958)
Q Consensus 481 ~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va 560 (958)
..+.+.|+.||+.+|.+.....+.|++++++|||.++|+.....+.. ....++..+...++++++++|
T Consensus 126 ~~~~~~y~~sK~~~e~~~~~~~~~~i~~~ivrp~~v~g~~~~~~~~~------------~~~~~~~~~~~~~~i~~~DvA 193 (224)
T 3h2s_A 126 AASQPWYDGALYQYYEYQFLQMNANVNWIGISPSEAFPSGPATSYVA------------GKDTLLVGEDGQSHITTGNMA 193 (224)
T ss_dssp GGGSTTHHHHHHHHHHHHHHTTCTTSCEEEEEECSBCCCCCCCCEEE------------ESSBCCCCTTSCCBCCHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHhcCCCcEEEEcCccccCCCcccCcee------------cccccccCCCCCceEeHHHHH
Confidence 23467899999999966444456799999999999999843211110 011122223456899999999
Q ss_pred HHHHHHhcCcCCCCceEEecCCCCCCHHH
Q psy4557 561 KSLVQLTTNVNNANKIYNFINTNPIHIKT 589 (958)
Q Consensus 561 ~aiv~l~~~~~~~~~v~h~~n~~~~~~~~ 589 (958)
++++.+..++...+++|++.+..+.++.+
T Consensus 194 ~~~~~~l~~~~~~g~~~~~~~~~~~~~~~ 222 (224)
T 3h2s_A 194 LAILDQLEHPTAIRDRIVVRDADLEHHHH 222 (224)
T ss_dssp HHHHHHHHSCCCTTSEEEEEECC------
T ss_pred HHHHHHhcCccccCCEEEEecCcchhccc
Confidence 99999998888789999999887776654
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-22 Score=213.48 Aligned_cols=223 Identities=19% Similarity=0.231 Sum_probs=164.1
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|+++|++ +.+|+++.|..... .+ +.+|++ +.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~--g~~V~~~~r~~~~~-----------------------~~---~~~Dl~-------~~ 46 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLSE--RHEVIKVYNSSEIQ-----------------------GG---YKLDLT-------DF 46 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHTT--TSCEEEEESSSCCT-----------------------TC---EECCTT-------SH
T ss_pred EEEEECCCChhHHHHHHHHhc--CCeEEEecCCCcCC-----------------------CC---ceeccC-------CH
Confidence 699999999999999999994 47899999864310 11 567876 34
Q ss_pred HHHHHHhcc--cCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCccccccc
Q psy4557 401 DEYVSLSYE--IDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVA 475 (958)
Q Consensus 401 ~~~~~l~~~--vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~ 475 (958)
+.+..+..+ +|+|||+|+..+.. ..+...+++|+.|+.+++++|...+. +|+|+||.++|+....++.|+.
T Consensus 47 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~~~~~e~~--- 122 (273)
T 2ggs_A 47 PRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEKGNYKEED--- 122 (273)
T ss_dssp HHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSSCSBCTTS---
T ss_pred HHHHHHHHhcCCCEEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCCCCcCCCC---
Confidence 566666654 99999999987642 35667788999999999999988775 8999999999975433333332
Q ss_pred CcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCccc
Q psy4557 476 DFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTP 555 (958)
Q Consensus 476 ~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~p 555 (958)
+..+.+.|+.||+.+|++++. ++++++||+.|||+. .+...+++....-...+-.....++++
T Consensus 123 ----~~~~~~~Y~~sK~~~e~~~~~-----~~~~~iR~~~v~G~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (273)
T 2ggs_A 123 ----IPNPINYYGLSKLLGETFALQ-----DDSLIIRTSGIFRNK--------GFPIYVYKTLKEGKTVFAFKGYYSPIS 185 (273)
T ss_dssp ----CCCCSSHHHHHHHHHHHHHCC-----TTCEEEEECCCBSSS--------SHHHHHHHHHHTTCCEEEESCEECCCB
T ss_pred ----CCCCCCHHHHHHHHHHHHHhC-----CCeEEEecccccccc--------HHHHHHHHHHHcCCCEEeecCCCCceE
Confidence 224567899999999999865 788999999999821 122333333222111111111578999
Q ss_pred HHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCcc
Q psy4557 556 VDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIK 602 (958)
Q Consensus 556 VD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~ 602 (958)
++++|++++.++.... +.+||+.+ .++++.|+.+.+.+. |.+.+
T Consensus 186 ~~dva~~i~~~~~~~~--~g~~~i~~-~~~s~~e~~~~~~~~~g~~~~ 230 (273)
T 2ggs_A 186 ARKLASAILELLELRK--TGIIHVAG-ERISRFELALKIKEKFNLPGE 230 (273)
T ss_dssp HHHHHHHHHHHHHHTC--CEEEECCC-CCEEHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHhcCc--CCeEEECC-CcccHHHHHHHHHHHhCCChh
Confidence 9999999999886543 45999999 999999999998764 66543
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-22 Score=213.85 Aligned_cols=186 Identities=16% Similarity=0.169 Sum_probs=152.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
|++|+++||||++|||++++++|+++|++|++++|+.++.. ...+.++.+|++|.+++.++++ +
T Consensus 1 m~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~-------~ 64 (267)
T 3rft_A 1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVA-------G 64 (267)
T ss_dssp CCEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHT-------T
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHc-------C
Confidence 35789999999999999999999999999999999975432 3568899999999999887775 6
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc------------CCCC
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV------------RPFA 861 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~------------~~~~ 861 (958)
+|+||||||+. +.+.|++++++|+.|++.+++++.+ .+.++||++||..+. .+.+
T Consensus 65 ~D~vi~~Ag~~--------~~~~~~~~~~~N~~g~~~l~~a~~~-----~~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~ 131 (267)
T 3rft_A 65 CDGIVHLGGIS--------VEKPFEQILQGNIIGLYNLYEAARA-----HGQPRIVFASSNHTIGYYPQTERLGPDVPAR 131 (267)
T ss_dssp CSEEEECCSCC--------SCCCHHHHHHHHTHHHHHHHHHHHH-----TTCCEEEEEEEGGGGTTSBTTSCBCTTSCCC
T ss_pred CCEEEECCCCc--------CcCCHHHHHHHHHHHHHHHHHHHHH-----cCCCEEEEEcchHHhCCCCCCCCCCCCCCCC
Confidence 89999999984 2345889999999999999998833 245899999998876 3445
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
....|++||++.+.+++.++.++ |+++++|.||.+.+++.... .. ..++.++++++.+..++..+
T Consensus 132 ~~~~Y~~sK~~~e~~~~~~a~~~---g~~~~~vr~~~v~~~~~~~~----~~--------~~~~~~~d~a~~~~~~~~~~ 196 (267)
T 3rft_A 132 PDGLYGVSKCFGENLARMYFDKF---GQETALVRIGSCTPEPNNYR----ML--------STWFSHDDFVSLIEAVFRAP 196 (267)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECBCSSSCCSTT----HH--------HHBCCHHHHHHHHHHHHHCS
T ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCeEEEEEeecccCCCCCCC----ce--------eeEEcHHHHHHHHHHHHhCC
Confidence 66889999999999999999886 79999999999998864321 11 12367899999999887765
Q ss_pred CC
Q psy4557 942 SH 943 (958)
Q Consensus 942 ~~ 943 (958)
..
T Consensus 197 ~~ 198 (267)
T 3rft_A 197 VL 198 (267)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=202.66 Aligned_cols=216 Identities=11% Similarity=0.018 Sum_probs=141.2
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|+++|++++ .+|++++|..+. +.. ...++.++.+|++.+.
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~------~~~-------------~~~~~~~~~~D~~d~~------ 55 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRG-HEVTAIVRNAGK------ITQ-------------THKDINILQKDIFDLT------ 55 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCSHH------HHH-------------HCSSSEEEECCGGGCC------
T ss_pred eEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcCchh------hhh-------------ccCCCeEEeccccChh------
Confidence 69999999999999999999874 799999996432 111 0147889999998642
Q ss_pred HHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCC-CcccccccCcCC
Q psy4557 401 DEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDYTVADFDD 479 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~-~~e~~~~~~~~~ 479 (958)
. .....+|+|||+|+.... ....|+.+++++++.|++.+.++|+|+||.+++...... ... .+.
T Consensus 56 -~--~~~~~~d~vi~~ag~~~~------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~------~~~ 120 (221)
T 3ew7_A 56 -L--SDLSDQNVVVDAYGISPD------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLL------ESK 120 (221)
T ss_dssp -H--HHHTTCSEEEECCCSSTT------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC---------------------
T ss_pred -h--hhhcCCCEEEECCcCCcc------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCcccc------ccC
Confidence 2 345789999999997321 246799999999999998888999999998766432211 111 111
Q ss_pred CCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCC-CCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHH
Q psy4557 480 FMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLE-FKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVD 557 (958)
Q Consensus 480 ~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~-~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD 557 (958)
+..+.+.|+.+|+.+|.+..... ..|++++++|||.++|+.. .+.+ .+.. ..++.......+++++
T Consensus 121 ~~~~~~~y~~~k~~~e~~~~~~~~~~gi~~~ivrp~~v~g~~~~~~~~-------~~~~-----~~~~~~~~~~~~i~~~ 188 (221)
T 3ew7_A 121 GLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPGERTGDY-------QIGK-----DHLLFGSDGNSFISME 188 (221)
T ss_dssp ----CCCSCCHHHHHHHHHHHHTTTTTSCEEEEECSSCCCCC---------------------------------CCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhccCccEEEEeCcceecCCCccCce-------Eecc-----ccceecCCCCceEeHH
Confidence 22355789999999999743333 6799999999999999832 1111 1000 0111111123689999
Q ss_pred HHHHHHHHHhcCcCCCCceEEecCCCCCCHHH
Q psy4557 558 FLTKSLVQLTTNVNNANKIYNFINTNPIHIKT 589 (958)
Q Consensus 558 ~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~ 589 (958)
++|++++.+..++...+++||+.+|.+.+.+|
T Consensus 189 Dva~~~~~~l~~~~~~g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 189 DYAIAVLDEIERPNHLNEHFTVAGKLEHHHHH 220 (221)
T ss_dssp HHHHHHHHHHHSCSCTTSEEECCC--------
T ss_pred HHHHHHHHHHhCccccCCEEEECCCCcccccc
Confidence 99999999998888889999999988877654
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=206.56 Aligned_cols=192 Identities=16% Similarity=0.179 Sum_probs=149.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcE-EEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSI-IVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~-~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..++||+++||||+||||++++++|+++|++|++++|+.++++++... .+ .++.+|++ +.+.+.
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~------~~~~~~~~Dl~---------~~~~~~ 81 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER------GASDIVVANLE---------EDFSHA 81 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT------TCSEEEECCTT---------SCCGGG
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC------CCceEEEcccH---------HHHHHH
Confidence 467899999999999999999999999999999999999888765432 46 78899998 344556
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC---CCChhhh
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF---AGLAVYT 867 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~---~~~~~Y~ 867 (958)
++++|+||||||.... ++|+..+++|+.|+..+++++.. . +.++||++||..+..+. +....|+
T Consensus 82 ~~~~D~vi~~ag~~~~--------~~~~~~~~~n~~~~~~l~~a~~~----~-~~~~iv~~SS~~~~~~~~~~~~~~~Y~ 148 (236)
T 3e8x_A 82 FASIDAVVFAAGSGPH--------TGADKTILIDLWGAIKTIQEAEK----R-GIKRFIMVSSVGTVDPDQGPMNMRHYL 148 (236)
T ss_dssp GTTCSEEEECCCCCTT--------SCHHHHHHTTTHHHHHHHHHHHH----H-TCCEEEEECCTTCSCGGGSCGGGHHHH
T ss_pred HcCCCEEEECCCCCCC--------CCccccchhhHHHHHHHHHHHHH----c-CCCEEEEEecCCCCCCCCChhhhhhHH
Confidence 6789999999997532 45889999999999999988743 2 35799999998877654 4678899
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.+|++++.+.+ ..||++++|+||++.+++...... ..........++.++|+|+++++++.++.
T Consensus 149 ~sK~~~e~~~~-------~~gi~~~~lrpg~v~~~~~~~~~~----~~~~~~~~~~~i~~~Dva~~~~~~~~~~~ 212 (236)
T 3e8x_A 149 VAKRLADDELK-------RSSLDYTIVRPGPLSNEESTGKVT----VSPHFSEITRSITRHDVAKVIAELVDQQH 212 (236)
T ss_dssp HHHHHHHHHHH-------HSSSEEEEEEECSEECSCCCSEEE----EESSCSCCCCCEEHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHH-------HCCCCEEEEeCCcccCCCCCCeEE----eccCCCcccCcEeHHHHHHHHHHHhcCcc
Confidence 99999999876 569999999999999986432110 00011122457889999999999887764
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=205.79 Aligned_cols=226 Identities=16% Similarity=0.100 Sum_probs=164.2
Q ss_pred cCceEEeccccchHHHHHHHHhcCC-CCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDT-KCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~-~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++|||||||||||++|+++|++++ +.+|+++.|... ++.+ ...++.++.+|++
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~------~~~~-------------~~~~~~~~~~D~~------ 58 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ------GKEK-------------IGGEADVFIGDIT------ 58 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHH------HHHH-------------TTCCTTEEECCTT------
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCC------chhh-------------cCCCeeEEEecCC------
Confidence 4689999999999999999999885 689999998521 1111 0245678889987
Q ss_pred CcHHHHHHHhcccCEEEEcccccCccc----------C------hHHHHhhhHHHHHHHHHhhccCCCccEEEEeccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLIL----------P------YNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY 461 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~~----------~------~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~ 461 (958)
+.+.+..+.+++|+|||+|+...... + .....++|+.|+.++++.|.+.+.++|+|+||.+++
T Consensus 59 -d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~ 137 (253)
T 1xq6_A 59 -DADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGT 137 (253)
T ss_dssp -SHHHHHHHHTTCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTT
T ss_pred -CHHHHHHHHcCCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCC
Confidence 34678888889999999999754211 1 123468999999999999988788899999998875
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL 541 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~ 541 (958)
.... +... .....|..||+.+|.+++. .|++++++|||.++|+........... .
T Consensus 138 ~~~~-------~~~~-----~~~~~y~~sK~~~e~~~~~---~~i~~~~vrpg~v~~~~~~~~~~~~~~----------~ 192 (253)
T 1xq6_A 138 NPDH-------PLNK-----LGNGNILVWKRKAEQYLAD---SGTPYTIIRAGGLLDKEGGVRELLVGK----------D 192 (253)
T ss_dssp CTTC-------GGGG-----GGGCCHHHHHHHHHHHHHT---SSSCEEEEEECEEECSCSSSSCEEEES----------T
T ss_pred CCCC-------cccc-----ccchhHHHHHHHHHHHHHh---CCCceEEEecceeecCCcchhhhhccC----------C
Confidence 3210 0000 1124689999999998853 699999999999999864211000000 0
Q ss_pred CCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCC---CCCHHHHHHHHHHc
Q psy4557 542 GYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTN---PIHIKTLVSVLNTY 597 (958)
Q Consensus 542 g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~---~~~~~~l~~~l~~~ 597 (958)
..++ .....+++++++|++++.+...+...+++||+.++. ++++.|+.+.+.+.
T Consensus 193 ~~~~--~~~~~~~~~~Dva~~~~~~~~~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~ 249 (253)
T 1xq6_A 193 DELL--QTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQV 249 (253)
T ss_dssp TGGG--GSSCCEEEHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHHTC
T ss_pred cCCc--CCCCcEEcHHHHHHHHHHHHcCccccCCEEEecCCCcCCCCCHHHHHHHHHHH
Confidence 0001 123568999999999999987765567899999864 58999999998764
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-21 Score=202.62 Aligned_cols=202 Identities=17% Similarity=0.065 Sum_probs=150.4
Q ss_pred cCceEEeccccchHHHHHHHHhcCCC-CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTK-CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++|||||||||+|++++++|++++. .+|+++.|.... ...++.++.+|++.+
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~----------------------~~~~~~~~~~D~~~~---- 58 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------------------EHPRLDNPVGPLAEL---- 58 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------------------CCTTEECCBSCHHHH----
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc----------------------cCCCceEEeccccCH----
Confidence 35799999999999999999998765 389999986542 024678888898642
Q ss_pred CcHHHHHHHhcccCEEEEcccccCc-ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccC
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNL-ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVAD 476 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~-~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~ 476 (958)
+.+..+. +|+|||+|+.... ..+.+.++++|+.++.+++++|.+.+.++|+|+||.++|+.
T Consensus 59 ---~~~~~~~--~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~------------- 120 (215)
T 2a35_A 59 ---LPQLDGS--IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------- 120 (215)
T ss_dssp ---GGGCCSC--CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------
T ss_pred ---HHHHHhh--hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC-------------
Confidence 2222223 8999999997543 34567788999999999999999888889999999988752
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHhhCCCC-EEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCccc
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAGQMGLP-VSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTP 555 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp-~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~p 555 (958)
+.+.|+.||+.+|++++. .|++ ++++|||.+||+.....+ ...+. ....|-.+...++++
T Consensus 121 ------~~~~y~~sK~~~e~~~~~---~~~~~~~~vrp~~v~g~~~~~~~-----~~~~~-----~~~~~~~~~~~~~i~ 181 (215)
T 2a35_A 121 ------SSIFYNRVKGELEQALQE---QGWPQLTIARPSLLFGPREEFRL-----AEILA-----APIARILPGKYHGIE 181 (215)
T ss_dssp ------CSSHHHHHHHHHHHHHTT---SCCSEEEEEECCSEESTTSCEEG-----GGGTT-----CCCC----CHHHHHH
T ss_pred ------CccHHHHHHHHHHHHHHH---cCCCeEEEEeCceeeCCCCcchH-----HHHHH-----HhhhhccCCCcCcEe
Confidence 135799999999999864 4899 999999999998653211 11110 111221223568999
Q ss_pred HHHHHHHHHHHhcCcCCCCceEEecCCCCC
Q psy4557 556 VDFLTKSLVQLTTNVNNANKIYNFINTNPI 585 (958)
Q Consensus 556 VD~va~aiv~l~~~~~~~~~v~h~~n~~~~ 585 (958)
+|++|++++.+..++. +.+||+.++.++
T Consensus 182 ~~Dva~~~~~~~~~~~--~~~~~i~~~~~~ 209 (215)
T 2a35_A 182 ACDLARALWRLALEEG--KGVRFVESDELR 209 (215)
T ss_dssp HHHHHHHHHHHHTCCC--SEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHhcCC--CCceEEcHHHHH
Confidence 9999999999987654 689999875443
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-21 Score=219.40 Aligned_cols=230 Identities=15% Similarity=0.109 Sum_probs=164.6
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEeccc-CCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSD-LSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gD-l~~~~lGL 397 (958)
.++|||||||||||++|+++|+++ +.+|++++|..+.... +.+. . ..++.++.+| ++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~-~~l~----~----------~~~v~~v~~D~l~------ 62 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAV-GHHVRAQVHSLKGLIA-EELQ----A----------IPNVTLFQGPLLN------ 62 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCSCSHHH-HHHH----T----------STTEEEEESCCTT------
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCCChhhH-HHHh----h----------cCCcEEEECCccC------
Confidence 357999999999999999999975 4789999997654211 1111 0 1368889999 86
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCC-CccEEEEeccc--ccCCCCCCCcccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDS--IYPSTSENFQEDYTV 474 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~--v~~~~~~~~~e~~~~ 474 (958)
+.+.+..+...+|+|||+++... ...|+.+ ++++++|.+.+ +++|+|+||.+ +|+.
T Consensus 63 -d~~~l~~~~~~~d~Vi~~a~~~~--------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~----------- 121 (352)
T 1xgk_A 63 -NVPLMDTLFEGAHLAFINTTSQA--------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGP----------- 121 (352)
T ss_dssp -CHHHHHHHHTTCSEEEECCCSTT--------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSS-----------
T ss_pred -CHHHHHHHHhcCCEEEEcCCCCC--------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCC-----------
Confidence 34667778889999999997532 1357777 99999998877 89999999975 2221
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH-HHHhCCc----CC-CC
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA-ITRLGYA----PD-ID 548 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~-~~~~g~~----P~-~~ 548 (958)
.+.+.|..||+.+|++++. .|++++|+||| +||+...+... .+++. ....|.. |. .+
T Consensus 122 -------~~~~~y~~sK~~~E~~~~~---~gi~~~ivrpg-~~g~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~ 184 (352)
T 1xgk_A 122 -------WPAVPMWAPKFTVENYVRQ---LGLPSTFVYAG-IYNNNFTSLPY------PLFQMELMPDGTFEWHAPFDPD 184 (352)
T ss_dssp -------CCCCTTTHHHHHHHHHHHT---SSSCEEEEEEC-EEGGGCBSSSC------SSCBEEECTTSCEEEEESSCTT
T ss_pred -------CCCccHHHHHHHHHHHHHH---cCCCEEEEecc-eecCCchhccc------ccccccccCCCceEEeeccCCC
Confidence 1235799999999999865 39999999988 67876543211 00000 0112321 21 34
Q ss_pred CcCCcccH-HHHHHHHHHHhcCcC--CCCceEEecCCCCCCHHHHHHHHHH-cCCCccccChHHH
Q psy4557 549 WYLEFTPV-DFLTKSLVQLTTNVN--NANKIYNFINTNPIHIKTLVSVLNT-YGYNIKTVPYEKW 609 (958)
Q Consensus 549 ~~~~~~pV-D~va~aiv~l~~~~~--~~~~v~h~~n~~~~~~~~l~~~l~~-~g~~~~~v~~~eW 609 (958)
..+++++| |++|++++.+...+. ..+++||+.+ ..+++.|+.+.+.+ .|.+++.++...|
T Consensus 185 ~~~~~i~v~~Dva~ai~~~l~~~~~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~~ 248 (352)
T 1xgk_A 185 IPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKV 248 (352)
T ss_dssp SCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSSC
T ss_pred CceeeEecHHHHHHHHHHHHhCCchhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCHH
Confidence 56899999 999999999886532 2578999995 67999999999875 4776655544444
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=206.73 Aligned_cols=235 Identities=14% Similarity=0.048 Sum_probs=173.6
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||+|++++++|++++..+|+++.|....... ..+. ..+++++.+|++.
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~-~~l~---------------~~~~~~~~~D~~d------- 62 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA-KELR---------------LQGAEVVQGDQDD------- 62 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH-HHHH---------------HTTCEEEECCTTC-------
T ss_pred CEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH-HHHH---------------HCCCEEEEecCCC-------
Confidence 5799999999999999999998765799999997553211 1111 1357888999873
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDD 479 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~ 479 (958)
.+.+..+..++|+|||+|+..... ....|+.+++++++.|.+.++++|+|+||.++++... .
T Consensus 63 ~~~l~~~~~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~-----~-------- 124 (299)
T 2wm3_A 63 QVIMELALNGAYATFIVTNYWESC-----SQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTA-----G-------- 124 (299)
T ss_dssp HHHHHHHHTTCSEEEECCCHHHHT-----CHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTT-----T--------
T ss_pred HHHHHHHHhcCCEEEEeCCCCccc-----cchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCC-----C--------
Confidence 467888888999999999853211 1346899999999999888889999999888775210 0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhC-----CcCCCCCcCCcc
Q psy4557 480 FMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLG-----YAPDIDWYLEFT 554 (958)
Q Consensus 480 ~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g-----~~P~~~~~~~~~ 554 (958)
.+...|..||+.+|++++. .|++++++|||.++|+....... .....| ..|..+..++|+
T Consensus 125 --~~~~~y~~sK~~~e~~~~~---~gi~~~ilrp~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~i 189 (299)
T 2wm3_A 125 --RLAAAHFDGKGEVEEYFRD---IGVPMTSVRLPCYFENLLSHFLP----------QKAPDGKSYLLSLPTGDVPMDGM 189 (299)
T ss_dssp --SCCCHHHHHHHHHHHHHHH---HTCCEEEEECCEEGGGGGTTTCC----------EECTTSSSEEECCCCTTSCEEEE
T ss_pred --cccCchhhHHHHHHHHHHH---CCCCEEEEeecHHhhhchhhcCC----------cccCCCCEEEEEecCCCCcccee
Confidence 1235799999999999864 48999999999999964321100 001122 134445668999
Q ss_pred cHHHHHHHHHHHhcCcC-CCCceEEecCCCCCCHHHHHHHHHH-cCCCcc--ccChHHHHH
Q psy4557 555 PVDFLTKSLVQLTTNVN-NANKIYNFINTNPIHIKTLVSVLNT-YGYNIK--TVPYEKWFH 611 (958)
Q Consensus 555 pVD~va~aiv~l~~~~~-~~~~v~h~~n~~~~~~~~l~~~l~~-~g~~~~--~v~~~eW~~ 611 (958)
+++++|++++.+...+. ..+++||+.+ ..+++.|+.+.+.+ .|.+++ .+|.++|..
T Consensus 190 ~~~Dva~~~~~~l~~~~~~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~ 249 (299)
T 2wm3_A 190 SVSDLGPVVLSLLKMPEKYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPEDYEK 249 (299)
T ss_dssp CGGGHHHHHHHHHHSHHHHTTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCCCTHHHHT
T ss_pred cHHHHHHHHHHHHcChhhhCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEecCHHHHHh
Confidence 99999999999886542 2578999987 57999999999976 477654 667777754
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-21 Score=202.90 Aligned_cols=196 Identities=16% Similarity=0.195 Sum_probs=147.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++|+++||||++|||++++++|+++|+ +|++++|+.+++++.. ...+.++.+|+++.+++.++++
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~------~~~~~~~~~D~~d~~~~~~~~~------ 83 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA------YKNVNQEVVDFEKLDDYASAFQ------ 83 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG------GGGCEEEECCGGGGGGGGGGGS------
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc------cCCceEEecCcCCHHHHHHHhc------
Confidence 5789999999999999999999999999 9999999976543221 1246778999999888766553
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
++|+||||||.... .+.++..+++|+.++..+++++.+ .+.++||++||.++.. +....|+++|+
T Consensus 84 -~~d~vi~~ag~~~~-------~~~~~~~~~~n~~~~~~~~~~~~~-----~~~~~iv~~SS~~~~~--~~~~~Y~~sK~ 148 (242)
T 2bka_A 84 -GHDVGFCCLGTTRG-------KAGAEGFVRVDRDYVLKSAELAKA-----GGCKHFNLLSSKGADK--SSNFLYLQVKG 148 (242)
T ss_dssp -SCSEEEECCCCCHH-------HHHHHHHHHHHTHHHHHHHHHHHH-----TTCCEEEEECCTTCCT--TCSSHHHHHHH
T ss_pred -CCCEEEECCCcccc-------cCCcccceeeeHHHHHHHHHHHHH-----CCCCEEEEEccCcCCC--CCcchHHHHHH
Confidence 79999999997532 245789999999999888776432 2357999999998765 34567999999
Q ss_pred HHHHHHHHHHHHhCCCCc-EEEEEECCcccCCCCCCCCChhhhhhh-c-cc---cCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 872 FIEGISGALRQEVSDRNI-KVTCIQAGDVKTELLSHSTDRDVVDKY-D-IS---KAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 872 a~~~l~~~la~el~~~gI-rv~~v~PG~v~T~~~~~~~~~~~~~~~-~-~~---~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+++.+++.+ ++ ++++|+||++.|++............. . .+ ...+++.++|+|+++++++.++..
T Consensus 149 ~~e~~~~~~-------~~~~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~ 219 (242)
T 2bka_A 149 EVEAKVEEL-------KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRD 219 (242)
T ss_dssp HHHHHHHTT-------CCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHhc-------CCCCeEEEcCceecCCCCCCcHHHHHHHHhhcccCccccCCcccCHHHHHHHHHHHHhCccc
Confidence 999998764 45 899999999999974321111111110 0 11 122467899999999999887754
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-20 Score=191.33 Aligned_cols=181 Identities=10% Similarity=0.097 Sum_probs=139.6
Q ss_pred CEEEEEcCCchHHHHHHHHHH-HcCCeEEEEecChh-hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLV-TLGAKVVAVARRID-RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la-~~Ga~Vi~~~r~~~-~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
|+++||||++|||+++|++|+ ++|++|++++|+.+ +++++. .....+.++++|++|.++++++++ ++
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~-------~~ 74 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----IDHERVTVIEGSFQNPGXLEQAVT-------NA 74 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HTSTTEEEEECCTTCHHHHHHHHT-------TC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cCCCceEEEECCCCCHHHHHHHHc-------CC
Confidence 789999999999999999999 89999999999987 666554 234568899999999998887764 68
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh----------
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA---------- 864 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~---------- 864 (958)
|+||||||.. |+. ++.+++.|.+. +.++||++||..+..+.++..
T Consensus 75 d~vv~~ag~~-------------------n~~-----~~~~~~~~~~~-~~~~iv~iSs~~~~~~~~~~~~~~~~~~~~~ 129 (221)
T 3r6d_A 75 EVVFVGAMES-------------------GSD-----MASIVKALSRX-NIRRVIGVSMAGLSGEFPVALEKWTFDNLPI 129 (221)
T ss_dssp SEEEESCCCC-------------------HHH-----HHHHHHHHHHT-TCCEEEEEEETTTTSCSCHHHHHHHHHTSCH
T ss_pred CEEEEcCCCC-------------------Chh-----HHHHHHHHHhc-CCCeEEEEeeceecCCCCccccccccccccc
Confidence 9999999963 322 78888888743 458999999999887666544
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHh--cCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFAL--LQPS 942 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l--~~~~ 942 (958)
.|+.+|++++.+.+. .||++++|+||++.++........ ...........+.++|+|+.+++++ +++.
T Consensus 130 ~y~~~K~~~e~~~~~-------~~i~~~~vrpg~v~~~~~~~~~~~---~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~ 199 (221)
T 3r6d_A 130 SYVQGERQARNVLRE-------SNLNYTILRLTWLYNDPEXTDYEL---IPEGAQFNDAQVSREAVVKAIFDILHAADET 199 (221)
T ss_dssp HHHHHHHHHHHHHHH-------SCSEEEEEEECEEECCTTCCCCEE---ECTTSCCCCCEEEHHHHHHHHHHHHTCSCCG
T ss_pred HHHHHHHHHHHHHHh-------CCCCEEEEechhhcCCCCCcceee---ccCCccCCCceeeHHHHHHHHHHHHHhcChh
Confidence 899999999988763 699999999999998732211100 0000111123578999999999998 7665
Q ss_pred C
Q psy4557 943 H 943 (958)
Q Consensus 943 ~ 943 (958)
.
T Consensus 200 ~ 200 (221)
T 3r6d_A 200 P 200 (221)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-20 Score=188.49 Aligned_cols=202 Identities=11% Similarity=0.029 Sum_probs=150.7
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||+|++|+++|++++ .+|+++.|...... .....++.++.+|++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~------------------~~~~~~~~~~~~D~~~------- 57 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLP------------------SEGPRPAHVVVGDVLQ------- 57 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSC------------------SSSCCCSEEEESCTTS-------
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhcc------------------cccCCceEEEEecCCC-------
Confidence 579999999999999999999874 78999998643210 0013578889999863
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDD 479 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~ 479 (958)
.+.+..+.+++|+|||+|+...... ...+|+.++.+++++|.+.+.++|+|+||.++|+..... +
T Consensus 58 ~~~~~~~~~~~d~vi~~a~~~~~~~----~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----~------ 122 (206)
T 1hdo_A 58 AADVDKTVAGQDAVIVLLGTRNDLS----PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV-----P------ 122 (206)
T ss_dssp HHHHHHHHTTCSEEEECCCCTTCCS----CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCS-----C------
T ss_pred HHHHHHHHcCCCEEEECccCCCCCC----ccchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccc-----c------
Confidence 4677788889999999999765421 235899999999999988888999999999998743210 0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHH
Q psy4557 480 FMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFL 559 (958)
Q Consensus 480 ~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~v 559 (958)
.+.+.|+.+|+.+|++++ +.|++++++|||.++.....+.+.. .++..|. .++++++++
T Consensus 123 --~~~~~y~~~K~~~e~~~~---~~~i~~~~lrp~~~~~~~~~~~~~~------------~~~~~~~----~~~i~~~Dv 181 (206)
T 1hdo_A 123 --PRLQAVTDDHIRMHKVLR---ESGLKYVAVMPPHIGDQPLTGAYTV------------TLDGRGP----SRVISKHDL 181 (206)
T ss_dssp --GGGHHHHHHHHHHHHHHH---HTCSEEEEECCSEEECCCCCSCCEE------------ESSSCSS----CSEEEHHHH
T ss_pred --ccchhHHHHHHHHHHHHH---hCCCCEEEEeCCcccCCCCCcceEe------------cccCCCC----CCccCHHHH
Confidence 023579999999999984 3689999999999832221221110 0111221 478999999
Q ss_pred HHHHHHHhcCcCCCCceEEecCCC
Q psy4557 560 TKSLVQLTTNVNNANKIYNFINTN 583 (958)
Q Consensus 560 a~aiv~l~~~~~~~~~v~h~~n~~ 583 (958)
|++++.+..++...+++||+.++.
T Consensus 182 a~~~~~~~~~~~~~g~~~~i~~g~ 205 (206)
T 1hdo_A 182 GHFMLRCLTTDEYDGHSTYPSHQY 205 (206)
T ss_dssp HHHHHHTTSCSTTTTCEEEEECCC
T ss_pred HHHHHHHhcCccccccceeeeccc
Confidence 999999988766668899998763
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-20 Score=203.37 Aligned_cols=190 Identities=14% Similarity=-0.026 Sum_probs=152.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHH-HcCCeEEEEecChhh------------HHHHHHHhhcCCCcEEEEEecCCCHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLV-TLGAKVVAVARRIDR------------LENLKTSLQNAPGSIIVKKLDVTIEND 779 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la-~~Ga~Vi~~~r~~~~------------l~~~~~~l~~~~~~~~~~~~Dvs~~~~ 779 (958)
.+.+|++||||||+|||+|+|..|| +.|+.|+++++..+. ...+.+.+.+.+.++..+.||++++++
T Consensus 47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 47 AKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI 126 (401)
T ss_dssp SCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence 4578999999999999999999999 789999999886432 345566777778899999999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEccccCCC-------------cc---------------------ccCCCHHHH---HHHHH
Q psy4557 780 VKKVVREVLAELGHIDILVNNAGVMYF-------------TL---------------------MEKYKLEEW---NAMIN 822 (958)
Q Consensus 780 v~~~~~~~~~~~g~iDilInnAG~~~~-------------~~---------------------~~~~~~~~~---~~~~~ 822 (958)
++++++++.+.+|+||+||||+|.... ++ +...+.+++ .++|.
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg 206 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG 206 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence 999999999999999999999997521 01 112344554 45555
Q ss_pred HHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC--ChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCccc
Q psy4557 823 VNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG--LAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVK 900 (958)
Q Consensus 823 vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~--~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~ 900 (958)
+..++.+...+...+.|. .++++|.+|++.+....|. .++++++|++++..+|.|+.+++ ++++|+++||.+.
T Consensus 207 ~s~~s~w~~al~~a~lla---~G~siva~SYiGse~t~P~Y~~G~mG~AKaaLEa~~r~La~eL~--~~~a~v~v~~a~v 281 (401)
T 4ggo_A 207 GEDWERWIKQLSKEGLLE---EGCITLAYSYIGPEATQALYRKGTIGKAKEHLEATAHRLNKENP--SIRAFVSVNKGLV 281 (401)
T ss_dssp SHHHHHHHHHHHHTTCEE---EEEEEEEEECCCCGGGHHHHTTSHHHHHHHHHHHHHHHHHHHCT--TEEEEEEECCCCC
T ss_pred hhHHHHHHHHHHhhhccc---CCceEEEEeccCcceeecCCCccHHHHHHHHHHHHHHHHHHhcC--CCcEEEEEcCccc
Confidence 566666666666666553 4589999999998776664 45899999999999999999997 4899999999999
Q ss_pred CCCCCCC
Q psy4557 901 TELLSHS 907 (958)
Q Consensus 901 T~~~~~~ 907 (958)
|.-...-
T Consensus 282 T~AssaI 288 (401)
T 4ggo_A 282 TRASAVI 288 (401)
T ss_dssp CTTGGGS
T ss_pred cchhhcC
Confidence 9865543
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-20 Score=203.56 Aligned_cols=245 Identities=15% Similarity=0.132 Sum_probs=172.0
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChh--hHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNK--TLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~--~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++|||||||||+|+++++.|++++ .+|++++|..+.. ...+.+.. +. ..+++++.+|++.
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~D~~d----- 66 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQMLLY-FK-----------QLGAKLIEASLDD----- 66 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHHHHHHHHH-HH-----------TTTCEEECCCSSC-----
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEECCCcccchhHHHHHHH-HH-----------hCCeEEEeCCCCC-----
Confidence 579999999999999999999874 7899999976431 11112211 10 2468889999873
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCC-CccEEEEecccccCCCCCCCcccccccC
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDSIYPSTSENFQEDYTVAD 476 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~v~~~~~~~~~e~~~~~~ 476 (958)
.+.+..+.+++|+|||+|+.... ..|+.++++++++|.+.+ +++|+| |+||...... .
T Consensus 67 --~~~l~~~~~~~d~vi~~a~~~~~--------~~~~~~~~~l~~aa~~~g~v~~~v~----S~~g~~~~~~--~----- 125 (313)
T 1qyd_A 67 --HQRLVDALKQVDVVISALAGGVL--------SHHILEQLKLVEAIKEAGNIKRFLP----SEFGMDPDIM--E----- 125 (313)
T ss_dssp --HHHHHHHHTTCSEEEECCCCSSS--------STTTTTHHHHHHHHHHSCCCSEEEC----SCCSSCTTSC--C-----
T ss_pred --HHHHHHHHhCCCEEEECCccccc--------hhhHHHHHHHHHHHHhcCCCceEEe----cCCcCCcccc--c-----
Confidence 46778888899999999997543 247889999999999887 888875 3555322111 0
Q ss_pred cCCCCCC-CCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhC---CcCCCCCcCC
Q psy4557 477 FDDFMTT-TSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLG---YAPDIDWYLE 552 (958)
Q Consensus 477 ~~~~~~~-~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g---~~P~~~~~~~ 552 (958)
.+..+ .+.| .||+.+|++++ +.|++++++|||.++|..........+ ......+ ..++.+..++
T Consensus 126 --~~~~p~~~~y-~sK~~~e~~~~---~~g~~~~ilrp~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~ 193 (313)
T 1qyd_A 126 --HALQPGSITF-IDKRKVRRAIE---AASIPYTYVSSNMFAGYFAGSLAQLDG------HMMPPRDKVLIYGDGNVKGI 193 (313)
T ss_dssp --CCCSSTTHHH-HHHHHHHHHHH---HTTCCBCEEECCEEHHHHTTTSSCTTC------CSSCCSSEECCBTTSCSEEE
T ss_pred --cCCCCCcchH-HHHHHHHHHHH---hcCCCeEEEEeceeccccccccccccc------cccCCCCeEEEeCCCCceEE
Confidence 11112 3468 99999999985 358999999999998853211111000 0000111 1223345689
Q ss_pred cccHHHHHHHHHHHhcCcCCCCceEEecCC-CCCCHHHHHHHHHHc-CCC--ccccChHHHHHHHhc
Q psy4557 553 FTPVDFLTKSLVQLTTNVNNANKIYNFINT-NPIHIKTLVSVLNTY-GYN--IKTVPYEKWFHKLNK 615 (958)
Q Consensus 553 ~~pVD~va~aiv~l~~~~~~~~~v~h~~n~-~~~~~~~l~~~l~~~-g~~--~~~v~~~eW~~~~~~ 615 (958)
+++++++|++++.+...+...+++|++..+ ..+++.|+++.+.+. |.+ +..+|.++|.+.+..
T Consensus 194 ~i~~~Dva~~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 260 (313)
T 1qyd_A 194 WVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDFLADMKD 260 (313)
T ss_dssp EECHHHHHHHHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSHHHHHHHTT
T ss_pred EEEHHHHHHHHHHHHhCcccCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECCHHHHHHHHhc
Confidence 999999999999998776555788888876 689999999999764 655 567899999887644
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=192.93 Aligned_cols=217 Identities=15% Similarity=0.076 Sum_probs=156.1
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCC-eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~-~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++|||||||||||++++++|++++.. +|+++.|....... ....++.++.+|++.
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~------------------~~~~~~~~~~~D~~d----- 74 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE------------------EAYKNVNQEVVDFEK----- 74 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS------------------GGGGGCEEEECCGGG-----
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccc------------------cccCCceEEecCcCC-----
Confidence 468999999999999999999987542 89999987542110 001367888999874
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADF 477 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~ 477 (958)
.+.+..+..++|+|||||+........+.+.++|+.|+.++++.|.+.+.++|+|+||.++|+.
T Consensus 75 --~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~-------------- 138 (242)
T 2bka_A 75 --LDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS-------------- 138 (242)
T ss_dssp --GGGGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT--------------
T ss_pred --HHHHHHHhcCCCEEEECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC--------------
Confidence 3456666778999999999765444556778899999999999998888889999999988752
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhCCC-CEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccH
Q psy4557 478 DDFMTTTSGYGQSKIVSEYLVLNAGQMGL-PVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPV 556 (958)
Q Consensus 478 ~~~~~~~~gY~~SK~~aE~lv~~a~~~gl-p~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pV 556 (958)
+.+.|+.||+.+|.+++. .++ +++++|||.++|+..... . ...+.+.. .+..|.......++++
T Consensus 139 -----~~~~Y~~sK~~~e~~~~~---~~~~~~~~vrpg~v~~~~~~~~--~---~~~~~~~~--~~~~~~~~~~~~~~~~ 203 (242)
T 2bka_A 139 -----SNFLYLQVKGEVEAKVEE---LKFDRYSVFRPGVLLCDRQESR--P---GEWLVRKF--FGSLPDSWASGHSVPV 203 (242)
T ss_dssp -----CSSHHHHHHHHHHHHHHT---TCCSEEEEEECCEEECTTGGGS--H---HHHHHHHH--HCSCCTTGGGGTEEEH
T ss_pred -----CcchHHHHHHHHHHHHHh---cCCCCeEEEcCceecCCCCCCc--H---HHHHHHHh--hcccCccccCCcccCH
Confidence 124799999999999864 478 499999999999853221 1 11122211 2334432223468999
Q ss_pred HHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 557 DFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 557 D~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
|++|++++.++..+.. ...|++.+ .++.++.++
T Consensus 204 ~dva~~~~~~~~~~~~-~~~~~~~~------~~i~~~~~~ 236 (242)
T 2bka_A 204 VTVVRAMLNNVVRPRD-KQMELLEN------KAIHDLGKA 236 (242)
T ss_dssp HHHHHHHHHHHTSCCC-SSEEEEEH------HHHHHHTC-
T ss_pred HHHHHHHHHHHhCccc-cCeeEeeH------HHHHHHHHh
Confidence 9999999999876543 45666654 566665443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-20 Score=251.47 Aligned_cols=178 Identities=20% Similarity=0.173 Sum_probs=143.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCe-EEEEecChhhH---HHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAK-VVAVARRIDRL---ENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~-Vi~~~r~~~~l---~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+|+++||||++|||+++|+.|+++|++ |++++|+..+. .+..+++...+.++.++.||+++.++++++++++. .
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~-~ 1961 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEAT-Q 1961 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHH-H
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHH-h
Confidence 7899999999999999999999999997 88889986543 44455565567788899999999999999999987 4
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|+||+||||||+.....+.+++.++|++++++|+.|++++.+.+.+.|.+ .|+|||+||++|..+.++.+.|+++|
T Consensus 1962 ~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~---~g~iV~iSS~ag~~g~~g~~~Y~aaK 2038 (2512)
T 2vz8_A 1962 LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPE---LDYFVIFSSVSCGRGNAGQANYGFAN 2038 (2512)
T ss_dssp HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTT---CCEEEEECCHHHHTTCTTCHHHHHHH
T ss_pred cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCEEEEecchhhcCCCCCcHHHHHHH
Confidence 899999999999987778899999999999999999999999999998852 38999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVK 900 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~ 900 (958)
+|+.+|++.++.+ |+...++..|.+.
T Consensus 2039 aal~~l~~~rr~~----Gl~~~a~~~g~~~ 2064 (2512)
T 2vz8_A 2039 SAMERICEKRRHD----GLPGLAVQWGAIG 2064 (2512)
T ss_dssp HHHHHHHHHHHHT----TSCCCEEEECCBC
T ss_pred HHHHHHHHHHHHC----CCcEEEEEccCcC
Confidence 9999999987765 7777888877664
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-19 Score=198.89 Aligned_cols=208 Identities=16% Similarity=0.188 Sum_probs=162.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHc-CC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTL-GA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~-Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
..+++|+++||||+|+||++++++|+++ |+ +|++++|+.++..++.+.+.. .++.++.+|++|.+++.++++
T Consensus 17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~v~~~~~Dl~d~~~l~~~~~---- 90 (344)
T 2gn4_A 17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFND--PRMRFFIGDVRDLERLNYALE---- 90 (344)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCC--TTEEEEECCTTCHHHHHHHTT----
T ss_pred HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcC--CCEEEEECCCCCHHHHHHHHh----
Confidence 4578999999999999999999999999 98 999999999888877776642 468889999999988776653
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
++|+||||||..... . ........+++|+.|+..+++++.+. +.++||++||..+..+ ...|++|
T Consensus 91 ---~~D~Vih~Aa~~~~~-~---~~~~~~~~~~~Nv~gt~~l~~aa~~~-----~v~~~V~~SS~~~~~p---~~~Y~~s 155 (344)
T 2gn4_A 91 ---GVDICIHAAALKHVP-I---AEYNPLECIKTNIMGASNVINACLKN-----AISQVIALSTDKAANP---INLYGAT 155 (344)
T ss_dssp ---TCSEEEECCCCCCHH-H---HHHSHHHHHHHHHHHHHHHHHHHHHT-----TCSEEEEECCGGGSSC---CSHHHHH
T ss_pred ---cCCEEEECCCCCCCC-c---hhcCHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEecCCccCCC---ccHHHHH
Confidence 689999999976421 1 12335689999999999999998763 3479999999876654 4689999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhh-------hccc---cCCCCCCHHHHHHHHHHHhc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDK-------YDIS---KAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~-------~~~~---~~~~~~~p~~ia~~i~~~l~ 939 (958)
|++.+.++++++.++++.|+++++|.||.|.++.... -+..... .... ....++.++|+|+++++++.
T Consensus 156 K~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~~--i~~~~~~~~~g~~~~~i~~~~~~r~~i~v~D~a~~v~~~l~ 233 (344)
T 2gn4_A 156 KLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGSV--VPFFKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSLK 233 (344)
T ss_dssp HHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTTSH--HHHHHHHHHHTCCCEEESCTTCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCCCH--HHHHHHHHHcCCCceEEeCCCeEEeeEEHHHHHHHHHHHHh
Confidence 9999999999999888899999999999999874211 0111110 0000 01125789999999999887
Q ss_pred CCC
Q psy4557 940 QPS 942 (958)
Q Consensus 940 ~~~ 942 (958)
.+.
T Consensus 234 ~~~ 236 (344)
T 2gn4_A 234 RMH 236 (344)
T ss_dssp HCC
T ss_pred hcc
Confidence 654
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=195.31 Aligned_cols=211 Identities=17% Similarity=0.223 Sum_probs=159.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-CCCcEEEE-EecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-APGSIIVK-KLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-~~~~~~~~-~~Dvs~~~~v~~~~~~~~~ 789 (958)
..+++|+++||||+|+||++++++|+++|++|++++|+.++.+.+.+.+.. .+.++.++ .+|+++.+++.++++
T Consensus 7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~---- 82 (342)
T 1y1p_A 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK---- 82 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT----
T ss_pred cCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc----
Confidence 346889999999999999999999999999999999998877766655532 12457777 799999887765543
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-CCC-------
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-PFA------- 861 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-~~~------- 861 (958)
++|+||||||..... ++++..+++|+.|+..+++++.+ ..+.++||++||.++.. +.+
T Consensus 83 ---~~d~vih~A~~~~~~-------~~~~~~~~~n~~g~~~ll~~~~~----~~~~~~iv~~SS~~~~~~~~~~~~~~~~ 148 (342)
T 1y1p_A 83 ---GAAGVAHIASVVSFS-------NKYDEVVTPAIGGTLNALRAAAA----TPSVKRFVLTSSTVSALIPKPNVEGIYL 148 (342)
T ss_dssp ---TCSEEEECCCCCSCC-------SCHHHHHHHHHHHHHHHHHHHHT----CTTCCEEEEECCGGGTCCCCTTCCCCEE
T ss_pred ---CCCEEEEeCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHh----CCCCcEEEEeccHHHhcCCCCCCCCccc
Confidence 689999999986432 24678999999999999988754 22347999999987642 211
Q ss_pred -----------------------CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh----hhhh
Q psy4557 862 -----------------------GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR----DVVD 914 (958)
Q Consensus 862 -----------------------~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~----~~~~ 914 (958)
....|+.||++.+.+++.++.+++. |++++++.||.+.+++....... ....
T Consensus 149 ~E~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~-~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~ 227 (342)
T 1y1p_A 149 DEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKP-HFTLNAVLPNYTIGTIFDPETQSGSTSGWMM 227 (342)
T ss_dssp CTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCC-SSEEEEEEESEEECCCSCTTTCCCHHHHHHH
T ss_pred CccccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCC-CceEEEEcCCceECCCCCCCCCCccHHHHHH
Confidence 2357999999999999999999876 89999999999999875432111 0010
Q ss_pred hh---------ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 915 KY---------DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 915 ~~---------~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
.. .......++.++|+|+++++++..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 263 (342)
T 1y1p_A 228 SLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLP 263 (342)
T ss_dssp HHHTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHCT
T ss_pred HHHcCCCccccccCCcCCEeEHHHHHHHHHHHHcCc
Confidence 00 0001123578999999999988764
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-19 Score=198.32 Aligned_cols=215 Identities=16% Similarity=0.145 Sum_probs=155.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHH-HHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLEN-LKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~-~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
|++|+++||||+|+||.+++++|+++|++|++++|+.+..+. ..+.+. ...++.++.+|++|.+++.++++.+
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~----- 74 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELG-IENDVKIIHMDLLEFSNIIRTIEKV----- 74 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTT-CTTTEEECCCCTTCHHHHHHHHHHH-----
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhcc-ccCceeEEECCCCCHHHHHHHHHhc-----
Confidence 468999999999999999999999999999999998765321 112221 1235788899999999998888765
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-----------CCCC
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-----------RPFA 861 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-----------~~~~ 861 (958)
++|+||||||.... +.+.++++..+++|+.|+..+++++.+ + +..++||++||.+.. .+.+
T Consensus 75 ~~d~vih~A~~~~~----~~~~~~~~~~~~~Nv~g~~~l~~a~~~-~---~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~ 146 (345)
T 2z1m_A 75 QPDEVYNLAAQSFV----GVSFEQPILTAEVDAIGVLRILEALRT-V---KPDTKFYQASTSEMFGKVQEIPQTEKTPFY 146 (345)
T ss_dssp CCSEEEECCCCCCH----HHHTTSHHHHHHHHTHHHHHHHHHHHH-H---CTTCEEEEEEEGGGGCSCSSSSBCTTSCCC
T ss_pred CCCEEEECCCCcch----hhhhhCHHHHHHHHHHHHHHHHHHHHH-h---CCCceEEEEechhhcCCCCCCCCCccCCCC
Confidence 79999999997532 112346889999999999999999874 3 113799999998642 2334
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhC---CCCcEEEEEECCcccCCCCCCCCC--hhhhhh------hcc-ccCCCCCCHHH
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVS---DRNIKVTCIQAGDVKTELLSHSTD--RDVVDK------YDI-SKAVPVLTTKE 929 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~---~~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~------~~~-~~~~~~~~p~~ 929 (958)
....|+.||++.+.+++.++.+++ ..++.++.+.||.+.|.+...... ...... ... .....++.++|
T Consensus 147 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D 226 (345)
T 2z1m_A 147 PRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPE 226 (345)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHH
Confidence 567899999999999999999886 445678889999888765211000 000000 000 01123678999
Q ss_pred HHHHHHHHhcCCC
Q psy4557 930 ISQSIIFALLQPS 942 (958)
Q Consensus 930 ia~~i~~~l~~~~ 942 (958)
+|+++++++..+.
T Consensus 227 va~a~~~~~~~~~ 239 (345)
T 2z1m_A 227 YVEAMWLMMQQPE 239 (345)
T ss_dssp HHHHHHHHHTSSS
T ss_pred HHHHHHHHHhCCC
Confidence 9999999887654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-19 Score=188.04 Aligned_cols=203 Identities=19% Similarity=0.097 Sum_probs=147.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHc--CCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTL--GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~--Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+++|+++||||+++||++++++|+++ |++|++++|+.++++++ ...+.++.+|+++.+++.++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~------ 68 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-------GGEADVFIGDITDADSINPAFQ------ 68 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-------TCCTTEEECCTTSHHHHHHHHT------
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-------CCCeeEEEecCCCHHHHHHHHc------
Confidence 46789999999999999999999999 89999999997765543 2345578899999988877764
Q ss_pred CCccEEEEccccCCCccc---------cCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC
Q psy4557 792 GHIDILVNNAGVMYFTLM---------EKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG 862 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~---------~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~ 862 (958)
.+|++|||||....... .+...+.+++++++|+.++..+++++... +.++||++||.++..+.+.
T Consensus 69 -~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~~~iv~~SS~~~~~~~~~ 142 (253)
T 1xq6_A 69 -GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-----GVKHIVVVGSMGGTNPDHP 142 (253)
T ss_dssp -TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-----TCSEEEEEEETTTTCTTCG
T ss_pred -CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc-----CCCEEEEEcCccCCCCCCc
Confidence 58999999997642211 12223456678999999999888876432 3479999999987654443
Q ss_pred Chh-----hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHH
Q psy4557 863 LAV-----YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 863 ~~~-----Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~ 937 (958)
... |+.+|++++.+.+. .|+++++|.||++.++....................+++.++|+|++++++
T Consensus 143 ~~~~~~~~y~~sK~~~e~~~~~-------~~i~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dva~~~~~~ 215 (253)
T 1xq6_A 143 LNKLGNGNILVWKRKAEQYLAD-------SGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQA 215 (253)
T ss_dssp GGGGGGCCHHHHHHHHHHHHHT-------SSSCEEEEEECEEECSCSSSSCEEEESTTGGGGSSCCEEEHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHh-------CCCceEEEecceeecCCcchhhhhccCCcCCcCCCCcEEcHHHHHHHHHHH
Confidence 333 56699999988753 689999999999999864321100000000001123467899999999998
Q ss_pred hcCCC
Q psy4557 938 LLQPS 942 (958)
Q Consensus 938 l~~~~ 942 (958)
+.++.
T Consensus 216 ~~~~~ 220 (253)
T 1xq6_A 216 LLFEE 220 (253)
T ss_dssp TTCGG
T ss_pred HcCcc
Confidence 87654
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.3e-19 Score=193.37 Aligned_cols=239 Identities=15% Similarity=0.180 Sum_probs=165.8
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCC-Chh---hHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRET-PNK---TLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~-~~~---~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
++|||||||||+|++|++.|++++ .+|++++|.. +.. ...+.+.. +. ..+++++.+|++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~~~~~-l~-----------~~~v~~v~~D~~d--- 66 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTITAANPETKEELIDN-YQ-----------SLGVILLEGDIND--- 66 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSCCSSCHHHHHHHHHH-HH-----------HTTCEEEECCTTC---
T ss_pred cEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCcccCChHHHHHHHHH-HH-----------hCCCEEEEeCCCC---
Confidence 579999999999999999999875 6899999975 211 11111211 10 1367889999873
Q ss_pred CCCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCC-CccEEEEecccccCCCCCCCcccccc
Q psy4557 396 GLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDSIYPSTSENFQEDYTV 474 (958)
Q Consensus 396 GL~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~v~~~~~~~~~e~~~~ 474 (958)
.+.+..+.+++|+|||+|+..+ +.++++++++|.+.+ +++|++ ++||.... +.
T Consensus 67 ----~~~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~----S~~g~~~~---~~--- 120 (307)
T 2gas_A 67 ----HETLVKAIKQVDIVICAAGRLL------------IEDQVKIIKAIKEAGNVKKFFP----SEFGLDVD---RH--- 120 (307)
T ss_dssp ----HHHHHHHHTTCSEEEECSSSSC------------GGGHHHHHHHHHHHCCCSEEEC----SCCSSCTT---SC---
T ss_pred ----HHHHHHHHhCCCEEEECCcccc------------cccHHHHHHHHHhcCCceEEee----cccccCcc---cc---
Confidence 4677788889999999999643 457889999998876 888873 34553211 11
Q ss_pred cCcCCCCCC-CCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhC---CcCCCCCc
Q psy4557 475 ADFDDFMTT-TSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLG---YAPDIDWY 550 (958)
Q Consensus 475 ~~~~~~~~~-~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g---~~P~~~~~ 550 (958)
.+..+ .+.| .||+.+|++++. .|++++++|||.+++.......... ......+ ...+.+..
T Consensus 121 ----~~~~p~~~~y-~sK~~~e~~~~~---~~i~~~~lrp~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 185 (307)
T 2gas_A 121 ----DAVEPVRQVF-EEKASIRRVIEA---EGVPYTYLCCHAFTGYFLRNLAQLD-------ATDPPRDKVVILGDGNVK 185 (307)
T ss_dssp ----CCCTTHHHHH-HHHHHHHHHHHH---HTCCBEEEECCEETTTTGGGTTCTT-------CSSCCSSEEEEETTSCSE
T ss_pred ----cCCCcchhHH-HHHHHHHHHHHH---cCCCeEEEEcceeeccccccccccc-------cccCCCCeEEEecCCCcc
Confidence 00111 2479 999999998864 4899999999999875321111000 0000011 11223456
Q ss_pred CCcccHHHHHHHHHHHhcCcCCCCceEEecCC-CCCCHHHHHHHHHHc-CCC--ccccChHHHHHHHhc
Q psy4557 551 LEFTPVDFLTKSLVQLTTNVNNANKIYNFINT-NPIHIKTLVSVLNTY-GYN--IKTVPYEKWFHKLNK 615 (958)
Q Consensus 551 ~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~-~~~~~~~l~~~l~~~-g~~--~~~v~~~eW~~~~~~ 615 (958)
++|++++++|++++.+...+...+++|++..+ ..+++.|+++.+.+. |.+ +..+|.++|.+.+..
T Consensus 186 ~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 254 (307)
T 2gas_A 186 GAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEEQVLKDIQE 254 (307)
T ss_dssp EEEECHHHHHHHHHHHHTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEECHHHHHHHHHH
T ss_pred eEEeeHHHHHHHHHHHHcCccccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecCHHHHHHHHhc
Confidence 88999999999999998766555788888865 689999999999864 655 567999999987644
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-19 Score=193.66 Aligned_cols=245 Identities=16% Similarity=0.158 Sum_probs=166.5
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|+|||||||+|++|++.|++++ .+|++++|..+.....++... +... ...+++++.+|++.
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~~~-~~~l--------~~~~v~~v~~D~~d------- 67 (308)
T 1qyc_A 5 SRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQL-LESF--------KASGANIVHGSIDD------- 67 (308)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHHHH-HHHH--------HTTTCEEECCCTTC-------
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccccCHHHHHH-HHHH--------HhCCCEEEEeccCC-------
Confidence 579999999999999999999875 789999997643200111111 1100 02468889999873
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCC-CccEEEEecccccCCCCCCCcccccccCcC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDSIYPSTSENFQEDYTVADFD 478 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~v~~~~~~~~~e~~~~~~~~ 478 (958)
.+.+..+.+++|+|||+|+..+ +.++++++++|.+.+ +++|++ | +||... .+.
T Consensus 68 ~~~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~---~~~------- 121 (308)
T 1qyc_A 68 HASLVEAVKNVDVVISTVGSLQ------------IESQVNIIKAIKEVGTVKRFFP-S---EFGNDV---DNV------- 121 (308)
T ss_dssp HHHHHHHHHTCSEEEECCCGGG------------SGGGHHHHHHHHHHCCCSEEEC-S---CCSSCT---TSC-------
T ss_pred HHHHHHHHcCCCEEEECCcchh------------hhhHHHHHHHHHhcCCCceEee-c---ccccCc---ccc-------
Confidence 4667777889999999998643 557789999998877 888874 3 455321 111
Q ss_pred CCCCC-CCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHH
Q psy4557 479 DFMTT-TSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVD 557 (958)
Q Consensus 479 ~~~~~-~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD 557 (958)
.+..+ .+.| .||+.+|++++. .|++++++|||.++|........... .... ........+.+..++|++++
T Consensus 122 ~~~~p~~~~y-~sK~~~e~~~~~---~~~~~~~~r~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~ 193 (308)
T 1qyc_A 122 HAVEPAKSVF-EVKAKVRRAIEA---EGIPYTYVSSNCFAGYFLRSLAQAGL---TAPP-RDKVVILGDGNARVVFVKEE 193 (308)
T ss_dssp CCCTTHHHHH-HHHHHHHHHHHH---HTCCBEEEECCEEHHHHTTTTTCTTC---SSCC-SSEEEEETTSCCEEEEECHH
T ss_pred ccCCcchhHH-HHHHHHHHHHHh---cCCCeEEEEeceeccccccccccccc---cCCC-CCceEEecCCCceEEEecHH
Confidence 00111 2468 999999999864 48999999999998853211111000 0000 00001111234568999999
Q ss_pred HHHHHHHHHhcCcCCCCceEEecCC-CCCCHHHHHHHHHH-cCCC--ccccChHHHHHHHhc
Q psy4557 558 FLTKSLVQLTTNVNNANKIYNFINT-NPIHIKTLVSVLNT-YGYN--IKTVPYEKWFHKLNK 615 (958)
Q Consensus 558 ~va~aiv~l~~~~~~~~~v~h~~n~-~~~~~~~l~~~l~~-~g~~--~~~v~~~eW~~~~~~ 615 (958)
+++++++.+...+...+++||+..+ ..+++.|+++.+.+ .|.+ +..+|.++|.+.+..
T Consensus 194 Dva~~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 255 (308)
T 1qyc_A 194 DIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIAD 255 (308)
T ss_dssp HHHHHHHTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHHhCccccCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCCHHHHHHHHhc
Confidence 9999999988766555788998865 68999999999976 4665 457899999987654
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=191.20 Aligned_cols=234 Identities=18% Similarity=0.218 Sum_probs=165.3
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||+|+++++.|++++ .+|++++|..+.. .+.+.+ +. ..+++++.+|++.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~--~~~~~~-l~-----------~~~v~~v~~Dl~d------- 69 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLG-HPTYVFTRPNSSK--TTLLDE-FQ-----------SLGAIIVKGELDE------- 69 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECTTCSC--HHHHHH-HH-----------HTTCEEEECCTTC-------
T ss_pred CeEEEECCCchHHHHHHHHHHHCC-CcEEEEECCCCch--hhHHHH-hh-----------cCCCEEEEecCCC-------
Confidence 479999999999999999999874 7899999976421 111211 10 1367889999873
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCC-CccEEEEecccccCCCCCCCcccccccCcC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDSIYPSTSENFQEDYTVADFD 478 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~v~~~~~~~~~e~~~~~~~~ 478 (958)
.+.+..+.+++|+|||+|+..+ +.++++++++|.+.+ +++|++ | +||... .+...
T Consensus 70 ~~~l~~a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~---~~~~~----- 125 (318)
T 2r6j_A 70 HEKLVELMKKVDVVISALAFPQ------------ILDQFKILEAIKVAGNIKRFLP-S---DFGVEE---DRINA----- 125 (318)
T ss_dssp HHHHHHHHTTCSEEEECCCGGG------------STTHHHHHHHHHHHCCCCEEEC-S---CCSSCT---TTCCC-----
T ss_pred HHHHHHHHcCCCEEEECCchhh------------hHHHHHHHHHHHhcCCCCEEEe-e---ccccCc---ccccC-----
Confidence 4678888889999999998642 567899999998876 888874 3 455321 11100
Q ss_pred CCCCC-CCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC---cCCCCCcCCcc
Q psy4557 479 DFMTT-TSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY---APDIDWYLEFT 554 (958)
Q Consensus 479 ~~~~~-~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~---~P~~~~~~~~~ 554 (958)
..+ ...| .||+.+|++++. .|++++++|||.+++. ++..+++.....+. .++.+..++|+
T Consensus 126 --~~p~~~~y-~sK~~~e~~~~~---~~~~~~~lr~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i 189 (318)
T 2r6j_A 126 --LPPFEALI-ERKRMIRRAIEE---ANIPYTYVSANCFASY----------FINYLLRPYDPKDEITVYGTGEAKFAMN 189 (318)
T ss_dssp --CHHHHHHH-HHHHHHHHHHHH---TTCCBEEEECCEEHHH----------HHHHHHCTTCCCSEEEEETTSCCEEEEE
T ss_pred --CCCcchhH-HHHHHHHHHHHh---cCCCeEEEEcceehhh----------hhhhhccccCCCCceEEecCCCceeeEe
Confidence 011 2468 999999999854 5899999999988763 12222211111111 12334568899
Q ss_pred cHHHHHHHHHHHhcCcCCCCceEEecCC-CCCCHHHHHHHHHHc-CCC--ccccChHHHHHHHhc
Q psy4557 555 PVDFLTKSLVQLTTNVNNANKIYNFINT-NPIHIKTLVSVLNTY-GYN--IKTVPYEKWFHKLNK 615 (958)
Q Consensus 555 pVD~va~aiv~l~~~~~~~~~v~h~~n~-~~~~~~~l~~~l~~~-g~~--~~~v~~~eW~~~~~~ 615 (958)
++++++++++.+...+...+++||+..+ ..+++.|+++.+.+. |.+ +..+|.++|.+.+..
T Consensus 190 ~~~Dva~~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 254 (318)
T 2r6j_A 190 YEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALTKE 254 (318)
T ss_dssp CHHHHHHHHHHHTTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEECHHHHHHHHHH
T ss_pred eHHHHHHHHHHHhcCccccCeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecCHHHHHHHHhc
Confidence 9999999999998766555778888765 789999999999764 665 568999999887543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=193.29 Aligned_cols=237 Identities=17% Similarity=0.228 Sum_probs=166.9
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCC-Ch--hhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRET-PN--KTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~-~~--~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
.++|||||||||+|++|++.|++++ .+|+++.|.. +. ....+.+.. +. ..+++++.+|++.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~l~~-~~-----------~~~v~~v~~D~~d--- 67 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLTPDSTPSSVQLREE-FR-----------SMGVTIIEGEMEE--- 67 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCCTTCCHHHHHHHHH-HH-----------HTTCEEEECCTTC---
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCcccccChHHHHHHHH-hh-----------cCCcEEEEecCCC---
Confidence 3579999999999999999999874 7899999975 21 111112211 10 2468889999873
Q ss_pred CCCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCC-CccEEEEecccccCCCCCCCcccccc
Q psy4557 396 GLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNK-IKSFHYVSTDSIYPSTSENFQEDYTV 474 (958)
Q Consensus 396 GL~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~-~k~~~~vST~~v~~~~~~~~~e~~~~ 474 (958)
.+.+..+.+++|+|||+|+..+ +.++++++++|.+.+ +++|++ ++||... .+...
T Consensus 68 ----~~~l~~a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~----S~~g~~~---~~~~~- 123 (321)
T 3c1o_A 68 ----HEKMVSVLKQVDIVISALPFPM------------ISSQIHIINAIKAAGNIKRFLP----SDFGCEE---DRIKP- 123 (321)
T ss_dssp ----HHHHHHHHTTCSEEEECCCGGG------------SGGGHHHHHHHHHHCCCCEEEC----SCCSSCG---GGCCC-
T ss_pred ----HHHHHHHHcCCCEEEECCCccc------------hhhHHHHHHHHHHhCCccEEec----cccccCc---ccccc-
Confidence 4678888889999999998642 567889999998877 888873 3455321 11100
Q ss_pred cCcCCCCCC-CCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH---HHHhCC---cCCC
Q psy4557 475 ADFDDFMTT-TSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA---ITRLGY---APDI 547 (958)
Q Consensus 475 ~~~~~~~~~-~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~---~~~~g~---~P~~ 547 (958)
..+ .+.| .||+.+|++++. .|++++++|||.+++.. ...+... ....+. +++.
T Consensus 124 ------~~p~~~~y-~sK~~~e~~~~~---~~~~~~~lrp~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 183 (321)
T 3c1o_A 124 ------LPPFESVL-EKKRIIRRAIEA---AALPYTYVSANCFGAYF----------VNYLLHPSPHPNRNDDIVIYGTG 183 (321)
T ss_dssp ------CHHHHHHH-HHHHHHHHHHHH---HTCCBEEEECCEEHHHH----------HHHHHCCCSSCCTTSCEEEETTS
T ss_pred ------CCCcchHH-HHHHHHHHHHHH---cCCCeEEEEeceecccc----------ccccccccccccccCceEEecCC
Confidence 011 3469 999999999863 48999999999988741 1111110 001111 1233
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCC-CCCCHHHHHHHHHHc-CCC--ccccChHHHHHHHhc
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINT-NPIHIKTLVSVLNTY-GYN--IKTVPYEKWFHKLNK 615 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~-~~~~~~~l~~~l~~~-g~~--~~~v~~~eW~~~~~~ 615 (958)
+..+++++++++|++++.+...+...+++|++..+ ..+++.|+++.+.+. |.+ +..+|.++|.+.+..
T Consensus 184 ~~~~~~i~~~Dva~~~~~~l~~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 255 (321)
T 3c1o_A 184 ETKFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMPDEQLVRLSQE 255 (321)
T ss_dssp CCEEEEECHHHHHHHHHHHHHCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHH
T ss_pred CcceeEeeHHHHHHHHHHHHhCccccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCCHHHHHHHHhc
Confidence 45688999999999999998776556788898865 789999999999764 655 567899999887644
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-18 Score=179.68 Aligned_cols=185 Identities=13% Similarity=0.089 Sum_probs=125.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC-CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..+..|+++||||++|||++++++|+++| ++|++++|+.++++++ ....+.++++|++|.++++++++
T Consensus 19 ~~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~----- 87 (236)
T 3qvo_A 19 FQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP------YPTNSQIIMGDVLNHAALKQAMQ----- 87 (236)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS------CCTTEEEEECCTTCHHHHHHHHT-----
T ss_pred ecCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc------ccCCcEEEEecCCCHHHHHHHhc-----
Confidence 34456899999999999999999999999 8999999998765432 12468889999999998887765
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh-----
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV----- 865 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~----- 865 (958)
.+|+||||||... . ...++.+++.|.+. +.++||++||..+..+.++...
T Consensus 88 --~~D~vv~~a~~~~--------~--------------~~~~~~~~~~~~~~-~~~~iV~iSS~~~~~~~~~~~~~~~~~ 142 (236)
T 3qvo_A 88 --GQDIVYANLTGED--------L--------------DIQANSVIAAMKAC-DVKRLIFVLSLGIYDEVPGKFVEWNNA 142 (236)
T ss_dssp --TCSEEEEECCSTT--------H--------------HHHHHHHHHHHHHT-TCCEEEEECCCCC--------------
T ss_pred --CCCEEEEcCCCCc--------h--------------hHHHHHHHHHHHHc-CCCEEEEEecceecCCCCcccccchhh
Confidence 5799999998621 1 13466788888744 4589999999987665544211
Q ss_pred ----hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 866 ----YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 866 ----Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+...|.. ....+.+.||++++|+||++.|+...... . .........++++++|+|+++++++.++
T Consensus 143 ~~~~~~~~~~~-------~~~~l~~~gi~~~~vrPg~i~~~~~~~~~---~-~~~~~~~~~~~i~~~DvA~~i~~ll~~~ 211 (236)
T 3qvo_A 143 VIGEPLKPFRR-------AADAIEASGLEYTILRPAWLTDEDIIDYE---L-TSRNEPFKGTIVSRKSVAALITDIIDKP 211 (236)
T ss_dssp --CGGGHHHHH-------HHHHHHTSCSEEEEEEECEEECCSCCCCE---E-ECTTSCCSCSEEEHHHHHHHHHHHHHST
T ss_pred cccchHHHHHH-------HHHHHHHCCCCEEEEeCCcccCCCCcceE---E-eccCCCCCCcEECHHHHHHHHHHHHcCc
Confidence 1111211 12234478999999999999987543210 0 0000111124579999999999999877
Q ss_pred CC
Q psy4557 942 SH 943 (958)
Q Consensus 942 ~~ 943 (958)
..
T Consensus 212 ~~ 213 (236)
T 3qvo_A 212 EK 213 (236)
T ss_dssp TT
T ss_pred cc
Confidence 63
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=189.15 Aligned_cols=202 Identities=14% Similarity=0.128 Sum_probs=152.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.+.|+++||||+|+||++++++|+++|++|++++|+.+. +. + .+.++.+|+++.+++.++++. ++
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~----l-----~~~~~~~Dl~d~~~~~~~~~~-----~~ 74 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL----P-----NVEMISLDIMDSQRVKKVISD-----IK 74 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC----T-----TEEEEECCTTCHHHHHHHHHH-----HC
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc----c-----eeeEEECCCCCHHHHHHHHHh-----cC
Confidence 467899999999999999999999999999999998654 21 1 477889999999998888765 47
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-------------C
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP-------------F 860 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~-------------~ 860 (958)
+|+||||||..... .+.++++..+++|+.|+..+++++ +.+ ++.++||++||.+..-. .
T Consensus 75 ~d~vih~A~~~~~~----~~~~~~~~~~~~Nv~g~~~l~~a~-~~~---~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~ 146 (321)
T 2pk3_A 75 PDYIFHLAAKSSVK----DSWLNKKGTFSTNVFGTLHVLDAV-RDS---NLDCRILTIGSSEEYGMILPEESPVSEENQL 146 (321)
T ss_dssp CSEEEECCSCCCHH----HHTTCHHHHHHHHHHHHHHHHHHH-HHH---TCCCEEEEEEEGGGTBSCCGGGCSBCTTSCC
T ss_pred CCEEEEcCcccchh----hhhhcHHHHHHHHHHHHHHHHHHH-HHh---CCCCeEEEEccHHhcCCCCCCCCCCCCCCCC
Confidence 99999999975421 122357899999999999999988 555 23579999999875432 2
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhh-----c------cc----cCCCC
Q psy4557 861 AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKY-----D------IS----KAVPV 924 (958)
Q Consensus 861 ~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~-----~------~~----~~~~~ 924 (958)
+....|+.||++.+.+++.++.++ |++++++.||.+.++....... ....... . .. ....+
T Consensus 147 ~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 223 (321)
T 2pk3_A 147 RPMSPYGVSKASVGMLARQYVKAY---GMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDF 223 (321)
T ss_dssp BCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHHHHc---CCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEee
Confidence 456789999999999999999874 8999999999999987543110 0111100 0 00 01225
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy4557 925 LTTKEISQSIIFALLQP 941 (958)
Q Consensus 925 ~~p~~ia~~i~~~l~~~ 941 (958)
+.++|+|+++++++..+
T Consensus 224 v~v~Dva~a~~~~~~~~ 240 (321)
T 2pk3_A 224 TDVRDIVQAYWLLSQYG 240 (321)
T ss_dssp EEHHHHHHHHHHHHHHC
T ss_pred EEHHHHHHHHHHHHhCC
Confidence 68999999999988765
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=187.21 Aligned_cols=207 Identities=14% Similarity=0.112 Sum_probs=154.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh-hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~-~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
|+++||||+|+||++++++|+++|++|++++|+. ....+..+.+.. .+++.++.+|+++.+++.++++. .++|
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d 75 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS-LGNFEFVHGDIRNKNDVTRLITK-----YMPD 75 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT-TCCCEEEECCTTCHHHHHHHHHH-----HCCS
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc-CCceEEEEcCCCCHHHHHHHHhc-----cCCC
Confidence 5799999999999999999999999999999853 222333334433 23577889999999998888765 2799
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----------------
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR----------------- 858 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~----------------- 858 (958)
+||||||.... +.+.++++..+++|+.|+..+++++.+.+. +++||++||.+..-
T Consensus 76 ~vih~A~~~~~----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~----~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~ 147 (347)
T 1orr_A 76 SCFHLAGQVAM----TTSIDNPCMDFEINVGGTLNLLEAVRQYNS----NCNIIYSSTNKVYGDLEQYKYNETETRYTCV 147 (347)
T ss_dssp EEEECCCCCCH----HHHHHCHHHHHHHHHHHHHHHHHHHHHHCT----TCEEEEEEEGGGGTTCTTSCEEECSSCEEET
T ss_pred EEEECCcccCh----hhhhhCHHHHHHHHHHHHHHHHHHHHHhCC----CceEEEeccHHHhCCCCcCCccccccccccc
Confidence 99999997532 123456889999999999999999987653 37999999976432
Q ss_pred ----------CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh----hhhhhh---c----
Q psy4557 859 ----------PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR----DVVDKY---D---- 917 (958)
Q Consensus 859 ----------~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~----~~~~~~---~---- 917 (958)
+.+....|+.||++.+.+++.++.++ |+++++|.||+|.++........ ...... .
T Consensus 148 ~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (347)
T 1orr_A 148 DKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF---GLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGIN 224 (347)
T ss_dssp TCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCC
T ss_pred ccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCC
Confidence 22356789999999999999999886 79999999999999875322111 011100 0
Q ss_pred --c--cc----CCCCCCHHHHHHHHHHHhcC
Q psy4557 918 --I--SK----AVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 918 --~--~~----~~~~~~p~~ia~~i~~~l~~ 940 (958)
. .. ...++.++|+|+++++++..
T Consensus 225 ~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~ 255 (347)
T 1orr_A 225 KPFTISGNGKQVRDVLHAEDMISLYFTALAN 255 (347)
T ss_dssp CCEEEESSSCCEEECEEHHHHHHHHHHHHHT
T ss_pred CCeEEecCCcceEeeEEHHHHHHHHHHHHhc
Confidence 0 00 01256899999999998764
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=193.63 Aligned_cols=206 Identities=10% Similarity=0.054 Sum_probs=147.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...++.+.+ ..+.++.+|+++.+++.++++++
T Consensus 16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l----~~v~~~~~Dl~d~~~~~~~~~~~---- 87 (330)
T 2pzm_A 16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV----AGLSVIEGSVTDAGLLERAFDSF---- 87 (330)
T ss_dssp STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSC----TTEEEEECCTTCHHHHHHHHHHH----
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhcc----CCceEEEeeCCCHHHHHHHHhhc----
Confidence 4567899999999999999999999999999999999754322111111 35788899999999998888765
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC-----C-----
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-----A----- 861 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-----~----- 861 (958)
++|+||||||..... +.++++ +++|+.|+..+++++.. . +.++||++||.+..-.. +
T Consensus 88 -~~D~vih~A~~~~~~-----~~~~~~--~~~N~~~~~~l~~a~~~----~-~~~~iV~~SS~~~~~~~~~~~~~~~E~~ 154 (330)
T 2pzm_A 88 -KPTHVVHSAAAYKDP-----DDWAED--AATNVQGSINVAKAASK----A-GVKRLLNFQTALCYGRPATVPIPIDSPT 154 (330)
T ss_dssp -CCSEEEECCCCCSCT-----TCHHHH--HHHHTHHHHHHHHHHHH----H-TCSEEEEEEEGGGGCSCSSSSBCTTCCC
T ss_pred -CCCEEEECCccCCCc-----cccChh--HHHHHHHHHHHHHHHHH----c-CCCEEEEecCHHHhCCCccCCCCcCCCC
Confidence 799999999986432 345666 99999999999998863 1 34799999998765433 2
Q ss_pred -CChhhhHHHHHHHHHHHHHHHHhCCCCcE-EEEEECCcccCCCCCCCCChhhhh---hhccccCCCCCCHHHHHH-HHH
Q psy4557 862 -GLAVYTGTKYFIEGISGALRQEVSDRNIK-VTCIQAGDVKTELLSHSTDRDVVD---KYDISKAVPVLTTKEISQ-SII 935 (958)
Q Consensus 862 -~~~~Y~asKaa~~~l~~~la~el~~~gIr-v~~v~PG~v~T~~~~~~~~~~~~~---~~~~~~~~~~~~p~~ia~-~i~ 935 (958)
....|+.||++.+.+++.+ ++....|| ++.+.||. .|++..... ..... .+.......++.++|+|+ +++
T Consensus 155 ~~~~~Y~~sK~~~e~~~~~~--~~~~~~iR~~~v~gp~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~Dva~~a~~ 230 (330)
T 2pzm_A 155 APFTSYGISKTAGEAFLMMS--DVPVVSLRLANVTGPRL-AIGPIPTFY-KRLKAGQKCFCSDTVRDFLDMSDFLAIADL 230 (330)
T ss_dssp CCCSHHHHHHHHHHHHHHTC--SSCEEEEEECEEECTTC-CSSHHHHHH-HHHHTTCCCCEESCEECEEEHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHc--CCCEEEEeeeeeECcCC-CCCHHHHHH-HHHHcCCEEeCCCCEecceeHHHHHHHHHH
Confidence 5678999999999999887 44445667 67777775 343321000 00000 000000234578999999 999
Q ss_pred HHhcCCC
Q psy4557 936 FALLQPS 942 (958)
Q Consensus 936 ~~l~~~~ 942 (958)
+++..+.
T Consensus 231 ~~~~~~~ 237 (330)
T 2pzm_A 231 SLQEGRP 237 (330)
T ss_dssp HTSTTCC
T ss_pred HHhhcCC
Confidence 9877653
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-18 Score=180.49 Aligned_cols=180 Identities=19% Similarity=0.277 Sum_probs=143.7
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCC-HHHHHHHHHHHHHHcCCccE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI-ENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~iDi 796 (958)
+++||||+|+||++++++|+++|++|++++|+.++++++ ..+.++++|+++ .+++.+++ ..+|+
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~-------~~~d~ 66 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--------NNVKAVHFDVDWTPEEMAKQL-------HGMDA 66 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--------TTEEEEECCTTSCHHHHHTTT-------TTCSE
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--------CCceEEEecccCCHHHHHHHH-------cCCCE
Confidence 589999999999999999999999999999998654422 468899999999 87776655 36999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC-------ChhhhHH
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG-------LAVYTGT 869 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~-------~~~Y~as 869 (958)
||||||.... ..+++|+.|+..+++++. + .+.++||++||..+..+.+. ...|+.+
T Consensus 67 vi~~ag~~~~------------~~~~~n~~~~~~l~~a~~----~-~~~~~iv~~SS~~~~~~~~~~e~~~~~~~~Y~~s 129 (219)
T 3dqp_A 67 IINVSGSGGK------------SLLKVDLYGAVKLMQAAE----K-AEVKRFILLSTIFSLQPEKWIGAGFDALKDYYIA 129 (219)
T ss_dssp EEECCCCTTS------------SCCCCCCHHHHHHHHHHH----H-TTCCEEEEECCTTTTCGGGCCSHHHHHTHHHHHH
T ss_pred EEECCcCCCC------------CcEeEeHHHHHHHHHHHH----H-hCCCEEEEECcccccCCCcccccccccccHHHHH
Confidence 9999998652 267789999988887763 2 23479999999988877666 7889999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
|++.+.+.+ ...|+++++|.||++.++...... . . ......++.++|+|+++++++.++.
T Consensus 130 K~~~e~~~~------~~~~i~~~ilrp~~v~g~~~~~~~-----~-~-~~~~~~~i~~~Dva~~i~~~l~~~~ 189 (219)
T 3dqp_A 130 KHFADLYLT------KETNLDYTIIQPGALTEEEATGLI-----D-I-NDEVSASNTIGDVADTIKELVMTDH 189 (219)
T ss_dssp HHHHHHHHH------HSCCCEEEEEEECSEECSCCCSEE-----E-E-SSSCCCCEEHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHH------hccCCcEEEEeCceEecCCCCCcc-----c-c-CCCcCCcccHHHHHHHHHHHHhCcc
Confidence 999999876 367999999999999987532210 0 0 1223457889999999999988764
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=188.94 Aligned_cols=213 Identities=18% Similarity=0.178 Sum_probs=160.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|+++||||+|+||++++++|+++|++|++++|+.++...+.+.+. ...++.++.+|+++.+++.++++.+
T Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~----- 79 (357)
T 1rkx_A 6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR-VADGMQSEIGDIRDQNKLLESIREF----- 79 (357)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT-TTTTSEEEECCTTCHHHHHHHHHHH-----
T ss_pred hhCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc-cCCceEEEEccccCHHHHHHHHHhc-----
Confidence 3578999999999999999999999999999999998766555544443 2346778899999999988887765
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC------------CC
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR------------PF 860 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~------------~~ 860 (958)
++|+||||||... .+.+.++++..+++|+.|+..+++++.+. +..++||++||.+..- +.
T Consensus 80 ~~d~vih~A~~~~----~~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~ 151 (357)
T 1rkx_A 80 QPEIVFHMAAQPL----VRLSYSEPVETYSTNVMGTVYLLEAIRHV----GGVKAVVNITSDKCYDNKEWIWGYRENEAM 151 (357)
T ss_dssp CCSEEEECCSCCC----HHHHHHCHHHHHHHHTHHHHHHHHHHHHH----CCCCEEEEECCGGGBCCCCSSSCBCTTSCB
T ss_pred CCCEEEECCCCcc----cccchhCHHHHHHHHHHHHHHHHHHHHHh----CCCCeEEEecCHHHhCCCCcCCCCCCCCCC
Confidence 6999999999632 12245668899999999999999988652 2247999999986321 33
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHhC------CCCcEEEEEECCcccCCCCCCCCC--hhhhhhh------ccc---cCCC
Q psy4557 861 AGLAVYTGTKYFIEGISGALRQEVS------DRNIKVTCIQAGDVKTELLSHSTD--RDVVDKY------DIS---KAVP 923 (958)
Q Consensus 861 ~~~~~Y~asKaa~~~l~~~la~el~------~~gIrv~~v~PG~v~T~~~~~~~~--~~~~~~~------~~~---~~~~ 923 (958)
.....|+.||++.+.+++.++.++. +.|++++++.||.+.++....... ....... ... ....
T Consensus 152 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 231 (357)
T 1rkx_A 152 GGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRP 231 (357)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEEC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEECCCCCeec
Confidence 4567899999999999999999885 458999999999999875321101 1111110 000 1123
Q ss_pred CCCHHHHHHHHHHHhc
Q psy4557 924 VLTTKEISQSIIFALL 939 (958)
Q Consensus 924 ~~~p~~ia~~i~~~l~ 939 (958)
++..+|+|++++.++.
T Consensus 232 ~v~v~Dva~a~~~~~~ 247 (357)
T 1rkx_A 232 WQHVLEPLSGYLLLAQ 247 (357)
T ss_dssp CEETHHHHHHHHHHHH
T ss_pred cEeHHHHHHHHHHHHH
Confidence 5678999999998775
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=186.23 Aligned_cols=207 Identities=15% Similarity=0.142 Sum_probs=151.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcC--CeEEEEecCh--hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRI--DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
++++++||||+|+||++++++|+++| ++|++++|+. ...+.+. .+.. ...+.++.+|+++.+++.+++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~-~~~~-~~~~~~~~~Dl~d~~~~~~~~------ 73 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLK-DLED-DPRYTFVKGDVADYELVKELV------ 73 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGT-TTTT-CTTEEEEECCTTCHHHHHHHH------
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHh-hhcc-CCceEEEEcCCCCHHHHHHHh------
Confidence 45679999999999999999999997 8999999864 1222221 1211 346888999999998887776
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc--C---------C
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV--R---------P 859 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~--~---------~ 859 (958)
+++|+||||||.... +.+.++++..+++|+.|+..+++++.+. +..++||++||.+.. . +
T Consensus 74 -~~~d~vih~A~~~~~----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~----~~~~~iv~~SS~~vyg~~~~~~~~E~~~ 144 (336)
T 2hun_A 74 -RKVDGVVHLAAESHV----DRSISSPEIFLHSNVIGTYTLLESIRRE----NPEVRFVHVSTDEVYGDILKGSFTENDR 144 (336)
T ss_dssp -HTCSEEEECCCCCCH----HHHHHCTHHHHHHHHHHHHHHHHHHHHH----CTTSEEEEEEEGGGGCCCSSSCBCTTBC
T ss_pred -hCCCEEEECCCCcCh----hhhhhCHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEeccHHHHCCCCCCCcCCCCC
Confidence 479999999997532 1234567899999999999999998775 223799999997532 1 3
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc----cc------cCCCCCCHH
Q psy4557 860 FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD----IS------KAVPVLTTK 928 (958)
Q Consensus 860 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~----~~------~~~~~~~p~ 928 (958)
.+....|+.||++.+.+++.++.++ |++++++.||.|.++....... ........ .. ....++.++
T Consensus 145 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 221 (336)
T 2hun_A 145 LMPSSPYSATKAASDMLVLGWTRTY---NLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVE 221 (336)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHT---TCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEETC---CEEEEEHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHh---CCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEeCCCCceeeeEEHH
Confidence 3456789999999999999999885 7999999999999987432110 11111100 00 012356789
Q ss_pred HHHHHHHHHhcCC
Q psy4557 929 EISQSIIFALLQP 941 (958)
Q Consensus 929 ~ia~~i~~~l~~~ 941 (958)
|+|+++++++..+
T Consensus 222 Dva~~~~~~~~~~ 234 (336)
T 2hun_A 222 DHVRAIELVLLKG 234 (336)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987654
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-18 Score=189.95 Aligned_cols=210 Identities=13% Similarity=0.136 Sum_probs=154.5
Q ss_pred EEEEEcCCchHHHHHHHHHHHc-CCeEEEEecCh--hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTL-GAKVVAVARRI--DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~-Ga~Vi~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.++||||+|+||++++++|+++ |++|++++|+. +..+.+. .+.. ...+.++.+|+++.+++.+++++ +++
T Consensus 2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~-~~~~-~~~~~~~~~Dl~d~~~~~~~~~~-----~~~ 74 (361)
T 1kew_A 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLS-DISE-SNRYNFEHADICDSAEITRIFEQ-----YQP 74 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGT-TTTT-CTTEEEEECCTTCHHHHHHHHHH-----HCC
T ss_pred EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhh-hhhc-CCCeEEEECCCCCHHHHHHHHhh-----cCC
Confidence 4899999999999999999998 79999999864 2222221 1211 34688899999999998888765 279
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC----CCcEEEEecCccCc--C----------
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR----RPGHILNISSNAGV--R---------- 858 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~----~~g~IV~isS~~g~--~---------- 858 (958)
|+||||||.... +.+.++++.++++|+.|+..+++++.+.|...+ .+|+||++||.+.. .
T Consensus 75 d~vih~A~~~~~----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~ 150 (361)
T 1kew_A 75 DAVMHLAAESHV----DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSV 150 (361)
T ss_dssp SEEEECCSCCCH----HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTS
T ss_pred CEEEECCCCcCh----hhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccc
Confidence 999999997532 223466789999999999999999999875211 12599999996532 2
Q ss_pred ---------CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc----cc-----
Q psy4557 859 ---------PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD----IS----- 919 (958)
Q Consensus 859 ---------~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~----~~----- 919 (958)
+.+....|+.||++.+.+++.++.++ |+++++|.||.|.++....... ........ ..
T Consensus 151 ~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (361)
T 1kew_A 151 TLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY---GLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKG 227 (361)
T ss_dssp CCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTS
T ss_pred cCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHh---CCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEcCCC
Confidence 22456789999999999999999886 7999999999999987532110 11111100 00
Q ss_pred -cCCCCCCHHHHHHHHHHHhcCC
Q psy4557 920 -KAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 920 -~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
....++.++|+|+++++++..+
T Consensus 228 ~~~~~~i~v~Dva~a~~~~~~~~ 250 (361)
T 1kew_A 228 DQIRDWLYVEDHARALHMVVTEG 250 (361)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHC
T ss_pred ceeEeeEEHHHHHHHHHHHHhCC
Confidence 0113567999999999988654
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-18 Score=186.26 Aligned_cols=224 Identities=11% Similarity=0.001 Sum_probs=148.6
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++++++|+++ +.+|+++.|...... . .+.+|++.
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~-g~~V~~~~r~~~~~~----------------------~---~~~~D~~~------- 48 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARA-GHTVIGIDRGQADIE----------------------A---DLSTPGGR------- 48 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSSSEE----------------------C---CTTSHHHH-------
T ss_pred cEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEeCChhHcc----------------------c---cccCCccc-------
Confidence 47999999999999999999986 478999988643210 0 14566653
Q ss_pred HHHHHHHhc----ccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEecccccCCCCCCC--c
Q psy4557 400 QDEYVSLSY----EIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDSIYPSTSENF--Q 469 (958)
Q Consensus 400 ~~~~~~l~~----~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~v~~~~~~~~--~ 469 (958)
.+....+.+ .+|+|||||+......+++....+|+.|+.++++.|.. .+.++|+|+||.++|+...... .
T Consensus 49 ~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~ 128 (255)
T 2dkn_A 49 ETAVAAVLDRCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMV 128 (255)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHH
T ss_pred HHHHHHHHHHcCCCccEEEECCCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchh
Confidence 344555543 89999999998765567888899999999999987653 3457999999999986431110 0
Q ss_pred ccccccCc-------CCCCCCCCChhHHHHHHHHHHHHHh-h---CCCCEEEEecCceeccCCCCCcChhHHHHHHH-HH
Q psy4557 470 EDYTVADF-------DDFMTTTSGYGQSKIVSEYLVLNAG-Q---MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL-KA 537 (958)
Q Consensus 470 e~~~~~~~-------~~~~~~~~gY~~SK~~aE~lv~~a~-~---~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~-~~ 537 (958)
+.....+. +....+.+.|+.||+..|.+++... + .|++++++|||.++|+... .++.... ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~------~~~~~~~~~~ 202 (255)
T 2dkn_A 129 EAMLAGDEARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQ------ASKADPRYGE 202 (255)
T ss_dssp HHHHHTCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHH------HHHHCTTTHH
T ss_pred hhhcccchhhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhh------hcccchhhHH
Confidence 00000000 0000134589999999999987643 2 5999999999999986421 0000000 00
Q ss_pred HHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCCC
Q psy4557 538 ITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPIH 586 (958)
Q Consensus 538 ~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~~ 586 (958)
... ...+ ...+++++|++|++++.++... ...+.+|++.+...++
T Consensus 203 ~~~-~~~~---~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~ 249 (255)
T 2dkn_A 203 STR-RFVA---PLGRGSEPREVAEAIAFLLGPQASFIHGSVLFVDGGMDAL 249 (255)
T ss_dssp HHH-SCCC---TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHH
T ss_pred HHH-HHHH---HhcCCCCHHHHHHHHHHHhCCCcccceeeEEEecCCeEee
Confidence 011 1111 1236899999999999988755 3457899998764443
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=183.38 Aligned_cols=173 Identities=16% Similarity=0.157 Sum_probs=136.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.+|+++||||+||||+++|++|+++|++|++++|+.+...+..+.+... +..+.++.+|+++.+++.++++. ++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~ 78 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDA-----HP 78 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHH-----SC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhc-----cC
Confidence 5689999999999999999999999999999999876655554444321 34577889999999999888865 57
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----------CCCC
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-----------PFAG 862 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-----------~~~~ 862 (958)
+|++|||||...... ..+.....+++|+.|+..+++++ .+. +.++||++||.+..- +...
T Consensus 79 ~d~vih~A~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~-~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~ 149 (341)
T 3enk_A 79 ITAAIHFAALKAVGE----SVAKPIEYYRNNLDSLLSLLRVM----RER-AVKRIVFSSSATVYGVPERSPIDETFPLSA 149 (341)
T ss_dssp CCEEEECCCCCCHHH----HHHCHHHHHHHHHHHHHHHHHHH----HHT-TCCEEEEEEEGGGBCSCSSSSBCTTSCCBC
T ss_pred CcEEEECccccccCc----cccChHHHHHHHHHHHHHHHHHH----HhC-CCCEEEEEecceEecCCCCCCCCCCCCCCC
Confidence 999999999864322 22345678899999998876654 323 357999999976542 2223
Q ss_pred ChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCC
Q psy4557 863 LAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTEL 903 (958)
Q Consensus 863 ~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~ 903 (958)
...|+.||++.+.+++.++.+++ |++++++.||.+..+.
T Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~lRp~~v~G~~ 188 (341)
T 3enk_A 150 TNPYGQTKLMAEQILRDVEAADP--SWRVATLRYFNPVGAH 188 (341)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCT--TCEEEEEEECEEECCC
T ss_pred CChhHHHHHHHHHHHHHHhhcCC--CceEEEEeeccccCCc
Confidence 46899999999999999998864 6999999999987763
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-17 Score=183.03 Aligned_cols=208 Identities=15% Similarity=0.144 Sum_probs=155.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh----hHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID----RLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~----~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
+++|+++||||+|+||++++++|+++|++|++++|+.. .++++.+.+... ...+.++.+|+++.+++.++++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--- 101 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--- 101 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT---
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc---
Confidence 56789999999999999999999999999999999753 444444433211 2457888999999988877664
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC-------
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA------- 861 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~------- 861 (958)
++|+||||||..... .+.++++..+++|+.|+..+++++.+ . +.++||++||.+...+.+
T Consensus 102 ----~~d~vih~A~~~~~~----~~~~~~~~~~~~n~~~~~~l~~a~~~----~-~~~~~v~~SS~~~~~~~~~~~~~E~ 168 (352)
T 1sb8_A 102 ----GVDYVLHQAALGSVP----RSINDPITSNATNIDGFLNMLIAARD----A-KVQSFTYAASSSTYGDHPGLPKVED 168 (352)
T ss_dssp ----TCSEEEECCSCCCHH----HHHHCHHHHHHHHTHHHHHHHHHHHH----T-TCSEEEEEEEGGGGTTCCCSSBCTT
T ss_pred ----CCCEEEECCcccCch----hhhhCHHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEeccHHhcCCCCCCCCCCC
Confidence 699999999975321 13466889999999999999998754 2 347999999987654332
Q ss_pred ----CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC---C--hhhhhhhc------cc----cCC
Q psy4557 862 ----GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST---D--RDVVDKYD------IS----KAV 922 (958)
Q Consensus 862 ----~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~---~--~~~~~~~~------~~----~~~ 922 (958)
....|+.+|++.+.+++.++.++ |++++++.||.+.++...... . ........ .. ...
T Consensus 169 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 245 (352)
T 1sb8_A 169 TIGKPLSPYAVTKYVNELYADVFSRCY---GFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSR 245 (352)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHc---CCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceE
Confidence 35689999999999999999886 799999999999998643210 0 00111100 00 012
Q ss_pred CCCCHHHHHHHHHHHhcC
Q psy4557 923 PVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 923 ~~~~p~~ia~~i~~~l~~ 940 (958)
.++.++|+|+++++++..
T Consensus 246 ~~i~v~Dva~a~~~~~~~ 263 (352)
T 1sb8_A 246 DFCYIENTVQANLLAATA 263 (352)
T ss_dssp CCEEHHHHHHHHHHHHTC
T ss_pred eeEEHHHHHHHHHHHHhc
Confidence 467899999999998765
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=172.55 Aligned_cols=196 Identities=18% Similarity=0.175 Sum_probs=144.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||+|+||++++++|+++|++|++++|+.++++.+ ...+.++.+|++|.+++.++++ .+|+
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-------~~~~~~~~~Dl~d~~~~~~~~~-------~~d~ 70 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE-------NEHLKVKKADVSSLDEVCEVCK-------GADA 70 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC-------CTTEEEECCCTTCHHHHHHHHT-------TCSE
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc-------cCceEEEEecCCCHHHHHHHhc-------CCCE
Confidence 6899999999999999999999999999999997754322 2468889999999998877764 5899
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC----------CChhh
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA----------GLAVY 866 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~----------~~~~Y 866 (958)
+|||||..... ...+++|+.++..+++++.. . +.+++|++||.++..+.+ ....|
T Consensus 71 vi~~a~~~~~~----------~~~~~~n~~~~~~l~~~~~~----~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~p~~~Y 135 (227)
T 3dhn_A 71 VISAFNPGWNN----------PDIYDETIKVYLTIIDGVKK----A-GVNRFLMVGGAGSLFIAPGLRLMDSGEVPENIL 135 (227)
T ss_dssp EEECCCC----------------CCSHHHHHHHHHHHHHHH----T-TCSEEEEECCSTTSEEETTEEGGGTTCSCGGGH
T ss_pred EEEeCcCCCCC----------hhHHHHHHHHHHHHHHHHHH----h-CCCEEEEeCChhhccCCCCCccccCCcchHHHH
Confidence 99999875211 13788899998888777643 2 346999999988655433 25789
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhh-hhccccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVD-KYDISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~-~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
+.+|++.+.+.+.++. ..|++++++.||.+.++............ .........++.++|+|+++++++.++...
T Consensus 136 ~~sK~~~e~~~~~~~~---~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~ai~~~l~~~~~~ 211 (227)
T 3dhn_A 136 PGVKALGEFYLNFLMK---EKEIDWVFFSPAADMRPGVRTGRYRLGKDDMIVDIVGNSHISVEDYAAAMIDELEHPKHH 211 (227)
T ss_dssp HHHHHHHHHHHHTGGG---CCSSEEEEEECCSEEESCCCCCCCEEESSBCCCCTTSCCEEEHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHhh---ccCccEEEEeCCcccCCCccccceeecCCCcccCCCCCcEEeHHHHHHHHHHHHhCcccc
Confidence 9999999999888765 46899999999999876432211000000 000011234578999999999999888743
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-17 Score=179.84 Aligned_cols=209 Identities=21% Similarity=0.227 Sum_probs=148.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHH--hhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTS--LQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~--l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
++|+++||||+|+||.+++++|+++|++|+++.|+.+..+++... +.....++.++.+|+++.+++.++++
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------- 76 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK------- 76 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT-------
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc-------
Confidence 679999999999999999999999999999999987754433221 11101257788999999988776653
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC------------
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF------------ 860 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~------------ 860 (958)
.+|+||||||... .... +.++.++++|+.|+..+++++.+.. ..++||++||.++..+.
T Consensus 77 ~~d~Vih~A~~~~---~~~~--~~~~~~~~~nv~gt~~ll~a~~~~~----~~~riV~~SS~~~~~~~~~~~~~~~E~~~ 147 (337)
T 2c29_D 77 GCTGVFHVATPMD---FESK--DPENEVIKPTIEGMLGIMKSCAAAK----TVRRLVFTSSAGTVNIQEHQLPVYDESCW 147 (337)
T ss_dssp TCSEEEECCCCCC---SSCS--SHHHHTHHHHHHHHHHHHHHHHHHS----CCCEEEEECCGGGTSCSSSCCSEECTTCC
T ss_pred CCCEEEEeccccC---CCCC--ChHHHHHHHHHHHHHHHHHHHHhCC----CccEEEEeeeHhhcccCCCCCcccCcccC
Confidence 4799999998642 1112 2346789999999999999887643 24799999998754321
Q ss_pred ----------CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhh----------hcccc
Q psy4557 861 ----------AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDK----------YDISK 920 (958)
Q Consensus 861 ----------~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~----------~~~~~ 920 (958)
+....|+.||++.+.+++.++.+ .|+++++|.||.|.++............. +....
T Consensus 148 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 224 (337)
T 2c29_D 148 SDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE---NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIR 224 (337)
T ss_dssp CCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH---HTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGGGHHHHT
T ss_pred CchhhhcccCCccchHHHHHHHHHHHHHHHHHH---cCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCccccccC
Confidence 12346999999999988877654 38999999999999987433211111000 00001
Q ss_pred CCCCCCHHHHHHHHHHHhcCCC
Q psy4557 921 AVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 921 ~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
..+++.++|+|+++++++..+.
T Consensus 225 ~~~~i~v~Dva~a~~~~~~~~~ 246 (337)
T 2c29_D 225 QGQFVHLDDLCNAHIYLFENPK 246 (337)
T ss_dssp EEEEEEHHHHHHHHHHHHHCTT
T ss_pred CCCEEEHHHHHHHHHHHhcCcc
Confidence 1236789999999999886653
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=166.64 Aligned_cols=189 Identities=15% Similarity=0.123 Sum_probs=135.4
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
.++||||+|+||++++++|+++|++|++++|+.+++.++. ...+.++.+|+++.++ +.++.+|+|
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~------~~~~~~~~~D~~d~~~---------~~~~~~d~v 66 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL------GATVATLVKEPLVLTE---------ADLDSVDAV 66 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT------CTTSEEEECCGGGCCH---------HHHTTCSEE
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc------CCCceEEecccccccH---------hhcccCCEE
Confidence 4899999999999999999999999999999987766442 2357788999998877 334679999
Q ss_pred EEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC--------------C
Q psy4557 798 VNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG--------------L 863 (958)
Q Consensus 798 InnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~--------------~ 863 (958)
|||||...... ...+|+.++ +.+++.+. ..+ +++|++||.++..+.+. .
T Consensus 67 i~~ag~~~~~~-----------~~~~n~~~~----~~l~~a~~-~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~ 129 (224)
T 3h2s_A 67 VDALSVPWGSG-----------RGYLHLDFA----THLVSLLR-NSD-TLAVFILGSASLAMPGADHPMILDFPESAASQ 129 (224)
T ss_dssp EECCCCCTTSS-----------CTHHHHHHH----HHHHHTCT-TCC-CEEEEECCGGGSBCTTCSSCGGGGCCGGGGGS
T ss_pred EECCccCCCcc-----------hhhHHHHHH----HHHHHHHH-HcC-CcEEEEecceeeccCCCCccccccCCCCCccc
Confidence 99999863211 124566665 45556565 334 89999999877655444 6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
..|+.+|++.+.+ .......|++++.|.||++.++..... ......... ......++.++|+|+++++++.++.
T Consensus 130 ~~y~~sK~~~e~~----~~~~~~~~i~~~ivrp~~v~g~~~~~~-~~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~ 204 (224)
T 3h2s_A 130 PWYDGALYQYYEY----QFLQMNANVNWIGISPSEAFPSGPATS-YVAGKDTLLVGEDGQSHITTGNMALAILDQLEHPT 204 (224)
T ss_dssp TTHHHHHHHHHHH----HHHTTCTTSCEEEEEECSBCCCCCCCC-EEEESSBCCCCTTSCCBCCHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHHHHHH----HHHHhcCCCcEEEEcCccccCCCcccC-ceecccccccCCCCCceEeHHHHHHHHHHHhcCcc
Confidence 7899999988854 223346799999999999998732111 000000000 0112346899999999999998875
Q ss_pred C
Q psy4557 943 H 943 (958)
Q Consensus 943 ~ 943 (958)
.
T Consensus 205 ~ 205 (224)
T 3h2s_A 205 A 205 (224)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=178.87 Aligned_cols=182 Identities=19% Similarity=0.232 Sum_probs=142.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||+++||++++++|+++|++|++++|+.++. + ...+.++.+|+++.+++.++++ ++|+
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~------~---~~~~~~~~~Dl~d~~~~~~~~~-------~~d~ 66 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGA------A---EAHEEIVACDLADAQAVHDLVK-------DCDG 66 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCC------C---CTTEEECCCCTTCHHHHHHHHT-------TCSE
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccc------c---CCCccEEEccCCCHHHHHHHHc-------CCCE
Confidence 6899999999999999999999999999999986531 1 1246788999999988877664 5899
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC------------CCh
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA------------GLA 864 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~------------~~~ 864 (958)
||||||... .+.|+..+++|+.|+..+++++.+ .+.++||++||.......+ ...
T Consensus 67 vi~~a~~~~--------~~~~~~~~~~n~~~~~~l~~a~~~-----~~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~~ 133 (267)
T 3ay3_A 67 IIHLGGVSV--------ERPWNDILQANIIGAYNLYEAARN-----LGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDS 133 (267)
T ss_dssp EEECCSCCS--------CCCHHHHHHHTHHHHHHHHHHHHH-----TTCCEEEEEEEGGGSTTSBTTSCBCTTSCCCCCS
T ss_pred EEECCcCCC--------CCCHHHHHHHHHHHHHHHHHHHHH-----hCCCEEEEeCCHHHhCCCCCCCCCCCCCCCCCCC
Confidence 999999752 234688999999999999988754 2347999999987654322 347
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcc-cCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDV-KTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v-~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
.|+.+|++.+.+++.++. ..|+++++|.||.+ .+++ .... ...++.++|+|++++.++..+..
T Consensus 134 ~Y~~sK~~~e~~~~~~~~---~~gi~~~~lrp~~v~~~~~-----~~~~--------~~~~~~~~dva~~~~~~~~~~~~ 197 (267)
T 3ay3_A 134 LYGLSKCFGEDLASLYYH---KFDIETLNIRIGSCFPKPK-----DARM--------MATWLSVDDFMRLMKRAFVAPKL 197 (267)
T ss_dssp HHHHHHHHHHHHHHHHHH---TTCCCEEEEEECBCSSSCC-----SHHH--------HHHBCCHHHHHHHHHHHHHSSCC
T ss_pred hHHHHHHHHHHHHHHHHH---HcCCCEEEEeceeecCCCC-----CCCe--------eeccccHHHHHHHHHHHHhCCCC
Confidence 899999999999998864 46899999999998 4432 1111 11247899999999998876643
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=171.50 Aligned_cols=233 Identities=11% Similarity=0.085 Sum_probs=162.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.+++||||||+|+||.+++++|++++ .+|+++.|.... .+.+.+ ... . ..++.++.+|++.
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~---~~~~~~---~~~------~-~~~~~~~~~D~~~----- 75 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDH---GQKVCN---NIG------S-PDVISFVHCDVTK----- 75 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH---HHHHHH---HHC------C-TTTEEEEECCTTC-----
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCChhH---HHHHHH---HhC------C-CCceEEEECCCCC-----
Confidence 56789999999999999999999874 688888775221 112211 110 0 1378899999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc---------cChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEec
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI---------LPYNALYKSNVLATKNLIEFSFL----NKIKSFHYVST 457 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~---------~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST 457 (958)
.+....+.+ .+|+|||||+..... ..+.....+|+.|+.++++.+.. .+..+|+++||
T Consensus 76 --~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 153 (278)
T 2bgk_A 76 --DEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTAS 153 (278)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEee
Confidence 345555543 799999999975421 12345678999999999987754 34579999999
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcCh-hHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNL-VDLNL 532 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~-~d~~~ 532 (958)
.+.+.... .....|+.||+..|.+++..+ ..|++++++|||.++++........ .....
T Consensus 154 ~~~~~~~~----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~ 217 (278)
T 2bgk_A 154 ISSFTAGE----------------GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVE 217 (278)
T ss_dssp GGGTCCCT----------------TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHH
T ss_pred ccccCCCC----------------CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHH
Confidence 88765321 123479999999999987643 3599999999999999865433221 11111
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCCCHHHHHHHHH
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPIHIKTLVSVLN 595 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~~~l~~~l~ 595 (958)
.+ ... .|. ....++.++++|++++.++... ...+.+|++..+..+++.++.+.+.
T Consensus 218 ~~----~~~--~~~--~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~ 274 (278)
T 2bgk_A 218 EL----AHQ--AAN--LKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALK 274 (278)
T ss_dssp HH----HHH--TCS--SCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSC
T ss_pred Hh----hhc--ccc--cccccCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhh
Confidence 11 111 111 1235789999999999988643 2357899999888899999988764
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-17 Score=192.86 Aligned_cols=112 Identities=25% Similarity=0.369 Sum_probs=106.7
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
..++.++|+++++++||++|+++ +++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~-~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 83 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMV-DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEE
T ss_pred cCCHHHHHHHHHHHCCCceEEEE-CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence 45799999999999999999987 56899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
|||||++|.+|+.+++++++++++|++.++.+.
T Consensus 84 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 84 LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp EECCTTSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred EecCCCCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 999999999999999999999999999876654
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-17 Score=179.80 Aligned_cols=196 Identities=15% Similarity=0.190 Sum_probs=142.4
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
+++||||+|+||++++++|+++|++|++++|+.++.+++ .. ..+.++.+|+++.+++.++++ ++|+|
T Consensus 15 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l----~~--~~~~~~~~Dl~d~~~~~~~~~-------~~d~v 81 (342)
T 2x4g_A 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL----AY--LEPECRVAEMLDHAGLERALR-------GLDGV 81 (342)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGG----GG--GCCEEEECCTTCHHHHHHHTT-------TCSEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhh----cc--CCeEEEEecCCCHHHHHHHHc-------CCCEE
Confidence 799999999999999999999999999999987654432 11 246778999999988776653 58999
Q ss_pred EEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC---------------
Q psy4557 798 VNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG--------------- 862 (958)
Q Consensus 798 InnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~--------------- 862 (958)
|||||... .+.+.++..+++|+.|+..+++++.+. +.++||++||.+.....++
T Consensus 82 ih~a~~~~------~~~~~~~~~~~~n~~~~~~l~~a~~~~-----~~~~~v~~SS~~~~~~~~~~~~~~E~~~~~p~~~ 150 (342)
T 2x4g_A 82 IFSAGYYP------SRPRRWQEEVASALGQTNPFYAACLQA-----RVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPS 150 (342)
T ss_dssp EEC------------------CHHHHHHHHHHHHHHHHHHH-----TCSCEEEECCGGGSCCCTTSSCBCTTCCCSSCCT
T ss_pred EECCccCc------CCCCCHHHHHHHHHHHHHHHHHHHHHc-----CCCeEEEECCHHhhCcCCCCCCCCCCCCCCcccc
Confidence 99999753 234567889999999999999988763 2479999999887654433
Q ss_pred -ChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCC-CCCCChhhhhhhccc-------cCCCCCCHHHHHHH
Q psy4557 863 -LAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELL-SHSTDRDVVDKYDIS-------KAVPVLTTKEISQS 933 (958)
Q Consensus 863 -~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~-~~~~~~~~~~~~~~~-------~~~~~~~p~~ia~~ 933 (958)
...|+.+|++.+.+.+.++. . |+++++|.||.+.++.. ... ........... ....++.++|+|++
T Consensus 151 ~~~~Y~~sK~~~e~~~~~~~~---~-g~~~~ilrp~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~ 225 (342)
T 2x4g_A 151 GKSSYVLCKWALDEQAREQAR---N-GLPVVIGIPGMVLGELDIGPT-TGRVITAIGNGEMTHYVAGQRNVIDAAEAGRG 225 (342)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH---T-TCCEEEEEECEEECSCCSSCS-TTHHHHHHHTTCCCEEECCEEEEEEHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHhh---c-CCcEEEEeCCceECCCCcccc-HHHHHHHHHcCCCccccCCCcceeeHHHHHHH
Confidence 67899999999999999876 3 89999999999999865 211 11111111100 11125689999999
Q ss_pred HHHHhcCCC
Q psy4557 934 IIFALLQPS 942 (958)
Q Consensus 934 i~~~l~~~~ 942 (958)
+++++..+.
T Consensus 226 ~~~~~~~~~ 234 (342)
T 2x4g_A 226 LLMALERGR 234 (342)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHhCCC
Confidence 999887654
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-17 Score=181.37 Aligned_cols=207 Identities=14% Similarity=0.150 Sum_probs=139.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEec-Chhh---HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR-RIDR---LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r-~~~~---l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
||+++||||+|+||++++++|+++|++|+++.| +.+. ...+. .+.....++.++.+|+++.+++.++++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~------ 73 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLT-NLPGASEKLHFFNADLSNPDSFAAAIE------ 73 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHH-TSTTHHHHEEECCCCTTCGGGGHHHHT------
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHH-hhhccCCceEEEecCCCCHHHHHHHHc------
Confidence 689999999999999999999999999999988 6532 22221 111111246778899999988877664
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC----------
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA---------- 861 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~---------- 861 (958)
.+|+|||||+.. .. ...+.++.++++|+.|++.+++++.+. .+.++||++||.++..+.+
T Consensus 74 -~~d~vih~A~~~---~~--~~~~~~~~~~~~nv~gt~~l~~aa~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~e~~ 143 (322)
T 2p4h_X 74 -GCVGIFHTASPI---DF--AVSEPEEIVTKRTVDGALGILKACVNS----KTVKRFIYTSSGSAVSFNGKDKDVLDESD 143 (322)
T ss_dssp -TCSEEEECCCCC-------------CHHHHHHHHHHHHHHHHHTTC----SSCCEEEEEEEGGGTSCSSSCCSEECTTC
T ss_pred -CCCEEEEcCCcc---cC--CCCChHHHHHHHHHHHHHHHHHHHHhc----CCccEEEEeccHHHcccCCCCCeecCCcc
Confidence 479999999742 11 111224679999999999999987542 1347999999987543221
Q ss_pred ------------CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhh---h-c----cc-c
Q psy4557 862 ------------GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDK---Y-D----IS-K 920 (958)
Q Consensus 862 ------------~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~---~-~----~~-~ 920 (958)
....|+.||++.+.+.+.++.+ .|++++++.||.|.+++............ . . .. .
T Consensus 144 ~~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 220 (322)
T 2p4h_X 144 WSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQ---NGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVT 220 (322)
T ss_dssp CCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH---TTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGCCEE
T ss_pred ccchhhhcccCcccccHHHHHHHHHHHHHHHHHh---cCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccCcCC
Confidence 1116999999777776655433 58999999999999997543211111000 0 0 00 0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCC
Q psy4557 921 AVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 921 ~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
...++.++|+|+++++++..+.
T Consensus 221 ~~~~i~v~Dva~a~~~~~~~~~ 242 (322)
T 2p4h_X 221 RFHMVHVDDVARAHIYLLENSV 242 (322)
T ss_dssp EEEEEEHHHHHHHHHHHHHSCC
T ss_pred CcCEEEHHHHHHHHHHHhhCcC
Confidence 0136789999999999886543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=163.09 Aligned_cols=187 Identities=17% Similarity=0.145 Sum_probs=137.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
++|+++||||+++||++++++|+++|++|++++|+.+++... ....+.++.+|+++.+++.++++ .+
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~-------~~ 68 (206)
T 1hdo_A 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE------GPRPAHVVVGDVLQAADVDKTVA-------GQ 68 (206)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS------SCCCSEEEESCTTSHHHHHHHHT-------TC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc------cCCceEEEEecCCCHHHHHHHHc-------CC
Confidence 347899999999999999999999999999999997654321 13457788999999988776654 47
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC----CChhhhHHH
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA----GLAVYTGTK 870 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~----~~~~Y~asK 870 (958)
|++|||||..... +. .++|+.++..+++++.. . +.++||++||.......+ ....|+.+|
T Consensus 69 d~vi~~a~~~~~~---~~--------~~~n~~~~~~~~~~~~~----~-~~~~~v~~Ss~~~~~~~~~~~~~~~~y~~~K 132 (206)
T 1hdo_A 69 DAVIVLLGTRNDL---SP--------TTVMSEGARNIVAAMKA----H-GVDKVVACTSAFLLWDPTKVPPRLQAVTDDH 132 (206)
T ss_dssp SEEEECCCCTTCC---SC--------CCHHHHHHHHHHHHHHH----H-TCCEEEEECCGGGTSCTTCSCGGGHHHHHHH
T ss_pred CEEEECccCCCCC---Cc--------cchHHHHHHHHHHHHHH----h-CCCeEEEEeeeeeccCcccccccchhHHHHH
Confidence 9999999975431 11 13788888877776643 2 347999999997655444 567899999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcc-cCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDV-KTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v-~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
++++.+.+. .|++++++.||++ .+++.... ...........++.++|+|+++++++.++.
T Consensus 133 ~~~e~~~~~-------~~i~~~~lrp~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~ 193 (206)
T 1hdo_A 133 IRMHKVLRE-------SGLKYVAVMPPHIGDQPLTGAY-----TVTLDGRGPSRVISKHDLGHFMLRCLTTDE 193 (206)
T ss_dssp HHHHHHHHH-------TCSEEEEECCSEEECCCCCSCC-----EEESSSCSSCSEEEHHHHHHHHHHTTSCST
T ss_pred HHHHHHHHh-------CCCCEEEEeCCcccCCCCCcce-----EecccCCCCCCccCHHHHHHHHHHHhcCcc
Confidence 999998742 6899999999998 34432111 000111111356789999999999887764
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=180.54 Aligned_cols=172 Identities=21% Similarity=0.229 Sum_probs=134.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHH-HcCCeEEEEecChhh---------HHHHHHHhhcC-----CCc---EEEEEecCCCH
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLV-TLGAKVVAVARRIDR---------LENLKTSLQNA-----PGS---IIVKKLDVTIE 777 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la-~~Ga~Vi~~~r~~~~---------l~~~~~~l~~~-----~~~---~~~~~~Dvs~~ 777 (958)
+++++||||+|+||++++++|+ ++|++|++++|+... .+.+.+.+... ... +.++.+|+++.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 4589999999999999999999 999999999987543 34443323222 123 77889999999
Q ss_pred HHHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc
Q psy4557 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV 857 (958)
Q Consensus 778 ~~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~ 857 (958)
+++.++++ .++++|+||||||...... +.+.++.++++|+.|++.+++++.. . +.++||++||.+..
T Consensus 82 ~~~~~~~~----~~~~~d~vih~A~~~~~~~----~~~~~~~~~~~Nv~g~~~ll~a~~~----~-~~~~iv~~SS~~v~ 148 (397)
T 1gy8_A 82 DFLNGVFT----RHGPIDAVVHMCAFLAVGE----SVRDPLKYYDNNVVGILRLLQAMLL----H-KCDKIIFSSSAAIF 148 (397)
T ss_dssp HHHHHHHH----HSCCCCEEEECCCCCCHHH----HHHCHHHHHHHHHHHHHHHHHHHHH----T-TCCEEEEEEEGGGT
T ss_pred HHHHHHHH----hcCCCCEEEECCCccCcCc----chhhHHHHHHHHhHHHHHHHHHHHH----h-CCCEEEEECCHHHh
Confidence 98877665 3677999999999864321 3466889999999999999887532 2 34799999997643
Q ss_pred CCCC------------------CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCC
Q psy4557 858 RPFA------------------GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTEL 903 (958)
Q Consensus 858 ~~~~------------------~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~ 903 (958)
-... ....|+.||++.+.+++.++.++ |++++++.||.+..+.
T Consensus 149 g~~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---gi~~~ilRp~~v~G~~ 209 (397)
T 1gy8_A 149 GNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY---GIKGICLRYFNACGAH 209 (397)
T ss_dssp BSCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECCC
T ss_pred CCCCcccccccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHH---CCcEEEEeccceeCCC
Confidence 2211 25789999999999999999887 8999999999997663
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=166.76 Aligned_cols=203 Identities=11% Similarity=0.077 Sum_probs=140.1
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|||||||||||++|+++|++++..+|+++.|...... .....++.++.+|++
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~------------------~~~~~~~~~~~~Dl~------- 77 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIH------------------KPYPTNSQIIMGDVL------- 77 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSC------------------SSCCTTEEEEECCTT-------
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhc------------------ccccCCcEEEEecCC-------
Confidence 5689999999999999999999876578999998643210 112357889999987
Q ss_pred cHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcC
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFD 478 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~ 478 (958)
+.+.+..+.+.+|+|||+|+...+ ..+++++++.+++.+.++|+|+||.++|+.......... .
T Consensus 78 d~~~~~~~~~~~D~vv~~a~~~~~-----------~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~----~- 141 (236)
T 3qvo_A 78 NHAALKQAMQGQDIVYANLTGEDL-----------DIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWN----N- 141 (236)
T ss_dssp CHHHHHHHHTTCSEEEEECCSTTH-----------HHHHHHHHHHHHHTTCCEEEEECCCCC------------------
T ss_pred CHHHHHHHhcCCCEEEEcCCCCch-----------hHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccch----h-
Confidence 347788888899999999986321 245779999998888899999999999875422111100 0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHH
Q psy4557 479 DFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDF 558 (958)
Q Consensus 479 ~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~ 558 (958)
.....|...|..+|..+. +.|++++++|||.++++...+.... . ......-.++.+++
T Consensus 142 ---~~~~~~~~~~~~~~~~l~---~~gi~~~~vrPg~i~~~~~~~~~~~--------------~--~~~~~~~~~i~~~D 199 (236)
T 3qvo_A 142 ---AVIGEPLKPFRRAADAIE---ASGLEYTILRPAWLTDEDIIDYELT--------------S--RNEPFKGTIVSRKS 199 (236)
T ss_dssp ------CGGGHHHHHHHHHHH---TSCSEEEEEEECEEECCSCCCCEEE--------------C--TTSCCSCSEEEHHH
T ss_pred ---hcccchHHHHHHHHHHHH---HCCCCEEEEeCCcccCCCCcceEEe--------------c--cCCCCCCcEECHHH
Confidence 112245566677776663 5699999999999998754322100 0 00111235789999
Q ss_pred HHHHHHHHhcCcC-CCCceEEecCCCC
Q psy4557 559 LTKSLVQLTTNVN-NANKIYNFINTNP 584 (958)
Q Consensus 559 va~aiv~l~~~~~-~~~~v~h~~n~~~ 584 (958)
+|++++.++..+. ..+++|++.+|..
T Consensus 200 vA~~i~~ll~~~~~~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 200 VAALITDIIDKPEKHIGENIGINQPGT 226 (236)
T ss_dssp HHHHHHHHHHSTTTTTTEEEEEECSSC
T ss_pred HHHHHHHHHcCcccccCeeEEecCCCC
Confidence 9999999987665 4688999998753
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.1e-17 Score=192.12 Aligned_cols=116 Identities=21% Similarity=0.326 Sum_probs=108.2
Q ss_pred CCccccHHHHHHHHHHhCCCCeEEEeCCCc--eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q psy4557 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGR--SITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (958)
Q Consensus 9 ~~~~~~l~~~~~~~a~~~pd~~Al~~~~~~--~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k 86 (958)
++...++.++|.++++++|+++|+++. ++ ++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~-~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 90 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP-STDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAK 90 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG-GGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC-CcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHH
Confidence 445678999999999999999999874 45 899999999999999999999999999999999999999999999999
Q ss_pred HCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 87 ~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+|+++|||||++|.+|+.+++++++++++|++....+.+
T Consensus 91 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (517)
T 3r44_A 91 LGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVI 129 (517)
T ss_dssp HTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred hCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHH
Confidence 999999999999999999999999999999998766544
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-16 Score=178.62 Aligned_cols=179 Identities=14% Similarity=0.038 Sum_probs=136.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhH-----------------HHHHHHhhcCCCcEEEEEecCC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRL-----------------ENLKTSLQNAPGSIIVKKLDVT 775 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l-----------------~~~~~~l~~~~~~~~~~~~Dvs 775 (958)
-..+..++||||+|.||.++|++|+++|++|++++|+.... +.+..........+.++.+|++
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~ 87 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDIC 87 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTT
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCC
Confidence 35788999999999999999999999999999999875331 1121111111345778899999
Q ss_pred CHHHHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Q psy4557 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNA 855 (958)
Q Consensus 776 ~~~~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~ 855 (958)
+.+++.++++.. ++|+||||||...... ...+++.|..++++|+.|+..+++++.+. +.+.+||++||.+
T Consensus 88 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~----~~~~~~V~~SS~~ 157 (404)
T 1i24_A 88 DFEFLAESFKSF-----EPDSVVHFGEQRSAPY-SMIDRSRAVYTQHNNVIGTLNVLFAIKEF----GEECHLVKLGTMG 157 (404)
T ss_dssp SHHHHHHHHHHH-----CCSEEEECCSCCCHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCEEEEECCGG
T ss_pred CHHHHHHHHhcc-----CCCEEEECCCCCCccc-hhhCccchhhhHHHHHHHHHHHHHHHHHh----CCCcEEEEeCcHH
Confidence 999988887654 6999999999764322 22367778899999999999999988653 2224999999986
Q ss_pred CcC------------------------CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCC
Q psy4557 856 GVR------------------------PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELL 904 (958)
Q Consensus 856 g~~------------------------~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~ 904 (958)
..- +......|+.||++.+.+++.++.++ |+++++|.||.|.++..
T Consensus 158 vyg~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~ivrp~~v~Gp~~ 227 (404)
T 1i24_A 158 EYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVKT 227 (404)
T ss_dssp GGCCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECSCC
T ss_pred HhCCCCCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhc---CCeEEEEecceeeCCCC
Confidence 432 22345679999999999999998876 89999999999998753
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=168.43 Aligned_cols=222 Identities=12% Similarity=0.137 Sum_probs=152.3
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++|||||||||||.+++++|+++ +.+|+++.|... ..+.+.+.+.. ...++.++.+|++.
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~---~~~~~~~~~~~---------~~~~~~~~~~D~~~----- 71 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINAD---AANHVVDEIQQ---------LGGQAFACRCDITS----- 71 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEESCHH---HHHHHHHHHHH---------TTCCEEEEECCTTC-----
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEcCCHH---HHHHHHHHHHH---------hCCceEEEEcCCCC-----
Confidence 4578999999999999999999976 478999888532 12222222211 13478888999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCc---cc---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNL---IL---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSI 460 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~---~~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v 460 (958)
.+....+.+ .+|+|||+|+.... .. .+....++|+.|+.++++.+. +.+.++|+++||.+.
T Consensus 72 --~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~ 149 (255)
T 1fmc_A 72 --EQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAA 149 (255)
T ss_dssp --HHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred --HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhh
Confidence 345555543 89999999997543 11 234567899999999988774 334578999999877
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
+... .+...|+.||+..|.+++..+ ..|++++++|||.++++....... .++. +
T Consensus 150 ~~~~-----------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~-~~~~----~ 207 (255)
T 1fmc_A 150 ENKN-----------------INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVIT-PEIE----Q 207 (255)
T ss_dssp TCCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCC-HHHH----H
T ss_pred cCCC-----------------CCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhccC-hHHH----H
Confidence 6421 123579999999999987643 349999999999999864322111 1111 1
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCCCH
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPIHI 587 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~~~ 587 (958)
.... + .|- ..+..++++|++++.++.... ..+++|++.+....++
T Consensus 208 ~~~~-~-~~~----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 208 KMLQ-H-TPI----RRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp HHHH-T-CSS----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCCC
T ss_pred HHHh-c-CCc----ccCCCHHHHHHHHHHHhCCccccCCCcEEEECCceeccC
Confidence 1111 1 231 246789999999999886532 2478999988776654
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=180.09 Aligned_cols=212 Identities=17% Similarity=0.126 Sum_probs=149.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh-----HHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-----LENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~-----l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
|+++||||+|+||++++++|+++|++|++++|+.+. ++.+.+.... ....+.++.+|+++.+++.++++.+
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 101 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV--- 101 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH---
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhc---
Confidence 789999999999999999999999999999998543 2222111110 1245778899999999988887765
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-----------
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP----------- 859 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~----------- 859 (958)
++|+||||||..... .+.++++..+++|+.|+..+++++.+.+. ++.++||++||.+..-.
T Consensus 102 --~~d~vih~A~~~~~~----~~~~~~~~~~~~N~~g~~~l~~a~~~~~~--~~~~~iv~~SS~~~~~~~~~~~~~E~~~ 173 (375)
T 1t2a_A 102 --KPTEIYNLGAQSHVK----ISFDLAEYTADVDGVGTLRLLDAVKTCGL--INSVKFYQASTSELYGKVQEIPQKETTP 173 (375)
T ss_dssp --CCSEEEECCSCCCHH----HHHHSHHHHHHHHTHHHHHHHHHHHHTTC--TTTCEEEEEEEGGGTCSCSSSSBCTTSC
T ss_pred --CCCEEEECCCccccc----ccccCHHHHHHHHHHHHHHHHHHHHHhCC--CccceEEEecchhhhCCCCCCCCCccCC
Confidence 689999999975321 13466889999999999999999877543 22379999999876432
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh----hhhhhh--c----cc-----cCCCC
Q psy4557 860 FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR----DVVDKY--D----IS-----KAVPV 924 (958)
Q Consensus 860 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~----~~~~~~--~----~~-----~~~~~ 924 (958)
......|+.||++.+.+++.++.++ |+.+..+.|+.+..+........ ...... . .. ....+
T Consensus 174 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~ 250 (375)
T 1t2a_A 174 FYPRSPYGAAKLYAYWIVVNFREAY---NLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDW 250 (375)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeee
Confidence 2245689999999999999999875 68888788776655432111100 000000 0 00 01235
Q ss_pred CCHHHHHHHHHHHhcCCC
Q psy4557 925 LTTKEISQSIIFALLQPS 942 (958)
Q Consensus 925 ~~p~~ia~~i~~~l~~~~ 942 (958)
+..+|+|++++.++..+.
T Consensus 251 i~v~Dva~a~~~~~~~~~ 268 (375)
T 1t2a_A 251 GHAKDYVEAMWLMLQNDE 268 (375)
T ss_dssp EEHHHHHHHHHHHHHSSS
T ss_pred EEHHHHHHHHHHHHhcCC
Confidence 678999999999887654
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-17 Score=193.45 Aligned_cols=113 Identities=30% Similarity=0.566 Sum_probs=106.7
Q ss_pred ccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 11 ~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
...+++++|+++++++||++|+++ .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 151 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLH-EADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGG 151 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEEC-CCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence 346899999999999999999987 5678999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
+||+||+++.+|+.+++++++++++|++..+...
T Consensus 152 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 185 (570)
T 4gr5_A 152 YTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR 185 (570)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS
T ss_pred EEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc
Confidence 9999999999999999999999999999876543
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=165.29 Aligned_cols=186 Identities=17% Similarity=0.144 Sum_probs=135.4
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++++++|+++ +|+++.|... ..+++.+ .. .. .++.+|++.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~---~~~~~~~---~~----------~~-~~~~~D~~~------- 53 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAG---ALAELAR---EV----------GA-RALPADLAD------- 53 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHH---HHHHHHH---HH----------TC-EECCCCTTS-------
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHH---HHHHHHH---hc----------cC-cEEEeeCCC-------
Confidence 36899999999999999999977 8999888522 1222211 11 11 677888873
Q ss_pred HHHHHHHhc---ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCc
Q psy4557 400 QDEYVSLSY---EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQ 469 (958)
Q Consensus 400 ~~~~~~l~~---~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~ 469 (958)
.+....+.+ .+|+|||+|+..... ..+.....+|+.|+.++++.+...+.++|+++||.+++.+.
T Consensus 54 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~~----- 128 (207)
T 2yut_A 54 ELEAKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQV----- 128 (207)
T ss_dssp HHHHHHHHHHHCSEEEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHSS-----
T ss_pred HHHHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccCC-----
Confidence 456666666 899999999975331 23455778999999999999976666799999998876321
Q ss_pred ccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-h---CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC
Q psy4557 470 EDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-Q---MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP 545 (958)
Q Consensus 470 e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~---~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P 545 (958)
.+...|+.||+..|.+++..+ + .|++++++|||.++++...+ .+
T Consensus 129 ------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~~-----------------~~--- 176 (207)
T 2yut_A 129 ------------PGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWAP-----------------LG--- 176 (207)
T ss_dssp ------------TTBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGGG-----------------GT---
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCccc-----------------cC---
Confidence 123579999999999987643 2 59999999999998864100 01
Q ss_pred CCCCcCCcccHHHHHHHHHHHhcCcC
Q psy4557 546 DIDWYLEFTPVDFLTKSLVQLTTNVN 571 (958)
Q Consensus 546 ~~~~~~~~~pVD~va~aiv~l~~~~~ 571 (958)
.....+++++++|++++.+...+.
T Consensus 177 --~~~~~~~~~~dva~~~~~~~~~~~ 200 (207)
T 2yut_A 177 --GPPKGALSPEEAARKVLEGLFREP 200 (207)
T ss_dssp --SCCTTCBCHHHHHHHHHHHHC--C
T ss_pred --CCCCCCCCHHHHHHHHHHHHhCCC
Confidence 122568999999999999986553
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=185.31 Aligned_cols=204 Identities=15% Similarity=0.143 Sum_probs=147.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh---hHHHHHHHhhc---------CCCcEEEEEecCCCHHHHH
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID---RLENLKTSLQN---------APGSIIVKKLDVTIENDVK 781 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~---~l~~~~~~l~~---------~~~~~~~~~~Dvs~~~~v~ 781 (958)
..+|+++||||+|+||++++++|+++|++|+++.|+.+ .++.+.+.+.. ...++.++.+|+++.+++.
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 46789999999999999999999999999999999977 44444443322 1356889999999987776
Q ss_pred HHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc----
Q psy4557 782 KVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV---- 857 (958)
Q Consensus 782 ~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~---- 857 (958)
.++++|+||||||... ..+.++..+++|+.|+..+++++.+ ..++||++||...-
T Consensus 147 --------~~~~~d~Vih~A~~~~-------~~~~~~~~~~~Nv~g~~~l~~aa~~------~~~~~v~~SS~~~G~~~~ 205 (427)
T 4f6c_A 147 --------LPENMDTIIHAGARTD-------HFGDDDEFEKVNVQGTVDVIRLAQQ------HHARLIYVSTISVGTYFD 205 (427)
T ss_dssp --------CSSCCSEEEECCCCC--------------CHHHHHHHHHHHHHHHHHH------TTCEEEEEEEGGGGSEEC
T ss_pred --------CcCCCCEEEECCcccC-------CCCCHHHHHHHHHHHHHHHHHHHHh------cCCcEEEECchHhCCCcc
Confidence 5689999999999863 2356889999999999999998865 24699999998860
Q ss_pred --------------CCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh--------hhhhh
Q psy4557 858 --------------RPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR--------DVVDK 915 (958)
Q Consensus 858 --------------~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~--------~~~~~ 915 (958)
.+......|+.||++.+.+++.++. .|+++++|.||.|..+........ .....
T Consensus 206 ~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~ 281 (427)
T 4f6c_A 206 IDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN----NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMND 281 (427)
T ss_dssp SSCSCCEECTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH----TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHH
T ss_pred CCCCCccccccccccCCCCCCchHHHHHHHHHHHHHHHH----cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHH
Confidence 0122567899999999999998754 689999999999988764432111 01111
Q ss_pred hc----c-----ccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 916 YD----I-----SKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 916 ~~----~-----~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.. . .....++..+|+|+++++++..+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~v~v~DvA~ai~~~~~~~~ 317 (427)
T 4f6c_A 282 LLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNT 317 (427)
T ss_dssp HHHSSEEEHHHHTCEECCEEHHHHHHHHHHHTTSCC
T ss_pred HHhcCCCCCccccceEEEeeHHHHHHHHHHHHcCCC
Confidence 00 0 112236778999999999887665
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=180.11 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=148.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh-----HHHHHHHhhcCCC-cEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-----LENLKTSLQNAPG-SIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~-----l~~~~~~l~~~~~-~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
|+++||||+|+||.+++++|+++|++|++++|+.++ ++.+...+...+. .+.++.+|+++.+++.++++.+
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 105 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI--- 105 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH---
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhc---
Confidence 789999999999999999999999999999998653 3322222211122 5778899999999988887765
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC----------CC
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR----------PF 860 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~----------~~ 860 (958)
++|+||||||..... .+.++++..+++|+.|+..+++++.+.+.++++.++||++||.+..- +.
T Consensus 106 --~~d~Vih~A~~~~~~----~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~~~~E~~~~ 179 (381)
T 1n7h_A 106 --KPDEVYNLAAQSHVA----VSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPF 179 (381)
T ss_dssp --CCSEEEECCSCCCHH----HHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCC
T ss_pred --CCCEEEECCcccCcc----ccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCCCCCCCCCC
Confidence 689999999975421 23466889999999999999999999876433457999999987432 23
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHhCCC---CcEEEEEECCcccCCCCCCCCChhhhhh---h---cc-----ccCCCCCC
Q psy4557 861 AGLAVYTGTKYFIEGISGALRQEVSDR---NIKVTCIQAGDVKTELLSHSTDRDVVDK---Y---DI-----SKAVPVLT 926 (958)
Q Consensus 861 ~~~~~Y~asKaa~~~l~~~la~el~~~---gIrv~~v~PG~v~T~~~~~~~~~~~~~~---~---~~-----~~~~~~~~ 926 (958)
.....|+.+|++.+.+++.++.+++-. .+.++.+.||...+.+... ....... . .. .....++.
T Consensus 180 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~--~~~~~~~~~~g~~~~~~~g~~~~~~~~v~ 257 (381)
T 1n7h_A 180 HPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRK--ITRALGRIKVGLQTKLFLGNLQASRDWGF 257 (381)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHH--HHHHHHHHHHTSCCCEEESCTTCEEECEE
T ss_pred CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHH--HHHHHHHHHcCCCCeEEeCCCCceeeeEE
Confidence 446789999999999999999886321 1122344455332211000 0000000 0 00 01123577
Q ss_pred HHHHHHHHHHHhcCCC
Q psy4557 927 TKEISQSIIFALLQPS 942 (958)
Q Consensus 927 p~~ia~~i~~~l~~~~ 942 (958)
++|+|+++++++..+.
T Consensus 258 v~Dva~a~~~~~~~~~ 273 (381)
T 1n7h_A 258 AGDYVEAMWLMLQQEK 273 (381)
T ss_dssp HHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999887654
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=191.76 Aligned_cols=116 Identities=25% Similarity=0.597 Sum_probs=107.8
Q ss_pred CCccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHC
Q psy4557 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (958)
Q Consensus 9 ~~~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G 88 (958)
++...++.++|+++++++||++|+++ .++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 35 ~~~~~~l~~~l~~~a~~~p~~~Al~~-~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 113 (563)
T 1amu_A 35 YPRDKTIHQLFEEQVSKRPNNVAIVC-ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAG 113 (563)
T ss_dssp CCTTCCHHHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHCCCCeEEEe-CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 34446899999999999999999986 46789999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 89 ~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+++|||||.++.+|+.+++++++++++|++.++.+.+
T Consensus 114 av~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 114 GAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 9999999999999999999999999999998765443
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-17 Score=191.57 Aligned_cols=116 Identities=15% Similarity=0.251 Sum_probs=108.1
Q ss_pred CccccHHHHHHHHHHhCCCCeEEEeC-CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHC
Q psy4557 10 DAEGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (958)
Q Consensus 10 ~~~~~l~~~~~~~a~~~pd~~Al~~~-~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G 88 (958)
+...+++++|.++++++|+++|+++. +++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~G 98 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRG 98 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence 33467999999999999999999874 35789999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 89 ~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+++||+||.++.+|+.+++++++++++|++..+.+.+
T Consensus 99 av~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 99 AIITAANPFSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 9999999999999999999999999999998766544
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-17 Score=192.62 Aligned_cols=114 Identities=18% Similarity=0.345 Sum_probs=106.8
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCC-------ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDG-------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAI 84 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~-------~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~ 84 (958)
..++.++|+++++++||++|+++.++ +++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 97 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYAL 97 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 46799999999999999999987431 78999999999999999999999999999999999999999999999
Q ss_pred HHHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 85 HKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 85 ~k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+++|+++|||||.+|.+|+++++++++++++|++..+.+.+
T Consensus 98 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 98 WRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp HHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred HHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 99999999999999999999999999999999998776544
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-17 Score=182.49 Aligned_cols=210 Identities=13% Similarity=0.115 Sum_probs=150.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcC-------CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLG-------AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVR 785 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~G-------a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~ 785 (958)
.+++++++||||+|+||.+++++|+++| ++|++++|+.+...+ ....++.++.+|+++.+++.++++
T Consensus 11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~ 84 (342)
T 2hrz_A 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------GFSGAVDARAADLSAPGEAEKLVE 84 (342)
T ss_dssp CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------TCCSEEEEEECCTTSTTHHHHHHH
T ss_pred CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------ccCCceeEEEcCCCCHHHHHHHHh
Confidence 4688999999999999999999999999 899999998643221 123467888999999998877764
Q ss_pred HHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC-C---
Q psy4557 786 EVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-A--- 861 (958)
Q Consensus 786 ~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-~--- 861 (958)
+++|+||||||.... .+.++++..+++|+.|+..+++++.+...+....++||++||.+..-+. +
T Consensus 85 ------~~~d~vih~A~~~~~-----~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~ 153 (342)
T 2hrz_A 85 ------ARPDVIFHLAAIVSG-----EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPI 153 (342)
T ss_dssp ------TCCSEEEECCCCCHH-----HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSB
T ss_pred ------cCCCEEEECCccCcc-----cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCc
Confidence 479999999997531 2356789999999999999999887644211124799999998765432 2
Q ss_pred -------CChhhhHHHHHHHHHHHHHHHHhC--CCCcEEEEEE--CCcccCCCCCCCCChhhhhhh--c----ccc----
Q psy4557 862 -------GLAVYTGTKYFIEGISGALRQEVS--DRNIKVTCIQ--AGDVKTELLSHSTDRDVVDKY--D----ISK---- 920 (958)
Q Consensus 862 -------~~~~Y~asKaa~~~l~~~la~el~--~~gIrv~~v~--PG~v~T~~~~~~~~~~~~~~~--~----~~~---- 920 (958)
....|+.||++.+.+++.++.+.+ ...+|++.|. ||.+.++.... ........ . ...
T Consensus 154 ~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 231 (342)
T 2hrz_A 154 PDEFHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGF--FSNILREPLVGQEAVLPVPESI 231 (342)
T ss_dssp CTTCCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGH--HHHHHHHHHTTCCEEECSCTTC
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHH--HHHHHHHHhcCCCeeccCCCcc
Confidence 467899999999999998887632 2246777776 87765432110 00000000 0 000
Q ss_pred CCCCCCHHHHHHHHHHHhcCC
Q psy4557 921 AVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 921 ~~~~~~p~~ia~~i~~~l~~~ 941 (958)
...+..++|+|++++.++..+
T Consensus 232 ~~~~~~v~Dva~~~~~~~~~~ 252 (342)
T 2hrz_A 232 RHWHASPRSAVGFLIHGAMID 252 (342)
T ss_dssp EEEEECHHHHHHHHHHHHHSC
T ss_pred ceeeEehHHHHHHHHHHHhcc
Confidence 011357899999999988665
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=165.99 Aligned_cols=204 Identities=11% Similarity=0.096 Sum_probs=142.9
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||++++++|+++.+.+|+++.|.... ++.+.. ....++.++.+|++ +
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~-----~~~~~~----------~~~~~~~~~~~D~~-------d 63 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKT-----RIPPEI----------IDHERVTVIEGSFQ-------N 63 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHH-----HSCHHH----------HTSTTEEEEECCTT-------C
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccc-----cchhhc----------cCCCceEEEECCCC-------C
Confidence 4699999999999999999994446799999985320 111110 01357889999987 3
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDD 479 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~ 479 (958)
.+....+.+++|+|||+|+.. |+. ++++++.+.+.+.++|+|+||.++|+.......+... .
T Consensus 64 ~~~~~~~~~~~d~vv~~ag~~------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~~~~~~-----~ 125 (221)
T 3r6d_A 64 PGXLEQAVTNAEVVFVGAMES------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTF-----D 125 (221)
T ss_dssp HHHHHHHHTTCSEEEESCCCC------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHHHHHHH-----H
T ss_pred HHHHHHHHcCCCEEEEcCCCC------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcccccccc-----c
Confidence 467788888999999999853 555 9999999988888899999999998743211111000 0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHH
Q psy4557 480 FMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFL 559 (958)
Q Consensus 480 ~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~v 559 (958)
...+.|+.+|+.+|.+++. .|++++++|||.++++...+.+... . ........+++.+++
T Consensus 126 --~~~~~y~~~K~~~e~~~~~---~~i~~~~vrpg~v~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~dv 185 (221)
T 3r6d_A 126 --NLPISYVQGERQARNVLRE---SNLNYTILRLTWLYNDPEXTDYELI--------------P-EGAQFNDAQVSREAV 185 (221)
T ss_dssp --TSCHHHHHHHHHHHHHHHH---SCSEEEEEEECEEECCTTCCCCEEE--------------C-TTSCCCCCEEEHHHH
T ss_pred --ccccHHHHHHHHHHHHHHh---CCCCEEEEechhhcCCCCCcceeec--------------c-CCccCCCceeeHHHH
Confidence 1112799999999998853 6999999999999987332221110 0 001112237889999
Q ss_pred HHHHHHHh--cCcC-CCCceEEecCCC
Q psy4557 560 TKSLVQLT--TNVN-NANKIYNFINTN 583 (958)
Q Consensus 560 a~aiv~l~--~~~~-~~~~v~h~~n~~ 583 (958)
|++++.++ ..+. ..++.+.+.+|.
T Consensus 186 A~~~~~l~~~~~~~~~~~~~~~i~~~~ 212 (221)
T 3r6d_A 186 VKAIFDILHAADETPFHRTSIGVGEPG 212 (221)
T ss_dssp HHHHHHHHTCSCCGGGTTEEEEEECTT
T ss_pred HHHHHHHHHhcChhhhhcceeeecCCC
Confidence 99999998 6543 356778887664
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=190.77 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=106.1
Q ss_pred cccHHHHHHHHHHhCCCCeEEEe---CCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHC
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVD---HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~---~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G 88 (958)
..++.++|+++++++||++|+++ .+++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 35789999999999999999984 245689999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 89 ~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+++|||||.++.+|+.+++++++++++|+++++.+.+
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 9999999999999999999999999999998765543
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=177.30 Aligned_cols=213 Identities=15% Similarity=0.124 Sum_probs=143.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhH-----HHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRL-----ENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l-----~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
+|+++||||+|+||++++++|+++|++|++++|+.+.. +++.+.....+.++.++.+|+++.+++.++++.+
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV--- 77 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH---
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc---
Confidence 47899999999999999999999999999999986542 2221111111346778899999999998888765
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-----------
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP----------- 859 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~----------- 859 (958)
++|++|||||..... .+.++++..+++|+.|+..+++++.+.+.+ +.++||++||.+..-.
T Consensus 78 --~~d~vih~A~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~iv~~SS~~v~g~~~~~~~~E~~~ 149 (372)
T 1db3_A 78 --QPDEVYNLGAMSHVA----VSFESPEYTADVDAMGTLRLLEAIRFLGLE--KKTRFYQASTSELYGLVQEIPQKETTP 149 (372)
T ss_dssp --CCSEEEECCCCCTTT----TTTSCHHHHHHHHTHHHHHHHHHHHHTTCT--TTCEEEEEEEGGGGTTCCSSSBCTTSC
T ss_pred --CCCEEEECCcccCcc----ccccCHHHHHHHHHHHHHHHHHHHHHhCCC--CCcEEEEeCChhhhCCCCCCCCCccCC
Confidence 689999999975432 234557889999999999999998775531 2479999999865422
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC----hhhhhhh--c-----c----ccCCCC
Q psy4557 860 FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD----RDVVDKY--D-----I----SKAVPV 924 (958)
Q Consensus 860 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~----~~~~~~~--~-----~----~~~~~~ 924 (958)
......|+.||++.+.+++.++.++ |+.+..+.|+.+..+....... ....... . . .....+
T Consensus 150 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~ 226 (372)
T 1db3_A 150 FYPRSPYAVAKLYAYWITVNYRESY---GMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDW 226 (372)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeee
Confidence 1236689999999999999999886 4655556555443332111000 0000000 0 0 011235
Q ss_pred CCHHHHHHHHHHHhcCCC
Q psy4557 925 LTTKEISQSIIFALLQPS 942 (958)
Q Consensus 925 ~~p~~ia~~i~~~l~~~~ 942 (958)
+..+|+|++++.++..+.
T Consensus 227 i~v~Dva~a~~~~~~~~~ 244 (372)
T 1db3_A 227 GHAKDYVKMQWMMLQQEQ 244 (372)
T ss_dssp EEHHHHHHHHHHTTSSSS
T ss_pred eEHHHHHHHHHHHHhcCC
Confidence 678999999999876554
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-17 Score=186.57 Aligned_cols=209 Identities=14% Similarity=0.067 Sum_probs=143.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHH--cCCeEEEEecChhhHHHH-------HHHhhcCCCcEEEEEecCCCHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVT--LGAKVVAVARRIDRLENL-------KTSLQNAPGSIIVKKLDVTIENDVKK 782 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~--~Ga~Vi~~~r~~~~l~~~-------~~~l~~~~~~~~~~~~Dvs~~~~v~~ 782 (958)
..+++|+++||||+|+||++++++|++ +|++|++++|+....... .......+..+.++.+|+++.+++.+
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 85 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRR 85 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHH
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHH
Confidence 467899999999999999999999999 999999999975421110 00011123356788999999988876
Q ss_pred HHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC--
Q psy4557 783 VVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-- 860 (958)
Q Consensus 783 ~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-- 860 (958)
+ ...++|+||||||.... +.+.++..+++|+.|+..+++++.. . +++||++||.+..-..
T Consensus 86 ~------~~~~~D~vih~A~~~~~------~~~~~~~~~~~Nv~gt~~ll~aa~~----~--~~~~V~~SS~~vyg~~~~ 147 (362)
T 3sxp_A 86 L------EKLHFDYLFHQAAVSDT------TMLNQELVMKTNYQAFLNLLEIARS----K--KAKVIYASSAGVYGNTKA 147 (362)
T ss_dssp H------TTSCCSEEEECCCCCGG------GCCCHHHHHHHHTHHHHHHHHHHHH----T--TCEEEEEEEGGGGCSCCS
T ss_pred h------hccCCCEEEECCccCCc------cccCHHHHHHHHHHHHHHHHHHHHH----c--CCcEEEeCcHHHhCCCCC
Confidence 6 34689999999996432 3356789999999999999988732 2 2469999995543211
Q ss_pred --------CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC---C--hhhhhhhc------c---
Q psy4557 861 --------AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST---D--RDVVDKYD------I--- 918 (958)
Q Consensus 861 --------~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~---~--~~~~~~~~------~--- 918 (958)
.....|+.||++.+.+++.++.+ +++..|.|+.+..+...... . ........ .
T Consensus 148 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (362)
T 3sxp_A 148 PNVVGKNESPENVYGFSKLCMDEFVLSHSND-----NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEF 222 (362)
T ss_dssp SBCTTSCCCCSSHHHHHHHHHHHHHHHTTTT-----SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGG
T ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHhcc-----CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECC
Confidence 12356999999999999987665 56666777666654321100 0 00011000 0
Q ss_pred -ccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 919 -SKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 919 -~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
.....++.++|+|+++++++..+..
T Consensus 223 g~~~~~~i~v~Dva~ai~~~~~~~~~ 248 (362)
T 3sxp_A 223 GEQLRDFVYIEDVIQANVKAMKAQKS 248 (362)
T ss_dssp GCCEEECEEHHHHHHHHHHHTTCSSC
T ss_pred CCeEEccEEHHHHHHHHHHHHhcCCC
Confidence 0111356799999999998876643
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=187.96 Aligned_cols=113 Identities=20% Similarity=0.282 Sum_probs=103.3
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCC-CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~-~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
.++.++|+++++++||++|+++.. ++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 468999999999999999998631 5789999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEE--cccchhhh
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVIT--KGEYMDRL 125 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~--~~~~~~~~ 125 (958)
|||||.++.+|+.+++++++++++|+ +..+.+.+
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 99999999999999999999999999 66554433
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=190.81 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=104.8
Q ss_pred ccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 11 AEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 11 ~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
...++.++|+++++++||++|+++ +++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~-~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav 106 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIIC-GERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHhCCCceEEEc-CCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 346789999999999999999987 5689999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+||+|+.++.+|+.+++++++++++|++...
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~ 137 (544)
T 3o83_A 107 VLNALYSHRQYELNAFIKQIQPKLLIGSRQH 137 (544)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEEETTS
T ss_pred EecCCCCCCHHHHHHHHHhcCeeEEEEcccc
Confidence 9999999999999999999999999998764
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-16 Score=163.28 Aligned_cols=189 Identities=12% Similarity=0.174 Sum_probs=127.2
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
.++||||+|+||++++++|+++|++|++++|+.++++++. ..+.++.+|++|.++ +.++.+|+|
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-------~~~~~~~~D~~d~~~---------~~~~~~d~v 65 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-------KDINILQKDIFDLTL---------SDLSDQNVV 65 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-------SSSEEEECCGGGCCH---------HHHTTCSEE
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-------CCCeEEeccccChhh---------hhhcCCCEE
Confidence 5899999999999999999999999999999987766542 346788999998876 234679999
Q ss_pred EEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC------------Chh
Q psy4557 798 VNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG------------LAV 865 (958)
Q Consensus 798 InnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~------------~~~ 865 (958)
|||||..... ..+|+.+ ++.+++.+. ..+.+++|++||.++..+.++ ...
T Consensus 66 i~~ag~~~~~-------------~~~~~~~----~~~l~~a~~-~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~ 127 (221)
T 3ew7_A 66 VDAYGISPDE-------------AEKHVTS----LDHLISVLN-GTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPY 127 (221)
T ss_dssp EECCCSSTTT-------------TTSHHHH----HHHHHHHHC-SCCSSEEEEECCCC-------------------CCC
T ss_pred EECCcCCccc-------------cchHHHH----HHHHHHHHH-hcCCceEEEEecceEEEcCCCCccccccCCCCCHHH
Confidence 9999984321 2234444 555666665 334689999999987654332 355
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|+.+|++.+.+. .+.. ...|+++++|.||++.++............... .......+.++|+|++++.++.++..
T Consensus 128 y~~~k~~~e~~~-~~~~--~~~gi~~~ivrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~ 203 (221)
T 3ew7_A 128 YPTARAQAKQLE-HLKS--HQAEFSWTYISPSAMFEPGERTGDYQIGKDHLLFGSDGNSFISMEDYAIAVLDEIERPNH 203 (221)
T ss_dssp SCCHHHHHHHHH-HHHT--TTTTSCEEEEECSSCCCCC---------------------CCCHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHH-HHHh--hccCccEEEEeCcceecCCCccCceEeccccceecCCCCceEeHHHHHHHHHHHHhCccc
Confidence 999999998873 2322 167999999999999987211100000000000 01122468899999999999988764
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=176.89 Aligned_cols=201 Identities=12% Similarity=0.054 Sum_probs=140.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+ .+... .++.++.+|+++.+++.++++. +
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~l~~~-~~~~~~~~Dl~d~~~~~~~~~~-----~ 88 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRRE---HLKDH-PNLTFVEGSIADHALVNQLIGD-----L 88 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG---GSCCC-TTEEEEECCTTCHHHHHHHHHH-----H
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchh---hHhhc-CCceEEEEeCCCHHHHHHHHhc-----c
Confidence 4578899999999999999999999999999999998543211 11111 3577889999999998887764 3
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC----C---------
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR----P--------- 859 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~----~--------- 859 (958)
++|+||||||..... +.++++ +++|+.|+..+++++.+ .+.++||++||.+..- .
T Consensus 89 ~~D~vih~A~~~~~~-----~~~~~~--~~~N~~~~~~l~~a~~~-----~~~~~iV~~SS~~~~g~~~~~~~~~~~E~~ 156 (333)
T 2q1w_A 89 QPDAVVHTAASYKDP-----DDWYND--TLTNCVGGSNVVQAAKK-----NNVGRFVYFQTALCYGVKPIQQPVRLDHPR 156 (333)
T ss_dssp CCSEEEECCCCCSCT-----TCHHHH--HHHHTHHHHHHHHHHHH-----TTCSEEEEEEEGGGGCSCCCSSSBCTTSCC
T ss_pred CCcEEEECceecCCC-----ccCChH--HHHHHHHHHHHHHHHHH-----hCCCEEEEECcHHHhCCCcccCCCCcCCCC
Confidence 799999999986432 234455 99999999999998865 2347999999977643 2
Q ss_pred CCCChhhhHHHHHHHHHHHH-HHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-------ccccCCCCCCHHHHH
Q psy4557 860 FAGLAVYTGTKYFIEGISGA-LRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-------DISKAVPVLTTKEIS 931 (958)
Q Consensus 860 ~~~~~~Y~asKaa~~~l~~~-la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-------~~~~~~~~~~p~~ia 931 (958)
.|....|+.+|++.+.+++. ++ ++..|.||.+..+.............. .......++.++|+|
T Consensus 157 ~p~~~~Y~~sK~~~E~~~~~s~~--------~~~ilR~~~v~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 228 (333)
T 2q1w_A 157 NPANSSYAISKSANEDYLEYSGL--------DFVTFRLANVVGPRNVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLA 228 (333)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHTC--------CEEEEEESEEESTTCCSSHHHHHHHHHHTTCCCEEEECEECEEEHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhhC--------CeEEEeeceEECcCCcCcHHHHHHHHHHcCCeeeCCCceEeeEEHHHHH
Confidence 23327899999999999887 64 556677776655431100000011100 001123457899999
Q ss_pred HHHHHHhcCCC
Q psy4557 932 QSIIFALLQPS 942 (958)
Q Consensus 932 ~~i~~~l~~~~ 942 (958)
+++++++..+.
T Consensus 229 ~ai~~~~~~~~ 239 (333)
T 2q1w_A 229 RATVRAVDGVG 239 (333)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhcCC
Confidence 99999887664
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=173.99 Aligned_cols=231 Identities=14% Similarity=0.057 Sum_probs=150.0
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||+||||++++++|++++ .+|+++.|..... +.+ ... ...++.++.+|++.
T Consensus 5 ~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~---~~~---~~~---------~~~~~~~~~~Dv~~------ 62 (281)
T 3m1a_A 5 AKVWLVTGASSGFGRAIAEAAVAAG-DTVIGTARRTEAL---DDL---VAA---------YPDRAEAISLDVTD------ 62 (281)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSGGGG---HHH---HHH---------CTTTEEEEECCTTC------
T ss_pred CcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH---HHH---HHh---------ccCCceEEEeeCCC------
Confidence 4689999999999999999999764 6898888864321 111 111 23578899999874
Q ss_pred cHHHHHHHhc-------ccCEEEEcccccCc----cc---ChHHHHhhhHHH----HHHHHHhhccCCCccEEEEecccc
Q psy4557 399 NQDEYVSLSY-------EIDMIIHAAAFVNL----IL---PYNALYKSNVLA----TKNLIEFSFLNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~~-------~vd~IiH~AA~v~~----~~---~~~~~~~~NV~g----t~~ll~~a~~~~~k~~~~vST~~v 460 (958)
.+....+.. .+|+|||||+.... .. .+....++|+.| ++.++...++.+..+|+++||.+.
T Consensus 63 -~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~ 141 (281)
T 3m1a_A 63 -GERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGG 141 (281)
T ss_dssp -HHHHHHHHHHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred -HHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccc
Confidence 345555443 78999999997532 11 234567899999 555555555555679999999776
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCc-----ChhHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNW-----NLVDLN 531 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~-----n~~d~~ 531 (958)
+... .+...|+.||+..|.+++..+ .+|++++++|||.|.++...... ...++.
T Consensus 142 ~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~ 204 (281)
T 3m1a_A 142 QLSF-----------------AGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYA 204 (281)
T ss_dssp TCCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTH
T ss_pred cCCC-----------------CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhH
Confidence 4311 123579999999999987643 26999999999999876532211 111222
Q ss_pred HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHH
Q psy4557 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVL 594 (958)
Q Consensus 532 ~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l 594 (958)
.............| ...+..++++|++++.++.... .+..|++.++....+.+....+
T Consensus 205 ~~~~~~~~~~~~~~----~~~~~~~~dva~a~~~~~~~~~-~~~~~~l~s~~~~~i~g~~~~i 262 (281)
T 3m1a_A 205 EKVGPTRQLVQGSD----GSQPGDPAKAAAAIRLALDTEK-TPLRLALGGDAVDFLTGHLDSV 262 (281)
T ss_dssp HHHHHHHHHHHC---------CBCHHHHHHHHHHHHHSSS-CCSEEEESHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhcc----CCCCCCHHHHHHHHHHHHhCCC-CCeEEecCchHHHHHHHHHHHH
Confidence 22111111111111 2345679999999999887654 4678999875544444444433
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-16 Score=164.51 Aligned_cols=214 Identities=14% Similarity=0.077 Sum_probs=145.3
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+||||++++++|+++ +.+|+++.|... ++.+.... ..++.++.+|++.
T Consensus 6 ~~~~vlVTGasggiG~~~a~~l~~~-G~~V~~~~r~~~------~~~~~~~~----------~~~~~~~~~D~~~----- 63 (244)
T 1cyd_A 6 SGLRALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTNS------DLVSLAKE----------CPGIEPVCVDLGD----- 63 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHH------HHHHHHHH----------STTCEEEECCTTC-----
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHH------HHHHHHHh----------ccCCCcEEecCCC-----
Confidence 4578999999999999999999986 468999888532 12221111 1245667888874
Q ss_pred CcHHHHHHHhc---ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccC----C-CccEEEEecccccC
Q psy4557 398 KNQDEYVSLSY---EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLN----K-IKSFHYVSTDSIYP 462 (958)
Q Consensus 398 ~~~~~~~~l~~---~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~----~-~k~~~~vST~~v~~ 462 (958)
.+....+.+ .+|+|||+|+..... ..++...++|+.|+.++++.+... + .++|+++||...+.
T Consensus 64 --~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~ 141 (244)
T 1cyd_A 64 --WDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV 141 (244)
T ss_dssp --HHHHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS
T ss_pred --HHHHHHHHHHcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcC
Confidence 455666654 589999999965421 123456789999999998877542 3 47899999988765
Q ss_pred CCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-h---CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHH
Q psy4557 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-Q---MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI 538 (958)
Q Consensus 463 ~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~---~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~ 538 (958)
.. .....|+.||+..|.+++..+ + .|++++++|||.++++.....+....+...+
T Consensus 142 ~~-----------------~~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~---- 200 (244)
T 1cyd_A 142 TF-----------------PNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKL---- 200 (244)
T ss_dssp CC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHH----
T ss_pred CC-----------------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHH----
Confidence 21 112479999999999987643 2 5899999999999986432111111221111
Q ss_pred HHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 539 TRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 539 ~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.. + .| ..++++++++|++++.++.... ..+.++++...
T Consensus 201 ~~-~-~~----~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 240 (244)
T 1cyd_A 201 KE-R-HP----LRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG 240 (244)
T ss_dssp HH-H-ST----TSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTT
T ss_pred Hh-c-CC----ccCCCCHHHHHHHHHHHhCchhhcccCCEEEECCC
Confidence 11 1 12 2468999999999999886542 34677877653
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-16 Score=175.80 Aligned_cols=202 Identities=16% Similarity=0.114 Sum_probs=147.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHHc--CCeEEEEecChhh--HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTL--GAKVVAVARRIDR--LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~--Ga~Vi~~~r~~~~--l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
|+++||||+|+||.+++++|+++ |++|++++|+... .+.+ +.+. ...+.++.+|+++.+++.++++
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~-~~~~--~~~~~~~~~Dl~d~~~~~~~~~------- 74 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANL-EAIL--GDRVELVVGDIADAELVDKLAA------- 74 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGT-GGGC--SSSEEEEECCTTCHHHHHHHHT-------
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHH-hhhc--cCCeEEEECCCCCHHHHHHHhh-------
Confidence 68999999999999999999999 8999999996421 1111 1121 2468889999999988776654
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc--C------------
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV--R------------ 858 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~--~------------ 858 (958)
.+|+||||||.... +.+.++++..+++|+.|+..+++++.+. + ++||++||.+.. .
T Consensus 75 ~~d~vih~A~~~~~----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-----~-~~~v~~SS~~vyg~~~~~~~~~~~~~~ 144 (348)
T 1oc2_A 75 KADAIVHYAAESHN----DNSLNDPSPFIHTNFIGTYTLLEAARKY-----D-IRFHHVSTDEVYGDLPLREDLPGHGEG 144 (348)
T ss_dssp TCSEEEECCSCCCH----HHHHHCCHHHHHHHTHHHHHHHHHHHHH-----T-CEEEEEEEGGGGCCBCCGGGSTTTTCS
T ss_pred cCCEEEECCcccCc----cchhhCHHHHHHHHHHHHHHHHHHHHHh-----C-CeEEEecccceeCCCcccccccccccc
Confidence 35999999997532 1234567889999999999999988763 2 499999997632 1
Q ss_pred ---------CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc------c----
Q psy4557 859 ---------PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD------I---- 918 (958)
Q Consensus 859 ---------~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~------~---- 918 (958)
+.+....|+.||++.+.+++.++.++ |++++++.||.+.++....... ........ .
T Consensus 145 ~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (348)
T 1oc2_A 145 PGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF---GVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEG 221 (348)
T ss_dssp TTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTS
T ss_pred cCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh---CCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEecCC
Confidence 22345789999999999999999886 7999999999999987532110 01111100 0
Q ss_pred ccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 919 SKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 919 ~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
.....++.++|+|+++++++..+
T Consensus 222 ~~~~~~i~v~Dva~~~~~~~~~~ 244 (348)
T 1oc2_A 222 KNVRDWIHTNDHSTGVWAILTKG 244 (348)
T ss_dssp CCEEECEEHHHHHHHHHHHHHHC
T ss_pred CceEeeEEHHHHHHHHHHHhhCC
Confidence 00123567999999999988654
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-16 Score=177.69 Aligned_cols=203 Identities=13% Similarity=0.044 Sum_probs=149.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
++|+++||||+|+||++++++|+++|++|++++|+.+..... . ...+.++.+|+++.+++.++++ ++
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~--~~~v~~~~~Dl~d~~~~~~~~~-------~~ 94 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE----D--MFCDEFHLVDLRVMENCLKVTE-------GV 94 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG----G--GTCSEEEECCTTSHHHHHHHHT-------TC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh----c--cCCceEEECCCCCHHHHHHHhC-------CC
Confidence 467999999999999999999999999999999986543211 1 1246678899999988877663 68
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC----------------
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR---------------- 858 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~---------------- 858 (958)
|+||||||....... +.++++.++++|+.|+..+++++.. .+.++||++||.+..-
T Consensus 95 d~Vih~A~~~~~~~~---~~~~~~~~~~~Nv~g~~~ll~a~~~-----~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~ 166 (379)
T 2c5a_A 95 DHVFNLAADMGGMGF---IQSNHSVIMYNNTMISFNMIEAARI-----NGIKRFFYASSACIYPEFKQLETTNVSLKESD 166 (379)
T ss_dssp SEEEECCCCCCCHHH---HTTCHHHHHHHHHHHHHHHHHHHHH-----TTCSEEEEEEEGGGSCGGGSSSSSSCEECGGG
T ss_pred CEEEECceecCcccc---cccCHHHHHHHHHHHHHHHHHHHHH-----cCCCEEEEEeehheeCCCCCCCccCCCcCccc
Confidence 999999997543211 1245788999999999999988743 2346999999976532
Q ss_pred --CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-----hhhhhhh-------ccc----c
Q psy4557 859 --PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-----RDVVDKY-------DIS----K 920 (958)
Q Consensus 859 --~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-----~~~~~~~-------~~~----~ 920 (958)
+......|+.+|++.+.+++.++.+. |+++++|.||.+.++....... ....... ... .
T Consensus 167 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~ 243 (379)
T 2c5a_A 167 AWPAEPQDAFGLEKLATEELCKHYNKDF---GIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQ 243 (379)
T ss_dssp GSSBCCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHH---CCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCe
Confidence 22345689999999999999998775 7999999999999886432110 0111110 000 1
Q ss_pred CCCCCCHHHHHHHHHHHhcCC
Q psy4557 921 AVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 921 ~~~~~~p~~ia~~i~~~l~~~ 941 (958)
...++.++|+|+++++++..+
T Consensus 244 ~~~~i~v~Dva~ai~~~l~~~ 264 (379)
T 2c5a_A 244 TRSFTFIDECVEGVLRLTKSD 264 (379)
T ss_dssp EECCEEHHHHHHHHHHHHHSS
T ss_pred eEEEEEHHHHHHHHHHHhhcc
Confidence 124567999999999988765
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=176.87 Aligned_cols=197 Identities=18% Similarity=0.175 Sum_probs=145.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||+|+||++++++|+++|++|++++|+.+...+.. ...+.++.+|+++.+ +.++++ . |+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------~~~~~~~~~Dl~d~~-~~~~~~-------~-d~ 65 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV------NPSAELHVRDLKDYS-WGAGIK-------G-DV 65 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS------CTTSEEECCCTTSTT-TTTTCC-------C-SE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc------CCCceEEECccccHH-HHhhcC-------C-CE
Confidence 47999999999999999999999999999999865433211 345678889999976 544332 3 99
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----------CCCCChh
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-----------PFAGLAV 865 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-----------~~~~~~~ 865 (958)
+|||||.... ..+.++++..+++|+.|+..+++++.. . +.++||++||.+..- +......
T Consensus 66 vih~A~~~~~----~~~~~~~~~~~~~n~~~~~~l~~a~~~----~-~~~~iv~~SS~~vyg~~~~~~~~e~~~~~p~~~ 136 (312)
T 3ko8_A 66 VFHFAANPEV----RLSTTEPIVHFNENVVATFNVLEWARQ----T-GVRTVVFASSSTVYGDADVIPTPEEEPYKPISV 136 (312)
T ss_dssp EEECCSSCSS----SGGGSCHHHHHHHHHHHHHHHHHHHHH----H-TCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSH
T ss_pred EEECCCCCCc----hhhhhCHHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEeCcHHHhCCCCCCCCCCCCCCCCCCh
Confidence 9999996432 234456789999999999999988743 1 346999999987542 2334678
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-------cc----cCCCCCCHHHHHHHH
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-------IS----KAVPVLTTKEISQSI 934 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-------~~----~~~~~~~p~~ia~~i 934 (958)
|+.||++.+.+++.++.++ |++++++.||.+.++............... .. ....++.++|+|+++
T Consensus 137 Y~~sK~~~e~~~~~~~~~~---g~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~ 213 (312)
T 3ko8_A 137 YGAAKAAGEVMCATYARLF---GVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEAT 213 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECTTCCSSHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh---CCCEEEEeeccccCcCCCCChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHH
Confidence 9999999999999999887 899999999999998643211111111100 00 012345689999999
Q ss_pred HHHhcC
Q psy4557 935 IFALLQ 940 (958)
Q Consensus 935 ~~~l~~ 940 (958)
++++..
T Consensus 214 ~~~~~~ 219 (312)
T 3ko8_A 214 LAAWKK 219 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998876
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=187.09 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=104.1
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
..++.++|+++++++||++|+++ +++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~-~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 102 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEe-CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence 35799999999999999999987 46789999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
||+||.++.+|+.+++++++++++|+++.+
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~ 132 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAYIIPDAY 132 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEESEE
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEEEecccc
Confidence 999999999999999999999999998764
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-16 Score=172.57 Aligned_cols=198 Identities=16% Similarity=0.168 Sum_probs=141.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||+|+||++++++|+++|..|++..|+....+. ....+.++.+|+++ +++.++++ ++|+
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~-------~~~~~~~~~~Dl~~-~~~~~~~~-------~~d~ 66 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEF-------VNEAARLVKADLAA-DDIKDYLK-------GAEE 66 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGG-------SCTTEEEECCCTTT-SCCHHHHT-------TCSE
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhh-------cCCCcEEEECcCCh-HHHHHHhc-------CCCE
Confidence 479999999999999999999999555554444332221 13457888999998 77766553 7999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----------CCCCChh
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-----------PFAGLAV 865 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-----------~~~~~~~ 865 (958)
+|||||... ...+.++++.++++|+.|+..+++++.. . +.++||++||.+..- +......
T Consensus 67 vih~a~~~~----~~~~~~~~~~~~~~nv~~~~~l~~~~~~----~-~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~ 137 (313)
T 3ehe_A 67 VWHIAANPD----VRIGAENPDEIYRNNVLATYRLLEAMRK----A-GVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISL 137 (313)
T ss_dssp EEECCCCCC----CC-CCCCHHHHHHHHHHHHHHHHHHHHH----H-TCCEEEEECCGGGGCSCSSSSBCTTSCCCCCSH
T ss_pred EEECCCCCC----hhhhhhCHHHHHHHHHHHHHHHHHHHHH----c-CCCeEEEeCchHHhCcCCCCCCCCCCCCCCCCH
Confidence 999999642 2334566889999999999999887533 2 347999999987542 3345678
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh----c---cc----cCCCCCCHHHHHHHH
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY----D---IS----KAVPVLTTKEISQSI 934 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~----~---~~----~~~~~~~p~~ia~~i 934 (958)
|+.||++.+.+++.++.++ |++++++.||.+..+......-....... . .. ....++.++|+|+++
T Consensus 138 Y~~sK~~~e~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~ 214 (313)
T 3ehe_A 138 YGASKLACEALIESYCHTF---DMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAM 214 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TCEEEEEECSCEESTTCCCSHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc---CCCEEEEeeccccCcCCCcChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHH
Confidence 9999999999999999886 89999999999988753321000111100 0 00 112357789999999
Q ss_pred HHHhcCC
Q psy4557 935 IFALLQP 941 (958)
Q Consensus 935 ~~~l~~~ 941 (958)
++++..+
T Consensus 215 ~~~~~~~ 221 (313)
T 3ehe_A 215 LFGLRGD 221 (313)
T ss_dssp HHHTTCC
T ss_pred HHHhccC
Confidence 9987733
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=188.78 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHhCCCCeEEEeC----CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCC
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDH----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGG 89 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~----~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~ 89 (958)
...++|+++|+++||++|+++. .++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+|+|+
T Consensus 57 ~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Ga 136 (580)
T 3etc_A 57 FAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGA 136 (580)
T ss_dssp HHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCE
Confidence 3459999999999999999852 235899999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHhhcCCeEEEEcccch
Q psy4557 90 GYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 90 v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
++||+||.++.+++.+++++++++++|++.+..
T Consensus 137 v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~ 169 (580)
T 3etc_A 137 IAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD 169 (580)
T ss_dssp EEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT
T ss_pred EEEeCCccCCHHHHHHHHHhcCCCEEEEecchh
Confidence 999999999999999999999999999987643
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=173.32 Aligned_cols=201 Identities=15% Similarity=0.185 Sum_probs=145.2
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
+++||||+|+||++++++|+++|++|++++|...... +.+ ...+.++.+|+++.+++.++++. .++|++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~---~~~~~~~~~Dl~~~~~~~~~~~~-----~~~d~v 70 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKR---ENV---PKGVPFFRVDLRDKEGVERAFRE-----FRPTHV 70 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCG---GGS---CTTCCEECCCTTCHHHHHHHHHH-----HCCSEE
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCch---hhc---ccCeEEEECCCCCHHHHHHHHHh-----cCCCEE
Confidence 5899999999999999999999999999988532111 011 12455778999999998887764 268999
Q ss_pred EEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-------C------CCCCh
Q psy4557 798 VNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-------P------FAGLA 864 (958)
Q Consensus 798 InnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-------~------~~~~~ 864 (958)
|||||..... .+.++++..+++|+.|++.+++++.. . +.++||++||.++.. + .....
T Consensus 71 i~~a~~~~~~----~~~~~~~~~~~~N~~g~~~l~~a~~~----~-~~~~iv~~SS~~~~~g~~~~~~~~~E~~~~~~~~ 141 (311)
T 2p5y_A 71 SHQAAQASVK----VSVEDPVLDFEVNLLGGLNLLEACRQ----Y-GVEKLVFASTGGAIYGEVPEGERAEETWPPRPKS 141 (311)
T ss_dssp EECCSCCCHH----HHHHCHHHHHHHHTHHHHHHHHHHHH----T-TCSEEEEEEEHHHHHCCCCTTCCBCTTSCCCCCS
T ss_pred EECccccCch----hhhhCHHHHHHHHHHHHHHHHHHHHH----h-CCCEEEEeCCChhhcCCCCCCCCcCCCCCCCCCC
Confidence 9999975321 23466889999999999999988743 2 347999999982211 1 12356
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh----hhhhh--c----cc-----c----CCCCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD----VVDKY--D----IS-----K----AVPVL 925 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~----~~~~~--~----~~-----~----~~~~~ 925 (958)
.|+.||++.+.+++.++.++ |++++++.||.+.++......... ..... . .. . ...++
T Consensus 142 ~Y~~sK~~~e~~~~~~~~~~---~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 218 (311)
T 2p5y_A 142 PYAASKAAFEHYLSVYGQSY---GLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYV 218 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEE
T ss_pred hHHHHHHHHHHHHHHHHHHc---CCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeE
Confidence 89999999999999998875 799999999999998643211100 11100 0 00 0 11345
Q ss_pred CHHHHHHHHHHHhcCC
Q psy4557 926 TTKEISQSIIFALLQP 941 (958)
Q Consensus 926 ~p~~ia~~i~~~l~~~ 941 (958)
.++|+|+++++++..+
T Consensus 219 ~v~Dva~a~~~~~~~~ 234 (311)
T 2p5y_A 219 YVGDVAEAHALALFSL 234 (311)
T ss_dssp EHHHHHHHHHHHHHHC
T ss_pred EHHHHHHHHHHHHhCC
Confidence 7899999999988654
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=174.61 Aligned_cols=209 Identities=14% Similarity=0.120 Sum_probs=153.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC-----CcEEEEEecCCCHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP-----GSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~-----~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
.+++|+++||||+|+||++++++|+++|++|++++|+........+.+.... ..+.++.+|+++.+++.++++
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-- 99 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK-- 99 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT--
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc--
Confidence 4678999999999999999999999999999999997654333333332221 468889999999988776664
Q ss_pred HHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC------
Q psy4557 788 LAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA------ 861 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~------ 861 (958)
++|++|||||..... .+.+++...+++|+.|+..+++++.. . +.+++|++||.+..-..+
T Consensus 100 -----~~d~Vih~A~~~~~~----~~~~~~~~~~~~nv~~~~~ll~a~~~----~-~~~~~v~~SS~~vyg~~~~~~~~E 165 (351)
T 3ruf_A 100 -----GVDHVLHQAALGSVP----RSIVDPITTNATNITGFLNILHAAKN----A-QVQSFTYAASSSTYGDHPALPKVE 165 (351)
T ss_dssp -----TCSEEEECCCCCCHH----HHHHCHHHHHHHHTHHHHHHHHHHHH----T-TCSEEEEEEEGGGGTTCCCSSBCT
T ss_pred -----CCCEEEECCccCCcc----hhhhCHHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEEecHHhcCCCCCCCCcc
Confidence 699999999975321 23456778999999999998887743 2 346999999987653322
Q ss_pred -----CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-----hhhhhhh------ccc----cC
Q psy4557 862 -----GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-----RDVVDKY------DIS----KA 921 (958)
Q Consensus 862 -----~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-----~~~~~~~------~~~----~~ 921 (958)
....|+.+|.+.+.+++.++.+. |++++.+.||.+..+....... ....... ... ..
T Consensus 166 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 242 (351)
T 3ruf_A 166 ENIGNPLSPYAVTKYVNEIYAQVYARTY---GFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETS 242 (351)
T ss_dssp TCCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCE
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeE
Confidence 24679999999999999998876 7999999999998775332100 0111110 000 11
Q ss_pred CCCCCHHHHHHHHHHHhcC
Q psy4557 922 VPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 922 ~~~~~p~~ia~~i~~~l~~ 940 (958)
..++..+|+|++++.++..
T Consensus 243 ~~~i~v~Dva~a~~~~~~~ 261 (351)
T 3ruf_A 243 RDFCYIDNVIQMNILSALA 261 (351)
T ss_dssp ECCEEHHHHHHHHHHHHTC
T ss_pred EeeEEHHHHHHHHHHHHhh
Confidence 2356789999999998776
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=188.55 Aligned_cols=114 Identities=24% Similarity=0.357 Sum_probs=103.5
Q ss_pred CCccccHHHHHHHHHHhCCCCeEEEeCCC---------ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHH
Q psy4557 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDG---------RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTI 79 (958)
Q Consensus 9 ~~~~~~l~~~~~~~a~~~pd~~Al~~~~~---------~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~ 79 (958)
+....++.++|+++++++||++|+++.++ +++||+||+++++++|++|++.|+ +||+|+|+++|++++++
T Consensus 16 ~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~ 94 (562)
T 3ite_A 16 YTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFA 94 (562)
T ss_dssp --CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHH
T ss_pred ecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHH
Confidence 34456789999999999999999986332 689999999999999999999999 79999999999999999
Q ss_pred HHHHHHHHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 80 SYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 80 ~~la~~k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
++|||+|+|+++|||||+++.+|+.+++++++++++|++++..+
T Consensus 95 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~ 138 (562)
T 3ite_A 95 IIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFD 138 (562)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred HHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccc
Confidence 99999999999999999999999999999999999999876443
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-16 Score=172.50 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=131.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh------HHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR------LENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~------l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
+|+++||||+|+||.+++++|+++|++|++++|+... ..+..+.+.. .+.++.++.+|+++.+++.++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-- 79 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK-- 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH--
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHh--
Confidence 5889999999999999999999999999999885432 1112222221 123577889999999988877764
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC---------
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--------- 859 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~--------- 859 (958)
+ ++|+||||||...... +.++++..+++|+.|+..+++++.. . +.++||++||.+..-.
T Consensus 80 --~-~~d~vih~A~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~~~iv~~SS~~~~g~~~~~~~~E~ 147 (348)
T 1ek6_A 80 --Y-SFMAVIHFAGLKAVGE----SVQKPLDYYRVNLTGTIQLLEIMKA----H-GVKNLVFSSSATVYGNPQYLPLDEA 147 (348)
T ss_dssp --C-CEEEEEECCSCCCHHH----HHHCHHHHHHHHHHHHHHHHHHHHH----T-TCCEEEEEEEGGGGCSCSSSSBCTT
T ss_pred --c-CCCEEEECCCCcCccc----hhhchHHHHHHHHHHHHHHHHHHHH----h-CCCEEEEECcHHHhCCCCCCCcCCC
Confidence 2 7999999999754221 3456789999999999998886532 2 3479999999875421
Q ss_pred ---CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCC
Q psy4557 860 ---FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTE 902 (958)
Q Consensus 860 ---~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~ 902 (958)
.|....|+.||++.+.+++.++.+ ..++++..+.||.+..+
T Consensus 148 ~~~~p~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~lR~~~v~G~ 191 (348)
T 1ek6_A 148 HPTGGCTNPYGKSKFFIEEMIRDLCQA--DKTWNAVLLRYFNPTGA 191 (348)
T ss_dssp SCCCCCSSHHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECEEECC
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhc--CCCcceEEEeeccccCC
Confidence 133678999999999999999988 35699999999988765
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-16 Score=171.57 Aligned_cols=233 Identities=13% Similarity=0.070 Sum_probs=151.5
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++++|||||||||||.+++++|++++ .+|+++.|.... .+.+.+.+... ...++.++.+|++.
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G-~~V~~~~r~~~~---~~~~~~~l~~~--------~~~~~~~~~~Dl~~---- 87 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDV---LKATAEQISSQ--------TGNKVHAIQCDVRD---- 87 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH---HHHHHHHHHHH--------HSSCEEEEECCTTC----
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHH---HHHHHHHHHHh--------cCCceEEEEeCCCC----
Confidence 356789999999999999999999874 689988885321 12222211110 13578899999874
Q ss_pred CCcHHHHHHHhc-------ccCEEEEcccccCc----cc---ChHHHHhhhHHHHHHHHHhhc-----cCCCccEEEEec
Q psy4557 397 LKNQDEYVSLSY-------EIDMIIHAAAFVNL----IL---PYNALYKSNVLATKNLIEFSF-----LNKIKSFHYVST 457 (958)
Q Consensus 397 L~~~~~~~~l~~-------~vd~IiH~AA~v~~----~~---~~~~~~~~NV~gt~~ll~~a~-----~~~~k~~~~vST 457 (958)
.+....+.+ .+|+|||||+.... .. .++....+|+.|+.++++.+. ..+..+|+++||
T Consensus 88 ---~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS 164 (302)
T 1w6u_A 88 ---PDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT 164 (302)
T ss_dssp ---HHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ---HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 344544443 56999999996432 11 234567899999999987764 233468999999
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
...+... .+...|+.||...|.+++..+ ..|++++++|||.++++............
T Consensus 165 ~~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~-- 225 (302)
T 1w6u_A 165 IYAETGS-----------------GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTF-- 225 (302)
T ss_dssp THHHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHH--
T ss_pred cccccCC-----------------CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhh--
Confidence 8665311 123479999999999987643 26999999999999886322111111111
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCCCHHHHHHHH
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPIHIKTLVSVL 594 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~~~~~l~~~l 594 (958)
.... ....|. ..+..++++|++++.++.... ..+.+|++.....+++.++++.+
T Consensus 226 -~~~~--~~~~p~----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~ 281 (302)
T 1w6u_A 226 -EKEM--IGRIPC----GRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDL 281 (302)
T ss_dssp -HHHH--HTTCTT----SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGG
T ss_pred -HHHH--HhcCCc----CCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccc
Confidence 0111 112231 246789999999999886432 25789999887655555554433
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-16 Score=185.49 Aligned_cols=110 Identities=20% Similarity=0.299 Sum_probs=104.6
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.++|+++++++|+++|+.+ .++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|+++|
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v 82 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDC-LGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI 82 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHCCCCcceec-CCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 4689999999999999999986 568899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMD 123 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~ 123 (958)
|+|++++.+|+.+++++++++++|+++++..
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~ 113 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPL 113 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCS
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCcccc
Confidence 9999999999999999999999999887543
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.7e-16 Score=173.23 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=124.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..+++|+++||||+|+||.+++++|+++|++|++++|+.+. ..+.++.+|+++.+++.++++
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------------~~~~~~~~Dl~d~~~~~~~~~------ 76 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------------TGGEEVVGSLEDGQALSDAIM------ 76 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------------SCCSEEESCTTCHHHHHHHHT------
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------------CCccEEecCcCCHHHHHHHHh------
Confidence 45688999999999999999999999999999999998654 345678899999988876664
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-------------
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR------------- 858 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~------------- 858 (958)
++|++|||||.... +.+.++..+++|+.|+..+++++.. .+.++||++||....-
T Consensus 77 -~~d~vih~A~~~~~------~~~~~~~~~~~nv~~~~~ll~a~~~-----~~~~~~V~~SS~~vyg~~~~~~~~~~E~~ 144 (347)
T 4id9_A 77 -GVSAVLHLGAFMSW------APADRDRMFAVNVEGTRRLLDAASA-----AGVRRFVFASSGEVYPENRPEFLPVTEDH 144 (347)
T ss_dssp -TCSEEEECCCCCCS------SGGGHHHHHHHHTHHHHHHHHHHHH-----TTCSEEEEEEEGGGTTTTSCSSSSBCTTS
T ss_pred -CCCEEEECCcccCc------chhhHHHHHHHHHHHHHHHHHHHHH-----cCCCeEEEECCHHHhCCCCCCCCCcCCCC
Confidence 78999999997533 3345689999999999998887743 2347999999965432
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCccc
Q psy4557 859 PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVK 900 (958)
Q Consensus 859 ~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~ 900 (958)
+......|+.+|.+.+.+++.++.+. |++++++.||.+.
T Consensus 145 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~ 183 (347)
T 4id9_A 145 PLCPNSPYGLTKLLGEELVRFHQRSG---AMETVILRFSHTQ 183 (347)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHS---SSEEEEEEECEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHhc---CCceEEEccceEe
Confidence 22346789999999999999988874 8999999999998
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-16 Score=185.48 Aligned_cols=108 Identities=29% Similarity=0.442 Sum_probs=100.4
Q ss_pred HHHHHHHHhCCCCeEEEe--CCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEecC
Q psy4557 17 YMFRNQAKRTPDKIAVVD--HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLPL 94 (958)
Q Consensus 17 ~~~~~~a~~~pd~~Al~~--~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vPl 94 (958)
++|++.++++|+++|+.. .+++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++|||
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 467889999999998863 456789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 95 ETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 95 n~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
||.+|.+|+.+++++++++++|++....+.
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 113 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDG 113 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTT
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHH
Confidence 999999999999999999999999876543
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-16 Score=185.09 Aligned_cols=106 Identities=24% Similarity=0.322 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEec
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vP 93 (958)
++.++|+++++++||++|+++ .++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|+++||
T Consensus 2 ~l~~~l~~~a~~~p~~~A~~~-~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 2 KLLEQIEKWAAETPDQTAFVW-RDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CHHHHHHHHHHHSTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred cHHHHHHHHHHHCCCceEEEe-CCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 578999999999999999987 4678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEccc
Q psy4557 94 LETSYPPALLESVLDDAKPSIVITKGE 120 (958)
Q Consensus 94 ln~~~~~~~l~~il~~~~~~~vi~~~~ 120 (958)
+|++++.+|+.+++++++++++|++..
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~ 107 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATA 107 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSC
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCc
Confidence 999999999999999999999999754
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-17 Score=168.68 Aligned_cols=189 Identities=14% Similarity=0.044 Sum_probs=139.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+|+++||||+|+||++++++|+++|+ +|++++|+.++ ....+.++.+|+++.+++.+++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~----------~~~~~~~~~~D~~~~~~~~~~~-------- 65 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------EHPRLDNPVGPLAELLPQLDGS-------- 65 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------CCTTEECCBSCHHHHGGGCCSC--------
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc----------cCCCceEEeccccCHHHHHHhh--------
Confidence 468999999999999999999999998 99999998764 1235777889998877665443
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+|++|||||.... +.+.++..+++|+.++..+++++.+ . +.++||++||..+... ....|+.+|++
T Consensus 66 -~d~vi~~a~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~~~~v~~Ss~~~~~~--~~~~y~~sK~~ 131 (215)
T 2a35_A 66 -IDTAFCCLGTTIK------EAGSEEAFRAVDFDLPLAVGKRALE----M-GARHYLVVSALGADAK--SSIFYNRVKGE 131 (215)
T ss_dssp -CSEEEECCCCCHH------HHSSHHHHHHHHTHHHHHHHHHHHH----T-TCCEEEEECCTTCCTT--CSSHHHHHHHH
T ss_pred -hcEEEECeeeccc------cCCCHHHHHHhhHHHHHHHHHHHHH----c-CCCEEEEECCcccCCC--CccHHHHHHHH
Confidence 8999999997532 1345788999999999998887643 2 3469999999887643 35689999999
Q ss_pred HHHHHHHHHHHhCCCCcE-EEEEECCcccCCCCCCCCChhhhhhhc-c-ccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 873 IEGISGALRQEVSDRNIK-VTCIQAGDVKTELLSHSTDRDVVDKYD-I-SKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIr-v~~v~PG~v~T~~~~~~~~~~~~~~~~-~-~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
++.+.+. .|++ +++|.||++.++............... . .....+..++|+|++++.++.++.
T Consensus 132 ~e~~~~~-------~~~~~~~~vrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~ 197 (215)
T 2a35_A 132 LEQALQE-------QGWPQLTIARPSLLFGPREEFRLAEILAAPIARILPGKYHGIEACDLARALWRLALEEG 197 (215)
T ss_dssp HHHHHTT-------SCCSEEEEEECCSEESTTSCEEGGGGTTCCCC----CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHH-------cCCCeEEEEeCceeeCCCCcchHHHHHHHhhhhccCCCcCcEeHHHHHHHHHHHHhcCC
Confidence 9998764 3898 999999999987532100000000000 0 001124567999999999888765
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=188.40 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=105.9
Q ss_pred cccHHHHHHHHHHhCCCCeEEE---e-CCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVV---D-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~---~-~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~ 87 (958)
..++.++|.++++++|+++|++ + ..++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 98 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 98 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHc
Confidence 4589999999999999999975 4 23578999999999999999999999999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 88 G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|+++||+||.++.+|+.+++++++++++|++.+..+.+
T Consensus 99 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 99 GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred CCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 99999999999999999999999999999998766544
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=157.79 Aligned_cols=181 Identities=15% Similarity=0.161 Sum_probs=131.2
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++++++|+ + +.+|+++.|... .+.+|++. .
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~-g~~V~~~~r~~~-----------------------------~~~~D~~~-------~ 46 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-K-KAEVITAGRHSG-----------------------------DVTVDITN-------I 46 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-T-TSEEEEEESSSS-----------------------------SEECCTTC-------H
T ss_pred EEEEEcCCcHHHHHHHHHHH-C-CCeEEEEecCcc-----------------------------ceeeecCC-------H
Confidence 69999999999999999998 5 578998887532 24577763 3
Q ss_pred HHHHHHhc---ccCEEEEcccccCcc----cCh---HHHHhhhHHHHHHHHHhhccC---CCccEEEEecccccCCCCCC
Q psy4557 401 DEYVSLSY---EIDMIIHAAAFVNLI----LPY---NALYKSNVLATKNLIEFSFLN---KIKSFHYVSTDSIYPSTSEN 467 (958)
Q Consensus 401 ~~~~~l~~---~vd~IiH~AA~v~~~----~~~---~~~~~~NV~gt~~ll~~a~~~---~~k~~~~vST~~v~~~~~~~ 467 (958)
+..+.+.+ .+|+|||+|+..... .+. ....++|+.|+.++++.+... + .+|+++||...+...
T Consensus 47 ~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~--- 122 (202)
T 3d7l_A 47 DSIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMEDPI--- 122 (202)
T ss_dssp HHHHHHHHHHCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTSCC---
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcCCC---
Confidence 55555544 489999999965321 122 345579999999999988754 3 689999987654311
Q ss_pred CcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhh---CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc
Q psy4557 468 FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ---MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA 544 (958)
Q Consensus 468 ~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~---~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~ 544 (958)
.....|+.||...|.+++..+. .|++++++|||.++++.. .. ....
T Consensus 123 --------------~~~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~-----------~~------~~~~ 171 (202)
T 3d7l_A 123 --------------VQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD-----------KL------EPFF 171 (202)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH-----------HH------GGGS
T ss_pred --------------CccHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh-----------hh------hhhc
Confidence 1234799999999999987553 499999999999998631 00 0111
Q ss_pred CCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEe
Q psy4557 545 PDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNF 579 (958)
Q Consensus 545 P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~ 579 (958)
| ..++++++++|++++.+.. ....+++||+
T Consensus 172 ~----~~~~~~~~dva~~~~~~~~-~~~~G~~~~v 201 (202)
T 3d7l_A 172 E----GFLPVPAAKVARAFEKSVF-GAQTGESYQV 201 (202)
T ss_dssp T----TCCCBCHHHHHHHHHHHHH-SCCCSCEEEE
T ss_pred c----ccCCCCHHHHHHHHHHhhh-ccccCceEec
Confidence 2 3567999999999988773 3345678886
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.8e-16 Score=171.13 Aligned_cols=203 Identities=14% Similarity=0.156 Sum_probs=146.9
Q ss_pred EEEEEcCCchHHHHHHHHHHHc---C---CeEEEEecChh--hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTL---G---AKVVAVARRID--RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~---G---a~Vi~~~r~~~--~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+++||||+|+||++++++|+++ | ++|++++|+.. ..+.+. .+. ...++.++.+|+++.+++.+++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~-~~~-~~~~~~~~~~Dl~d~~~~~~~~----- 74 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLA-PVD-ADPRLRFVHGDIRDAGLLAREL----- 74 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGG-GGT-TCTTEEEEECCTTCHHHHHHHT-----
T ss_pred eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhh-hcc-cCCCeEEEEcCCCCHHHHHHHh-----
Confidence 5899999999999999999997 8 99999998642 111111 121 1346888999999998877665
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----------
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR----------- 858 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~----------- 858 (958)
+++|++|||||..... .+.++++..+++|+.|+..+++++.+. +.++||++||.+..-
T Consensus 75 --~~~d~Vih~A~~~~~~----~~~~~~~~~~~~Nv~~~~~l~~a~~~~-----~~~~~v~~SS~~vyg~~~~~~~~E~~ 143 (337)
T 1r6d_A 75 --RGVDAIVHFAAESHVD----RSIAGASVFTETNVQGTQTLLQCAVDA-----GVGRVVHVSTNQVYGSIDSGSWTESS 143 (337)
T ss_dssp --TTCCEEEECCSCCCHH----HHHHCCHHHHHHHTHHHHHHHHHHHHT-----TCCEEEEEEEGGGGCCCSSSCBCTTS
T ss_pred --cCCCEEEECCCccCch----hhhhCHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEecchHHhCCCCCCCCCCCC
Confidence 5799999999975321 233567889999999999999988663 236999999975431
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc----cc--c----CCCCCCH
Q psy4557 859 PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD----IS--K----AVPVLTT 927 (958)
Q Consensus 859 ~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~----~~--~----~~~~~~p 927 (958)
+......|+.||++.+.+++.++.++ |++++++.||.+.++....... ........ .. . ...++.+
T Consensus 144 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 220 (337)
T 1r6d_A 144 PLEPNSPYAASKAGSDLVARAYHRTY---GLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHT 220 (337)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEH
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHH---CCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEeCCCCeeEeeEeH
Confidence 23346789999999999999998875 7999999999999886432110 00111100 00 0 1134678
Q ss_pred HHHHHHHHHHhcCC
Q psy4557 928 KEISQSIIFALLQP 941 (958)
Q Consensus 928 ~~ia~~i~~~l~~~ 941 (958)
+|+|+++++++..+
T Consensus 221 ~Dva~a~~~~~~~~ 234 (337)
T 1r6d_A 221 DDHCRGIALVLAGG 234 (337)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999988654
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=168.78 Aligned_cols=211 Identities=15% Similarity=0.062 Sum_probs=148.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHH-HHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLE-NLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~-~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.++.++||||+|+||++++++|+++|++|++++|+.+... ...+.+. ....+.++.+|+++.+++.++++.+ +
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 86 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMADACSVQRAVIKA-----Q 86 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHH-----C
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhcc-ccCceEEEECCCCCHHHHHHHHHHc-----C
Confidence 5788999999999999999999999999999999865421 1111221 2245788899999999988887765 6
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC-----------CC
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-----------AG 862 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-----------~~ 862 (958)
+|++|||||...... +.++++..+++|+.|+..+++++.+. +..++||++||.+..-.. ..
T Consensus 87 ~d~Vih~A~~~~~~~----~~~~~~~~~~~n~~~~~~l~~a~~~~----~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~p 158 (335)
T 1rpn_A 87 PQEVYNLAAQSFVGA----SWNQPVTTGVVDGLGVTHLLEAIRQF----SPETRFYQASTSEMFGLIQAERQDENTPFYP 158 (335)
T ss_dssp CSEEEECCSCCCHHH----HTTSHHHHHHHHTHHHHHHHHHHHHH----CTTSEEEEEEEGGGGCSCSSSSBCTTSCCCC
T ss_pred CCEEEECccccchhh----hhhChHHHHHHHHHHHHHHHHHHHHh----CCCCeEEEEeCHHHhCCCCCCCCCcccCCCC
Confidence 899999999753211 12346789999999999999987542 213799999997654321 12
Q ss_pred ChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh----hhhhh--cc----c-----cCCCCCCH
Q psy4557 863 LAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD----VVDKY--DI----S-----KAVPVLTT 927 (958)
Q Consensus 863 ~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~----~~~~~--~~----~-----~~~~~~~p 927 (958)
...|+.||++.+.+++.++.++ |+++..+.|+.+..+......... ..... .. . ....++..
T Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~---~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v 235 (335)
T 1rpn_A 159 RSPYGVAKLYGHWITVNYRESF---GLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFA 235 (335)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEH
T ss_pred CChhHHHHHHHHHHHHHHHHHc---CCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEH
Confidence 4579999999999999998776 688888888877665432111000 00000 00 0 01125677
Q ss_pred HHHHHHHHHHhcCCC
Q psy4557 928 KEISQSIIFALLQPS 942 (958)
Q Consensus 928 ~~ia~~i~~~l~~~~ 942 (958)
+|+|++++.++..+.
T Consensus 236 ~Dva~a~~~~~~~~~ 250 (335)
T 1rpn_A 236 GDYVEAMWLMLQQDK 250 (335)
T ss_dssp HHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999887654
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.64 E-value=6e-16 Score=184.08 Aligned_cols=111 Identities=20% Similarity=0.257 Sum_probs=103.7
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.++.++|+++++ +|+++|+++. ++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|+++|
T Consensus 24 ~~~~~~l~~~~~-~p~~~A~~~~-~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 24 NFAAYLFRLNET-RAGKTAYIDD-TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV 101 (529)
T ss_dssp CHHHHHHHHTGG-GTTSEEEECS-SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred eHHHHHHHhhhc-cCCceEEEeC-CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence 357889999888 9999999864 67899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|+|+.++.+|+.+++++++++++|++..+.+.+
T Consensus 102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred ecCcccCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 999999999999999999999999988765443
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-16 Score=179.21 Aligned_cols=206 Identities=15% Similarity=0.169 Sum_probs=144.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcC-CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++|+++||||+|+||.+++++|+++| +.|++++|+..... . ..+. .+. +.+|+++.+.++++++. ..+
T Consensus 43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~-~~~~----~~~-~~~d~~~~~~~~~~~~~--~~~ 113 (357)
T 2x6t_A 43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-F-VNLV----DLN-IADYMDKEDFLIQIMAG--EEF 113 (357)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG-G-GGTT----TSC-CSEEEEHHHHHHHHHTT--CCC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch-h-hccc----Cce-EeeecCcHHHHHHHHhh--ccc
Confidence 4678999999999999999999999999 99999999865321 0 1111 111 56899988887776653 235
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC----------
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA---------- 861 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~---------- 861 (958)
+++|+||||||.... +.++++.++++|+.|+..+++++.+. +. +||++||.+..-..+
T Consensus 114 ~~~d~Vih~A~~~~~------~~~~~~~~~~~n~~~~~~ll~a~~~~-----~~-r~V~~SS~~v~g~~~~~~~~E~~~~ 181 (357)
T 2x6t_A 114 GDVEAIFHEGACSST------TEWDGKYMMDNNYQYSKELLHYCLER-----EI-PFLYASSAATYGGRTSDFIESREYE 181 (357)
T ss_dssp SSCCEEEECCSCCCT------TCCCHHHHHHHTHHHHHHHHHHHHHH-----TC-CEEEEEEGGGGCSCSSCCCSSGGGC
T ss_pred CCCCEEEECCcccCC------ccCCHHHHHHHHHHHHHHHHHHHHHc-----CC-eEEEEcchHHhCCCCCCCcCCcCCC
Confidence 689999999997643 22346889999999999999988652 23 999999987643322
Q ss_pred -CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC---CC--hhhhhhh---c---c----cc-CCCC
Q psy4557 862 -GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS---TD--RDVVDKY---D---I----SK-AVPV 924 (958)
Q Consensus 862 -~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~---~~--~~~~~~~---~---~----~~-~~~~ 924 (958)
....|+.+|++.+.+++.++.+ .|+++++|.||.+..+..... .. ....... . . .. ...+
T Consensus 182 ~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (357)
T 2x6t_A 182 KPLNVFGYSKFLFDEYVRQILPE---ANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDF 258 (357)
T ss_dssp CCSSHHHHHHHHHHHHHHHHGGG---CSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECE
T ss_pred CCCChhHHHHHHHHHHHHHHHHH---cCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEcc
Confidence 2568999999999999998765 489999999999988753210 00 0000000 0 0 01 1245
Q ss_pred CCHHHHHHHHHHHhcCCC
Q psy4557 925 LTTKEISQSIIFALLQPS 942 (958)
Q Consensus 925 ~~p~~ia~~i~~~l~~~~ 942 (958)
+.++|+|+++++++..+.
T Consensus 259 i~v~Dva~ai~~~~~~~~ 276 (357)
T 2x6t_A 259 VYVGDVADVNLWFLENGV 276 (357)
T ss_dssp EEHHHHHHHHHHHHHHCC
T ss_pred EEHHHHHHHHHHHHhcCC
Confidence 688999999999887654
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-15 Score=157.82 Aligned_cols=214 Identities=15% Similarity=0.135 Sum_probs=145.1
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+||||.+++++|++++ .+|+++.|... ++.+..... .++.++.+|++.
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~------~~~~~~~~~----------~~~~~~~~D~~~----- 63 (244)
T 3d3w_A 6 AGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQA------DLDSLVREC----------PGIEPVCVDLGD----- 63 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHH------HHHHHHHHS----------TTCEEEECCTTC-----
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHH------HHHHHHHHc----------CCCCEEEEeCCC-----
Confidence 45789999999999999999999764 68988888532 222221111 235566888763
Q ss_pred CcHHHHHHHhc---ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccC----C-CccEEEEecccccC
Q psy4557 398 KNQDEYVSLSY---EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLN----K-IKSFHYVSTDSIYP 462 (958)
Q Consensus 398 ~~~~~~~~l~~---~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~----~-~k~~~~vST~~v~~ 462 (958)
.+....+.+ .+|+|||+|+..... ..++...++|+.|+.++++.+... + ..+++++||...+.
T Consensus 64 --~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~ 141 (244)
T 3d3w_A 64 --WEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR 141 (244)
T ss_dssp --HHHHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS
T ss_pred --HHHHHHHHHHcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc
Confidence 455666654 589999999975431 123456789999999998877542 3 47899999987654
Q ss_pred CCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHH
Q psy4557 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI 538 (958)
Q Consensus 463 ~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~ 538 (958)
.. .....|+.||+..|.+++..+ ..|++++++|||.++++.....+........+.
T Consensus 142 ~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~--- 201 (244)
T 3d3w_A 142 AV-----------------TNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTML--- 201 (244)
T ss_dssp CC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHH---
T ss_pred CC-----------------CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHH---
Confidence 21 123479999999999987643 258999999999998865322121111111111
Q ss_pred HHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 539 TRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 539 ~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
. ..| ...+.+++++|++++.++... ...+++|++...
T Consensus 202 -~--~~~----~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 240 (244)
T 3d3w_A 202 -N--RIP----LGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp -H--TCT----TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -h--hCC----CCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 1 123 235789999999999988643 235788998764
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=173.10 Aligned_cols=170 Identities=16% Similarity=0.136 Sum_probs=131.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcC-CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+++|+++||||+|+||++++++|+++| ++|++++|+.+...+ .+. ....+.++.+|+++.+++.++++
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~l~-~~~~v~~~~~Dl~d~~~l~~~~~------ 98 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI---NVP-DHPAVRFSETSITDDALLASLQD------ 98 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG---GSC-CCTTEEEECSCTTCHHHHHHCCS------
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh---hcc-CCCceEEEECCCCCHHHHHHHhh------
Confidence 4678999999999999999999999999 999999998643211 111 13468888999999887665543
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-----------C--
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-----------R-- 858 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-----------~-- 858 (958)
++|+||||||..... .+.++++..+++|+.|+..+++++. +..+.++||++||.+.. .
T Consensus 99 -~~d~Vih~A~~~~~~----~~~~~~~~~~~~nv~~~~~ll~a~~----~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~ 169 (377)
T 2q1s_A 99 -EYDYVFHLATYHGNQ----SSIHDPLADHENNTLTTLKLYERLK----HFKRLKKVVYSAAGCSIAEKTFDDAKATEET 169 (377)
T ss_dssp -CCSEEEECCCCSCHH----HHHHCHHHHHHHHTHHHHHHHHHHT----TCSSCCEEEEEEEC--------------CCC
T ss_pred -CCCEEEECCCccCch----hhhhCHHHHHHHHHHHHHHHHHHHH----HhCCCCeEEEeCCHHHcCCCCCCCcCccccc
Confidence 799999999975321 2345678999999999999888762 12134699999997632 1
Q ss_pred ---CC-CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCC
Q psy4557 859 ---PF-AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELL 904 (958)
Q Consensus 859 ---~~-~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~ 904 (958)
+. .....|+.+|++.+.+++.++.++ |++++++.||.+..+..
T Consensus 170 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~ 216 (377)
T 2q1s_A 170 DIVSLHNNDSPYSMSKIFGEFYSVYYHKQH---QLPTVRARFQNVYGPGE 216 (377)
T ss_dssp CCCCSSCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTC
T ss_pred ccccccCCCCchHHHHHHHHHHHHHHHHHh---CCCEEEEeeccEECCCC
Confidence 22 345689999999999999998875 89999999999998764
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=176.76 Aligned_cols=207 Identities=20% Similarity=0.220 Sum_probs=141.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHH--HHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLK--TSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~--~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+|+++||||+|+||.+++++|+++|++|+++.|+.++.+++. ..+. ...++.++.+|+++.+++.++++ .
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~-------~ 80 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-ELGDLKIFRADLTDELSFEAPIA-------G 80 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-GGSCEEEEECCTTTSSSSHHHHT-------T
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-CCCcEEEEecCCCChHHHHHHHc-------C
Confidence 789999999999999999999999999999899865432111 1232 12357788999999887766653 4
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----C----C----
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-----P----F---- 860 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-----~----~---- 860 (958)
+|+|||+||.... . ..+..++.+++|+.|++.+++++.+.+ +.++||++||.++.. + .
T Consensus 81 ~D~Vih~A~~~~~---~--~~~~~~~~~~~nv~gt~~ll~aa~~~~----~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~ 151 (338)
T 2rh8_A 81 CDFVFHVATPVHF---A--SEDPENDMIKPAIQGVVNVMKACTRAK----SVKRVILTSSAAAVTINQLDGTGLVVDEKN 151 (338)
T ss_dssp CSEEEEESSCCCC--------------CHHHHHHHHHHHHHHHHCT----TCCEEEEECCHHHHHHHHHTCSCCCCCTTT
T ss_pred CCEEEEeCCccCC---C--CCCcHHHHHHHHHHHHHHHHHHHHHcC----CcCEEEEEecHHHeecCCcCCCCcccChhh
Confidence 7999999986421 1 112235689999999999999886532 247999999986321 0 0
Q ss_pred --------C---CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhh------h----hhcc-
Q psy4557 861 --------A---GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVV------D----KYDI- 918 (958)
Q Consensus 861 --------~---~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~------~----~~~~- 918 (958)
| ....|+.||++.+.+.+.++.+ .|+++++|.||.|.++........... . .+..
T Consensus 152 ~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~ 228 (338)
T 2rh8_A 152 WTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEE---NNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGM 228 (338)
T ss_dssp TTCC-------CCCCCCTTSCCHHHHHHHHHHHH---HTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchhhccccCCccchHHHHHHHHHHHHHHHHHH---cCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccc
Confidence 0 1125999999999888877654 389999999999999875432111100 0 0000
Q ss_pred ------ccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 919 ------SKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 919 ------~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.....++.++|+|+++++++..+.
T Consensus 229 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 258 (338)
T 2rh8_A 229 KGMQMLSGSVSIAHVEDVCRAHIFVAEKES 258 (338)
T ss_dssp HHHHHHHSSEEEEEHHHHHHHHHHHHHCTT
T ss_pred cccccccCcccEEEHHHHHHHHHHHHcCCC
Confidence 001136789999999999886553
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.6e-16 Score=196.58 Aligned_cols=117 Identities=16% Similarity=0.306 Sum_probs=108.5
Q ss_pred CCccccHHHHHHHHHHhCCCCeEEEeC-CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHH
Q psy4557 9 YDAEGALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (958)
Q Consensus 9 ~~~~~~l~~~~~~~a~~~pd~~Al~~~-~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~ 87 (958)
+|...+++++|.++++++||++|+++. .++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~ 136 (979)
T 3tsy_A 57 IPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFR 136 (979)
T ss_dssp CCTTSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHc
Confidence 344468999999999999999999874 2578999999999999999999999999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 88 G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|+++|||||.+|++|+.++++++++++||++..+.+.+
T Consensus 137 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 137 GATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 99999999999999999999999999999998766544
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-16 Score=182.91 Aligned_cols=114 Identities=25% Similarity=0.322 Sum_probs=104.6
Q ss_pred cccHHHHHHHHHHhCCCCeEEEeCC------C--ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRTPDKIAVVDHD------G--RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIA 83 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~pd~~Al~~~~------~--~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la 83 (958)
..++.++|+++++++||++|+++.+ + +++||+||+++++++|++|++.|+ +||+|+|+++|++++++++||
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA 101 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLG 101 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHH
Confidence 3579999999999999999998632 1 689999999999999999999996 999999999999999999999
Q ss_pred HHHHCCeEecCCC---CCCHHHHHHHHhhcCCeEEEEcccchhhhh
Q psy4557 84 IHKAGGGYLPLET---SYPPALLESVLDDAKPSIVITKGEYMDRLE 126 (958)
Q Consensus 84 ~~k~G~v~vPln~---~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 126 (958)
|+++|+++||||+ .++.+|+.+++++++++++|++..+.+.+.
T Consensus 102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred HHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 9999999999999 889999999999999999999987765544
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.6e-16 Score=188.54 Aligned_cols=110 Identities=29% Similarity=0.318 Sum_probs=102.8
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeC-----CCceeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~-----~~~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~Vai~~~n~~~~v~~~la~~k 86 (958)
.++.++|+++++++||++|+++. .++++||+||.++++++|++|+ ++|+++||||+|+++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 46788999999999999999862 2468999999999999999999 99999999999999999999999999999
Q ss_pred HCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccch
Q psy4557 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 87 ~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
+|+++||+|+.++.+++.++|++++|++||+++...
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~ 197 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESN 197 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCC
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccc
Confidence 999999999999999999999999999999987653
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.5e-15 Score=157.24 Aligned_cols=220 Identities=11% Similarity=0.019 Sum_probs=146.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++|||||||||||.+++++|++++ .+|+++.|.... .+.+.+.+.. ...++.++.+|++.
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~---~~~~~~~l~~---------~~~~~~~~~~D~~~----- 73 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAG-ARVIIADLDEAM---ATKAVEDLRM---------EGHDVSSVVMDVTN----- 73 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH---HHHHHHHHHH---------TTCCEEEEECCTTC-----
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHH---HHHHHHHHHh---------cCCceEEEEecCCC-----
Confidence 45789999999999999999999874 689988885321 2222222221 13478899999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc-----cC---hHHHHhhhHHHHHHHHHhhcc----CCCccEEEEecc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI-----LP---YNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~-----~~---~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~ 458 (958)
.+....+.+ .+|+|||||+..... .+ +....++|+.|+.++++.+.. .+..+++++||.
T Consensus 74 --~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 151 (260)
T 3awd_A 74 --TESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSM 151 (260)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecc
Confidence 344444443 789999999965411 12 245678999999999987753 345789999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.+.... ..+...|+.||...|.+++..+ ..|++++++|||.++++.........++.
T Consensus 152 ~~~~~~~---------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~--- 213 (260)
T 3awd_A 152 SGLIVNR---------------PQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELY--- 213 (260)
T ss_dssp GGTSCCS---------------SSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHH---
T ss_pred hhcccCC---------------CCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHH---
Confidence 6543110 0123579999999999987643 26999999999999987532111111111
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
..... ..|. ..+..++++|++++.++... ...+.+|++...
T Consensus 214 -~~~~~--~~~~----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 256 (260)
T 3awd_A 214 -DAWIA--GTPM----GRVGQPDEVASVVQFLASDAASLMTGAIVNVDAG 256 (260)
T ss_dssp -HHHHH--TCTT----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -HHHHh--cCCc----CCCCCHHHHHHHHHHHhCchhccCCCcEEEECCc
Confidence 11111 1231 24678999999999987643 235788998764
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=189.73 Aligned_cols=110 Identities=16% Similarity=0.250 Sum_probs=102.4
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeC-----CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHH
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~-----~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~ 87 (958)
.++.++|+++++++||++|+++. +++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 155 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 155 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 35788899999999999999862 2368999999999999999999999999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccch
Q psy4557 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 88 G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
|+++||+|+.++++++.++++++++++||+++.+.
T Consensus 156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~ 190 (652)
T 1pg4_A 156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGV 190 (652)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEE
T ss_pred CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccc
Confidence 99999999999999999999999999999987654
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=168.84 Aligned_cols=211 Identities=16% Similarity=0.128 Sum_probs=146.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcC--CeEEEEecChh--hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRID--RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~~--~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
++++|+++||||+|+||.+++++|+++| +.|++.+|+.. ..+.+. .+. ....+.++.+|+++.+++.++++..
T Consensus 21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~-~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~- 97 (346)
T 4egb_A 21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVK-SIQ-DHPNYYFVKGEIQNGELLEHVIKER- 97 (346)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGT-TTT-TCTTEEEEECCTTCHHHHHHHHHHH-
T ss_pred ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhh-hhc-cCCCeEEEEcCCCCHHHHHHHHhhc-
Confidence 3578899999999999999999999999 67777777531 122111 111 1246889999999999998888753
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC--------
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-------- 860 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-------- 860 (958)
++|+||||||..... .+.+.++..+++|+.|+..+++++.. . +.+++|++||.+..-..
T Consensus 98 ----~~d~Vih~A~~~~~~----~~~~~~~~~~~~nv~~~~~ll~a~~~----~-~~~~~v~~SS~~vy~~~~~~~~~~E 164 (346)
T 4egb_A 98 ----DVQVIVNFAAESHVD----RSIENPIPFYDTNVIGTVTLLELVKK----Y-PHIKLVQVSTDEVYGSLGKTGRFTE 164 (346)
T ss_dssp ----TCCEEEECCCCC-------------CHHHHHHTHHHHHHHHHHHH----S-TTSEEEEEEEGGGGCCCCSSCCBCT
T ss_pred ----CCCEEEECCcccchh----hhhhCHHHHHHHHHHHHHHHHHHHHh----c-CCCEEEEeCchHHhCCCCcCCCcCC
Confidence 689999999986432 24466788999999999998887743 2 34799999997654322
Q ss_pred ----CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc------cc----cCCCCC
Q psy4557 861 ----AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD------IS----KAVPVL 925 (958)
Q Consensus 861 ----~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~------~~----~~~~~~ 925 (958)
.....|+.+|.+.+.+++.++.+. |++++++.||.+..+....... ........ .. ....++
T Consensus 165 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 241 (346)
T 4egb_A 165 ETPLAPNSPYSSSKASADMIALAYYKTY---QLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWL 241 (346)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEETTSCCEECEE
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceeeCCCCeEEeeE
Confidence 124679999999999999998875 7999999999998875422110 01111100 00 011235
Q ss_pred CHHHHHHHHHHHhcCCC
Q psy4557 926 TTKEISQSIIFALLQPS 942 (958)
Q Consensus 926 ~p~~ia~~i~~~l~~~~ 942 (958)
.++|+|+++++++..+.
T Consensus 242 ~v~Dva~a~~~~~~~~~ 258 (346)
T 4egb_A 242 HVTDHCSAIDVVLHKGR 258 (346)
T ss_dssp EHHHHHHHHHHHHHHCC
T ss_pred EHHHHHHHHHHHHhcCC
Confidence 68999999999887665
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-16 Score=171.66 Aligned_cols=192 Identities=15% Similarity=0.139 Sum_probs=112.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+++||||+|+||++++++|+++|++|++++|+.+. . . ++.+|+++.+++.++++.. ++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-----------~-~--~~~~Dl~d~~~~~~~~~~~-----~~d 62 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-----------P-K--FEQVNLLDSNAVHHIIHDF-----QPH 62 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC--------------------------------CHHHHHHH-----CCS
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-----------C-C--eEEecCCCHHHHHHHHHhh-----CCC
Confidence 6899999999999999999999999999999987543 1 1 6678999998888877654 689
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC----------CCCChh
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP----------FAGLAV 865 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~----------~~~~~~ 865 (958)
++|||||.... ..+.++++.++++|+.|+..+++++.+. + ++||++||.+...+ ......
T Consensus 63 ~vih~A~~~~~----~~~~~~~~~~~~~n~~~~~~l~~a~~~~-----~-~~~v~~SS~~v~~~~~~~~~E~~~~~~~~~ 132 (315)
T 2ydy_A 63 VIVHCAAERRP----DVVENQPDAASQLNVDASGNLAKEAAAV-----G-AFLIYISSDYVFDGTNPPYREEDIPAPLNL 132 (315)
T ss_dssp EEEECC-----------------------CHHHHHHHHHHHHH-----T-CEEEEEEEGGGSCSSSCSBCTTSCCCCCSH
T ss_pred EEEECCcccCh----hhhhcCHHHHHHHHHHHHHHHHHHHHHc-----C-CeEEEEchHHHcCCCCCCCCCCCCCCCcCH
Confidence 99999997542 2245678999999999999999988652 2 59999999876543 334678
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccC---CCCCCCCChhhh-hh--hcc--ccCCCCCCHHHHHHHHHHH
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKT---ELLSHSTDRDVV-DK--YDI--SKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T---~~~~~~~~~~~~-~~--~~~--~~~~~~~~p~~ia~~i~~~ 937 (958)
|+.+|++.+.+++.++.++ ..+|++.|. |...+ .+..... .... .. ... .....++.++|+|++++++
T Consensus 133 Y~~sK~~~e~~~~~~~~~~--~~lR~~~v~-G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 208 (315)
T 2ydy_A 133 YGKTKLDGEKAVLENNLGA--AVLRIPILY-GEVEKLEESAVTVMF-DKVQFSNKSANMDHWQQRFPTHVKDVATVCRQL 208 (315)
T ss_dssp HHHHHHHHHHHHHHHCTTC--EEEEECSEE-CSCSSGGGSTTGGGH-HHHHCCSSCEEEECSSBBCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCe--EEEeeeeee-CCCCcccccHHHHHH-HHHHhcCCCeeeccCceECcEEHHHHHHHHHHH
Confidence 9999999999999875332 345555555 55444 2211000 0000 00 000 1123467899999999998
Q ss_pred hcC
Q psy4557 938 LLQ 940 (958)
Q Consensus 938 l~~ 940 (958)
+.+
T Consensus 209 ~~~ 211 (315)
T 2ydy_A 209 AEK 211 (315)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.8e-16 Score=183.88 Aligned_cols=112 Identities=23% Similarity=0.319 Sum_probs=104.1
Q ss_pred ccHHH-HHHHHHHhCCCCeEEEeC-CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 13 GALHY-MFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 13 ~~l~~-~~~~~a~~~pd~~Al~~~-~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
.++.+ ++.++++++ +++|+++. +++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47888 888889999 99999863 3578999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
+|||||.++.+|+.+++++++++++|++.++.+.+
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 138 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKV 138 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHH
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 99999999999999999999999999998765543
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=183.47 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=104.0
Q ss_pred ccHHHHHHHHHHh-----CCCCeEEEeCC----CceeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHH
Q psy4557 13 GALHYMFRNQAKR-----TPDKIAVVDHD----GRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYI 82 (958)
Q Consensus 13 ~~l~~~~~~~a~~-----~pd~~Al~~~~----~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~n~~~~v~~~l 82 (958)
.++.++|++++++ +||++|+++.+ ++++||+||+++++++|++|++. |+++||+|+|+++|++++++++|
T Consensus 38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~l 117 (570)
T 3c5e_A 38 NFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVIL 117 (570)
T ss_dssp CHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHH
T ss_pred cHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3567899999998 99999998621 36899999999999999999998 99999999999999999999999
Q ss_pred HHHHHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 83 AIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 83 a~~k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
||+++|+++|||||+++.+|+.+++++++++++|+++++.+.+
T Consensus 118 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 118 GCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred HHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 9999999999999999999999999999999999988765544
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-15 Score=160.21 Aligned_cols=238 Identities=11% Similarity=0.056 Sum_probs=147.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|+++ +.+|+++.|... ..+.+.+.+.... ....++.++.+|++.
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~---~~~~~~~~~~~~~------~~~~~~~~~~~D~~~----- 69 (278)
T 1spx_A 5 AEKVAIITGSSNGIGRATAVLFARE-GAKVTITGRHAE---RLEETRQQILAAG------VSEQNVNSVVADVTT----- 69 (278)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHH---HHHHHHHHHHHTT------CCGGGEEEEECCTTS-----
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHH---HHHHHHHHHHhcc------cCCCceeEEecccCC-----
Confidence 4568999999999999999999986 478988888532 1222222211100 112468889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc-----------cChHHHHhhhHHHHHHHHHhhccC----CCccEEEE
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI-----------LPYNALYKSNVLATKNLIEFSFLN----KIKSFHYV 455 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~-----------~~~~~~~~~NV~gt~~ll~~a~~~----~~k~~~~v 455 (958)
.+....+.+ .+|++||||+..... ..++....+|+.|+.++++.+... + .+++++
T Consensus 70 --~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~i 146 (278)
T 1spx_A 70 --DAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNI 146 (278)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEE
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEE
Confidence 345555544 799999999975321 123456789999999999877542 4 789999
Q ss_pred ecccc-cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcC-hhH
Q psy4557 456 STDSI-YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWN-LVD 529 (958)
Q Consensus 456 ST~~v-~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n-~~d 529 (958)
||.+. +... .....|+.||+..|.+.+..+ ..|++++++|||.|.++....... ..+
T Consensus 147 sS~~~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~ 209 (278)
T 1spx_A 147 SSIASGLHAT-----------------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEET 209 (278)
T ss_dssp CCTTSSSSCC-----------------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC----------
T ss_pred ecccccccCC-----------------CCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchh
Confidence 99765 4311 112469999999999887632 369999999999998775322111 011
Q ss_pred H--HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC---CCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 530 L--NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN---NANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 530 ~--~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~---~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
. +......... ..|. ..+..++++|++++.++.... ..+.+|++.....+++.++.+.+.+
T Consensus 210 ~~~~~~~~~~~~~--~~p~----~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~ 275 (278)
T 1spx_A 210 SKKFYSTMATMKE--CVPA----GVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAK 275 (278)
T ss_dssp ----HHHHHHHHH--HCTT----SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC----------
T ss_pred hhhhhHHHHHHHh--cCCC----cCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHH
Confidence 1 0000111111 1232 246789999999999876432 3588999998888888888877654
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.1e-15 Score=159.09 Aligned_cols=218 Identities=10% Similarity=0.085 Sum_probs=146.1
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+||||.+++++|++++ .+|+++.|... ...+.+.+.+.. ...++.++.+|++.
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G-~~v~~~~r~~~--~~~~~~~~~l~~---------~~~~~~~~~~D~~~----- 82 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSSS--KAAEEVVAELKK---------LGAQGVAIQADISK----- 82 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCH--HHHHHHHHHHHH---------TTCCEEEEECCTTS-----
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCch--HHHHHHHHHHHh---------cCCcEEEEEecCCC-----
Confidence 56789999999999999999999874 68888888422 112222222221 13578889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhccC---CCccEEEEecccc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSFLN---KIKSFHYVSTDSI 460 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~~~---~~k~~~~vST~~v 460 (958)
.+....+.+ .+|+|||+|+..... . .++...++|+.|+.++++.+... + .+|+++||.+.
T Consensus 83 --~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~ 159 (274)
T 1ja9_A 83 --PSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAA 159 (274)
T ss_dssp --HHHHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHh
Confidence 345555443 799999999975431 1 23456789999999998876542 3 68999999877
Q ss_pred c-CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCC-----------C
Q psy4557 461 Y-PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFK-----------N 524 (958)
Q Consensus 461 ~-~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g-----------~ 524 (958)
+ ... .....|+.||+..|.+++..+ ..|++++++|||.+.++.... .
T Consensus 160 ~~~~~-----------------~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~ 222 (274)
T 1ja9_A 160 VMTGI-----------------PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKG 222 (274)
T ss_dssp TCCSC-----------------CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTT
T ss_pred ccCCC-----------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhccccccccccccc
Confidence 6 311 112469999999999987643 349999999999998754210 0
Q ss_pred cChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 525 WNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 525 ~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
....++ ..... .+ .| ..++++++++|++++.++.... ..+++|++...
T Consensus 223 ~~~~~~----~~~~~-~~-~~----~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 223 MPQEKI----DEGLA-NM-NP----LKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp CCHHHH----HHHHH-HT-ST----TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CchHHH----HHHHH-hc-CC----CCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 000111 11111 11 12 2357899999999999886543 25789998753
|
| >2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-16 Score=142.34 Aligned_cols=75 Identities=20% Similarity=0.438 Sum_probs=70.2
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCCCCCCCchhhcCccHHHHHHHHHHHHHHhC-CCCChHHHhcCCcHHHHHHHHhc
Q psy4557 199 DESMFQSQKNIAKIWCKILN-LYTLDKDENFFEIGGHSLTAALCISKMNEELS-LNLSIKDLFAHPTVQEMAALLEN 273 (958)
Q Consensus 199 ~~~~~~~e~~l~~iw~~vL~-~~~i~~~~~FF~lGgdSL~a~~l~~~i~~~~~-~~l~~~~l~~~pTi~~la~~i~~ 273 (958)
.++.+++|+.|++||+++|+ .+.+++++|||++|||||+|++|+.+|+++|+ +++++.+||++||+++||+.|..
T Consensus 20 t~~~~~~E~~La~iW~~vL~~~~~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~pTl~~lA~~l~~ 96 (110)
T 2cq8_A 20 TEAELVTAEAVRSVWQRILPKVLEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVR 96 (110)
T ss_dssp CTTHHHHHHHHHHHHHHHCSSCSCCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhCCCCCCCCCCCHHhcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhCCCHHHHHHHHHH
Confidence 34456699999999999999 88999999999999999999999999999999 99999999999999999999964
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8.2e-15 Score=158.06 Aligned_cols=217 Identities=16% Similarity=0.103 Sum_probs=133.1
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||||+||.+++++|++++ .+|+++.|... ..+.+.+.+.. ...++.++.+|++.
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~---~~~~~~~~~~~---------~~~~~~~~~~D~~~----- 74 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEY---ELNECLSKWQK---------KGFQVTGSVCDASL----- 74 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHHHH---------TTCCEEEEECCTTS-----
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHH---HHHHHHHHHHh---------cCCeeEEEECCCCC-----
Confidence 46789999999999999999999874 68888888532 12222222211 12468888999874
Q ss_pred CcHHHHHHHh--------cccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 398 KNQDEYVSLS--------YEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~--------~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
.+....+. ..+|+|||+|+..... . .++....+|+.|+.++++.+. +.+.++|+++||.
T Consensus 75 --~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~ 152 (266)
T 1xq1_A 75 --RPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSI 152 (266)
T ss_dssp --HHHHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC--
T ss_pred --HHHHHHHHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 34444443 5789999999975321 1 234567899999999998873 3456799999998
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.+... .....|+.||+..|.+++..+ ..|++++++|||.++++....... ..+...+
T Consensus 153 ~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~ 214 (266)
T 1xq1_A 153 AGVVSA-----------------SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYD-DEFKKVV 214 (266)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-----------------
T ss_pred hhccCC-----------------CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcC-HHHHHHH
Confidence 765321 123579999999999987643 349999999999999876432210 1111111
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
. ...|- ..+..++++|++++.++... ...++++++...
T Consensus 215 ~------~~~~~----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 254 (266)
T 1xq1_A 215 I------SRKPL----GRFGEPEEVSSLVAFLCMPAASYITGQTICVDGG 254 (266)
T ss_dssp -------------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCC
T ss_pred H------hcCCC----CCCcCHHHHHHHHHHHcCccccCccCcEEEEcCC
Confidence 0 11121 23677899999999987643 234778888764
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.1e-15 Score=156.41 Aligned_cols=218 Identities=13% Similarity=0.118 Sum_probs=144.5
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||||+||.+++++|++++ .+|+++.|... ..+.+.+.+ . .....++.++.+|++.
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G-~~V~~~~r~~~---~~~~~~~~~-----~---~~~~~~~~~~~~D~~~------ 63 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARG-DRVAALDLSAE---TLEETARTH-----W---HAYADKVLRVRADVAD------ 63 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHH-----S---TTTGGGEEEEECCTTC------
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHH---HHHHHHHHH-----H---HhcCCcEEEEEecCCC------
Confidence 3579999999999999999999875 68888888532 122222111 0 0113578889999874
Q ss_pred cHHHHHHHhc-------ccCEEEEcccccCccc----------ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEec
Q psy4557 399 NQDEYVSLSY-------EIDMIIHAAAFVNLIL----------PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVST 457 (958)
Q Consensus 399 ~~~~~~~l~~-------~vd~IiH~AA~v~~~~----------~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST 457 (958)
.+....+.+ .+|+|||+|+...... .++....+|+.|+.++++.+. +.+.++++++||
T Consensus 64 -~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS 142 (250)
T 2cfc_A 64 -EGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIAS 142 (250)
T ss_dssp -HHHHHHHHHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred -HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 344554443 7999999999754321 234567899999987766553 335579999999
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
.+.+... .....|+.||+..|.+++..+ ..|++++++|||.++++.........++
T Consensus 143 ~~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~--- 202 (250)
T 2cfc_A 143 VASLVAF-----------------PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPEL--- 202 (250)
T ss_dssp GGGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHH---
T ss_pred hhhccCC-----------------CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHH---
Confidence 8765321 123479999999999987643 3499999999999998753211111111
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.+... ...|- ..+...+++|++++.++.... ..++++++...
T Consensus 203 -~~~~~--~~~~~----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 246 (250)
T 2cfc_A 203 -RDQVL--ARIPQ----KEIGTAAQVADAVMFLAGEDATYVNGAALVMDGA 246 (250)
T ss_dssp -HHHHH--TTCTT----CSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred -HHHHH--hcCCC----CCCcCHHHHHHHHHHHcCchhhcccCCEEEECCc
Confidence 11111 12231 246788999999999886542 24778888653
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-15 Score=164.42 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=123.5
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh----hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI----DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~----~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+++||||+|+||++++++|+++|++|++++|.. +.++.+.+ +. +.++.++.+|+++.+++.++++. + +
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~Dl~~~~~~~~~~~~----~-~ 73 (338)
T 1udb_A 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LG--GKHPTFVEGDIRNEALMTEILHD----H-A 73 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHH-HH--TSCCEEEECCTTCHHHHHHHHHH----T-T
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHh-hc--CCcceEEEccCCCHHHHHHHhhc----c-C
Confidence 689999999999999999999999999988643 22333222 11 23467788999999988877754 2 6
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----------CC-C
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-----------PF-A 861 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-----------~~-~ 861 (958)
+|+||||||...... ..+.+...+++|+.|+..+++++.. . +.++||++||.+..- +. |
T Consensus 74 ~D~vih~A~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~ 144 (338)
T 1udb_A 74 IDTVIHFAGLKAVGE----SVQKPLEYYDNNVNGTLRLISAMRA----A-NVKNFIFSSSATVYGDNPKIPYVESFPTGT 144 (338)
T ss_dssp CSEEEECCSCCCHHH----HHHCHHHHHHHHHHHHHHHHHHHHH----H-TCCEEEEEEEGGGGCSCCSSSBCTTSCCCC
T ss_pred CCEEEECCccCcccc----chhcHHHHHHHHHHHHHHHHHHHHh----c-CCCeEEEEccHHHhCCCCCCCcCcccCCCC
Confidence 999999999753221 2345678899999999998876432 2 347999999976532 11 2
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCccc
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVK 900 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~ 900 (958)
....|++||++.+.+++.++.+. .|+++..+.|+.+.
T Consensus 145 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~ilR~~~v~ 181 (338)
T 1udb_A 145 PQSPYGKSKLMVEQILTDLQKAQ--PDWSIALLRYFNPV 181 (338)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHS--TTCEEEEEEECEEE
T ss_pred CCChHHHHHHHHHHHHHHHHHhc--CCCceEEEeeceec
Confidence 36789999999999999999884 47899888876554
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-15 Score=163.08 Aligned_cols=164 Identities=20% Similarity=0.161 Sum_probs=129.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|+++||||+|+||++++++|+++|++|++++|+..... +.+ ...+.++.+|+++.+++.+++++ +++|+
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~---~~~~~~~~~D~~~~~~~~~~~~~-----~~~d~ 70 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE---DAI---TEGAKFYNGDLRDKAFLRDVFTQ-----ENIEA 70 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG---GGS---CTTSEEEECCTTCHHHHHHHHHH-----SCEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch---hhc---CCCcEEEECCCCCHHHHHHHHhh-----cCCCE
Confidence 57999999999999999999999999999998754322 111 12567789999999988877764 47999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-----------CCCChh
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP-----------FAGLAV 865 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~-----------~~~~~~ 865 (958)
+|||||..... .+.++++..+++|+.|+..+++++.. .+.+++|++||.+..-. ......
T Consensus 71 vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~a~~~-----~~~~~~v~~Ss~~~~~~~~~~~~~E~~~~~~~~~ 141 (330)
T 2c20_A 71 VMHFAADSLVG----VSMEKPLQYYNNNVYGALCLLEVMDE-----FKVDKFIFSSTAATYGEVDVDLITEETMTNPTNT 141 (330)
T ss_dssp EEECCCCCCHH----HHHHSHHHHHHHHHHHHHHHHHHHHH-----TTCCEEEEECCGGGGCSCSSSSBCTTSCCCCSSH
T ss_pred EEECCcccCcc----ccccCHHHHHHHHhHHHHHHHHHHHH-----cCCCEEEEeCCceeeCCCCCCCCCcCCCCCCCCh
Confidence 99999975322 13456789999999999999887632 23479999999765421 123578
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTEL 903 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~ 903 (958)
|+.+|++.+.+++.++.++ |++++++.||.+..+.
T Consensus 142 Y~~sK~~~e~~~~~~~~~~---~~~~~ilrp~~v~G~~ 176 (330)
T 2c20_A 142 YGETKLAIEKMLHWYSQAS---NLRYKIFRYFNVAGAT 176 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTS---SCEEEEEECSEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHh---CCcEEEEecCcccCCC
Confidence 9999999999999988764 8999999999988764
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-15 Score=155.22 Aligned_cols=195 Identities=15% Similarity=0.077 Sum_probs=136.9
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCC------eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKC------TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSL 392 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~------~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~ 392 (958)
+++||||||+|+||.+++++|++++.. +|+++.|... ..+.+.+.+.. ...++.++.+|++.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~---~~~~~~~~~~~---------~~~~~~~~~~D~~~ 69 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAA---DLEKISLECRA---------EGALTDTITADISD 69 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHH---HHHHHHHHHHT---------TTCEEEEEECCTTS
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHH---HHHHHHHHHHc---------cCCeeeEEEecCCC
Confidence 357999999999999999999987532 7888888532 22223222211 13578889999874
Q ss_pred CCCCCCcHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc----CCCccEEE
Q psy4557 393 EMLGLKNQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL----NKIKSFHY 454 (958)
Q Consensus 393 ~~lGL~~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~ 454 (958)
.+....+.+ .+|+|||||+..... ..++..+.+|+.|+.++++.+.. .+..+|++
T Consensus 70 -------~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 142 (244)
T 2bd0_A 70 -------MADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFF 142 (244)
T ss_dssp -------HHHHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred -------HHHHHHHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 344544443 699999999975431 12345678999999999887642 34579999
Q ss_pred EecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHH
Q psy4557 455 VSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDL 530 (958)
Q Consensus 455 vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~ 530 (958)
+||.+.+... .....|+.||+..|.+++.. ...|++++++|||.++++........
T Consensus 143 isS~~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--- 202 (244)
T 2bd0_A 143 ITSVAATKAF-----------------RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDE--- 202 (244)
T ss_dssp ECCGGGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCST---
T ss_pred EecchhcCCC-----------------CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhcccc---
Confidence 9998776421 12357999999999988653 24699999999999998764221110
Q ss_pred HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc
Q psy4557 531 NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV 570 (958)
Q Consensus 531 ~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~ 570 (958)
. ...++.++++|++++.++...
T Consensus 203 ---------------~---~~~~~~~~dva~~~~~l~~~~ 224 (244)
T 2bd0_A 203 ---------------M---QALMMMPEDIAAPVVQAYLQP 224 (244)
T ss_dssp ---------------T---GGGSBCHHHHHHHHHHHHTSC
T ss_pred ---------------c---cccCCCHHHHHHHHHHHHhCC
Confidence 0 124688999999999988654
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.3e-15 Score=156.31 Aligned_cols=207 Identities=14% Similarity=0.083 Sum_probs=144.9
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||||+||.+++++|+++ +.+|+++.|... .+++.++.+|++.
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~------------------------~~~~~~~~~D~~~------ 50 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKAR-GYRVVVLDLRRE------------------------GEDLIYVEGDVTR------ 50 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCC------------------------SSSSEEEECCTTC------
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEccCcc------------------------ccceEEEeCCCCC------
Confidence 357999999999999999999976 478888887532 1245778889874
Q ss_pred cHHHHHHHhc------ccCEEEEcccccCccc-----------ChHHHHhhhHHHHHHHHHhhccC----C------Ccc
Q psy4557 399 NQDEYVSLSY------EIDMIIHAAAFVNLIL-----------PYNALYKSNVLATKNLIEFSFLN----K------IKS 451 (958)
Q Consensus 399 ~~~~~~~l~~------~vd~IiH~AA~v~~~~-----------~~~~~~~~NV~gt~~ll~~a~~~----~------~k~ 451 (958)
.+....+.+ .+|+|||+|+...... .++....+|+.|+.++++.+... + ..+
T Consensus 51 -~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 129 (242)
T 1uay_A 51 -EEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGV 129 (242)
T ss_dssp -HHHHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEE
T ss_pred -HHHHHHHHHHHHhhCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeE
Confidence 355555554 7899999999754321 44567789999999999887532 1 138
Q ss_pred EEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcCh
Q psy4557 452 FHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNL 527 (958)
Q Consensus 452 ~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~ 527 (958)
|+++||.+.+... .....|+.||...|.+++..+ ..|++++++|||.++++...+. .
T Consensus 130 iv~~sS~~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~-~- 190 (242)
T 1uay_A 130 IVNTASVAAFEGQ-----------------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL-P- 190 (242)
T ss_dssp EEEECCTHHHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS-C-
T ss_pred EEEeCChhhccCC-----------------CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhcc-c-
Confidence 9999998776421 123479999999999886633 3499999999999988753221 1
Q ss_pred hHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCC
Q psy4557 528 VDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPI 585 (958)
Q Consensus 528 ~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~ 585 (958)
..+ .... . ...|- ...+..+|++|++++.++......+++|++.....+
T Consensus 191 ~~~----~~~~-~-~~~~~---~~~~~~~~dva~~~~~l~~~~~~~G~~~~v~gG~~~ 239 (242)
T 1uay_A 191 EKA----KASL-A-AQVPF---PPRLGRPEEYAALVLHILENPMLNGEVVRLDGALRM 239 (242)
T ss_dssp HHH----HHHH-H-TTCCS---SCSCCCHHHHHHHHHHHHHCTTCCSCEEEESTTCCC
T ss_pred hhH----HHHH-H-hhCCC---cccCCCHHHHHHHHHHHhcCCCCCCcEEEEcCCeec
Confidence 111 1111 1 12231 124678999999999988764456789998765443
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-15 Score=157.28 Aligned_cols=230 Identities=12% Similarity=0.015 Sum_probs=142.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||+|+||.+++++|++++ .+|+++.|.... .+.+.+.+...+... .....++.++.+|++.
T Consensus 6 ~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~----- 74 (264)
T 2pd6_A 6 RSALALVTGAGSGIGRAVSVRLAGEG-ATVAACDLDRAA---AQETVRLLGGPGSKE--GPPRGNHAAFQADVSE----- 74 (264)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHH---HHHHHHTC--------------CCEEEECCTTS-----
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHH---HHHHHHHHHhcCccc--cccCcceEEEEecCCC-----
Confidence 45789999999999999999999874 689998885321 122211111110000 0001468889999874
Q ss_pred CcHHHHHHHhc-------cc-CEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccC----C-CccEEEEec
Q psy4557 398 KNQDEYVSLSY-------EI-DMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLN----K-IKSFHYVST 457 (958)
Q Consensus 398 ~~~~~~~~l~~-------~v-d~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~----~-~k~~~~vST 457 (958)
.+....+.+ .+ |+|||||+..... ..++....+|+.|+.++++.+... + ..+|+++||
T Consensus 75 --~~~~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS 152 (264)
T 2pd6_A 75 --ARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISS 152 (264)
T ss_dssp --HHHHHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred --HHHHHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 344555443 34 9999999976431 123456789999999999887542 2 468999999
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
...+... .....|+.||+..|.+++..+ ..|++++++|||.++++..... . ..
T Consensus 153 ~~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~-----~~ 209 (264)
T 2pd6_A 153 IVGKVGN-----------------VGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKV-P-----QK 209 (264)
T ss_dssp THHHHCC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC-------------
T ss_pred hhhccCC-----------------CCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhc-C-----HH
Confidence 7543211 123479999999999887643 3699999999999998753211 0 01
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCCCHHH
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPIHIKT 589 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~~~ 589 (958)
+.+... ...| ...+..++++|++++.++... ...+.++++.....++++.
T Consensus 210 ~~~~~~--~~~~----~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~ 261 (264)
T 2pd6_A 210 VVDKIT--EMIP----MGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLFMAENL 261 (264)
T ss_dssp ---CTG--GGCT----TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC------
T ss_pred HHHHHH--HhCC----CCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCceecccc
Confidence 111000 1112 124678999999999887643 2357889988776655443
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=179.35 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=99.4
Q ss_pred cHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEec
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYLP 93 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~vP 93 (958)
++.++|.++++++||++|+++ +++++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|+++||
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~-~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITD-GQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEEC-SSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHhcCCceEEEe-CCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 356789999999999999986 467999999999999999999987 8999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEcccchhh
Q psy4557 94 LETSYPPALLESVLDDAKPSIVITKGEYMDR 124 (958)
Q Consensus 94 ln~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 124 (958)
+|++++.+++.+++++++++++|++.++...
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 108 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELR 108 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCT
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEccccccc
Confidence 9999999999999999999999998876543
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=156.83 Aligned_cols=228 Identities=12% Similarity=0.048 Sum_probs=148.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|++++ .+|+++.|.... .+.+.+.+... ...++.++.+|++.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~---~~~~~~~l~~~--------~~~~~~~~~~D~~~----- 68 (263)
T 3ai3_A 6 SGKVAVITGSSSGIGLAIAEGFAKEG-AHIVLVARQVDR---LHEAARSLKEK--------FGVRVLEVAVDVAT----- 68 (263)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHH---HHHHHHHHHHH--------HCCCEEEEECCTTS-----
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHH---HHHHHHHHHHh--------cCCceEEEEcCCCC-----
Confidence 45789999999999999999999874 689888885321 22222222111 12468889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
.+....+.+ .+|++||||+..... . .++....+|+.|+.++++.+. +.+..+++++||.+
T Consensus 69 --~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~ 146 (263)
T 3ai3_A 69 --PEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASIC 146 (263)
T ss_dssp --HHHHHHHHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchh
Confidence 345555543 799999999975421 1 234567899999999988764 23457899999988
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcCh-----hHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNL-----VDL 530 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~-----~d~ 530 (958)
.+... .....|+.||...|.+.+..+ ..|++++++|||.|+++........ ...
T Consensus 147 ~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~ 209 (263)
T 3ai3_A 147 AVQPL-----------------WYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGD 209 (263)
T ss_dssp GTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCC
T ss_pred hcCCC-----------------CCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCc
Confidence 76421 112479999999999887643 3599999999999988642110000 000
Q ss_pred HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCCC
Q psy4557 531 NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPIH 586 (958)
Q Consensus 531 ~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~~ 586 (958)
...........+ .|. ..+..++++|++++.++.... ..+.+|++.....++
T Consensus 210 ~~~~~~~~~~~~-~p~----~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 210 WKGYLQSVADEH-API----KRFASPEELANFFVFLCSERATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp HHHHHHHHHHHH-CTT----CSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTCCCC
T ss_pred HHHHHHHHHhcC-CCC----CCCcCHHHHHHHHHHHcCccccCCCCcEEEECCCcccc
Confidence 001111111110 231 246889999999999886532 247889988765443
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=178.20 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=101.1
Q ss_pred cHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 14 ALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQ-GCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 14 ~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
++.++|+++++++|+++|+++ +++++||+||+++++++|++|++. |+++|++|+++++|++++++++|||+++|+++|
T Consensus 2 ~l~~~l~~~a~~~p~~~Al~~-~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 2 KLLHAIQTHAETYPQTDAFRS-QGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CHHHHHHHHHHHSTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred cHHHHHHHHHHHCCCCeEEEc-CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 478999999999999999987 568999999999999999999885 899999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
|+|+.++.+|+.+++++++++++|+++..
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~ 109 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGL 109 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSC
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccc
Confidence 99999999999999999999999997654
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.1e-16 Score=165.87 Aligned_cols=187 Identities=17% Similarity=0.112 Sum_probs=133.0
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
+++||||+|+||++++++|+ +|++|++++|+.+. . .+ +.+|+++.+++.++++.+ ++|+|
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~--------~--~~----~~~Dl~~~~~~~~~~~~~-----~~d~v 61 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEI--------Q--GG----YKLDLTDFPRLEDFIIKK-----RPDVI 61 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCC--------T--TC----EECCTTSHHHHHHHHHHH-----CCSEE
T ss_pred EEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcC--------C--CC----ceeccCCHHHHHHHHHhc-----CCCEE
Confidence 58999999999999999999 59999999998642 0 12 789999999998888765 69999
Q ss_pred EEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC----------CChhhh
Q psy4557 798 VNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA----------GLAVYT 867 (958)
Q Consensus 798 InnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~----------~~~~Y~ 867 (958)
|||||..... .+.++++..+++|+.|+..+++++.+ . +++||++||.++..+.+ ....|+
T Consensus 62 i~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~--~~~iv~~SS~~~~~~~~~~~~e~~~~~~~~~Y~ 131 (273)
T 2ggs_A 62 INAAAMTDVD----KCEIEKEKAYKINAEAVRHIVRAGKV----I--DSYIVHISTDYVFDGEKGNYKEEDIPNPINYYG 131 (273)
T ss_dssp EECCCCCCHH----HHHHCHHHHHHHHTHHHHHHHHHHHH----T--TCEEEEEEEGGGSCSSSCSBCTTSCCCCSSHHH
T ss_pred EECCcccChh----hhhhCHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEecceeEcCCCCCcCCCCCCCCCCHHH
Confidence 9999975421 23467899999999999999998853 2 25999999998764433 256899
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhh--hccc-cCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDK--YDIS-KAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~--~~~~-~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.+|++.+.+++. +....+|++.|. | .+++..... ...... .... ....++.++|+|+++++++..+.
T Consensus 132 ~sK~~~e~~~~~----~~~~~iR~~~v~-G--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dva~~i~~~~~~~~ 201 (273)
T 2ggs_A 132 LSKLLGETFALQ----DDSLIIRTSGIF-R--NKGFPIYVY-KTLKEGKTVFAFKGYYSPISARKLASAILELLELRK 201 (273)
T ss_dssp HHHHHHHHHHCC----TTCEEEEECCCB-S--SSSHHHHHH-HHHHTTCCEEEESCEECCCBHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC----CCeEEEeccccc-c--ccHHHHHHH-HHHHcCCCEEeecCCCCceEHHHHHHHHHHHHhcCc
Confidence 999999999887 333345555544 3 222210000 000000 0000 02356889999999999887654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-15 Score=157.65 Aligned_cols=217 Identities=15% Similarity=0.142 Sum_probs=145.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccC-CChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRE-TPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~-~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
++++||||||+||||++++++|+++ +.+|+++.|. .... +.+.+.+.. ...++.++.+|++.
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~---~~~~~~~~~---------~~~~~~~~~~D~~~---- 68 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARA-GAKVGLHGRKAPANI---DETIASMRA---------DGGDAAFFAADLAT---- 68 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCCTTH---HHHHHHHHH---------TTCEEEEEECCTTS----
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEECCCchhhH---HHHHHHHHh---------cCCceEEEECCCCC----
Confidence 4568999999999999999999986 4789999886 3321 222222211 12478889999874
Q ss_pred CCcHHHHHHHhc-------ccCEEEEcccccCccc-----C---hHHHHhhhHHHHHHHHHhhcc----CC--C---ccE
Q psy4557 397 LKNQDEYVSLSY-------EIDMIIHAAAFVNLIL-----P---YNALYKSNVLATKNLIEFSFL----NK--I---KSF 452 (958)
Q Consensus 397 L~~~~~~~~l~~-------~vd~IiH~AA~v~~~~-----~---~~~~~~~NV~gt~~ll~~a~~----~~--~---k~~ 452 (958)
.+....+.+ .+|+|||+|+...... + ++....+|+.|+.++++.+.. .+ . .++
T Consensus 69 ---~~~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~i 145 (258)
T 3afn_B 69 ---SEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAV 145 (258)
T ss_dssp ---HHHHHHHHHHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred ---HHHHHHHHHHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEE
Confidence 345555544 7999999999622111 1 345678999999999886532 11 1 578
Q ss_pred EEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChh
Q psy4557 453 HYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLV 528 (958)
Q Consensus 453 ~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~ 528 (958)
+++||...+... ..+...|+.||+..|.+++... ..|++++++|||.++++..... ..
T Consensus 146 v~~sS~~~~~~~----------------~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~ 207 (258)
T 3afn_B 146 ISTGSIAGHTGG----------------GPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK--TQ 207 (258)
T ss_dssp EEECCTHHHHCC----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC--CH
T ss_pred EEecchhhccCC----------------CCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc--CH
Confidence 899887654310 0123479999999999987633 3499999999999998754321 11
Q ss_pred HHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc---CCCCceEEecCC
Q psy4557 529 DLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV---NNANKIYNFINT 582 (958)
Q Consensus 529 d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~---~~~~~v~h~~n~ 582 (958)
++ .+... ...| ...+.+++++|++++.++... ...+++|++...
T Consensus 208 ~~----~~~~~--~~~~----~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg 254 (258)
T 3afn_B 208 DV----RDRIS--NGIP----MGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGG 254 (258)
T ss_dssp HH----HHHHH--TTCT----TCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTT
T ss_pred HH----HHHHh--ccCC----CCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCC
Confidence 21 11111 1123 235789999999999887643 235789998764
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-14 Score=152.81 Aligned_cols=222 Identities=14% Similarity=0.074 Sum_probs=148.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|++++ .+|+++.|... ..+.+.+.+.. ...++.++.+|++.
T Consensus 13 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~---~~~~~~~~l~~---------~~~~~~~~~~D~~~----- 74 (260)
T 2zat_A 13 ENKVALVTASTDGIGLAIARRLAQDG-AHVVVSSRKQE---NVDRTVATLQG---------EGLSVTGTVCHVGK----- 74 (260)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHHHH---------TTCCEEEEECCTTC-----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHH---HHHHHHHHHHh---------cCCceEEEEccCCC-----
Confidence 46789999999999999999999874 68888888532 11222222211 12467888999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCccc-----C---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLIL-----P---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~~-----~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
.+....+.+ .+|++||||+...... + ++...++|+.|+.++++.+. +.+..+|+++||.
T Consensus 75 --~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~ 152 (260)
T 2zat_A 75 --AEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSV 152 (260)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCG
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEech
Confidence 344444433 7999999999653211 1 34567899999999888764 3455799999998
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.+... .....|+.||...|.+.+..+ ..|+++++++||.+.++.....+........
T Consensus 153 ~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~- 214 (260)
T 2zat_A 153 GAYHPF-----------------PNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEY- 214 (260)
T ss_dssp GGTSCC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHH-
T ss_pred hhcCCC-----------------CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHH-
Confidence 876421 123479999999999987643 3599999999999987642111111111111
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCCC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPIH 586 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~~ 586 (958)
+.. ..|. ..+..++++|++++.++.... -.+.++++......+
T Consensus 215 ~~~-----~~~~----~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 215 MKE-----SLRI----RRLGNPEDCAGIVSFLCSEDASYITGETVVVGGGTASR 259 (260)
T ss_dssp HHH-----HHTC----SSCBCGGGGHHHHHHHTSGGGTTCCSCEEEESTTCCCC
T ss_pred HHh-----cCCC----CCCCCHHHHHHHHHHHcCcccCCccCCEEEECCCcccc
Confidence 111 1121 236788999999999886543 257899998766554
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.9e-15 Score=163.51 Aligned_cols=207 Identities=14% Similarity=0.090 Sum_probs=142.1
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+.+.+++|+++||||+|+||++++++|+++|++|++++|+.....+....+. ...++.++.+|+++..
T Consensus 21 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~----------- 88 (343)
T 2b69_A 21 GHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWI-GHENFELINHDVVEPL----------- 88 (343)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGT-TCTTEEEEECCTTSCC-----------
T ss_pred cccccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhc-cCCceEEEeCccCChh-----------
Confidence 3355788999999999999999999999999999999987432211111111 1245788899998752
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----------
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR----------- 858 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~----------- 858 (958)
+.++|+||||||....... .++++..+++|+.|+..+++++... + .++|++||.+..-
T Consensus 89 -~~~~d~vih~A~~~~~~~~----~~~~~~~~~~n~~~~~~l~~a~~~~-----~-~~~v~~SS~~v~g~~~~~~~~E~~ 157 (343)
T 2b69_A 89 -YIEVDQIYHLASPASPPNY----MYNPIKTLKTNTIGTLNMLGLAKRV-----G-ARLLLASTSEVYGDPEVHPQSEDY 157 (343)
T ss_dssp -CCCCSEEEECCSCCSHHHH----TTCHHHHHHHHHHHHHHHHHHHHHH-----T-CEEEEEEEGGGGBSCSSSSBCTTC
T ss_pred -hcCCCEEEECccccCchhh----hhCHHHHHHHHHHHHHHHHHHHHHh-----C-CcEEEECcHHHhCCCCCCCCcccc
Confidence 5679999999997543211 1235688999999999999887542 2 4999999976431
Q ss_pred -----CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh---hhhhhh----c--cc----c
Q psy4557 859 -----PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR---DVVDKY----D--IS----K 920 (958)
Q Consensus 859 -----~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~---~~~~~~----~--~~----~ 920 (958)
+......|+.+|++.+.+++.++.+. |++++++.||.+..+........ ...... . .. .
T Consensus 158 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 2b69_A 158 WGHVNPIGPRACYDEGKRVAETMCYAYMKQE---GVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQ 234 (343)
T ss_dssp CCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCC
T ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCe
Confidence 22345679999999999999988775 89999999999988754321110 111110 0 00 0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCC
Q psy4557 921 AVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 921 ~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
...++.++|+|++++.++..+.
T Consensus 235 ~~~~v~v~Dva~a~~~~~~~~~ 256 (343)
T 2b69_A 235 TRAFQYVSDLVNGLVALMNSNV 256 (343)
T ss_dssp EEECEEHHHHHHHHHHHHTSSC
T ss_pred EEeeEeHHHHHHHHHHHHhcCC
Confidence 1235688999999999876553
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-15 Score=163.97 Aligned_cols=201 Identities=16% Similarity=0.126 Sum_probs=146.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHc--CCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTL--GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~--Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+|+++||||+|+||.+++++|+++ |++|++++|+....+ +. . .+.++.+|+++.+++.+++++. +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~~---~----~~~~~~~D~~d~~~~~~~~~~~-----~ 68 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-VV---N----SGPFEVVNALDFNQIEHLVEVH-----K 68 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-HH---H----SSCEEECCTTCHHHHHHHHHHT-----T
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-cc---C----CCceEEecCCCHHHHHHHHhhc-----C
Confidence 478999999999999999999999 899999999865422 11 1 2447789999999888777643 6
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC------------C
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF------------A 861 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~------------~ 861 (958)
+|++|||||..... ..++++..+++|+.|+..+++++.+ .+.+++|++||.+..-.. .
T Consensus 69 ~d~vih~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~ 138 (312)
T 2yy7_A 69 ITDIYLMAALLSAT-----AEKNPAFAWDLNMNSLFHVLNLAKA-----KKIKKIFWPSSIAVFGPTTPKENTPQYTIME 138 (312)
T ss_dssp CCEEEECCCCCHHH-----HHHCHHHHHHHHHHHHHHHHHHHHT-----TSCSEEECCEEGGGCCTTSCSSSBCSSCBCC
T ss_pred CCEEEECCccCCCc-----hhhChHHHHHHHHHHHHHHHHHHHH-----cCCCEEEEeccHHHhCCCCCCCCccccCcCC
Confidence 89999999975321 2355788999999999998887643 234699999998754321 2
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC--hhh----hhhh---cc--c----cCCCCCC
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD--RDV----VDKY---DI--S----KAVPVLT 926 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~--~~~----~~~~---~~--~----~~~~~~~ 926 (958)
....|+.+|++.+.+++.++.++ |++++++.||.+..+....... ... .... .. . ....++.
T Consensus 139 ~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 215 (312)
T 2yy7_A 139 PSTVYGISKQAGERWCEYYHNIY---GVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMY 215 (312)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHH---CCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEE
T ss_pred CCchhHHHHHHHHHHHHHHHHhc---CCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeee
Confidence 25679999999999999998775 7999999999998754321110 000 0100 00 0 0112456
Q ss_pred HHHHHHHHHHHhcCCC
Q psy4557 927 TKEISQSIIFALLQPS 942 (958)
Q Consensus 927 p~~ia~~i~~~l~~~~ 942 (958)
.+|+|++++.++..+.
T Consensus 216 v~Dva~a~~~~~~~~~ 231 (312)
T 2yy7_A 216 MDDAIDATINIMKAPV 231 (312)
T ss_dssp HHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHhCcc
Confidence 7999999999887654
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=162.84 Aligned_cols=200 Identities=11% Similarity=0.087 Sum_probs=143.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHHc-CCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCH-HHHHHHHHHHHHHcCCc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTL-GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIE-NDVKKVVREVLAELGHI 794 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~-Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~-~~v~~~~~~~~~~~g~i 794 (958)
++++||||+|+||++++++|+++ |++|++++|+.++.+++. ....+.++.+|+++. +.+.++++ .+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~-------~~ 68 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-----NHPHFHFVEGDISIHSEWIEYHVK-------KC 68 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-----TCTTEEEEECCTTTCSHHHHHHHH-------HC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh-----cCCCeEEEeccccCcHHHHHhhcc-------CC
Confidence 46999999999999999999998 899999999876554321 124578889999984 45655543 47
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC-------------
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA------------- 861 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~------------- 861 (958)
|++|||||...... ..++++.++++|+.|+..+++++.. . + ++||++||.+..-..+
T Consensus 69 d~vih~A~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~-~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~~ 138 (345)
T 2bll_A 69 DVVLPLVAIATPIE----YTRNPLRVFELDFEENLRIIRYCVK----Y-R-KRIIFPSTSEVYGMCSDKYFDEDHSNLIV 138 (345)
T ss_dssp SEEEECBCCCCHHH----HHHSHHHHHHHHTHHHHHHHHHHHH----T-T-CEEEEECCGGGGBTCCCSSBCTTTCCCBC
T ss_pred CEEEEcccccCccc----hhcCHHHHHHHHHHHHHHHHHHHHH----h-C-CeEEEEecHHHcCCCCCCCcCCccccccc
Confidence 99999999754221 1245678999999999988887643 2 3 7999999976532111
Q ss_pred -----CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC------C---hhhhhhh------ccc--
Q psy4557 862 -----GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST------D---RDVVDKY------DIS-- 919 (958)
Q Consensus 862 -----~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~------~---~~~~~~~------~~~-- 919 (958)
....|+.+|++.+.+++.++.+. |++++++.||.+..+...... . ....... ...
T Consensus 139 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (345)
T 2bll_A 139 GPVNKPRWIYSVSKQLLDRVIWAYGEKE---GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDG 215 (345)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGG
T ss_pred CcccCcccccHHHHHHHHHHHHHHHHhc---CCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECC
Confidence 12379999999999999998775 799999999999877542210 0 0000000 000
Q ss_pred --cCCCCCCHHHHHHHHHHHhcCC
Q psy4557 920 --KAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 920 --~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
....++.++|+|+++++++..+
T Consensus 216 g~~~~~~i~v~Dva~a~~~~~~~~ 239 (345)
T 2bll_A 216 GKQKRCFTDIRDGIEALYRIIENA 239 (345)
T ss_dssp SCCEEECEEHHHHHHHHHHHHHCG
T ss_pred CCEEEEEEEHHHHHHHHHHHHhhc
Confidence 1113578999999999988765
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-15 Score=181.11 Aligned_cols=116 Identities=19% Similarity=0.277 Sum_probs=105.8
Q ss_pred ccccHHHHHHHHHHhCCCCeEEEeCC---CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHH
Q psy4557 11 AEGALHYMFRNQAKRTPDKIAVVDHD---GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (958)
Q Consensus 11 ~~~~l~~~~~~~a~~~pd~~Al~~~~---~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~ 87 (958)
...++.++|.++++++||++|+++.+ ++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 34679999999999999999997532 468999999999999999999999999999999999999999999999999
Q ss_pred CCeEecCCCCC---CHHHHHHHHhhcCCeEEEEcccchhhhh
Q psy4557 88 GGGYLPLETSY---PPALLESVLDDAKPSIVITKGEYMDRLE 126 (958)
Q Consensus 88 G~v~vPln~~~---~~~~l~~il~~~~~~~vi~~~~~~~~~~ 126 (958)
|+++|||||.+ +.+++.+++++++++++|++.+..+.+.
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 99999999999 4589999999999999999887665543
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=153.06 Aligned_cols=220 Identities=12% Similarity=0.048 Sum_probs=146.0
Q ss_pred ccCceEEeccc--cchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 318 KYGNVLLTGVT--GYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 318 ~~~~VllTGaT--GflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
++++||||||+ |+||.+++++|+++ +.+|+++.|.... .+.+.+..... .++.++.+|++.
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~~~---~~~~~~l~~~~----------~~~~~~~~D~~~--- 69 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEA-GAEVALSYQAERL---RPEAEKLAEAL----------GGALLFRADVTQ--- 69 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHH-TCEEEEEESCGGG---HHHHHHHHHHT----------TCCEEEECCTTC---
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEcCCHHH---HHHHHHHHHhc----------CCcEEEECCCCC---
Confidence 45789999999 99999999999987 4788888886431 12222221111 236788899874
Q ss_pred CCCcHHHHHHHhc-------ccCEEEEcccccCc--------cc---ChHHHHhhhHHHHHHHHHhhccCC--CccEEEE
Q psy4557 396 GLKNQDEYVSLSY-------EIDMIIHAAAFVNL--------IL---PYNALYKSNVLATKNLIEFSFLNK--IKSFHYV 455 (958)
Q Consensus 396 GL~~~~~~~~l~~-------~vd~IiH~AA~v~~--------~~---~~~~~~~~NV~gt~~ll~~a~~~~--~k~~~~v 455 (958)
.+....+.+ .+|++||||+.... .. .++....+|+.|+.++++.+...- ..+++++
T Consensus 70 ----~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 145 (261)
T 2wyu_A 70 ----DEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTL 145 (261)
T ss_dssp ----HHHHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 344444433 78999999997542 11 234567899999999999886541 2489999
Q ss_pred ecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHH
Q psy4557 456 STDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLN 531 (958)
Q Consensus 456 ST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~ 531 (958)
||.+.+... .....|+.||...|.+.+..+ .+|++++++|||.|.++...+.....++.
T Consensus 146 sS~~~~~~~-----------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~ 208 (261)
T 2wyu_A 146 TYYASEKVV-----------------PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMY 208 (261)
T ss_dssp ECGGGTSBC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHH
T ss_pred ecccccCCC-----------------CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHH
Confidence 997654211 112469999999999887633 34999999999999887532221212211
Q ss_pred HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCC
Q psy4557 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPI 585 (958)
Q Consensus 532 ~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~ 585 (958)
+.... ..|- ..+..++++|++++.++.... -.+.+|++.....+
T Consensus 209 ----~~~~~--~~p~----~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~ 254 (261)
T 2wyu_A 209 ----DRVAQ--TAPL----RRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHI 254 (261)
T ss_dssp ----HHHHH--HSTT----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ----HHHHh--cCCC----CCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCccc
Confidence 11111 1231 135678999999999885432 24788998765433
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-14 Score=153.01 Aligned_cols=220 Identities=14% Similarity=0.096 Sum_probs=144.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||||+||.+++++|+++ +.+|+++.|... ...+.+.+.+.. ...++.++.+|++.
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~~~--~~~~~~~~~l~~---------~~~~~~~~~~D~~~----- 68 (261)
T 1gee_A 6 EGKVVVITGSSTGLGKSMAIRFATE-KAKVVVNYRSKE--DEANSVLEEIKK---------VGGEAIAVKGDVTV----- 68 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCH--HHHHHHHHHHHH---------TTCEEEEEECCTTS-----
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEcCCCh--HHHHHHHHHHHh---------cCCceEEEECCCCC-----
Confidence 4578999999999999999999987 478888888321 112222222221 12467889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc----CC-CccEEEEecc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL----NK-IKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~----~~-~k~~~~vST~ 458 (958)
.+....+.+ .+|+|||||+..... ..++....+|+.|+.++++.+.. .+ ..+|+++||.
T Consensus 69 --~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~ 146 (261)
T 1gee_A 69 --ESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSV 146 (261)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCG
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCH
Confidence 344444443 789999999975431 12345678999999998876543 23 4689999997
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
..+.+. .+...|+.||...|.+++... ..|++++++|||.++++......... ..
T Consensus 147 ~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~----~~ 205 (261)
T 1gee_A 147 HEKIPW-----------------PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADP----EQ 205 (261)
T ss_dssp GGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSH----HH
T ss_pred HhcCCC-----------------CCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccCh----hH
Confidence 654210 123579999999998886532 35999999999999887421100001 11
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTN 583 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~ 583 (958)
.... ....|. ..+..++++|++++.++... ...+.++++....
T Consensus 206 ~~~~--~~~~~~----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 250 (261)
T 1gee_A 206 RADV--ESMIPM----GYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM 250 (261)
T ss_dssp HHHH--HTTCTT----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHH--HhcCCC----CCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCCc
Confidence 1111 112231 24688999999999987643 2357788887643
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=155.42 Aligned_cols=217 Identities=13% Similarity=0.103 Sum_probs=144.5
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++|||||||||||.+++++|+++ +.+|+++.|... ..+.+.+.+... ...++.++.+|++.
T Consensus 6 ~~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~---~~~~~~~~~~~~--------~~~~~~~~~~D~~~----- 68 (248)
T 2pnf_A 6 QGKVSLVTGSTRGIGRAIAEKLASA-GSTVIITGTSGE---RAKAVAEEIANK--------YGVKAHGVEMNLLS----- 68 (248)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSHH---HHHHHHHHHHHH--------HCCCEEEEECCTTC-----
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCChH---HHHHHHHHHHhh--------cCCceEEEEccCCC-----
Confidence 4578999999999999999999986 468998888532 122222222110 12468889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
.+....+.+ .+|+|||+|+..... ..+....++|+.|+.++++.+. +.+.++|+++||.+
T Consensus 69 --~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 146 (248)
T 2pnf_A 69 --EESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVV 146 (248)
T ss_dssp --HHHHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHH
T ss_pred --HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHH
Confidence 355555543 799999999976431 1234567899999977776543 34557999999975
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...|.+++..+ ..|++++++|||.+.++.... .. .. +.
T Consensus 147 ~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~-~~-~~----~~ 203 (248)
T 2pnf_A 147 GFTGN-----------------VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAV-LS-EE----IK 203 (248)
T ss_dssp HHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG-SC-HH----HH
T ss_pred hcCCC-----------------CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhh-cc-HH----HH
Confidence 43211 112469999999999887643 358999999999998875321 11 11 11
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
... . ...|. ..+.+++++|++++.++... ...+++|++...
T Consensus 204 ~~~-~-~~~~~----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 204 QKY-K-EQIPL----GRFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp HHH-H-HTCTT----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHH-H-hcCCC----CCccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 111 1 11231 24788999999999987643 234788988753
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=158.77 Aligned_cols=243 Identities=16% Similarity=0.131 Sum_probs=148.8
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCC--hhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETP--NKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~--~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
+++||||||+|+||.+++++|+++ +.+|++.+|... .....+.+.+.+.. ...++.++.+|++.
T Consensus 5 ~k~vlVTGas~GIG~aia~~L~~~-G~~V~~~~r~~~~r~~~~~~~l~~~~~~---------~~~~~~~~~~Dvtd---- 70 (324)
T 3u9l_A 5 KKIILITGASSGFGRLTAEALAGA-GHRVYASMRDIVGRNASNVEAIAGFARD---------NDVDLRTLELDVQS---- 70 (324)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCTTTTTHHHHHHHHHHHHH---------HTCCEEEEECCTTC----
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEecCcccccCHHHHHHHHHHHHh---------cCCcEEEEEeecCC----
Confidence 468999999999999999999976 478988888532 22222333333222 13578899999874
Q ss_pred CCcHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEecc
Q psy4557 397 LKNQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTD 458 (958)
Q Consensus 397 L~~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~ 458 (958)
.+....+.+ .+|++||||+..... ..+....++|+.|+.++++.+ ++.+..+++++||.
T Consensus 71 ---~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~ 147 (324)
T 3u9l_A 71 ---QVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSS 147 (324)
T ss_dssp ---HHHHHHHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred ---HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 355555543 899999999965321 123456789999999999887 44455789999998
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCC--cChhHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKN--WNLVDLNL 532 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~--~n~~d~~~ 532 (958)
+.+.... .....|+.||+..|.+.+..+ ..|+++++++||.+.++..... ....+..
T Consensus 148 ~~~~~~~----------------~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~- 210 (324)
T 3u9l_A 148 SSAGGTP----------------PYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHA- 210 (324)
T ss_dssp GGTSCCC----------------SSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHH-
T ss_pred hhccCCC----------------CcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHH-
Confidence 7653110 112469999999999987643 3599999999999976543211 0111110
Q ss_pred HHHHHHHHhCCc--CC-CCC-----cCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 533 YILKAITRLGYA--PD-IDW-----YLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 533 ~l~~~~~~~g~~--P~-~~~-----~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
. .......+.. |+ ... .-+...++++|++|+.+...+......+-+..|....+..+.+.++.
T Consensus 211 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~vA~aiv~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~ 281 (324)
T 3u9l_A 211 R-QAEYEAGPNAGLGEEIKKAFAAIVPPDADVSLVADAIVRVVGTASGKRPFRVHVDPAEDGADVGFSVLDR 281 (324)
T ss_dssp H-HHHHHHTTTTTHHHHHHHHHHHTSCTTCCTHHHHHHHHHHHTSCTTCCCSEEEECTTCCSHHHHHHHHHH
T ss_pred H-HHhhccccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeCCcchHHHHHHHHHHH
Confidence 0 0011111100 00 000 01125789999999999876643233333445666676666555543
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=154.90 Aligned_cols=224 Identities=14% Similarity=0.089 Sum_probs=146.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||+|+||.+++++|++++ .+|+++.|...... +.+.+.... ...++.++.+|++.
T Consensus 13 ~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~--~~~~~l~~~---------~~~~~~~~~~Dl~~----- 75 (265)
T 1h5q_A 13 VNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAV--EVTEKVGKE---------FGVKTKAYQCDVSN----- 75 (265)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTHH--HHHHHHHHH---------HTCCEEEEECCTTC-----
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCcchhhH--HHHHHHHHh---------cCCeeEEEEeeCCC-----
Confidence 45789999999999999999999864 68999988543221 112111111 13578889999874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc-----CCCccEEEEecc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL-----NKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~-----~~~k~~~~vST~ 458 (958)
.+....+. ..+|+|||+|+..... ..++....+|+.|+.++++.+.. ....+|+|+||.
T Consensus 76 --~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~ 153 (265)
T 1h5q_A 76 --TDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSM 153 (265)
T ss_dssp --HHHHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred --HHHHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCc
Confidence 34444443 2589999999975431 12344678999999999987753 223689999998
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.+...... . .+..+...|+.||+..|.+++..+ ..|++++++|||.+.++..... . .+..
T Consensus 154 ~~~~~~~~~---~-------~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~-~~~~--- 218 (265)
T 1h5q_A 154 SSQIINQSS---L-------NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM-D-KKIR--- 218 (265)
T ss_dssp GGTSCCEEE---T-------TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS-C-HHHH---
T ss_pred hhhcccccc---c-------cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc-c-hhHH---
Confidence 765321100 0 001234579999999999987643 3599999999999988753221 1 1111
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.... ...|. ..+..++++|++++.++.... ..+.+|++...
T Consensus 219 -~~~~--~~~~~----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 261 (265)
T 1h5q_A 219 -DHQA--SNIPL----NRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG 261 (265)
T ss_dssp -HHHH--HTCTT----SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred -HHHH--hcCcc----cCCCCHHHHHHHHHhhccCchhcCcCcEEEecCC
Confidence 1111 11231 236788999999999876532 35788888764
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=152.94 Aligned_cols=207 Identities=13% Similarity=0.086 Sum_probs=145.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|+++ +.+|+++.|..... ...++.++.+|++.
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~---------------------~~~~~~~~~~Dv~d----- 79 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDR-NYRVVATSRSIKPS---------------------ADPDIHTVAGDISK----- 79 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSCCCC---------------------SSTTEEEEESCTTS-----
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChhhc---------------------ccCceEEEEccCCC-----
Confidence 4578999999999999999999977 46888888854321 12368889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~ 459 (958)
.+....+.+ .+|++||||+..... ..++...++|+.|+.++++.+ .+.+..+++++||.+
T Consensus 80 --~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~ 157 (260)
T 3un1_A 80 --PETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSL 157 (260)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred --HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechh
Confidence 345555543 799999999975321 123456779999999999876 345557899999977
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+.... ..+...|+.||...|.+.+..+ ..|+++.+++||.|.++.... +....
T Consensus 158 ~~~~~~---------------~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~-----~~~~~-- 215 (260)
T 3un1_A 158 VDQPMV---------------GMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPA-----ETHST-- 215 (260)
T ss_dssp TTSCBT---------------TCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCG-----GGHHH--
T ss_pred hccCCC---------------CCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCH-----HHHHH--
Confidence 643210 0123579999999999987643 348999999999998875321 11111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTN 583 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~ 583 (958)
..+..| ...+..++++|++++.+.......|+++++....
T Consensus 216 ----~~~~~p----~~r~~~~~dva~av~~L~~~~~itG~~i~vdGG~ 255 (260)
T 3un1_A 216 ----LAGLHP----VGRMGEIRDVVDAVLYLEHAGFITGEILHVDGGQ 255 (260)
T ss_dssp ----HHTTST----TSSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTG
T ss_pred ----HhccCC----CCCCcCHHHHHHHHHHhcccCCCCCcEEEECCCe
Confidence 112223 2346779999999999855444568899987653
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=155.02 Aligned_cols=214 Identities=13% Similarity=0.041 Sum_probs=139.5
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+++||||||+||||.+++++|+++.+.+|+++.|.... .+.+.+.+.. ...++.++.+|++.
T Consensus 4 ~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~---~~~~~~~l~~---------~~~~~~~~~~Dl~~------ 65 (276)
T 1wma_A 4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR---GQAAVQQLQA---------EGLSPRFHQLDIDD------ 65 (276)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH---HHHHHHHHHH---------TTCCCEEEECCTTC------
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHH---HHHHHHHHHh---------cCCeeEEEECCCCC------
Confidence 56899999999999999999998335689988885321 1222222211 12478889999874
Q ss_pred cHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccCC--CccEEEEecccccC
Q psy4557 399 NQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLNK--IKSFHYVSTDSIYP 462 (958)
Q Consensus 399 ~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~~--~k~~~~vST~~v~~ 462 (958)
.+....+.. .+|+|||||+..... ..++....+|+.|+.++++.+.... ..+|+|+||...+.
T Consensus 66 -~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~ 144 (276)
T 1wma_A 66 -LQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVR 144 (276)
T ss_dssp -HHHHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhc
Confidence 344554443 799999999975321 2234567899999999999887542 24899999987652
Q ss_pred CC-C-----------CCCcccccc------------cCcCCCCCCCCChhHHHHHHHHHHHHHh----h----CCCCEEE
Q psy4557 463 ST-S-----------ENFQEDYTV------------ADFDDFMTTTSGYGQSKIVSEYLVLNAG----Q----MGLPVSI 510 (958)
Q Consensus 463 ~~-~-----------~~~~e~~~~------------~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~----~glp~~I 510 (958)
.. . ..+.|+... ........+...|+.||...|.+++..+ . .|+++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~ 224 (276)
T 1wma_A 145 ALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNA 224 (276)
T ss_dssp HHHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEE
T ss_pred ccccCChhHHhhccccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEE
Confidence 10 0 011111000 0000011233689999999999887532 2 5999999
Q ss_pred EecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC----CCCceEE
Q psy4557 511 VRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN----NANKIYN 578 (958)
Q Consensus 511 ~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~----~~~~v~h 578 (958)
++||.|.++...+ ..+..++.+|++++.++..+. ..|..++
T Consensus 225 v~PG~v~t~~~~~---------------------------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~~ 269 (276)
T 1wma_A 225 CCPGWVRTDMAGP---------------------------KATKSPEEGAETPVYLALLPPDAEGPHGQFVS 269 (276)
T ss_dssp EECCSBCSTTTCT---------------------------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEEE
T ss_pred ecCCccccCcCCc---------------------------cccCChhHhhhhHhhhhcCcccccccCceEec
Confidence 9999987653211 125788999999999886442 2455554
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-14 Score=152.19 Aligned_cols=217 Identities=12% Similarity=0.091 Sum_probs=143.1
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCce-EEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRL-ILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri-~~v~gDl~~~~lG 396 (958)
++++||||||||+||.+++++|+++ +.+|+++.|... ++.+..... ..++ .++.+|++.
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~-G~~V~~~~r~~~------~~~~~~~~~---------~~~~~~~~~~D~~~---- 69 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAAS-GARLILIDREAA------ALDRAAQEL---------GAAVAARIVADVTD---- 69 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHH------HHHHHHHHH---------GGGEEEEEECCTTC----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHH------HHHHHHHHh---------cccceeEEEEecCC----
Confidence 4578999999999999999999986 478999888532 122211111 1355 778899874
Q ss_pred CCcHHHHHHHh------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEeccc
Q psy4557 397 LKNQDEYVSLS------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDS 459 (958)
Q Consensus 397 L~~~~~~~~l~------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~ 459 (958)
.+....+. ..+|+|||+|+..... ..++....+|+.|+.++++.+ .+.+.++|+++||.+
T Consensus 70 ---~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~ 146 (254)
T 2wsb_A 70 ---AEAMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMS 146 (254)
T ss_dssp ---HHHHHHHHHHHHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred ---HHHHHHHHHHHHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecch
Confidence 34444443 4789999999975431 123456779999987777654 334557999999987
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+.... ..+...|+.||+..|.+++..+ ..|++++++|||.++++.........++ .
T Consensus 147 ~~~~~~---------------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~----~ 207 (254)
T 2wsb_A 147 GTIVNR---------------PQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPEL----F 207 (254)
T ss_dssp GTSCCS---------------SSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHH----H
T ss_pred hccCCC---------------CCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHH----H
Confidence 654210 0122579999999999987643 3499999999999988642110000111 1
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
..... ..|. ..+..++++|++++.++... ...+.++++...
T Consensus 208 ~~~~~--~~~~----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 250 (254)
T 2wsb_A 208 ETWLD--MTPM----GRCGEPSEIAAAALFLASPAASYVTGAILAVDGG 250 (254)
T ss_dssp HHHHH--TSTT----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHh--cCCC----CCCCCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 11111 1231 34688999999999987543 235778888653
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-14 Score=153.84 Aligned_cols=234 Identities=15% Similarity=0.078 Sum_probs=152.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|+++ +.+|++..|... ..+...+.+...+ ....++.++.+|++.
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~---~~~~~~~~l~~~~------~~~~~~~~~~~Dv~~----- 74 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAA-GASVMIVGRNPD---KLAGAVQELEALG------ANGGAIRYEPTDITN----- 74 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHH---HHHHHHHHHHTTC------CSSCEEEEEECCTTS-----
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHH---HHHHHHHHHHHhC------CCCceEEEEeCCCCC-----
Confidence 5678999999999999999999977 468888877532 1222222222111 112378899999874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCccc-----C---hHHHHhhhHHHHHHHHHhhcc----CCCccEEEEecc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLIL-----P---YNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~~-----~---~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~ 458 (958)
.++...+. ..+|++||||+...... + ++...++|+.|+.++++.+.. .+..+|+++||.
T Consensus 75 --~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~ 152 (281)
T 3svt_A 75 --EDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSI 152 (281)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCH
Confidence 34444443 36899999999733221 2 245677999999999987653 233589999998
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.+... .....|+.||...|.+.+..+ .+|+++..++||.|.++.........++...
T Consensus 153 ~~~~~~-----------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~- 214 (281)
T 3svt_A 153 AASNTH-----------------RWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSD- 214 (281)
T ss_dssp HHHSCC-----------------TTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHH-
T ss_pred HHcCCC-----------------CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHH-
Confidence 765321 123579999999999987632 4589999999999987642111111111111
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCCC-HHHHHHHHH
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPIH-IKTLVSVLN 595 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~~-~~~l~~~l~ 595 (958)
... ..|- ..+..++++|++++.++.... -.++++++.....++ ..++.+.+.
T Consensus 215 ---~~~--~~p~----~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~ 269 (281)
T 3svt_A 215 ---YAM--CTPL----PRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLE 269 (281)
T ss_dssp ---HHH--HCSS----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHH
T ss_pred ---HHh--cCCC----CCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccc
Confidence 111 1221 235678999999999886533 258899998766554 445555554
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-14 Score=151.96 Aligned_cols=208 Identities=15% Similarity=0.126 Sum_probs=140.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCC--CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTK--CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~--~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
+.++||||||+|+||.+++++|++++. .+|+++.|........+.+. . ...++.++.+|++.+
T Consensus 20 ~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~---~----------~~~~~~~~~~Dl~~~-- 84 (267)
T 1sny_A 20 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLA---K----------NHSNIHILEIDLRNF-- 84 (267)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHH---H----------HCTTEEEEECCTTCG--
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhh---c----------cCCceEEEEecCCCh--
Confidence 567899999999999999999998763 78999999765433222221 1 124788999999853
Q ss_pred CCCcHHHHHHHhc---------ccCEEEEcccccCc-----c---cChHHHHhhhHHHHHHHHHhhccC----------C
Q psy4557 396 GLKNQDEYVSLSY---------EIDMIIHAAAFVNL-----I---LPYNALYKSNVLATKNLIEFSFLN----------K 448 (958)
Q Consensus 396 GL~~~~~~~~l~~---------~vd~IiH~AA~v~~-----~---~~~~~~~~~NV~gt~~ll~~a~~~----------~ 448 (958)
+....+.+ .+|+|||||+.... . ..+.....+|+.|+.++++.+... +
T Consensus 85 -----~~v~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~ 159 (267)
T 1sny_A 85 -----DAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQ 159 (267)
T ss_dssp -----GGHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred -----HHHHHHHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccc
Confidence 33444433 79999999997651 1 223456789999999999877432 1
Q ss_pred -----CccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceecc
Q psy4557 449 -----IKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGS 519 (958)
Q Consensus 449 -----~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~ 519 (958)
..+|+++||...+..... ..+...|+.||...|.+++..+ ..|++++++|||.|..+
T Consensus 160 ~~~~~~~~iv~isS~~~~~~~~~--------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 225 (267)
T 1sny_A 160 PMGVGRAAIINMSSILGSIQGNT--------------DGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 225 (267)
T ss_dssp CSSTTTCEEEEECCGGGCSTTCC--------------SCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred cccCCCceEEEEecccccccCCC--------------CCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecC
Confidence 368999999877542210 0123479999999999987643 35999999999998654
Q ss_pred CCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCCCH
Q psy4557 520 LEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPIHI 587 (958)
Q Consensus 520 ~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~ 587 (958)
... . ..+...+.+|+.++.+.... ...+..+++ +...++|
T Consensus 226 ~~~----~-----------------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~-~g~~~~w 267 (267)
T 1sny_A 226 MGG----S-----------------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVNY-DGTPLAW 267 (267)
T ss_dssp TTC----T-----------------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEECT-TSCBCCC
T ss_pred CCC----C-----------------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEcc-CCcCcCC
Confidence 321 0 02356788899998877532 223444443 3344443
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.1e-14 Score=149.39 Aligned_cols=218 Identities=15% Similarity=0.111 Sum_probs=143.8
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+++||||||+|+||.+++++|+++ +.+|+++.|... ....+.+ .. ...++.++.+|++.
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~-~~~~~~l----~~---------~~~~~~~~~~D~~~------ 62 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARA-GANIVLNGFGDP-APALAEI----AR---------HGVKAVHHPADLSD------ 62 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHT-TCEEEEECSSCC-HHHHHHH----HT---------TSCCEEEECCCTTS------
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCch-HHHHHHH----Hh---------cCCceEEEeCCCCC------
Confidence 568999999999999999999986 468888888654 2111211 11 12467888999874
Q ss_pred cHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEecccc
Q psy4557 399 NQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~v 460 (958)
.+....+.+ .+|++||||+..... ..++....+|+.|+.++.+.+ .+.+..+++++||.+.
T Consensus 63 -~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 141 (255)
T 2q2v_A 63 -VAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHG 141 (255)
T ss_dssp -HHHHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred -HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchh
Confidence 355555554 799999999975421 123456789999877776554 4455679999999876
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH--
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI-- 534 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l-- 534 (958)
+... .....|+.||...+.+.+..+ ..|++++++|||.+.++..... .......
T Consensus 142 ~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~ 201 (255)
T 2q2v_A 142 LVGS-----------------TGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQ---IDDRAANGG 201 (255)
T ss_dssp TSCC-----------------TTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHH---HHHHHHHTC
T ss_pred ccCC-----------------CCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhh---ccccccccc
Confidence 5321 112479999999999887643 3589999999999987641100 0000000
Q ss_pred -H-HHHHH--hCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 535 -L-KAITR--LGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 535 -~-~~~~~--~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
. ..... ....| ...+..++++|++++.++.... ..+++|++...
T Consensus 202 ~~~~~~~~~~~~~~p----~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 251 (255)
T 2q2v_A 202 DPLQAQHDLLAEKQP----SLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGG 251 (255)
T ss_dssp CHHHHHHHHHTTTCT----TCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred chHHHHHHHHhccCC----CCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCC
Confidence 0 00011 11222 2357899999999999876532 24788888754
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=153.68 Aligned_cols=202 Identities=13% Similarity=0.110 Sum_probs=132.6
Q ss_pred cCceEEeccccchHHHHHHHHhcCCC-CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTK-CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++||||||+|+||.+++++|++++. .+|+++.|..... +.+.+ . ...++.++.+|++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~---~~l~~----~--------~~~~~~~~~~D~~~----- 62 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA---TELKS----I--------KDSRVHVLPLTVTC----- 62 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC---HHHHT----C--------CCTTEEEEECCTTC-----
T ss_pred CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHH---HHHHh----c--------cCCceEEEEeecCC-----
Confidence 46899999999999999999998754 7899998864322 12211 0 13578899999874
Q ss_pred CcHHHHHHHhc---------ccCEEEEcccccC-c----cc---ChHHHHhhhHHHHHHHHHhhccC----------C--
Q psy4557 398 KNQDEYVSLSY---------EIDMIIHAAAFVN-L----IL---PYNALYKSNVLATKNLIEFSFLN----------K-- 448 (958)
Q Consensus 398 ~~~~~~~~l~~---------~vd~IiH~AA~v~-~----~~---~~~~~~~~NV~gt~~ll~~a~~~----------~-- 448 (958)
.+....+.+ .+|+|||||+... . .. .++...++|+.|+.++++.+... +
T Consensus 63 --~~~~~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~ 140 (250)
T 1yo6_A 63 --DKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQL 140 (250)
T ss_dssp --HHHHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCC
T ss_pred --HHHHHHHHHHHHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcc
Confidence 244444443 7999999999765 1 11 23456789999999998876432 2
Q ss_pred ---CccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCC
Q psy4557 449 ---IKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLE 521 (958)
Q Consensus 449 ---~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~ 521 (958)
..+|+++||...+..... . .++..+...|+.||+..|.+++..+ ..|+.++++|||.|.++..
T Consensus 141 ~~~~~~iv~isS~~~~~~~~~---~-------~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 210 (250)
T 1yo6_A 141 SVSRAAVITISSGLGSITDNT---S-------GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG 210 (250)
T ss_dssp CTTTCEEEEECCGGGCSTTCC---S-------TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-----
T ss_pred cCCCcEEEEeccCccccCCcc---c-------ccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCC
Confidence 578999999876542210 0 0111234579999999999987643 3499999999999876531
Q ss_pred CCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEe
Q psy4557 522 FKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNF 579 (958)
Q Consensus 522 ~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~ 579 (958)
.. ..+++.+.+|+.++.+..... ..+..+++
T Consensus 211 ~~---------------------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~ 243 (250)
T 1yo6_A 211 GK---------------------------NAALTVEQSTAELISSFNKLDNSHNGRFFMR 243 (250)
T ss_dssp -----------------------------------HHHHHHHHHHHTTCCGGGTTCEEET
T ss_pred CC---------------------------CCCCCHHHHHHHHHHHHhcccccCCCeEEEE
Confidence 10 024678999999999886543 23455544
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-14 Score=151.34 Aligned_cols=223 Identities=15% Similarity=0.066 Sum_probs=146.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|++++ .+|+++.|... ..+.+.+.+.. ...++.++.+|++.
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~---~~~~~~~~~~~---------~~~~~~~~~~D~~~----- 69 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQK---ELNDCLTQWRS---------KGFKVEASVCDLSS----- 69 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHHHH---------TTCEEEEEECCTTC-----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHH---HHHHHHHHHHh---------cCCcEEEEEcCCCC-----
Confidence 45789999999999999999999864 68888888532 11222222211 12468889999874
Q ss_pred CcHHHHHHHh--------cccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 398 KNQDEYVSLS--------YEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~--------~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
.++...+. ..+|++||+|+..... . .++...++|+.|+.++++.+. +.+..+++++||.
T Consensus 70 --~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~ 147 (260)
T 2ae2_A 70 --RSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSV 147 (260)
T ss_dssp --HHHHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCG
T ss_pred --HHHHHHHHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcch
Confidence 34444443 5799999999975321 1 234567899999999998873 3455799999998
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.+... .....|+.||+..|.+.+..+ ..|+++++++||.+.++.........+... .
T Consensus 148 ~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~-~ 209 (260)
T 2ae2_A 148 SGALAV-----------------PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKE-N 209 (260)
T ss_dssp GGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHH-H
T ss_pred hhccCC-----------------CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHH-H
Confidence 764311 123479999999999987643 348999999999997653111011111111 0
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNP 584 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~ 584 (958)
+.... ...|. ..+..++++|++++.++.... ..++++++.....
T Consensus 210 ~~~~~--~~~~~----~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 255 (260)
T 2ae2_A 210 LNKLI--DRCAL----RRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGLM 255 (260)
T ss_dssp HHHHH--HTSTT----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHH--hcCCC----CCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 11111 11231 246789999999998875432 3578888876543
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-14 Score=164.94 Aligned_cols=168 Identities=14% Similarity=0.209 Sum_probs=126.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHc---CCeEEEEecChhhHHHHH---HHhhc------------CCCcEEEEEec
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTL---GAKVVAVARRIDRLENLK---TSLQN------------APGSIIVKKLD 773 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~---Ga~Vi~~~r~~~~l~~~~---~~l~~------------~~~~~~~~~~D 773 (958)
...++|+++||||+|+||.+++++|+++ |++|++++|+.+...... +.+.. ...++.++.+|
T Consensus 69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 148 (478)
T 4dqv_A 69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD 148 (478)
T ss_dssp CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence 3457899999999999999999999999 999999999876543222 11111 12478899999
Q ss_pred CC------CHHHHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcE
Q psy4557 774 VT------IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGH 847 (958)
Q Consensus 774 vs------~~~~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~ 847 (958)
++ +.+++.++++ ++|++|||||.... +.++..+++|+.|+..+++++.. .+.++
T Consensus 149 l~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~~--------~~~~~~~~~Nv~gt~~ll~aa~~-----~~~~~ 208 (478)
T 4dqv_A 149 KSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVNA--------FPYHELFGPNVAGTAELIRIALT-----TKLKP 208 (478)
T ss_dssp TTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCSB--------SSCCEEHHHHHHHHHHHHHHHTS-----SSCCC
T ss_pred CCCcccCCCHHHHHHHHc-------CCCEEEECccccCC--------cCHHHHHHHHHHHHHHHHHHHHh-----CCCCe
Confidence 98 4455555543 58999999998643 22457789999999988887632 23468
Q ss_pred EEEecCccCcCCCCC----------------------ChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCC
Q psy4557 848 ILNISSNAGVRPFAG----------------------LAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTE 902 (958)
Q Consensus 848 IV~isS~~g~~~~~~----------------------~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~ 902 (958)
+|++||.+....... ...|+.||++.+.+.+.++.+. |+++++|.||.|..+
T Consensus 209 ~V~iSS~~v~~~~~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ivRpg~v~G~ 282 (478)
T 4dqv_A 209 FTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLC---ALPVAVFRCGMILAD 282 (478)
T ss_dssp EEEEEEGGGGTTSCTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECC
T ss_pred EEEEeehhhcCccCCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHh---CCCeEEEECceeeCC
Confidence 999999754322111 1349999999999999988765 799999999999765
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-14 Score=150.23 Aligned_cols=215 Identities=12% Similarity=0.093 Sum_probs=136.5
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEe-ccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCP-VRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~cl-vR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
++++||||||+|+||.+++++|++++ .+|+++ .|.... .+.+.+.+.. ...++.++.+|++.
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G-~~V~~~~~r~~~~---~~~~~~~~~~---------~~~~~~~~~~D~~~---- 66 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMG-ANIVLNGSPASTS---LDATAEEFKA---------AGINVVVAKGDVKN---- 66 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECTTCSH---HHHHHHHHHH---------TTCCEEEEESCTTS----
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCcCHHH---HHHHHHHHHh---------cCCcEEEEECCCCC----
Confidence 34689999999999999999999874 688887 454332 1222222221 13578889999874
Q ss_pred CCcHHHHHHHhc-------ccCEEEEcccccCc-------ccChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEecc
Q psy4557 397 LKNQDEYVSLSY-------EIDMIIHAAAFVNL-------ILPYNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTD 458 (958)
Q Consensus 397 L~~~~~~~~l~~-------~vd~IiH~AA~v~~-------~~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~ 458 (958)
.+....+.+ .+|+|||||+.... ...++....+|+.|+.++++.+.. .+..+|+++||.
T Consensus 67 ---~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 143 (247)
T 2hq1_A 67 ---PEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSI 143 (247)
T ss_dssp ---HHHHHHHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ---HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCh
Confidence 344544443 79999999997542 123456778999999988877643 345799999997
Q ss_pred c-ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 459 S-IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 459 ~-v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
+ .++.. ....|+.||+..|.+++..+ ..|++++++|||.+.++.... .. ..
T Consensus 144 ~~~~~~~------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~-~~---- 199 (247)
T 2hq1_A 144 AGIIGNA------------------GQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV-LP-DK---- 199 (247)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-SC-HH----
T ss_pred hhccCCC------------------CCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh-cc-hH----
Confidence 4 33310 12479999999999887643 348999999999987653111 11 11
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.... .. ...| ...+..++++|++++.++.... ..+++|++...
T Consensus 200 ~~~~-~~-~~~~----~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 244 (247)
T 2hq1_A 200 VKEM-YL-NNIP----LKRFGTPEEVANVVGFLASDDSNYITGQVINIDGG 244 (247)
T ss_dssp HHHH-HH-TTST----TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHH-HH-hhCC----CCCCCCHHHHHHHHHHHcCcccccccCcEEEeCCC
Confidence 1111 11 1123 1246889999999998876432 35789998764
|
| >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-15 Score=131.89 Aligned_cols=77 Identities=30% Similarity=0.577 Sum_probs=72.5
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCCCCCchhhcCccHHHHHHHHHHHHHHhCCCCChHHHhcCCcHHHHHHHHhcc
Q psy4557 198 LDESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENK 274 (958)
Q Consensus 198 ~~~~~~~~e~~l~~iw~~vL~~~~i~~~~~FF~lGgdSL~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~la~~i~~~ 274 (958)
...|.+++|+.|.++|+++|+.+.+++++|||++|||||++++|+++|++.||+++++.++|++||+++||+++...
T Consensus 8 ~~~p~~~~e~~l~~i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~~Ti~~la~~i~~~ 84 (91)
T 1dny_A 8 YVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATR 84 (91)
T ss_dssp CCCCSSHHHHHHHHHHHHHHTCSSCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHh
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999753
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-14 Score=149.68 Aligned_cols=214 Identities=14% Similarity=0.129 Sum_probs=142.5
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEe-ccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCP-VRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~cl-vR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
++||||||||+||.+++++|++++ .+|+++ .|... ..+.+.+.+... ..++.++.+|++.
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G-~~v~~~~~r~~~---~~~~~~~~~~~~---------~~~~~~~~~D~~~------ 62 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAG-CKVLVNYARSAK---AAEEVSKQIEAY---------GGQAITFGGDVSK------ 62 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHH---HHHHHHHHHHHH---------TCEEEEEECCTTS------
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHH---HHHHHHHHHHhc---------CCcEEEEeCCCCC------
Confidence 579999999999999999999864 678774 56422 122222222211 2468888999874
Q ss_pred cHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEecccc
Q psy4557 399 NQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~v 460 (958)
.+....+.+ .+|+|||+|+..... ..++...++|+.|+.++++.+.. .+..+|+++||.+.
T Consensus 63 -~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~ 141 (244)
T 1edo_A 63 -EADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVG 141 (244)
T ss_dssp -HHHHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHH
T ss_pred -HHHHHHHHHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhh
Confidence 345555543 689999999976431 12445678999999999887754 34579999999765
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
+... .....|+.||...|.+.+..+ ..|++++++|||.+.++..... . .++ .+
T Consensus 142 ~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~-~~~----~~ 198 (244)
T 1edo_A 142 LIGN-----------------IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL-G-EDM----EK 198 (244)
T ss_dssp HHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-C-HHH----HH
T ss_pred cCCC-----------------CCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc-C-hHH----HH
Confidence 4211 113479999999998887543 3599999999999987642111 1 111 11
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc---CCCCceEEecCC
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV---NNANKIYNFINT 582 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~---~~~~~v~h~~n~ 582 (958)
.. ....|. ..+..++++|++++.++.++ ...+++|++...
T Consensus 199 ~~--~~~~~~----~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG 241 (244)
T 1edo_A 199 KI--LGTIPL----GRTGQPENVAGLVEFLALSPAASYITGQAFTIDGG 241 (244)
T ss_dssp HH--HTSCTT----CSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred HH--hhcCCC----CCCCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCC
Confidence 11 122332 24678999999999987432 234788888754
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.3e-14 Score=149.57 Aligned_cols=216 Identities=14% Similarity=0.100 Sum_probs=143.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||+|+||.+++++|+++ +.+|+++.|... ..+.+.+ .. .. ..++.++.+|++.
T Consensus 5 ~~k~vlVtGasggiG~~~a~~l~~~-G~~V~~~~r~~~---~~~~~~~---~~------~~-~~~~~~~~~D~~~----- 65 (251)
T 1zk4_A 5 DGKVAIITGGTLGIGLAIATKFVEE-GAKVMITGRHSD---VGEKAAK---SV------GT-PDQIQFFQHDSSD----- 65 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHH---HHHHHHH---HH------CC-TTTEEEEECCTTC-----
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHH---HHHHHHH---Hh------hc-cCceEEEECCCCC-----
Confidence 4578999999999999999999986 468988888532 1122211 11 00 1578899999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHh----hccCCC-ccEEEEecc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEF----SFLNKI-KSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~----a~~~~~-k~~~~vST~ 458 (958)
.+....+.+ .+|+|||||+..... . .++....+|+.|+.++.+. +.+.+. ++|+++||.
T Consensus 66 --~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 143 (251)
T 1zk4_A 66 --EDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI 143 (251)
T ss_dssp --HHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence 344554443 599999999975321 1 2345678999988776554 344455 789999998
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh------hCCCCEEEEecCceeccCCCCCcChhHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG------QMGLPVSIVRCGNIGGSLEFKNWNLVDLNL 532 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~------~~glp~~I~R~g~i~G~~~~g~~n~~d~~~ 532 (958)
+.+... .....|+.||+..|.+++... ..|++++++|||.++++..... .. ...
T Consensus 144 ~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~-~~-~~~- 203 (251)
T 1zk4_A 144 EGFVGD-----------------PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDL-PG-AEE- 203 (251)
T ss_dssp GGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTS-TT-HHH-
T ss_pred hhccCC-----------------CCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhc-Cc-hhh-
Confidence 765421 123479999999999887532 4589999999999988643211 10 000
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.. ......| ...+..++++|++++.++.... ..+.++++...
T Consensus 204 ---~~-~~~~~~~----~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 247 (251)
T 1zk4_A 204 ---AM-SQRTKTP----MGHIGEPNDIAYICVYLASNESKFATGSEFVVDGG 247 (251)
T ss_dssp ---HH-TSTTTCT----TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---hH-HHhhcCC----CCCCcCHHHHHHHHHHHcCcccccccCcEEEECCC
Confidence 00 0011122 1247889999999999886532 34788888754
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=161.88 Aligned_cols=204 Identities=12% Similarity=0.128 Sum_probs=147.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHc-CCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCC-CHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTL-GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT-IENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~-Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs-~~~~v~~~~~~~~~~ 790 (958)
.+++|+++||||+|.||.+++++|+++ |++|++++|+.+++.++.. ...+.++.+|++ +.+++.++++
T Consensus 21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-----~~~v~~~~~Dl~~d~~~~~~~~~----- 90 (372)
T 3slg_A 21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK-----HERMHFFEGDITINKEWVEYHVK----- 90 (372)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG-----STTEEEEECCTTTCHHHHHHHHH-----
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc-----CCCeEEEeCccCCCHHHHHHHhc-----
Confidence 356789999999999999999999999 9999999999765543321 246888999999 8888877775
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC----------
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF---------- 860 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~---------- 860 (958)
++|+||||||...... ..++....+++|+.|+..+++++.. . + +++|++||.+..-..
T Consensus 91 --~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~~~~~ll~a~~~----~-~-~~~v~~SS~~vyg~~~~~~~~e~~~ 158 (372)
T 3slg_A 91 --KCDVILPLVAIATPAT----YVKQPLRVFELDFEANLPIVRSAVK----Y-G-KHLVFPSTSEVYGMCADEQFDPDAS 158 (372)
T ss_dssp --HCSEEEECBCCCCHHH----HHHCHHHHHHHHTTTTHHHHHHHHH----H-T-CEEEEECCGGGGBSCCCSSBCTTTC
T ss_pred --cCCEEEEcCccccHHH----HhhCHHHHHHHHHHHHHHHHHHHHH----h-C-CcEEEeCcHHHhCCCCCCCCCcccc
Confidence 4899999999864321 2345668899999999988887643 2 2 699999997533211
Q ss_pred --------CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC------C---hhhhhhh------c
Q psy4557 861 --------AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST------D---RDVVDKY------D 917 (958)
Q Consensus 861 --------~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~------~---~~~~~~~------~ 917 (958)
.....|+.+|.+.+.+.+.++.+ |++++++.||.+..+...... . ....... .
T Consensus 159 ~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~----g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (372)
T 3slg_A 159 ALTYGPINKPRWIYACSKQLMDRVIWGYGME----GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENIS 234 (372)
T ss_dssp CEEECCTTCTTHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEE
T ss_pred ccccCCCCCCCCcHHHHHHHHHHHHHHHHHC----CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcE
Confidence 23347999999999999888754 899999999999877532100 0 0001100 0
Q ss_pred c----ccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 918 I----SKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 918 ~----~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
. .....++..+|+|++++.++..+.
T Consensus 235 ~~~~g~~~~~~i~v~Dva~a~~~~~~~~~ 263 (372)
T 3slg_A 235 LVDGGSQKRAFTYVDDGISALMKIIENSN 263 (372)
T ss_dssp EGGGGCCEEECEEHHHHHHHHHHHHHCGG
T ss_pred EeCCCceEEEEEEHHHHHHHHHHHHhccc
Confidence 0 011135678999999999887764
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.1e-14 Score=148.55 Aligned_cols=214 Identities=13% Similarity=0.108 Sum_probs=138.3
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEe-ccCCChhhHHHHHHHHHHHhccccccccccCceEE-ecccCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCP-VRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLIL-VKSDLSLEMLGL 397 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~cl-vR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~-v~gDl~~~~lGL 397 (958)
++||||||+|+||.+++++|++++ .+|+++ .|... ..+.+.+.+... ..++.. +.+|++.
T Consensus 2 k~vlITGasggiG~~~a~~l~~~G-~~v~~~~~r~~~---~~~~~~~~~~~~---------~~~~~~~~~~D~~~----- 63 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLAEDG-FALAIHYGQNRE---KAEEVAEEARRR---------GSPLVAVLGANLLE----- 63 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESSCHH---HHHHHHHHHHHT---------TCSCEEEEECCTTS-----
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHH---HHHHHHHHHHhc---------CCceEEEEeccCCC-----
Confidence 579999999999999999999764 678877 66422 122222222211 235556 8889874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHH----hhccCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIE----FSFLNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~----~a~~~~~k~~~~vST~~ 459 (958)
.+....+. ..+|+|||+|+..... ..++...++|+.|+.++++ .+.+.+.++|+++||..
T Consensus 64 --~~~~~~~~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~ 141 (245)
T 2ph3_A 64 --AEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVV 141 (245)
T ss_dssp --HHHHHHHHHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred --HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChh
Confidence 34444442 3799999999975421 1234567899999555544 44445568999999976
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...|.+++..+ ..|++++++|||.+.++..... . .++.
T Consensus 142 ~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~-~~~~---- 198 (245)
T 2ph3_A 142 GILGN-----------------PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERL-P-QEVK---- 198 (245)
T ss_dssp HHHCC-----------------SSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS-C-HHHH----
T ss_pred hccCC-----------------CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhc-C-HHHH----
Confidence 43211 012469999999998887543 3499999999999987642211 1 1111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.... ...|. ..+..++++|++++.++.... ..+.+|++...
T Consensus 199 ~~~~--~~~~~----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 241 (245)
T 2ph3_A 199 EAYL--KQIPA----GRFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGG 241 (245)
T ss_dssp HHHH--HTCTT----CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHH--hcCCC----CCCcCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 1111 11231 346899999999999886532 24788988754
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=159.37 Aligned_cols=182 Identities=17% Similarity=0.187 Sum_probs=134.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.-|+++||||+|+||++++++|+++|++|++++|+ .+|+++.+++.++++.. ++
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~---------------------~~Dl~d~~~~~~~~~~~-----~~ 64 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ---------------------DLDITNVLAVNKFFNEK-----KP 64 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT---------------------TCCTTCHHHHHHHHHHH-----CC
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc---------------------cCCCCCHHHHHHHHHhc-----CC
Confidence 45789999999999999999999999999999986 27999999988877654 68
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC-----------CC
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA-----------GL 863 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~-----------~~ 863 (958)
|++|||||.... +.+.++++..+++|+.|+..+++++.+. + .+||++||.+..-+.+ ..
T Consensus 65 d~vih~A~~~~~----~~~~~~~~~~~~~nv~~~~~l~~a~~~~-----~-~~iv~~SS~~v~~~~~~~~~~E~~~~~~~ 134 (292)
T 1vl0_A 65 NVVINCAAHTAV----DKCEEQYDLAYKINAIGPKNLAAAAYSV-----G-AEIVQISTDYVFDGEAKEPITEFDEVNPQ 134 (292)
T ss_dssp SEEEECCCCCCH----HHHHHCHHHHHHHHTHHHHHHHHHHHHH-----T-CEEEEEEEGGGSCSCCSSCBCTTSCCCCC
T ss_pred CEEEECCccCCH----HHHhcCHHHHHHHHHHHHHHHHHHHHHc-----C-CeEEEechHHeECCCCCCCCCCCCCCCCc
Confidence 999999997532 1234678899999999999999987652 2 3999999986543322 35
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh---c---cc--cCCCCCCHHHHHHHHH
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY---D---IS--KAVPVLTTKEISQSII 935 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~---~---~~--~~~~~~~p~~ia~~i~ 935 (958)
..|+.+|++.+.+++.++. .+..|.|+.+..+ .... ........ . .. ....++.++|+|++++
T Consensus 135 ~~Y~~sK~~~E~~~~~~~~-------~~~~lR~~~v~G~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~ 205 (292)
T 1vl0_A 135 SAYGKTKLEGENFVKALNP-------KYYIVRTAWLYGD-GNNF-VKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVL 205 (292)
T ss_dssp SHHHHHHHHHHHHHHHHCS-------SEEEEEECSEESS-SSCH-HHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhCC-------CeEEEeeeeeeCC-CcCh-HHHHHHHHhcCCcEEeecCeeeCCccHHHHHHHHH
Confidence 6899999999999987643 3677888887755 1110 01111100 0 00 1134567999999999
Q ss_pred HHhcCC
Q psy4557 936 FALLQP 941 (958)
Q Consensus 936 ~~l~~~ 941 (958)
+++..+
T Consensus 206 ~~~~~~ 211 (292)
T 1vl0_A 206 KVIDEK 211 (292)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 988765
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-14 Score=152.16 Aligned_cols=221 Identities=16% Similarity=0.137 Sum_probs=145.5
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|+++ +.+|++..|... ++.+.... ...++.++.+|++.
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~------~~~~~~~~---------~~~~~~~~~~D~~~----- 65 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVRE-GATVAIADIDIE------RARQAAAE---------IGPAAYAVQMDVTR----- 65 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHH------HHHHHHHH---------HCTTEEEEECCTTC-----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHH------HHHHHHHH---------hCCCceEEEeeCCC-----
Confidence 4578999999999999999999977 467888777421 22222211 13467889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccC-----CCccEEEEecc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLN-----KIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~-----~~k~~~~vST~ 458 (958)
.+....+.+ .+|++||||+..... ..++...++|+.|+.++++.+... ...+++++||.
T Consensus 66 --~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 143 (259)
T 4e6p_A 66 --QDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQ 143 (259)
T ss_dssp --HHHHHHHHHHHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECCh
Confidence 345555543 799999999975432 123456679999999999877432 13589999998
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.+... .....|+.||...|.+.+..+ .+|+++..++||.|.++..... ...+..+
T Consensus 144 ~~~~~~-----------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~ 203 (259)
T 4e6p_A 144 AGRRGE-----------------ALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGV---DALFARY 203 (259)
T ss_dssp GGTSCC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHH---HHHHHHH
T ss_pred hhccCC-----------------CCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhh---hhhhhhh
Confidence 765321 112479999999999987643 3599999999999987642110 0000000
Q ss_pred HH-----HHHHh-CCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCC
Q psy4557 535 LK-----AITRL-GYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPI 585 (958)
Q Consensus 535 ~~-----~~~~~-g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~ 585 (958)
.. ..... ...| ...+..++++|++++.++.... -.|++|++.....+
T Consensus 204 ~~~~~~~~~~~~~~~~p----~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG~~~ 258 (259)
T 4e6p_A 204 ENRPRGEKKRLVGEAVP----FGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGGNWM 258 (259)
T ss_dssp HTCCTTHHHHHHHHHST----TSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTTSSC
T ss_pred ccCChHHHHHHHhccCC----CCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcChhc
Confidence 00 00000 0111 2457889999999998875432 35789999875543
|
| >4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-15 Score=133.83 Aligned_cols=75 Identities=25% Similarity=0.411 Sum_probs=70.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCCCCCchhhcCccHHHHHHHHHHHHHHhCCCCChHHHhcCCcHHHHHHHHhcc
Q psy4557 200 ESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENK 274 (958)
Q Consensus 200 ~~~~~~e~~l~~iw~~vL~~~~i~~~~~FF~lGgdSL~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~la~~i~~~ 274 (958)
.+.+++|+.|.++|+++|+.+.+++++|||++|||||++++|+.+|++.||+++++.++|++||+++||++|...
T Consensus 12 ~~~~~~e~~l~~i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~la~~l~~~ 86 (93)
T 4i4d_A 12 TRRRALERDIAAIWAETLGRDSVGPHEDFAALGGNSIHAIXITNRVEELVDAELSIRVLLETRTVAGMTDHVHAT 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999754
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.6e-14 Score=150.48 Aligned_cols=218 Identities=11% Similarity=0.060 Sum_probs=144.1
Q ss_pred ccCceEEeccc--cchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 318 KYGNVLLTGVT--GYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 318 ~~~~VllTGaT--GflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
++++||||||+ |+||.+++++|+++ +.+|+++.|........+.+. ... .+..++.+|++.
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~l~---~~~----------~~~~~~~~D~~~--- 70 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQNDKLKGRVEEFA---AQL----------GSDIVLQCDVAE--- 70 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHT-TCEEEEEESSTTTHHHHHHHH---HHT----------TCCCEEECCTTC---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEEcCcHHHHHHHHHHH---Hhc----------CCcEEEEccCCC---
Confidence 35689999999 99999999999986 478888888652222222221 111 123677889874
Q ss_pred CCCcHHHHHHHhc-------ccCEEEEcccccCc---c------cC---hHHHHhhhHHHHHHHHHhhccCC--CccEEE
Q psy4557 396 GLKNQDEYVSLSY-------EIDMIIHAAAFVNL---I------LP---YNALYKSNVLATKNLIEFSFLNK--IKSFHY 454 (958)
Q Consensus 396 GL~~~~~~~~l~~-------~vd~IiH~AA~v~~---~------~~---~~~~~~~NV~gt~~ll~~a~~~~--~k~~~~ 454 (958)
.+....+.+ .+|++||||+.... . .+ ++....+|+.|+.++++.+...- ..++++
T Consensus 71 ----~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 146 (265)
T 1qsg_A 71 ----DASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLT 146 (265)
T ss_dssp ----HHHHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEE
Confidence 344554443 68999999997542 0 12 34567899999999999886531 248999
Q ss_pred EecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHH
Q psy4557 455 VSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDL 530 (958)
Q Consensus 455 vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~ 530 (958)
+||.+.+... .....|+.||...|.+.+..+ ..|++++++|||.|.++...+.....++
T Consensus 147 isS~~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 209 (265)
T 1qsg_A 147 LSYLGAERAI-----------------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKM 209 (265)
T ss_dssp EECGGGTSBC-----------------TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHH
T ss_pred EcchhhccCC-----------------CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHH
Confidence 9997654211 123479999999999987643 3489999999999988753222111121
Q ss_pred HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC
Q psy4557 531 NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN 583 (958)
Q Consensus 531 ~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~ 583 (958)
.+.... ..|- ..+..++++|++++.++.... -.+.++++....
T Consensus 210 ----~~~~~~--~~p~----~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 254 (265)
T 1qsg_A 210 ----LAHCEA--VTPI----RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGF 254 (265)
T ss_dssp ----HHHHHH--HSTT----SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred ----HHHHHh--cCCC----CCCCCHHHHHHHHHHHhCchhcCccCCEEEECCCc
Confidence 111111 1221 135688999999999886432 247888887653
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-13 Score=148.37 Aligned_cols=217 Identities=15% Similarity=0.150 Sum_probs=143.8
Q ss_pred ccCceEEeccc--cchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 318 KYGNVLLTGVT--GYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 318 ~~~~VllTGaT--GflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
++++||||||+ |+||.++++.|+++ +.+|+++.|.... .+.+.+..... .++.++.+|++.
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~~~---~~~~~~l~~~~----------~~~~~~~~Dl~~--- 82 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHRE-GAQLAFTYATPKL---EKRVREIAKGF----------GSDLVVKCDVSL--- 82 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHT-TCEEEEEESSGGG---HHHHHHHHHHT----------TCCCEEECCTTC---
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc-CCEEEEEeCCHHH---HHHHHHHHHhc----------CCeEEEEcCCCC---
Confidence 45789999999 99999999999987 4788888886431 12222221111 236678889874
Q ss_pred CCCcHHHHHHHhc-------ccCEEEEcccccCc--------cc---ChHHHHhhhHHHHHHHHHhhccC---CCccEEE
Q psy4557 396 GLKNQDEYVSLSY-------EIDMIIHAAAFVNL--------IL---PYNALYKSNVLATKNLIEFSFLN---KIKSFHY 454 (958)
Q Consensus 396 GL~~~~~~~~l~~-------~vd~IiH~AA~v~~--------~~---~~~~~~~~NV~gt~~ll~~a~~~---~~k~~~~ 454 (958)
.+....+.+ .+|++||||+.... .. .++....+|+.|+.++++.+... +..+|++
T Consensus 83 ----~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~ 158 (285)
T 2p91_A 83 ----DEDIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVT 158 (285)
T ss_dssp ----HHHHHHHHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEE
T ss_pred ----HHHHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEE
Confidence 344544443 78999999997542 11 23456789999999999887643 2268999
Q ss_pred EecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHH
Q psy4557 455 VSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDL 530 (958)
Q Consensus 455 vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~ 530 (958)
+||.+.+... .....|+.||...|.+++..+ ..|+++++++||.|.++...+.....++
T Consensus 159 isS~~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~ 221 (285)
T 2p91_A 159 LSYYGAEKVV-----------------PHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLL 221 (285)
T ss_dssp EECGGGTSBC-----------------TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHH
T ss_pred EccchhccCC-----------------CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHH
Confidence 9997654211 123479999999999887533 3599999999999998764332221221
Q ss_pred HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 531 NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 531 ~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.+.... ..|- ..+..++++|++++.++.... ..|.+|++...
T Consensus 222 ----~~~~~~--~~p~----~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg 265 (285)
T 2p91_A 222 ----MEHTTK--VNPF----GKPITIEDVGDTAVFLCSDWARAITGEVVHVDNG 265 (285)
T ss_dssp ----HHHHHH--HSTT----SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ----HHHHHh--cCCC----CCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence 111111 1231 125678999999999885432 24778888754
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=152.36 Aligned_cols=215 Identities=13% Similarity=0.075 Sum_probs=143.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++|+||||+|+||.+++++|++++...|+++.|.... ...+.+.+ .+ . ..++.++.+|++.+
T Consensus 4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~-~~~~~l~~---~~------~--~~~~~~~~~D~~~~---- 67 (254)
T 1sby_A 4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-TALAELKA---IN------P--KVNITFHTYDVTVP---- 67 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-HHHHHHHH---HC------T--TSEEEEEECCTTSC----
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH-HHHHHHHH---hC------C--CceEEEEEEecCCC----
Confidence 356899999999999999999998754348888886542 22223321 11 0 24788899999853
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccC----C---CccEEEEecccccCC
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLN----K---IKSFHYVSTDSIYPS 463 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~----~---~k~~~~vST~~v~~~ 463 (958)
.++...+. ..+|+|||||+... ...++....+|+.|+.++++.+... + ..+++++||.+.+..
T Consensus 68 --~~~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 144 (254)
T 1sby_A 68 --VAESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA 144 (254)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC
T ss_pred --hHHHHHHHHHHHHhcCCCCEEEECCccCC-HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccC
Confidence 02233322 37999999999753 3456778899999999999877531 1 256999999877532
Q ss_pred CCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-h---CCCCEEEEecCceeccCCCCC--cCh-hHHHHHHHH
Q psy4557 464 TSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-Q---MGLPVSIVRCGNIGGSLEFKN--WNL-VDLNLYILK 536 (958)
Q Consensus 464 ~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~---~glp~~I~R~g~i~G~~~~g~--~n~-~d~~~~l~~ 536 (958)
. .....|+.||+..|.+++..+ + .|++++++|||.|.++..... +.. ......
T Consensus 145 ~-----------------~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~--- 204 (254)
T 1sby_A 145 I-----------------HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAE--- 204 (254)
T ss_dssp C-----------------TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHH---
T ss_pred C-----------------CCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHH---
Confidence 1 113479999999999987643 2 599999999999987642111 100 010100
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCC
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINT 582 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~ 582 (958)
. ... ..+..++.+|++++.++.. ...+.+|++...
T Consensus 205 -~--~~~-------~~~~~~~dvA~~i~~~~~~-~~~G~~~~v~gG 239 (254)
T 1sby_A 205 -L--LLS-------HPTQTSEQCGQNFVKAIEA-NKNGAIWKLDLG 239 (254)
T ss_dssp -H--HTT-------SCCEEHHHHHHHHHHHHHH-CCTTCEEEEETT
T ss_pred -H--Hhc-------CCCCCHHHHHHHHHHHHHc-CCCCCEEEEeCC
Confidence 0 111 1234789999999988753 345788888764
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-14 Score=151.39 Aligned_cols=215 Identities=11% Similarity=0.093 Sum_probs=144.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|+++ +.+|+++.|...... .+.+ . ...++.++.+|++.
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~---~~~~---~---------~~~~~~~~~~D~~~----- 69 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQ-GASAVLLDLPNSGGE---AQAK---K---------LGNNCVFAPADVTS----- 69 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECTTSSHH---HHHH---H---------HCTTEEEEECCTTC-----
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCcHhHH---HHHH---H---------hCCceEEEEcCCCC-----
Confidence 4678999999999999999999987 468988888654321 1111 1 12478889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc----------cC---hHHHHhhhHHHHHHHHHhhccC----------
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI----------LP---YNALYKSNVLATKNLIEFSFLN---------- 447 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~----------~~---~~~~~~~NV~gt~~ll~~a~~~---------- 447 (958)
.+....+.+ .+|+|||||+..... .+ +.....+|+.|+.++++.+...
T Consensus 70 --~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~ 147 (265)
T 2o23_A 70 --EKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGG 147 (265)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTS
T ss_pred --HHHHHHHHHHHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCC
Confidence 345555544 799999999975431 12 3456789999999999877532
Q ss_pred CCccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCC
Q psy4557 448 KIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFK 523 (958)
Q Consensus 448 ~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g 523 (958)
+..+|+++||...+... .....|+.||...|.+++..+ ..|+++++++||.+.++....
T Consensus 148 ~~~~iv~isS~~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~ 210 (265)
T 2o23_A 148 QRGVIINTASVAAFEGQ-----------------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS 210 (265)
T ss_dssp CCEEEEEECCTHHHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----
T ss_pred CCcEEEEeCChhhcCCC-----------------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccc
Confidence 45689999998765321 123479999999998886533 359999999999997654221
Q ss_pred CcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCC
Q psy4557 524 NWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTN 583 (958)
Q Consensus 524 ~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~ 583 (958)
. . .+. ..... ...|. ...+..++++|++++.++.+....++++++....
T Consensus 211 ~-~-~~~----~~~~~--~~~~~---~~~~~~~~dva~~~~~l~~~~~~~G~~i~vdgG~ 259 (265)
T 2o23_A 211 L-P-EKV----CNFLA--SQVPF---PSRLGDPAEYAHLVQAIIENPFLNGEVIRLDGAI 259 (265)
T ss_dssp ------------CHHH--HTCSS---SCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTC
T ss_pred c-C-HHH----HHHHH--HcCCC---cCCCCCHHHHHHHHHHHhhcCccCceEEEECCCE
Confidence 1 0 010 00011 11231 1236788999999999886555567888887543
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-14 Score=151.56 Aligned_cols=229 Identities=16% Similarity=0.106 Sum_probs=149.9
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCCh---------hhHHHHHHHHHHHhccccccccccCceEEec
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPN---------KTLLQRLEDIMLKYHMSLDLNNYTDRLILVK 387 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~---------~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~ 387 (958)
.+++++|||||+|+||.+++++|++++ .+|++..|.... ....+...+.+.. ...++.++.
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 77 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVALAEAG-ADIAICDRCENSDVVGYPLATADDLAETVALVEK---------TGRRCISAK 77 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH---------TTCCEEEEE
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCccccccccccccHHHHHHHHHHHHh---------cCCeEEEEe
Confidence 356799999999999999999999774 688888886321 2222222222221 235788999
Q ss_pred ccCCCCCCCCCcHHHHHHHhc-------ccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCC
Q psy4557 388 SDLSLEMLGLKNQDEYVSLSY-------EIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKI 449 (958)
Q Consensus 388 gDl~~~~lGL~~~~~~~~l~~-------~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~ 449 (958)
+|++. .++...+.+ .+|++||||+..... .+ ++...++|+.|+.++++.+. +.+.
T Consensus 78 ~Dv~~-------~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~ 150 (281)
T 3s55_A 78 VDVKD-------RAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNY 150 (281)
T ss_dssp CCTTC-------HHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCC-------HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 99874 344554443 799999999975421 12 34567799999999988763 2344
Q ss_pred ccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCc
Q psy4557 450 KSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNW 525 (958)
Q Consensus 450 k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~ 525 (958)
.+++++||.+.+... .....|+.||...+.+.+..+ .+|+++..++||.|.++......
T Consensus 151 g~iv~isS~~~~~~~-----------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~ 213 (281)
T 3s55_A 151 GRIVTVSSMLGHSAN-----------------FAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDF 213 (281)
T ss_dssp EEEEEECCGGGGSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHH
T ss_pred CEEEEECChhhcCCC-----------------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchh
Confidence 689999998765321 123479999999999887643 35999999999999987643210
Q ss_pred ChhHH--------HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCC
Q psy4557 526 NLVDL--------NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNP 584 (958)
Q Consensus 526 n~~d~--------~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~ 584 (958)
....+ ...........+..| ..+..++++|++++.++.... -.|.++++.....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~ 277 (281)
T 3s55_A 214 VFGTMRPDLEKPTLKDVESVFASLHLQY-----APFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGAT 277 (281)
T ss_dssp HHHC-------CCHHHHHHHHHHHCSSS-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred hhccccccccccchhHHHHHHHhhhccC-----cCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCcc
Confidence 00000 000001111112111 457889999999999886543 3478999876543
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-13 Score=146.27 Aligned_cols=216 Identities=12% Similarity=0.095 Sum_probs=145.2
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.+++|||||+|+||.+++++|++++ .+|++..|.... ..+.+.+.+.. ...++.++.+|++.
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~Dv~d------ 65 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEG-YNVAVNYAGSKE--KAEAVVEEIKA---------KGVDSFAIQANVAD------ 65 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHH--HHHHHHHHHHH---------TTSCEEEEECCTTC------
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHH--HHHHHHHHHHh---------cCCcEEEEEccCCC------
Confidence 4689999999999999999999774 677776664321 22223222221 13578889999874
Q ss_pred cHHHHHHHhc-------ccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEecccc
Q psy4557 399 NQDEYVSLSY-------EIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~~-------~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~v 460 (958)
.++...+.+ .+|++||||+..... . .++...++|+.|+.++++.+ .+.+..+++++||.+.
T Consensus 66 -~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~ 144 (246)
T 3osu_A 66 -ADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVG 144 (246)
T ss_dssp -HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHH
T ss_pred -HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhh
Confidence 345555443 789999999975421 1 23456789999999999887 3344568999999765
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
+... .....|+.||...|.+.+..+ .+|+++..++||.|.++..... ..++...
T Consensus 145 ~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~--- 202 (246)
T 3osu_A 145 AVGN-----------------PGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL--SDELKEQ--- 202 (246)
T ss_dssp HHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCS--CHHHHHH---
T ss_pred cCCC-----------------CCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCccccc--CHHHHHH---
Confidence 4211 123479999999998887533 4699999999999988764322 1121111
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.. ...|- ..+...+++|++++.++.... -.|+++++...
T Consensus 203 -~~--~~~p~----~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG 243 (246)
T 3osu_A 203 -ML--TQIPL----ARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243 (246)
T ss_dssp -HH--TTCTT----CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred -HH--hcCCC----CCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 11 12231 235678999999999886543 24788988754
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-14 Score=153.96 Aligned_cols=194 Identities=15% Similarity=0.111 Sum_probs=140.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+++||||+|.||.+++++|+++|++|++++|+.+..+ +. .+.++.+|++ .+++.++++ ++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~--------~~~~~~~Dl~-~~~~~~~~~-------~~d 64 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN--------DYEYRVSDYT-LEDLINQLN-------DVD 64 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--------------CCEEEECCCC-HHHHHHHTT-------TCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC--------ceEEEEcccc-HHHHHHhhc-------CCC
Confidence 478999999999999999999999999999999944332 21 4678899999 877766554 799
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-----------CCCCh
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP-----------FAGLA 864 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~-----------~~~~~ 864 (958)
++|||||..... .++..+++|+.|+..+++++.. . +.+++|++||.+..-. .....
T Consensus 65 ~Vih~a~~~~~~--------~~~~~~~~n~~~~~~ll~a~~~----~-~~~r~v~~SS~~vyg~~~~~~~~E~~~~~p~~ 131 (311)
T 3m2p_A 65 AVVHLAATRGSQ--------GKISEFHDNEILTQNLYDACYE----N-NISNIVYASTISAYSDETSLPWNEKELPLPDL 131 (311)
T ss_dssp EEEECCCCCCSS--------SCGGGTHHHHHHHHHHHHHHHH----T-TCCEEEEEEEGGGCCCGGGCSBCTTSCCCCSS
T ss_pred EEEEccccCCCC--------ChHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEEccHHHhCCCCCCCCCCCCCCCCCc
Confidence 999999986543 3456789999999888887643 2 3469999999665321 11346
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhh------cc----ccCCCCCCHHHHHHH
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKY------DI----SKAVPVLTTKEISQS 933 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~------~~----~~~~~~~~p~~ia~~ 933 (958)
.|+.+|.+.+.+.+.++.+ .|++++.+.||.+..+...... ........ .. .....++..+|+|++
T Consensus 132 ~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a 208 (311)
T 3m2p_A 132 MYGVSKLACEHIGNIYSRK---KGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKS 208 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHH---SCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH---cCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHH
Confidence 7999999999999998875 4899999999999887543210 01111110 00 011235678999999
Q ss_pred HHHHhcCCC
Q psy4557 934 IIFALLQPS 942 (958)
Q Consensus 934 i~~~l~~~~ 942 (958)
++.++..+.
T Consensus 209 ~~~~~~~~~ 217 (311)
T 3m2p_A 209 VIYALKQEK 217 (311)
T ss_dssp HHHHTTCTT
T ss_pred HHHHHhcCC
Confidence 999887764
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-13 Score=144.86 Aligned_cols=214 Identities=14% Similarity=0.104 Sum_probs=140.0
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++++||||||+|+||.+++++|++++ .+|++..|... ++.+.... ..+++.++.+|++.
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~------~~~~~~~~---------~~~~~~~~~~D~~~---- 71 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLG-SKVIISGSNEE------KLKSLGNA---------LKDNYTIEVCNLAN---- 71 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHH------HHHHHHHH---------HCSSEEEEECCTTS----
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHH------HHHHHHHH---------hccCccEEEcCCCC----
Confidence 467899999999999999999999774 78888887422 22222111 13578888899874
Q ss_pred CCcHHHHHHHhc---ccCEEEEcccccCc-------ccChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccccC
Q psy4557 397 LKNQDEYVSLSY---EIDMIIHAAAFVNL-------ILPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSIYP 462 (958)
Q Consensus 397 L~~~~~~~~l~~---~vd~IiH~AA~v~~-------~~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v~~ 462 (958)
.+....+.+ .+|++||+|+.... ...++...++|+.|+.++++.+. +.+..+|+++||.+.+.
T Consensus 72 ---~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 148 (249)
T 3f9i_A 72 ---KEECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA 148 (249)
T ss_dssp ---HHHHHHHHHTCSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--
T ss_pred ---HHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc
Confidence 345555544 68999999997542 12355678899999999988763 23446899999977653
Q ss_pred CCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHH
Q psy4557 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI 538 (958)
Q Consensus 463 ~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~ 538 (958)
.. .....|+.||...|.+++..+ .+|+++.+++||.|.++..... . .+....+
T Consensus 149 ~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~-~~~~~~~---- 205 (249)
T 3f9i_A 149 GN-----------------PGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKL-N-EKQREAI---- 205 (249)
T ss_dssp CC-----------------SCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------C-C-HHHHHHH----
T ss_pred CC-----------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCccccc-C-HHHHHHH----
Confidence 21 123479999999998886532 4699999999999987643221 1 1111111
Q ss_pred HHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 539 TRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 539 ~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.. ..| ...+..++++|++++.++.... -.|+++++...
T Consensus 206 ~~--~~~----~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG 245 (249)
T 3f9i_A 206 VQ--KIP----LGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGG 245 (249)
T ss_dssp HH--HCT----TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred Hh--cCC----CCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence 11 112 2346788999999999886543 25788988754
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-13 Score=146.57 Aligned_cols=221 Identities=14% Similarity=0.033 Sum_probs=144.1
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|+++ +.+|+++.|.. . ...+.+.+.+... ...++.++.+|++.+.-
T Consensus 10 ~~k~~lVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~-~-~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~-- 76 (276)
T 1mxh_A 10 ECPAAVITGGARRIGHSIAVRLHQQ-GFRVVVHYRHS-E-GAAQRLVAELNAA--------RAGSAVLCKGDLSLSSS-- 76 (276)
T ss_dssp -CCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSC-H-HHHHHHHHHHHHH--------STTCEEEEECCCSSSTT--
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCC-h-HHHHHHHHHHHHh--------cCCceEEEeccCCCccc--
Confidence 4578999999999999999999976 46888888831 1 1122222222111 12478889999985310
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc------------------cChHHHHhhhHHHHHHHHHhhccC---CC
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI------------------LPYNALYKSNVLATKNLIEFSFLN---KI 449 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~------------------~~~~~~~~~NV~gt~~ll~~a~~~---~~ 449 (958)
..+....+. ..+|++||||+..... ..++..+.+|+.|+.++++.+... +.
T Consensus 77 -~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~ 155 (276)
T 1mxh_A 77 -LLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGG 155 (276)
T ss_dssp -HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC----
T ss_pred -cHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 003333333 3789999999965321 233456789999999999887652 33
Q ss_pred ------ccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceecc
Q psy4557 450 ------KSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGS 519 (958)
Q Consensus 450 ------k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~ 519 (958)
.+|+++||.+.+... .....|+.||...+.+.+..+ ..|++++++|||.|.++
T Consensus 156 ~~~~~~g~iv~isS~~~~~~~-----------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~ 218 (276)
T 1mxh_A 156 AWRSRNLSVVNLCDAMTDLPL-----------------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP 218 (276)
T ss_dssp ---CCCEEEEEECCGGGGSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC
T ss_pred CCCCCCcEEEEECchhhcCCC-----------------CCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC
Confidence 689999998765321 123479999999999887633 34999999999999987
Q ss_pred CCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 520 LEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 520 ~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
. . .. .++. +... ...|. ..++..++++|++++.++.... -.|.++++...
T Consensus 219 -~-~-~~-~~~~----~~~~--~~~p~---~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 270 (276)
T 1mxh_A 219 -P-A-MP-QETQ----EEYR--RKVPL---GQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGG 270 (276)
T ss_dssp -S-S-SC-HHHH----HHHH--TTCTT---TSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -c-c-CC-HHHH----HHHH--hcCCC---CCCCCCHHHHHHHHHHHhCccccCccCcEEEECCc
Confidence 2 1 21 1211 1111 12231 1226789999999999886432 24778888654
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-13 Score=145.96 Aligned_cols=218 Identities=15% Similarity=0.070 Sum_probs=142.7
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|++++ .+|+++.|... ..+.+.+.+.. ...++.++.+|++.
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~---~~~~~~~~~~~---------~~~~~~~~~~D~~~----- 81 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEK---ELDECLEIWRE---------KGLNVEGSVCDLLS----- 81 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHHHH---------TTCCEEEEECCTTC-----
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCHH---HHHHHHHHHHh---------cCCceEEEECCCCC-----
Confidence 46789999999999999999999764 68888888532 12222222211 12468889999874
Q ss_pred CcHHHHHHHh--------cccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 398 KNQDEYVSLS--------YEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~--------~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
.+....+. ..+|++||||+..... . .++...++|+.|+.++++.+. +.+..+++++||.
T Consensus 82 --~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~ 159 (273)
T 1ae1_A 82 --RTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSI 159 (273)
T ss_dssp --HHHHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCG
T ss_pred --HHHHHHHHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCH
Confidence 34444443 5799999999975321 1 234566799999999998773 3345789999998
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcC----hhHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWN----LVDL 530 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n----~~d~ 530 (958)
+.+... .....|+.||...|.+.+..+ ..|++++++|||.+.++....... ..++
T Consensus 160 ~~~~~~-----------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~ 222 (273)
T 1ae1_A 160 AGFSAL-----------------PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEE 222 (273)
T ss_dssp GGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHH
T ss_pred hhcCCC-----------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHH
Confidence 776421 123479999999999887632 359999999999998875322211 1111
Q ss_pred HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 531 NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 531 ~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
...+ .. ..|. -.+...+++|++++.++.... -.++++++...
T Consensus 223 ~~~~----~~--~~p~----~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 266 (273)
T 1ae1_A 223 IDNF----IV--KTPM----GRAGKPQEVSALIAFLCFPAASYITGQIIWADGG 266 (273)
T ss_dssp HHHH----HH--HSTT----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHH----Hh--cCCC----CCCcCHHHHHHHHHHHhCccccCcCCCEEEECCC
Confidence 1111 11 1231 135788999999998875432 35788888754
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-14 Score=150.59 Aligned_cols=229 Identities=11% Similarity=0.072 Sum_probs=147.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|+++ +.+|+++.|.... .+.+.+.+... ....++.++.+|++.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~---~~~~~~~l~~~-------~~~~~~~~~~~D~~~----- 69 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLK-GAKVALVDWNLEA---GVQCKAALHEQ-------FEPQKTLFIQCDVAD----- 69 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHH---HHHHHHHHTTT-------SCGGGEEEEECCTTS-----
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEEECCHHH---HHHHHHHHHhh-------cCCCceEEEecCCCC-----
Confidence 3568999999999999999999987 4788888885321 12222111100 002468889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcccChHHHHhhhHHHHHHH----HHhhccCC---CccEEEEecccccCC
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLILPYNALYKSNVLATKNL----IEFSFLNK---IKSFHYVSTDSIYPS 463 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~l----l~~a~~~~---~k~~~~vST~~v~~~ 463 (958)
.++...+.+ .+|++||||+... ...++....+|+.|+..+ +..+.+.+ ..+++++||.+.+..
T Consensus 70 --~~~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 146 (267)
T 2gdz_A 70 --QQQLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP 146 (267)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCC-hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCC
Confidence 344554443 5799999999653 345677788999876554 44444322 468999999876542
Q ss_pred CCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHH---H---hhCCCCEEEEecCceeccCCCCCcChhHHHHH---H
Q psy4557 464 TSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN---A---GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY---I 534 (958)
Q Consensus 464 ~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~---a---~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~---l 534 (958)
. .....|+.||...|.+.+. + ...|++++++|||.+.++........ ..... +
T Consensus 147 ~-----------------~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~ 208 (267)
T 2gdz_A 147 V-----------------AQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKE-ENMGQYIEY 208 (267)
T ss_dssp C-----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCH-HHHGGGGGG
T ss_pred C-----------------CCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccc-cccchhhhH
Confidence 1 1123699999999998875 2 24699999999999976531111110 00000 0
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHH
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKT 589 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~ 589 (958)
.+.... ..| ...++.++++|++++.++......+.++++.++...++.+
T Consensus 209 ~~~~~~--~~~----~~~~~~~~dvA~~v~~l~s~~~~~G~~~~v~gg~~~~~~~ 257 (267)
T 2gdz_A 209 KDHIKD--MIK----YYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQD 257 (267)
T ss_dssp HHHHHH--HHH----HHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECC
T ss_pred HHHHHH--Hhc----cccCCCHHHHHHHHHHHhcCcCCCCcEEEecCCCcccccC
Confidence 000000 001 1235788999999999887655678899999877766654
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-14 Score=150.54 Aligned_cols=209 Identities=11% Similarity=0.095 Sum_probs=142.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|+++ +.+|+++.|... ++.+.... ...++.++.+|++.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~------~~~~~~~~---------~~~~~~~~~~D~~~----- 64 (260)
T 1nff_A 6 TGKVALVSGGARGMGASHVRAMVAE-GAKVVFGDILDE------EGKAMAAE---------LADAARYVHLDVTQ----- 64 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHH------HHHHHHHH---------TGGGEEEEECCTTC-----
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHH------HHHHHHHH---------hhcCceEEEecCCC-----
Confidence 4578999999999999999999976 468888888532 12221111 11357788899874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~ 459 (958)
.+....+.+ .+|++||||+..... ..++...++|+.|+.++++.+ .+.+..+++++||.+
T Consensus 65 --~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~ 142 (260)
T 1nff_A 65 --PAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIE 142 (260)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehh
Confidence 355555544 799999999975431 123456789999997665544 334457999999987
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...|.+.+..+ ..|++++++|||.++++... +....
T Consensus 143 ~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--~~~~~------ 197 (260)
T 1nff_A 143 GLAGT-----------------VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD--WVPED------ 197 (260)
T ss_dssp GTSCC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT--TSCTT------
T ss_pred hcCCC-----------------CCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc--cchhh------
Confidence 75321 112479999999999887633 35999999999999987532 11100
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN 583 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~ 583 (958)
....| ...+..++++|++++.++.... ..+.+|++....
T Consensus 198 -----~~~~~----~~~~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG~ 238 (260)
T 1nff_A 198 -----IFQTA----LGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGT 238 (260)
T ss_dssp -----CSCCS----SSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -----HHhCc----cCCCCCHHHHHHHHHHHhCccccCCcCCEEEECCCe
Confidence 00112 1246788999999999876432 247889987654
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-14 Score=155.82 Aligned_cols=195 Identities=17% Similarity=0.181 Sum_probs=139.1
Q ss_pred EEEEcCCchHHHHHHHHHHHc--CCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTL--GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~--Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
++||||+|+||.+++++|+++ |++|++++|+....+ .+.++.+|+++.+++.++++. .++|+
T Consensus 2 vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----------~~~~~~~D~~d~~~~~~~~~~-----~~~d~ 65 (317)
T 3ajr_A 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-----------GIKFITLDVSNRDEIDRAVEK-----YSIDA 65 (317)
T ss_dssp EEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-----------TCCEEECCTTCHHHHHHHHHH-----TTCCE
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-----------CceEEEecCCCHHHHHHHHhh-----cCCcE
Confidence 899999999999999999999 899999998754321 245678999999988877764 26999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC------------CCCh
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF------------AGLA 864 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~------------~~~~ 864 (958)
+|||||.... ...+.++..+++|+.|+..+++++.+ .+.+++|++||.+...+. ....
T Consensus 66 vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~-----~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~ 135 (317)
T 3ajr_A 66 IFHLAGILSA-----KGEKDPALAYKVNMNGTYNILEAAKQ-----HRVEKVVIPSTIGVFGPETPKNKVPSITITRPRT 135 (317)
T ss_dssp EEECCCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHH-----TTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCCS
T ss_pred EEECCcccCC-----ccccChHHHhhhhhHHHHHHHHHHHH-----cCCCEEEEecCHHHhCCCCCCCCccccccCCCCc
Confidence 9999997532 12355788999999999999987743 234699999998765332 1356
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCc-ccCCCCCCCCC-hhh----hhhhc---cc------cCCCCCCHHH
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGD-VKTELLSHSTD-RDV----VDKYD---IS------KAVPVLTTKE 929 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~-v~T~~~~~~~~-~~~----~~~~~---~~------~~~~~~~p~~ 929 (958)
.|+.||++.+.+++.++.+. |++++++.|+. +.+.+...... ... ..... .. ....++..+|
T Consensus 136 ~Y~~sK~~~e~~~~~~~~~~---~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 212 (317)
T 3ajr_A 136 MFGVTKIAAELLGQYYYEKF---GLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPD 212 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc---CCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHH
Confidence 89999999999999888764 79999997544 44432111100 000 00000 00 0112356799
Q ss_pred HHHHHHHHhcCCC
Q psy4557 930 ISQSIIFALLQPS 942 (958)
Q Consensus 930 ia~~i~~~l~~~~ 942 (958)
+|++++.++.++.
T Consensus 213 va~a~~~~l~~~~ 225 (317)
T 3ajr_A 213 ALKALVDLYEADR 225 (317)
T ss_dssp HHHHHHHHHHCCG
T ss_pred HHHHHHHHHhCCc
Confidence 9999999887664
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.7e-14 Score=148.46 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=121.9
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|++++ .+|+++.|... ..+.+.+.+.. ...++.++.+|++.
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G-~~V~~~~r~~~---~~~~~~~~~~~---------~~~~~~~~~~D~~~----- 69 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREG-AAVVVADINAE---AAEAVAKQIVA---------DGGTAISVAVDVSD----- 69 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHHHH---------TTCEEEEEECCTTS-----
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHH---HHHHHHHHHHh---------cCCcEEEEEccCCC-----
Confidence 56789999999999999999999874 67888877432 22223222221 13578889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCc-------ccC---hHHHHhhhHHHHHHHHHhh----ccCCCccEEEEe
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNL-------ILP---YNALYKSNVLATKNLIEFS----FLNKIKSFHYVS 456 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~-------~~~---~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vS 456 (958)
.+....+.+ .+|++||||+.... ..+ +....++|+.|+.++.+.+ .+.+..+|+++|
T Consensus 70 --~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~is 147 (253)
T 3qiv_A 70 --PESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQS 147 (253)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 344444443 79999999997321 112 3456789999966665543 334457899999
Q ss_pred cccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHH
Q psy4557 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNL 532 (958)
Q Consensus 457 T~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~ 532 (958)
|.+.+. ....|+.||...|.+++..+ ..|+++..++||.+.++..... ...++..
T Consensus 148 S~~~~~--------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~ 206 (253)
T 3qiv_A 148 STAAWL--------------------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTT-TPKEMVD 206 (253)
T ss_dssp C-------------------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-------------------
T ss_pred CccccC--------------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhc-CcHHHHH
Confidence 987652 12369999999999887633 3489999999999988753221 1111111
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCC
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNP 584 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~ 584 (958)
.+.+ ..| ...+..++++|++++.++.... -.|++|++.....
T Consensus 207 ~~~~------~~~----~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~~ 250 (253)
T 3qiv_A 207 DIVK------GLP----LSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGGQI 250 (253)
T ss_dssp -----------------------CCHHHHHHHHHHSGGGTTCCSCEEEC-----
T ss_pred HHhc------cCC----CCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCee
Confidence 1111 111 1224567899999998876433 2578999876543
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-13 Score=148.37 Aligned_cols=230 Identities=11% Similarity=0.058 Sum_probs=143.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
..++||||||+|+||.+++++|++++ .+|++..|.... ..+.+.+.+.. ....++.++.+|++.
T Consensus 24 ~~k~~lVTGas~GIG~~ia~~la~~G-~~V~~~~r~~~~--~~~~~~~~~~~--------~~~~~~~~~~~Dv~d----- 87 (281)
T 3v2h_A 24 MTKTAVITGSTSGIGLAIARTLAKAG-ANIVLNGFGAPD--EIRTVTDEVAG--------LSSGTVLHHPADMTK----- 87 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEECCCCHH--HHHHHHHHHHT--------TCSSCEEEECCCTTC-----
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCChH--HHHHHHHHHhh--------ccCCcEEEEeCCCCC-----
Confidence 46789999999999999999999774 688887774321 12222222211 113578899999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCccc----C---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLIL----P---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~~----~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
.++...+.+ .+|++||||+...... + ++...++|+.|+.++++.+. +.+..+++++||.+
T Consensus 88 --~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~ 165 (281)
T 3v2h_A 88 --PSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAH 165 (281)
T ss_dssp --HHHHHHHHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred --HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 345555443 7899999999754321 2 34567899999999998763 33446899999976
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...+.+.+..+ ..|+++..++||.|.++..............+.
T Consensus 166 ~~~~~-----------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~ 228 (281)
T 3v2h_A 166 GLVAS-----------------PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGIT 228 (281)
T ss_dssp GTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----------------
T ss_pred cccCC-----------------CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCC
Confidence 54311 123479999999999887532 359999999999998765322111000000000
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
..-.....+-.......+..++++|++++.++.... -.|.++++...
T Consensus 229 ~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG 277 (281)
T 3v2h_A 229 EEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGG 277 (281)
T ss_dssp -----------CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTT
T ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCC
Confidence 000000000001112457899999999999886542 35788888653
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-13 Score=145.60 Aligned_cols=214 Identities=15% Similarity=0.148 Sum_probs=134.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|++++ .+|+++.|.... ... .+.++.+|++.
T Consensus 6 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~--------------------~~~--~~~~~~~D~~d----- 57 (250)
T 2fwm_X 6 SGKNVWVTGAGKGIGYATALAFVEAG-AKVTGFDQAFTQ--------------------EQY--PFATEVMDVAD----- 57 (250)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCCCS--------------------SCC--SSEEEECCTTC-----
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCchhh--------------------hcC--CceEEEcCCCC-----
Confidence 35689999999999999999999874 788888886431 011 26677888874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~~ 459 (958)
.+....+.+ .+|++||||+..... ..++....+|+.|+.++++.+ .+.+..+++++||.+
T Consensus 58 --~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~ 135 (250)
T 2fwm_X 58 --AAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDA 135 (250)
T ss_dssp --HHHHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGG
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchh
Confidence 355555543 789999999975431 124456789999999999877 333457899999987
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHH-HH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNL-YI 534 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~-~l 534 (958)
.+... .....|+.||...|.+.+..+ ..|++++++|||.+.++.....+...+... .+
T Consensus 136 ~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~ 198 (250)
T 2fwm_X 136 AHTPR-----------------IGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRI 198 (250)
T ss_dssp GTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------------
T ss_pred hCCCC-----------------CCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHH
Confidence 65311 123479999999999887643 359999999999998875322111111111 11
Q ss_pred HHHHHHhC-CcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 535 LKAITRLG-YAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 535 ~~~~~~~g-~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
.....+.. ..|. ..+...+++|++++.++... ...+.++++...
T Consensus 199 ~~~~~~~~~~~p~----~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 245 (250)
T 2fwm_X 199 RGFGEQFKLGIPL----GKIARPQEIANTILFLASDLASHITLQDIVVDGG 245 (250)
T ss_dssp ---------------------CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hhhhhcccccCCC----CCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 10000000 1121 13577899999999988653 235778888754
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-13 Score=145.11 Aligned_cols=226 Identities=12% Similarity=0.071 Sum_probs=146.4
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCC----------hhhHHHHHHHHHHHhccccccccccCceEEe
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETP----------NKTLLQRLEDIMLKYHMSLDLNNYTDRLILV 386 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~----------~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v 386 (958)
.++++||||||+|+||.+++++|+++ +.+|+++.|... .....+.+.+.+. ....++.++
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 82 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAE-GADIIACDICAPVSASVTYAPASPEDLDETARLVE---------DQGRKALTR 82 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHH---------TTTCCEEEE
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeccccccccccccccCHHHHHHHHHHHH---------hcCCeEEEE
Confidence 35678999999999999999999977 468888777321 2222223322221 123578889
Q ss_pred cccCCCCCCCCCcHHHHHHHhc-------ccCEEEEcccccCccc----C---hHHHHhhhHHHHHHHHHhhcc-----C
Q psy4557 387 KSDLSLEMLGLKNQDEYVSLSY-------EIDMIIHAAAFVNLIL----P---YNALYKSNVLATKNLIEFSFL-----N 447 (958)
Q Consensus 387 ~gDl~~~~lGL~~~~~~~~l~~-------~vd~IiH~AA~v~~~~----~---~~~~~~~NV~gt~~ll~~a~~-----~ 447 (958)
.+|++. .+....+.+ .+|++||||+...... + ++..+++|+.|+.++++.+.. .
T Consensus 83 ~~Dv~~-------~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~ 155 (280)
T 3pgx_A 83 VLDVRD-------DAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAG 155 (280)
T ss_dssp ECCTTC-------HHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC
T ss_pred EcCCCC-------HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 999874 345555433 7999999999764321 2 335677999999999887632 2
Q ss_pred CCccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCC
Q psy4557 448 KIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFK 523 (958)
Q Consensus 448 ~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g 523 (958)
...+++++||...+... .....|+.||...+.+.+..+ .+|+++..++||.|.++..
T Consensus 156 ~~g~iv~isS~~~~~~~-----------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~-- 216 (280)
T 3pgx_A 156 NGGSIVVVSSSAGLKAT-----------------PGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMI-- 216 (280)
T ss_dssp SCEEEEEECCGGGTSCC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTC--
T ss_pred CCCEEEEEcchhhccCC-----------------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCccc--
Confidence 23579999997764321 112479999999999887533 3699999999999987652
Q ss_pred CcChhHHHHHHHHHHHH-hCCcCCCC-CcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 524 NWNLVDLNLYILKAITR-LGYAPDID-WYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 524 ~~n~~d~~~~l~~~~~~-~g~~P~~~-~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
... .....+..... ....+... ....+..++++|++++.++.... -.|+++++..
T Consensus 217 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG 275 (280)
T 3pgx_A 217 --EPE-AMMEIFARHPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSGTLTGTQIPVDK 275 (280)
T ss_dssp --CHH-HHHHHHHHCGGGGGGSCCBTTBCSSCBCHHHHHHHHHHHHSGGGTTCSSCEEEEST
T ss_pred --chh-hhhhhhhcCchhhhhhhhcccCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 211 11111111000 11111111 11247899999999999886443 3578888765
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=146.81 Aligned_cols=220 Identities=9% Similarity=0.012 Sum_probs=143.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|++++ .+|+++.|... ++.+... ....++.++.+|++.
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~------~~~~~~~---------~~~~~~~~~~~D~~d----- 69 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAG-ATVAIADLDVM------AAQAVVA---------GLENGGFAVEVDVTK----- 69 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHH------HHHHHHH---------TCTTCCEEEECCTTC-----
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHH------HHHHHHH---------HHhcCCeEEEEeCCC-----
Confidence 45789999999999999999999764 68888888521 2222211 112367788899874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhcc----CC-CccEEEEecc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSFL----NK-IKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~~----~~-~k~~~~vST~ 458 (958)
.+....+.+ .+|+|||||+..... . .++...++|+.|+.++++.+.. .+ ..+++++||.
T Consensus 70 --~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 147 (263)
T 3ak4_A 70 --RASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASL 147 (263)
T ss_dssp --HHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCG
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 355555544 799999999975431 1 2345678999999999887653 23 4789999997
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcCh--hHH--
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNL--VDL-- 530 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~--~d~-- 530 (958)
..+... .....|+.||+..|.+.+..+ ..|++++++|||.+.++........ .+.
T Consensus 148 ~~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~ 210 (263)
T 3ak4_A 148 AAKVGA-----------------PLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGM 210 (263)
T ss_dssp GGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTS
T ss_pred ccccCC-----------------CCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhcccccccccc
Confidence 764311 123479999999999887643 3599999999999987531100000 000
Q ss_pred -HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCC
Q psy4557 531 -NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTN 583 (958)
Q Consensus 531 -~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~ 583 (958)
......... ...|. ..+..++++|++++.++... ...+.+|++....
T Consensus 211 ~~~~~~~~~~--~~~p~----~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 260 (263)
T 3ak4_A 211 TPEAVRAEYV--SLTPL----GRIEEPEDVADVVVFLASDAARFMTGQGINVTGGV 260 (263)
T ss_dssp CHHHHHHHHH--HTCTT----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred CcHHHHHHHH--hcCCC----CCCcCHHHHHHHHHHHhCccccCCCCCEEEECcCE
Confidence 001111111 11231 24788999999999988653 2357889887653
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=8e-14 Score=171.40 Aligned_cols=176 Identities=19% Similarity=0.177 Sum_probs=128.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+..+.+.. ....+.++.+|+++.+++.++++..
T Consensus 7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--- 83 (699)
T 1z45_A 7 SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY--- 83 (699)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS---
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhC---
Confidence 346789999999999999999999999999999999875432221122211 1234667889999999888777642
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-----------
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP----------- 859 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~----------- 859 (958)
++|+||||||....... .+.....+++|+.|+..+++++.. . +.++||++||.+..-.
T Consensus 84 --~~D~Vih~A~~~~~~~~----~~~~~~~~~~Nv~gt~~ll~a~~~----~-~~~~iV~~SS~~vyg~~~~~~~~~~~~ 152 (699)
T 1z45_A 84 --KIDSVIHFAGLKAVGES----TQIPLRYYHNNILGTVVLLELMQQ----Y-NVSKFVFSSSATVYGDATRFPNMIPIP 152 (699)
T ss_dssp --CCCEEEECCSCCCHHHH----HHSHHHHHHHHHHHHHHHHHHHHH----H-TCCEEEEEEEGGGGCCGGGSTTCCSBC
T ss_pred --CCCEEEECCcccCcCcc----ccCHHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEECcHHHhCCCccccccCCcc
Confidence 79999999997643211 223456899999999988776532 2 3479999999764311
Q ss_pred ----CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCC
Q psy4557 860 ----FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTE 902 (958)
Q Consensus 860 ----~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~ 902 (958)
......|+.||++.+.+++.++.+. ..|+++.++.|+.+.-+
T Consensus 153 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~g~~~~ilR~~~vyG~ 198 (699)
T 1z45_A 153 EECPLGPTNPYGHTKYAIENILNDLYNSD-KKSWKFAILRYFNPIGA 198 (699)
T ss_dssp TTSCCCCCSHHHHHHHHHHHHHHHHHHHS-TTSCEEEEEEECEEECC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHhc-cCCCcEEEEEeccccCC
Confidence 1234689999999999999998876 46899999999877543
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-13 Score=147.51 Aligned_cols=216 Identities=13% Similarity=0.118 Sum_probs=141.9
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||||+||.+++++|+++ +.+|+++.|... ..+.+.+.+.. ...++.++.+|++.
T Consensus 43 ~~k~vlITGasggIG~~la~~L~~~-G~~V~~~~r~~~---~~~~~~~~l~~---------~~~~~~~~~~Dl~d----- 104 (285)
T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKS-VSHVICISRTQK---SCDSVVDEIKS---------FGYESSGYAGDVSK----- 104 (285)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTT-SSEEEEEESSHH---HHHHHHHHHHT---------TTCCEEEEECCTTC-----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHc-CCEEEEEcCCHH---HHHHHHHHHHh---------cCCceeEEECCCCC-----
Confidence 5678999999999999999999876 478888766422 12222222211 13478889999874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
.+....+. ..+|+|||||+..... ..+.....+|+.|+.++++.+. +.+..+|+++||.+
T Consensus 105 --~~~v~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~ 182 (285)
T 2c07_A 105 --KEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIV 182 (285)
T ss_dssp --HHHHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred --HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChh
Confidence 34455443 3689999999975421 1234567899999888877664 33457999999986
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...|.+++..+ ..|++++++|||.+.++..... . .. +.
T Consensus 183 ~~~~~-----------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~-~~----~~ 239 (285)
T 2c07_A 183 GLTGN-----------------VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI-S-EQ----IK 239 (285)
T ss_dssp HHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C-C-HH----HH
T ss_pred hccCC-----------------CCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhc-C-HH----HH
Confidence 54211 113469999999998887643 3599999999999987643221 1 11 11
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
... ....|. ..+..++++|++++.++.... ..+.++++...
T Consensus 240 ~~~--~~~~~~----~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG 282 (285)
T 2c07_A 240 KNI--ISNIPA----GRMGTPEEVANLACFLSSDKSGYINGRVFVIDGG 282 (285)
T ss_dssp HHH--HTTCTT----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHH--HhhCCC----CCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCC
Confidence 111 122232 236889999999999886532 25778888654
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-14 Score=169.53 Aligned_cols=204 Identities=10% Similarity=0.090 Sum_probs=146.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHc-CCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHH-HHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTL-GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEND-VKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~-Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~-v~~~~~~~~~~~ 791 (958)
+++|+++||||+|+||.+++++|+++ |++|++++|+.++++++. ...++.++.+|+++.++ +.++++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~-----~~~~v~~v~~Dl~d~~~~~~~~~~------ 381 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-----NHPHFHFVEGDISIHSEWIEYHVK------ 381 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGT-----TCTTEEEEECCTTTCHHHHHHHHH------
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhc-----cCCceEEEECCCCCcHHHHHHhhc------
Confidence 46789999999999999999999998 899999999876543221 12467888999998754 444443
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC-----------
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF----------- 860 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~----------- 860 (958)
++|++|||||...... ..+.++..+++|+.|+..+++++.. . + +++|++||.+..-..
T Consensus 382 -~~D~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~gt~~ll~aa~~----~-~-~r~V~~SS~~vyg~~~~~~~~E~~~~ 450 (660)
T 1z7e_A 382 -KCDVVLPLVAIATPIE----YTRNPLRVFELDFEENLRIIRYCVK----Y-R-KRIIFPSTSEVYGMCSDKYFDEDHSN 450 (660)
T ss_dssp -HCSEEEECCCCCCTHH----HHHSHHHHHHHHTHHHHHHHHHHHH----T-T-CEEEEECCGGGGBTCCSSSBCTTTCC
T ss_pred -CCCEEEECceecCccc----cccCHHHHHHhhhHHHHHHHHHHHH----h-C-CEEEEEecHHHcCCCCCcccCCCccc
Confidence 5899999999764321 2345678999999999988887743 2 3 799999997654211
Q ss_pred -------CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-------CC--hhhhhhhc------c
Q psy4557 861 -------AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-------TD--RDVVDKYD------I 918 (958)
Q Consensus 861 -------~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-------~~--~~~~~~~~------~ 918 (958)
.....|+.||++.+.+++.++.+. |++++++.||.+..+..... .. ........ .
T Consensus 451 ~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 527 (660)
T 1z7e_A 451 LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE---GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKL 527 (660)
T ss_dssp EEECCTTCTTHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEE
T ss_pred cccCcccCCCCCcHHHHHHHHHHHHHHHHHc---CCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEE
Confidence 123379999999999999998775 89999999999988764210 00 01111100 0
Q ss_pred c----cCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 919 S----KAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 919 ~----~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
. ....++.++|+|+++++++..+.
T Consensus 528 ~g~g~~~~~~i~v~Dva~ai~~~l~~~~ 555 (660)
T 1z7e_A 528 IDGGKQKRCFTDIRDGIEALYRIIENAG 555 (660)
T ss_dssp EGGGCCEEECEEHHHHHHHHHHHHHCGG
T ss_pred eCCCCeEEEEEEHHHHHHHHHHHHhCcc
Confidence 0 01135679999999999887653
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=145.34 Aligned_cols=218 Identities=13% Similarity=0.074 Sum_probs=141.7
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|++++ .+|+++.|.... +.+.+.+ .+ .++.+|++.
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~----~~~~~~~-------------~~-~~~~~D~~~----- 60 (256)
T 2d1y_A 5 AGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEG----KEVAEAI-------------GG-AFFQVDLED----- 60 (256)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTH----HHHHHHH-------------TC-EEEECCTTC-----
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChhH----HHHHHHh-------------hC-CEEEeeCCC-----
Confidence 35689999999999999999999874 688888886543 1221111 13 677889874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
.+....+. ..+|++||||+..... . .++....+|+.|+.++++.+. +.+..+++++||.+
T Consensus 61 --~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~ 138 (256)
T 2d1y_A 61 --ERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQ 138 (256)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 34444443 3789999999975431 1 234567899999999988764 23457999999976
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcC-hhHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWN-LVDLNLYI 534 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n-~~d~~~~l 534 (958)
.+... .....|+.||+..|.+.+..+ ..|+++++++||.+.++....... ... ....
T Consensus 139 ~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~-~~~~ 200 (256)
T 2d1y_A 139 GLFAE-----------------QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPD-PERT 200 (256)
T ss_dssp GTSBC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC---------
T ss_pred ccCCC-----------------CCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccC-CHHH
Confidence 54211 112479999999999887643 358999999999987542100000 000 0000
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPI 585 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~ 585 (958)
... . ....| ...+..++++|++++.++... ...+.++++.....+
T Consensus 201 ~~~-~-~~~~~----~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG~~~ 247 (256)
T 2d1y_A 201 RRD-W-EDLHA----LRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGMTA 247 (256)
T ss_dssp CHH-H-HTTST----TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHH-H-HhcCC----CCCCcCHHHHHHHHHHHhCchhcCCCCCEEEECCCccc
Confidence 000 0 01112 235788999999999987654 235788998876443
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=150.01 Aligned_cols=225 Identities=16% Similarity=0.122 Sum_probs=146.5
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++++||||||+|+||.+++++|++++ .+|++..|... ++.+... ....++.++.+|++.
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~~------~~~~~~~---------~~~~~~~~~~~Dl~d---- 73 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRG-ATVIMAVRDTR------KGEAAAR---------TMAGQVEVRELDLQD---- 73 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESCHH------HHHHHHT---------TSSSEEEEEECCTTC----
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEECCHH------HHHHHHH---------HhcCCeeEEEcCCCC----
Confidence 356899999999999999999999774 68988888532 2222211 123578899999874
Q ss_pred CCcHHHHHHHhc---ccCEEEEcccccCc-----ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCC
Q psy4557 397 LKNQDEYVSLSY---EIDMIIHAAAFVNL-----ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENF 468 (958)
Q Consensus 397 L~~~~~~~~l~~---~vd~IiH~AA~v~~-----~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~ 468 (958)
.+....+.+ .+|++||||+.... ...++..+.+|+.|+.++++.+.....++++++||.+.+......
T Consensus 74 ---~~~v~~~~~~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~- 149 (291)
T 3rd5_A 74 ---LSSVRRFADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINL- 149 (291)
T ss_dssp ---HHHHHHHHHTCCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCS-
T ss_pred ---HHHHHHHHHhcCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCc-
Confidence 456666665 67999999997542 233556789999999999999887666799999998876432110
Q ss_pred cccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCC--CCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhC
Q psy4557 469 QEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMG--LPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLG 542 (958)
Q Consensus 469 ~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~g--lp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g 542 (958)
++. .....+..+...|+.||...+.+.+..+ ..| +.+..++||.|..+..... ...+...+.+
T Consensus 150 -~~~--~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~--~~~~~~~~~~------ 218 (291)
T 3rd5_A 150 -EDL--NWRSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGAS--GRKLGDALMS------ 218 (291)
T ss_dssp -SCT--TCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC----------------------
T ss_pred -ccc--cccccCCCCcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCcccccccc--chHHHHHHHH------
Confidence 000 0001111234579999999999887532 346 9999999999965432111 0011000000
Q ss_pred CcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEec
Q psy4557 543 YAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFI 580 (958)
Q Consensus 543 ~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~ 580 (958)
.| ...-..+.+.+|++++.++..+...|.++++.
T Consensus 219 -~~---~~~~~~~~~~~A~~~~~l~~~~~~~G~~~~vd 252 (291)
T 3rd5_A 219 -AA---TRVVATDADFGARQTLYAASQDLPGDSFVGPR 252 (291)
T ss_dssp ----------CHHHHHHHHHHHHHHHSCCCTTCEEEET
T ss_pred -HH---HHHHhCCHHHHHHHHHHHHcCCCCCCceeCCc
Confidence 11 11223568999999999987765567777764
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-13 Score=143.64 Aligned_cols=218 Identities=14% Similarity=0.036 Sum_probs=144.7
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEe-ccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCP-VRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~cl-vR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++||||||+|+||.+++++|++++ .+|++. .|... ..+.+.+.+. ....++.++.+|++.
T Consensus 4 ~k~vlVTGas~gIG~aia~~l~~~G-~~vv~~~~r~~~---~~~~~~~~~~---------~~~~~~~~~~~Dv~~----- 65 (258)
T 3oid_A 4 NKCALVTGSSRGVGKAAAIRLAENG-YNIVINYARSKK---AALETAEEIE---------KLGVKVLVVKANVGQ----- 65 (258)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSCHH---HHHHHHHHHH---------TTTCCEEEEECCTTC-----
T ss_pred CCEEEEecCCchHHHHHHHHHHHCC-CEEEEEcCCCHH---HHHHHHHHHH---------hcCCcEEEEEcCCCC-----
Confidence 4689999999999999999999764 666665 55422 1222222221 123578899999874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
.+....+. ..+|++||||+..... .+ ++...++|+.|+.++++.+. +.+..+++++||.+
T Consensus 66 --~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~ 143 (258)
T 3oid_A 66 --PAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLG 143 (258)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGG
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchh
Confidence 34444443 3679999999854321 12 33467899999999988773 34456899999977
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...+.+.+..+ .+|+++..++||.|..+.........++...+
T Consensus 144 ~~~~~-----------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~- 205 (258)
T 3oid_A 144 SIRYL-----------------ENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDA- 205 (258)
T ss_dssp GTSBC-----------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHH-
T ss_pred hCCCC-----------------CCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHH-
Confidence 64311 123579999999999987633 35899999999999876533222222222111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN 583 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~ 583 (958)
.. ..|. -.+..++++|++++.++.... -.|.++++....
T Consensus 206 ---~~--~~p~----~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG~ 246 (258)
T 3oid_A 206 ---RQ--NTPA----GRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGR 246 (258)
T ss_dssp ---HH--HCTT----SSCBCHHHHHHHHHHHTSSTTTTCCSCEEEESTTG
T ss_pred ---Hh--cCCC----CCCcCHHHHHHHHHHHhCcccCCccCCEEEECCCc
Confidence 11 1231 235788999999999886542 357888887643
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=157.44 Aligned_cols=201 Identities=16% Similarity=0.166 Sum_probs=139.8
Q ss_pred EEEEEcCCchHHHHHHHHHHHcC-CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
+++||||+|+||++++++|+++| +.|++++|+..... . ..+... . +.+|+++.+.++++++.. .++++|+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~-~~~~~~--~---~~~d~~~~~~~~~~~~~~--~~~~~d~ 71 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-F-VNLVDL--N---IADYMDKEDFLIQIMAGE--EFGDVEA 71 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG-G-HHHHTS--C---CSEEEEHHHHHHHHHTTC--CCSSCCE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch-h-hhcCcc--e---eccccccHHHHHHHHhcc--ccCCCcE
Confidence 38999999999999999999999 99999999765421 0 112211 1 567998887776655411 0247999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC-----------CChh
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA-----------GLAV 865 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~-----------~~~~ 865 (958)
+|||||.... +.++++.++++|+.|+..+++++.+. +. ++|++||.+..-..+ ....
T Consensus 72 vi~~a~~~~~------~~~~~~~~~~~n~~~~~~l~~a~~~~-----~~-~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~ 139 (310)
T 1eq2_A 72 IFHEGACSST------TEWDGKYMMDNNYQYSKELLHYCLER-----EI-PFLYASSAATYGGRTSDFIESREYEKPLNV 139 (310)
T ss_dssp EEECCSCCCT------TCCCHHHHHHHTHHHHHHHHHHHHHH-----TC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSH
T ss_pred EEECcccccC------cccCHHHHHHHHHHHHHHHHHHHHHc-----CC-eEEEEeeHHHhCCCCCCCCCCCCCCCCCCh
Confidence 9999997643 22346789999999999999887542 23 899999986532221 2567
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC---CC--hhhhhhh------cc----cc-CCCCCCHHH
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS---TD--RDVVDKY------DI----SK-AVPVLTTKE 929 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~---~~--~~~~~~~------~~----~~-~~~~~~p~~ 929 (958)
|+.+|++.+.+.+.++.+ .|++++++.||.+..+..... .. ....... .. .. ...++..+|
T Consensus 140 Y~~sK~~~e~~~~~~~~~---~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~D 216 (310)
T 1eq2_A 140 YGYSKFLFDEYVRQILPE---ANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGD 216 (310)
T ss_dssp HHHHHHHHHHHHHHHGGG---CSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHH
T ss_pred hHHHHHHHHHHHHHHHHH---cCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHH
Confidence 999999999999988765 489999999999988753210 00 0000000 00 01 223467899
Q ss_pred HHHHHHHHhcCCC
Q psy4557 930 ISQSIIFALLQPS 942 (958)
Q Consensus 930 ia~~i~~~l~~~~ 942 (958)
+|++++.++..+.
T Consensus 217 va~~~~~~~~~~~ 229 (310)
T 1eq2_A 217 VADVNLWFLENGV 229 (310)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999887654
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=148.27 Aligned_cols=218 Identities=11% Similarity=0.057 Sum_probs=144.5
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++++||||||+|+||.+++++|++++ .+|+++.|.... +.+.+.+. ....++.++.+|++.+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~----~~~~~~~~---------~~~~~~~~~~~Dv~d~--- 91 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARAG-AHVLAWGRTDGV----KEVADEIA---------DGGGSAEAVVADLADL--- 91 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTHH----HHHHHHHH---------TTTCEEEEEECCTTCH---
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCHHHH----HHHHHHHH---------hcCCcEEEEEecCCCH---
Confidence 357899999999999999999999764 678777764221 22222111 1235788899998753
Q ss_pred CCcHHHHHHHh------cccCEEEEcccccCccc----C---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 397 LKNQDEYVSLS------YEIDMIIHAAAFVNLIL----P---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 397 L~~~~~~~~l~------~~vd~IiH~AA~v~~~~----~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
+....+. ..+|++||||+...... + ++...++|+.|+.++++.+. +.+..+++++||..
T Consensus 92 ----~~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~ 167 (273)
T 3uf0_A 92 ----EGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASML 167 (273)
T ss_dssp ----HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred ----HHHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchH
Confidence 3333332 37999999999764321 2 34567899999999988763 23446899999987
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...+.+.+..+ .+|+++..++||.|.++.........+....+.
T Consensus 168 ~~~~~-----------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~ 230 (273)
T 3uf0_A 168 SFQGG-----------------RNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEIT 230 (273)
T ss_dssp GTSCC-----------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHH
T ss_pred hcCCC-----------------CCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHH
Confidence 65321 123479999999999887633 369999999999998764221111111111111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
. ..|. -.+..++++|++++.++... .-.|+++++...
T Consensus 231 ----~--~~p~----~r~~~pedva~~v~~L~s~~a~~itG~~i~vdGG 269 (273)
T 3uf0_A 231 ----A--RIPA----GRWATPEDMVGPAVFLASDAASYVHGQVLAVDGG 269 (273)
T ss_dssp ----H--HSTT----SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----h--cCCC----CCCCCHHHHHHHHHHHhCchhcCCcCCEEEECcC
Confidence 1 1231 23567889999999988653 235788888754
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=151.34 Aligned_cols=217 Identities=11% Similarity=0.033 Sum_probs=130.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.+++||||||+|+||.+++++|+++ +.+|++..|... ..+.+.+.+...+ ...++.++.+|++.
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~-G~~Vv~~~r~~~---~~~~~~~~l~~~~-------~~~~~~~~~~Dl~~----- 70 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQ-GCKVAIADIRQD---SIDKALATLEAEG-------SGPEVMGVQLDVAS----- 70 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHT-TCEEEEEESCHH---HHHHHHHHHHHHT-------CGGGEEEEECCTTC-----
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHC-CCEEEEEECCHH---HHHHHHHHHHhcC-------CCCeEEEEECCCCC-----
Confidence 4578999999999999999999986 468888888532 2222322222211 12378889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccC----------CCccEE
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLN----------KIKSFH 453 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~----------~~k~~~ 453 (958)
.+.+..+.+ .+|++||||+..... ..++....+|+.|+.++++.+... +..+|+
T Consensus 71 --~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV 148 (319)
T 3ioy_A 71 --REGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVV 148 (319)
T ss_dssp --HHHHHHHHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEE
T ss_pred --HHHHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEE
Confidence 355555543 679999999965321 123457789999999998876432 235699
Q ss_pred EEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHH----HHhhCCCCEEEEecCceeccCCCCCcChhH
Q psy4557 454 YVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVL----NAGQMGLPVSIVRCGNIGGSLEFKNWNLVD 529 (958)
Q Consensus 454 ~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~----~a~~~glp~~I~R~g~i~G~~~~g~~n~~d 529 (958)
++||.+.+... .....|+.||...+.+.+ +....|+.+++++||.|.++.........+
T Consensus 149 ~isS~a~~~~~-----------------~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 211 (319)
T 3ioy_A 149 NTASMAAFLAA-----------------GSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPD 211 (319)
T ss_dssp EECCGGGTCCC-----------------SSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC------------
T ss_pred EecccccccCC-----------------CCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCch
Confidence 99998765321 112479999995555554 445569999999999997654322111111
Q ss_pred HHHHHHHHHHHhCCcCCCCCc-CCcccHHHHHHHHHHHhcCc
Q psy4557 530 LNLYILKAITRLGYAPDIDWY-LEFTPVDFLTKSLVQLTTNV 570 (958)
Q Consensus 530 ~~~~l~~~~~~~g~~P~~~~~-~~~~pVD~va~aiv~l~~~~ 570 (958)
.+........ ....+..... ...++++.+|++++.+....
T Consensus 212 ~~~~~~~~~~-~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~ 252 (319)
T 3ioy_A 212 ALKGEVKPVD-KTAVERLAGVHEFGMEPDVIGARVIEAMKAN 252 (319)
T ss_dssp ------------------CCGGGSSBCHHHHHHHHHHHHHTT
T ss_pred hhcccccchh-HHHHHHHHHhhhcCCCHHHHHHHHHHHHHcC
Confidence 1111000000 0011111111 12378999999999987653
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=145.75 Aligned_cols=217 Identities=14% Similarity=0.058 Sum_probs=144.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|+++ +.+|+++.|...... .+.+.+..+ ..++.++.+|++.
T Consensus 33 ~~k~vlITGasggIG~~la~~L~~~-G~~V~~~~r~~~~~~---~~~~~~~~~---------~~~~~~~~~Dl~~----- 94 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWAVAEAYAQA-GADVAIWYNSHPADE---KAEHLQKTY---------GVHSKAYKCNISD----- 94 (279)
T ss_dssp TTCEEEETTTTSSHHHHHHHHHHHH-TCEEEEEESSSCCHH---HHHHHHHHH---------CSCEEEEECCTTC-----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHH---HHHHHHHhc---------CCcceEEEeecCC-----
Confidence 4678999999999999999999986 468988888754322 222222211 2478889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCc------ccC---hHHHHhhhHHH----HHHHHHhhccCCCccEEEEec
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNL------ILP---YNALYKSNVLA----TKNLIEFSFLNKIKSFHYVST 457 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~------~~~---~~~~~~~NV~g----t~~ll~~a~~~~~k~~~~vST 457 (958)
.+....+.. .+|+|||+|+.... ..+ +.....+|+.| ++++++.+.+.+.++|+++||
T Consensus 95 --~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS 172 (279)
T 3ctm_A 95 --PKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSS 172 (279)
T ss_dssp --HHHHHHHHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECc
Confidence 344444433 49999999997543 112 23467789999 566777766556689999999
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
.+.+... .......|+.||+..|.+++..+ ..| ++++++||.+..+... .. ..+....
T Consensus 173 ~~~~~~~---------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~-~~-~~~~~~~ 234 (279)
T 3ctm_A 173 ISGKIVN---------------IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITD-FA-SKDMKAK 234 (279)
T ss_dssp CTTSCC------------------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTS-SC-CHHHHHH
T ss_pred hHhccCC---------------CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCcccccc-cc-ChHHHHH
Confidence 8754210 00123479999999999987643 247 9999999999776431 11 1122111
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
+. . ..|. ..+..++++|++++.++... ...+.++++...
T Consensus 235 ~~----~--~~p~----~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG 275 (279)
T 3ctm_A 235 WW----Q--LTPL----GREGLTQELVGGYLYLASNASTFTTGSDVVIDGG 275 (279)
T ss_dssp HH----H--HSTT----CSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HH----H--hCCc----cCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 11 1 1231 23678899999999988653 235778888764
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-13 Score=145.45 Aligned_cols=216 Identities=12% Similarity=0.089 Sum_probs=140.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++++|||||+|+||.+++++|+++ +.+|+++.|...... ...+ +...++.++.+|++.
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~---~~~~------------~~~~~~~~~~~Dv~~----- 64 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAAVTRMLAQE-GATVLGLDLKPPAGE---EPAA------------ELGAAVRFRNADVTN----- 64 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESSCC---------------------------CEEEECCTTC-----
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChHHHH---HHHH------------HhCCceEEEEccCCC-----
Confidence 4578999999999999999999976 468888888654321 1111 113467888999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc-----------cChHHHHhhhHHHHHHHHHhhccC----------CC
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI-----------LPYNALYKSNVLATKNLIEFSFLN----------KI 449 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~-----------~~~~~~~~~NV~gt~~ll~~a~~~----------~~ 449 (958)
.+....+.+ .+|++||||+..... ..++...++|+.|+.++++.+... +.
T Consensus 65 --~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~ 142 (257)
T 3tpc_A 65 --EADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGER 142 (257)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCC
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCC
Confidence 344554443 799999999976321 123456789999999999877531 33
Q ss_pred ccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCc
Q psy4557 450 KSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNW 525 (958)
Q Consensus 450 k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~ 525 (958)
.+++++||.+.+... .....|+.||...+.+.+..+ .+|+++..++||.|.++...+..
T Consensus 143 g~iv~isS~~~~~~~-----------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~ 205 (257)
T 3tpc_A 143 GVIVNTASIAAFDGQ-----------------IGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMP 205 (257)
T ss_dssp EEEEEECCTHHHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC------
T ss_pred eEEEEEechhhccCC-----------------CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCC
Confidence 579999998765311 123479999999998886532 36999999999999876432110
Q ss_pred ChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCC
Q psy4557 526 NLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNP 584 (958)
Q Consensus 526 n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~ 584 (958)
.+ ..+. . ....|. .-.+..++++|++++.++....-.|+++++.....
T Consensus 206 --~~----~~~~-~-~~~~p~---~~r~~~~~dva~~v~~l~s~~~itG~~i~vdGG~~ 253 (257)
T 3tpc_A 206 --QD----VQDA-L-AASVPF---PPRLGRAEEYAALVKHICENTMLNGEVIRLDGALR 253 (257)
T ss_dssp ----------------CCSSS---SCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTCC
T ss_pred --HH----HHHH-H-HhcCCC---CCCCCCHHHHHHHHHHHcccCCcCCcEEEECCCcc
Confidence 01 0010 0 111221 12467889999999998866555688888876543
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-14 Score=153.94 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=134.2
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
+++||||+|+||++++++|+++|++|++++|. .+|+++.+++.++++.. ++|++
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~---------------------~~D~~d~~~~~~~~~~~-----~~d~v 60 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK---------------------LLDITNISQVQQVVQEI-----RPHII 60 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT---------------------TSCTTCHHHHHHHHHHH-----CCSEE
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc---------------------ccCCCCHHHHHHHHHhc-----CCCEE
Confidence 79999999999999999999999999999982 27999999988888765 68999
Q ss_pred EEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-----------CCCChhh
Q psy4557 798 VNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP-----------FAGLAVY 866 (958)
Q Consensus 798 InnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~-----------~~~~~~Y 866 (958)
|||||...... ..+.++..+++|+.|+..+++++.+. +.++|++||....-+ ......|
T Consensus 61 i~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y 130 (287)
T 3sc6_A 61 IHCAAYTKVDQ----AEKERDLAYVINAIGARNVAVASQLV------GAKLVYISTDYVFQGDRPEGYDEFHNPAPINIY 130 (287)
T ss_dssp EECCCCCCHHH----HTTCHHHHHHHHTHHHHHHHHHHHHH------TCEEEEEEEGGGSCCCCSSCBCTTSCCCCCSHH
T ss_pred EECCcccChHH----HhcCHHHHHHHHHHHHHHHHHHHHHc------CCeEEEEchhhhcCCCCCCCCCCCCCCCCCCHH
Confidence 99999864221 12457889999999999999887542 248999999865422 1235689
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh------cc--ccCCCCCCHHHHHHHHHHHh
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY------DI--SKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~------~~--~~~~~~~~p~~ia~~i~~~l 938 (958)
+.+|.+.+.+++.++. +++.+.||.+..+..... ........ .. .....++.++|+|+++++++
T Consensus 131 ~~sK~~~E~~~~~~~~-------~~~ilR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~ 202 (287)
T 3sc6_A 131 GASKYAGEQFVKELHN-------KYFIVRTSWLYGKYGNNF-VKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLI 202 (287)
T ss_dssp HHHHHHHHHHHHHHCS-------SEEEEEECSEECSSSCCH-HHHHHHHHTTCSEEEEECSCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-------CcEEEeeeeecCCCCCcH-HHHHHHHHHcCCCeEeecCcccCceEHHHHHHHHHHHH
Confidence 9999999999887643 457899999877642211 01111100 00 01123567999999999988
Q ss_pred cCCC
Q psy4557 939 LQPS 942 (958)
Q Consensus 939 ~~~~ 942 (958)
.++.
T Consensus 203 ~~~~ 206 (287)
T 3sc6_A 203 HTSL 206 (287)
T ss_dssp TSCC
T ss_pred hCCC
Confidence 8766
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=152.44 Aligned_cols=192 Identities=11% Similarity=0.073 Sum_probs=140.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
++|+++||||+|+||.+++++|+++|++|+++.|+. .+|+++.+++.++++.. ++
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~--------------------~~D~~d~~~~~~~~~~~-----~~ 56 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD--------------------ELNLLDSRAVHDFFASE-----RI 56 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT--------------------TCCTTCHHHHHHHHHHH-----CC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc--------------------cCCccCHHHHHHHHHhc-----CC
Confidence 467899999999999999999999999999887762 26999999888777654 68
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC---------------
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--------------- 859 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~--------------- 859 (958)
|++|||||..... ....+.++..+++|+.++..+++++.. . +.+++|++||.+..-.
T Consensus 57 d~vih~a~~~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~ 128 (321)
T 1e6u_A 57 DQVYLAAAKVGGI---VANNTYPADFIYQNMMIESNIIHAAHQ----N-DVNKLLFLGSSCIYPKLAKQPMAESELLQGT 128 (321)
T ss_dssp SEEEECCCCCCCH---HHHHHCHHHHHHHHHHHHHHHHHHHHH----T-TCCEEEEECCGGGSCTTCCSSBCGGGTTSSC
T ss_pred CEEEEcCeecCCc---chhhhCHHHHHHHHHHHHHHHHHHHHH----h-CCCeEEEEccHHHcCCCCCCCcCccccccCC
Confidence 9999999975321 112345678999999999998887754 2 3469999999865421
Q ss_pred -CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC---C--hhhhhhh---------cc--cc--
Q psy4557 860 -FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST---D--RDVVDKY---------DI--SK-- 920 (958)
Q Consensus 860 -~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~---~--~~~~~~~---------~~--~~-- 920 (958)
.|....|+.+|.+.+.+.+.++.+. |++++++.||.+..+...... . ....... .. ..
T Consensus 129 ~~p~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g 205 (321)
T 1e6u_A 129 LEPTNEPYAIAKIAGIKLCESYNRQY---GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSG 205 (321)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCS
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHh---CCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCC
Confidence 1123589999999999999998775 899999999999877543110 0 0111110 00 00
Q ss_pred --CCCCCCHHHHHHHHHHHhcCCC
Q psy4557 921 --AVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 921 --~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
...++..+|+|++++.++..+.
T Consensus 206 ~~~~~~i~v~Dva~~~~~~~~~~~ 229 (321)
T 1e6u_A 206 TPMREFLHVDDMAAASIHVMELAH 229 (321)
T ss_dssp CCEECEEEHHHHHHHHHHHHHSCH
T ss_pred CEEEEeEEHHHHHHHHHHHHhCcc
Confidence 1134578999999999887654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-13 Score=143.08 Aligned_cols=223 Identities=13% Similarity=0.138 Sum_probs=148.5
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.+++++|||||+|+||.+++++|+++ +.+|++..|... ..+.+.+.+.. ...++.++.+|++.
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~---~~~~~~~~~~~---------~~~~~~~~~~Dv~d---- 72 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKA-GASVVVTDLKSE---GAEAVAAAIRQ---------AGGKAIGLECNVTD---- 72 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHH-TCEEEEEESSHH---HHHHHHHHHHH---------TTCCEEEEECCTTC----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHH---HHHHHHHHHHh---------cCCcEEEEECCCCC----
Confidence 35679999999999999999999976 467888877432 22223222221 23578899999874
Q ss_pred CCcHHHHHHHhc-------ccCEEEEcccccCc---ccC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 397 LKNQDEYVSLSY-------EIDMIIHAAAFVNL---ILP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 397 L~~~~~~~~l~~-------~vd~IiH~AA~v~~---~~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
.+....+.+ .+|++||||+.... ..+ ++...++|+.|+.++++.+. +.+..+++++||.+
T Consensus 73 ---~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~ 149 (256)
T 3gaf_A 73 ---EQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMA 149 (256)
T ss_dssp ---HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGG
T ss_pred ---HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHH
Confidence 344444433 79999999997543 122 34567899999999998763 34446899999987
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...|.+.+..+ .+|+++..++||.|..+...... ..+. .
T Consensus 150 ~~~~~-----------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~-~~~~----~ 207 (256)
T 3gaf_A 150 GENTN-----------------VRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVL-TPEI----E 207 (256)
T ss_dssp GTCCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHC-CHHH----H
T ss_pred HcCCC-----------------CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhcc-CHHH----H
Confidence 64311 123479999999999887532 35999999999998765311100 0111 1
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCCCH
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPIHI 587 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~ 587 (958)
+.. ....| ...+..++++|++++.++... .-.|+++++......++
T Consensus 208 ~~~--~~~~p----~~r~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 208 RAM--LKHTP----LGRLGEAQDIANAALFLCSPAAAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp HHH--HTTCT----TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCC-
T ss_pred HHH--HhcCC----CCCCCCHHHHHHHHHHHcCCcccCccCCEEEECCCccccC
Confidence 111 11223 134678999999999988643 23588999987655543
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.50 E-value=5e-13 Score=143.44 Aligned_cols=222 Identities=13% Similarity=0.112 Sum_probs=145.8
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++++||||||+|+||.+++++|++++ .+|++..|... ..+.+.+.+ .....++.++.+|++.
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~---~~~~~~~~~---------~~~~~~~~~~~~Dv~~---- 66 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEG-ARVVITGRTKE---KLEEAKLEI---------EQFPGQILTVQMDVRN---- 66 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHH---------CCSTTCEEEEECCTTC----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHH---HHHHHHHHH---------HhcCCcEEEEEccCCC----
Confidence 356789999999999999999999774 68888887532 122222211 1224578899999874
Q ss_pred CCcHHHHHHHhc-------ccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhh-----ccCCCccEEEEec
Q psy4557 397 LKNQDEYVSLSY-------EIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFS-----FLNKIKSFHYVST 457 (958)
Q Consensus 397 L~~~~~~~~l~~-------~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a-----~~~~~k~~~~vST 457 (958)
.+....+.+ .+|++||||+..... . .++...++|+.|+.++++.+ ...+..+++++||
T Consensus 67 ---~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS 143 (257)
T 3imf_A 67 ---TDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVA 143 (257)
T ss_dssp ---HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred ---HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECc
Confidence 344444433 789999999964321 1 23456789999999998876 3334468999999
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-----hCCCCEEEEecCceeccCCCCC-cChhHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-----QMGLPVSIVRCGNIGGSLEFKN-WNLVDLN 531 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-----~~glp~~I~R~g~i~G~~~~g~-~n~~d~~ 531 (958)
...+... .....|+.||...+.+.+..+ ..|+++..++||.|.++..... +...++.
T Consensus 144 ~~~~~~~-----------------~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~ 206 (257)
T 3imf_A 144 TYAWDAG-----------------PGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMA 206 (257)
T ss_dssp GGGGSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCS
T ss_pred hhhccCC-----------------CCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHH
Confidence 7654311 123479999999998886532 3499999999999987643211 1111111
Q ss_pred HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCC
Q psy4557 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPI 585 (958)
Q Consensus 532 ~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~ 585 (958)
+.. ....|. -.+...+++|++++.++.... -.|.++++.....+
T Consensus 207 ----~~~--~~~~p~----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 252 (257)
T 3imf_A 207 ----KRT--IQSVPL----GRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGGQHL 252 (257)
T ss_dssp ----HHH--HTTSTT----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTS
T ss_pred ----HHH--HhcCCC----CCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCccc
Confidence 111 112231 236788999999999886543 35788888765443
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=149.15 Aligned_cols=227 Identities=12% Similarity=0.114 Sum_probs=145.7
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++++||||||+|+||.+++++|++++ .+|+++.|.... .+.+.+.+.... . .....++.++.+|++.
T Consensus 16 l~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~---~~~~~~~l~~~~-~---~~~~~~~~~~~~D~~~---- 83 (303)
T 1yxm_A 16 LQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLER---LKSAADELQANL-P---PTKQARVIPIQCNIRN---- 83 (303)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH---HHHHHHHHHHTS-C---TTCCCCEEEEECCTTC----
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH---HHHHHHHHHhhc-c---ccCCccEEEEecCCCC----
Confidence 356789999999999999999999864 689888885321 222222221100 0 0123578899999874
Q ss_pred CCcHHHHHHHhc-------ccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhcc----CCCccEEEEecc
Q psy4557 397 LKNQDEYVSLSY-------EIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTD 458 (958)
Q Consensus 397 L~~~~~~~~l~~-------~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~ 458 (958)
.+....+.+ .+|+|||||+..... .+ +.....+|+.|+.++++.+.. .+..+++++||.
T Consensus 84 ---~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~ 160 (303)
T 1yxm_A 84 ---EEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP 160 (303)
T ss_dssp ---HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC
T ss_pred ---HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEee
Confidence 345555443 599999999954321 12 345678999999999988754 123679999997
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.++. .....|+.||...+.+.+..+ ..|++++++|||.|+|+........ ....+
T Consensus 161 ~~~~~------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~ 220 (303)
T 1yxm_A 161 TKAGF------------------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGS--WGQSF 220 (303)
T ss_dssp CTTCC------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGG--GGGGG
T ss_pred cccCC------------------CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccc--cchHH
Confidence 62221 112469999999998887543 3499999999999999842111110 00000
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNP 584 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~ 584 (958)
.... ....| ...+..++++|++++.++.... ..|.++++.....
T Consensus 221 ~~~~--~~~~p----~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG~~ 266 (303)
T 1yxm_A 221 FEGS--FQKIP----AKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRS 266 (303)
T ss_dssp GTTG--GGGST----TSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHH--HhcCc----ccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCCee
Confidence 0000 01112 1236788999999999885432 3578898876543
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-12 Score=141.69 Aligned_cols=231 Identities=10% Similarity=0.076 Sum_probs=149.1
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCC---------hhhHHHHHHHHHHHhccccccccccCceEEec
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETP---------NKTLLQRLEDIMLKYHMSLDLNNYTDRLILVK 387 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~---------~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~ 387 (958)
.++++||||||+|+||.+++++|+++ +.+|+++.|... .....+...+.+.. ...++.++.
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 80 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAAD-GADIIAVDLCDQIASVPYPLATPEELAATVKLVED---------IGSRIVARQ 80 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH---------HTCCEEEEE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEecccccccccccccchHHHHHHHHHHHh---------cCCeEEEEe
Confidence 35689999999999999999999976 467888877521 11222222222221 235889999
Q ss_pred ccCCCCCCCCCcHHHHHHHhc-------ccCEEEEcccccCcccC---hHHHHhhhHHHHHHHHHhhcc-----CCCccE
Q psy4557 388 SDLSLEMLGLKNQDEYVSLSY-------EIDMIIHAAAFVNLILP---YNALYKSNVLATKNLIEFSFL-----NKIKSF 452 (958)
Q Consensus 388 gDl~~~~lGL~~~~~~~~l~~-------~vd~IiH~AA~v~~~~~---~~~~~~~NV~gt~~ll~~a~~-----~~~k~~ 452 (958)
+|++. .+....+.+ .+|++||||+....... ++..+++|+.|+.++++.+.. ....++
T Consensus 81 ~D~~~-------~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~i 153 (278)
T 3sx2_A 81 ADVRD-------RESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSI 153 (278)
T ss_dssp CCTTC-------HHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEE
T ss_pred CCCCC-------HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEE
Confidence 99874 345555543 79999999997654333 445678999999999987643 223589
Q ss_pred EEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChh
Q psy4557 453 HYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLV 528 (958)
Q Consensus 453 ~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~ 528 (958)
+++||.+.+...... ......|+.||...+.+.+..+ ..|+++..++||.|.++....
T Consensus 154 v~isS~~~~~~~~~~-------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----- 215 (278)
T 3sx2_A 154 VLISSSAGLAGVGSA-------------DPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINN----- 215 (278)
T ss_dssp EEECCGGGTSCCCCS-------------SHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSS-----
T ss_pred EEEccHHhcCCCccC-------------CCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchh-----
Confidence 999997764321100 0112469999999999887532 458999999999998765321
Q ss_pred HHHHHHHHHHHHhCCcC-CCC--CcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 529 DLNLYILKAITRLGYAP-DID--WYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 529 d~~~~l~~~~~~~g~~P-~~~--~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.+....+.........+ ... ....+..++++|++++.++.... -.|.++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 274 (278)
T 3sx2_A 216 EFTREWLAKMAAATDTPGAMGNAMPVEVLAPEDVANAVAWLVSDQARYITGVTLPVDAG 274 (278)
T ss_dssp HHHHHHHHHHHHHCC--CTTSCSSSCSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred hhHHHHHhhccchhhhhhhhhhhcCcCcCCHHHHHHHHHHHhCcccccccCCEEeECCC
Confidence 11111111111111111 011 11467889999999999886432 35788888654
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-13 Score=144.19 Aligned_cols=219 Identities=14% Similarity=0.188 Sum_probs=144.3
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++||||||+|+||.+++++|+++ +.+|+++.|.... ..+.+.+.+ .....++.++.+|++.
T Consensus 7 ~k~vlVTGas~gIG~~~a~~l~~~-G~~v~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~~Dl~~------ 68 (264)
T 3i4f_A 7 VRHALITAGTKGLGKQVTEKLLAK-GYSVTVTYHSDTT--AMETMKETY---------KDVEERLQFVQADVTK------ 68 (264)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHH--HHHHHHHHT---------GGGGGGEEEEECCTTS------
T ss_pred cCEEEEeCCCchhHHHHHHHHHHC-CCEEEEEcCCChH--HHHHHHHHH---------HhcCCceEEEEecCCC------
Confidence 468999999999999999999977 4688877665432 222332221 1223578999999874
Q ss_pred cHHHHHHHhc-------ccCEEEEcccccCc------c---cChHHHHhhhHHHHHHHHHhh----ccCCCccEEEEecc
Q psy4557 399 NQDEYVSLSY-------EIDMIIHAAAFVNL------I---LPYNALYKSNVLATKNLIEFS----FLNKIKSFHYVSTD 458 (958)
Q Consensus 399 ~~~~~~~l~~-------~vd~IiH~AA~v~~------~---~~~~~~~~~NV~gt~~ll~~a----~~~~~k~~~~vST~ 458 (958)
.++...+.+ .+|++||||+.... . ..++...++|+.|+.++++.+ .+.+..+++++||.
T Consensus 69 -~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~ 147 (264)
T 3i4f_A 69 -KEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQ 147 (264)
T ss_dssp -HHHHHHHHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCT
T ss_pred -HHHHHHHHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 344554443 78999999993211 1 123456789999999999887 44455789999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.++... ......|+.||...+.+++..+ .+|+++.+++||.|.++...... .+.. ..
T Consensus 148 ~~~~~~~---------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~-~~ 209 (264)
T 3i4f_A 148 GADSAPG---------------WIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATI--QEAR-QL 209 (264)
T ss_dssp TGGGCCC---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCH--HHHH-HC
T ss_pred hhcccCC---------------CCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhcc--HHHH-HH
Confidence 5542110 0123579999999999887532 36999999999999887533221 1111 10
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN 583 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~ 583 (958)
.. ...| ...+..++++|++++.++.... -.|+++++....
T Consensus 210 ~~-----~~~p----~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG~ 251 (264)
T 3i4f_A 210 KE-----HNTP----IGRSGTGEDIARTISFLCEDDSDMITGTIIEVTGAV 251 (264)
T ss_dssp -----------------CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCSC
T ss_pred Hh-----hcCC----CCCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCce
Confidence 00 1112 1235788999999999886543 357889987543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.7e-13 Score=140.48 Aligned_cols=217 Identities=10% Similarity=0.049 Sum_probs=145.7
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|+++ +.+|++..|... ..+.+.+.+.. ...++.++.+|++.
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~-G~~v~~~~r~~~---~~~~~~~~~~~---------~~~~~~~~~~D~~~----- 65 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASK-GATVVGTATSQA---SAEKFENSMKE---------KGFKARGLVLNISD----- 65 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSHH---HHHHHHHHHHH---------TTCCEEEEECCTTC-----
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHH---HHHHHHHHHHh---------cCCceEEEEecCCC-----
Confidence 3578999999999999999999977 478888888532 22233332222 13578889999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEeccc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~ 459 (958)
.+....+.+ .+|++||||+..... ..++....+|+.|+.++++.+.. .+..+++++||..
T Consensus 66 --~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~ 143 (247)
T 3lyl_A 66 --IESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVV 143 (247)
T ss_dssp --HHHHHHHHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred --HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchh
Confidence 344444432 589999999976431 12345678999999999887643 3346899999976
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...+.+++..+ .+|+++..++||.+..+..... . .+. ..
T Consensus 144 ~~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~-~~~-~~-- 201 (247)
T 3lyl_A 144 GSAGN-----------------PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKL-T-DEQ-KS-- 201 (247)
T ss_dssp HHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTS-C-HHH-HH--
T ss_pred hccCC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhc-c-HHH-HH--
Confidence 54211 123479999999888886532 4599999999999987653221 1 111 11
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN 583 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~ 583 (958)
... ...| ...+..++++|++++.++.... -.|+++++....
T Consensus 202 --~~~-~~~~----~~~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~ 244 (247)
T 3lyl_A 202 --FIA-TKIP----SGQIGEPKDIAAAVAFLASEEAKYITGQTLHVNGGM 244 (247)
T ss_dssp --HHH-TTST----TCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred --HHh-hcCC----CCCCcCHHHHHHHHHHHhCCCcCCccCCEEEECCCE
Confidence 111 1223 2346789999999999886432 357899987643
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=145.92 Aligned_cols=225 Identities=13% Similarity=0.107 Sum_probs=147.7
Q ss_pred cccCceEEeccc--cchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCC
Q psy4557 317 LKYGNVLLTGVT--GYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEM 394 (958)
Q Consensus 317 ~~~~~VllTGaT--GflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~ 394 (958)
.+.++||||||+ |+||.+++++|++++ .+|++..|..... +.+.+....+ .++.++.+|++.
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G-~~V~~~~r~~~~~---~~~~~~~~~~----------~~~~~~~~Dv~~-- 75 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREG-AELAFTYVGDRFK---DRITEFAAEF----------GSELVFPCDVAD-- 75 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGH---HHHHHHHHHT----------TCCCEEECCTTC--
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcC-CCEEEEecchhhH---HHHHHHHHHc----------CCcEEEECCCCC--
Confidence 367899999999 999999999999774 6888888864322 2333322221 346788899874
Q ss_pred CCCCcHHHHHHHhc-------ccCEEEEcccccCc-------c--cC---hHHHHhhhHHHHHHHHHhhccC--CCccEE
Q psy4557 395 LGLKNQDEYVSLSY-------EIDMIIHAAAFVNL-------I--LP---YNALYKSNVLATKNLIEFSFLN--KIKSFH 453 (958)
Q Consensus 395 lGL~~~~~~~~l~~-------~vd~IiH~AA~v~~-------~--~~---~~~~~~~NV~gt~~ll~~a~~~--~~k~~~ 453 (958)
.+....+.+ .+|++||||+.... . .+ +.....+|+.|+.++++.+... +..+++
T Consensus 76 -----~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv 150 (271)
T 3ek2_A 76 -----DAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLL 150 (271)
T ss_dssp -----HHHHHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEE
T ss_pred -----HHHHHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEE
Confidence 345555543 68999999997542 1 22 3456789999999999987643 124799
Q ss_pred EEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhH
Q psy4557 454 YVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVD 529 (958)
Q Consensus 454 ~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d 529 (958)
++||.+.+... .....|+.||...+.+.+..+ ..|+.+..++||.|..+.........+
T Consensus 151 ~isS~~~~~~~-----------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 213 (271)
T 3ek2_A 151 TLSYLGAERAI-----------------PNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGK 213 (271)
T ss_dssp EEECGGGTSBC-----------------TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHH
T ss_pred EEeccccccCC-----------------CCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHH
Confidence 99997664311 123579999999999887643 459999999999998765333211111
Q ss_pred HHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCCCCCHHH
Q psy4557 530 LNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTNPIHIKT 589 (958)
Q Consensus 530 ~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~~~ 589 (958)
+....... .|- -.+...+.+|++++.++... .-.|.++++.....+.+.+
T Consensus 214 ----~~~~~~~~--~~~----~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~~~~~ 265 (271)
T 3ek2_A 214 ----ILDFVESN--SPL----KRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGG 265 (271)
T ss_dssp ----HHHHHHHH--STT----SSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGGBCCC
T ss_pred ----HHHHHHhc--CCc----CCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeeeehhh
Confidence 11111111 121 23567899999999988643 3468899998766555443
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-13 Score=144.15 Aligned_cols=224 Identities=12% Similarity=0.096 Sum_probs=141.0
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+++||||||+|+||.++++.|+++ +.+|+++.|.... ..+.+.+.+... ...++.++.+|++.
T Consensus 4 ~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~--~~~~~~~~~~~~--------~~~~~~~~~~D~~~------ 66 (260)
T 1x1t_A 4 GKVAVVTGSTSGIGLGIATALAAQ-GADIVLNGFGDAA--EIEKVRAGLAAQ--------HGVKVLYDGADLSK------ 66 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHT-TCEEEEECCSCHH--HHHHHHHHHHHH--------HTSCEEEECCCTTS------
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHc-CCEEEEEeCCcch--HHHHHHHHHHhc--------cCCcEEEEECCCCC------
Confidence 468999999999999999999976 4688888885432 022222222110 12467888999874
Q ss_pred cHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccc
Q psy4557 399 NQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSI 460 (958)
Q Consensus 399 ~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v 460 (958)
.+....+.+ .+|++||||+..... ..++....+|+.|+.++++.+. +.+..+|+++||.+.
T Consensus 67 -~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~ 145 (260)
T 1x1t_A 67 -GEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHG 145 (260)
T ss_dssp -HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHh
Confidence 344554443 799999999965421 1234567899999999988764 234579999999876
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcCh-hHH----H
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNL-VDL----N 531 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~-~d~----~ 531 (958)
+... .....|+.||...|.+.+..+ ..|+++++++||.|.++........ ... .
T Consensus 146 ~~~~-----------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~ 208 (260)
T 1x1t_A 146 LVAS-----------------ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQ 208 (260)
T ss_dssp TSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------
T ss_pred CcCC-----------------CCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCch
Confidence 5321 123479999999999887532 3589999999999987653221100 000 0
Q ss_pred HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 532 ~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
....+... ....| ...+..++++|++++.++... ...+.++++...
T Consensus 209 ~~~~~~~~-~~~~p----~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG 256 (260)
T 1x1t_A 209 ETAARELL-SEKQP----SLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256 (260)
T ss_dssp ------CH-HHHCT----TCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHh-hccCC----CCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCC
Confidence 00000000 00112 124678899999999988643 235778888654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-13 Score=146.73 Aligned_cols=238 Identities=10% Similarity=0.035 Sum_probs=149.0
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCCh---------hhHHHHHHHHHHHhccccccccccCceEEec
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPN---------KTLLQRLEDIMLKYHMSLDLNNYTDRLILVK 387 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~---------~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~ 387 (958)
.++++||||||+|+||.+++++|++++ .+|+++.|..+. ....++....+. ....++.++.
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 77 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHDIETNEYPLATSRDLEEAGLEVE---------KTGRKAYTAE 77 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHH---------HTTSCEEEEE
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcccccccccccchhhhHHHHHHHHHHH---------hcCCceEEEE
Confidence 356799999999999999999999774 688888776321 111222222221 1235788999
Q ss_pred ccCCCCCCCCCcHHHHHHHhc-------ccCEEEEcccccCcc--c---ChHHHHhhhHHHHHHHHHhhccC--CCccEE
Q psy4557 388 SDLSLEMLGLKNQDEYVSLSY-------EIDMIIHAAAFVNLI--L---PYNALYKSNVLATKNLIEFSFLN--KIKSFH 453 (958)
Q Consensus 388 gDl~~~~lGL~~~~~~~~l~~-------~vd~IiH~AA~v~~~--~---~~~~~~~~NV~gt~~ll~~a~~~--~~k~~~ 453 (958)
+|++. .+....+.+ .+|++||||+..... . .++..+.+|+.|+.++++.+... +..+++
T Consensus 78 ~D~~~-------~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv 150 (287)
T 3pxx_A 78 VDVRD-------RAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASII 150 (287)
T ss_dssp CCTTC-------HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEE
T ss_pred ccCCC-------HHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEE
Confidence 99874 344444433 799999999976432 2 24467789999999999988653 235899
Q ss_pred EEecccccCCC-CCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChh
Q psy4557 454 YVSTDSIYPST-SENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLV 528 (958)
Q Consensus 454 ~vST~~v~~~~-~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~ 528 (958)
++||.+.+... .....+. .+......|+.||...+.+.+..+ .+|+++..++||.|..+.........
T Consensus 151 ~isS~~~~~~~~~~~~~~~-------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~ 223 (287)
T 3pxx_A 151 TTGSVAGLIAAAQPPGAGG-------PQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYR 223 (287)
T ss_dssp EECCHHHHHHHHCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHHHH
T ss_pred Eeccchhcccccccccccc-------cCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccchhh
Confidence 99997765321 1111111 000123479999999999887533 34999999999999876532110000
Q ss_pred HH--------HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCC
Q psy4557 529 DL--------NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTN 583 (958)
Q Consensus 529 d~--------~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~ 583 (958)
.+ ...........+..| ..+..++++|++++.++... .-.|.++++....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG~ 283 (287)
T 3pxx_A 224 QFRPDLEAPSRADALLAFPAMQAMP-----TPYVEASDISNAVCFLASDESRYVTGLQFKVDAGA 283 (287)
T ss_dssp HHCTTSSSCCHHHHHHHGGGGCSSS-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hhccccccchhHHHHhhhhhhcccC-----CCCCCHHHHHhhHheecchhhcCCCCceEeECchh
Confidence 00 000000000111122 45788999999999988543 2357888887654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.5e-13 Score=142.09 Aligned_cols=220 Identities=17% Similarity=0.145 Sum_probs=142.4
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHH-HHhccccccccccCceEEecccCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIM-LKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~-~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
.++++||||||+|+||.++++.|++++ .+|+++.|.... .+.+.+.+ .. ...++.++.+|++.
T Consensus 19 l~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~---~~~~~~~l~~~---------~~~~~~~~~~Dl~~--- 82 (267)
T 1vl8_A 19 LRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEE---ASEAAQKLTEK---------YGVETMAFRCDVSN--- 82 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH---HHHHHHHHHHH---------HCCCEEEEECCTTC---
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH---HHHHHHHHHHh---------cCCeEEEEEcCCCC---
Confidence 356899999999999999999999864 688888885321 12222211 11 12467888999874
Q ss_pred CCCcHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEec
Q psy4557 396 GLKNQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVST 457 (958)
Q Consensus 396 GL~~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST 457 (958)
.+....+.+ .+|++||||+..... ..++....+|+.|+.++++.+. +.+..+++++||
T Consensus 83 ----~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS 158 (267)
T 1vl8_A 83 ----YEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS 158 (267)
T ss_dssp ----HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred ----HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 344444433 789999999975431 1234567899999999987763 345579999999
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
.++.. . + ......|+.||...|.+++..+ ..|+++++++||.+..+.........+
T Consensus 159 ~~~~~-~--~-------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~---- 218 (267)
T 1vl8_A 159 LTVEE-V--T-------------MPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPE---- 218 (267)
T ss_dssp GGGTC-C--C-------------SSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHH----
T ss_pred cchhc-c--C-------------CCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccChH----
Confidence 76310 0 0 0123479999999999887643 359999999999997653211000011
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
...... ...|. -.+...+.+|++++.++... .-.|.++++...
T Consensus 219 ~~~~~~--~~~p~----~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 263 (267)
T 1vl8_A 219 KLDYML--KRIPL----GRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG 263 (267)
T ss_dssp HHHHHH--HTCTT----SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHH--hhCCC----CCCcCHHHHHHHHHHHcCccccCCcCCeEEECCC
Confidence 111111 11231 13567888999999987643 235778877653
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.3e-13 Score=143.78 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=144.1
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|+++ +.+|+++.|... ..+.+.+.+.. ...++.++.+|++.
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~---~~~~~~~~l~~---------~~~~~~~~~~Dv~~----- 82 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKE-GLRVFVCARGEE---GLRTTLKELRE---------AGVEADGRTCDVRS----- 82 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHH---HHHHHHHHHHH---------TTCCEEEEECCTTC-----
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHH---HHHHHHHHHHh---------cCCceEEEECCCCC-----
Confidence 4578999999999999999999976 478888888532 12222222211 12468888999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhccC------CCccEEEEec
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSFLN------KIKSFHYVST 457 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~~~------~~k~~~~vST 457 (958)
.+....+.+ .+|++||||+..... . .++...++|+.|+.++++.+... +..+|+++||
T Consensus 83 --~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS 160 (277)
T 2rhc_B 83 --VPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAS 160 (277)
T ss_dssp --HHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECC
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECc
Confidence 344444433 699999999975321 1 23456789999999999887654 3478999999
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcCh-hHHH-
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNL-VDLN- 531 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~-~d~~- 531 (958)
.+.+... .....|+.||...|.+.+..+ ..|++++++|||.+.++........ .+..
T Consensus 161 ~~~~~~~-----------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 223 (277)
T 2rhc_B 161 TGGKQGV-----------------VHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWE 223 (277)
T ss_dssp GGGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHT
T ss_pred cccccCC-----------------CCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccc
Confidence 7654211 123479999999999887643 3589999999999986531100000 0000
Q ss_pred ---HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 532 ---LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 532 ---~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
........ ...|. ..+..++++|++++.++.... ..+.++++...
T Consensus 224 ~~~~~~~~~~~--~~~p~----~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG 273 (277)
T 2rhc_B 224 VSTEEAFDRIT--ARVPI----GRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 273 (277)
T ss_dssp CCHHHHHHHHH--HHSTT----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cchHHHHHHHH--hcCCC----CCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 00111111 11231 247889999999999886532 35788888754
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-13 Score=156.57 Aligned_cols=223 Identities=17% Similarity=0.208 Sum_probs=153.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||||+||.++++.|++++..+|+++.|........+.+.+.+.. ...++.++.+|++.
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~---------~g~~v~~~~~Dvtd----- 323 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRG---------HGCEVVHAACDVAE----- 323 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHT---------TTCEEEEEECCSSC-----
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHh---------cCCEEEEEEeCCCC-----
Confidence 4678999999999999999999877655788888875332222333332221 23578899999874
Q ss_pred CcHHHHHHHhcc--cCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhccC-CCccEEEEeccc-ccCCCCC
Q psy4557 398 KNQDEYVSLSYE--IDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDS-IYPSTSE 466 (958)
Q Consensus 398 ~~~~~~~~l~~~--vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~-v~~~~~~ 466 (958)
.+....+..+ +|+|||+|+..... . .+...+.+|+.|+.+|.+++... +.++|+++||.+ ++|..
T Consensus 324 --~~~v~~~~~~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~-- 399 (511)
T 2z5l_A 324 --RDALAALVTAYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNA-- 399 (511)
T ss_dssp --HHHHHHHHHHSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCT--
T ss_pred --HHHHHHHHhcCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCC--
Confidence 4566666654 99999999976532 1 23455678999999999998765 678999999974 44421
Q ss_pred CCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCC
Q psy4557 467 NFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPD 546 (958)
Q Consensus 467 ~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~ 546 (958)
....|+.||...|.+.+..+..|+++++++||.+.+ +|...... ... ....|
T Consensus 400 ----------------g~~~YaaaKa~ld~la~~~~~~gi~v~sv~pG~~~~---tgm~~~~~-~~~----~~~~g---- 451 (511)
T 2z5l_A 400 ----------------GQGAYAAANAALDALAERRRAAGLPATSVAWGLWGG---GGMAAGAG-EES----LSRRG---- 451 (511)
T ss_dssp ----------------TBHHHHHHHHHHHHHHHHHHTTTCCCEEEEECCBCS---TTCCCCHH-HHH----HHHHT----
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHcCCcEEEEECCcccC---Cccccccc-HHH----HHhcC----
Confidence 124799999999999987777899999999998832 23222111 111 11223
Q ss_pred CCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 547 IDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 547 ~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
+..++.+.+++++..+...... .+-+ ..+.|..+...+..
T Consensus 452 ----~~~l~~e~~a~~l~~al~~~~~---~v~v---~~~d~~~~~~~~~~ 491 (511)
T 2z5l_A 452 ----LRAMDPDAAVDALLGAMGRNDV---CVTV---VDVDWERFAPATNA 491 (511)
T ss_dssp ----BCCBCHHHHHHHHHHHHHHTCS---EEEE---CCBCHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHHHhCCCC---EEEE---EeCCHHHHHhhhcc
Confidence 2357899999999988754321 2222 34678888776653
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=150.13 Aligned_cols=183 Identities=15% Similarity=0.179 Sum_probs=133.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHHc--CCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTL--GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~--Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
|+++||||+|+||++++++|+++ |++|++++|+.++.+++.. ..+.++.+|++|.+++.++++ .+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~------~~~~~~~~D~~d~~~l~~~~~-------~~ 67 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD------QGVEVRHGDYNQPESLQKAFA-------GV 67 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHH------TTCEEEECCTTCHHHHHHHTT-------TC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhh------cCCeEEEeccCCHHHHHHHHh-------cC
Confidence 46999999999999999999999 9999999999876654432 236678899999988776653 58
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
|++|||||... . + ++|+.++..+++++.. .+.++||++||..+.. ....|+.+|.+.+
T Consensus 68 d~vi~~a~~~~-------~-~------~~n~~~~~~l~~a~~~-----~~~~~~v~~Ss~~~~~---~~~~y~~~K~~~E 125 (287)
T 2jl1_A 68 SKLLFISGPHY-------D-N------TLLIVQHANVVKAARD-----AGVKHIAYTGYAFAEE---SIIPLAHVHLATE 125 (287)
T ss_dssp SEEEECCCCCS-------C-H------HHHHHHHHHHHHHHHH-----TTCSEEEEEEETTGGG---CCSTHHHHHHHHH
T ss_pred CEEEEcCCCCc-------C-c------hHHHHHHHHHHHHHHH-----cCCCEEEEECCCCCCC---CCCchHHHHHHHH
Confidence 99999999631 1 1 6788888887776632 2346999999987642 2347999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc--c---ccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD--I---SKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~--~---~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
.+.+. .|++++.+.||++.+++..... ........ . .....+..++|+|++++.++..+.
T Consensus 126 ~~~~~-------~~~~~~ilrp~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~ 190 (287)
T 2jl1_A 126 YAIRT-------TNIPYTFLRNALYTDFFVNEGL-RASTESGAIVTNAGSGIVNSVTRNELALAAATVLTEEG 190 (287)
T ss_dssp HHHHH-------TTCCEEEEEECCBHHHHSSGGG-HHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHTSSS
T ss_pred HHHHH-------cCCCeEEEECCEeccccchhhH-HHHhhCCceeccCCCCccCccCHHHHHHHHHHHhcCCC
Confidence 88753 5899999999998776421110 01111000 0 112356789999999999887653
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-13 Score=143.85 Aligned_cols=216 Identities=13% Similarity=0.076 Sum_probs=144.7
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++++||||||+|+||.+++++|+++ +.+|+++.|... ...+.+.+.+.. ...++.++.+|++.
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~-G~~V~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~D~~d---- 89 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAA-GAKVAVNYASSA--GAADEVVAAIAA---------AGGEAFAVKADVSQ---- 89 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCH--HHHHHHHHHHHH---------TTCCEEEEECCTTS----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCCh--HHHHHHHHHHHh---------cCCcEEEEECCCCC----
Confidence 35678999999999999999999976 467777776432 122233332222 13578889999874
Q ss_pred CCcHHHHHHHhc-------ccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 397 LKNQDEYVSLSY-------EIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 397 L~~~~~~~~l~~-------~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
.+....+.+ .+|++||||+..... ..++...++|+.|+.++++.+. +.+..+++++||.
T Consensus 90 ---~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~ 166 (269)
T 4dmm_A 90 ---ESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASV 166 (269)
T ss_dssp ---HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCH
T ss_pred ---HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECch
Confidence 344444433 789999999976431 1234567899999999988763 2344689999997
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.+... .....|+.||...+.+.+.. ..+|+++..++||.|..+.. .. ...
T Consensus 167 ~~~~~~-----------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~----~~--~~~-- 221 (269)
T 4dmm_A 167 VGEMGN-----------------PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMT----SE--LAA-- 221 (269)
T ss_dssp HHHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCS----CH--HHH--
T ss_pred hhcCCC-----------------CCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccc----cc--ccH--
Confidence 654211 12347999999999887653 24699999999999976542 11 111
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc---CCCCceEEecCCC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV---NNANKIYNFINTN 583 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~---~~~~~v~h~~n~~ 583 (958)
. ......|- ..+..++++|++++.++..+ .-.|+++++....
T Consensus 222 -~--~~~~~~p~----~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~ 266 (269)
T 4dmm_A 222 -E--KLLEVIPL----GRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGL 266 (269)
T ss_dssp -H--HHGGGCTT----SSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTS
T ss_pred -H--HHHhcCCC----CCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCe
Confidence 1 11122231 23567899999999988653 2357889887654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=139.49 Aligned_cols=224 Identities=13% Similarity=0.063 Sum_probs=147.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++++|||||+|+||.+++++|++++ .+|++..|... ++.+..... ..++.++.+|++.
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~------~~~~~~~~~---------~~~~~~~~~Dv~~----- 65 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGG-AEVLLTGRNES------NIARIREEF---------GPRVHALRSDIAD----- 65 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHH------HHHHHHHHH---------GGGEEEEECCTTC-----
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHH------HHHHHHHHh---------CCcceEEEccCCC-----
Confidence 46789999999999999999999774 68888887522 222222111 2478889999874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccC--CCccEEEEeccccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDSIY 461 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~v~ 461 (958)
.++...+. ..+|++||||+..... ..++...++|+.|+.++++.+... +..+++++||.+.+
T Consensus 66 --~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~ 143 (255)
T 4eso_A 66 --LNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADE 143 (255)
T ss_dssp --HHHHHHHHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGS
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhc
Confidence 34444433 3789999999975431 123456789999999999887643 12489999998764
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA 537 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~ 537 (958)
... .....|+.||...+.+.+..+ .+|+++..++||.|..+..............+...
T Consensus 144 ~~~-----------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 206 (255)
T 4eso_A 144 GGH-----------------PGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTL 206 (255)
T ss_dssp SBC-----------------TTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHH
T ss_pred CCC-----------------CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHH
Confidence 311 123479999999999887532 35999999999999877532211111111111111
Q ss_pred HHHhCCcCCCCCcCCcccHHHHHHHHHHHhcC-cCCCCceEEecCCCCCCH
Q psy4557 538 ITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTN-VNNANKIYNFINTNPIHI 587 (958)
Q Consensus 538 ~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~-~~~~~~v~h~~n~~~~~~ 587 (958)
... ..|- ..+...+++|++++.++.. ..-.|.++++......++
T Consensus 207 ~~~--~~p~----~r~~~pedvA~~v~~L~s~~~~itG~~i~vdGG~~~~l 251 (255)
T 4eso_A 207 GDN--ITPM----KRNGTADEVARAVLFLAFEATFTTGAKLAVDGGLGQKL 251 (255)
T ss_dssp HHH--HSTT----SSCBCHHHHHHHHHHHHHTCTTCCSCEEEESTTTTTTB
T ss_pred Hhc--cCCC----CCCcCHHHHHHHHHHHcCcCcCccCCEEEECCCccccC
Confidence 111 1231 2356789999999988764 223578899887655544
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=8e-13 Score=144.77 Aligned_cols=223 Identities=16% Similarity=0.101 Sum_probs=146.4
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++++||||||+|+||.+++++|++++ .+|++..|.... ...+.+.+.+.. ...++.++.+|++.
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~Dv~d---- 111 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYAREG-ADVAINYLPAEE-EDAQQVKALIEE---------CGRKAVLLPGDLSD---- 111 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCGGGH-HHHHHHHHHHHH---------TTCCEEECCCCTTS----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcch-hHHHHHHHHHHH---------cCCcEEEEEecCCC----
Confidence 357899999999999999999999764 677776664322 222333333222 23578889999874
Q ss_pred CCcHHHHHHHh-------cccCEEEEcccccCccc-----C---hHHHHhhhHHHHHHHHHhhccCCC--ccEEEEeccc
Q psy4557 397 LKNQDEYVSLS-------YEIDMIIHAAAFVNLIL-----P---YNALYKSNVLATKNLIEFSFLNKI--KSFHYVSTDS 459 (958)
Q Consensus 397 L~~~~~~~~l~-------~~vd~IiH~AA~v~~~~-----~---~~~~~~~NV~gt~~ll~~a~~~~~--k~~~~vST~~ 459 (958)
.+....+. ..+|++||||+...... + ++...++|+.|+.++++.+..... .+++++||.+
T Consensus 112 ---~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~ 188 (294)
T 3r3s_A 112 ---ESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQ 188 (294)
T ss_dssp ---HHHHHHHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGG
T ss_pred ---HHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChh
Confidence 34444443 37899999999754222 2 345678999999999998865432 4899999987
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...|.+.+..+ .+|+++..++||.|.++.........+....+
T Consensus 189 ~~~~~-----------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~- 250 (294)
T 3r3s_A 189 AYQPS-----------------PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQF- 250 (294)
T ss_dssp GTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGGSTTT-
T ss_pred hccCC-----------------CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHHHHHH-
Confidence 76421 123469999999999887532 35999999999999875411100001100000
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNP 584 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~ 584 (958)
....| ...+...+++|++++.++.... -.|+++++.....
T Consensus 251 -----~~~~p----~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 292 (294)
T 3r3s_A 251 -----GQQTP----MKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEH 292 (294)
T ss_dssp -----TTTST----TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred -----HhcCC----CCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 00111 1235667889999999886432 3578898876543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-13 Score=142.51 Aligned_cols=220 Identities=15% Similarity=0.077 Sum_probs=146.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++||||||+|+||.+++++|++++ .+|++..|.... .+.+.+.+... ...++.++.+|++.
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~---~~~~~~~l~~~--------~~~~~~~~~~Dv~~----- 71 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAG-ANVAVAGRSTAD---IDACVADLDQL--------GSGKVIGVQTDVSD----- 71 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHH---HHHHHHHHHTT--------SSSCEEEEECCTTS-----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH---HHHHHHHHHhh--------CCCcEEEEEcCCCC-----
Confidence 56799999999999999999999764 688888875321 22222222111 12578899999874
Q ss_pred CcHHHHHHHhc-------ccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhccC----CCccEEEEeccc
Q psy4557 398 KNQDEYVSLSY-------EIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSFLN----KIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~~-------~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~~~----~~k~~~~vST~~ 459 (958)
.+..+.+.+ .+|++||||+..... .+ ++..+++|+.|+.++++.+... +..+++++||..
T Consensus 72 --~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~ 149 (262)
T 3pk0_A 72 --RAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSIT 149 (262)
T ss_dssp --HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSB
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechh
Confidence 344554433 799999999975321 12 3446789999999998876542 457899999975
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
..... ......|+.||...|.+.+..+ .+|+++..++||.|.++.... ...++...+
T Consensus 150 ~~~~~----------------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--~~~~~~~~~- 210 (262)
T 3pk0_A 150 GPITG----------------YPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLE--NGEEYIASM- 210 (262)
T ss_dssp TTTBC----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHT--TCHHHHHHH-
T ss_pred hccCC----------------CCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccc--cCHHHHHHH-
Confidence 42100 0123479999999999987633 369999999999998764211 111211111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNP 584 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~ 584 (958)
....|. -.+...+++|++++.++.... -.|+++++.....
T Consensus 211 -----~~~~p~----~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~ 252 (262)
T 3pk0_A 211 -----ARSIPA----GALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQV 252 (262)
T ss_dssp -----HTTSTT----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred -----HhcCCC----CCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCee
Confidence 122232 235678999999999886432 3578898876543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-12 Score=140.63 Aligned_cols=219 Identities=11% Similarity=0.027 Sum_probs=146.5
Q ss_pred ccCceEEeccccc--hHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 318 KYGNVLLTGVTGY--LGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 318 ~~~~VllTGaTGf--lGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
++++||||||+|| ||.+++++|+++ +.+|++..|..... +.+.+....++ ..++.++.+|++.+
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~-G~~V~~~~r~~~~~---~~~~~~~~~~~--------~~~~~~~~~D~~~~-- 71 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA-GARLIFTYAGERLE---KSVHELAGTLD--------RNDSIILPCDVTND-- 71 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGH---HHHHHHHHTSS--------SCCCEEEECCCSSS--
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEecCchHHH---HHHHHHHHhcC--------CCCceEEeCCCCCH--
Confidence 4678999999999 999999999976 46888888764322 23333222211 23788999999853
Q ss_pred CCCcHHHHHHHh-------cccCEEEEcccccCc--------ccC---hHHHHhhhHHHHHHHHHhhccCC--CccEEEE
Q psy4557 396 GLKNQDEYVSLS-------YEIDMIIHAAAFVNL--------ILP---YNALYKSNVLATKNLIEFSFLNK--IKSFHYV 455 (958)
Q Consensus 396 GL~~~~~~~~l~-------~~vd~IiH~AA~v~~--------~~~---~~~~~~~NV~gt~~ll~~a~~~~--~k~~~~v 455 (958)
++.+.+. ..+|++||+|+.... ..+ +....++|+.|+.++++.+...- ..+++++
T Consensus 72 -----~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 146 (266)
T 3oig_A 72 -----AEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL 146 (266)
T ss_dssp -----HHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred -----HHHHHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 3444443 378999999997541 112 23466799999999998876532 2489999
Q ss_pred ecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHH
Q psy4557 456 STDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLN 531 (958)
Q Consensus 456 ST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~ 531 (958)
||.+.+... .....|+.||...+.+.+..+ ..|+++..++||.|..+...+.....+..
T Consensus 147 sS~~~~~~~-----------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 209 (266)
T 3oig_A 147 TYLGGELVM-----------------PNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSIL 209 (266)
T ss_dssp ECGGGTSCC-----------------TTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHH
T ss_pred ecccccccC-----------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHH
Confidence 997654311 123479999999999887532 45899999999999876543332222222
Q ss_pred HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 532 ~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
..+ .. ..|. -.+...+++|++++.++... ...|.++++...
T Consensus 210 ~~~----~~--~~~~----~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG 252 (266)
T 3oig_A 210 KDI----EE--RAPL----RRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSG 252 (266)
T ss_dssp HHH----HH--HSTT----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHH----Hh--cCCC----CCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCC
Confidence 211 11 1121 23567899999999988643 245788888753
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-13 Score=143.86 Aligned_cols=217 Identities=14% Similarity=0.126 Sum_probs=136.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEe-ccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCP-VRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~cl-vR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
+.++||||||+|+||.+++++|++++ .+|+.+ .|.. ...+.+.+.+.. ...++.++.+|++.
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G-~~V~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~Dl~~---- 87 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQG-WRVGVNYAANR---EAADAVVAAITE---------SGGEAVAIPGDVGN---- 87 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCH---HHHHHHHHHHHH---------TTCEEEEEECCTTC----
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCh---hHHHHHHHHHHh---------cCCcEEEEEcCCCC----
Confidence 45789999999999999999999874 566554 4432 122333332221 23578899999874
Q ss_pred CCcHHHHHHHhc-------ccCEEEEcccccCccc-----C---hHHHHhhhHHHHHHHHHhhccC-------CCccEEE
Q psy4557 397 LKNQDEYVSLSY-------EIDMIIHAAAFVNLIL-----P---YNALYKSNVLATKNLIEFSFLN-------KIKSFHY 454 (958)
Q Consensus 397 L~~~~~~~~l~~-------~vd~IiH~AA~v~~~~-----~---~~~~~~~NV~gt~~ll~~a~~~-------~~k~~~~ 454 (958)
.+....+.+ .+|+|||||+...... + ++....+|+.|+.++++.+... +..+|++
T Consensus 88 ---~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~ 164 (272)
T 4e3z_A 88 ---AADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVN 164 (272)
T ss_dssp ---HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEE
T ss_pred ---HHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 344444433 7899999999765422 2 3456789999999998776432 2357999
Q ss_pred EecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHH
Q psy4557 455 VSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDL 530 (958)
Q Consensus 455 vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~ 530 (958)
+||.+.+.... .....|+.||...|.+++..+ ..|++++.++||.|.++..... ...+.
T Consensus 165 isS~~~~~~~~----------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~ 227 (272)
T 4e3z_A 165 VSSMAAILGSA----------------TQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASG-GLPDR 227 (272)
T ss_dssp ECCTHHHHCCT----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------
T ss_pred EcchHhccCCC----------------CCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCccccc-CChHH
Confidence 99976642110 012359999999999886532 3499999999999987643211 01111
Q ss_pred HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 531 NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 531 ~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
. +.. ....| ...+..++++|++++.++.... -.|++|++..
T Consensus 228 ~----~~~--~~~~~----~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdg 270 (272)
T 4e3z_A 228 A----REM--APSVP----MQRAGMPEEVADAILYLLSPSASYVTGSILNVSG 270 (272)
T ss_dssp ------------CCT----TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred H----HHH--hhcCC----cCCCcCHHHHHHHHHHHhCCccccccCCEEeecC
Confidence 1 100 01112 1234668999999999885432 3578888864
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=143.43 Aligned_cols=219 Identities=14% Similarity=0.127 Sum_probs=146.7
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++++||||||+|+||.+++++|+++ +.+|++..|.... ..+.+.+.+. ....++.++.+|++.
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~--~~~~~~~~~~---------~~~~~~~~~~~Dv~d---- 108 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKE-GANIAIAYLDEEG--DANETKQYVE---------KEGVKCVLLPGDLSD---- 108 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCHH--HHHHHHHHHH---------TTTCCEEEEESCTTS----
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCchH--HHHHHHHHHH---------hcCCcEEEEECCCCC----
Confidence 35789999999999999999999977 4688888775432 1222222222 123578899999874
Q ss_pred CCcHHHHHHHh-------cccCEEEEcccccCccc-----C---hHHHHhhhHHHHHHHHHhhccC--CCccEEEEeccc
Q psy4557 397 LKNQDEYVSLS-------YEIDMIIHAAAFVNLIL-----P---YNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDS 459 (958)
Q Consensus 397 L~~~~~~~~l~-------~~vd~IiH~AA~v~~~~-----~---~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~ 459 (958)
.+....+. ..+|++||||+...... + ++...++|+.|+.++++.+... +..+++++||..
T Consensus 109 ---~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~ 185 (291)
T 3ijr_A 109 ---EQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIV 185 (291)
T ss_dssp ---HHHHHHHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTH
T ss_pred ---HHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechH
Confidence 34444443 37899999999754322 2 3456789999999999988653 234899999987
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
.+... .....|+.||...|.+.+..+ .+|+++..++||.|.++.....+.. +.
T Consensus 186 ~~~~~-----------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~-~~----- 242 (291)
T 3ijr_A 186 AYEGN-----------------ETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDE-KK----- 242 (291)
T ss_dssp HHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSCH-HH-----
T ss_pred hcCCC-----------------CCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCCH-HH-----
Confidence 65321 113479999999999887633 3599999999999987531111110 00
Q ss_pred HHHHHhC-CcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCC
Q psy4557 536 KAITRLG-YAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTN 583 (958)
Q Consensus 536 ~~~~~~g-~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~ 583 (958)
...++ ..| ...+..++++|++++.++.... -.|+++++....
T Consensus 243 --~~~~~~~~p----~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 287 (291)
T 3ijr_A 243 --VSQFGSNVP----MQRPGQPYELAPAYVYLASSDSSYVTGQMIHVNGGV 287 (291)
T ss_dssp --HHHTTTTST----TSSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESSSC
T ss_pred --HHHHHccCC----CCCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCCc
Confidence 01111 122 2345678899999999886432 357888887543
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=141.15 Aligned_cols=217 Identities=15% Similarity=0.070 Sum_probs=142.5
Q ss_pred ccCceEEeccc--cchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 318 KYGNVLLTGVT--GYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 318 ~~~~VllTGaT--GflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
++++||||||+ |+||.++++.|+++ +.+|+++.|........+.+. ... .++.++.+|++.
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~l~---~~~----------~~~~~~~~D~~~--- 67 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNESLEKRVRPIA---QEL----------NSPYVYELDVSK--- 67 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESSTTTHHHHHHHH---HHT----------TCCCEEECCTTC---
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHH---Hhc----------CCcEEEEcCCCC---
Confidence 35789999999 99999999999976 478988888754222222221 111 236778889874
Q ss_pred CCCcHHHHHHHhc-------ccCEEEEcccccCc--------cc---ChHHHHhhhHHHHHHHHHhhccC--CCccEEEE
Q psy4557 396 GLKNQDEYVSLSY-------EIDMIIHAAAFVNL--------IL---PYNALYKSNVLATKNLIEFSFLN--KIKSFHYV 455 (958)
Q Consensus 396 GL~~~~~~~~l~~-------~vd~IiH~AA~v~~--------~~---~~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~v 455 (958)
.+....+.+ .+|++||||+.... .. .++....+|+.|+.++++.+... +..+++++
T Consensus 68 ----~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 143 (275)
T 2pd4_A 68 ----EEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTL 143 (275)
T ss_dssp ----HHHHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEE
Confidence 344444433 68999999997542 11 23456789999999999988654 12589999
Q ss_pred ecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHH
Q psy4557 456 STDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLN 531 (958)
Q Consensus 456 ST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~ 531 (958)
||.+.+... .....|+.||...+.+.+..+ ..|++++.++||.|.++.........++.
T Consensus 144 sS~~~~~~~-----------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~ 206 (275)
T 2pd4_A 144 SYLGSTKYM-----------------AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMIL 206 (275)
T ss_dssp ECGGGTSBC-----------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHH
T ss_pred ecchhcCCC-----------------CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHH
Confidence 997653210 123469999999999887532 35999999999999876532221111211
Q ss_pred HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCC
Q psy4557 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINT 582 (958)
Q Consensus 532 ~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~ 582 (958)
..... ..|- ..+...+++|++++.++... ...+.++++...
T Consensus 207 ----~~~~~--~~p~----~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg 249 (275)
T 2pd4_A 207 ----KWNEI--NAPL----RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAG 249 (275)
T ss_dssp ----HHHHH--HSTT----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----HHHHh--cCCc----CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 11111 1231 12467899999999988643 235678887653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 958 | ||||
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 3e-58 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 5e-49 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 3e-48 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 4e-48 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 6e-48 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 1e-47 | |
| d2bd0a1 | 240 | c.2.1.2 (A:2-241) Bacterial sepiapterin reductase | 3e-47 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 2e-45 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 4e-45 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 8e-45 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 1e-44 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 4e-44 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 5e-44 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 5e-44 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 6e-44 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 3e-42 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 3e-42 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 8e-42 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 1e-41 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 1e-41 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 4e-41 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 4e-40 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 5e-40 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 9e-40 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 1e-39 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 8e-39 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 9e-39 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 3e-38 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 5e-38 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 1e-37 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 1e-37 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 2e-37 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 4e-37 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 1e-36 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 2e-36 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 3e-36 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 5e-36 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 1e-35 | |
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 1e-35 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 1e-35 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 3e-35 | |
| d2ag5a1 | 245 | c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami | 1e-34 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 2e-34 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 3e-34 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 3e-34 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 4e-34 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 4e-34 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 3e-33 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-32 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 8e-32 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 3e-31 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 6e-29 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 2e-28 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 1e-27 | |
| d1ulua_ | 256 | c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph | 1e-27 | |
| d2o23a1 | 248 | c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr | 3e-27 | |
| d1qsga_ | 258 | c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli | 2e-26 | |
| d1mxha_ | 266 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 5e-26 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 1e-25 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-24 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 3e-24 | |
| d1snya_ | 248 | c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly | 1e-23 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 2e-23 | |
| d1fjha_ | 257 | c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase | 1e-22 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-21 | |
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-18 | |
| d2pd4a1 | 274 | c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte | 4e-18 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 5e-17 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 5e-17 | |
| d1e7wa_ | 284 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 6e-17 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 9e-17 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 1e-16 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 9e-16 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 0.002 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 2e-15 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 2e-05 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 5e-14 | |
| d2gdwa1 | 76 | a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), | 5e-14 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 9e-14 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-13 | |
| d2pnga1 | 76 | a.28.1.1 (A:1-76) Type I fatty acid synthase ACP d | 4e-12 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 6e-12 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 1e-04 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 5e-10 | |
| d2h7ma1 | 268 | c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri | 8e-10 | |
| d1uh5a_ | 329 | c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite | 3e-09 | |
| d1d7oa_ | 297 | c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B | 8e-09 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 5e-08 | |
| d1vkua_ | 85 | a.28.1.1 (A:) Acyl carrier protein {Thermotoga mar | 5e-08 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-07 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 0.002 | |
| d1nq4a_ | 95 | a.28.1.1 (A:) Oxytetracycline polyketide synthase | 3e-07 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-07 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 1e-06 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 6e-05 | |
| d1or5a_ | 82 | a.28.1.1 (A:) Frenolicin polyketide synthase acyl | 3e-06 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 5e-06 | |
| d2jq4a1 | 83 | a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Ag | 7e-06 | |
| d2af8a_ | 86 | a.28.1.1 (A:) Actinorhodin polyketide synthase acy | 8e-06 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 2e-05 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 3e-04 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 2e-05 | |
| d1dv5a_ | 80 | a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactob | 3e-05 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 4e-05 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 6e-04 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 2e-04 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 4e-04 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 6e-04 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 0.002 |
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 198 bits (504), Expect = 3e-58
Identities = 71/249 (28%), Positives = 126/249 (50%), Gaps = 7/249 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIV 769
+++ VTG+S GIG + + LV G KVV AR + +E L ++A PG++I
Sbjct: 6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIP 65
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
+ D++ E D+ + + ++ +DI +NNAG+ + W M NVN+ +
Sbjct: 66 YRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALS 125
Query: 830 HCIGNILPSML-HSRRPGHILNISSNAGVR--PFAGLAVYTGTKYFIEGISGALRQEVSD 886
C SM + GHI+NI+S +G R P + Y+ TKY + ++ LRQE+ +
Sbjct: 126 ICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELRE 185
Query: 887 --RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHS 944
+I+ TCI G V+T+ D+D + + L +++++++I+ L P+H
Sbjct: 186 AQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAHI 245
Query: 945 AVNSILIEP 953
+ I + P
Sbjct: 246 QIGDIQMRP 254
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 172 bits (436), Expect = 5e-49
Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 14/231 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ +++ +TG+ GIG + L +K+V LE + + +D
Sbjct: 5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVD 64
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ D+ ++V AE+G + ILVNNAGV+Y + + + + VN+
Sbjct: 65 CSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTK 124
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS---DRNIK 890
LP+M GHI+ ++S AG L Y +K+ G L E++ +K
Sbjct: 125 AFLPAM-TKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVK 183
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941
TC+ V T + + + P L +E+ ++ +L
Sbjct: 184 TTCLCPNFVNTGFIKNPSTS----------LGPTLEPEEVVNRLMHGILTE 224
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 169 bits (430), Expect = 3e-48
Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 6/236 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +K+ +TG ++GIG + + GA + + +++N ++ K D
Sbjct: 3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADL--VPAPEAEAAIRNLGRRVLTVKCD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ DV+ ++V++ G DILVNNAG+ ++ E+W +N+
Sbjct: 61 VSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAK 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+P M G I+N++S Y TK G + AL ++ I V
Sbjct: 121 AFVPGM-KRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKDGITVNA 179
Query: 894 IQAGDVKTELLSHSTDRDVVDKY-DISKAVPVL-TTKEISQSIIFALLQPSHSAVN 947
I V+T S + D ++ +A+P L +++ + F L S +
Sbjct: 180 IAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAAAF-LASDDASFIT 234
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 169 bits (430), Expect = 4e-48
Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 9/241 (3%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
N L KV +TG + GIG + V GAKV+ R D E S+ P I +
Sbjct: 2 NRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV-GTPDQIQFFQ 60
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D + E+ K+ G + LVNNAG+ +E+ EW ++ VN+ GV
Sbjct: 61 HDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFG 120
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI--SGALRQEVSDRNI 889
+ M + I+N+SS G L Y +K + + S AL + D ++
Sbjct: 121 TRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDV 180
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAV 946
+V + G +KT L+ + + P + +I+ ++ L
Sbjct: 181 RVNTVHPGYIKTPLVDDLPGAE--EAMSQRTKTPMGHIGEPNDIAYICVY-LASNESKFA 237
Query: 947 N 947
Sbjct: 238 T 238
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 169 bits (430), Expect = 6e-48
Identities = 58/250 (23%), Positives = 102/250 (40%), Gaps = 17/250 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA---PGSIIVK 770
A KV +TGSS+GIG GAKV R +RLE + + A ++
Sbjct: 3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSV 62
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEK----YKLEEWNAMINVNIK 826
DVT + +++ L + G +DILVNNAG K +E ++A +N+N++
Sbjct: 63 VADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLR 122
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
V+ +P + ++ S +G+ Y+ K I+ + ++
Sbjct: 123 SVIALTKKAVPHLSSTKGEIVN-ISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQ 181
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKY------DISKAVP---VLTTKEISQSIIFA 937
I+V I G V T S + K + + VP + ++I++ I F
Sbjct: 182 HGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFL 241
Query: 938 LLQPSHSAVN 947
+ + S +
Sbjct: 242 ADRKTSSYII 251
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 168 bits (426), Expect = 1e-47
Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 14/240 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
A K + VTG + GIG + + GA V R + E + A G + +D
Sbjct: 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-----VAEAIGGAFFQ-VD 56
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ E + + V E LG +D+LVNNA + +L EW ++ VN+ +H
Sbjct: 57 LEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSA 116
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
M G I+N++S G+ A Y +K + ++ +L +++ I+V
Sbjct: 117 LAAREM-RKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNA 175
Query: 894 IQAGDVKTELLSHSTDRDVVD---KYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
+ G + TE + + + D + +E++++++F L S +
Sbjct: 176 VAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLF-LASEKASFIT 234
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Score = 166 bits (422), Expect = 3e-47
Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 17/244 (6%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAK-------VVAVARRIDRLENLKTSLQNAPGSIIV 769
++ +TG+ GIG + + +V +R LE + +
Sbjct: 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDT 61
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
D++ DV+++ ++ GHID LVNNAGV F + E+++ +N N+KG
Sbjct: 62 ITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTF 121
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ M + GHI I+S A + F ++Y +K+ G+ +R N+
Sbjct: 122 FLTQALFALM-ERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCNV 180
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949
++T +Q G V T + D ++ ++I+ ++ A LQPS + V I
Sbjct: 181 RITDVQPGAVYTPMWGKVDDEM---------QALMMMPEDIAAPVVQAYLQPSRTVVEEI 231
Query: 950 LIEP 953
++ P
Sbjct: 232 ILRP 235
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 161 bits (409), Expect = 2e-45
Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 13/233 (5%)
Query: 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVK 770
G A KV+ VTG GIG +V+ V GA+VV + L+ L A +
Sbjct: 1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGA----VFI 56
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFT-LMEKYKLEEWNAMINVNIKGVL 829
DVT E+DVK +V E + G +D +VNNAG E+ + + ++ +N+ G
Sbjct: 57 LCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTY 116
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
LP + + G+++NISS G A Y TK + ++ AL + S +
Sbjct: 117 TLTKLALPYL--RKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGV 174
Query: 890 KVTCIQAGDVKTEL---LSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIF 936
+V CI G++ T L L+ + A P + E+ + +F
Sbjct: 175 RVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVF 227
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 161 bits (408), Expect = 4e-45
Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 8/238 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K + VTG + GIG +V++ GA + AR L + Q + D
Sbjct: 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCD 65
Query: 774 VTIENDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
++ + +K+++ V + G +DIL+NN G + Y E+++ I+ N++ H
Sbjct: 66 ASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLS 125
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P + S +I+ +SS AGV + ++Y+ TK + ++ L E + I+
Sbjct: 126 QLAHPLLKASGCG-NIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRAN 184
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
+ + T L D + + P +E+S + F L P+ S +
Sbjct: 185 AVAPAVIATPLAEAVYDDEFKKV--VISRKPLGRFGEPEEVSSLVAF-LCMPAASYIT 239
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 160 bits (405), Expect = 8e-45
Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 12/240 (5%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
N L+ K + +TG + G+G + + V GA+VV + L + +
Sbjct: 1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---GDAARYQH 57
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
LDVTIE D ++VV E G +D LVNNAG+ +E +E + ++ +N+ GV
Sbjct: 58 LDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIG 117
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
+ ++P+M G I+NISS AG+ A + Y +K+ + G+S E+ I+V
Sbjct: 118 MKTVIPAMKD-AGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRV 176
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYDISKAVPV----LTTKEISQSIIFALLQPSHSAVN 947
+ G T + + + R Y P+ EI+ +++ LL + S V
Sbjct: 177 NSVHPGMTYTPMTAETGIRQGEGNY---PNTPMGRVGNEPGEIAGAVVK-LLSDTSSYVT 232
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 159 bits (404), Expect = 1e-44
Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 13/243 (5%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
N L KV VTG +SG+G ++VK L+ GAKV + L L + +
Sbjct: 2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---GERSMFVR 58
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DV+ E D V+ V LG +++LVNNAG++ ME +LE+++ ++ +N + V
Sbjct: 59 HDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIG 118
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR--NI 889
+ +M G I+N++S + P A Y+ +K + ++ A + I
Sbjct: 119 CQQGIAAMK--ETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAI 176
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKY--DISKAVP---VLTTKEISQSIIFALLQPSHS 944
+V I + T ++ S + V + K + I+Q ++F L S
Sbjct: 177 RVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLF-LASDESS 235
Query: 945 AVN 947
++
Sbjct: 236 VMS 238
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 158 bits (401), Expect = 4e-44
Identities = 49/239 (20%), Positives = 95/239 (39%), Gaps = 17/239 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA---PGSIIVK 770
+NK + +TGSS+GIG GA V R +RLE + + + +
Sbjct: 3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSV 62
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEE----WNAMINVNIK 826
DVT E+ +++ L + G ID+LVNNAG ++ ++ + +N++
Sbjct: 63 VADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQ 122
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
V+ + P L + + + S AG + Y K ++ + + +++
Sbjct: 123 AVIEMTKKVKP-HLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAK 181
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKY------DISKAVP---VLTTKEISQSIIF 936
I+V + G V+T + D + + +P + I+ I+F
Sbjct: 182 FGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILF 240
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 157 bits (399), Expect = 5e-44
Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 25/246 (10%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL--QNAPGSIIVKKLD 773
KV VTG++ GIG + L+ GAKV V ++ K +L Q P + + D
Sbjct: 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V + ++ R+V+ G +DILVNNAGV W + +N+ V+
Sbjct: 63 VADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEK--------NWEKTLQINLVSVISGTY 114
Query: 834 NILPSML--HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGIS--GALRQEVSDRNI 889
L M + G I+N+SS AG+ P A VY +K+ I G + AL + + +
Sbjct: 115 LGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGV 174
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYD-----ISKAVP---VLTTKEISQSIIFALLQP 941
++ I G V T +L + + +Y I + +L I+ +I +
Sbjct: 175 RLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLI--- 231
Query: 942 SHSAVN 947
A+N
Sbjct: 232 EDDALN 237
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 157 bits (398), Expect = 5e-44
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 15/238 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ VTG+ GIG VK L GAKVVAV R L +L I +D
Sbjct: 3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----PGIEPVCVD 58
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ + +K + +G +D+LVNNA ++ + E ++ +VN++ V
Sbjct: 59 LGDWDATEKAL----GGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQ 114
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ M++ PG I+N+SS F L Y+ TK + ++ A+ E+ I+V
Sbjct: 115 MVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNS 174
Query: 894 IQAGDVKTELL-SHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
+ V T++ S D + K + + P +++ SI+F LL ++ +
Sbjct: 175 VNPTVVLTDMGKKVSADPEFARK--LKERHPLRKFAEVEDVVNSILF-LLSDRSASTS 229
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 157 bits (399), Expect = 6e-44
Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 14/231 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKL 772
L NK + + GIG ++LV K + R++ L P +I
Sbjct: 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTY 62
Query: 773 DVTIEN-DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
DVT+ + KK+++++ +L +DIL+N AG++ + I +N G+++
Sbjct: 63 DVTVPVAESKKLLKKIFDQLKTVDILINGAGIL--------DDHQIERTIAINFTGLVNT 114
Query: 832 IGNILP--SMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
IL G I NI S G + VY+ +K + + +L + +
Sbjct: 115 TTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPITGV 174
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKY--DISKAVPVLTTKEISQSIIFAL 938
I G +T L+ V+ ++ + P T+++ Q+ + A+
Sbjct: 175 TAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAI 225
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 152 bits (385), Expect = 3e-42
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 13/237 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
LA + + VTG+ GIG V+ L GA+VVAV+R L++L I +D
Sbjct: 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----PGIEPVCVD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+ ++ + +G +D+LVNNA V + E ++ VN++ V+
Sbjct: 61 LGDWEATERAL----GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQ 116
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ ++ PG I+N+SS R +VY TK ++ ++ + E+ I+V
Sbjct: 117 IVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNA 176
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
+ V T + +T D + +P + + +I+F LL
Sbjct: 177 VNPTVVMTSMG-QATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILF-LLSDRSGMTT 231
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 154 bits (390), Expect = 3e-42
Identities = 44/220 (20%), Positives = 83/220 (37%), Gaps = 15/220 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVA---------VARRIDRLENLKTSLQNAP 764
+V+ VTG+ G+G GA VV V + + + ++
Sbjct: 5 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG 64
Query: 765 GSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVN 824
G + V +K+V+ L G ID++VNNAG++ + E+W+ + V+
Sbjct: 65 GKAVANYDSVE---AGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVH 121
Query: 825 IKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEV 884
++G M + G I+ +S +G+ G A Y+ K + G++ L E
Sbjct: 122 LRGSFQVTRAAWDHMK-KQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEG 180
Query: 885 SDRNIKVTCIQAGDVKTELLSHSTD--RDVVDKYDISKAV 922
NI I + + + + ++ V
Sbjct: 181 RKNNIHCNTIAPNAGSRMTETVMPEDLVEALKPEYVAPLV 220
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 152 bits (384), Expect = 8e-42
Identities = 59/243 (24%), Positives = 114/243 (46%), Gaps = 9/243 (3%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
N L +KV +TG + GIGE K V GAKVV D + + ++ +P I
Sbjct: 2 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI-GSPDVISFVH 60
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFT--LMEKYKLEEWNAMINVNIKGVL 829
DVT + DV+ +V +A+ G +DI+ N GV+ T + + E++ ++++N+ G
Sbjct: 61 CDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF 120
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ M+ +++ + S ++ VYT TK+ + G++ +L E+ + I
Sbjct: 121 LVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGI 180
Query: 890 KVTCIQAGDVKTELLSH--STDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHS 944
+V C+ V + LL+ D V++ A +L ++++ ++ + L
Sbjct: 181 RVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAY-LAGDESK 239
Query: 945 AVN 947
V+
Sbjct: 240 YVS 242
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 151 bits (383), Expect = 1e-41
Identities = 53/237 (22%), Positives = 88/237 (37%), Gaps = 15/237 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS---IIVK 770
+ K + +TGSS+GIG GA+V R DRLE K + A I
Sbjct: 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAV 61
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNA--GVMYFTLMEKYKLEEWNAMINVNIKGV 828
DVT + ++ LA+ G IDILVNNA + T +E + +N + V
Sbjct: 62 VADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAV 121
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ L + + S AG + +G Y K ++ + ++
Sbjct: 122 IEMT-QKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQHG 180
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKY------DISKAVP---VLTTKEISQSIIF 936
++V + G V T + + + +P +EI+ I+F
Sbjct: 181 VRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVF 237
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 151 bits (382), Expect = 1e-41
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 8/240 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L VTG S GIG +V++L +LGA V +R L + T ++ + D
Sbjct: 6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCD 65
Query: 774 VTIENDVKKVVREVLAELGH-IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
++ ++ ++++ V ++ILVNNAG++ + + Y +E+++ ++++N + H
Sbjct: 66 LSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLS 125
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
P + S R + ISS +G AVY TK ++ ++ L E + NI+V
Sbjct: 126 VLAHPFLKASERGNVV-FISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVN 184
Query: 893 CIQAGDVKTELLSHSTDRDVVDKY--DISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
+ G + T L+ + + + + KE++ + F L P+ S V
Sbjct: 185 GVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAF-LCFPAASYVT 243
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 149 bits (378), Expect = 4e-41
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 15/245 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKL 772
NK I VTG + GIG + + GA V + R + + G +
Sbjct: 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQC 66
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ + V K ++++ A+LG I L+ NAGV + E++ + +VN+ GV +
Sbjct: 67 DVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTC 126
Query: 833 GNILPSMLHSRRPGHILNIS-------SNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
+ L ++ G I+ S + + + Y +K + L E +
Sbjct: 127 RAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWA 186
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPS 942
I+V + G V T+ +H D+ + D + +P +E++ I LL
Sbjct: 187 SAGIRVNALSPGYVNTDQTAH-MDKKIRDH--QASNIPLNRFAQPEEMTGQAIL-LLSDH 242
Query: 943 HSAVN 947
+ +
Sbjct: 243 ATYMT 247
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 146 bits (369), Expect = 4e-40
Identities = 50/237 (21%), Positives = 97/237 (40%), Gaps = 14/237 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L +K + +TG++ GIG ++ GA++VA L ++ P +D
Sbjct: 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHP-----VVMD 57
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V V++ E LA LG +D +V+ AG+ K LE+W ++ VN+ G
Sbjct: 58 VADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAK 117
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+M + ++++ G A Y + + G++ L E+ I+V
Sbjct: 118 AASEAMREKN--PGSIVLTASRVYLGNLGQANYAASMAGVVGLTRTLALELGRWGIRVNT 175
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
+ G ++T + + ++ + A P E++ + +F LL S +
Sbjct: 176 LAPGFIETRMTAKVPEK---VREKAIAATPLGRAGKPLEVAYAALF-LLSDESSFIT 228
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 147 bits (371), Expect = 5e-40
Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 22/247 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L + + +TG +SG+G LV V GAKV + + +RL L+T +++ D
Sbjct: 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH---GDNVLGIVGD 59
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKL-----EEWNAMINVNIKGV 828
V D K+ +A G ID L+ NAG+ ++ ++ + ++N+KG
Sbjct: 60 VRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGY 119
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+H + LP+++ SR G+++ SNAG P G +YT K+ I G+ L E++
Sbjct: 120 IHAVKACLPALVASR--GNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELAFELA-PY 176
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYD-------ISKAVP---VLTTKEISQSIIFAL 938
++V + +G + ++L S+ + +P + +E + + +F
Sbjct: 177 VRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGRMPEVEEYTGAYVF-F 235
Query: 939 LQPSHSA 945
+A
Sbjct: 236 ATRGDAA 242
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 146 bits (368), Expect = 9e-40
Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 13/245 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKK 771
++V+ +TG SG+G L GAK+ V + LE K ++ ++
Sbjct: 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTV 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAG-VMYFTLMEKYKLEEWNAMINVNIKGVLH 830
DV+ E V+ V G ID NNAG E + E++ ++++N++GV
Sbjct: 62 ADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFL 121
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ +L M + G ++N +S G+R + Y K+ + G++ E I+
Sbjct: 122 GLEKVLKIMRE-QGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIR 180
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYD-----ISKAVP---VLTTKEISQSIIFALLQPS 942
+ I G + T ++ +S + + + P EI+ + F LL
Sbjct: 181 INAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAF-LLSDD 239
Query: 943 HSAVN 947
S VN
Sbjct: 240 ASYVN 244
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 145 bits (367), Expect = 1e-39
Identities = 62/237 (26%), Positives = 119/237 (50%), Gaps = 8/237 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
NKV VTG+ GIG ++ K L + V+ ++R +++ +++ D
Sbjct: 8 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGD 67
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ + ++ +V+ ++L E ++DILVNNAG+ L + K +EW ++ N+ + +
Sbjct: 68 VSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQ 127
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
I M++ R G I+NISS G+ G A Y+ +K + G + +L +E++ RNI V
Sbjct: 128 PISKRMIN-NRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNITVNA 186
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
I G + +++ +++ K +I +P + T +E++ F L +N
Sbjct: 187 IAPGFISSDMTDKISEQ---IKKNIISNIPAGRMGTPEEVANLACF-LSSDKSGYIN 239
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 142 bits (360), Expect = 8e-39
Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 8/239 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVKKL 772
L +V VTG S G+G + + L G VV +R ++ L G + +
Sbjct: 3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 62
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DV+ +VKK++ V + G +D +VN AG+ E++ L+E+ +I VN+ G +
Sbjct: 63 DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVC 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ S P I S ++ Y +K + ++ AL +E I+V
Sbjct: 123 REAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVN 182
Query: 893 CIQAGDVKTELL-SHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
I G +T++ + +D + +D + K +P +++ +F L V
Sbjct: 183 VIAPGWYRTKMTEAVFSDPEKLDY--MLKRIPLGRTGVPEDLKGVAVF-LASEEAKYVT 238
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 142 bits (360), Expect = 9e-39
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 19/249 (7%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-LENLKTSLQNAPGSIIVKKL 772
LA KV TG+ GIG + +L GA VV + E + L+ + +
Sbjct: 4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQA 63
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
D++ ++V + + ++ G +D +++N+G+ + + E ++ + N+N +G
Sbjct: 64 DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVA 123
Query: 833 GNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
L RR G I+ SS A V A+Y G+K +EG A + + + V
Sbjct: 124 QQGLKHC---RRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTV 180
Query: 892 TCIQAGDVKTELLSHSTDRDVVDKYD----------ISKAVP---VLTTKEISQSIIFAL 938
CI G VKT++ ++ Y ++ P + +I +++ L
Sbjct: 181 NCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSA-L 239
Query: 939 LQPSHSAVN 947
Q +N
Sbjct: 240 CQEESEWIN 248
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 141 bits (355), Expect = 3e-38
Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 8/235 (3%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVV-AVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
V+ VTG+S GIG+ + L G KV+ AR E + ++ G I DV+
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVS 61
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
E DV+ +++ + G ID++VNNAG+ TL+ + K +W+ +I++N+ GV C
Sbjct: 62 KEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAA 121
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQ 895
M+ +R G I+NI+S G+ G A Y K + G S +E + RNI V +
Sbjct: 122 TKIMM-KKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVC 180
Query: 896 AGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
G + +++ + + D+ K I +P + ++ + F L P+ S +
Sbjct: 181 PGFIASDMTAKLGE-DMEKK--ILGTIPLGRTGQPENVAGLVEFLALSPAASYIT 232
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 142 bits (358), Expect = 5e-38
Identities = 53/243 (21%), Positives = 109/243 (44%), Gaps = 12/243 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ-----NAPGSII 768
L +V VTG ++GIG+ +VK+L+ LG+ VV +R+++RL++ LQ +I
Sbjct: 10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 69
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
+ ++ E +V +V+ L G I+ LVNN G + + E + W+A++ N+ G
Sbjct: 70 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGT 129
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ + S + + I P + + ++ +L E +
Sbjct: 130 FYMCKAVYSSWMKEHGGSIVNIIVPTKAGFP--LAVHSGAARAGVYNLTKSLALEWACSG 187
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVP---VLTTKEISQSIIFALLQPSHS 944
I++ C+ G + ++ + ++ + +P + +E+S + F LL P+ S
Sbjct: 188 IRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCF-LLSPAAS 246
Query: 945 AVN 947
+
Sbjct: 247 FIT 249
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 140 bits (353), Expect = 1e-37
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 5/202 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPG-SIIVK 770
L K + VTG+S GIG ++ L +GA VV AR + L+ + + S
Sbjct: 10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYI 69
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+ ++ V + +G +D+L+ N + + + VN +
Sbjct: 70 AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVV 129
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR--N 888
LP + + G I+ +SS AG + +A Y+ +K+ ++G ++R+E S N
Sbjct: 130 LTVAALPML--KQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVN 187
Query: 889 IKVTCIQAGDVKTELLSHSTDR 910
+ +T G + TE +
Sbjct: 188 VSITLCVLGLIDTETAMKAVSG 209
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 139 bits (351), Expect = 1e-37
Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 6/238 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKL 772
L KV+ +TGSS+G+G+ + T AKVV R D ++ ++ G I K
Sbjct: 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKG 64
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
DVT+E+DV +V+ + E G +D+++NNAG+ + L +WN +I+ N+ G
Sbjct: 65 DVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGS 124
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ + + G ++N+SS P+ Y +K ++ ++ L E + + I+V
Sbjct: 125 REAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVN 184
Query: 893 CIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
I G + T + + D+ +P + +EI+ + L S V
Sbjct: 185 NIGPGAINTPINAEKFADPEQRA-DVESMIPMGYIGEPEEIAAVAAW-LASSEASYVT 240
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 139 bits (350), Expect = 2e-37
Identities = 56/241 (23%), Positives = 107/241 (44%), Gaps = 9/241 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L VTG S GIG +V++L LGA+V +R L+ + ++ D
Sbjct: 4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCD 63
Query: 774 VTIENDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+ + K+++ V G ++ILVNNAGV+ + + +++N ++ N + H
Sbjct: 64 LLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLS 123
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+L + + G+++ +SS AG +++Y+ +K I ++ +L E + NI+V
Sbjct: 124 QIA-YPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVN 182
Query: 893 CIQAGDVKTELLS---HSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAV 946
+ G + T L+ + + P +E+S I F L P+ S +
Sbjct: 183 SVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAF-LCFPAASYI 241
Query: 947 N 947
Sbjct: 242 T 242
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 138 bits (348), Expect = 4e-37
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 2/199 (1%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
KV VTG+ IG L G + + + LE + S++ D
Sbjct: 3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCD 62
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCI 832
VT E V V V+ + G ID L NNAG F ++ Y +++ ++ +N+ G H +
Sbjct: 63 VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVL 122
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ M ++ G I+N +S AGV+ +A Y +K I ++ +++ NI+V
Sbjct: 123 KAVSRQM-ITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVN 181
Query: 893 CIQAGDVKTELLSHSTDRD 911
I G + +
Sbjct: 182 AISPGYMGPGFMWERQVEL 200
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 135 bits (342), Expect = 1e-36
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 4/196 (2%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L KV V+G + G+G V+ +V GAKVV + + + L + LD
Sbjct: 4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---ADAARYVHLD 60
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT K V + G + +LVNNAG++ +E Y L EW +++VN+ GV I
Sbjct: 61 VTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIR 120
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
++ M G I+NISS G+ YT TK+ + G++ + E+ I+V
Sbjct: 121 AVVKPM-KEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNS 179
Query: 894 IQAGDVKTELLSHSTD 909
I G VKT + +
Sbjct: 180 IHPGLVKTPMTDWVPE 195
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 136 bits (342), Expect = 2e-36
Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 14/243 (5%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
KV VTG+ GIG+ + LV G V + + + + A G + K+DV+
Sbjct: 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD 61
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+ V V + LG D++VNNAGV T +E E + + N+N+KGV+ I +
Sbjct: 62 RDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAV 121
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
+ G I+N S AG LAVY+ +K+ + G++ ++++ I V
Sbjct: 122 EAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCP 181
Query: 897 GDVKTELLSHSTDRDVVDKY---------DISKAVP---VLTTKEISQSIIFALLQPSHS 944
G VKT + + DR V + + +K + + ++++ + + L P
Sbjct: 182 GIVKTPMWAE-IDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSY-LASPDSD 239
Query: 945 AVN 947
+
Sbjct: 240 YMT 242
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 135 bits (341), Expect = 3e-36
Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 8/237 (3%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TG+ +GIG+++ T GA VV D ++ +Q G + D
Sbjct: 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCD 68
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
+T E ++ + +++LG +DILVNNAG + + ++ +N+ H
Sbjct: 69 ITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFD-MPMADFRRAYELNVFSFFHLSQ 127
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ P M + + I+S A + Y +K + + ++ ++NI+V
Sbjct: 128 LVAPEMEKNGGGVIL-TITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNG 186
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
I G + T+ L ++ K + + P + ++I+ + +F L P+ S V+
Sbjct: 187 IAPGAILTDALKSVITPEIEQK--MLQHTPIRRLGQPQDIANAALF-LCSPAASWVS 240
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 136 bits (343), Expect = 5e-36
Identities = 52/240 (21%), Positives = 108/240 (45%), Gaps = 5/240 (2%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS-IIVK 770
N+ KV F+TG +G+G+ + L +LGA+ V +R++D L+ + + G+ +
Sbjct: 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAI 80
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+ DV + V+ V E++ GH +I++NNA + + E+ W + ++ + G
Sbjct: 81 QCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAF 140
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
I ++ +++ L+I++ + K +E +S +L E ++
Sbjct: 141 VTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMR 200
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
IQ G +KT+ D + ++ +P + T +E++ F L S +N
Sbjct: 201 FNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAF-LCSDYASWIN 259
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 134 bits (337), Expect = 1e-35
Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 16/248 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPG-SIIVKK 771
L KV VTGS+SGIG + L GA +V +E ++ L G ++
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D++ V+ +V + ++G IDILVNNAG+ + L+E + E+W+A++ +N+ V H
Sbjct: 62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHG 121
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKV 891
LP M + G I+NI+S G+ A + Y K+ + G + E + + I
Sbjct: 122 TAAALPHMKK-QGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITA 180
Query: 892 TCIQAGDVKTELLS---------HSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALL 939
I G V+T L+ + D++ + +S+ P +T +++ + +F L
Sbjct: 181 NAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVF-LA 239
Query: 940 QPSHSAVN 947
+ + +
Sbjct: 240 SDAAAQIT 247
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 134 bits (338), Expect = 1e-35
Identities = 49/275 (17%), Positives = 90/275 (32%), Gaps = 64/275 (23%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTL-GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
V VTG + GIG +V+DL L VV AR + R + LQ S +LD+
Sbjct: 4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDID 63
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
++ + + E G +D+LVNNAG+ + + + N G +
Sbjct: 64 DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTEL 123
Query: 836 LPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY------------------------ 871
LP + + G ++N+SS VR + K+
Sbjct: 124 LPLI---KPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKG 180
Query: 872 ---------------------FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR 910
+ L ++ I + G V+T++ +
Sbjct: 181 VHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATK 240
Query: 911 DVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSA 945
+ +E +++ ++ L P +
Sbjct: 241 ---------------SPEEGAETPVYLALLPPDAE 260
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 133 bits (335), Expect = 1e-35
Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
K+ VTG+S GIG + + L GAKV+ A + + + L + L+
Sbjct: 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGL---MLN 58
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT ++ V+ ++ AE G +DILVNNAG+ L+ + K EEWN +I N+ V
Sbjct: 59 VTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSK 118
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
++ +M+ +R G I+ I S G G A Y K + G S +L +EV+ R I V
Sbjct: 119 AVMRAMM-KKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNV 177
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
+ G ++T++ +D + I VP + +EI+ ++ F L + +
Sbjct: 178 VAPGFIETDMTRALSDD---QRAGILAQVPAGRLGGAQEIANAVAF-LASDEAAYIT 230
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 133 bits (335), Expect = 3e-35
Identities = 55/248 (22%), Positives = 107/248 (43%), Gaps = 17/248 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKL 772
L KV VTG+ GIG ++ +L G KV+ + E + +++ K
Sbjct: 16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKA 75
Query: 773 DVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+V + D+ ++ E + G +DI+ +N+GV+ F ++ EE++ + +N +G
Sbjct: 76 NVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVA 135
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVT 892
+ R + +I+ A P AVY+G+K IE + + +++D+ I V
Sbjct: 136 REAYKHLEIGGRLILMGSITGQAKAVPK--HAVYSGSKGAIETFARCMAIDMADKKITVN 193
Query: 893 CIQAGDVKTELLS----------HSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALL 939
+ G +KT++ + + VD+Y + P V +I++ + F L
Sbjct: 194 VVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCF-LA 252
Query: 940 QPSHSAVN 947
V
Sbjct: 253 SNDGGWVT 260
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 130 bits (328), Expect = 1e-34
Identities = 60/243 (24%), Positives = 108/243 (44%), Gaps = 18/243 (7%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
L KVI +T ++ GIG+ GAKV+A +L+ L+ I +
Sbjct: 2 GRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-----KYPGIQTRV 56
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
LDVT + + + EV +D+L N AG ++ + + ++W+ +N+N++ +
Sbjct: 57 LDVTKKKQIDQFANEV----ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLM 112
Query: 832 IGNILPSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
I LP ML ++ G+I+N+SS A V+ VY+ TK + G++ ++ + + I+
Sbjct: 113 IKAFLPKMLA-QKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIR 171
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKY---DISKAVP---VLTTKEISQSIIFALLQPSHS 944
C+ G V T L + D K T +EI+ ++ L +
Sbjct: 172 CNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVY-LASDESA 230
Query: 945 AVN 947
V
Sbjct: 231 YVT 233
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 130 bits (327), Expect = 2e-34
Identities = 46/236 (19%), Positives = 88/236 (37%), Gaps = 17/236 (7%)
Query: 721 VTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDV 780
VT G L G V + + L+ + P +L E +
Sbjct: 5 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYP------QLKPMSEQEP 58
Query: 781 KKVVREVLAELGHIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSM 839
+++ V + G +D+LV+N F ++KY +E++ + + + M
Sbjct: 59 AELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQM 118
Query: 840 LHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDV 899
R+ GHI+ I+S P+ L+ YT + ++ AL +E+ + NI V I +
Sbjct: 119 -KKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYL 177
Query: 900 KTELLSHSTDRDVVDKYD-----ISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
+E + + + K + T KE+ + + F L S +
Sbjct: 178 HSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAF-LASGSCDYLT 232
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 129 bits (326), Expect = 3e-34
Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 15/245 (6%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
++V VTG++SGIG ++ + L G +V AR + L L+ A + DV
Sbjct: 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVR 61
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+++ +V V+ G +D+LVNNAG + E W ++ N+ GV +
Sbjct: 62 SVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQV 121
Query: 836 LPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCI 894
L + R + ++ G + A Y+ +K+ + G + AL E++ I V +
Sbjct: 122 LKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAV 181
Query: 895 QAGDVKTELLSHSTDRDVVDKYDIS---------KAVP---VLTTKEISQSIIFALLQPS 942
G V+T + + S D +++S VP + E+++ + + L+ P
Sbjct: 182 CPGFVETPMAA-SVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAY-LIGPG 239
Query: 943 HSAVN 947
+AV
Sbjct: 240 AAAVT 244
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 129 bits (325), Expect = 3e-34
Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 25/221 (11%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
++ + VTG++ GIG LV+ LV ++A AR +++ LK + V
Sbjct: 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK---SIKDSRVHVLP 57
Query: 772 LDVTIENDVKKVVREVLAELGH--IDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGV 828
L VT + + V +V +G + +L+NNAGV+ + + ++VN V
Sbjct: 58 LTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSV 117
Query: 829 LHCIGNILPSMLHSRRPGHIL-----------------NISSNAGVRPFAGLAVYTGTKY 871
+ +LP + ++ +I+ N + Y +K
Sbjct: 118 VLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKA 177
Query: 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV 912
I L ++ D N+ V G V+T L + V
Sbjct: 178 AINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALTV 218
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 129 bits (324), Expect = 4e-34
Identities = 55/237 (23%), Positives = 93/237 (39%), Gaps = 14/237 (5%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L+ K I VTG++SGIG + GA +VAV R L +L+ I D
Sbjct: 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE---AEAIAVVAD 59
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V+ V+ V E L E G + + + AGV + L LE W ++ VN+ G
Sbjct: 60 VSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVAR 119
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ + GLA Y K + G++ L E++ + ++V
Sbjct: 120 KAGEVLEEGGSLVLT----GSVAGLGAFGLAHYAAGKLGVVGLARTLALELARKGVRVNV 175
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
+ G ++T + + A P +E++Q+ +F LL + +
Sbjct: 176 LLPGLIQTPMTAGLPPW---AWEQEVGASPLGRAGRPEEVAQAALF-LLSEESAYIT 228
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 130 bits (327), Expect = 4e-34
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 26/251 (10%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI------DRLENLKTSLQNAPGSII 768
A V+ +TG SSGIG L L + ++ V + RL +L PGS+
Sbjct: 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLE 60
Query: 769 VKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGV 828
+LDV V V G +D+LV NAG+ +E + ++++VN+ G
Sbjct: 61 TLQLDVRDSKSVAAARERV--TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGT 118
Query: 829 LHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+ + LP M R G +L S G+ VY +K+ +EG+ +L +
Sbjct: 119 VRMLQAFLPDMK-RRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFG 177
Query: 889 IKVTCIQAGDVKTELLSH--STDRDVVDKYDI------------SKAVP---VLTTKEIS 931
+ ++ I+ G V T + + +V+D+ DI SK V +E++
Sbjct: 178 VHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVA 237
Query: 932 QSIIFALLQPS 942
+ + AL P
Sbjct: 238 EVFLTALRAPK 248
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 126 bits (318), Expect = 3e-33
Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 15/245 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
L K +TGS+ GIG + V GA+V ++ + + LD
Sbjct: 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---GPAACAIALD 59
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + + + V E+L G IDILVNNA + + + E ++ + +N+ G L +
Sbjct: 60 VTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQ 119
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ +M+ R G I+N++S AG R A + VY TK + ++ + + I V
Sbjct: 120 AVARAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLIRHGINVNA 179
Query: 894 IQAGDVKTELLSHSTDR--------DVVDKYDISKAVP---VLTTKEISQSIIFALLQPS 942
I G V E + K + AVP + ++++ IF L P
Sbjct: 180 IAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIF-LATPE 238
Query: 943 HSAVN 947
+
Sbjct: 239 ADYIV 243
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 124 bits (311), Expect = 2e-32
Identities = 48/237 (20%), Positives = 93/237 (39%), Gaps = 22/237 (9%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ +K + V +S GIG + L GA+V AR + L+ +
Sbjct: 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSG------------HRYV 49
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
V D++K + + ++ +DILV NAG ++ E++ I+ ++ +
Sbjct: 50 VC---DLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVR 106
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
N + + G I+ I+S + + P L + + G L EV+ I V C
Sbjct: 107 NY-LPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNC 165
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
+ G +TE + + + + +P + +EI+ + F L S +
Sbjct: 166 VAPGWTETERVKELLSEEKKKQ--VESQIPMRRMAKPEEIASVVAF-LCSEKASYLT 219
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 122 bits (308), Expect = 8e-32
Identities = 48/249 (19%), Positives = 96/249 (38%), Gaps = 20/249 (8%)
Query: 712 NTLANKVIFVTGSSSGIGEQLVKDLVTL---GAKVVAVARRIDRLENLKTSL--QNAPGS 766
+ L V +TG+S G G L L L G+ ++ AR L LK L Q
Sbjct: 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLK 61
Query: 767 IIVKKLDVTIENDVKKVVRE----VLAELGHIDILVNNA---GVMYFTLMEKYKLEEWNA 819
+++ D+ E V++++ E +L+NNA G + + L E N
Sbjct: 62 VVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNN 121
Query: 820 MINVNIKGVLHCIGNILPSML-HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISG 878
+N+ +L L + ++NISS ++P+ G +Y K + +
Sbjct: 122 YWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQ 181
Query: 879 ALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY--DISKAVP---VLTTKEISQS 933
L E + +++V G + ++ + + + + K ++ +Q
Sbjct: 182 VLAAE--EPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQK 239
Query: 934 IIFALLQPS 942
++ L + +
Sbjct: 240 LLGLLQKDT 248
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 120 bits (302), Expect = 3e-31
Identities = 49/237 (20%), Positives = 100/237 (42%), Gaps = 19/237 (8%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
++ + VTG + GIG + + L G KV R + L ++D
Sbjct: 5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-----------FGVEVD 53
Query: 774 VTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
VT + V + V G +++LV+NAG+ + + E++ +IN N+ G +
Sbjct: 54 VTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGA-FRVA 112
Query: 834 NILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTC 893
+ + G ++ I S +G+ A Y +K + G++ ++ +E+S N+
Sbjct: 113 QRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKANVTANV 172
Query: 894 IQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
+ G + T++ +R + + +P V T E++ + F L S ++
Sbjct: 173 VAPGYIDTDMTRALDER---IQQGALQFIPAKRVGTPAEVAGVVSF-LASEDASYIS 225
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 119 bits (300), Expect = 6e-29
Identities = 32/144 (22%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 8 DYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
+Y + +H +F Q + P+ +A+V + +T+ +L+ + + I +G + V
Sbjct: 18 EYPRDKTIHQLFEEQVSKRPNNVAIVC-ENEQLTYHELNVKANQLARIFIEKGIGKDTLV 76
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
G++ME+ ++ I +A+ KAGG Y+P++ YP ++ +LDD++ +++T+ + +
Sbjct: 77 GIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN 136
Query: 128 TSVPKVKLENDFLSKMISENEKFH 151
+ + I E H
Sbjct: 137 IQFNGQVEIFEEDTIKIREGTNLH 160
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 112 bits (281), Expect = 2e-28
Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 30/243 (12%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
+ VTG +SG+G L G +VV + R + + +I + DVT
Sbjct: 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGED------------LIYVEGDVTR 49
Query: 777 ENDVKKVVREVLAELG---HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIG 833
E DV++ V E + + LE + ++ VN+ G + +
Sbjct: 50 EEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLR 109
Query: 834 NILPSM-----LHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRN 888
+M + G I+N +S A G A Y +K + ++ +E++
Sbjct: 110 LAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGWG 169
Query: 889 IKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL----TTKEISQSIIFALLQPSHS 944
I+V + G T LL ++ K ++ VP +E + ++ L +
Sbjct: 170 IRVVTVAPGLFDTPLLQGLPEK---AKASLAAQVPFPPRLGRPEEYAALVLHIL---ENP 223
Query: 945 AVN 947
+N
Sbjct: 224 MLN 226
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 110 bits (275), Expect = 1e-27
Identities = 32/242 (13%), Positives = 75/242 (30%), Gaps = 27/242 (11%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
+ + V G +G + V+ V ++ + + ++ K+ +
Sbjct: 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASAS----------VIVKMTDS 51
Query: 776 IENDVKKVVREVLAELG--HIDILVNNAGVM-YFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+V EV LG +D ++ AG K + + M +I
Sbjct: 52 FTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISS 111
Query: 833 GNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS--DRNIK 890
H + G + + A + G+ Y K + + +L + S
Sbjct: 112 HLA---TKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAA 168
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950
+ + T +R + + D S P+ + + ++ + + + L
Sbjct: 169 AIAVLPVTLDTP-----MNRKSMPEADFSSWTPL---EFLVETFHD-WITGNKRPNSGSL 219
Query: 951 IE 952
I+
Sbjct: 220 IQ 221
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Score = 110 bits (276), Expect = 1e-27
Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 15/243 (6%)
Query: 714 LANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
L+ K V G ++ +G + L GA+V ++ + +RL L A G ++ +
Sbjct: 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVA-LSYQAERLRPEAEKLAEALGGALLFR 64
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLE----EWNAMINVNIKG 827
DVT + ++ + V G +D LV+ ME ++ +W + V+
Sbjct: 65 ADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYS 124
Query: 828 VLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDR 887
++ P + G I+ ++ A + V K +E L E+ +
Sbjct: 125 LVAVARRAEPLLREG---GGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPK 181
Query: 888 NIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSHS 944
++V I AG V+T + +++ P +T +E+ +F LL P S
Sbjct: 182 GVRVNAISAGPVRTVAARSIPGFTKMYDR-VAQTAPLRRNITQEEVGNLGLF-LLSPLAS 239
Query: 945 AVN 947
+
Sbjct: 240 GIT 242
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (272), Expect = 3e-27
Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 15/235 (6%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
+ V +TG +SG+G + LV GA V + E L N
Sbjct: 3 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS 62
Query: 774 VTIENDVKKVVREVLAELG---HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
+ + + + + + + + LE++ +++VN+ G +
Sbjct: 63 EKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFN 122
Query: 831 CIGNILPSML-----HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS 885
I + M + G I+N +S A G A Y+ +K I G++ + ++++
Sbjct: 123 VIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLA 182
Query: 886 DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL----TTKEISQSIIF 936
I+V I G T LL+ + V + ++ VP E + +
Sbjct: 183 PIGIRVMTIAPGLFGTPLLTSLPE-KVCNF--LASQVPFPSRLGDPAEYAHLVQA 234
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Score = 106 bits (266), Expect = 2e-26
Identities = 41/244 (16%), Positives = 84/244 (34%), Gaps = 16/244 (6%)
Query: 714 LANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
L+ K I VTG +S I + + + GA++ + D+L+ GS IV +
Sbjct: 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQLGSDIVLQ 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEK-----YKLEEWNAMINVNIK 826
DV + + + E+ D V++ G ++ E + +++
Sbjct: 62 CDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSY 121
Query: 827 GVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSD 886
+ + +L +S R V K +E + +
Sbjct: 122 SFVAMAKACRSMLNPGSA---LLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGP 178
Query: 887 RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VLTTKEISQSIIFALLQPSH 943
++V I AG ++T S D + + P +T +++ S F L
Sbjct: 179 EGVRVNAISAGPIRTLAASGIKDFRKMLAH-CEAVTPIRRTVTIEDVGNSAAF-LCSDLS 236
Query: 944 SAVN 947
+ ++
Sbjct: 237 AGIS 240
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Score = 106 bits (264), Expect = 5e-26
Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 31/255 (12%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRL-ENLKTSLQNAPGSIIVK-----K 771
+TG + IG + L G +VV R + + L L A V
Sbjct: 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLS 62
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGV-----------MYFTLMEKYKLEEWNAM 820
L ++ + + ++ G D+LVNNA K + +
Sbjct: 63 LSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAEL 122
Query: 821 INVNIKGVLHCIGNILPSML----HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876
N L I R ++N+ P G VYT K+ + G+
Sbjct: 123 FGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHALGGL 182
Query: 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL----TTKEISQ 932
+ A E++ R+I+V + G ++ + + VP+ + +I+
Sbjct: 183 TRAAALELAPRHIRVNAVAPGLSLLPPAMPQETQE-----EYRRKVPLGQSEASAAQIAD 237
Query: 933 SIIFALLQPSHSAVN 947
+I F L+ +
Sbjct: 238 AIAF-LVSKDAGYIT 251
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 104 bits (260), Expect = 1e-25
Identities = 37/243 (15%), Positives = 82/243 (33%), Gaps = 27/243 (11%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDV 774
+ KVI V G +G +++ G V+ + + + S I+ +
Sbjct: 2 SGKVI-VYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD----------SNILVDGNK 50
Query: 775 TIENDVKKVVREVLAEL--GHIDILVNNAG-VMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
+ ++ + + L +D + AG + K ++ + MI ++
Sbjct: 51 NWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIA 110
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVS--DRNI 889
H + G + + A + P + Y K + ++ +L + S N
Sbjct: 111 AKLA---TTHLKPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNS 167
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949
V I + T +R + D S P+ IS+ ++ + S +
Sbjct: 168 AVLTIMPVTLDTP-----MNRKWMPNADHSSWTPL---SFISEHLLKWTTETSSRPSSGA 219
Query: 950 LIE 952
L++
Sbjct: 220 LLK 222
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 105 bits (263), Expect = 2e-24
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 1/104 (0%)
Query: 15 LHYMFRNQAKRTPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMER 73
++ M R A R PD A+ G +T +L + V L G V V+
Sbjct: 4 VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 74 CLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVIT 117
+ I+ +A+H+ G L A L ++ + + +
Sbjct: 64 SADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI 107
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 105 bits (263), Expect = 3e-24
Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 6/150 (4%)
Query: 9 YDAEGA-----LHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIV 63
Y G + R++A + D+IA+ ++++LD D + G
Sbjct: 16 YRKNGCWAGETFGDLLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQ 74
Query: 64 GSTVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMD 123
V V + E+ A+ + G + S+ + + + A+ + I Y
Sbjct: 75 KDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG 134
Query: 124 RLERTSVPKVKLENDFLSKMISENEKFHNH 153
R+ +V+ + L +I E
Sbjct: 135 FDYRSLARQVQSKLPTLKNIIVAGEAEEFL 164
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 99.0 bits (245), Expect = 1e-23
Identities = 43/215 (20%), Positives = 87/215 (40%), Gaps = 20/215 (9%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTL---GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD 773
I +TG + G+G LVK L+ L + R ++ + L+ L +I + ++D
Sbjct: 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE-DLAKNHSNIHILEID 61
Query: 774 VTIENDVKKVVRE--VLAELGHIDILVNNAGVMYFTLMEKY-KLEEWNAMINVNIKGVLH 830
+ + K+V + + + +++L NNAG+ + + +E + N +
Sbjct: 62 LRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIM 121
Query: 831 CIGNILPSMLHSRRP----------GHILNISSNAGV---RPFAGLAVYTGTKYFIEGIS 877
LP + + + I+N+SS G G+ Y +K + +
Sbjct: 122 LAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAAT 181
Query: 878 GALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV 912
+L ++ + I + G VKT++ S DV
Sbjct: 182 KSLSVDLYPQRIMCVSLHPGWVKTDMGGSSAPLDV 216
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 103 bits (257), Expect = 2e-23
Identities = 22/164 (13%), Positives = 56/164 (34%), Gaps = 4/164 (2%)
Query: 12 EGALHYMFRNQAKR---TPDKIAVVD-HDGRSITFKQLDEWTDIVGTYLINQGCIVGSTV 67
+G KR P IA D H +IT+ + E + + + G +
Sbjct: 16 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 75
Query: 68 GVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLER 127
V E L++ + + G P Y L + ++ ++P++V + + ++
Sbjct: 76 VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILN 135
Query: 128 TSVPKVKLENDFLSKMISENEKFHNHVPIAEEYRKNLVQNFESL 171
++ + ++ + F + + ++ +
Sbjct: 136 VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFV 179
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 96.1 bits (238), Expect = 1e-22
Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 56/262 (21%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
+I ++G ++GIG K L G ++V + R + D++
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-----------------DLST 44
Query: 777 ENDVKKVVREVLAEL-GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
K+ + +VLA+ +D LV AG+ T + +++VN G +
Sbjct: 45 AEGRKQAIADVLAKCSKGMDGLVLCAGLGPQT-------KVLGNVVSVNYFGATELMDAF 97
Query: 836 LPSM--------------------------LHSRRPGHILNISSNAGVRPFAG-LAVYTG 868
LP++ + G + G Y G
Sbjct: 98 LPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAG 157
Query: 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP---VL 925
+K + + +++ I G +T LL + P
Sbjct: 158 SKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGRRA 217
Query: 926 TTKEISQSIIFALLQPSHSAVN 947
E++ I F L+ P+ S V+
Sbjct: 218 EPSEMASVIAF-LMSPAASYVH 238
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 97.7 bits (242), Expect = 1e-21
Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 3/121 (2%)
Query: 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDG---RSITFKQLDEWTDIVGTYLINQGCIVGS 65
D E L A K V T+ ++ + + L G VG
Sbjct: 7 MDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 66
Query: 66 TVGVLMERCLEWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
V L +Y A+ G P + +L+ A+ +++ + +
Sbjct: 67 RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 126
Query: 126 E 126
E
Sbjct: 127 E 127
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 88.9 bits (220), Expect = 1e-18
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 22 QAKRTPDKIAVV-----DHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLE 76
+ D+ A++ + I++++L L++ G G V + M E
Sbjct: 81 HLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE 140
Query: 77 WTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125
++ +A + G + + + P + + D+ +VIT E +
Sbjct: 141 AAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAG 189
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Score = 83.6 bits (205), Expect = 4e-18
Identities = 44/239 (18%), Positives = 92/239 (38%), Gaps = 7/239 (2%)
Query: 714 LANKVIFVTG--SSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKK 771
L K + G ++ I + + GA + + LE + S V +
Sbjct: 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLN-ESLEKRVRPIAQELNSPYVYE 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
LDV+ E K + V +LG +D +V++ +E LE + N ++ ++
Sbjct: 62 LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYS 121
Query: 832 IGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF-IEGISGALRQEVSDRNIK 890
+ + ++ G + S G + G +E L ++ +I+
Sbjct: 122 LIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIR 181
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVP--VLTTKEISQSIIFALLQPSHSAVN 947
V + AG ++T S D ++ K++ A ++ +E+ + ++ LL S V+
Sbjct: 182 VNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMY-LLSSLSSGVS 239
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 80.1 bits (196), Expect = 5e-17
Identities = 35/236 (14%), Positives = 74/236 (31%), Gaps = 18/236 (7%)
Query: 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR----IDRLENLKTSLQNAPGSIIVK 770
+ VTG + G+G Q+ + L GA + + R D L L+ V
Sbjct: 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVA 67
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
DVT V++++ + + + + + A + ++ E + G +
Sbjct: 68 ACDVTDRESVRELLGGI-GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARN 126
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIK 890
+ SS A GL Y +++ L Q+ +
Sbjct: 127 LHELTRE-----LDLTAFVLFSSFASAFGAPGLGGYAPGNAYLD----GLAQQRRSDGLP 177
Query: 891 VTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAV 946
T + G ++ D + V + + +++ AL + +
Sbjct: 178 ATAVAWGTWAGSGMAEGPVADRFRR----HGVIEMPPETACRALQNALDRAEVCPI 229
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 78.0 bits (191), Expect = 5e-17
Identities = 24/180 (13%), Positives = 51/180 (28%), Gaps = 13/180 (7%)
Query: 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIV 769
G ++ K V + +G + L GA+VV R++D+ + S+ N + V
Sbjct: 17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV-NKRFKVNV 75
Query: 770 KKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVL 829
+ + + V + + +E W ++ I
Sbjct: 76 TAAETADDASRAEAV-------KGAHFVFTAGAIG----LELLPQAAWQNESSIEIVADY 124
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ + + + G G GL + I + + I
Sbjct: 125 NAQPPLGIGGIDATDKGKEYGGKRAFGALGIGGLK-LKLHRACIAKLFESSEGVFDAEEI 183
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Score = 80.1 bits (196), Expect = 6e-17
Identities = 50/272 (18%), Positives = 81/272 (29%), Gaps = 48/272 (17%)
Query: 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQ--------------- 761
V VTG++ +G + + L G V R L +L
Sbjct: 4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLS 63
Query: 762 ---NAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWN 818
AP S VT+ ++V G D+LVNNA Y T + + +
Sbjct: 64 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHE 123
Query: 819 A--------------MINVNIKGVLHCIGNILP-----SMLHSRRPGHILNISSNAGVRP 859
+ N I H I+N+ +P
Sbjct: 124 PCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQP 183
Query: 860 FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDIS 919
G +YT K +EG++ + E++ I+V + G D
Sbjct: 184 LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV-----DDMPPAVWEGHR 238
Query: 920 KAVPVL----TTKEISQSIIFALLQPSHSAVN 947
VP+ + E+S +IF L +
Sbjct: 239 SKVPLYQRDSSAAEVSDVVIF-LCSSKAKYIT 269
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.6 bits (203), Expect = 9e-17
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 22 QAKRTPDKIAVV-----DHDGRSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCL 75
A +TP+K A++ G SIT+K+L E V L + G G TV V M
Sbjct: 68 HALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP 127
Query: 76 EWTISYIAIHKAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLERTSVPKV 133
E I+ +AI + G + + + L ++D +VIT E + ++
Sbjct: 128 EAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRI 185
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.7 bits (196), Expect = 1e-16
Identities = 62/282 (21%), Positives = 99/282 (35%), Gaps = 40/282 (14%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+L+TG G++G HL K L+ ++ +D N +T
Sbjct: 3 RILITGGAGFVGSHLTDK--------------------LMMDGHEVT-----VVD-NFFT 36
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYN---ALYKSNVLAT 437
R V+ + E L N D L E+D I H A+ + K+N + T
Sbjct: 37 GRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGT 96
Query: 438 KNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYL 497
N++ + + ST +Y + Q + + + + Y + K V+E +
Sbjct: 97 LNMLGLAKRVGAR-LLLASTSEVYGDPEVHPQSE-DYWGHVNPIGPRACYDEGKRVAETM 154
Query: 498 VLN-AGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAIT--RLGYAPDIDWYLEFT 554
Q G+ V + R N G N V ++ +IL+A+ L F
Sbjct: 155 CYAYMKQEGVEVRVARIFNTFGPRMHMNDGRV-VSNFILQALQGEPLTVYGSGSQTRAFQ 213
Query: 555 PVDFLTKSLVQLTT-----NVNNANKIYNFINTNPIHIKTLV 591
V L LV L VN N + I IK LV
Sbjct: 214 YVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLV 255
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 77.9 bits (191), Expect = 9e-16
Identities = 57/299 (19%), Positives = 110/299 (36%), Gaps = 40/299 (13%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+L+TG G++G +++ + +T+ T+ + + L+ L DI
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVN-IDKLTYAGNLESLSDISES----------- 49
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYN---ALYKSNVLAT 437
+R +D+ + + Y+ D ++H AA ++ A ++N++ T
Sbjct: 50 NRYNFEHADIC-----DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGT 104
Query: 438 KNLIEFS---------FLNKIKSFHYVSTDSIYPSTSENFQEDYTVA----DFDDFMTTT 484
L+E + FH++STD +Y + + +V +
Sbjct: 105 YALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPS 164
Query: 485 SGYGQSKIVSEYLVLNAGQM-GLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL--KAITRL 541
S Y SK S++LV + GLP + C N G F + + L L K +
Sbjct: 165 SPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY 224
Query: 542 GYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYN 600
G D ++ V+ ++L + T A + YN N +V +
Sbjct: 225 G---KGDQIRDWLYVEDHARALHMVVTE-GKAGETYNIGGHNEKKNLDVVFTICDLLDE 279
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 39.0 bits (90), Expect = 0.002
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 16/143 (11%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGS--IIVKKLDVTI 776
I +TG + IG +V+ ++ V ++ NL+ SL + S + D+
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLE-SLSDISESNRYNFEHADICD 61
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH----CI 832
++ ++ + D +++ A + I NI G
Sbjct: 62 SAEITRIFEQY-----QPDAVMHLAAESHVDRSITGPAA----FIETNIVGTYALLEVAR 112
Query: 833 GNILPSMLHSRRPGHILNISSNA 855
+ +IS++
Sbjct: 113 KYWSALGEDKKNNFRFHHISTDE 135
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 76.4 bits (187), Expect = 2e-15
Identities = 46/319 (14%), Positives = 97/319 (30%), Gaps = 32/319 (10%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
L+TGVTG G +L +FL++ + R + +R++ H+ D +
Sbjct: 4 ALITGVTGQDGSYLA-EFLLEKGYEVHGIKRRASSFN-TERVD------HIYQDPHTCNP 55
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYN---ALYKSNVLATK 438
+ L DLS + E + D + + A ++ + + + + T
Sbjct: 56 KFHLHYGDLSDTSNLTRILRE-----VQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTL 110
Query: 439 NLIE---FSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSE 495
L+E F L K F+ ST +Y E Q S Y +K+ +
Sbjct: 111 RLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQ------KETTPFYPRSPYAVAKLYAY 164
Query: 496 YLVLNAGQM-GLPVSIVRCGNIGG---SLEFKNWNLVDLNLYILKAITRLGYAPDIDWYL 551
++ +N + G+ N F + I + + Y ++D
Sbjct: 165 WITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLR 224
Query: 552 EFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWF 610
++ K + + + ++ V + G ++
Sbjct: 225 DWGHAKDYVKMQWMMLQ--QEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEE 282
Query: 611 HKLNKRELSEPLIQILRNK 629
+ +
Sbjct: 283 KGIVVSVTGHDAPGVKPGD 301
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 45.6 bits (107), Expect = 2e-05
Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 27/182 (14%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-----RLENLKTSLQNAPGSIIVKK 771
KV +TG + G L + L+ G +V + RR R++++ +
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61
Query: 772 LDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHC 831
D++ +++ +++REV D + N + + E +V+ G L
Sbjct: 62 GDLSDTSNLTRILREV-----QPDEVYNLGAMSHV----AVSFESPEYTADVDAMGTLRL 112
Query: 832 IGNILPSMLHSRRPGHILNISSNA--GVR---------PFAGLAVYTGTKYFIEGISGAL 880
+ I L + S++ G+ PF + Y K + I+
Sbjct: 113 LEAIR--FLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNY 170
Query: 881 RQ 882
R+
Sbjct: 171 RE 172
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 71.8 bits (175), Expect = 5e-14
Identities = 32/203 (15%), Positives = 59/203 (29%), Gaps = 46/203 (22%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
V + G G +G + ++ +++L+ L+L +
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQRGD-------------------VELVLRTRDELNLLDSRA 45
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFV----NLILPYNALYKSNVLAT 437
S+ ID + AAA V N++
Sbjct: 46 VHDFFASE-------------------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIE 86
Query: 438 KNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDYTVADFDDFMTTTSGYGQSKIVSEY 496
N+I + N + ++ + IYP ++ E + T Y +KI
Sbjct: 87 SNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELL--QGTLEPTNEPYAIAKIAGIK 144
Query: 497 LVLN-AGQMGLPVSIVRCGNIGG 518
L + Q G V N+ G
Sbjct: 145 LCESYNRQYGRDYRSVMPTNLYG 167
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Score = 65.6 bits (160), Expect = 5e-14
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 206 QKNIAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQ 265
+ +A+IW ++L + + +NFF+IGGHSL A ++++ E + L +K LFA PT++
Sbjct: 9 ESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIK 68
Query: 266 EMAALLE 272
+A +
Sbjct: 69 ALAQYVA 75
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.9 bits (167), Expect = 9e-14
Identities = 22/185 (11%), Positives = 55/185 (29%), Gaps = 2/185 (1%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI 776
+V + G + +G+ L L TLG ++V +RR ++ E + G + +
Sbjct: 2 RVALLGG-TGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNED 60
Query: 777 ENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNIL 836
+ + + ID + ++ ++ + +
Sbjct: 61 AAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIV- 119
Query: 837 PSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQA 896
+L S + L+ A + + S + + + + A
Sbjct: 120 AEVLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDA 179
Query: 897 GDVKT 901
G +
Sbjct: 180 GPLSN 184
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 70.2 bits (171), Expect = 2e-13
Identities = 55/295 (18%), Positives = 105/295 (35%), Gaps = 31/295 (10%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
+L+TG G++G H +++ L P +L L +L +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGA-----YPDVPADEVIVLDSLTYA--GNRANLAPVDAD 54
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILP---YNALYKSNVLAT 437
RL V D+ + +D I+H AA ++ + ++NV T
Sbjct: 55 PRLRFVHGDIR-------DAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGT 107
Query: 438 KNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYL 497
+ L++ + + +VST+ +Y S + + S Y SK S+ +
Sbjct: 108 QTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTE------SSPLEPNSPYAASKAGSDLV 161
Query: 498 VLNAGQM-GLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITR--LGYAPDIDWYLEFT 554
+ GL V I RC N G + L+ L++ + L D E+
Sbjct: 162 ARAYHRTYGLDVRITRCCNNYGPYQHPE-KLI--PLFVTNLLDGGTLPLYGDGANVREWV 218
Query: 555 PVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSV-LNTYGYNIKTVPYEK 608
D + + + A +IY+ + + L + L++ G + +V
Sbjct: 219 HTDDHCRGIALVLAG-GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVA 272
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.3 bits (146), Expect = 4e-12
Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 206 QKNIAKIWCKILNLY---TLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHP 262
Q+++ K IL + ++ D + ++G SL + E L L I+++
Sbjct: 6 QRDLVKAVAHILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLVLPIREVR-QL 64
Query: 263 TVQEMAAL 270
T++++ +
Sbjct: 65 TLRKLQEM 72
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.8 bits (159), Expect = 6e-12
Identities = 37/201 (18%), Positives = 68/201 (33%), Gaps = 19/201 (9%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
L+TG+TG G +L +FL++ + VR + + R+E + ++
Sbjct: 4 ALITGITGQDGSYLA-EFLLEKGYEVHGIVRRSSSFN-TGRIEHLYKNPQAHIE-----G 56
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLI 441
+ L DL+ +K +E EI + + + + T L+
Sbjct: 57 NMKLHYGDLTDSTCLVKIINEVK--PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLL 114
Query: 442 EF---SFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLV 498
+ L F+ ST +Y E Q S YG +K+ + ++V
Sbjct: 115 DAVKTCGLINSVKFYQASTSELYGKVQEIPQ------KETTPFYPRSPYGAAKLYAYWIV 168
Query: 499 LN-AGQMGLPVSIVRCGNIGG 518
+N L N
Sbjct: 169 VNFREAYNLFAVNGILFNHES 189
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 1e-04
Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 28/183 (15%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-----RLENLKTSLQ-NAPGSIIVK 770
V +TG + G L + L+ G +V + RR R+E+L + Q + G++ +
Sbjct: 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLH 61
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
D+T + K++ EV + ++ + + +V+ G L
Sbjct: 62 YGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFD---------LAEYTADVDGVGTLR 112
Query: 831 CIGNILPSMLHSRRPGHILNISSNAGVR-----------PFAGLAVYTGTKYFIEGISGA 879
+ + L + S++ PF + Y K + I
Sbjct: 113 LLDAVKTCGLINSV--KFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVN 170
Query: 880 LRQ 882
R+
Sbjct: 171 FRE 173
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 60.0 bits (144), Expect = 5e-10
Identities = 44/300 (14%), Positives = 94/300 (31%), Gaps = 36/300 (12%)
Query: 300 NVRVQCFWKSVQLNSNKLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTL 359
+ + +W + N + +TG G++ H+ + L +
Sbjct: 4 ELEREQYWP----SENL----KISITGAGGFIASHIA-RRLKHEGHYVIAS--------- 45
Query: 360 LQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAF 419
D HM+ D+ D LV + L + ++V +
Sbjct: 46 -----DWKKNEHMTEDMFC--DEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQS 98
Query: 420 VNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDD 479
++ + +N + + N+IE + +N IK F Y S+ IYP + + ++ + D
Sbjct: 99 -----NHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDA 153
Query: 480 FMT-TTSGYGQSKIVSEYLVLN-AGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA 537
+ +G K+ +E L + G+ I R NI G +
Sbjct: 154 WPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGG-REKAPAAFCR 212
Query: 538 ITRLGYAPDIDWYLEFTPVDFLTKSL---VQLTTNVNNANKIYNFINTNPIHIKTLVSVL 594
+ W F L ++ + N + + + + ++
Sbjct: 213 KAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMV 272
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Score = 58.6 bits (140), Expect = 8e-10
Identities = 39/251 (15%), Positives = 85/251 (33%), Gaps = 18/251 (7%)
Query: 714 LANKVIFVTG--SSSGIGEQLVKDLVTLGAKVVAVARRIDRL-ENLKTSLQNAPGSIIVK 770
L K I V+G + S I + + GA++V RL + + L + +
Sbjct: 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELD 63
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLE-EWNAMINVNIKGVL 829
+ + V E + +D +V++ G M T M A ++ I
Sbjct: 64 VQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISA 123
Query: 830 HCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNI 889
+ ++ ++L PG + R T K +E ++ + +E +
Sbjct: 124 YSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTVAKSALESVNRFVAREAGKYGV 183
Query: 890 KVTCIQAGDVKTELLSHSTDRDVVDKYD---------ISKAVP----VLTTKEISQSIIF 936
+ + AG ++T +S + ++ + P + +++++
Sbjct: 184 RSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCA 243
Query: 937 ALLQPSHSAVN 947
LL A
Sbjct: 244 -LLSDWLPATT 253
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 57.6 bits (137), Expect = 3e-09
Identities = 23/231 (9%), Positives = 63/231 (27%), Gaps = 35/231 (15%)
Query: 716 NKVIFVTG--SSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKL- 772
+ F+ G ++G G + K+L K++ +K + ++
Sbjct: 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKD 61
Query: 773 -------------------------------DVTIENDVKKVVREVLAELGHIDILVNNA 801
++ ++ V + + G I++LV++
Sbjct: 62 KKMNILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSL 121
Query: 802 GVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA 861
+ + ++ + + I +
Sbjct: 122 ANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPG 181
Query: 862 GLAVYTGTKYFIEGISGALRQEVS-DRNIKVTCIQAGDVKTELLSHSTDRD 911
+ K +E + L + + NI++ I AG +K+ + +
Sbjct: 182 YGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAINKLN 232
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 55.9 bits (133), Expect = 8e-09
Identities = 42/272 (15%), Positives = 77/272 (28%), Gaps = 40/272 (14%)
Query: 714 LANKVIFVTG--SSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIV-- 769
L K F+ G +G G + K L GA+++ + + V
Sbjct: 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLP 65
Query: 770 ------------------------------KKLDVTIENDVKKVVREVLAELGHIDILVN 799
K+ + V++ V + G IDILV+
Sbjct: 66 DGSLMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVH 125
Query: 800 NAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP 859
+ + + ++ + + I +
Sbjct: 126 SLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIMNPGGASISLTYIASERII 185
Query: 860 FAGLAVYTGTKYFIEGISGALRQE-VSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDI 918
+ K +E + L E +NI+V I AG + + D + +Y
Sbjct: 186 PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTMIEY-S 244
Query: 919 SKAVP---VLTTKEISQSIIFALLQPSHSAVN 947
P LT E+ + F L+ P SA+
Sbjct: 245 YNNAPIQKTLTADEVGNAAAF-LVSPLASAIT 275
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 53.8 bits (128), Expect = 5e-08
Identities = 44/302 (14%), Positives = 92/302 (30%), Gaps = 24/302 (7%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
L+TGV G++G +LL + L+ + L SL
Sbjct: 18 VWLITGVAGFIGSNLL-ETLLKLDQKVVGLDN-------FATGHQRNLDEVRSLVSEKQW 69
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNL 440
++ D + L + + + + + I +N+ N+
Sbjct: 70 SNFKFIQGD----IRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNM 125
Query: 441 IEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN 500
+ + K++SF Y ++ S Y + + D S Y +K V+E
Sbjct: 126 LIAARDAKVQSFTYAASSSTYGDHPGLPKVE------DTIGKPLSPYAVTKYVNELYADV 179
Query: 501 AG-QMGLPVSIVRCGNI---GGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPV 556
G +R N+ ++ + + D + +F +
Sbjct: 180 FSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYI 239
Query: 557 DFLTKSLVQ-LTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYEKWFHKLNK 615
+ ++ + T ++ N++YN + L L V Y + +
Sbjct: 240 ENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDG-LAENGVSYHREPVYRDF 298
Query: 616 RE 617
RE
Sbjct: 299 RE 300
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Score = 48.9 bits (116), Expect = 5e-08
Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 209 IAKIWCKILNL--YTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQE 266
+I + + T+D++ F E+G S+ + +E +L + +++ V++
Sbjct: 13 FVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKD 72
Query: 267 MAALLENKSNE 277
+ ++ K E
Sbjct: 73 LIDIVIKKLEE 83
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 52.3 bits (124), Expect = 1e-07
Identities = 37/211 (17%), Positives = 77/211 (36%), Gaps = 27/211 (12%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
VL+TG +GY+G H + L + + +++L +E + K
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK----------- 50
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYN---ALYKSNVLAT 437
V+ D+ + + + ID +IH A + Y +NV T
Sbjct: 51 -HPTFVEGDIR-----NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGT 104
Query: 438 KNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYL 497
LI +K+F + S+ ++Y + + YG+SK++ E +
Sbjct: 105 LRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSP-----YGKSKLMVEQI 159
Query: 498 VLNAGQM--GLPVSIVRCGNIGGSLEFKNWN 526
+ + + ++++R N G+ +
Sbjct: 160 LTDLQKAQPDWSIALLRYFNPVGAHPSGDMG 190
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 0.002
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-RLENLKTSLQNAPGSIIVKKLDVTIE 777
+ VTG S IG L+ G V+ + + + L + + D+ E
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+ +++ + ID +++ AG+ + LE + N+ G L I
Sbjct: 63 ALMTEILHDH-----AIDTVIHFAGLKAVGESVQKPLE----YYDNNVNGTLRLI 108
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Score = 47.3 bits (112), Expect = 3e-07
Identities = 7/50 (14%), Positives = 17/50 (34%)
Query: 225 DENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENK 274
D F +G SL + ++ + + L + T + + +
Sbjct: 31 DVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNAS 80
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 51.1 bits (121), Expect = 3e-07
Identities = 47/301 (15%), Positives = 100/301 (33%), Gaps = 31/301 (10%)
Query: 318 KYGNVLLTGVTGYLGIHLLQKFL---VDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSL 374
++ N+++TG G++G + + D T+ + NK L+ +
Sbjct: 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG--------- 51
Query: 375 DLNNYTDRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNV 434
DR+ LV D++ L K + ++ + + + + + +N
Sbjct: 52 ------DRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLND----PSPFIHTNF 101
Query: 435 LATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTT------TSGYG 488
+ T L+E + I+ FH+VSTD +Y + T +S Y
Sbjct: 102 IGTYTLLEAARKYDIR-FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYS 160
Query: 489 QSKIVSEYLVLN-AGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDI 547
+K S+ +V G+ +I C N G + + IL I + +
Sbjct: 161 STKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGI-KPKLYGEG 219
Query: 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIKTVPYE 607
++ + + + + T + + + L +L G +
Sbjct: 220 KNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHV 279
Query: 608 K 608
Sbjct: 280 T 280
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
++ VTG++ + +V+ L+ G KV AR +L NL+ K+ D
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ------------KRWDAK 58
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCI 832
+ V E + + G D ++ A + +++ ++ I G L+ +
Sbjct: 59 YPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNAL 115
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 38/305 (12%), Positives = 83/305 (27%), Gaps = 39/305 (12%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
VL+TG G++ H++++ L++ + R LQ+ D
Sbjct: 14 VLVTGANGFVASHVVEQ-LLEHGYKVRGTARSASKLANLQKR----------WDAKYPGR 62
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLI 441
V D+ Q Y + + H A+ V+ Y+ + + T N +
Sbjct: 63 FETAVVEDML-------KQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNAL 115
Query: 442 EFS-FLNKIKSFHYVSTDS--------------IYPSTSENFQEDYTVADFDDFMTTTSG 486
+ +K F S+ S + + D +
Sbjct: 116 RAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWV 175
Query: 487 YGQSKIVSEYLVLNAGQMGLPVSIVRCGNIG---GSLEFKNWNLVDLNLYILKAIT-RLG 542
Y SK +E P + G++ + +++ +
Sbjct: 176 YAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVS 235
Query: 543 YAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTYGYNIK 602
A + + + + + + T+++ Y K
Sbjct: 236 PALALMPPQYYVSAVDIGLLHLGCLVL-PQIERRRVYGTAGTFDWNTVLATFRKL-YPSK 293
Query: 603 TVPYE 607
T P +
Sbjct: 294 TFPAD 298
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} Length = 82 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Score = 43.8 bits (103), Expect = 3e-06
Identities = 8/51 (15%), Positives = 21/51 (41%)
Query: 222 LDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLE 272
+ D F ++G SL + + + + L+ + + T +E+ +
Sbjct: 26 GELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVN 76
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 47.3 bits (111), Expect = 5e-06
Identities = 31/218 (14%), Positives = 70/218 (32%), Gaps = 21/218 (9%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
L+TG+TG G +L K L++ + V + T RL ++ ++
Sbjct: 3 ALVTGITGQDGAYLA-KLLLEKGYRVHGLVARRSSDT-RWRLRELGIE-----------G 49
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLI 441
+ D++ + + E+ + + + L +L+
Sbjct: 50 DIQYEDGDMADACSVQRAVIKAQ--PQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLL 107
Query: 442 EFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN- 500
E ++ Y ++ S + ++D + S YG +K+ ++ +N
Sbjct: 108 EAIRQFSPETRFYQASTSEMFGLIQAERQDE-----NTPFYPRSPYGVAKLYGHWITVNY 162
Query: 501 AGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI 538
GL S N L + + + +
Sbjct: 163 RESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIK 200
|
| >d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} Length = 83 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Hypothetical protein Atu2571 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 43.0 bits (101), Expect = 7e-06
Identities = 7/66 (10%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 209 IAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAH--PTVQE 266
+AK + T+ + + + G S + + + E + L +++
Sbjct: 9 LAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKA 68
Query: 267 MAALLE 272
+ ++
Sbjct: 69 IEDTVK 74
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} Length = 86 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Score = 42.7 bits (100), Expect = 8e-06
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 225 DENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENKSNET 278
D F +IG SL +++ +++ T +E+ L+ E
Sbjct: 32 DLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAEA 85
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.8 bits (107), Expect = 2e-05
Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 25/201 (12%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
VL+TG GY+G H + + + + + + RLE +
Sbjct: 4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL------------TKH 51
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYN---ALYKSNVLATK 438
+ + DL + E V Y+ID +IH A + Y +N+L T
Sbjct: 52 HIPFYEVDLC-----DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTV 106
Query: 439 NLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLV 498
L+E + F + S+ ++Y + + + T+ YG +K E ++
Sbjct: 107 VLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPI--PEECPLGPTNPYGHTKYAIENIL 164
Query: 499 L---NAGQMGLPVSIVRCGNI 516
N+ + +I+R N
Sbjct: 165 NDLYNSDKKSWKFAILRYFNP 185
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 12/173 (6%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKLDVT 775
K++ VTG + IG V +L+ G V +++ I ++D+
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLC 61
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
++KV +E ID +++ AG+ + L ++ I + +
Sbjct: 62 DRKGLEKVFKE-----YKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN 116
Query: 836 LPSMLHSRRPGHILNISSNAGVRPF------AGLAVYTGTKYFIEGISGALRQ 882
+ + S + + + P Y TKY IE I L
Sbjct: 117 VSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYN 169
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 45.4 bits (106), Expect = 2e-05
Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 8/132 (6%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
K I V G++ G L++ +G V A + L + LQ P + + +
Sbjct: 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEE--LQAIPNVTLF-QGPLL 59
Query: 776 IENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835
+ ++ + G +N + L + + + +
Sbjct: 60 ---NNVPLMDTLFE--GAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDH 114
Query: 836 LPSMLHSRRPGH 847
P
Sbjct: 115 SLYGPWPAVPMW 126
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} Length = 80 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Score = 41.0 bits (96), Expect = 3e-05
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 199 DESMFQSQKNIAKIWCKILNL--YTLDKDENFFE-IGGHSLTAALCISKMNEELSLNLSI 255
DE++ + I + + D N FE S+ + ++ + ++ +
Sbjct: 2 DEAIKNG---VLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPV 58
Query: 256 KDLFA--HPTVQEMAALLE 272
+ T ++ A +E
Sbjct: 59 SEFDRKEWDTPNKIIAKVE 77
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 44.3 bits (103), Expect = 4e-05
Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 12/199 (6%)
Query: 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYT 380
L+TG+TG G +L +FL+ + +R + N QR+ I + H N
Sbjct: 3 IALITGITGQDGSYLT-EFLLGKGYEVHGLIRRSSNFN-TQRINHIYIDPH-----NVNK 55
Query: 381 DRLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNL 440
+ L +DL+ + ++ + ++ AA + Y ++V+AT L
Sbjct: 56 ALMKLHYADLTDA----SSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGAL 111
Query: 441 IEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN 500
+ + +SE F S Y SK + + +N
Sbjct: 112 RLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVN 171
Query: 501 -AGQMGLPVSIVRCGNIGG 518
GL N
Sbjct: 172 YREAYGLFACNGILFNHES 190
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 40.8 bits (94), Expect = 6e-04
Identities = 18/133 (13%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-----RLENLKTSLQNAPGSII-VK 770
K+ +TG + G L + L+ G +V + RR R+ ++ N +++ +
Sbjct: 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61
Query: 771 KLDVTIENDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLH 830
D+T + +++ + + D + N A + + + + + ++ +
Sbjct: 62 YADLTDASSLRRWIDVI-----KPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEA 116
Query: 831 CIGNILPSMLHSR 843
+ + S +
Sbjct: 117 VRSHTIDSGRTVK 129
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRL 753
+A K I + G++ G + V G +V + R RL
Sbjct: 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL 40
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 41.3 bits (95), Expect = 4e-04
Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 13/137 (9%)
Query: 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN 778
+ +TG +G L ++ G ++ + ++ G+ D+ +N
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKN 62
Query: 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838
DV +++ + D + AG + T +N+ G L N+L +
Sbjct: 63 DVTRLITKY-----MPDSCFHLAGQVAMTTSIDNPCM----DFEINVGGTL----NLLEA 109
Query: 839 MLHSRRPGHILNISSNA 855
+ +I+ S+N
Sbjct: 110 VRQYNSNCNIIYSSTNK 126
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 41.0 bits (94), Expect = 6e-04
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775
K +FVTG + G L L T+GA V + + +L + + A G + + D+
Sbjct: 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADG-MQSEIGDIR 66
Query: 776 IENDV 780
+N +
Sbjct: 67 DQNKL 71
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 39.0 bits (89), Expect = 0.002
Identities = 37/352 (10%), Positives = 103/352 (29%), Gaps = 52/352 (14%)
Query: 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTD 381
VL+ G TGY+G ++ + + R + + + K
Sbjct: 6 VLIVGGTGYIGKRIVNA-SISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ----------L 54
Query: 382 RLILVKSDLSLEMLGLKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLI 441
L+++ L + + + + + + + + A+ ++
Sbjct: 55 GAKLIEASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGN------- 107
Query: 442 EFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA 501
S + P E+ + ++ D +
Sbjct: 108 --------IKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRAIE-------------- 145
Query: 502 GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTK 561
+P + V G + +L L+ +++ ++ D + + D +
Sbjct: 146 -AASIPYTYVSSNMFAG---YFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGT 201
Query: 562 SLVQLTTNVNNANK-IYNFINTNPIHIKTLVSVL-NTYGYNIK--TVPYEKWFHKLNKRE 617
++ + NK +Y N + K ++ + N+ + + + + +
Sbjct: 202 YTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDFLADMKDKS 261
Query: 618 LSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLD 669
E +++ + + N N + + YPE T+ +L+
Sbjct: 262 YEEKIVRCHLYQIFFRGDLYNFEIGPNAIEAT----KLYPEVKYVTMDSYLE 309
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 958 | |||
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 100.0 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 100.0 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 100.0 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 100.0 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 100.0 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 100.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 100.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 100.0 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 100.0 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 100.0 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 100.0 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 100.0 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 100.0 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 100.0 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 100.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 100.0 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 100.0 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 100.0 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 100.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 100.0 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 100.0 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 100.0 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 100.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 100.0 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 100.0 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 100.0 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 100.0 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 100.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 100.0 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 100.0 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 100.0 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 100.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 100.0 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 100.0 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 100.0 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 100.0 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 100.0 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 100.0 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 100.0 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 100.0 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 100.0 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 100.0 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 100.0 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 100.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 100.0 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 100.0 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 100.0 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 100.0 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 100.0 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 100.0 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 100.0 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 100.0 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 100.0 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 100.0 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.98 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.98 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.97 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.97 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.96 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.95 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.95 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.94 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.94 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.94 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.94 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.94 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.94 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.93 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.93 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.92 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.92 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.92 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.92 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.91 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.91 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.91 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.9 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.89 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.88 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.88 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.83 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.81 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.8 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.78 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.77 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.77 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.75 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 99.74 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.73 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.72 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.69 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 99.69 | |
| d2gdwa1 | 76 | Peptidyl carrier protein (PCP), thioester domain { | 99.68 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 99.67 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 99.64 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 99.61 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 99.6 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 99.59 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.5 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.44 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.34 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.29 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.17 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.16 | |
| d2pnga1 | 76 | Type I fatty acid synthase ACP domain {Rat (Rattus | 99.15 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.14 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.13 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.13 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.12 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.12 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.09 | |
| d2jq4a1 | 83 | Hypothetical protein Atu2571 {Agrobacterium tumefa | 99.05 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.04 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.04 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.0 | |
| d1vkua_ | 85 | Acyl carrier protein {Thermotoga maritima [TaxId: | 99.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 98.99 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 98.99 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 98.99 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 98.98 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 98.96 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 98.96 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 98.96 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 98.96 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 98.95 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 98.94 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 98.93 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 98.93 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 98.93 | |
| d1or5a_ | 82 | Frenolicin polyketide synthase acyl carrier protei | 98.92 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 98.91 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 98.9 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 98.89 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 98.89 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 98.89 | |
| d1dv5a_ | 80 | apo-D-alanyl carrier protein {Lactobacillus casei | 98.88 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 98.88 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 98.88 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 98.88 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 98.86 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 98.86 | |
| d2af8a_ | 86 | Actinorhodin polyketide synthase acyl carrier prot | 98.86 | |
| d1klpa_ | 115 | Acyl carrier protein {Mycobacterium tuberculosis [ | 98.85 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 98.85 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 98.84 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 98.83 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 98.83 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 98.82 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 98.82 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 98.82 | |
| d1f80d_ | 74 | Acyl carrier protein {Bacillus subtilis [TaxId: 14 | 98.82 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 98.82 | |
| d1nq4a_ | 95 | Oxytetracycline polyketide synthase acyl carrier { | 98.81 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 98.8 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 98.8 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 98.8 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 98.79 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 98.79 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 98.78 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 98.76 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 98.76 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 98.75 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 98.74 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 98.74 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 98.74 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 98.73 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 98.73 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 98.71 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 98.7 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 98.7 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 98.69 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 98.67 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.67 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 98.67 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 98.67 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 98.66 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 98.66 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 98.65 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 98.65 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 98.64 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 98.63 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 98.6 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 98.58 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 98.58 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 98.55 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 98.53 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 98.49 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 98.49 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 98.48 | |
| d1t8ka_ | 77 | Acyl carrier protein {Escherichia coli [TaxId: 562 | 98.42 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 98.4 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 98.3 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 98.29 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 98.28 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 98.25 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 98.22 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 98.17 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 98.09 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 98.07 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 97.99 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 97.86 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 97.85 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 97.7 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 97.63 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 97.59 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 97.52 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 97.37 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.36 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.34 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.18 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.13 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.07 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.98 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.96 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.95 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.95 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.91 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.85 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.78 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.66 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.62 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.46 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.19 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.14 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.95 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.83 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.81 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.7 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.64 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.52 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.5 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.2 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 95.04 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.98 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.82 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.74 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.67 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.62 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 94.59 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 94.58 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 94.55 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 94.54 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.5 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 94.37 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.35 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 94.31 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.23 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 94.17 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.1 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 93.94 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.93 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.79 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.76 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 93.68 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.67 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.49 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 93.44 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.27 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 93.19 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 93.15 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 93.14 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 93.03 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 92.41 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 92.37 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 92.28 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.8 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 91.79 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 91.74 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 91.5 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 91.49 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 91.43 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 91.38 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 91.21 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 91.15 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 90.95 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 90.9 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 90.89 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 90.75 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 90.48 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 90.02 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 90.0 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 89.83 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 89.81 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 89.56 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 89.27 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.11 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 89.07 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 89.0 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 88.16 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 87.51 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 86.2 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 85.88 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 85.57 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 85.19 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 84.88 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 84.52 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 84.47 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 84.34 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 84.1 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 83.86 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 83.73 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 83.49 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 83.41 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 83.32 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 83.06 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 83.0 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 82.94 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 82.33 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 82.26 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 82.22 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 81.81 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 81.55 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 80.9 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 80.89 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 80.62 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 80.57 |
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=100.00 E-value=4.1e-45 Score=386.68 Aligned_cols=232 Identities=25% Similarity=0.435 Sum_probs=215.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCe-------EEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAK-------VVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~-------Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+++||||||+|||+++|++|+++|++ |++++|+.++++++.+++.+.+.++.+++||++|+++++++++++.+
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE 81 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999998 99999999999999999988888899999999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
+||++|+||||||+....++.+.+.++|+++|++|++|+++++|.++|+|++ +++|+|||+||.++..+.|+.+.|++|
T Consensus 82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~-~~~G~Ii~isS~~~~~~~~~~~~Y~as 160 (240)
T d2bd0a1 82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMER-QHSGHIFFITSVAATKAFRHSSIYCMS 160 (240)
T ss_dssp HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHh-cCCCceEEEechhhcCCCCCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999985 456999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+|+.+|+|+|+.|++++|||||+|+||+|+|+|+....+... .++.+|+|+|+.++|++++++..+++++
T Consensus 161 K~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~~~~~---------~~~~~PedvA~~v~~l~s~~~~~~~~~~ 231 (240)
T d2bd0a1 161 KFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDEMQ---------ALMMMPEDIAAPVVQAYLQPSRTVVEEI 231 (240)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCSTTG---------GGSBCHHHHHHHHHHHHTSCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcCHhhH---------hcCCCHHHHHHHHHHHHcCCccCccCCE
Confidence 9999999999999999999999999999999999865432211 2457899999999999999999999999
Q ss_pred EecCCCCCC
Q psy4557 950 LIEPPLASI 958 (958)
Q Consensus 950 ~i~p~~~~~ 958 (958)
.|.|+...|
T Consensus 232 ~i~p~~G~v 240 (240)
T d2bd0a1 232 ILRPTSGDI 240 (240)
T ss_dssp EEEETTCCC
T ss_pred EEEecCCCC
Confidence 999987653
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=1.9e-45 Score=392.14 Aligned_cols=238 Identities=25% Similarity=0.367 Sum_probs=211.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..|+||++||||||+|||+++|++|+++|++|++++|+.++++++.+++.+.+.++..+++|++++++++++++++.++|
T Consensus 6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|+||+||||||+....++.+.+.++|++++++|+.|+++++|+++|+|+++ ++|+||||||+++..+.++.++|++||+
T Consensus 86 g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~~~~~~~~~~Y~asKa 164 (251)
T d2c07a1 86 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINISSIVGLTGNVGQANYSSSKA 164 (251)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHHCCTTCHHHHHHHH
T ss_pred CCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC-CCeEEEEECCHHhcCCCCCCHHHHHHHH
Confidence 999999999999988889999999999999999999999999999999854 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+.+|+|+||.|++++|||||+|+||+|+|+|.....+ +..+.+ ...+..++.+|+|+|.+++|+++ +.+.+++|..
T Consensus 165 al~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~-~~~~~~~~~~pl~R~~~pedvA~~v~fL~S-~~s~~itG~~ 242 (251)
T d2c07a1 165 GVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISE-QIKKNIISNIPAGRMGTPEEVANLACFLSS-DKSGYINGRV 242 (251)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCH-HHHHHHHTTCTTSSCBCHHHHHHHHHHHHS-GGGTTCCSCE
T ss_pred HHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCH-HHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-chhCCCcCcE
Confidence 99999999999999999999999999999999865432 222222 22234568899999999999664 6678999877
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
|.
T Consensus 243 i~ 244 (251)
T d2c07a1 243 FV 244 (251)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=100.00 E-value=4.7e-45 Score=389.06 Aligned_cols=240 Identities=23% Similarity=0.295 Sum_probs=214.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
+|+|+||++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++.. ++++.++++|++++++++++++++.++
T Consensus 1 snrL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 1 SNRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999988854 457889999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
||+||+||||||+....++.+++.++|+++|++|+.|+++++|+++|+|++++.+|+|||+||+++..+.|+.+.|++||
T Consensus 80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~~~~~Y~asK 159 (251)
T d1zk4a1 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASK 159 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred hCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccCCCchhHHHHH
Confidence 99999999999999889999999999999999999999999999999998665567999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcccc
Q psy4557 871 YFIEGISGALRQE--VSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVN 947 (958)
Q Consensus 871 aa~~~l~~~la~e--l~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~ 947 (958)
+|+.+|+|+||.| ++++|||||+|+||+|+|+|.......+...... ..+..++.+|+|+|..++|++ ++.+.+++
T Consensus 160 aal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~-S~~s~~it 238 (251)
T d1zk4a1 160 GAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYLA-SNESKFAT 238 (251)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTTTCTTSSCBCHHHHHHHHHHHH-SGGGTTCC
T ss_pred HHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCHHHHHHHHhCCCCCCCcCHHHHHHHHHHHh-CchhCCCc
Confidence 9999999999998 6799999999999999999976654433322221 223346789999999999965 47778999
Q ss_pred ceEec
Q psy4557 948 SILIE 952 (958)
Q Consensus 948 ~~~i~ 952 (958)
|..|.
T Consensus 239 G~~i~ 243 (251)
T d1zk4a1 239 GSEFV 243 (251)
T ss_dssp SCEEE
T ss_pred CcEEE
Confidence 87764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-45 Score=389.88 Aligned_cols=238 Identities=22% Similarity=0.337 Sum_probs=214.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.++++.++++|++++++++++++++.++|
T Consensus 7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|+||+||||||+....++ +.+.++|++++++|+.|+++++|.++|+|.++ ++|+|||+||.++..+.+++++|++||+
T Consensus 87 g~iDilvnnAG~~~~~~~-e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~Ii~isS~~~~~~~~~~~~Y~asKa 164 (255)
T d1fmca_ 87 GKVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKN-GGGVILTITSMAAENKNINMTSYASSKA 164 (255)
T ss_dssp SSCCEEEECCCCCCCCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTCCCTTCHHHHHHHH
T ss_pred CCCCEeeeCCcCCCCCcc-cCCHHHHHHHHHHHHHHhhhhHHHHHhhhccc-cccccccccccchhccccccccchhHHH
Confidence 999999999999876665 78999999999999999999999999999854 4689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+.+|+|+||.|++++|||||+|+||+|+|+|......++..+.+. ..+..++.+|+|+|.+++|++ ++.+.+++|..
T Consensus 165 al~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~pl~R~g~pedvA~~v~fL~-S~~s~~itG~~ 243 (255)
T d1fmca_ 165 AASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLC-SPAASWVSGQI 243 (255)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHHHHHHHHHHH-SGGGTTCCSCE
T ss_pred HHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-CchhcCCcCCE
Confidence 9999999999999999999999999999999876554444433332 223456789999999999965 57788999877
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
|.
T Consensus 244 i~ 245 (255)
T d1fmca_ 244 LT 245 (255)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=100.00 E-value=6.9e-45 Score=386.84 Aligned_cols=237 Identities=21% Similarity=0.331 Sum_probs=199.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+|+||++||||||+|||+++|+.|+++|++|++++|+.+. +..+.+++.++++..+++|++++++++++++++.++|
T Consensus 1 qrL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 1 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF 78 (247)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999999999999999998753 3334555667789999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|+||+||||||+....++.+++.++|+++|++|+.|+++++|+++|+|+++ +.|+|||+||.++..+.|+.+.|++||+
T Consensus 79 G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Iv~isS~~~~~~~~~~~~Y~asKa 157 (247)
T d2ew8a1 79 GRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN-GWGRIINLTSTTYWLKIEAYTHYISTKA 157 (247)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGGSCCSSCHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhc-CCCCccccccchhcccCcccccchhhhc
Confidence 999999999999988899999999999999999999999999999999854 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc--cccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD--ISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~--~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+.+|+|+||.|++++|||||+|+||+|+|+|..........+... .....++.+|+|+|..++|++ ++.+.+++|.
T Consensus 158 al~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~l~r~~~pedvA~~v~fL~-S~~s~~itG~ 236 (247)
T d2ew8a1 158 ANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAAAFLA-SDDASFITGQ 236 (247)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECCC------------------CTTSSSCSCCCTHHHHHHHHHHT-SGGGTTCCSC
T ss_pred cHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccchhHHHHHHHhccCCCCCCHHHHHHHHHHHh-CchhcCCcCC
Confidence 9999999999999999999999999999999976543222221111 112346789999999999965 4677899988
Q ss_pred Eec
Q psy4557 950 LIE 952 (958)
Q Consensus 950 ~i~ 952 (958)
.|.
T Consensus 237 ~i~ 239 (247)
T d2ew8a1 237 TLA 239 (247)
T ss_dssp EEE
T ss_pred eEE
Confidence 764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-45 Score=389.14 Aligned_cols=235 Identities=28% Similarity=0.407 Sum_probs=210.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+|+||++||||||+|||+++|+.|+++|++|++++|+.++++++.+++. .+...+++|++++++++++++++.++||
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG---ANGKGLMLNVTDPASIESVLEKIRAEFG 77 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC---CCCcEEEEEecCHHHhhhhhhhhhcccC
Confidence 4899999999999999999999999999999999999999999998874 3577889999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+||+||||||.....++.+.+.++|++++++|+.|+++++|+++|+|+++ ++|+|||+||.++..+.++.++|++||+|
T Consensus 78 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~~~~~~~~~~Y~asKaa 156 (243)
T d1q7ba_ 78 EVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK-RHGRIITIGSVVGTMGNGGQANYAAAKAG 156 (243)
T ss_dssp SCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHHCCTTCHHHHHHHHH
T ss_pred CcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc-CCCEeeeecchhhcCCCCCCHHHHHHHHH
Confidence 99999999999988999999999999999999999999999999999854 46999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+.+|+|+||.|++++|||||+|+||+|+|+|.....++.........+..++.+|+|+|..++|+++ +.+.+++|..|.
T Consensus 157 l~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S-~~s~~itGq~i~ 235 (243)
T d1q7ba_ 157 LIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANAVAFLAS-DEAAYITGETLH 235 (243)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHS-GGGTTCCSCEEE
T ss_pred HHHHHHHHHHHhCccCeEEEEEecceEechhhhhhhhhHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-chhcCCcCCeEE
Confidence 9999999999999999999999999999999765433222111122234567899999999999765 777889987764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=100.00 E-value=5.8e-45 Score=388.09 Aligned_cols=236 Identities=27% Similarity=0.386 Sum_probs=207.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
|+|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++ ++++.++++|++++++++++++++.++|
T Consensus 1 ndL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence 5799999999999999999999999999999999999999888877665 4578899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|+||+||||||+....++.+.+.++|++++++|+.|+++++|.++|+|+++ +.|+|||+||.++..+.++.++|++||+
T Consensus 78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-~~G~II~isS~~~~~~~~~~~~Y~asKa 156 (254)
T d1hdca_ 78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAAGLMGLALTSSYGASKW 156 (254)
T ss_dssp SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred CCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc-CCCeecccccchhcccccchhhHHHHHH
Confidence 999999999999988899999999999999999999999999999999854 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCC-CHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVL-TTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+.+|+|+||.|++++|||||+|+||+|+|+|................+..++. +|+|+|.+++|++ ++.+.+++|..
T Consensus 157 al~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~g~~PedvA~~v~fL~-S~~a~~itG~~ 235 (254)
T d1hdca_ 157 GVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLL-SDTSSYVTGAE 235 (254)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHTCCCSTTSCTTSTTSSCB-CHHHHHHHHHHHH-SGGGTTCCSCE
T ss_pred HHHHHHHHHHHHhCCCceEEEEeeeCcccCccchhcCHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHh-chhhCCCCCce
Confidence 999999999999999999999999999999986543222111111111223444 6999999999976 47778888876
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
|.
T Consensus 236 i~ 237 (254)
T d1hdca_ 236 LA 237 (254)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2e-44 Score=381.52 Aligned_cols=231 Identities=27% Similarity=0.389 Sum_probs=208.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++. .++.++++|++++++++++++++.+++
T Consensus 2 G~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 2 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999888874 467889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+++.++|+++|++|+.|+++++|.++|+|+++ +.|+|||+||.++..+.++.+.|++||+
T Consensus 79 g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~~~~~~~~Y~asKa 157 (244)
T d1nffa_ 79 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEGLAGTVACHGYTATKF 157 (244)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred CCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEeccccccccccccccchhhHHH
Confidence 999999999999988999999999999999999999999999999999854 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
|+.+|+|+||.|++++|||||+|+||+|+|+|....... ....+..++.+|+|+|.+++|+++ +.+.+++|..|
T Consensus 158 al~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~-----~~~~pl~R~~~p~diA~~v~fL~s-~~s~~itG~~i 231 (244)
T d1nffa_ 158 AVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPED-----IFQTALGRAAEPVEVSNLVVYLAS-DESSYSTGAEF 231 (244)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSCTT-----CSCCSSSSCBCHHHHHHHHHHHHS-GGGTTCCSCEE
T ss_pred HHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhhHH-----HHhccccCCCCHHHHHHHHHHHhC-hhhCCCcCCEE
Confidence 999999999999999999999999999999997543221 111233467899999999999765 77788988765
Q ss_pred c
Q psy4557 952 E 952 (958)
Q Consensus 952 ~ 952 (958)
.
T Consensus 232 ~ 232 (244)
T d1nffa_ 232 V 232 (244)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=1.5e-44 Score=387.09 Aligned_cols=240 Identities=25% Similarity=0.371 Sum_probs=213.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh-hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~-~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
++|+||++|||||++|||+++|++|+++|++|++++|+. +.++++.+++.+.+.++..+++|++++++++++++++.++
T Consensus 3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999985 5788889999888889999999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
||+||+||||||+....++.+++.++|++++++|+.|+++++|.++|+|++++.+++|||+||.++..+.|+..+|++||
T Consensus 83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~~~~Y~asK 162 (261)
T d1geea_ 83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASK 162 (261)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCccccccccCC
Confidence 99999999999999888999999999999999999999999999999998776667899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+|+.+|+|+||.|++++|||||+|+||+|+|+|..... +++....+. ..+..++.+|+|+|.+++|++ ++.+.+++|
T Consensus 163 aal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~fL~-S~~s~~itG 241 (261)
T d1geea_ 163 GGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLA-SSEASYVTG 241 (261)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBCHHHHHHHHHHHH-SGGGTTCCS
T ss_pred ccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-CchhcCCcC
Confidence 99999999999999999999999999999999865321 222222222 223456789999999999966 577788888
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..|.
T Consensus 242 ~~i~ 245 (261)
T d1geea_ 242 ITLF 245 (261)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 7663
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=7.7e-45 Score=385.53 Aligned_cols=234 Identities=28% Similarity=0.421 Sum_probs=211.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEE-ecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAV-ARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~-~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+++|||||++|||+++|++|+++|++|++. .|+.+.++++.+++.+.+.++.++++|++++++++++++++.++||+||
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 81 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID 81 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 699999999999999999999999999987 5677889999999988888899999999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEG 875 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~ 875 (958)
+||||||+....++.+.+.++|++++++|+.|+++++|+++|+|+++ ++|+|||+||.++..+.++.+.|++||+|+.+
T Consensus 82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~ 160 (244)
T d1edoa_ 82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVGLIGNIGQANYAAAKAGVIG 160 (244)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHHCCTTCHHHHHHHHHHHH
T ss_pred ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcChhhcCCCCCCHHHHHHHHHHHH
Confidence 99999999988999999999999999999999999999999999854 56999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 876 ISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 876 l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
|+|+|+.|++++|||||+|+||+|+|+|.....+ +..+.. ...+..++.+|+|+|..++|++.+|.+.+++|..|.
T Consensus 161 ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~-~~~~~~~~~~pl~R~~~p~dvA~~v~fLa~S~~a~~itG~~i~ 237 (244)
T d1edoa_ 161 FSKTAAREGASRNINVNVVCPGFIASDMTAKLGE-DMEKKILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAFT 237 (244)
T ss_dssp HHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCH-HHHHHHHTSCTTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEE
T ss_pred ChHHHHHHHhhhCcEEEEEecceeccHHHHHhhH-HHHHHHHhcCCCCCCcCHHHHHHHHHHHHCCchhcCCcCCeEE
Confidence 9999999999999999999999999999765432 222222 223345788999999999997678999999997763
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=5e-44 Score=382.41 Aligned_cols=235 Identities=24% Similarity=0.331 Sum_probs=210.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.++++.+++||++++++++++++++.++||+||+
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 78999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHH
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l 876 (958)
||||||+....++.+++.++|++++++|+.|+++++|+++|+|.+++..|+||++||.++..+.|+.+.|++||+|+.+|
T Consensus 82 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~l 161 (255)
T d1gega_ 82 IVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGL 161 (255)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHH
T ss_pred EEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCcccccchhCHHHHHhh
Confidence 99999999888999999999999999999999999999999988776779999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC----------hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD----------RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 877 ~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~----------~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
+|+||.|++++|||||+|+||+|+|+|+..... ......+ ...+..++.+|+|+|..++|+++ +.+.+
T Consensus 162 tk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~peevA~~v~fL~S-~~a~~ 240 (255)
T d1gega_ 162 TQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLAS-PDSDY 240 (255)
T ss_dssp HHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHS-GGGTT
T ss_pred HHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-chhCC
Confidence 999999999999999999999999998643211 1111111 11234568899999999999765 77889
Q ss_pred ccceEec
Q psy4557 946 VNSILIE 952 (958)
Q Consensus 946 i~~~~i~ 952 (958)
++|..|.
T Consensus 241 itG~~i~ 247 (255)
T d1gega_ 241 MTGQSLL 247 (255)
T ss_dssp CCSCEEE
T ss_pred ccCcEEE
Confidence 9987764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=100.00 E-value=2.6e-44 Score=384.64 Aligned_cols=238 Identities=23% Similarity=0.390 Sum_probs=208.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+. +.++..++||++|+++++++++++.++
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988887543 457889999999999999999999999
Q ss_pred cCCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 791 LGHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 791 ~g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
||+||+||||||+.. ..++.+++.++|+++|++|+.|+++++|+++|+|++ +++|+|||+||.++..+.|+.+.|++|
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~-~~~G~Ii~isS~~~~~~~~~~~~Y~as 159 (258)
T d1iy8a_ 81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMRE-QGSGMVVNTASVGGIRGIGNQSGYAAA 159 (258)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCCEEEEECCGGGTSBCSSBHHHHHH
T ss_pred hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhh-hcCCCCcccccHhhccCCCCchHHHHH
Confidence 999999999999864 567889999999999999999999999999999985 457999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-------Chhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-------DRDVVDKY-DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-------~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
|+|+.+|+|+||.|++++|||||+|+||+|+|+|..... .....+.+ ...+..++.+|+|+|..++|++ ++
T Consensus 160 Kaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~p~dvA~~v~fL~-S~ 238 (258)
T d1iy8a_ 160 KHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLL-SD 238 (258)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHT-SG
T ss_pred HHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-Cc
Confidence 999999999999999999999999999999999864311 01111111 1123456789999999999965 47
Q ss_pred CCccccceEec
Q psy4557 942 SHSAVNSILIE 952 (958)
Q Consensus 942 ~~~~i~~~~i~ 952 (958)
.+.+++|..|.
T Consensus 239 ~s~~itG~~i~ 249 (258)
T d1iy8a_ 239 DASYVNATVVP 249 (258)
T ss_dssp GGTTCCSCEEE
T ss_pred hhcCCcCceEE
Confidence 78899987664
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.1e-44 Score=385.60 Aligned_cols=238 Identities=22% Similarity=0.288 Sum_probs=187.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL- 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~- 791 (958)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+.+.++..+.||++++++++++++++.++|
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999999999999999999999998888889999999999999999999999998
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+....++.+++.++|++++++|+.|+++++|.++|+|++ ++.|+|||+||.++..+.++...|++||+
T Consensus 85 g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~-~~~G~Iv~isS~~~~~~~~~~~~Y~asKa 163 (259)
T d1xq1a_ 85 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKA-SGCGNIIFMSSIAGVVSASVGSIYSATKG 163 (259)
T ss_dssp TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSSCEEEEEC----------CCHHHHHHH
T ss_pred CCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccc-ccccccccccccccccccccccccccccc
Confidence 78999999999998889999999999999999999999999999999985 45699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+.+|+|+||.|++++|||||+|+||+|+|+|......++..+... ..+..++.+|+|+|.+++|++ ++.+.+++|..
T Consensus 164 al~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~-S~~s~~iTG~~ 242 (259)
T d1xq1a_ 164 ALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAFLC-MPAASYITGQT 242 (259)
T ss_dssp HHHHHHHHHHHHHGGGTCEEEEEECCSCC-------------------------CCGGGGHHHHHHHT-SGGGTTCCSCE
T ss_pred chhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchHHHHHHHHhCCCCCCCcCHHHHHHHHHHHh-CchhcCCcCcE
Confidence 9999999999999999999999999999999976543333222221 223346789999999999965 57788999877
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
|.
T Consensus 243 i~ 244 (259)
T d1xq1a_ 243 IC 244 (259)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.9e-44 Score=381.76 Aligned_cols=238 Identities=22% Similarity=0.297 Sum_probs=209.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++..+++|++++++++++++++.++|
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999998887743 46678899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccC-cCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAG-VRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g-~~~~~~~~~Y~asK 870 (958)
|+||+||||||+....++.+++.++|++++++|+.|+++++|.++|+|+ +++.|+||+++|..+ ..+.++.+.|++||
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~-~~~~G~Ii~i~S~~~~~~~~~~~~~Y~asK 160 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLR-ESDNPSIINIGSLTVEEVTMPNISAYAASK 160 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCSSCEEEEECCGGGTCCCSSSCHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccc-ccccccccccccchhccccCccccchHHHH
Confidence 9999999999998888999999999999999999999999999999997 445799999999876 45788899999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-CChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-TDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+|+.+|+|+|+.|++++|||||+|+||+|+|+|.... .+++..+.+. ..+..++.+|+|+|..++|+++ +.+.+++|
T Consensus 161 aal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S-~~a~~itG 239 (251)
T d1vl8a_ 161 GGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLAS-EEAKYVTG 239 (251)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHS-GGGTTCCS
T ss_pred HhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-chhCCCcC
Confidence 9999999999999999999999999999999997542 1222222222 2234568899999999999664 77789998
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..|.
T Consensus 240 ~~i~ 243 (251)
T d1vl8a_ 240 QIIF 243 (251)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 8764
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=100.00 E-value=3.4e-44 Score=384.23 Aligned_cols=238 Identities=25% Similarity=0.371 Sum_probs=212.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+|+||++||||||+|||+++|++|+++|++|++++|+.++++++.+++.+.+.++.++++|++++++++++++++.++++
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999988888899999999999999999999999987
Q ss_pred -CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 793 -HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 793 -~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
++|+||||||+....++.+.+.++|++++++|+.|+++++|.++|+|.++ ++|+|||+||.++..+.|+.+.|++||+
T Consensus 85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~~~~~~~~Y~asKa 163 (259)
T d2ae2a_ 85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISSVSGALAVPYEAVYGATKG 163 (259)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-cccccccccccccccccccccchHHHHH
Confidence 79999999999988899999999999999999999999999999999854 5699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhh---hhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDV---VDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~---~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
|+.+|+|+||.|++++|||||+|+||+|+|+|..... ++.. .+.. ...+..++.+|+|+|..++|++ ++.+.++
T Consensus 164 al~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~pedvA~~v~fL~-S~~s~~i 242 (259)
T d2ae2a_ 164 AMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLC-FPAASYV 242 (259)
T ss_dssp HHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCSCBCHHHHHHHHHHHH-SGGGTTC
T ss_pred HHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-CchhCCC
Confidence 9999999999999999999999999999999865322 1111 1111 1223457889999999999966 4777899
Q ss_pred cceEec
Q psy4557 947 NSILIE 952 (958)
Q Consensus 947 ~~~~i~ 952 (958)
+|..|.
T Consensus 243 tG~~i~ 248 (259)
T d2ae2a_ 243 TGQIIY 248 (259)
T ss_dssp CSCEEE
T ss_pred cCcEEE
Confidence 987763
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=3.1e-44 Score=384.59 Aligned_cols=236 Identities=25% Similarity=0.351 Sum_probs=209.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+.++..+++|++++++++++++++.++||+||
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 81 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD 81 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHH-hCCCCcEEEEecCccCcCCCCCChhhhHHHHHHH
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSML-HSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIE 874 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~-~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~ 874 (958)
+||||||+....++.+++.++|++++++|+.|+++++|+++|+|. ..++.|+||+++|.++..+.|+.+.|++||+|+.
T Consensus 82 ilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~~~~Y~asKaal~ 161 (257)
T d2rhca1 82 VLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVV 161 (257)
T ss_dssp EEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTTCHHHHHHHHHHH
T ss_pred EEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccccchhHHHHHHHHH
Confidence 999999999888999999999999999999999999999999742 2345689999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----------CChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 875 GISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----------TDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 875 ~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----------~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+|+|+||.|++++|||||+|+||+|+|+|.... ..++..+.+. ..+..++.+|+|+|..++|++ ++.+
T Consensus 162 ~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~PlgR~~~pedia~~v~fL~-S~~s 240 (257)
T d2rhca1 162 GFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLI-GPGA 240 (257)
T ss_dssp HHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHT-SGGG
T ss_pred HHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-Cchh
Confidence 999999999999999999999999999986431 1111112221 123456889999999999965 5777
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..|.
T Consensus 241 ~~itG~~i~ 249 (257)
T d2rhca1 241 AAVTAQALN 249 (257)
T ss_dssp TTCCSCEEE
T ss_pred cCCcCceEE
Confidence 899987663
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=5.1e-44 Score=383.59 Aligned_cols=238 Identities=25% Similarity=0.412 Sum_probs=203.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.|+||++||||||+|||+++|++|+++|++|++++|+ .+.++++.+++.+ .+.++.++++|++++++++++++++.++
T Consensus 1 ~L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999997 5678888877754 3567889999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
||+||+||||||+....++.+.+.++|+++|++|+.|+++++|+++|+|+++ +.|+|||+||.++..+.|+.++|++||
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Iv~isS~~~~~~~~~~~~Y~asK 159 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ-GFGRIINIASAHGLVASANKSAYVAAK 159 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhc-CCceEeecccccceeccCCcchhhhhh
Confidence 9999999999999988999999999999999999999999999999999854 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh----------h-hhh-ccccCCCCCCHHHHHHHHHHHh
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV----------V-DKY-DISKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~----------~-~~~-~~~~~~~~~~p~~ia~~i~~~l 938 (958)
+|+.+|+|+||.|++++|||||+|+||+|+|+|......... . +.+ ...+..++.+|+|+|..++|++
T Consensus 160 aal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~ 239 (260)
T d1x1ta1 160 HGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLA 239 (260)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTCCCBCHHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999764321100 0 001 1123456889999999999966
Q ss_pred cCCCCccccceEec
Q psy4557 939 LQPSHSAVNSILIE 952 (958)
Q Consensus 939 ~~~~~~~i~~~~i~ 952 (958)
+ +.+.+++|..|.
T Consensus 240 S-~~a~~itG~~i~ 252 (260)
T d1x1ta1 240 S-DAAAQITGTTVS 252 (260)
T ss_dssp S-GGGTTCCSCEEE
T ss_pred C-hhhCCCcCCEEE
Confidence 4 777889987663
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=1.1e-43 Score=379.68 Aligned_cols=236 Identities=23% Similarity=0.338 Sum_probs=209.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++ +.++..+++|++++++++++++++.++||
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 78 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---GPAACAIALDVTDQASIDRCVAELLDRWG 78 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---CCceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 489999999999999999999999999999999999999999988877 45788999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+||+||||||+....++.+++.++|++++++|+.|+++++|.++|.|.+++++|+|||+||.++..+.++.+.|++||+|
T Consensus 79 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa 158 (256)
T d1k2wa_ 79 SIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAA 158 (256)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred CccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccccccchhhhhhH
Confidence 99999999999988899999999999999999999999999999988766667999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----------Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----------DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----------~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
+.+|+|+||.|++++|||||+|+||+|+|+|+.... ..+..+... ..+..++.+|+|+|..++|+ +++
T Consensus 159 l~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~p~evA~~v~fL-~S~ 237 (256)
T d1k2wa_ 159 VISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIFL-ATP 237 (256)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCHHHHHHHHHHT-TSG
T ss_pred HHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHH-hCc
Confidence 999999999999999999999999999999864211 111111111 12345688999999999995 557
Q ss_pred CCccccceEec
Q psy4557 942 SHSAVNSILIE 952 (958)
Q Consensus 942 ~~~~i~~~~i~ 952 (958)
.+.+++|..|.
T Consensus 238 ~a~~iTG~~i~ 248 (256)
T d1k2wa_ 238 EADYIVAQTYN 248 (256)
T ss_dssp GGTTCCSCEEE
T ss_pred hhCCccCceEE
Confidence 78899988764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=100.00 E-value=2.8e-44 Score=385.32 Aligned_cols=239 Identities=24% Similarity=0.339 Sum_probs=211.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+.+.++..++||++++++++++++++.++|
T Consensus 1 krL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred CCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|++ ++.|+|||+||.++..+.|+++.|++||
T Consensus 81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~-~~~G~II~isS~~~~~~~~~~~~Y~asK 159 (260)
T d1zema1 81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMIT-QNYGRIVNTASMAGVKGPPNMAAYGTSK 159 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEECCHHHHSCCTTBHHHHHHH
T ss_pred CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhh-hcCCCCCeeechhhccCCcchHHHHHHH
Confidence 99999999999874 467999999999999999999999999999999985 4569999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC--------------CChhh-hhhh-ccccCCCCCCHHHHHHHH
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS--------------TDRDV-VDKY-DISKAVPVLTTKEISQSI 934 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~--------------~~~~~-~~~~-~~~~~~~~~~p~~ia~~i 934 (958)
+|+.+|+|+||.|++++|||||+|+||+|+|+|.... ..++. .+.+ ...+..++.+|+|+|..+
T Consensus 160 aal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v 239 (260)
T d1zema1 160 GAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVV 239 (260)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHH
T ss_pred HHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence 9999999999999999999999999999999974211 11111 1111 122345678999999999
Q ss_pred HHHhcCCCCccccceEec
Q psy4557 935 IFALLQPSHSAVNSILIE 952 (958)
Q Consensus 935 ~~~l~~~~~~~i~~~~i~ 952 (958)
+|+++ +.+.+++|..|.
T Consensus 240 ~fL~S-~~s~~itG~~i~ 256 (260)
T d1zema1 240 AFLLG-DDSSFMTGVNLP 256 (260)
T ss_dssp HHHHS-GGGTTCCSCEEE
T ss_pred HHHhC-chhcCccCCeEE
Confidence 99665 777899988763
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.6e-43 Score=373.19 Aligned_cols=232 Identities=22% Similarity=0.297 Sum_probs=203.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++. ...++||++++++++++++++.++||
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~g 76 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG-----AHPVVMDVADPASVERGFAEALAHLG 76 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTT-----CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----CeEEEEecCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999988876652 45788999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+||+||||||+....++.+++.++|++++++|+.|+++++|+++|+|. +++.|+|+++||. +..+.++.++|++||+|
T Consensus 77 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~-~~~~~~i~~~ss~-~~~~~~~~~~Y~asKaa 154 (242)
T d1ulsa_ 77 RLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMR-EKNPGSIVLTASR-VYLGNLGQANYAASMAG 154 (242)
T ss_dssp SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCCEEEEEECCG-GGGCCTTCHHHHHHHHH
T ss_pred CceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccc-ccccceeeeeccc-cccCCCCCcchHHHHHH
Confidence 999999999999888999999999999999999999999999999997 4456778777774 67789999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+.+|+|+||.|++++|||||+|+||+|+|+|.....+..........+..++.+|+|+|..++|+++ +.+.+++|..|.
T Consensus 155 l~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S-~~s~~itG~~i~ 233 (242)
T d1ulsa_ 155 VVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPLEVAYAALFLLS-DESSFITGQVLF 233 (242)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHS-GGGTTCCSCEEE
T ss_pred HHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-hhhCCCCCcEEE
Confidence 9999999999999999999999999999999865432222111222344578899999999999665 677889988764
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.3e-43 Score=374.91 Aligned_cols=232 Identities=22% Similarity=0.327 Sum_probs=200.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+|+||++|||||++|||+++|+.|+++|++|++++|+.+..+ +.+++. ..++++|++++++++++++++.++||
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~G 75 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAIG-----GAFFQVDLEDERERVRFVEEAAYALG 75 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-HHHHHT-----CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHcC-----CeEEEEeCCCHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999987654 344432 34678999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+||+||||||+....++.+++.++|++++++|+.|+++++|+++|+|++ +++|+|||+||.++..+.++.+.|++||+|
T Consensus 76 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~-~~~G~Ii~isS~~~~~~~~~~~~Y~asKaa 154 (248)
T d2d1ya1 76 RVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRK-VGGGAIVNVASVQGLFAEQENAAYNASKGG 154 (248)
T ss_dssp CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-TTCEEEEEECCGGGTSBCTTBHHHHHHHHH
T ss_pred CCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccc-cccccccccccccccccccccchhHHHHHH
Confidence 9999999999998899999999999999999999999999999999984 457999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----CCh-hhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----TDR-DVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~~~-~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
+.+|+|+||.|++++|||||+|+||+|+|+|.... .++ ...+.+. ..+..++.+|+|+|..++|+++ +.+.++
T Consensus 155 l~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S-~~s~~i 233 (248)
T d2d1ya1 155 LVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLAS-EKASFI 233 (248)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSSCBCHHHHHHHHHHHHS-GGGTTC
T ss_pred HHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-chhcCC
Confidence 99999999999999999999999999999985421 111 1111111 2233467899999999999765 777899
Q ss_pred cceEec
Q psy4557 947 NSILIE 952 (958)
Q Consensus 947 ~~~~i~ 952 (958)
+|..|.
T Consensus 234 tG~~i~ 239 (248)
T d2d1ya1 234 TGAILP 239 (248)
T ss_dssp CSCEEE
T ss_pred CCcEEE
Confidence 987664
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-43 Score=375.05 Aligned_cols=233 Identities=26% Similarity=0.353 Sum_probs=204.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++|+||++||||||+|||+++|+.|+++|++|++++|+.++++++.+++. ++.+++||++++++++++++++.++|
T Consensus 2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~----~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP----GAVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC----CCeEEEccCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999998887763 47789999999999999999999999
Q ss_pred CCccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|++ ++|+|||+||.++..+.++.+.|++||
T Consensus 78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~--~~G~Ii~isS~~~~~~~~~~~~Y~asK 155 (250)
T d1ydea1 78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRK--SQGNVINISSLVGAIGQAQAVPYVATK 155 (250)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HTCEEEEECCHHHHHCCTTCHHHHHHH
T ss_pred CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHh--CCCCCcccccccccccccCcchhHHHH
Confidence 99999999999764 456889999999999999999999999999999974 348999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----CCh-hhhhh-hccccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----TDR-DVVDK-YDISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~~~-~~~~~-~~~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
+|+.+|+|+||.|++++|||||+|+||+|+|+|+... .+. ...+. ....+..++.+|+|+|.+++|+++ + +.
T Consensus 156 aal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~p~eva~~v~fL~S-d-a~ 233 (250)
T d1ydea1 156 GAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVFLAS-E-AN 233 (250)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHH-H-CT
T ss_pred hhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC-c-cC
Confidence 9999999999999999999999999999999986431 111 11111 112234578899999999999876 4 56
Q ss_pred cccceEec
Q psy4557 945 AVNSILIE 952 (958)
Q Consensus 945 ~i~~~~i~ 952 (958)
+++|..|.
T Consensus 234 ~itG~~i~ 241 (250)
T d1ydea1 234 FCTGIELL 241 (250)
T ss_dssp TCCSCEEE
T ss_pred CCcCCeEE
Confidence 89987663
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=100.00 E-value=1.1e-42 Score=374.87 Aligned_cols=238 Identities=24% Similarity=0.369 Sum_probs=207.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
|+|+||++||||||+|||+++|++|+++|++|++++|+.++++++.+++... +.+.++.||++++++++++++++.++|
T Consensus 2 nrL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 2 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP-DVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC-CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999999999999999999999998654 457788999999999999999999999
Q ss_pred CCccEEEEccccCCCc--cccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC-hhhhH
Q psy4557 792 GHIDILVNNAGVMYFT--LMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL-AVYTG 868 (958)
Q Consensus 792 g~iDilInnAG~~~~~--~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~-~~Y~a 868 (958)
|++|+||||||+.... .+.+.+.++|++++++|+.|+++++|.++|+|++ ++.|+||++||.++..+.++. ..|++
T Consensus 81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~-~~~g~ii~iss~~~~~~~~~~~~~Y~a 159 (268)
T d2bgka1 81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIP-AKKGSIVFTASISSFTAGEGVSHVYTA 159 (268)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGG-GTCEEEEEECCGGGTCCCTTSCHHHHH
T ss_pred CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhh-cCCCCccccccccccccccccccccch
Confidence 9999999999987543 4778999999999999999999999999999984 456999999999999876664 58999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh--hhhhhhc---cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR--DVVDKYD---ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~--~~~~~~~---~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
||+|+.+|+|+||.||+++|||||+|+||+|+|+|....... ...+... .....++.+|||+|.+++|+++ +.+
T Consensus 160 sKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~pedvA~~v~fL~S-~~s 238 (268)
T d2bgka1 160 TKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAYLAG-DES 238 (268)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHS-GGG
T ss_pred hHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccccCCCCcCHHHHHHHHHHHhC-hhh
Confidence 999999999999999999999999999999999997654321 1111111 1233468899999999999764 677
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..|.
T Consensus 239 ~~itGq~i~ 247 (268)
T d2bgka1 239 KYVSGLNLV 247 (268)
T ss_dssp TTCCSCEEE
T ss_pred CCccCceEE
Confidence 889987663
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=2.4e-43 Score=376.00 Aligned_cols=236 Identities=25% Similarity=0.356 Sum_probs=206.4
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.|+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++. .+..++++|++++++++++++++.++
T Consensus 1 tnrL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 1 TNRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG---ERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC---TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999988873 56788999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
||++|+||||||+....++.+.+.++|++++++|+.|+++++|.++|+|+ + ++|+||||||.++..+.++.++|++||
T Consensus 78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~-~-~~G~Iv~isS~~~~~~~~~~~~Y~asK 155 (253)
T d1hxha_ 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMK-E-TGGSIINMASVSSWLPIEQYAGYSASK 155 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-T-TCEEEEEECCGGGTSCCTTBHHHHHHH
T ss_pred hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHH-h-cCCceecccchhhhcCccccccccchh
Confidence 99999999999999888899999999999999999999999999999996 3 359999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC--CcEEEEEECCcccCCCCCCCCC----hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 871 YFIEGISGALRQEVSDR--NIKVTCIQAGDVKTELLSHSTD----RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 871 aa~~~l~~~la~el~~~--gIrv~~v~PG~v~T~~~~~~~~----~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+|+.+|+|+||.|++++ |||||+|+||+|+|+|...... ++..... ......++.+|+|+|.+++|++ ++.+
T Consensus 156 aal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~pedvA~~v~fL~-S~~s 234 (253)
T d1hxha_ 156 AAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFLA-SDES 234 (253)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBTTTBTTCCEECHHHHHHHHHHHH-SGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchhhHHHHHhCccccccCCCCCHHHHHHHHHHHh-Chhh
Confidence 99999999999999874 5999999999999998643211 1111111 1112335779999999999966 4777
Q ss_pred ccccceEec
Q psy4557 944 SAVNSILIE 952 (958)
Q Consensus 944 ~~i~~~~i~ 952 (958)
.+++|..|.
T Consensus 235 ~~itG~~i~ 243 (253)
T d1hxha_ 235 SVMSGSELH 243 (253)
T ss_dssp TTCCSCEEE
T ss_pred CCCcCcEEE
Confidence 889988763
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3.4e-43 Score=370.95 Aligned_cols=227 Identities=22% Similarity=0.333 Sum_probs=191.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+|+||++||||||+|||+++|++|+++|++|++++|+.+.+ .++..+++|++++++++++++++.++|
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-----------~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 71 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP-----------KGLFGVEVDVTDSDAVDRAFTAVEEHQ 71 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-----------TTSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh-----------cCceEEEEecCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999996543 345678999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|+||+||||||+....++.+.+.++|++++++|+.|+++++|.++|+|.++ +.|+|||+||.++..+.++.+.|++||+
T Consensus 72 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~Iv~isS~~~~~~~~~~~~Y~asKa 150 (237)
T d1uzma1 72 GPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVSGLWGIGNQANYAASKA 150 (237)
T ss_dssp SSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCCC-----CCHHHHHHHH
T ss_pred CCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-CCCceEEEcchhhccCCcccHHHHHHHH
Confidence 999999999999988899999999999999999999999999999999854 5699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
|+.+|+|+|+.|++++|||||+|+||+|+|+|.....+ ...+.. ...+..++.+|||+|..++|+++ +.+.+++|..
T Consensus 151 al~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~-~~~~~~~~~~pl~R~~~pedvA~~v~fL~S-~~s~~itG~~ 228 (237)
T d1uzma1 151 GVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDE-RIQQGALQFIPAKRVGTPAEVAGVVSFLAS-EDASYISGAV 228 (237)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCH-HHHHHHGGGCTTCSCBCHHHHHHHHHHHHS-GGGTTCCSCE
T ss_pred HHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhccCH-HHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-chhcCCcCCe
Confidence 99999999999999999999999999999998764322 222222 22344578899999999999765 6778999987
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
|.
T Consensus 229 i~ 230 (237)
T d1uzma1 229 IP 230 (237)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-42 Score=369.91 Aligned_cols=245 Identities=28% Similarity=0.491 Sum_probs=210.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC--CcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP--GSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
++|+||++||||||+|||+++|+.|+++|++|++++|+.++++++.+++.+.+ +++.+++||++++++++++++++.+
T Consensus 6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999997654 5788999999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCcEEEEecCccCcCC--CCCChhh
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR-RPGHILNISSNAGVRP--FAGLAVY 866 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~-~~g~IV~isS~~g~~~--~~~~~~Y 866 (958)
+||+||+||||||.....++.+.+.++|++.+++|+.|++++++.++|.|++.+ .+|+||+|||.++... .++...|
T Consensus 86 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~~~~~~Y 165 (257)
T d1xg5a_ 86 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFY 165 (257)
T ss_dssp HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHHH
T ss_pred hcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCCCcccHHH
Confidence 999999999999999888999999999999999999999999999999997654 4699999999998765 4556779
Q ss_pred hHHHHHHHHHHHHHHHHh--CCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 867 TGTKYFIEGISGALRQEV--SDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el--~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
++||+|+.+|+|+|+.|+ +++|||||+|+||+++|++.....+.............+.++|+|+|++++|++++++..
T Consensus 166 ~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~a~~ 245 (257)
T d1xg5a_ 166 SATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAHI 245 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHHC---CBCHHHHHHHHHHHHHSCTTE
T ss_pred HHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcCCCCCCcCHHHHHHHHHHHhCChhcC
Confidence 999999999999999998 789999999999999999865433222111112224457889999999999988877654
Q ss_pred cccceEecCCCC
Q psy4557 945 AVNSILIEPPLA 956 (958)
Q Consensus 945 ~i~~~~i~p~~~ 956 (958)
.+.++.|+|+.+
T Consensus 246 itG~i~i~~~g~ 257 (257)
T d1xg5a_ 246 QIGDIQMRPTGS 257 (257)
T ss_dssp EEEEEEEEETTC
T ss_pred eECCEEEEeCCC
Confidence 444478999864
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-42 Score=374.06 Aligned_cols=238 Identities=26% Similarity=0.342 Sum_probs=195.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC---CcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP---GSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+ .++..+++|++++++++++++++.+
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999987653 3588999999999999999999999
Q ss_pred HcCCccEEEEccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCcc-CcCCCCCCh
Q psy4557 790 ELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNA-GVRPFAGLA 864 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~-g~~~~~~~~ 864 (958)
+||+||+||||||+... ..+.+.+.|+|+++|++|+.|+++++|+++|+|.+. +|.||+++|.. +..+.|+.+
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~iI~~~S~~~~~~~~~~~~ 159 (264)
T d1spxa_ 82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST--KGEIVNISSIASGLHATPDFP 159 (264)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCTTSSSSCCTTSH
T ss_pred HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc--cCcceeeeeeccccccCCCch
Confidence 99999999999998643 345667899999999999999999999999999743 36666666654 678999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh--------hhhh-ccccCCCCCCHHHHHHHHH
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV--------VDKY-DISKAVPVLTTKEISQSII 935 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~--------~~~~-~~~~~~~~~~p~~ia~~i~ 935 (958)
.|++||+|+.+|+|+||.|++++|||||+|+||+|+|+|......++. .... ...+..++.+|+|+|.+++
T Consensus 160 ~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~ 239 (264)
T d1spxa_ 160 YYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIA 239 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSSCBCHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999764321110 0111 1123457889999999999
Q ss_pred HHhcCCCCccccceEec
Q psy4557 936 FALLQPSHSAVNSILIE 952 (958)
Q Consensus 936 ~~l~~~~~~~i~~~~i~ 952 (958)
|+++++.+.+++|..|.
T Consensus 240 fL~S~~~s~~itG~~i~ 256 (264)
T d1spxa_ 240 FLADRKTSSYIIGHQLV 256 (264)
T ss_dssp HHHCHHHHTTCCSCEEE
T ss_pred HHhCCcccCCccCceEE
Confidence 98876777888887653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=100.00 E-value=1.7e-42 Score=371.64 Aligned_cols=241 Identities=21% Similarity=0.264 Sum_probs=211.5
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
|..+|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++..++||++++++++++++++.
T Consensus 3 ~~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 3 FTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp EEECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH
Confidence 55679999999999999999999999999999999999999999888877743 46688999999999999999999999
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-------CCC
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-------PFA 861 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-------~~~ 861 (958)
++||++|+||||||+....++.+.+.++|++++++|+.|+++++|.++|+|++++.+|+|++++|..+.. +.+
T Consensus 83 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~~~~~ 162 (260)
T d1h5qa_ 83 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSL 162 (260)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEEC
T ss_pred HHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccccccCc
Confidence 9999999999999999888999999999999999999999999999999997677788999999887654 346
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcC
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
+.+.|++||+|+.+|+|+||.|++++|||||+|+||+|+|+|..... ++..+.+. ..+..++.+|+|+|..++|++ +
T Consensus 163 ~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~-~~~~~~~~~~~pl~R~g~pedvA~~v~fL~-S 240 (260)
T d1h5qa_ 163 TQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMD-KKIRDHQASNIPLNRFAQPEEMTGQAILLL-S 240 (260)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC-HHHHHHHHHTCTTSSCBCGGGGHHHHHHHH-S
T ss_pred cccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhccC-HHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-c
Confidence 78899999999999999999999999999999999999999976543 22222222 223457889999999999966 4
Q ss_pred CCCccccceEec
Q psy4557 941 PSHSAVNSILIE 952 (958)
Q Consensus 941 ~~~~~i~~~~i~ 952 (958)
+.+.++||..|.
T Consensus 241 ~~s~~itG~~i~ 252 (260)
T d1h5qa_ 241 DHATYMTGGEYF 252 (260)
T ss_dssp GGGTTCCSCEEE
T ss_pred chhCCCcCceEE
Confidence 777899987763
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=1.5e-42 Score=374.37 Aligned_cols=238 Identities=22% Similarity=0.318 Sum_probs=202.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC---CcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP---GSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
++|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+ .++..++||++++++++++++++.
T Consensus 1 prL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 1 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999987653 468899999999999999999999
Q ss_pred HHcCCccEEEEccccCCCccc----cCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEec-CccCcCCCCCC
Q psy4557 789 AELGHIDILVNNAGVMYFTLM----EKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNIS-SNAGVRPFAGL 863 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~----~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~is-S~~g~~~~~~~ 863 (958)
++||+||+||||||+....++ .+.+.++|++++++|+.|+++++|+++|+|+++ + |.||+++ |.++..+.|+.
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~-g~iI~~~Ss~a~~~~~~~~ 158 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-K-GEIVNVSSIVAGPQAQPDF 158 (272)
T ss_dssp HHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T-CEEEEECCGGGSSSCCCSS
T ss_pred HHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-C-CccccccchhccccCCCCc
Confidence 999999999999999765544 467888999999999999999999999999743 3 4555555 46789999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh-hh-------hh-ccccCCCCCCHHHHHHHH
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV-VD-------KY-DISKAVPVLTTKEISQSI 934 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~-~~-------~~-~~~~~~~~~~p~~ia~~i 934 (958)
+.|++||+|+.+|+|+||.|++++|||||+|+||+|+|+|.......+. .. .. ...+..++.+|+|+|..+
T Consensus 159 ~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~pediA~~v 238 (272)
T d1xkqa_ 159 LYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANII 238 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHH
Confidence 9999999999999999999999999999999999999998654322211 11 01 111234678999999999
Q ss_pred HHHhcCCCCccccceEe
Q psy4557 935 IFALLQPSHSAVNSILI 951 (958)
Q Consensus 935 ~~~l~~~~~~~i~~~~i 951 (958)
+|+++.+.+.+++|..|
T Consensus 239 ~fL~S~~as~~iTG~~i 255 (272)
T d1xkqa_ 239 LFLADRNLSFYILGQSI 255 (272)
T ss_dssp HHHHCHHHHTTCCSCEE
T ss_pred HHHhCcchhCCccCeEE
Confidence 99876555567888765
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-42 Score=365.98 Aligned_cols=233 Identities=22% Similarity=0.320 Sum_probs=203.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
...|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .+..+++|++|++++++++ ++
T Consensus 2 ~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~d~~~v~~~~----~~ 73 (244)
T d1pr9a_ 2 ELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERAL----GS 73 (244)
T ss_dssp CCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHH----TT
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHH----HH
Confidence 456899999999999999999999999999999999999999998887764 3567889999999886654 57
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+|+||+||||||+....++.+.+.++|++++++|+.|+++++|.++|.|.+++..|+||++||.++..+.|+...|++||
T Consensus 74 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~asK 153 (244)
T d1pr9a_ 74 VGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTK 153 (244)
T ss_dssp CCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHH
T ss_pred hCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccccchhhhhhhH
Confidence 89999999999999889999999999999999999999999999999876666679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+|+.+|+|+||.|++++|||||+|+||+|+|+|...... .+..+.. ...+..++.+|+|+|..++|++ ++.+.+++|
T Consensus 154 aal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peevA~~v~fL~-S~~a~~itG 232 (244)
T d1pr9a_ 154 GALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLL-SDRSGMTTG 232 (244)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTTCSCBCHHHHHHHHHHHH-SGGGTTCCS
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-CchhCCcCC
Confidence 999999999999999999999999999999998765432 2222222 2223456889999999999965 577788998
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..|.
T Consensus 233 ~~i~ 236 (244)
T d1pr9a_ 233 STLP 236 (244)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 7663
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=2.2e-42 Score=373.45 Aligned_cols=239 Identities=23% Similarity=0.289 Sum_probs=206.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC---CcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP---GSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+|+||++|||||++|||+++|++|+++|++|++++|+.++++++++++.+.+ .++..+++|++++++++++++++.+
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999987654 3688999999999999999999999
Q ss_pred HcCCccEEEEccccCCCc--cccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhh
Q psy4557 790 ELGHIDILVNNAGVMYFT--LMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~--~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
+||+||+||||||..... ...+.+.++|++++++|+.|+++++|+++|+|++ +++|+|+++||.++..+.++++.|+
T Consensus 81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~ii~~ss~~~~~~~~~~~~Y~ 159 (274)
T d1xhla_ 81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-TKGEIVNVSSIVAGPQAHSGYPYYA 159 (274)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEECCGGGSSSCCTTSHHHH
T ss_pred HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-cccccccchhhhhccccCCCCceeh
Confidence 999999999999986443 4566789999999999999999999999999985 4568999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh-hh---h-h----ccccCCCCCCHHHHHHHHHHHh
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV-VD---K-Y----DISKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~-~~---~-~----~~~~~~~~~~p~~ia~~i~~~l 938 (958)
+||+|+.+|+|+||.|++++|||||+|+||+|+|+|.......+. .+ . . ...+..++.+|+|+|..++|++
T Consensus 160 asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPlgR~g~pediA~~v~fL~ 239 (274)
T d1xhla_ 160 CAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLA 239 (274)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHc
Confidence 999999999999999999999999999999999998654322111 11 1 1 1113346789999999999987
Q ss_pred cCCCCccccceEec
Q psy4557 939 LQPSHSAVNSILIE 952 (958)
Q Consensus 939 ~~~~~~~i~~~~i~ 952 (958)
+.+.+.+++|..|.
T Consensus 240 S~d~s~~itG~~i~ 253 (274)
T d1xhla_ 240 DRNLSSYIIGQSIV 253 (274)
T ss_dssp CHHHHTTCCSCEEE
T ss_pred CCccccCccCcEEE
Confidence 65567788887663
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.7e-42 Score=365.35 Aligned_cols=231 Identities=26% Similarity=0.347 Sum_probs=201.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .+..+.+|++++++++++ .+++|
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~~~~~v~~~----~~~~g 73 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDWDATEKA----LGGIG 73 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHH----HTTCC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHH----HHHcC
Confidence 4899999999999999999999999999999999999999988887764 366788999999987655 45789
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
+||+||||||+....++.+++.++|++++++|+.|+++++|.++|.|++++.+|+|||+||.++..+.|+.+.|++||+|
T Consensus 74 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asKaa 153 (242)
T d1cyda_ 74 PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGA 153 (242)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHH
T ss_pred CCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCCccccccchHHH
Confidence 99999999999988899999999999999999999999999999988766667999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceE
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSIL 950 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~ 950 (958)
+.+|+|+|+.|++++|||||+|+||+|+|+|..... +++..+... ..+..++.+|+|+|..++|++ ++.+.+++|..
T Consensus 154 l~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peeva~~v~fL~-S~~s~~itG~~ 232 (242)
T d1cyda_ 154 MTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLL-SDRSASTSGGG 232 (242)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSSCBCHHHHHHHHHHHH-SGGGTTCCSSE
T ss_pred HHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-CchhcCcCCce
Confidence 999999999999999999999999999999865432 222222222 223457889999999999965 57778899876
Q ss_pred ec
Q psy4557 951 IE 952 (958)
Q Consensus 951 i~ 952 (958)
|.
T Consensus 233 i~ 234 (242)
T d1cyda_ 233 IL 234 (242)
T ss_dssp EE
T ss_pred EE
Confidence 63
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=100.00 E-value=1.5e-41 Score=363.26 Aligned_cols=237 Identities=24% Similarity=0.376 Sum_probs=207.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL- 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~- 791 (958)
+|+||+||||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+..+.++.+|++++++++++++++.+.+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 82 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999999999999998888889999999999999999999999998
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||.....++.+++.++|++++++|+.++++++++++|.|.+ +..|+||++||.++..+.|+...|+++|+
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~-~~~g~ii~isS~~~~~~~~~~~~Y~~sK~ 161 (258)
T d1ae1a_ 83 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKA-SQNGNVIFLSSIAGFSALPSVSLYSASKG 161 (258)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTSEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred CCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccc-ccccccccccccccccccccchhHHHHHH
Confidence 68999999999998889999999999999999999999999999999985 45799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-----hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 872 FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-----RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 872 a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-----~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
|+++|+|+||.|++++|||||+|+||+|+|+|...... .+..+... ..+..++.+|+|+|.+++|++ ++.+.+
T Consensus 162 al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plgR~~~pediA~~v~fL~-S~~s~~ 240 (258)
T d1ae1a_ 162 AINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLC-FPAASY 240 (258)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTCSCBCHHHHHHHHHHHH-SGGGTT
T ss_pred HHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-ChhhCC
Confidence 99999999999999999999999999999999765422 12222222 123456889999999999966 566688
Q ss_pred ccceEe
Q psy4557 946 VNSILI 951 (958)
Q Consensus 946 i~~~~i 951 (958)
++|..|
T Consensus 241 itG~~i 246 (258)
T d1ae1a_ 241 ITGQII 246 (258)
T ss_dssp CCSCEE
T ss_pred CcCcEE
Confidence 888765
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-41 Score=369.41 Aligned_cols=238 Identities=23% Similarity=0.396 Sum_probs=207.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-----CCCcEEEEEecCCCHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-----APGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-----~~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
..|+||+||||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++..++||+++++++++++++
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999888854 246789999999999999999999
Q ss_pred HHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhh
Q psy4557 787 VLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVY 866 (958)
Q Consensus 787 ~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y 866 (958)
+.+.+|+||+||||||+....++.+.+.++|++++++|+.|+++++|+++|.|.++ +.|+||++|| ++..+.|+...|
T Consensus 88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~Ii~~ss-~~~~~~~~~~~Y 165 (297)
T d1yxma1 88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKE-HGGSIVNIIV-PTKAGFPLAVHS 165 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECC-CCTTCCTTCHHH
T ss_pred HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccc-cccccccccc-cccccccccccc
Confidence 99999999999999999988899999999999999999999999999999999854 4689999866 466778999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChh---hhhhh-ccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRD---VVDKY-DISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~---~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
++||+|+.+|+|+||.|++++|||||+|+||+|+|+|........ ..+.. ...+..++.+|+|+|.+++|+++ +.
T Consensus 166 ~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~plgR~g~pedvA~~v~fL~S-d~ 244 (297)
T d1yxma1 166 GAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLS-PA 244 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHS-GG
T ss_pred hhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-ch
Confidence 999999999999999999999999999999999999875433221 11111 11234568899999999999765 67
Q ss_pred CccccceEec
Q psy4557 943 HSAVNSILIE 952 (958)
Q Consensus 943 ~~~i~~~~i~ 952 (958)
+.++||..|.
T Consensus 245 s~~iTG~~i~ 254 (297)
T d1yxma1 245 ASFITGQSVD 254 (297)
T ss_dssp GTTCCSCEEE
T ss_pred hcCcCCcEEE
Confidence 7889887764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.9e-42 Score=362.04 Aligned_cols=220 Identities=23% Similarity=0.391 Sum_probs=201.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++++||++||||||+|||+++|++|+++|++|++++|+.++++++++++.+.++++..+.||++|+++++++++++.+++
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|++|+||||||+.....+.+.+.++|++++++|++|++++++.++|+|.++ +.|+||+|||.++..+.|+++.|++||+
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~G~Iv~isS~~~~~~~~~~~~Y~asKa 161 (244)
T d1yb1a_ 83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAGHVSVPFLLAYCSSKF 161 (244)
T ss_dssp CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc-CCceEEEeecchhcCCCCCcHHHHHHHH
Confidence 999999999999998889999999999999999999999999999999854 5799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC---CCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 872 FIEGISGALRQEVSD---RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 872 a~~~l~~~la~el~~---~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
|+.+|+++|+.|+++ .||+||+|+||+|+|+|..... . ...+.++|+++|+.++..+..+.
T Consensus 162 al~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~-----~-----~~~~~~~pe~va~~i~~~~~~~~ 225 (244)
T d1yb1a_ 162 AAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPS-----T-----SLGPTLEPEEVVNRLMHGILTEQ 225 (244)
T ss_dssp HHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTH-----H-----HHCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcC-----c-----cccCCCCHHHHHHHHHHHHhcCC
Confidence 999999999999866 5899999999999999875421 1 11256789999999998765543
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=100.00 E-value=1.3e-40 Score=359.93 Aligned_cols=234 Identities=25% Similarity=0.418 Sum_probs=200.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+|+||++||||||+|||+++|++|+++|++|++++|+.++++++.+++. .++..+.+|++++++++++++++.++||
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 78 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG---DNVLGIVGDVRSLEDQKQAASRCVARFG 78 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---CCeeEEecccccHHHHHHHHHHHHHHhC
Confidence 4899999999999999999999999999999999999999988887763 5788999999999999999999999999
Q ss_pred CccEEEEccccCCCcc-----ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhh
Q psy4557 793 HIDILVNNAGVMYFTL-----MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYT 867 (958)
Q Consensus 793 ~iDilInnAG~~~~~~-----~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~ 867 (958)
++|+||||||+..... ..+.+.+.|+++|++|+.|+++++|+++|+|+++ +|+||+++|.++..+.++.+.|+
T Consensus 79 ~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~g~iI~i~S~~~~~~~~~~~~Y~ 156 (276)
T d1bdba_ 79 KIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVAS--RGNVIFTISNAGFYPNGGGPLYT 156 (276)
T ss_dssp CCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCGGGTSTTSSCHHHH
T ss_pred CcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhc--CCCceeeeechhccCCCCCchHH
Confidence 9999999999864332 3445567899999999999999999999999743 48999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC---------hhhhhhhc-cccCCCCCCHHHHHHHHHHH
Q psy4557 868 GTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD---------RDVVDKYD-ISKAVPVLTTKEISQSIIFA 937 (958)
Q Consensus 868 asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~---------~~~~~~~~-~~~~~~~~~p~~ia~~i~~~ 937 (958)
+||+|+.+|+|+||.|+++. ||||+|+||+|+|+|...... .+..+... ..+..++.+|+|+|.+++|+
T Consensus 157 asKaal~~ltr~lA~ela~~-IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeva~~v~fL 235 (276)
T d1bdba_ 157 AAKHAIVGLVRELAFELAPY-VRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGRMPEVEEYTGAYVFF 235 (276)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-CEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTSSCCCGGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcc-eEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999975 999999999999998654211 01111111 12345688999999999998
Q ss_pred hcCCCCccccceEec
Q psy4557 938 LLQPSHSAVNSILIE 952 (958)
Q Consensus 938 l~~~~~~~i~~~~i~ 952 (958)
++.+.+.++||..|.
T Consensus 236 ~S~~~a~~itG~~i~ 250 (276)
T d1bdba_ 236 ATRGDAAPATGALLN 250 (276)
T ss_dssp HCHHHHTTCSSCEEE
T ss_pred cCCcccCCeeCcEEE
Confidence 876777888887763
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-40 Score=355.97 Aligned_cols=227 Identities=27% Similarity=0.423 Sum_probs=195.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..||++||||||+|||+++|+.|+++|++|++++|+.++++++.+++.+. +.++.+++||++++++++++++++.++|
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999999999999999888654 4578899999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR--RPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~--~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
|+||+||||||+... ++|++++++|+.+++++++.++|+|.+++ .+|+|||+||.++..+.|+.++|++|
T Consensus 81 G~iDilVnnAg~~~~--------~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~as 152 (254)
T d2gdza1 81 GRLDILVNNAGVNNE--------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCAS 152 (254)
T ss_dssp SCCCEEEECCCCCCS--------SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred CCcCeeccccccccc--------ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCCCccchHHH
Confidence 999999999998643 45899999999999999999999997543 35899999999999999999999999
Q ss_pred HHHHHHHHHH--HHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhh-------h-ccccCCCCCCHHHHHHHHHHHhc
Q psy4557 870 KYFIEGISGA--LRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDK-------Y-DISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 870 Kaa~~~l~~~--la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~-------~-~~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
|+|+.+|+|+ |+.|++++|||||+|+||+|+|+|+......+.... . ...+..++.+|+|+|++++|+++
T Consensus 153 Kaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s 232 (254)
T d2gdza1 153 KHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIE 232 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHc
Confidence 9999999997 788999999999999999999998754332221111 1 01122467899999999999887
Q ss_pred CCCCccccceEe
Q psy4557 940 QPSHSAVNSILI 951 (958)
Q Consensus 940 ~~~~~~i~~~~i 951 (958)
++. +||..|
T Consensus 233 ~~~---itG~~i 241 (254)
T d2gdza1 233 DDA---LNGAIM 241 (254)
T ss_dssp CTT---CSSCEE
T ss_pred CCC---CCCCEE
Confidence 542 777665
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=100.00 E-value=1.2e-40 Score=352.61 Aligned_cols=230 Identities=24% Similarity=0.308 Sum_probs=196.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.|+||++||||||+|||+++|++|+++|++|++++|+.++++++.+++ ++++.++++|++++++++++++++.++||
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dls~~~~i~~~~~~i~~~~g 78 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL---EAEAIAVVADVSDPKAVEAVFAEALEEFG 78 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---CSSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999998877665544 56788999999999999999999999999
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHH
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYF 872 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa 872 (958)
++|+||||||.....++.+.+.++|++++++|+.+++.++|.++|+|. +.+.|+++||.+ ..+.|++..|+++|+|
T Consensus 79 ~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~---~~~~i~~~ss~a-~~~~~~~~~Y~~sK~a 154 (241)
T d2a4ka1 79 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLE---EGGSLVLTGSVA-GLGAFGLAHYAAGKLG 154 (241)
T ss_dssp CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCC---TTCEEEEECCCT-TCCHHHHHHHHHCSSH
T ss_pred CccEeccccccccccchhhhhccccccccccccccccccccccccccc---cccceeeccccc-cccccCccccchhhHH
Confidence 999999999999888999999999999999999999999999999885 235666666655 4556889999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
+++|+|+||.|++++|||||||+||+|+|+|.....+ +..+.+ ...+..++.+|+|+|+.++|++ ++.+.++||..|
T Consensus 155 l~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~-~~~~~~~~~~p~~r~~~p~dva~~v~fL~-S~~s~~itG~~i 232 (241)
T d2a4ka1 155 VVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPP-WAWEQEVGASPLGRAGRPEEVAQAALFLL-SEESAYITGQAL 232 (241)
T ss_dssp HHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCH-HHHHHHHHTSTTCSCBCHHHHHHHHHHHH-SGGGTTCCSCEE
T ss_pred HHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhhhH-hHHHHHHhCCCCCCCcCHHHHHHHHHHHh-cchhCCCcCceE
Confidence 9999999999999999999999999999999765433 222222 2334557889999999999966 577788888665
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=1.4e-40 Score=354.83 Aligned_cols=227 Identities=19% Similarity=0.247 Sum_probs=197.4
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
++|||||++|||+++|++|+++|++|++++|+.++++++...... ..++|++++++++++++++.++||+||+|
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~------~~~~dv~~~~~~~~~~~~~~~~~G~iDiL 75 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET------YPQLKPMSEQEPAELIEAVTSAYGQVDVL 75 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH------CTTSEECCCCSHHHHHHHHHHHHSCCCEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCc------EEEeccCCHHHHHHHHHHHHHHcCCCCEE
Confidence 799999999999999999999999999999999988887665433 23589999999999999999999999999
Q ss_pred EEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHH
Q psy4557 798 VNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGI 876 (958)
Q Consensus 798 InnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l 876 (958)
|||||+.. ..++.+.+.++|++++++|+.|+++++|+++|+|+++ +.|+|||+||.++..+.++.+.|++||+|+.+|
T Consensus 76 VnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~IV~isS~~~~~~~~~~~~Y~asKaal~~l 154 (252)
T d1zmta1 76 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR-KSGHIIFITSATPFGPWKELSTYTSARAGACTL 154 (252)
T ss_dssp EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCSTTTSCCTTCHHHHHHHHHHHHH
T ss_pred EECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccc-ccceeecccccccccccccccccccccccHHHH
Confidence 99999864 5688999999999999999999999999999999854 469999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh-------hhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccc
Q psy4557 877 SGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR-------DVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNS 948 (958)
Q Consensus 877 ~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~-------~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~ 948 (958)
+|+||.|++++|||||+|+||+|+|+|....... +..+... ..+..|+.+|+|+|..++|++ ++.+.+++|
T Consensus 155 t~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~R~g~pedvA~~v~fL~-S~~s~~iTG 233 (252)
T d1zmta1 155 ANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLA-SGSCDYLTG 233 (252)
T ss_dssp HHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSSCBCHHHHHHHHHHHH-TTSCGGGTT
T ss_pred HHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-CchhcCCcC
Confidence 9999999999999999999999999997654321 1111111 223457889999999999965 577789998
Q ss_pred eEec
Q psy4557 949 ILIE 952 (958)
Q Consensus 949 ~~i~ 952 (958)
..|.
T Consensus 234 ~~i~ 237 (252)
T d1zmta1 234 QVFW 237 (252)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 7764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.4e-40 Score=345.75 Aligned_cols=222 Identities=22% Similarity=0.291 Sum_probs=191.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
|+||++|||||++|||+++|++|+++|++|++++|+.+.+++. + ..++.||+++. ++.+.+++|+
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~-------~--~~~~~~Dv~~~------~~~~~~~~g~ 66 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS-------G--HRYVVCDLRKD------LDLLFEKVKE 66 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT-------C--SEEEECCTTTC------HHHHHHHSCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc-------C--CcEEEcchHHH------HHHHHHHhCC
Confidence 7899999999999999999999999999999999998765532 2 23567999864 4567789999
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
||+||||||+....++.+++.++|++++++|+.++++++|.++|+|++ ++.|+||+++|..+..+.++...|++||+|+
T Consensus 67 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~-~~~G~ii~i~S~~~~~~~~~~~~Y~asKaal 145 (234)
T d1o5ia_ 67 VDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKE-KGWGRIVAITSFSVISPIENLYTSNSARMAL 145 (234)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEECCGGGTSCCTTBHHHHHHHHHH
T ss_pred CcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccc-cccccccccccccccccccccccchhHHHHH
Confidence 999999999988889999999999999999999999999999999985 4569999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 874 EGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 874 ~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
.+|+|+||.|++++|||||+|+||+++|+|......++..+... ..+..++.+|+|+|..++|++ ++.+.+++|..|.
T Consensus 146 ~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~fL~-S~~s~~itG~~i~ 224 (234)
T d1o5ia_ 146 TGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQIPMRRMAKPEEIASVVAFLC-SEKASYLTGQTIV 224 (234)
T ss_dssp HHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTSTTSSCBCHHHHHHHHHHHH-SGGGTTCCSCEEE
T ss_pred HHHHHHHHHHhcccCeEEeecccCccchhhhhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-ChhhcCCcCcEEE
Confidence 99999999999999999999999999999875433333333222 223456889999999999976 4777899988764
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=1e-39 Score=349.94 Aligned_cols=237 Identities=21% Similarity=0.335 Sum_probs=204.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEe-cChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVA-RRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~-r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..|.||+||||||++|||+++|++|+++|++|++++ |+.+.++++.+++.+.++++..++||++++++++++++++.++
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999875 4566688899999888889999999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-CCCCChhhhHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGT 869 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-~~~~~~~Y~as 869 (958)
+|+||+||||||+....++.+.+.++|++++++|+.++++++|.++|+|++ .|++++++|..+.. +.|++..|++|
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~---~g~~iii~s~~~~~~~~~~~~~Y~as 158 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR---GGRIILTSSIAAVMTGIPNHALYAGS 158 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE---EEEEEEECCGGGTCCSCCSCHHHHHH
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhc---CCcccccccccccccCCCCchhHHHH
Confidence 999999999999998889999999999999999999999999999999952 36777787766644 78999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC-----------CCh-hhhhhh-ccccCCCCCCHHHHHHHHHH
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS-----------TDR-DVVDKY-DISKAVPVLTTKEISQSIIF 936 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~-----------~~~-~~~~~~-~~~~~~~~~~p~~ia~~i~~ 936 (958)
|+|+.+|+|+||.|++++|||||+|+||+|+|+|.... ... +..+.. ...+..++.+|+|+|++++|
T Consensus 159 K~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~p~eVa~~v~f 238 (259)
T d1ja9a_ 159 KAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSA 238 (259)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999974311 011 111111 12234578899999999999
Q ss_pred HhcCCCCccccceEec
Q psy4557 937 ALLQPSHSAVNSILIE 952 (958)
Q Consensus 937 ~l~~~~~~~i~~~~i~ 952 (958)
+++ +.+.++||..|.
T Consensus 239 L~S-~~a~~itG~~i~ 253 (259)
T d1ja9a_ 239 LCQ-EESEWINGQVIK 253 (259)
T ss_dssp HHS-GGGTTCCSCEEE
T ss_pred HhC-chhcCCcCceEE
Confidence 655 667889988764
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=5e-40 Score=358.75 Aligned_cols=223 Identities=21% Similarity=0.313 Sum_probs=195.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC---------hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR---------IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKV 783 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~---------~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~ 783 (958)
+|+||++||||||+|||+++|++|+++|++|++++|+ .+.++++.+++..... ...+|+++.++++++
T Consensus 4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~ 80 (302)
T d1gz6a_ 4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG---KAVANYDSVEAGEKL 80 (302)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC---EEEEECCCGGGHHHH
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhccc---ccccccchHHHHHHH
Confidence 5899999999999999999999999999999998654 4567777777765543 456899999999999
Q ss_pred HHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCC
Q psy4557 784 VREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGL 863 (958)
Q Consensus 784 ~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~ 863 (958)
++++.++||+||+||||||+....++.+++.++|++++++|++|+++++|.++|+|+++ +.|+|||+||.++..+.++.
T Consensus 81 v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~IV~isS~~~~~~~~~~ 159 (302)
T d1gz6a_ 81 VKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ-NYGRIIMTASASGIYGNFGQ 159 (302)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHHCCTTC
T ss_pred HHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhC-CCcEEEEeCChhhcCCCCCc
Confidence 99999999999999999999998999999999999999999999999999999999854 46999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+.|++||+|+.+|+|+|+.|++++|||||+|+||++.|.+..... .+. .+.++|+|+|..++|+++ +..
T Consensus 160 ~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~~~-~~~---------~~~~~PedvA~~v~fL~S-~~a 228 (302)
T d1gz6a_ 160 ANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETVMP-EDL---------VEALKPEYVAPLVLWLCH-ESC 228 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGGSC-HHH---------HHHSCGGGTHHHHHHHTS-TTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhcCc-Hhh---------HhcCCHHHHHHHHHHHcC-CCc
Confidence 999999999999999999999999999999999999887644321 111 124679999999999765 444
Q ss_pred ccccceEe
Q psy4557 944 SAVNSILI 951 (958)
Q Consensus 944 ~~i~~~~i 951 (958)
+++|..|
T Consensus 229 -~itG~~i 235 (302)
T d1gz6a_ 229 -EENGGLF 235 (302)
T ss_dssp -CCCSCEE
T ss_pred -CCCCcEE
Confidence 5777655
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-39 Score=347.85 Aligned_cols=237 Identities=20% Similarity=0.291 Sum_probs=202.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHH---cCCeEEEEecChhhHHHHHHHhhcC--CCcEEEEEecCCCHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVT---LGAKVVAVARRIDRLENLKTSLQNA--PGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~---~Ga~Vi~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
+.|+||++||||||+|||+++|++|++ +|++|++++|+.++++++.+++... +.++..++||++++++++++++.
T Consensus 2 ~~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 578999999999999999999999997 7999999999999999999998643 45788999999999999999998
Q ss_pred HHH----HcCCccEEEEccccCC---CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEecCccCcC
Q psy4557 787 VLA----ELGHIDILVNNAGVMY---FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRR-PGHILNISSNAGVR 858 (958)
Q Consensus 787 ~~~----~~g~iDilInnAG~~~---~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~-~g~IV~isS~~g~~ 858 (958)
+.+ .++.+|+||||||... ..++.+.+.++|+++|++|+.|+++++|.++|+|+++++ .|+|||+||.++..
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~ 161 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence 876 3568999999999864 456789999999999999999999999999999975432 58999999999999
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----CChhhhhhhc-cccCCCCCCHHHHHHH
Q psy4557 859 PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----TDRDVVDKYD-ISKAVPVLTTKEISQS 933 (958)
Q Consensus 859 ~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~~~~~~~~~~-~~~~~~~~~p~~ia~~ 933 (958)
+.|+++.|++||+|+.+|+|+|+.| .+|||||+|+||+|+|+|.... .+++....+. .....++.+|+|+|+.
T Consensus 162 ~~~~~~~Y~asKaal~~lt~~la~e--~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~evA~~ 239 (259)
T d1oaaa_ 162 PYKGWGLYCAGKAARDMLYQVLAAE--EPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQK 239 (259)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHH--CTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999 6799999999999999986421 1222222221 1234467899999999
Q ss_pred HHHHhcCCCCccccceEec
Q psy4557 934 IIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 934 i~~~l~~~~~~~i~~~~i~ 952 (958)
+++++++. .+++|..|+
T Consensus 240 i~~ll~~~--s~~TG~~id 256 (259)
T d1oaaa_ 240 LLGLLQKD--TFQSGAHVD 256 (259)
T ss_dssp HHHHHHHC--CSCTTEEEE
T ss_pred HHHHhhhc--cCCCCCeEE
Confidence 99988753 478888876
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-39 Score=349.21 Aligned_cols=239 Identities=18% Similarity=0.231 Sum_probs=195.9
Q ss_pred ccCCCCCCCEEEEEcCCc--hHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHH
Q psy4557 709 VFGNTLANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 709 ~~~~~l~~k~~lITGas~--GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
|+.-+|+||++||||||| |||+++|++|+++|++|++++|+.+..++..+.. ...+...++++|+++++++++++++
T Consensus 1 M~~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~ 79 (256)
T d1ulua_ 1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLA-EALGGALLFRADVTQDEELDALFAG 79 (256)
T ss_dssp CEEECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH-HHTTCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhh-hccCcccccccccCCHHHHHHHHHH
Confidence 345679999999999886 9999999999999999999999876655554443 3345677899999999999999999
Q ss_pred HHHHcCCccEEEEccccCCC----ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC
Q psy4557 787 VLAELGHIDILVNNAGVMYF----TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG 862 (958)
Q Consensus 787 ~~~~~g~iDilInnAG~~~~----~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~ 862 (958)
+.+.+|+||+||||||+... ..+.+.+.++|++++++|+.+++.++|.++|+|. ++|+|||+||.++..+.|+
T Consensus 80 ~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~---~~G~Iv~isS~~~~~~~~~ 156 (256)
T d1ulua_ 80 VKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLR---EGGGIVTLTYYASEKVVPK 156 (256)
T ss_dssp HHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEE---EEEEEEEEECGGGTSBCTT
T ss_pred HHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhc---cCCEEEEEeehHhcCCCCC
Confidence 99999999999999998642 3467889999999999999999999999999885 2489999999999999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhhc-cccCCCCCCHHHHHHHHHHHhcC
Q psy4557 863 LAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKYD-ISKAVPVLTTKEISQSIIFALLQ 940 (958)
Q Consensus 863 ~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~ 940 (958)
+..|++||+|+.+|+|+||.||+++|||||+|+||+|+|++...... ++..+... ..+..++.+|+|+|..++|+++
T Consensus 157 ~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S- 235 (256)
T d1ulua_ 157 YNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLS- 235 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHS-
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-
Confidence 99999999999999999999999999999999999999998765432 22222222 2234578899999999999665
Q ss_pred CCCccccceEec
Q psy4557 941 PSHSAVNSILIE 952 (958)
Q Consensus 941 ~~~~~i~~~~i~ 952 (958)
+.+.+++|..|.
T Consensus 236 ~~s~~itG~~i~ 247 (256)
T d1ulua_ 236 PLASGITGEVVY 247 (256)
T ss_dssp GGGTTCCSCEEE
T ss_pred chhCCccCCeEE
Confidence 777889887653
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=3e-39 Score=348.82 Aligned_cols=237 Identities=22% Similarity=0.369 Sum_probs=205.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+|+||++||||||+|||+++|++|+++|++|++++|+ .+.++++.+++.+.+.++.++++|++++++++++++++.+.
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999877 56788889899888889999999999999999999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-CCCCChhhhHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-PFAGLAVYTGT 869 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-~~~~~~~Y~as 869 (958)
+|++|++|||||.....++.+.+.++|++++++|+.|+++++|+++|+|. ..|++++++|..+.. +.++++.|++|
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~---~~g~~i~i~s~~~~~~~~~~~~~Y~as 170 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLE---IGGRLILMGSITGQAKAVPKHAVYSGS 170 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSC---TTCEEEEECCGGGTCSSCSSCHHHHHH
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccc---cccccccccccccccccccchhhHHHH
Confidence 99999999999999888999999999999999999999999999999996 247899998887654 57788899999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----------Chhhhhh---hccccCCCCCCHHHHHHHHHH
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----------DRDVVDK---YDISKAVPVLTTKEISQSIIF 936 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----------~~~~~~~---~~~~~~~~~~~p~~ia~~i~~ 936 (958)
|+|+++|+|+||.||+++|||||+|+||+|+|+|..... ..+.... ....+..++.+|+|+|.+++|
T Consensus 171 Kaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v~f 250 (272)
T d1g0oa_ 171 KGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCF 250 (272)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccCCCCCCcCHHHHHHHHHH
Confidence 999999999999999999999999999999999753210 0111111 112234578999999999999
Q ss_pred HhcCCCCccccceEec
Q psy4557 937 ALLQPSHSAVNSILIE 952 (958)
Q Consensus 937 ~l~~~~~~~i~~~~i~ 952 (958)
+++ +.+.++||..|.
T Consensus 251 L~s-~~s~~itG~~i~ 265 (272)
T d1g0oa_ 251 LAS-NDGGWVTGKVIG 265 (272)
T ss_dssp HHS-GGGTTCCSCEEE
T ss_pred HhC-chhcCccCceEe
Confidence 765 677889988763
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=100.00 E-value=8.8e-38 Score=341.52 Aligned_cols=241 Identities=21% Similarity=0.298 Sum_probs=208.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.++|+||++||||||+|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++++|++++++++++++.+.+
T Consensus 20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence 4689999999999999999999999999999999999999999998887754 356788999999999999999999999
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
.+|++|+||||||......+.+.+.++|++++++|+.+.+.+++...+.+...+..+.|++++|.++..+.++...|++|
T Consensus 100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~~~~~Ysas 179 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASA 179 (294)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTCHHHHHH
T ss_pred hccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcccccchHHHH
Confidence 99999999999999988889999999999999999999999999888888767778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh--hhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccc
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR--DVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAV 946 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~--~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i 946 (958)
|+|+.+|+|+||.|++++|||||+|+||+|+|++....... ...+.. ...+..++.+|+|+|.+++|+++ +.+.++
T Consensus 180 Kaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~fL~s-d~s~~i 258 (294)
T d1w6ua_ 180 KAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCS-DYASWI 258 (294)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTSSCBCHHHHHHHHHHHTS-GGGTTC
T ss_pred HHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC-chhcCC
Confidence 99999999999999999999999999999999987653221 112222 22234578899999999999765 667888
Q ss_pred cceEec
Q psy4557 947 NSILIE 952 (958)
Q Consensus 947 ~~~~i~ 952 (958)
+|..|.
T Consensus 259 tG~~i~ 264 (294)
T d1w6ua_ 259 NGAVIK 264 (294)
T ss_dssp CSCEEE
T ss_pred CCcEEE
Confidence 887663
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=100.00 E-value=1.7e-38 Score=338.51 Aligned_cols=221 Identities=22% Similarity=0.315 Sum_probs=186.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-CCCcEEEEEecCC-CHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-APGSIIVKKLDVT-IENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-~~~~~~~~~~Dvs-~~~~v~~~~~~~~~~ 790 (958)
+|+||++|||||++|||+++|++|+++|++|++++|+.++.+++.+.... ...++.++.+|++ +.++++++++++.++
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 81 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999988877666543332 3457888999998 677899999999999
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCcEEEEecCccCcCCCCCChhhhH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR--RPGHILNISSNAGVRPFAGLAVYTG 868 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~--~~g~IV~isS~~g~~~~~~~~~Y~a 868 (958)
+|+||+||||||.. +.+.|++++++|++|++++++.++|.|.+++ ..|+|||+||.++..+.+++++|++
T Consensus 82 ~g~iDilvnnAG~~--------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~a 153 (254)
T d1sbya1 82 LKTVDILINGAGIL--------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSA 153 (254)
T ss_dssp HSCCCEEEECCCCC--------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHHHH
T ss_pred cCCCCEEEeCCCCC--------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCCCCHHHHH
Confidence 99999999999964 4577999999999999999999999997543 4689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhh-hh-ccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVD-KY-DISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~-~~-~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
||+|+.+|+|+|+.|++++|||||+|+||+|+|+|........... .. ......+..+||++|+.+++++...
T Consensus 154 sKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~va~~~~~~~~~~ 228 (254)
T d1sbya1 154 SKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEAN 228 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTSCCEEHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhccccCCCCCHHHHHHHHHHhhhCC
Confidence 9999999999999999999999999999999999865432211111 11 1122345678999999999877543
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-38 Score=345.08 Aligned_cols=230 Identities=23% Similarity=0.361 Sum_probs=186.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEE---EecChhh---HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVA---VARRIDR---LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~---~~r~~~~---l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.|+|||||||+|||+++|++|+++|++|++ ++|+.+. +.+..+++...++++..+.||+++.++++++++++.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 589999999999999999999999997554 4565444 4455556666678899999999999999999988753
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHH
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGT 869 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~as 869 (958)
|++|+||||||.....++.+.+.++|++++++|++|+++++|+++|+|+++ +.|+|||+||++|..+.|+.+.|++|
T Consensus 82 --g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~-~~G~Iv~isS~~g~~~~~~~~~Y~as 158 (285)
T d1jtva_ 82 --GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR-GSGRVLVTGSVGGLMGLPFNDVYCAS 158 (285)
T ss_dssp --SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEEGGGTSCCTTCHHHHHH
T ss_pred --cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHc-CCCceEEEechhhcCCCCCchHHHHH
Confidence 899999999999988899999999999999999999999999999999854 46999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh-h---------hhhhhc-------cccCCCCCCHHHHHH
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR-D---------VVDKYD-------ISKAVPVLTTKEISQ 932 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~-~---------~~~~~~-------~~~~~~~~~p~~ia~ 932 (958)
|+|+.+|+++|+.|++++|||||+|+||+|+|+|....... + ....+. .....+..+|||+|+
T Consensus 159 Kaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PeeVA~ 238 (285)
T d1jtva_ 159 KFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAE 238 (285)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHHHHhhhhcccCCCHHHHHH
Confidence 99999999999999999999999999999999997653211 1 001000 001124679999999
Q ss_pred HHHHHhcCC--CCccccc
Q psy4557 933 SIIFALLQP--SHSAVNS 948 (958)
Q Consensus 933 ~i~~~l~~~--~~~~i~~ 948 (958)
++++++.++ ...++++
T Consensus 239 ~v~~~~~~~~p~~ry~~g 256 (285)
T d1jtva_ 239 VFLTALRAPKPTLRYFTT 256 (285)
T ss_dssp HHHHHHHCSSCCSEEESC
T ss_pred HHHHHHhCCCCCeEEecH
Confidence 999988755 3444443
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-37 Score=330.24 Aligned_cols=233 Identities=23% Similarity=0.300 Sum_probs=197.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+|+||++||||||+|||+++|++|+++|++|++++|+.++++++.+++. .......+|+.+.+.++..+..+...++
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLG---NNCVFAPADVTSEKDVQTALALAKGKFG 78 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHC---TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC---CCcccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999999999998888774 4577889999999999999999999999
Q ss_pred CccEEEEccccCCC------ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-----CCCcEEEEecCccCcCCCC
Q psy4557 793 HIDILVNNAGVMYF------TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS-----RRPGHILNISSNAGVRPFA 861 (958)
Q Consensus 793 ~iDilInnAG~~~~------~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~-----~~~g~IV~isS~~g~~~~~ 861 (958)
.+|.+++|+++... .++.+.+.++|++++++|+.|+++++|+++|+|... .++|+|||+||+++..+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~ 158 (248)
T d2o23a1 79 RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQV 158 (248)
T ss_dssp CCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT
T ss_pred cccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccCCC
Confidence 99999999887532 345677899999999999999999999999998642 2468999999999999999
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh-c-cccCCCCCCHHHHHHHHHHHhc
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY-D-ISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~-~-~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
++++|++||+|+.+|+|+|+.|++++|||||+|+||+++|+|.....+.. .+.. . .+...|+.+|+|+|.+++|+++
T Consensus 159 ~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~-~~~~~~~~pl~~R~g~peevA~~v~fL~s 237 (248)
T d2o23a1 159 GQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKV-CNFLASQVPFPSRLGDPAEYAHLVQAIIE 237 (248)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-----------CHHHHTCSSSCSCBCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCHHH-HHHHHhcCCCCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999976543221 1111 1 1123568899999999999875
Q ss_pred CCCCccccceEec
Q psy4557 940 QPSHSAVNSILIE 952 (958)
Q Consensus 940 ~~~~~~i~~~~i~ 952 (958)
..++||..|.
T Consensus 238 ---~~~itGq~I~ 247 (248)
T d2o23a1 238 ---NPFLNGEVIR 247 (248)
T ss_dssp ---CTTCCSCEEE
T ss_pred ---CCCCCceEeE
Confidence 3589988763
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-38 Score=334.31 Aligned_cols=230 Identities=24% Similarity=0.405 Sum_probs=192.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
++|+||++||||||+|||+++|+.|+++|++|++++|++++++++.+ . ..+....+|+++.+.+ +...+.+
T Consensus 2 ~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~----~-~~~~~~~~d~~~~~~~----~~~~~~~ 72 (245)
T d2ag5a1 2 GRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK----Y-PGIQTRVLDVTKKKQI----DQFANEV 72 (245)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG----S-TTEEEEECCTTCHHHH----HHHHHHC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----c-cCCceeeeeccccccc----ccccccc
Confidence 45999999999999999999999999999999999999887766543 2 3466788899876554 4556678
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc-CCCCCChhhhHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV-RPFAGLAVYTGTK 870 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~-~~~~~~~~Y~asK 870 (958)
+++|+||||||.....++.+.+.++|++++++|+.|+++++|.++|+|.+ ++.|+||++||.++. .+.++...|+++|
T Consensus 73 ~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~-~~~g~Ii~isS~~~~~~~~~~~~~Y~~sK 151 (245)
T d2ag5a1 73 ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLA-QKSGNIINMSSVASSVKGVVNRCVYSTTK 151 (245)
T ss_dssp SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEECCSBTTTBCCTTBHHHHHHH
T ss_pred ccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCccccc-CCCceeeeeechhhccCCccchhHHHHHH
Confidence 99999999999999889999999999999999999999999999999975 456999999998875 5789999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----CCh-hhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----TDR-DVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~~~-~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
+|+++|+|+||.|++++|||||+|+||+|+|+|.... ... ...+.+ ...+..++.+|+|+|..+.|++ ++.+.
T Consensus 152 aal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pedva~~v~fL~-s~~s~ 230 (245)
T d2ag5a1 152 AAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVYLA-SDESA 230 (245)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCEEHHHHHHHHHHHH-SGGGT
T ss_pred HHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-ChhhC
Confidence 9999999999999999999999999999999986431 111 111111 1223456889999999999965 47778
Q ss_pred cccceEec
Q psy4557 945 AVNSILIE 952 (958)
Q Consensus 945 ~i~~~~i~ 952 (958)
+++|..|.
T Consensus 231 ~iTG~~i~ 238 (245)
T d2ag5a1 231 YVTGNPVI 238 (245)
T ss_dssp TCCSCEEE
T ss_pred CCcCceEE
Confidence 89887663
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-37 Score=335.88 Aligned_cols=219 Identities=24% Similarity=0.310 Sum_probs=192.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHHc-CCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTL-GAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~-Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|+|||||++|||+++|++|+++ |++|++++|+.++++++.+++++.+.++.+++||+++.++++++++++.+++|+||
T Consensus 4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~iD 83 (275)
T d1wmaa1 4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 83 (275)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSEE
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCCcE
Confidence 46799999999999999999986 89999999999999999999988888899999999999999999999999999999
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC---------------
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF--------------- 860 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~--------------- 860 (958)
+||||||+.......+.+.++|+++|++|++|++++++.++|+|+ ..|+|||+||+++..+.
T Consensus 84 iLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~---~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~ 160 (275)
T d1wmaa1 84 VLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIK---PQGRVVNVSSIMSVRALKSCSPELQQKFRSET 160 (275)
T ss_dssp EEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEE---EEEEEEEECCHHHHHHHHTSCHHHHHHHHCSS
T ss_pred EEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCcccccccceeccccccchhhhhhhcccc
Confidence 999999998888888888999999999999999999999999995 24899999998764322
Q ss_pred --------------------------CCChhhhHHHHHHHHHHHHHHHHhCC----CCcEEEEEECCcccCCCCCCCCCh
Q psy4557 861 --------------------------AGLAVYTGTKYFIEGISGALRQEVSD----RNIKVTCIQAGDVKTELLSHSTDR 910 (958)
Q Consensus 861 --------------------------~~~~~Y~asKaa~~~l~~~la~el~~----~gIrv~~v~PG~v~T~~~~~~~~~ 910 (958)
.....|++||+|+.+|++.++.||++ .||+||+|+||+|+|+|....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~~~--- 237 (275)
T d1wmaa1 161 ITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPK--- 237 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCTT---
T ss_pred cchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcccCc---
Confidence 22356999999999999999998865 599999999999999986532
Q ss_pred hhhhhhccccCCCCCCHHHHHHHHHHHhc-CCCCccccceEecC
Q psy4557 911 DVVDKYDISKAVPVLTTKEISQSIIFALL-QPSHSAVNSILIEP 953 (958)
Q Consensus 911 ~~~~~~~~~~~~~~~~p~~ia~~i~~~l~-~~~~~~i~~~~i~p 953 (958)
...+|+|+|+.++++.. .+....++|.++.+
T Consensus 238 ------------~~~~pee~A~~~~~~a~~~~~~~~~~G~~~~~ 269 (275)
T d1wmaa1 238 ------------ATKSPEEGAETPVYLALLPPDAEGPHGQFVSE 269 (275)
T ss_dssp ------------CSBCHHHHTHHHHHHHSCCTTCCCCCSCEEET
T ss_pred ------------ccCCHHHHHHHHHHHHcCChhhcCCCeEEEEC
Confidence 13479999999999764 44556677777764
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-36 Score=322.53 Aligned_cols=219 Identities=22% Similarity=0.241 Sum_probs=194.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhh-cCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ-NAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~-~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.|+||++||||||+|||+++|++|+++|++|++++|+.++++++.+++. ..+.....+.+|+++.+.+...++.+.+.+
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999999988764 345678889999999999999999999999
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
|.+|++|||||......+.+.+.++|++++++|+.|++.+++.++|+|.+ ++|+||++||.+|..+.|+.+.|++||+
T Consensus 91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~--~~G~ii~isS~~~~~~~p~~~~Y~asKa 168 (269)
T d1xu9a_ 91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQ--SNGSIVVVSSLAGKVAYPMVAAYSASKF 168 (269)
T ss_dssp TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HTCEEEEEEEGGGTSCCTTCHHHHHHHH
T ss_pred CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHh--cCCcceEeccchhcCCCCCchHHHHHHH
Confidence 99999999999998888899999999999999999999999999999963 3599999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC--CCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCC
Q psy4557 872 FIEGISGALRQEVSD--RNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQP 941 (958)
Q Consensus 872 a~~~l~~~la~el~~--~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~ 941 (958)
|+.+|+++|+.|+++ .||+||+|+||+|+|+|........ ......+|+++|..++......
T Consensus 169 al~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~~~~~~~~~--------~~~~~~~~e~~a~~i~~~~~~~ 232 (269)
T d1xu9a_ 169 ALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGI--------VHMQAAPKEECALEIIKGGALR 232 (269)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSCGG--------GGGGCBCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcHHHHhccCC--------ccccCCCHHHHHHHHHHHhhcC
Confidence 999999999999974 5799999999999999854221111 1112457999999998866543
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=1.8e-35 Score=314.70 Aligned_cols=189 Identities=20% Similarity=0.280 Sum_probs=168.9
Q ss_pred CEEEEEcCCchHHHHHHHHHH---HcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH--HHc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLV---TLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL--AEL 791 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la---~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~--~~~ 791 (958)
|++||||||+|||+++|++|+ ++|++|++++|+.++++++.+... .++++.+++||++|+++++++++++. ..+
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~ 81 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK-NHSNIHILEIDLRNFDAYDKLVADIEGVTKD 81 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHH-HCTTEEEEECCTTCGGGHHHHHHHHHHHHGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHh-cCCcEEEEEEEeccHHHHHHHHhhhHHHhhc
Confidence 789999999999999999996 579999999999999988875444 35689999999999999999999985 478
Q ss_pred CCccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC----------CCCcEEEEecCccCcC--
Q psy4557 792 GHIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS----------RRPGHILNISSNAGVR-- 858 (958)
Q Consensus 792 g~iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~----------~~~g~IV~isS~~g~~-- 858 (958)
++||+||||||+... ..+.+.+.++|++++++|++|++++++.++|+|+++ ...|+|||++|++|..
T Consensus 82 ~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~~ 161 (248)
T d1snya_ 82 QGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQG 161 (248)
T ss_dssp GCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCSTT
T ss_pred CCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccCC
Confidence 999999999998655 457789999999999999999999999999999753 2468999999998764
Q ss_pred -CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCC
Q psy4557 859 -PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSH 906 (958)
Q Consensus 859 -~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~ 906 (958)
+.+++.+|++||+|+.+|+|+|+.|++++||+||+|+||+|+|+|...
T Consensus 162 ~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~~~ 210 (248)
T d1snya_ 162 NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS 210 (248)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCcccc
Confidence 456788999999999999999999999999999999999999999753
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=9.7e-35 Score=309.40 Aligned_cols=220 Identities=24% Similarity=0.326 Sum_probs=177.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
|+.|++||||||+|||+++|++|+++|+ +|++++|+.++++++++. .+.++.++++|++++++++++++++.+.+
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~---~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 77 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI---KDSRVHVLPLTVTCDKSLDTFVSKVGEIV 77 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC---CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh---hCCceEEEEEecCCHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999996 688899999998876532 34578999999999999999999999987
Q ss_pred CC--ccEEEEccccCC-CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC----------CCcEEEEecCccCcC
Q psy4557 792 GH--IDILVNNAGVMY-FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSR----------RPGHILNISSNAGVR 858 (958)
Q Consensus 792 g~--iDilInnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~----------~~g~IV~isS~~g~~ 858 (958)
+. ||+||||||+.. ..++.+.+.++|++++++|++|++++++.++|+|+++. ..|++++++|..+..
T Consensus 78 ~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 157 (250)
T d1yo6a1 78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI 157 (250)
T ss_dssp GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred CCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccc
Confidence 64 999999999865 35678899999999999999999999999999997532 247999999887654
Q ss_pred CC-------CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHH
Q psy4557 859 PF-------AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEIS 931 (958)
Q Consensus 859 ~~-------~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia 931 (958)
.. .+..+|++||+|+.+|+++|+.|++++||+||+|+||+|+|+|.... ...+||+.+
T Consensus 158 ~~~~~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~~---------------~~~~~e~~a 222 (250)
T d1yo6a1 158 TDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKN---------------AALTVEQST 222 (250)
T ss_dssp TTCCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC----------------------------HHHH
T ss_pred cCCcccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCCC---------------CCCCHHHHH
Confidence 32 33457999999999999999999999999999999999999986421 135789999
Q ss_pred HHHHHHhcCCCCccccceEec
Q psy4557 932 QSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 932 ~~i~~~l~~~~~~~i~~~~i~ 952 (958)
..++..+.++.. ..+|.+.+
T Consensus 223 ~~~~~~~~~~~~-~~sG~f~~ 242 (250)
T d1yo6a1 223 AELISSFNKLDN-SHNGRFFM 242 (250)
T ss_dssp HHHHHHHTTCCG-GGTTCEEE
T ss_pred HHHHHHHhcCCC-CCCeEEEC
Confidence 999988876543 34555544
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=4.8e-34 Score=310.00 Aligned_cols=232 Identities=20% Similarity=0.229 Sum_probs=185.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC-hhhHHHHHHHhhcC-CCcEEEE-----------------EecCCCH
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR-IDRLENLKTSLQNA-PGSIIVK-----------------KLDVTIE 777 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~-~~~l~~~~~~l~~~-~~~~~~~-----------------~~Dvs~~ 777 (958)
.|+|||||++|||+++|++|+++|++|++++|+ .+.++++.+++... +.....+ .+|++++
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~ 82 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF 82 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCH
Confidence 489999999999999999999999999998765 56677888777543 2334443 4569999
Q ss_pred HHHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHh--
Q psy4557 778 NDVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWN--------------AMINVNIKGVLHCIGNILPSMLH-- 841 (958)
Q Consensus 778 ~~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~--------------~~~~vN~~g~~~~~~~~l~~m~~-- 841 (958)
++++++++++.++||+||+||||||+....++.+.+.++|+ .++++|+.++++++|.+.+.+..
T Consensus 83 ~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 162 (284)
T d1e7wa_ 83 TRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTP 162 (284)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhH
Confidence 99999999999999999999999999887777777766654 47999999999999999887642
Q ss_pred ---CCCCcEEEEecCccCcCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhcc
Q psy4557 842 ---SRRPGHILNISSNAGVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDI 918 (958)
Q Consensus 842 ---~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~ 918 (958)
....|+||+++|..+..+.+++..|++||+|+.+|+|+||.||+++|||||+|+||++.|.... .++..+.+..
T Consensus 163 ~~~~~~~~~ii~~~s~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~~~---~~~~~~~~~~ 239 (284)
T d1e7wa_ 163 AKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDM---PPAVWEGHRS 239 (284)
T ss_dssp GGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGGGS---CHHHHHHHHT
T ss_pred HHhcCCCCcccccccccccCCccceeeeccccccchhhhHHHHHHhCCccccccccccccccccccC---CHHHHHHHHh
Confidence 3456899999999999999999999999999999999999999999999999999986654321 2222222221
Q ss_pred --ccCCCCCCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 919 --SKAVPVLTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 919 --~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
+...++.+|+|+|.+++|+++ +.+.+++|..|.
T Consensus 240 ~~pl~~R~~~peeiA~~v~fL~S-~~s~~itG~~i~ 274 (284)
T d1e7wa_ 240 KVPLYQRDSSAAEVSDVVIFLCS-SKAKYITGTCVK 274 (284)
T ss_dssp TCTTTTSCBCHHHHHHHHHHHHS-GGGTTCCSCEEE
T ss_pred cCCCCCCCCCHHHHHHHHHHHhC-chhcCccCCeEE
Confidence 123567899999999999764 777899988764
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-33 Score=302.36 Aligned_cols=234 Identities=16% Similarity=0.155 Sum_probs=196.7
Q ss_pred CCCCCEEEEEcCCc--hHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~--GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.|+||++|||||++ |||+++|+.|+++|++|++++|+.+..+.+.+.. ...+....+.+|+++..++...++++.+.
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFA-AQLGSDIVLQCDVAEDASIDTMFAELGKV 80 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHH-HHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-hhcCCcceeecccchHHHHHHHHHHhhhc
Confidence 58999999999998 8999999999999999999999976555554433 33455677889999999999999999999
Q ss_pred cCCccEEEEccccCCCccc-----cCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh
Q psy4557 791 LGHIDILVNNAGVMYFTLM-----EKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~-----~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~ 865 (958)
++++|++||||+......+ .....+.|...+++|+.+.+.+++.+.|.|. +++.||++||.++..+.|++..
T Consensus 81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Ii~iss~~~~~~~~~~~~ 157 (258)
T d1qsga_ 81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN---PGSALLTLSYLGAERAIPNYNV 157 (258)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEE---EEEEEEEEECGGGTSBCTTTTH
T ss_pred ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCcEEEEecchhhccCCCCcHH
Confidence 9999999999998654332 3567788999999999999999999999874 3578999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhh-hhh-ccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVV-DKY-DISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~-~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|++||+|+.+|+|+||.||+++|||||+|+||+|+|+|.......... +.. ...+..++.+|||+|..++|+++ +..
T Consensus 158 Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peeia~~v~fL~s-~~s 236 (258)
T d1qsga_ 158 MGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCS-DLS 236 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTS-GGG
T ss_pred HHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCCCCCCcCHHHHHHHHHHHhC-chh
Confidence 999999999999999999999999999999999999997654332222 111 12234578999999999999664 677
Q ss_pred ccccceEe
Q psy4557 944 SAVNSILI 951 (958)
Q Consensus 944 ~~i~~~~i 951 (958)
.++||..|
T Consensus 237 ~~itG~~i 244 (258)
T d1qsga_ 237 AGISGEVV 244 (258)
T ss_dssp TTCCSCEE
T ss_pred cCccCceE
Confidence 88998655
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.8e-34 Score=301.16 Aligned_cols=215 Identities=13% Similarity=0.085 Sum_probs=179.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc--C
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL--G 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~--g 792 (958)
+||++||||||+|||+++|+.|+++|++|++++++... .......+.+|.++.++++.+...+.+.+ +
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE----------EASASVIVKMTDSFTEQADQVTAEVGKLLGDQ 70 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT----------TSSEEEECCCCSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc----------cccccceeecccCcHHHHHHHHHHHHHHhCCC
Confidence 58999999999999999999999999999999887542 12345567788888899988888887764 4
Q ss_pred CccEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 793 HIDILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 793 ~iDilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+||+||||||.... ..+.+.+.++|++++++|+.+++++++.++|+|. ++|+|||+||.++..+.|++.+|++||+
T Consensus 71 ~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~---~~G~Iv~isS~~~~~~~~~~~~Y~asKa 147 (236)
T d1dhra_ 71 KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLK---EGGLLTLAGAKAALDGTPGMIGYGMAKG 147 (236)
T ss_dssp CEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEE---EEEEEEEECCGGGGSCCTTBHHHHHHHH
T ss_pred CceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcc---cccceeEEccHHHcCCccCCcccHHHHH
Confidence 79999999997544 4456677899999999999999999999999995 3599999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccce
Q psy4557 872 FIEGISGALRQEVS--DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSI 949 (958)
Q Consensus 872 a~~~l~~~la~el~--~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~ 949 (958)
|+++|+|+|+.|++ ++|||||+|+||+|+|+|........ ...++..|+++|+.++|+++ +...+++|.
T Consensus 148 al~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~~~~~~~~--------~~~~~~~pe~va~~~~~l~s-~~~~~i~G~ 218 (236)
T d1dhra_ 148 AVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPEA--------DFSSWTPLEFLVETFHDWIT-GNKRPNSGS 218 (236)
T ss_dssp HHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHSTTS--------CGGGSEEHHHHHHHHHHHHT-TTTCCCTTC
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcchhhCccc--------hhhcCCCHHHHHHHHHHHhC-CCccCCCCC
Confidence 99999999999998 57999999999999999854221110 11235679999999999765 555677776
Q ss_pred Ee
Q psy4557 950 LI 951 (958)
Q Consensus 950 ~i 951 (958)
+|
T Consensus 219 ~i 220 (236)
T d1dhra_ 219 LI 220 (236)
T ss_dssp EE
T ss_pred eE
Confidence 54
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=6.4e-34 Score=315.22 Aligned_cols=234 Identities=14% Similarity=0.150 Sum_probs=184.9
Q ss_pred CCCEEEEEc--CCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC------------CCcEEEEE---------
Q psy4557 715 ANKVIFVTG--SSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA------------PGSIIVKK--------- 771 (958)
Q Consensus 715 ~~k~~lITG--as~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~------------~~~~~~~~--------- 771 (958)
.+|++|||| +++|||+++|++|+++|++|++++++............+. ........
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 479999999 6689999999999999999999998876554443322111 01122233
Q ss_pred -----------ecCCCHHHHHHHHHHHHHHcCCccEEEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4557 772 -----------LDVTIENDVKKVVREVLAELGHIDILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPS 838 (958)
Q Consensus 772 -----------~Dvs~~~~v~~~~~~~~~~~g~iDilInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~ 838 (958)
+|+++.++++++++.+.+.||+||+||||||... .+++.+++.++|++++++|++|++.++|+++|+
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 3667888899999999999999999999999864 357889999999999999999999999999999
Q ss_pred HHhCCCCcEEEEecCccCcCCCCC-ChhhhHHHHHHHHHHHHHHHHhCC-CCcEEEEEECCcccCCCCCCC---------
Q psy4557 839 MLHSRRPGHILNISSNAGVRPFAG-LAVYTGTKYFIEGISGALRQEVSD-RNIKVTCIQAGDVKTELLSHS--------- 907 (958)
Q Consensus 839 m~~~~~~g~IV~isS~~g~~~~~~-~~~Y~asKaa~~~l~~~la~el~~-~gIrv~~v~PG~v~T~~~~~~--------- 907 (958)
|. .+|+||++||.++..+.|+ ...|++||+|+++|+|+||.||++ +|||||+|+||+|+|++...-
T Consensus 161 m~---~~GsIv~iss~~~~~~~p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T~a~~~i~g~~~~~~~ 237 (329)
T d1uh5a_ 161 MK---PQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAINKLNNTYEN 237 (329)
T ss_dssp EE---EEEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCTTGGGCC--------
T ss_pred cc---cccccccceeehhcccccccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccchhhhcccchhhhhhh
Confidence 95 3589999999999999987 467999999999999999999986 699999999999999532110
Q ss_pred --------------------------------CC---hhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 908 --------------------------------TD---RDVVDKY-DISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 908 --------------------------------~~---~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
.. +...+.. ...+..+..+|+|+|.+++|++ ++.+.+++|..|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~~~pedvA~~v~fLa-Sd~s~~iTGq~i 316 (329)
T d1uh5a_ 238 NTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQKLLSTDIGSVASFLL-SRESRAITGQTI 316 (329)
T ss_dssp ----------------------------------CHHHHHHHHHHHHSSSCSCCCHHHHHHHHHHHH-SGGGTTCCSCEE
T ss_pred hhhhhhccccccccccccccccccchhhhhhhcccchHHHHHHHhccCCCCCCcCHHHHHHHHHHHh-CchhCCccCCeE
Confidence 00 0000111 1123457899999999999965 577788998876
Q ss_pred c
Q psy4557 952 E 952 (958)
Q Consensus 952 ~ 952 (958)
.
T Consensus 317 ~ 317 (329)
T d1uh5a_ 317 Y 317 (329)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.2e-32 Score=291.40 Aligned_cols=221 Identities=22% Similarity=0.275 Sum_probs=181.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
+|++||||||+|||+++|++|+++|++|++++|+.+. .+....++|+++...+..+.......+. .+
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~ 67 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG------------EDLIYVEGDVTREEDVRRAVARAQEEAP-LF 67 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS------------SSSEEEECCTTCHHHHHHHHHHHHHHSC-EE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc------------ccceEeeccccchhhhHHHHHhhhcccc-cc
Confidence 5999999999999999999999999999999998642 3456788999999999999988877765 45
Q ss_pred EEEEccccCC----CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----CCCCcEEEEecCccCcCCCCCChhh
Q psy4557 796 ILVNNAGVMY----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLH-----SRRPGHILNISSNAGVRPFAGLAVY 866 (958)
Q Consensus 796 ilInnAG~~~----~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~-----~~~~g~IV~isS~~g~~~~~~~~~Y 866 (958)
.++++++... .......+.+.|++++++|+.+++.+++.+++.+.+ .++.|+|||+||.++..+.++.+.|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~~~Y 147 (241)
T d1uaya_ 68 AVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAY 147 (241)
T ss_dssp EEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTCHHH
T ss_pred chhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCCCchhh
Confidence 5666666542 234456788999999999999999999999998532 3456999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCcc
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSA 945 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~ 945 (958)
++||+|+.+|+|+||.|++++|||||+|+||+|+|+|.............. .+...++.+|+|+|..++|++++ .+
T Consensus 148 ~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~R~g~pedvA~~v~fL~s~---~~ 224 (241)
T d1uaya_ 148 AASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILEN---PM 224 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCSSCSCCCHHHHHHHHHHHHHC---TT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhhhhHHHHHHhcCCCCCCCcCHHHHHHHHHHHHhC---CC
Confidence 999999999999999999999999999999999999876543332222112 12225678999999999998863 46
Q ss_pred ccceEec
Q psy4557 946 VNSILIE 952 (958)
Q Consensus 946 i~~~~i~ 952 (958)
++|..|.
T Consensus 225 iTG~~i~ 231 (241)
T d1uaya_ 225 LNGEVVR 231 (241)
T ss_dssp CCSCEEE
T ss_pred CCCCEEE
Confidence 8877663
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.2e-33 Score=293.86 Aligned_cols=214 Identities=13% Similarity=0.096 Sum_probs=178.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH--HcCCc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA--ELGHI 794 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~--~~g~i 794 (958)
+.||||||++|||+++|++|+++|++|++++|+.+.. ......+.+|+.+.++.....+.+.. .+|+|
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 72 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ----------ADSNILVDGNKNWTEQEQSILEQTASSLQGSQV 72 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT----------SSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc----------ccccceeccccCchhHHHHHHHHHHHHhcCCCe
Confidence 3469999999999999999999999999999986521 12345667888888888877777766 46899
Q ss_pred cEEEEccccCCC-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 795 DILVNNAGVMYF-TLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 795 DilInnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
|+||||||+... .++.+.+.+.|+.++++|++++++++|.++|+|. ++|+|||+||.++..+.|++..|++||+|+
T Consensus 73 D~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~---~~g~Iv~isS~~~~~~~~~~~~Y~asKaal 149 (235)
T d1ooea_ 73 DGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLK---PGGLLQLTGAAAAMGPTPSMIGYGMAKAAV 149 (235)
T ss_dssp EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEE---EEEEEEEECCGGGGSCCTTBHHHHHHHHHH
T ss_pred eEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccc---cceEEEEeccHHhcCCcccccchHHHHHHH
Confidence 999999998654 3455666789999999999999999999999995 248999999999999999999999999999
Q ss_pred HHHHHHHHHHhC--CCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 874 EGISGALRQEVS--DRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 874 ~~l~~~la~el~--~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
.+|+|+|+.|++ +.||+||+|+||+++|+|....... ....++.+|+++++.+++++.++....++|..|
T Consensus 150 ~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~~~~~~~~--------~~~~~~~~~~~va~~~~~~l~~~~~~~~tG~~i 221 (235)
T d1ooea_ 150 HHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWMPN--------ADHSSWTPLSFISEHLLKWTTETSSRPSSGALL 221 (235)
T ss_dssp HHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHHSTT--------CCGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEE
T ss_pred HHHHHHHHHHhccCCCceEEEEEecCcCcCcchhhhCcC--------CccccCCCHHHHHHHHHHHhcCccccCCCceEE
Confidence 999999999998 5799999999999999985422111 011235689999999998888888888888765
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.98 E-value=3.5e-32 Score=293.69 Aligned_cols=234 Identities=18% Similarity=0.219 Sum_probs=183.7
Q ss_pred CCCCCEEEEEcCCc--hHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~--GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.|+||++|||||+| |||+++|++|+++|++|++++|+.+ +++..+++.+.+....+.++|++++++++++++++.+.
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD 80 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH
Confidence 58999999999764 9999999999999999999999954 33344445444556778899999999999999999999
Q ss_pred cCCccEEEEccccCCCcc----ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhh
Q psy4557 791 LGHIDILVNNAGVMYFTL----MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVY 866 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~----~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y 866 (958)
+|++|++|||+|...... ..+...+.+...+.++..+.+.+.+.+.+.+ +..+.|+++||.+...+.++...|
T Consensus 81 ~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~s~~~~~~~~~~~~~y 157 (274)
T d2pd4a1 81 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLL---NNGASVLTLSYLGSTKYMAHYNVM 157 (274)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE---EEEEEEEEEECGGGTSBCTTCHHH
T ss_pred cCCCCeEEeecccccccccccccccccchhhhhhhcccccccccccccccccc---ccCcceeeecccccccccccchhh
Confidence 999999999999875433 2334455555666666655555555444332 334568888888888888999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhh--ccccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKY--DISKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~--~~~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
+++|+|+.+|+|+++.|++++|||||+|+||++.|+|.....+.+..... ......++.+|+|+|..++|+++ +...
T Consensus 158 ~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedIA~~v~fL~S-~~s~ 236 (274)
T d2pd4a1 158 GLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLS-SLSS 236 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHS-GGGT
T ss_pred hHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhhhccCCcCHHHHHHHHHHHhC-hhhC
Confidence 99999999999999999999999999999999999997655432222211 22344578999999999999765 6788
Q ss_pred cccceEe
Q psy4557 945 AVNSILI 951 (958)
Q Consensus 945 ~i~~~~i 951 (958)
++||..|
T Consensus 237 ~itG~~i 243 (274)
T d2pd4a1 237 GVSGEVH 243 (274)
T ss_dssp TCCSCEE
T ss_pred CCcCceE
Confidence 8998765
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.98 E-value=5.1e-32 Score=295.94 Aligned_cols=236 Identities=20% Similarity=0.166 Sum_probs=183.2
Q ss_pred CCCCCCEEEEEcCCc--hHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC---------C---CcEEEEEec----
Q psy4557 712 NTLANKVIFVTGSSS--GIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA---------P---GSIIVKKLD---- 773 (958)
Q Consensus 712 ~~l~~k~~lITGas~--GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~---------~---~~~~~~~~D---- 773 (958)
.+|+||++|||||++ |||+++|++|+++|++|++++|+.+............ . .......+|
T Consensus 4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T d1d7oa_ 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Confidence 578999999999875 9999999999999999999999865433322211110 0 111233333
Q ss_pred ----------------CCCHHHHHHHHHHHHHHcCCccEEEEccccCC--CccccCCCHHHHHHHHHHHhHHHHHHHHHH
Q psy4557 774 ----------------VTIENDVKKVVREVLAELGHIDILVNNAGVMY--FTLMEKYKLEEWNAMINVNIKGVLHCIGNI 835 (958)
Q Consensus 774 ----------------vs~~~~v~~~~~~~~~~~g~iDilInnAG~~~--~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~ 835 (958)
.++..+++++++++.++||+||+||||||... ..++.+.+.++|++++++|+++++.+++++
T Consensus 84 ~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~ 163 (297)
T d1d7oa_ 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHH
Confidence 34556778999999999999999999999854 467889999999999999999999999999
Q ss_pred HHHHHhCCCCcEEEEecCccCc-CCCCCChhhhHHHHHHHHHHHHHHHHhC-CCCcEEEEEECCcccCCCCCCCCChh-h
Q psy4557 836 LPSMLHSRRPGHILNISSNAGV-RPFAGLAVYTGTKYFIEGISGALRQEVS-DRNIKVTCIQAGDVKTELLSHSTDRD-V 912 (958)
Q Consensus 836 l~~m~~~~~~g~IV~isS~~g~-~~~~~~~~Y~asKaa~~~l~~~la~el~-~~gIrv~~v~PG~v~T~~~~~~~~~~-~ 912 (958)
+|.|. .+|.+++++|.++. ...+....|+++|+++.++++.++.|++ ++|||||+|+||+|.|++.......+ .
T Consensus 164 ~~~~~---~~g~~~~~~~~~~~~~~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~ 240 (297)
T d1d7oa_ 164 LPIMN---PGGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTM 240 (297)
T ss_dssp GGGEE---EEEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCCSHHHHH
T ss_pred HHHhh---cCCcceeeeehhhcccccccccceecccccccccccccchhccccceEEecccccccccchhhhhccCCHHH
Confidence 98875 23667777766655 4457788899999999999999999997 58999999999999999976543222 2
Q ss_pred hhhhc-cccCCCCCCHHHHHHHHHHHhcCCCCccccceEe
Q psy4557 913 VDKYD-ISKAVPVLTTKEISQSIIFALLQPSHSAVNSILI 951 (958)
Q Consensus 913 ~~~~~-~~~~~~~~~p~~ia~~i~~~l~~~~~~~i~~~~i 951 (958)
.+... ..+..++.+|+|+|..++|++ ++.+.++||..|
T Consensus 241 ~~~~~~~~PlgR~~~peevA~~v~fL~-S~~a~~itGq~i 279 (297)
T d1d7oa_ 241 IEYSYNNAPIQKTLTADEVGNAAAFLV-SPLASAITGATI 279 (297)
T ss_dssp HHHHHHHSSSCCCBCHHHHHHHHHHHT-SGGGTTCCSCEE
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHh-CchhcCCcCceE
Confidence 22221 223457889999999999965 577889998665
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.97 E-value=3.6e-31 Score=284.24 Aligned_cols=231 Identities=21% Similarity=0.278 Sum_probs=184.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh-HHHHHHHhhcC-CCcEEEEEecC----CCHHHHHHHHHHHHHH
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR-LENLKTSLQNA-PGSIIVKKLDV----TIENDVKKVVREVLAE 790 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~-l~~~~~~l~~~-~~~~~~~~~Dv----s~~~~v~~~~~~~~~~ 790 (958)
.|+||||||+|||+++|++|+++|++|++++|+.++ .+++.+++... +.+....++|+ +.++.++++++++.++
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA 81 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999998654 56677777543 45566666555 3456788888899999
Q ss_pred cCCccEEEEccccCCCcccc-----------CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC----CCCcEEEEecCcc
Q psy4557 791 LGHIDILVNNAGVMYFTLME-----------KYKLEEWNAMINVNIKGVLHCIGNILPSMLHS----RRPGHILNISSNA 855 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~-----------~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~----~~~g~IV~isS~~ 855 (958)
+|+||+||||||+.....+. +...+.|...+.+|+.+++.+.+...+.+... ...+.+++++|..
T Consensus 82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (266)
T d1mxha_ 82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM 161 (266)
T ss_dssp HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence 99999999999987654332 23356688899999999999999888877432 2357999999999
Q ss_pred CcCCCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccc-cC-CCCCCHHHHHHH
Q psy4557 856 GVRPFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDIS-KA-VPVLTTKEISQS 933 (958)
Q Consensus 856 g~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~-~~-~~~~~p~~ia~~ 933 (958)
+..+.|++..|++||+|+++|+|+||.|++++|||||+|+||+|+|++... ++..+.+... +. .+..+|||+|.+
T Consensus 162 ~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~---~~~~~~~~~~~pl~r~~~~peeva~~ 238 (266)
T d1mxha_ 162 TDLPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP---QETQEEYRRKVPLGQSEASAAQIADA 238 (266)
T ss_dssp GGSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC---HHHHHHHHTTCTTTSCCBCHHHHHHH
T ss_pred ccccCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC---HHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999997543 2222222221 12 234799999999
Q ss_pred HHHHhcCCCCccccceEe
Q psy4557 934 IIFALLQPSHSAVNSILI 951 (958)
Q Consensus 934 i~~~l~~~~~~~i~~~~i 951 (958)
++|+++ +.+.++||..|
T Consensus 239 v~fL~s-~~s~~itG~~i 255 (266)
T d1mxha_ 239 IAFLVS-KDAGYITGTTL 255 (266)
T ss_dssp HHHHHS-GGGTTCCSCEE
T ss_pred HHHHhC-chhCCccCCeE
Confidence 999665 66778888765
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.97 E-value=1.8e-30 Score=279.09 Aligned_cols=234 Identities=18% Similarity=0.190 Sum_probs=186.4
Q ss_pred CCCCCCEEEEEc--CCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTG--SSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 712 ~~l~~k~~lITG--as~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
..|+||++|||| |++|||+++|++|+++|++|++++|+.+++.+... ...+.+...++||+++++++.++++.+.+
T Consensus 2 ~~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~--~~~~~~~~~~~~dv~~~~~~~~~~~~v~~ 79 (268)
T d2h7ma1 2 GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRIT--DRLPAKAPLLELDVQNEEHLASLAGRVTE 79 (268)
T ss_dssp CTTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHH--TTSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHH--HHcCCceeeEeeecccccccccccchhhh
Confidence 468999999999 46899999999999999999999999876543222 22345667889999999999999999877
Q ss_pred H---cCCccEEEEccccCC-----CccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCC
Q psy4557 790 E---LGHIDILVNNAGVMY-----FTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFA 861 (958)
Q Consensus 790 ~---~g~iDilInnAG~~~-----~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~ 861 (958)
. ++++|++|||||+.. ..++.+.+.++|.+.+++|+.+.+...+.+.+.+. ++.+++++|..+..+.|
T Consensus 80 ~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~s~~~~~~~p 155 (268)
T d2h7ma1 80 AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMN----PGGSIVGMDFDPSRAMP 155 (268)
T ss_dssp HHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE----EEEEEEEEECCCSSCCT
T ss_pred ccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcc----cccccccccccccccCc
Confidence 5 467999999999763 23466788999999999999999999988876542 34566677777888899
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCC----CCChhhhh-------hhc--cccCCCCCCHH
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSH----STDRDVVD-------KYD--ISKAVPVLTTK 928 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~----~~~~~~~~-------~~~--~~~~~~~~~p~ 928 (958)
++..|+++|+|+.+|+|+++.|++++|||||+|+||+|+|++... ........ ... .+...++.+|+
T Consensus 156 ~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rr~~~p~ 235 (268)
T d2h7ma1 156 AYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDAT 235 (268)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCH
T ss_pred ccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcCCCCCCCCCHH
Confidence 999999999999999999999999999999999999999997532 11111111 111 11123478999
Q ss_pred HHHHHHHHHhcCCCCccccceEec
Q psy4557 929 EISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 929 ~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
|+|..++|++ ++...+++|..|.
T Consensus 236 dva~~v~fL~-Sd~a~~iTG~~i~ 258 (268)
T d2h7ma1 236 PVAKTVCALL-SDWLPATTGDIIY 258 (268)
T ss_dssp HHHHHHHHHH-SSSCTTCCSEEEE
T ss_pred HHHHHHHHHh-CchhcCccCCEEE
Confidence 9999999976 5777889988763
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.8e-28 Score=273.14 Aligned_cols=253 Identities=14% Similarity=0.103 Sum_probs=177.7
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+.|||||||||||+||+++|++. +.+|++++|..+.. ...|+...... .....++++++.|||+ +
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~-g~~V~~~~r~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~Dl~-------d 66 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRASSF-NTERVDHIYQD------PHTCNPKFHLHYGDLS-------D 66 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEECC----------------------------CCEEECCCCSS-------C
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-cCEEEEEECCCccc-chhhHHHHHhh------hhhcCCCeEEEEeecC-------C
Confidence 57899999999999999999987 57999999964321 12233221111 0122468999999987 3
Q ss_pred HHHHHHHhc--ccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCC---ccEEEEecccccCCCC-CCCcc
Q psy4557 400 QDEYVSLSY--EIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKI---KSFHYVSTDSIYPSTS-ENFQE 470 (958)
Q Consensus 400 ~~~~~~l~~--~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~---k~~~~vST~~v~~~~~-~~~~e 470 (958)
.+.+..+.. ++|+|||+||..+... ......++|+.||.|||+.|+..++ ++|+|+||.+|||... .++.|
T Consensus 67 ~~~~~~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E 146 (357)
T d1db3a_ 67 TSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKE 146 (357)
T ss_dssp HHHHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCT
T ss_pred HHHHHHHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCC
Confidence 466666665 4599999999876543 3445778999999999999987544 4699999999998643 23333
Q ss_pred cccccCcCCCCCCCCChhHHHHHHHHHHHHHhh-CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc----C
Q psy4557 471 DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ-MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA----P 545 (958)
Q Consensus 471 ~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~-~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~----P 545 (958)
+ ++..|.+.|+.||+.+|++++.+.+ .|++++++||++|||+..... -....+...+.....-+.. .
T Consensus 147 ~-------~~~~P~~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~-~~~~~i~~~~~~~~~~~~~~~~~g 218 (357)
T d1db3a_ 147 T-------TPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGET-FVTRKITRAIANIAQGLESCLYLG 218 (357)
T ss_dssp T-------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTT-SHHHHHHHHHHHHHTTSCCCEEES
T ss_pred C-------CCCCCCChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcC-CCchHHHHHHHHHHhCCCceEEEC
Confidence 3 2335678999999999999988654 599999999999999964322 2222333444333322211 1
Q ss_pred CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 546 DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 546 ~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
+.....||++||++++++..++... .+++||++++.++++.++.+.+...
T Consensus 219 ~~~~~r~~~~v~D~~~a~~~~~~~~--~~~~yni~sg~~~s~~~~~~~~~~~ 268 (357)
T d1db3a_ 219 NMDSLRDWGHAKDYVKMQWMMLQQE--QPEDFVIATGVQYSVRQFVEMAAAQ 268 (357)
T ss_dssp CTTCEECCEEHHHHHHHHHHTTSSS--SCCCEEECCCCCEEHHHHHHHHHHT
T ss_pred CCCeeecceeechHHHHHHHHHhCC--CCCeEEECCCCceehHHHHHHHHHH
Confidence 2345679999999999999887653 4679999999999999999988764
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.95 E-value=7.4e-28 Score=256.89 Aligned_cols=210 Identities=21% Similarity=0.268 Sum_probs=154.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH-cCCcc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE-LGHID 795 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~-~g~iD 795 (958)
|++|||||++|||+++|++|+++|++|++++|+.+. ..+|+++.+..+....++..+ .+++|
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~-----------------~~~d~~~~~~~~~~~~~~~~~~~~~id 64 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-----------------VIADLSTAEGRKQAIADVLAKCSKGMD 64 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS-----------------EECCTTSHHHHHHHHHHHHTTCTTCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH-----------------HHHHhcCHHHHHHHHHHHHHHhCCCCc
Confidence 799999999999999999999999999999997531 246999999988877666554 46799
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccC-------------------
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAG------------------- 856 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g------------------- 856 (958)
++|||||+... .+.|.+..++|..+...+.+..++.+.+. ..+.+.++++...
T Consensus 65 ~lv~~Ag~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 136 (257)
T d1fjha_ 65 GLVLCAGLGPQ-------TKVLGNVVSVNYFGATELMDAFLPALKKG-HQPAAVVISSVASAHLAFDKNPLALALEAGEE 136 (257)
T ss_dssp EEEECCCCCTT-------CSSHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECCGGGGSSCGGGCTTHHHHHHTCH
T ss_pred EEEEcCCCCCc-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhh-ccCcceeeeeccccchhhhhhhhhhhccCCcE
Confidence 99999997532 24578899999999999999999988643 3456666555432
Q ss_pred --------cCC-CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh-hhhhhhc--cccCCCC
Q psy4557 857 --------VRP-FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR-DVVDKYD--ISKAVPV 924 (958)
Q Consensus 857 --------~~~-~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~-~~~~~~~--~~~~~~~ 924 (958)
..+ .++...|++||+|+.+|+|+||.||+++|||||+|+||+|+|+|....... ...+... ..+..++
T Consensus 137 ~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~PlgR~ 216 (257)
T d1fjha_ 137 AKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGRR 216 (257)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------CCCSTTSC
T ss_pred EEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHHHHHhcCCCCCCC
Confidence 222 223457999999999999999999999999999999999999997653222 1111111 1234578
Q ss_pred CCHHHHHHHHHHHhcCCCCccccceEec
Q psy4557 925 LTTKEISQSIIFALLQPSHSAVNSILIE 952 (958)
Q Consensus 925 ~~p~~ia~~i~~~l~~~~~~~i~~~~i~ 952 (958)
.+|+|+|..++|++ ++.+.++||..|.
T Consensus 217 g~p~eva~~v~fL~-S~~s~~itG~~i~ 243 (257)
T d1fjha_ 217 AEPSEMASVIAFLM-SPAASYVHGAQIV 243 (257)
T ss_dssp CCTHHHHHHHHHHT-SGGGTTCCSCEEE
T ss_pred cCHHHHHHHHHHHh-CchhCCccCceEE
Confidence 89999999999965 5777899997763
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.95 E-value=1.3e-27 Score=255.36 Aligned_cols=215 Identities=17% Similarity=0.186 Sum_probs=174.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecCh---hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRI---DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~---~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.++++|||||++|||+++|++|+++|+ +|++++|+. +.++++.+++...+.++.++.||++|.++++++++.+.+
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~- 86 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD- 86 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT-
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccc-
Confidence 568999999999999999999999999 588899974 457777778877788899999999999999999998765
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
.+++|++|||||+....++.+.+.++|++++++|+.|++++.+.+ . ....|+||++||+++..+.++++.|+++|
T Consensus 87 ~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~----~-~~~~~~iv~~SS~a~~~g~~~~~~YaAak 161 (259)
T d2fr1a1 87 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELT----R-ELDLTAFVLFSSFASAFGAPGLGGYAPGN 161 (259)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHH----T-TSCCSEEEEEEEHHHHTCCTTCTTTHHHH
T ss_pred cccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHh----h-ccCCceEeeecchhhccCCcccHHHHHHH
Confidence 468999999999999999999999999999999999999877643 3 34568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+++++|++.++ ..|++|++|+||.+.++........ +.. ...+...++|+++++.+..++.++..
T Consensus 162 a~l~~la~~~~----~~Gi~v~~I~pg~~~~~g~~~~~~~---~~~-~~~G~~~~~~~~~~~~l~~~l~~~~~ 226 (259)
T d2fr1a1 162 AYLDGLAQQRR----SDGLPATAVAWGTWAGSGMAEGPVA---DRF-RRHGVIEMPPETACRALQNALDRAEV 226 (259)
T ss_dssp HHHHHHHHHHH----HTTCCCEEEEECCBC---------------C-TTTTEECBCHHHHHHHHHHHHHTTCS
T ss_pred HhHHHHHHHHH----hCCCCEEECCCCcccCCccccchHH---HHH-HhcCCCCCCHHHHHHHHHHHHhCCCc
Confidence 99998877665 4599999999999876533221111 111 11223457899999999998876653
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.94 E-value=1.5e-26 Score=259.35 Aligned_cols=252 Identities=22% Similarity=0.246 Sum_probs=180.8
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||+||+++|++++...|+|+.+...... .+++.. ..-.++++++.+|++. .
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~-~~~~~~-----------~~~~~~~~~~~~Dl~d-------~ 62 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN-LESLSD-----------ISESNRYNFEHADICD-------S 62 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC-GGGGTT-----------TTTCTTEEEEECCTTC-------H
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcccc-HHHHHh-----------hhhcCCcEEEEccCCC-------H
Confidence 69999999999999999999887656777665432211 111110 0113689999999873 4
Q ss_pred HHHHHHhc--ccCEEEEcccccCcccC---hHHHHhhhHHHHHHHHHhhccC---------CCccEEEEecccccCCCCC
Q psy4557 401 DEYVSLSY--EIDMIIHAAAFVNLILP---YNALYKSNVLATKNLIEFSFLN---------KIKSFHYVSTDSIYPSTSE 466 (958)
Q Consensus 401 ~~~~~l~~--~vd~IiH~AA~v~~~~~---~~~~~~~NV~gt~~ll~~a~~~---------~~k~~~~vST~~v~~~~~~ 466 (958)
..+..+.. ++|+|||+||..+...+ .....++|+.||.+++++|.+. +.++|+|+||..|||....
T Consensus 63 ~~l~~~~~~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~ 142 (361)
T d1kewa_ 63 AEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPH 142 (361)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCC
T ss_pred HHHHHHHHhCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCcc
Confidence 55555543 68999999998654322 2456789999999999999754 3458999999999986543
Q ss_pred CCc-c---cccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh
Q psy4557 467 NFQ-E---DYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL 541 (958)
Q Consensus 467 ~~~-e---~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~ 541 (958)
... + ..+......+..|.+.|+.||.++|+++..+. +.|++++++||++|||+.... ..++..+++.+..-
T Consensus 143 ~~~~~~~~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~----~~~i~~~i~~~~~g 218 (361)
T d1kewa_ 143 PDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP----EKLIPLVILNALEG 218 (361)
T ss_dssp GGGSCTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT----TSHHHHHHHHHHHT
T ss_pred CCccccccCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCc----CcHHHHHHHHHHcC
Confidence 211 1 11112223344677889999999999998865 459999999999999986432 23566666666553
Q ss_pred CCcC---CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 542 GYAP---DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 542 g~~P---~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
+-+. +.+..++|++|+++|+++..+..+.. .+.+||+.+++++++.++++.+..
T Consensus 219 ~~~~v~g~g~~~r~~i~v~D~a~ai~~~~~~~~-~~~~~Ni~s~~~~s~~~~~~~i~~ 275 (361)
T d1kewa_ 219 KPLPIYGKGDQIRDWLYVEDHARALHMVVTEGK-AGETYNIGGHNEKKNLDVVFTICD 275 (361)
T ss_dssp CCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-TTCEEEECCCCEEEHHHHHHHHHH
T ss_pred CCcEEeCCCCeEEeCEEHHHHHHHHHHHHhcCC-CCCeEEECCCCCcchHHHHhHhhh
Confidence 3221 33456899999999999999886653 467999999999999999888764
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=9e-26 Score=250.83 Aligned_cols=256 Identities=18% Similarity=0.170 Sum_probs=190.3
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCCh-hhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPN-KTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~-~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
++++|||||||||+|+||+++|++. +.+|++++|..+. .....++..... .....++.++.+|+.
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~----- 80 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDNFATGHQRNLDEVRSLVS--------EKQWSNFKFIQGDIR----- 80 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHHSC--------HHHHTTEEEEECCTT-----
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC-cCEEEEEECCCCcchhhHHHHHHhhh--------hcccCCeeEEeeccc-----
Confidence 4678999999999999999999976 4689999875432 222333322111 111357889999986
Q ss_pred CCcHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcccc
Q psy4557 397 LKNQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDY 472 (958)
Q Consensus 397 L~~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~ 472 (958)
+..........++.|+|+||..... ........+|+.||.+|+++|...++++|+|+||.+|||.... +..|+
T Consensus 81 --d~~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~- 157 (341)
T d1sb8a_ 81 --NLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED- 157 (341)
T ss_dssp --SHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-
T ss_pred --cccccccccccccccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCC-
Confidence 3456667778899999999976543 2334567899999999999999999999999999999986533 23332
Q ss_pred cccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc---CCCC
Q psy4557 473 TVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA---PDID 548 (958)
Q Consensus 473 ~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~---P~~~ 548 (958)
.+..|.+.|+.||+.+|+++..+. +.|++++|+||++|||+...+......++..+++....-..+ .+..
T Consensus 158 ------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~ 231 (341)
T d1sb8a_ 158 ------TIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGE 231 (341)
T ss_dssp ------CCCCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSC
T ss_pred ------CCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCC
Confidence 233567899999999999998755 459999999999999998765444334555555554442222 2334
Q ss_pred CcCCcccHHHHHHHHHHHhcCc-CCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 549 WYLEFTPVDFLTKSLVQLTTNV-NNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 549 ~~~~~~pVD~va~aiv~l~~~~-~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
...+|++||+++.++..+.... ...+.+||+.+...+++.++.+.+.+
T Consensus 232 ~~r~~i~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~ 280 (341)
T d1sb8a_ 232 TSRDFCYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRD 280 (341)
T ss_dssp CEECCEEHHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHH
T ss_pred EEEEEEEEeccchhhhhhhhccccccceeeeecccccchHHHHHHHHHH
Confidence 5689999999999998876543 34578999999999999999988865
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=6.1e-26 Score=252.23 Aligned_cols=253 Identities=17% Similarity=0.165 Sum_probs=183.4
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||+||+++|++++..+|+++.+...... ++ .-..+++++.||++.. +
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~---~~--------------~~~~~~~~i~~Di~~~-----~- 58 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS---RF--------------LNHPHFHFVEGDISIH-----S- 58 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG---GG--------------TTCTTEEEEECCTTTC-----S-
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchh---hh--------------ccCCCeEEEECccCCh-----H-
Confidence 59999999999999999999888789999987543210 10 0136899999998742 1
Q ss_pred HHHHHHhcccCEEEEcccccCcccC---hHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCC-CcccccccC
Q psy4557 401 DEYVSLSYEIDMIIHAAAFVNLILP---YNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDYTVAD 476 (958)
Q Consensus 401 ~~~~~l~~~vd~IiH~AA~v~~~~~---~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~-~~e~~~~~~ 476 (958)
+..+.....+|+|||+||.++.... .......||.||.+++++|.+.+. +++|+||..+|+..... ..+......
T Consensus 59 ~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~~~~~~~~~~~~~~~~~ 137 (342)
T d2blla1 59 EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDKYFDEDHSNLI 137 (342)
T ss_dssp HHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGGBTCCCSSBCTTTCCCB
T ss_pred HHHHHHHhCCCccccccccccccccccCCccccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 2333456689999999998765333 235678999999999999998874 66789999999865432 222222222
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCc----ChhHHHHHHHHHHHHhCCc---CCCC
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNW----NLVDLNLYILKAITRLGYA---PDID 548 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~----n~~d~~~~l~~~~~~~g~~---P~~~ 548 (958)
..+...+.+.|+.||.++|+++.... +.|++++|+|++.++|+...+.. .....+..+++....-+.+ .+..
T Consensus 138 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 217 (342)
T d2blla1 138 VGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGK 217 (342)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSC
T ss_pred ccccCCCcchhhhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCC
Confidence 22333456789999999999998765 45999999999999998754432 2334455555555443322 2334
Q ss_pred CcCCcccHHHHHHHHHHHhcCc--CCCCceEEecCCC-CCCHHHHHHHHHHc
Q psy4557 549 WYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFINTN-PIHIKTLVSVLNTY 597 (958)
Q Consensus 549 ~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n~~-~~~~~~l~~~l~~~ 597 (958)
..++|++|+++|+++..+.... ...+++||++++. ++++.++.+.+.+.
T Consensus 218 ~~r~~i~v~D~~~a~~~~~~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~ 269 (342)
T d2blla1 218 QKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLAS 269 (342)
T ss_dssp CEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHH
T ss_pred eeeeecccccccceeeeehhhccccCCCeEEEEecccchhHHHHHHHHHHHH
Confidence 6789999999999999998653 4467899998764 57999999887653
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.94 E-value=4.2e-25 Score=243.37 Aligned_cols=297 Identities=20% Similarity=0.216 Sum_probs=208.1
Q ss_pred ceEEeccccchHHHHHHHHhcCCC-----CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTK-----CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~-----~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
+|||||||||||+||+++|++++. .+|+++.+...... ..++ . ......++.++.+|++.
T Consensus 2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~-~~~~---------~--~~~~~~~~~~~~~d~~~--- 66 (322)
T d1r6da_ 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN-RANL---------A--PVDADPRLRFVHGDIRD--- 66 (322)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC-GGGG---------G--GGTTCTTEEEEECCTTC---
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCcccc-HhHh---------h--hhhcCCCeEEEEecccc---
Confidence 699999999999999999998642 24555543321110 0000 0 01124689999999863
Q ss_pred CCCcHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccc
Q psy4557 396 GLKNQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQED 471 (958)
Q Consensus 396 GL~~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~ 471 (958)
..........+|.|+|+|+..... ..+.....+|+.||.+|++.|.+.++++|+|+||.++||.... ++.|+
T Consensus 67 ----~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~ 142 (322)
T d1r6da_ 67 ----AGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES 142 (322)
T ss_dssp ----HHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT
T ss_pred ----chhhhccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCC
Confidence 355666778899999999876443 3455667899999999999999999999999999999986533 23332
Q ss_pred ccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---CC
Q psy4557 472 YTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---DI 547 (958)
Q Consensus 472 ~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~~ 547 (958)
.+..+.+.|+.||..+|.+++... +.|++++++||++|||+.+.+. .++..+++.+..-+.++ +.
T Consensus 143 -------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~----~~i~~~i~~~~~~~~i~v~~~g 211 (322)
T d1r6da_ 143 -------SPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE----KLIPLFVTNLLDGGTLPLYGDG 211 (322)
T ss_dssp -------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT----SHHHHHHHHHHTTCCEEEETTS
T ss_pred -------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcC----cHHHHHHHHHHcCCCcEEecCC
Confidence 233567899999999999998865 5599999999999999865322 35667777666544332 33
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH-cCCCccccChHHHHHHHhccCCCchhHHHH
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT-YGYNIKTVPYEKWFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~~~~~v~~~eW~~~~~~~~~~~~~~~~~ 626 (958)
....+|++||++|+++..++.+.. .+.+||+.++.++++.++++.+.+ .|.++..+... ....
T Consensus 212 ~~~r~~i~v~D~a~ai~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~------~~~~--------- 275 (322)
T d1r6da_ 212 ANVREWVHTDDHCRGIALVLAGGR-AGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKV------ADRK--------- 275 (322)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCC-TTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEE------CCCT---------
T ss_pred CeEEccEEHHHHHHHHHHHHhCCC-CCCeeEEeecccchhHHHHHHHHHHhCCCccceeec------CCCC---------
Confidence 466899999999999999887654 478999999999999999997765 35543322100 0000
Q ss_pred hhccccccccCcccccHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHHH
Q psy4557 627 RNKGKEYLTVNNSYCQRNTLALLKSCDETYPETN-DHTVRQFLDNLRN 673 (958)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~-~~~~~~~~~~~~~ 673 (958)
.......+|+++.++.| |.. |..+ ++-|+++++|+.+
T Consensus 276 ------~~~~~~~~d~~k~~~~l---g~~-p~~~~eegI~~~i~w~~~ 313 (322)
T d1r6da_ 276 ------GHDLRYSLDGGKIEREL---GYR-PQVSFADGLARTVRWYRE 313 (322)
T ss_dssp ------TCCCBCCBCCHHHHHHH---CCC-CCSCHHHHHHHHHHHHHH
T ss_pred ------CCCceeeeCHHHHHHHH---CCC-CCCCHHHHHHHHHHHHHH
Confidence 00112346777776666 654 3333 4568899998764
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=3.9e-25 Score=245.42 Aligned_cols=301 Identities=19% Similarity=0.165 Sum_probs=203.9
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChh-hHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNK-TLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~-~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+|||||||||||+||++.|++++ .+|+.++|-.... .....+... ..+++.++.+|++ +
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~------------~~~~~~~~~~Dl~-------d 61 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERL------------GGKHPTFVEGDIR-------N 61 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHHHHHHH------------HTSCCEEEECCTT-------C
T ss_pred EEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHhh------------cCCCCEEEEeecC-------C
Confidence 59999999999999999999874 7888887743322 222222111 1257899999986 3
Q ss_pred HHHHHHHhc--ccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccc
Q psy4557 400 QDEYVSLSY--EIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTV 474 (958)
Q Consensus 400 ~~~~~~l~~--~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~ 474 (958)
.+.+..+.+ ++|+|||+||...... ....+..+||.||++||+.|+..++++|+|+||.+||+........+
T Consensus 62 ~~~l~~~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e--- 138 (338)
T d1udca_ 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVE--- 138 (338)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCT---
T ss_pred HHHHHHHHhccCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccccccccc---
Confidence 456666654 7999999999765332 33467889999999999999999999999999999997654322211
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHH-Hhh-CCCCEEEEecCceeccCCCCCc-----C-hhHHHHHHHHHHHHhCCc--
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLN-AGQ-MGLPVSIVRCGNIGGSLEFKNW-----N-LVDLNLYILKAITRLGYA-- 544 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~-a~~-~glp~~I~R~g~i~G~~~~g~~-----n-~~d~~~~l~~~~~~~g~~-- 544 (958)
..+...+.+.|+.||..+|+++.. +.+ .+++++|+|++++||+...+.. . ...++..+++.+...+..
T Consensus 139 --~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 216 (338)
T d1udca_ 139 --SFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLA 216 (338)
T ss_dssp --TSCCCCCSSHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEE
T ss_pred --ccccCCCcchHHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEE
Confidence 112235678999999999999875 433 4899999999999998765332 1 123444555444322110
Q ss_pred --------CCCCCcCCcccHHHHHHHHHHHhcC--cCCCCceEEecCCCCCCHHHHHHHHHHc-CCCcc--ccChHHHHH
Q psy4557 545 --------PDIDWYLEFTPVDFLTKSLVQLTTN--VNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIK--TVPYEKWFH 611 (958)
Q Consensus 545 --------P~~~~~~~~~pVD~va~aiv~l~~~--~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~--~v~~~eW~~ 611 (958)
.+.....||++|++++.++..+... ....+++||+.++.++++.++++.+.+. |.+++ .++.
T Consensus 217 i~g~~~~~~~g~~~rd~i~v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~----- 291 (338)
T d1udca_ 217 IFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR----- 291 (338)
T ss_dssp EECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECC-----
T ss_pred EeCCCcccCCCCceeeEEEEeehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCC-----
Confidence 1223457899999999888776542 3334679999999999999999988653 53322 1110
Q ss_pred HHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHHHC
Q psy4557 612 KLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETN-DHTVRQFLDNLRNS 674 (958)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~-~~~~~~~~~~~~~~ 674 (958)
+.. . ......|+++.++.| |.+. ..+ ++-|+++++|..+-
T Consensus 292 ----~~~-----------~----~~~~~~d~~k~~~~l---gwkp-~~~l~egi~~ti~w~~~~ 332 (338)
T d1udca_ 292 ----REG-----------D----LPAYWADASKADREL---NWRV-TRTLDEMAQDTWHWQSRH 332 (338)
T ss_dssp ----CTT-----------C----CSBCCBCCHHHHHHH---CCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ----CCC-----------C----CCEeeECHHHHHHHH---CCCc-CCCHHHHHHHHHHHHHhc
Confidence 000 0 011235788777655 5432 333 45799999988764
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=5.1e-25 Score=246.81 Aligned_cols=300 Identities=14% Similarity=0.096 Sum_probs=205.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+..+|||||||||||+||+++|++++ ..|+++.|...... ........+..+|+.
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g-~~V~~~d~~~~~~~------------------~~~~~~~~~~~~D~~------ 68 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHM------------------TEDMFCDEFHLVDLR------ 68 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSSS------------------CGGGTCSEEEECCTT------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCCccch------------------hhhcccCcEEEeech------
Confidence 34579999999999999999999864 68888876544210 111234566777865
Q ss_pred CcHHHHHHHhcccCEEEEcccccCc----ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCC-Ccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNL----ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDY 472 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~----~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~-~~e~~ 472 (958)
+.+.+..+.+++|+|||+|+.... ..........|+.||.+|+++|+..++++|+|+||..+|+..... ..+..
T Consensus 69 -~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~ 147 (363)
T d2c5aa1 69 -VMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVS 147 (363)
T ss_dssp -SHHHHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCE
T ss_pred -hHHHHHHHhhcCCeEeecccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccc
Confidence 346677778899999999987655 344556778999999999999999999999999999999854322 22221
Q ss_pred cccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCC-cC---CC
Q psy4557 473 TVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGY-AP---DI 547 (958)
Q Consensus 473 ~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~-~P---~~ 547 (958)
.......+..+.+.|+.||+.+|++++... +.|++++++||+++||+......................+. .+ +.
T Consensus 148 ~~~~e~~~~~p~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g 227 (363)
T d2c5aa1 148 LKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDG 227 (363)
T ss_dssp ECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCS
T ss_pred cccccCCcCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCC
Confidence 111222334567899999999999998765 45999999999999998765443322222222222222221 11 22
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHHHH
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~~~ 626 (958)
....+|++|+++++++..+..+. .+.+||++.+..+++.++++.+.+. |.+.+... .....
T Consensus 228 ~~~rd~i~v~D~~~~~~~~~~~~--~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~-------~~~~~--------- 289 (363)
T d2c5aa1 228 LQTRSFTFIDECVEGVLRLTKSD--FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHH-------IPGPE--------- 289 (363)
T ss_dssp CCEECCEEHHHHHHHHHHHHHSS--CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEE-------ECCCC---------
T ss_pred CeEEEEeehhHHHHHHHHHHhCC--CCCeEEEecCCcccHHHHHHHHHHHhCCCCceEe-------CCCCC---------
Confidence 34689999999999999887654 4679999999999999999998764 43322110 00000
Q ss_pred hhccccccccCcccccHHHHHHHhhCCCCCCCCCH-HHHHHHHHHHH
Q psy4557 627 RNKGKEYLTVNNSYCQRNTLALLKSCDETYPETND-HTVRQFLDNLR 672 (958)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~-~~~~~~~~~~~ 672 (958)
. ......|++++++.| |..+ .++- +-|+++++||.
T Consensus 290 --~-----~~~~~~d~ska~~~L---Gw~p-~~sleegi~~ti~w~~ 325 (363)
T d2c5aa1 290 --G-----VRGRNSDNNLIKEKL---GWAP-NMRLKEGLRITYFWIK 325 (363)
T ss_dssp --C-----CSBCEECCHHHHHHH---SCCC-CCCHHHHHHHHHHHHH
T ss_pred --C-----ccccccCHHHHHHHh---CCCC-CCCHHHHHHHHHHHHH
Confidence 0 011235788877776 5543 3333 56888888774
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.6e-26 Score=252.05 Aligned_cols=248 Identities=20% Similarity=0.194 Sum_probs=178.1
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||+|+||+++|+++ +.+|+++.|...... +.+. .+ .-..++.+..+|+...
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~-g~~V~~~d~~~~~~~--~~~~----~~-------~~~~~~d~~~~~~~~~------ 61 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMD-GHEVTVVDNFFTGRK--RNVE----HW-------IGHENFELINHDVVEP------ 61 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCG--GGTG----GG-------TTCTTEEEEECCTTSC------
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCCcCCH--HHHH----Hh-------cCCCceEEEehHHHHH------
Confidence 68999999999999999999986 578988876432210 0010 00 0123556666665321
Q ss_pred HHHHHHHhcccCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCccccccc
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYTVA 475 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~~~ 475 (958)
+..++|+|||+||.++. ........++||.||.+|+++|+..++ +|+|+||.+|||.... +..|+. .
T Consensus 62 ------~~~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e~~--~ 132 (312)
T d2b69a1 62 ------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDY--W 132 (312)
T ss_dssp ------CCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTC--C
T ss_pred ------HHcCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCCCCCCccc--c
Confidence 22469999999998764 234456678999999999999988774 7999999999986532 233322 1
Q ss_pred CcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---CCCCcC
Q psy4557 476 DFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP---DIDWYL 551 (958)
Q Consensus 476 ~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P---~~~~~~ 551 (958)
....+..|.+.|+.||.++|.+++... +.|++++++||++|||+...+.. ..++..+++.+..-..++ +.....
T Consensus 133 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~--~~~i~~~i~~~~~g~~i~i~~~g~~~r 210 (312)
T d2b69a1 133 GHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMND--GRVVSNFILQALQGEPLTVYGSGSQTR 210 (312)
T ss_dssp CBCCSSSTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTC--CCHHHHHHHHHHHTCCEEEESSSCCEE
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCC--ccHHHHHHHHHHcCCCeEEeCCCCeeE
Confidence 122334567889999999999998754 56999999999999998764432 235666666665533222 334568
Q ss_pred CcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCC
Q psy4557 552 EFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYN 600 (958)
Q Consensus 552 ~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~ 600 (958)
+|++|+++++++..+.... .+.+||+++..++++.++...+.+. |.+
T Consensus 211 ~~i~v~D~~~~~~~~~~~~--~~~~~n~~~~~~~~~~~~~~~i~~~~~~~ 258 (312)
T d2b69a1 211 AFQYVSDLVNGLVALMNSN--VSSPVNLGNPEEHTILEFAQLIKNLVGSG 258 (312)
T ss_dssp ECEEHHHHHHHHHHHHTSS--CCSCEEESCCCEEEHHHHHHHHHHHHTCC
T ss_pred ccEEHHHHHHHHHHHHhhc--cCCceEecCCcccchhhHHHHHHHHhCCC
Confidence 9999999999999887543 4678999999999999999988754 443
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=6.7e-25 Score=244.37 Aligned_cols=307 Identities=16% Similarity=0.131 Sum_probs=200.3
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChh-hHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNK-TLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~-~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
|.|||||||||||+||+++||+++ .+|+++.|..... ....+.... ...+++++.+||..
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g-~~V~~~d~~~~~~~~~~~~~~~~------------~~~~v~~~~~Dl~d------ 62 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVL------------TKHHIPFYEVDLCD------ 62 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHHHHHH------------HTSCCCEEECCTTC------
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CeEEEEECCCCcchhHHHhHHhh------------cccCCeEEEeecCC------
Confidence 469999999999999999999874 7899987644322 111111110 13578889999873
Q ss_pred cHHHHHHHhc--ccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCccccc
Q psy4557 399 NQDEYVSLSY--EIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYT 473 (958)
Q Consensus 399 ~~~~~~~l~~--~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~ 473 (958)
.+.+..+.. ++|+|||+||.+.... ....+..+|+.||.+|++.|++.++++|+|+||..|||.......+ .+
T Consensus 63 -~~~l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~-~~ 140 (347)
T d1z45a2 63 -RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNM-IP 140 (347)
T ss_dssp -HHHHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTC-CS
T ss_pred -HHHHHHHHhccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCC-Cc
Confidence 455665543 7999999999865322 2345678999999999999999999999999999999864321111 11
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh---hCCCCEEEEecCceeccCCCCCcC------hhHHHHHHHHHHHHhCCc
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG---QMGLPVSIVRCGNIGGSLEFKNWN------LVDLNLYILKAITRLGYA 544 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~---~~glp~~I~R~g~i~G~~~~g~~n------~~d~~~~l~~~~~~~g~~ 544 (958)
...+.+..+.+.|+.||+.+|+++..+. ..+++++++|++++||+...+.+. ...++..+++.....+..
T Consensus 141 -~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
T d1z45a2 141 -IPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREK 219 (347)
T ss_dssp -BCTTSCCCCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSC
T ss_pred -cccccCCCCCChhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCC
Confidence 1122334567899999999999998754 358999999999999987654322 123344444433222210
Q ss_pred C----------CCCCcCCcccHHHHHHHHHHHhcC------cCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChH
Q psy4557 545 P----------DIDWYLEFTPVDFLTKSLVQLTTN------VNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYE 607 (958)
Q Consensus 545 P----------~~~~~~~~~pVD~va~aiv~l~~~------~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~ 607 (958)
. +.....|++.+.+++.+++.+... ....+.+||+.++.++++.++++.+.+. |.++...-.
T Consensus 220 i~i~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~- 298 (347)
T d1z45a2 220 LYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVT- 298 (347)
T ss_dssp CCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC----
T ss_pred eEEeCCCccccCCceeeeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeC-
Confidence 0 111236788888888888776532 2234578999999999999999988753 554332110
Q ss_pred HHHHHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHHHC
Q psy4557 608 KWFHKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETN-DHTVRQFLDNLRNS 674 (958)
Q Consensus 608 eW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~-~~~~~~~~~~~~~~ 674 (958)
.. +. +.. .....|++++++.| |... .++ ++-|+++++|+.+-
T Consensus 299 ---~~---~~-----------~~~----~~~~~d~sk~~~~l---Gw~p-~~~lee~i~~ti~w~~~n 341 (347)
T d1z45a2 299 ---GR---RA-----------GDV----LNLTAKPDRAKREL---KWQT-ELQVEDSCKDLWKWTTEN 341 (347)
T ss_dssp -----------------------C----CCCCBCCHHHHHHT---CCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ---CC---CC-----------CCC----CEeeECHHHHHHHH---CCCC-CCCHHHHHHHHHHHHHhC
Confidence 00 00 000 01234666665544 6443 333 35789999987753
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.92 E-value=2.1e-24 Score=240.20 Aligned_cols=304 Identities=16% Similarity=0.143 Sum_probs=202.3
Q ss_pred cCceEEeccccchHHHHHHHHhcCCC-CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTK-CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++|||||||||+|+||+++|++++. .+|+++.+..... ...++. .....++.++.+|+.
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~-~~~~~~------------~~~~~~i~~~~~Di~------ 62 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG-NKANLE------------AILGDRVELVVGDIA------ 62 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC-CGGGTG------------GGCSSSEEEEECCTT------
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccc-cHHHHH------------HhhcCCeEEEEccCC------
Confidence 46899999999999999999998753 4566554322110 000100 112468999999986
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCC----Ccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN----FQE 470 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~----~~e 470 (958)
+.+.+..+...++.|+|+|+..... ....++.++|+.||.+|++.|...+ ++++|+||.+|||..... ...
T Consensus 63 -d~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~-~k~i~~ss~~vyg~~~~~~~~~~~~ 140 (346)
T d1oc2a_ 63 -DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD-IRFHHVSTDEVYGDLPLREDLPGHG 140 (346)
T ss_dssp -CHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT-CEEEEEEEGGGGCCBCCGGGSTTTT
T ss_pred -CHHHHHHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhcccc-ccccccccceEecccCccccccccc
Confidence 3577888889999999999986543 2344677899999999999998877 589999999999853110 000
Q ss_pred c--ccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc---
Q psy4557 471 D--YTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA--- 544 (958)
Q Consensus 471 ~--~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~--- 544 (958)
. ........+..+.+.|+.||+.+|++++... +.|++++|+||++|||+...... .+..++.....-...
T Consensus 141 ~~~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~----~~~~~i~~~~~~~~~~i~ 216 (346)
T d1oc2a_ 141 EGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEK----FIPRQITNILAGIKPKLY 216 (346)
T ss_dssp CSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTS----HHHHHHHHHHHTCCCEEE
T ss_pred cCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccc----hhHHHHHHHHcCCceeEe
Confidence 0 0111123344567889999999999998765 45999999999999998653322 223333322222221
Q ss_pred CCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhH
Q psy4557 545 PDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLI 623 (958)
Q Consensus 545 P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~ 623 (958)
.+.....+|++|+++|++++.+.... ..+..||+.++.+.++.++++.+.+. +.+...+... ....
T Consensus 217 ~~g~~~r~~i~v~D~a~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~------ 283 (346)
T d1oc2a_ 217 GEGKNVRDWIHTNDHSTGVWAILTKG-RMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHV------TDRA------ 283 (346)
T ss_dssp TTSCCEEECEEHHHHHHHHHHHHHHC-CTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEE------CCCT------
T ss_pred CCCCccccccchhhHHHHHHHHHhhc-ccCccccccccccccchHHHHHHHHHhCCCCcceEEC------CCCC------
Confidence 23346789999999999999877654 35789999999999999999887653 3322111100 0000
Q ss_pred HHHhhccccccccCcccccHHHHHHHhhCCCCCCCC-C-HHHHHHHHHHHHH
Q psy4557 624 QILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPET-N-DHTVRQFLDNLRN 673 (958)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~-~-~~~~~~~~~~~~~ 673 (958)
+. ......|++++++.| |.+ |.+ + ++-|+++++|+.+
T Consensus 284 -----~~----~~~~~~d~~k~~~~L---Gw~-P~~t~l~e~i~~ti~w~~~ 322 (346)
T d1oc2a_ 284 -----GH----DLRYAIDASKLRDEL---GWT-PQFTDFSEGLEETIQWYTD 322 (346)
T ss_dssp -----TC----CCBCCBCCHHHHHHH---CCC-CSCCCHHHHHHHHHHHHHH
T ss_pred -----CC----CceeeeCHHHHHHHH---CCC-CcCCCHHHHHHHHHHHHHH
Confidence 00 011235788877666 544 444 3 4569999998764
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=2.4e-24 Score=236.88 Aligned_cols=301 Identities=14% Similarity=0.072 Sum_probs=202.5
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||+||+++||++ +.+|+++.|...... ..++... ...++++++.+||+.
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~-g~~V~~~~r~~~~~~-~~~l~~~-----------~~~~~~~~~~~Dl~d------- 60 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDT-RWRLREL-----------GIEGDIQYEDGDMAD------- 60 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCC-CHHHHHT-----------TCGGGEEEEECCTTC-------
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCCCccc-HHHHHHh-----------cccCCcEEEEccccC-------
Confidence 57999999999999999999987 589999999764321 2333321 123589999999874
Q ss_pred HHHHHHHh--cccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCC-ccEEEEecccccCCCCCCCccccc
Q psy4557 400 QDEYVSLS--YEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKI-KSFHYVSTDSIYPSTSENFQEDYT 473 (958)
Q Consensus 400 ~~~~~~l~--~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~-k~~~~vST~~v~~~~~~~~~e~~~ 473 (958)
...+.... ...++|+|+|+..... .....+...|+.||.++|+.|.+.+. ++|+|.||..+||........
T Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~--- 137 (321)
T d1rpna_ 61 ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQD--- 137 (321)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBC---
T ss_pred hHHhhhhhccccccccccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCC---
Confidence 34444433 3567999998876543 33456678899999999999987664 478889999998765332211
Q ss_pred ccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCC-----C
Q psy4557 474 VADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPD-----I 547 (958)
Q Consensus 474 ~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~-----~ 547 (958)
+..+..+.+.|+.||..+|+++..+. +.|++++++||+++||+...+ +.....+..++.. ...|.-|. .
T Consensus 138 ---E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~-~~~~~~i~~~~~~-~~~~~~~~i~~g~g 212 (321)
T d1rpna_ 138 ---ENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGI-EFVTRKVTDAVAR-IKLGKQQELRLGNV 212 (321)
T ss_dssp ---TTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCT-TSHHHHHHHHHHH-HHTTSCSCEEESCT
T ss_pred ---CCCCccccChhHHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccc-cccHHHHHHHHHH-HHhCCCCcEEECCC
Confidence 12334567899999999999998765 569999999999999987432 2222223333332 22333222 2
Q ss_pred CCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHhccCCCchhHHHH
Q psy4557 548 DWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLNKRELSEPLIQIL 626 (958)
Q Consensus 548 ~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~~~~~~~~~~~~~ 626 (958)
+...+|++|+++|++++.+..++. +..||+.++...++.++.+.+.+. |.+.+.+...++ . ..
T Consensus 213 ~~~r~~i~v~D~~~~~~~~~~~~~--~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~ 276 (321)
T d1rpna_ 213 DAKRDWGFAGDYVEAMWLMLQQDK--ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDP---A-----------FF 276 (321)
T ss_dssp TCEEECEEHHHHHHHHHHHHHSSS--CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECG---G-----------GC
T ss_pred CeEEccEEeHHHHHHHHHHHhcCC--cCCceecccccceehhhhHHHHHHhCCCccceeecCC---C-----------CC
Confidence 355799999999999999887654 467999999999999999887653 544322110000 0 00
Q ss_pred hhccccccccCcccccHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHH
Q psy4557 627 RNKGKEYLTVNNSYCQRNTLALLKSCDETYPETN-DHTVRQFLDNLR 672 (958)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~-~~~~~~~~~~~~ 672 (958)
+.+.. .....|++++++.| |.. |..+ ++.|+++++|+.
T Consensus 277 rp~~~----~~~~~d~~k~~k~l---G~~-P~~~l~e~i~~tv~~~l 315 (321)
T d1rpna_ 277 RPAEV----DVLLGNPAKAQRVL---GWK-PRTSLDELIRMMVEADL 315 (321)
T ss_dssp CSSCC----CBCCBCTHHHHHHH---CCC-CCSCHHHHHHHHHHHHH
T ss_pred CCCcc----CCccCCHHHHHHHH---CCC-cCCCHHHHHHHHHHHHH
Confidence 00000 11335788887766 443 3344 567888888754
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.92 E-value=5.5e-24 Score=241.04 Aligned_cols=314 Identities=12% Similarity=0.028 Sum_probs=196.2
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEec---cC-----------CChhhHHHHHHHHHHHhccccccccccCceE
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPV---RE-----------TPNKTLLQRLEDIMLKYHMSLDLNNYTDRLI 384 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clv---R~-----------~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~ 384 (958)
+++|||||||||||+||+++||+.+ .+|+++. |. ........++.... .....+++
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~ 70 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK---------ALTGKSIE 70 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHH---------HHHCCCCE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEecCCcccccccccccccccccchHHHHHHHH---------hhcCCCcE
Confidence 3689999999999999999999875 6788763 11 00111111111100 01135789
Q ss_pred EecccCCCCCCCCCcHHHHHHHhc--ccCEEEEcccccCcccC------hHHHHhhhHHHHHHHHHhhccCCCc-cEEEE
Q psy4557 385 LVKSDLSLEMLGLKNQDEYVSLSY--EIDMIIHAAAFVNLILP------YNALYKSNVLATKNLIEFSFLNKIK-SFHYV 455 (958)
Q Consensus 385 ~v~gDl~~~~lGL~~~~~~~~l~~--~vd~IiH~AA~v~~~~~------~~~~~~~NV~gt~~ll~~a~~~~~k-~~~~v 455 (958)
++.|||.. .+....+.. ++|+|||+||...+..+ ....+.+||.||.+||++|++.+.+ .|++.
T Consensus 71 ~~~~Dl~d-------~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ 143 (393)
T d1i24a_ 71 LYVGDICD-------FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKL 143 (393)
T ss_dssp EEESCTTS-------HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEccCCC-------HHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeec
Confidence 99999873 455666544 57999999997654322 2245779999999999999876554 67888
Q ss_pred ecccccCCCCCCCcccc-------cccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcC-
Q psy4557 456 STDSIYPSTSENFQEDY-------TVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWN- 526 (958)
Q Consensus 456 ST~~v~~~~~~~~~e~~-------~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n- 526 (958)
||..+|+.......+.. .....+.+..+.+.|+.||+.+|+++..+. +.|++++++||++|||+.......
T Consensus 144 ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~ 223 (393)
T d1i24a_ 144 GTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMH 223 (393)
T ss_dssp CCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGS
T ss_pred cccccccccccccccccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccc
Confidence 88888875433222211 111122344567889999999999998765 559999999999999987532211
Q ss_pred ------------hhHHHHHHHHHHHHhCCcC---CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEe--cCCCCCCHHH
Q psy4557 527 ------------LVDLNLYILKAITRLGYAP---DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNF--INTNPIHIKT 589 (958)
Q Consensus 527 ------------~~d~~~~l~~~~~~~g~~P---~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~--~n~~~~~~~~ 589 (958)
...++..+++.+..-..++ +....+||++|+++++++..+..+....+. |++ ..+..+++.+
T Consensus 224 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~-~~~~~~~~~~~si~e 302 (393)
T d1i24a_ 224 EELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGE-FRVFNQFTEQFSVNE 302 (393)
T ss_dssp GGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTC-EEEEEECSEEEEHHH
T ss_pred cccccccccccccccchhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccce-eeeecCCCCeeEHHH
Confidence 1123444554444322222 334568999999999999998876554443 333 2346788999
Q ss_pred HHHHHHHc----CCCccccChHHHHHHHhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCCHHHHH
Q psy4557 590 LVSVLNTY----GYNIKTVPYEKWFHKLNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVR 665 (958)
Q Consensus 590 l~~~l~~~----g~~~~~v~~~eW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~ 665 (958)
+.+++.+. |..++..... . +. ..... .....|+++. +++|.++-..-++.++
T Consensus 303 l~~~i~~~~~~~~~~~~~~~~~---------~-~~------~~~~~----~~~~~d~~k~----~~LGw~P~~~~~~~i~ 358 (393)
T d1i24a_ 303 LASLVTKAGSKLGLDVKKMTVP---------N-PR------VEAEE----HYYNAKHTKL----MELGLEPHYLSDSLLD 358 (393)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEC---------C-SS------CSCSS----CCCCBCCCHH----HHTTCCCCCCCHHHHH
T ss_pred HHHHHHHHHHhhCCCcceeecc---------C-CC------CCCCc----cEecCCHHHH----HHcCCccccCHHHHHH
Confidence 98888653 2222211100 0 00 00000 1122344443 3468775555668899
Q ss_pred HHHHHHHHC
Q psy4557 666 QFLDNLRNS 674 (958)
Q Consensus 666 ~~~~~~~~~ 674 (958)
.+++|+.+-
T Consensus 359 ~~~~~~~~~ 367 (393)
T d1i24a_ 359 SLLNFAVQF 367 (393)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998653
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.92 E-value=3.7e-24 Score=241.61 Aligned_cols=274 Identities=19% Similarity=0.232 Sum_probs=184.9
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEecc---CCCh---hhHHHHHHHHHHHhccccccccccCceEEecccCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVR---ETPN---KTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLE 393 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR---~~~~---~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~ 393 (958)
.+|||||||||||+||+++||++.+..|+|+.+ .... ....+++...+....... ......++.++.||+..
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Di~d- 80 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK-PPWADRYAALEVGDVRN- 80 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSC-CTTTTCCCEEEESCTTC-
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhcccc-ccccccceEEEECcccC-
Confidence 479999999999999999999888889999753 2111 111222222222221111 11224578899999874
Q ss_pred CCCCCcHHHHHHHh---cccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCC
Q psy4557 394 MLGLKNQDEYVSLS---YEIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN 467 (958)
Q Consensus 394 ~lGL~~~~~~~~l~---~~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~ 467 (958)
.+....+. ..+|+|||+||.+.... ........|+.||.++|+.|...++++++++||.++|+.....
T Consensus 81 ------~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~ 154 (383)
T d1gy8a_ 81 ------EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMG 154 (383)
T ss_dssp ------HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-
T ss_pred ------HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccc
Confidence 34444443 46799999999875432 2334567899999999999999999999999999999754321
Q ss_pred -CcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcC-----hhHHHHHHHHHHHH
Q psy4557 468 -FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWN-----LVDLNLYILKAITR 540 (958)
Q Consensus 468 -~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n-----~~d~~~~l~~~~~~ 540 (958)
..++..+...+.+..|.+.|+.||+.+|+++.... ..|++++++|++++||+....... ....++.++..+..
T Consensus 155 ~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~ 234 (383)
T d1gy8a_ 155 SVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMS 234 (383)
T ss_dssp ----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHH
T ss_pred cccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHh
Confidence 11222222233445678899999999999998865 469999999999999998754321 11223333222211
Q ss_pred -h---------------------CC---cCCCCCcCCcccHHHHHHHHHHHhcCc--------CCCCceEEecCCCCCCH
Q psy4557 541 -L---------------------GY---APDIDWYLEFTPVDFLTKSLVQLTTNV--------NNANKIYNFINTNPIHI 587 (958)
Q Consensus 541 -~---------------------g~---~P~~~~~~~~~pVD~va~aiv~l~~~~--------~~~~~v~h~~n~~~~~~ 587 (958)
. |. .++.....||++|+++|++++.+.... ...+.+||+.+..++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~ 314 (383)
T d1gy8a_ 235 DIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSV 314 (383)
T ss_dssp HHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEH
T ss_pred hccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeH
Confidence 0 00 012233468999999999998876421 22457999999999999
Q ss_pred HHHHHHHHHc-CCCc
Q psy4557 588 KTLVSVLNTY-GYNI 601 (958)
Q Consensus 588 ~~l~~~l~~~-g~~~ 601 (958)
.|+++.+.+. |.++
T Consensus 315 ~el~~~i~~~~~~~~ 329 (383)
T d1gy8a_ 315 REVIEVARKTTGHPI 329 (383)
T ss_dssp HHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHhCCCC
Confidence 9999988764 5543
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.91 E-value=1.5e-24 Score=241.01 Aligned_cols=260 Identities=12% Similarity=0.043 Sum_probs=178.3
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++|||||||||||+||+++||++ +.+|++++|..+. ...+....... .......++.||+..+
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~-G~~V~~~vR~~~~---~~~~~~~~~~~-------~~~~~~~~~~~Dl~~~---- 74 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEH-GYKVRGTARSASK---LANLQKRWDAK-------YPGRFETAVVEDMLKQ---- 74 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHH---HHHHHHHHHHH-------STTTEEEEECSCTTST----
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEeCCchh---HHHHHHhhhcc-------ccccccEEEeccccch----
Confidence 4689999999999999999999987 4789999996432 22232211111 1123445678998643
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccC-CCccEEEEecccccCCCCC---CC--ccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLN-KIKSFHYVSTDSIYPSTSE---NF--QED 471 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~-~~k~~~~vST~~v~~~~~~---~~--~e~ 471 (958)
..+..+...+|+|+|+|+.+.+..++..++.+||.||.|+|+.|.+. ++++|+|+||.++++.... .. .|+
T Consensus 75 ---~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~ 151 (342)
T d1y1pa1 75 ---GAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEK 151 (342)
T ss_dssp ---TTTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTT
T ss_pred ---hhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccc
Confidence 34555667899999999999988888888899999999999999775 6899999999876532211 11 111
Q ss_pred cc---------ccCcCCCCCCCCChhHHHHHHHHHHHHHhh---CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHH
Q psy4557 472 YT---------VADFDDFMTTTSGYGQSKIVSEYLVLNAGQ---MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAIT 539 (958)
Q Consensus 472 ~~---------~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~---~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~ 539 (958)
.. ......+..+.++|+.||+.+|+++....+ .++.++++||+.++|+...+..+. .....+++...
T Consensus 152 ~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~-~~~~~~~~~l~ 230 (342)
T d1y1pa1 152 SWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQS-GSTSGWMMSLF 230 (342)
T ss_dssp CCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCC-CHHHHHHHHHH
T ss_pred ccccccccccccccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccc-cchHHHHHHHH
Confidence 00 011122334556899999999999876532 367889999999999864332211 12233333333
Q ss_pred HhCCcC--CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 540 RLGYAP--DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 540 ~~g~~P--~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
.-...+ ......+|++|+++|++++.+..++... ..|+++++..++|.|+.+.+++.
T Consensus 231 ~g~~~~~~~~~~~~~~v~v~Dva~~~i~~l~~~~~~-g~~~~~~~~~~t~~eia~~i~k~ 289 (342)
T d1y1pa1 231 NGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIE-RRRVYGTAGTFDWNTVLATFRKL 289 (342)
T ss_dssp TTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHCTTCC-SCEEEECCEEECHHHHHHHHHHH
T ss_pred cCCcCcccCCccceeeeeHHHHHHHHHHhhcCcccc-ceEEEEcCCceEHHHHHHHHHHH
Confidence 222211 1234467999999999998877665544 44668888999999999999764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.3e-24 Score=239.62 Aligned_cols=258 Identities=16% Similarity=0.105 Sum_probs=178.3
Q ss_pred Cce-EEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 320 GNV-LLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 320 ~~V-llTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
++| ||||||||||+||+++|+++ +.+|++++|..+... ..++.+..... ......+++++.+|+..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~-g~~V~~i~r~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~Dl~d------ 67 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEK-GYEVHGIVRRSSSFN-TGRIEHLYKNP-----QAHIEGNMKLHYGDLTD------ 67 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCC-CTTTGGGC--------------CEEEEECCTTC------
T ss_pred CCEEEEecCCcHHHHHHHHHHHHC-cCEEEEEECCCcccc-hhhHHHHhhch-----hhhccCCcEEEEeecCC------
Confidence 467 99999999999999999986 679999999653210 01111100000 01223688999999873
Q ss_pred cHHHHHHHh--cccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCC---ccEEEEecccccCCCCC-CCc
Q psy4557 399 NQDEYVSLS--YEIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKI---KSFHYVSTDSIYPSTSE-NFQ 469 (958)
Q Consensus 399 ~~~~~~~l~--~~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~---k~~~~vST~~v~~~~~~-~~~ 469 (958)
.+.+..+. ..+++|+|+||..+... +...+.++||.||.+|+++|++.+. ++|+|+||.+|||.... ++.
T Consensus 68 -~~~~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~ 146 (347)
T d1t2aa_ 68 -STCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQK 146 (347)
T ss_dssp -HHHHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBC
T ss_pred -chhhHHHHhhcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCC
Confidence 45666664 45789999999765533 3345678999999999999987543 47999999999985432 233
Q ss_pred ccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---
Q psy4557 470 EDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP--- 545 (958)
Q Consensus 470 e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P--- 545 (958)
|+ .+..|.+.|+.||..||+++..+. +.|++++|+||+++||+..........+...+..........+
T Consensus 147 E~-------~~~~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g 219 (347)
T d1t2aa_ 147 ET-------TPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLG 219 (347)
T ss_dssp TT-------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEES
T ss_pred CC-------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecC
Confidence 33 233567899999999999998854 5699999999999999875433333344444444333222211
Q ss_pred CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH-cCCC
Q psy4557 546 DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT-YGYN 600 (958)
Q Consensus 546 ~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~~ 600 (958)
+.+...+|++|+++++++..+..+.. ...|++......++.+....+.. .|..
T Consensus 220 ~g~~~r~~i~v~D~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (347)
T d1t2aa_ 220 NLDAKRDWGHAKDYVEAMWLMLQNDE--PEDFVIATGEVHSVREFVEKSFLHIGKT 273 (347)
T ss_dssp CTTCEECCEEHHHHHHHHHHHHHSSS--CCCEEECCSCCEEHHHHHHHHHHHTTCC
T ss_pred CCcceeeeeEecHHHHHHHHHhhcCC--Cccceeccccccccchhhhhhhhhhcce
Confidence 23456899999999999999887653 35688888888899888776643 3443
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.9e-23 Score=230.75 Aligned_cols=256 Identities=18% Similarity=0.173 Sum_probs=180.5
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCC-------hhhHHHHHHHHHHHhccccccccccCceEEecccCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETP-------NKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSL 392 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~-------~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~ 392 (958)
++|||||||||+|+||+++||+.+ .+|++++|... ......++... ...++.++.+|+..
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g-~~V~~ld~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Dl~d 69 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQEL------------TGRSVEFEEMDILD 69 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHHHHH------------HTCCCEEEECCTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCccccccccchHHHHHHHHh------------cCCCcEEEEeeccc
Confidence 579999999999999999999874 68888865221 11222222211 13588999999873
Q ss_pred CCCCCCcHHHHHHHh--cccCEEEEcccccCcccC---hHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCC
Q psy4557 393 EMLGLKNQDEYVSLS--YEIDMIIHAAAFVNLILP---YNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN 467 (958)
Q Consensus 393 ~~lGL~~~~~~~~l~--~~vd~IiH~AA~v~~~~~---~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~ 467 (958)
.+...... ..+++|+|+||..+...+ .....++||.||.+++++|...++++|+|+||..+|+.....
T Consensus 70 -------~~~l~~~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~ 142 (346)
T d1ek6a_ 70 -------QGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYL 142 (346)
T ss_dssp -------HHHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSS
T ss_pred -------cccccccccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccc
Confidence 34444443 456789999998654322 235578999999999999999999999999999999865433
Q ss_pred CcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh--hCCCCEEEEecCceeccCCCCCc------ChhHHHHHHHHHHH
Q psy4557 468 FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG--QMGLPVSIVRCGNIGGSLEFKNW------NLVDLNLYILKAIT 539 (958)
Q Consensus 468 ~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~--~~glp~~I~R~g~i~G~~~~g~~------n~~d~~~~l~~~~~ 539 (958)
..+... ....+.+.|+.+|+.+|+.+.... ..|++.+++|++++||+...+.+ ....++..+++...
T Consensus 143 ~~~~~~-----~~~~~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (346)
T d1ek6a_ 143 PLDEAH-----PTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAI 217 (346)
T ss_dssp SBCTTS-----CCCCCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHH
T ss_pred cccccc-----cccccCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHH
Confidence 222211 112456789999999999987643 35999999999999998765432 12234555554443
Q ss_pred HhCCc----------CCCCCcCCcccHHHHHHHHHHHhcC--cCCCCceEEecCCCCCCHHHHHHHHHHc-CCC
Q psy4557 540 RLGYA----------PDIDWYLEFTPVDFLTKSLVQLTTN--VNNANKIYNFINTNPIHIKTLVSVLNTY-GYN 600 (958)
Q Consensus 540 ~~g~~----------P~~~~~~~~~pVD~va~aiv~l~~~--~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~ 600 (958)
..+.. ++.....||++|+++|.++..+... ....+++||+.++..+++.|+++.+.+. |.+
T Consensus 218 ~~~~~i~i~g~~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~ 291 (346)
T d1ek6a_ 218 GRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKK 291 (346)
T ss_dssp TSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSC
T ss_pred cCCCcEEEcCCcccCCCCCeeEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCCC
Confidence 32211 1222457999999999998876533 2335679999999999999999988764 543
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.90 E-value=6.4e-23 Score=227.02 Aligned_cols=252 Identities=15% Similarity=0.109 Sum_probs=172.2
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+++||||||||||+||+++||++ +.+|++++|..+... .+++....... ...-..++.++.+|+..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~-g~~V~~~~r~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~Di~~------- 67 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGK-GYEVHGLIRRSSNFN-TQRINHIYIDP-----HNVNKALMKLHYADLTD------- 67 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCC-CTTTTTTC-------------CCEEEEECCTTC-------
T ss_pred CEEEEeCCccHHHHHHHHHHHHC-cCEEEEEECCCcccc-hhhhhhhhhhh-----hhccccceEEEEccccC-------
Confidence 57999999999999999999986 579999999654210 01111000000 00113567889999873
Q ss_pred HHHHHHHh--cccCEEEEcccccCcccC---hHHHHhhhHHHHHHHHHhhccC-----CCccEEEEecccccCCCCCCCc
Q psy4557 400 QDEYVSLS--YEIDMIIHAAAFVNLILP---YNALYKSNVLATKNLIEFSFLN-----KIKSFHYVSTDSIYPSTSENFQ 469 (958)
Q Consensus 400 ~~~~~~l~--~~vd~IiH~AA~v~~~~~---~~~~~~~NV~gt~~ll~~a~~~-----~~k~~~~vST~~v~~~~~~~~~ 469 (958)
.+.+.... ..+|+|||+||....... .......|+.||.++++.|+.. ...++++.||..+++.......
T Consensus 68 ~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~ 147 (339)
T d1n7ha_ 68 ASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQS 147 (339)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBC
T ss_pred HHHHHHHHhhhccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCCC
Confidence 34444433 467999999998765443 3356788999999999887642 3346788888888876554444
Q ss_pred ccccccCcCCCCCCCCChhHHHHHHHHHHHHHhh-CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC---
Q psy4557 470 EDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQ-MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP--- 545 (958)
Q Consensus 470 e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~-~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P--- 545 (958)
|+. +..|.+.|+.||+.+|+++..+.+ .|++++++||++|||+.....+....+...+.+. ..+..+
T Consensus 148 E~~-------~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~--~~~~~~~~~ 218 (339)
T d1n7ha_ 148 ETT-------PFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRI--KVGLQTKLF 218 (339)
T ss_dssp TTS-------CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHH--HHTSCCCEE
T ss_pred CCC-------CCCCcchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHH--hcCCCCeEE
Confidence 432 335678999999999999987654 5999999999999998743322222222222222 223222
Q ss_pred --CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 546 --DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 546 --~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
+....+||++|+++|+++..+..+.. ...+++......++.++++.+..
T Consensus 219 ~g~~~~~rd~~~v~D~a~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~ 269 (339)
T d1n7ha_ 219 LGNLQASRDWGFAGDYVEAMWLMLQQEK--PDDYVVATEEGHTVEEFLDVSFG 269 (339)
T ss_dssp ESCTTCEEECEEHHHHHHHHHHHHTSSS--CCEEEECCSCEEEHHHHHHHHHH
T ss_pred eCCCCccccceeeehHHHHHHHHHhcCC--CCccccccccccccchhhhhhhh
Confidence 23356899999999999999887654 34567777788999999887765
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=5.1e-23 Score=225.54 Aligned_cols=285 Identities=16% Similarity=0.122 Sum_probs=184.2
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++|||||||||||+||+++|++++. .|+.+.+... .| +.+
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~~~~--------------------------------~~-------~~~ 42 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRTRDE--------------------------------LN-------LLD 42 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTT-EEEECCCTTT--------------------------------CC-------TTC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecCchh--------------------------------cc-------ccC
Confidence 5799999999999999999998754 3433222100 12 222
Q ss_pred HHHHHHH--hcccCEEEEcccccCcc----cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcccc
Q psy4557 400 QDEYVSL--SYEIDMIIHAAAFVNLI----LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDY 472 (958)
Q Consensus 400 ~~~~~~l--~~~vd~IiH~AA~v~~~----~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~ 472 (958)
.+....+ ...+|.|||+|+.+... .+..++...||.||.+||+.|.+.++++|+|+||.+|||.... +..|+.
T Consensus 43 ~~~~~~~~~~~~~d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~ 122 (315)
T d1e6ua_ 43 SRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESE 122 (315)
T ss_dssp HHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGG
T ss_pred HHHHHHHHhhcCCCEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCc
Confidence 3333333 24689999999887542 3455677899999999999999999999999999999986532 344432
Q ss_pred cccCcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHH---HHHHhCCc----
Q psy4557 473 TVADFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK---AITRLGYA---- 544 (958)
Q Consensus 473 ~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~---~~~~~g~~---- 544 (958)
+... .+..+.+.|+.||..+|+++..+. +.|++++|+||++|||+..............+.. .....+..
T Consensus 123 ~~~~--~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (315)
T d1e6ua_ 123 LLQG--TLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVV 200 (315)
T ss_dssp TTSS--CCCGGGHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEE
T ss_pred cccC--CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEE
Confidence 2211 111233569999999999998865 4599999999999999976543322222222211 11111111
Q ss_pred -CCCCCcCCcccHHHHHHHHHHHhcCc--------CCCCceEEecCCCCCCHHHHHHHHHHc-CCCccccChHHHHHHHh
Q psy4557 545 -PDIDWYLEFTPVDFLTKSLVQLTTNV--------NNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHKLN 614 (958)
Q Consensus 545 -P~~~~~~~~~pVD~va~aiv~l~~~~--------~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~~~ 614 (958)
.+.....+++.|+++++++..+.... ......+++..+.+.++.++.+.+.+. |++..... . .
T Consensus 201 ~g~g~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~-~------~ 273 (315)
T d1e6ua_ 201 WGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVF-D------A 273 (315)
T ss_dssp ESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEE-E------T
T ss_pred cCCCceEEEEEEeehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEE-C------C
Confidence 12334579999999999998876432 224567999998899999998887653 55432211 0 0
Q ss_pred ccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHHH
Q psy4557 615 KRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETN-DHTVRQFLDNLRN 673 (958)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~-~~~~~~~~~~~~~ 673 (958)
.+.. +. .....|+++ ++++|+. |..+ ++-|++.++|+.+
T Consensus 274 ~~~~----------~~-----~~~~~d~sk----~k~Lg~~-p~~~l~e~i~~ti~w~~~ 313 (315)
T d1e6ua_ 274 SKPD----------GT-----PRKLLDVTR----LHQLGWY-HEISLEAGLASTYQWFLE 313 (315)
T ss_dssp TSCC----------CC-----SBCCBCCHH----HHHTTCC-CCCCHHHHHHHHHHHHHH
T ss_pred CCCC----------CC-----ceeccCHHH----HHHcCCC-CCCCHHHHHHHHHHHHHH
Confidence 0000 00 011245554 3557877 5555 5679999999874
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.1e-22 Score=212.95 Aligned_cols=209 Identities=15% Similarity=0.068 Sum_probs=156.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCC-eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~-~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
+.++|||||||||+|+||+++|++++.. +|++++|...... .....++....+|+..
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~------------------~~~~~~i~~~~~D~~~---- 70 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD------------------EEAYKNVNQEVVDFEK---- 70 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC------------------SGGGGGCEEEECCGGG----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhc------------------ccccceeeeeeecccc----
Confidence 3468999999999999999999988764 8999999654211 1123467777788763
Q ss_pred CCcHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccC
Q psy4557 397 LKNQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVAD 476 (958)
Q Consensus 397 L~~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~ 476 (958)
.+.+......+|+|||+|+......++..+..+|+.++.+++++|...++++|+|+||.++++.
T Consensus 71 ---~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~------------- 134 (232)
T d2bkaa1 71 ---LDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------- 134 (232)
T ss_dssp ---GGGGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------
T ss_pred ---cccccccccccccccccccccccccchhhhhhhcccccceeeecccccCccccccCCccccccC-------------
Confidence 2456666788999999999887777778889999999999999999999999999999876531
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHhhCCCC-EEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCccc
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAGQMGLP-VSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTP 555 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp-~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~p 555 (958)
+.+.|+++|+.+|+.+.+ .|++ ++|+|||.++|+.... +.. ..+++. .++..|........+|
T Consensus 135 ------~~~~Y~~~K~~~E~~l~~---~~~~~~~IlRP~~i~G~~~~~--~~~---~~~~~~--~~~~~~~~~~~~~~I~ 198 (232)
T d2bkaa1 135 ------SNFLYLQVKGEVEAKVEE---LKFDRYSVFRPGVLLCDRQES--RPG---EWLVRK--FFGSLPDSWASGHSVP 198 (232)
T ss_dssp ------CSSHHHHHHHHHHHHHHT---TCCSEEEEEECCEEECTTGGG--SHH---HHHHHH--HHCSCCTTGGGGTEEE
T ss_pred ------ccchhHHHHHHhhhcccc---ccccceEEecCceeecCCCcC--cHH---HHHHHH--HhhccCCcccCCCeEE
Confidence 235699999999998854 3665 8999999999986432 111 122221 2344454434456799
Q ss_pred HHHHHHHHHHHhcCcCCCCceEEecC
Q psy4557 556 VDFLTKSLVQLTTNVNNANKIYNFIN 581 (958)
Q Consensus 556 VD~va~aiv~l~~~~~~~~~v~h~~n 581 (958)
|+++|++++..+..+.. +.+|.+.|
T Consensus 199 ~~dvA~a~i~~~~~~~~-~~~~i~~~ 223 (232)
T d2bkaa1 199 VVTVVRAMLNNVVRPRD-KQMELLEN 223 (232)
T ss_dssp HHHHHHHHHHHHTSCCC-SSEEEEEH
T ss_pred HHHHHHHHHHHHhcCcc-CCeEEEcH
Confidence 99999999998866543 45666654
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.88 E-value=1.2e-21 Score=215.93 Aligned_cols=307 Identities=17% Similarity=0.148 Sum_probs=195.6
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||+||+++|+++ +.+|+|+.|-.... ...++.... ...+++++.||+.. .
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~-g~~V~~id~~~~~~-~~~~~~~~~-----------~~~~~~~i~~Di~~-------~ 61 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKG-ATDNLHWLS-----------SLGNFEFVHGDIRN-------K 61 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSTT-HHHHHHHHH-----------TTCCCEEEECCTTC-------H
T ss_pred EEEEECCCcHHHHHHHHHHHHC-cCEEEEEECCCccc-chhHHHHhh-----------ccCCcEEEEcccCC-------H
Confidence 6999999999999999999987 47899986533221 223332211 13588999999873 3
Q ss_pred HHHHHHhc--ccCEEEEcccccCccc---ChHHHHhhhHHHHHHHHHhhccCCCccEEEEeccccc-CCCCCC-Cccccc
Q psy4557 401 DEYVSLSY--EIDMIIHAAAFVNLIL---PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY-PSTSEN-FQEDYT 473 (958)
Q Consensus 401 ~~~~~l~~--~vd~IiH~AA~v~~~~---~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~-~~~~~~-~~e~~~ 473 (958)
+.+..+.. ++|+|||+||.++... ....+.++||.||.|||++|...+++++++.||.+++ +..... ..+...
T Consensus 62 ~~l~~~~~~~~~d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~ 141 (338)
T d1orra_ 62 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETET 141 (338)
T ss_dssp HHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSS
T ss_pred HHHHHHHHhcCCceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccc
Confidence 55666554 4699999999986544 3356788999999999999998887776666665544 432211 000000
Q ss_pred ---------ccCcCCCCCCCCChhHHHHHHHHHHHHH-hhCCCCEEEEecCceeccCCCCCcC---hhHHHHHHHHHHHH
Q psy4557 474 ---------VADFDDFMTTTSGYGQSKIVSEYLVLNA-GQMGLPVSIVRCGNIGGSLEFKNWN---LVDLNLYILKAITR 540 (958)
Q Consensus 474 ---------~~~~~~~~~~~~gY~~SK~~aE~lv~~a-~~~glp~~I~R~g~i~G~~~~g~~n---~~d~~~~l~~~~~~ 540 (958)
.........+.+.|+.+|+.+|.++... ...+....+.|+.+++|+...+... ...++..+++....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (338)
T d1orra_ 142 RYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNG 221 (338)
T ss_dssp CEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTT
T ss_pred cccccccccCcccCCccccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhc
Confidence 0011222345678999999999998765 4569999999999999876644322 12233333332222
Q ss_pred hCC-c---CCCCCcCCcccHHHHHHHHHHHhcCc-CCCCceEEecC--CCCCCHHHHHHHHHHc-CCCccccChHHHHHH
Q psy4557 541 LGY-A---PDIDWYLEFTPVDFLTKSLVQLTTNV-NNANKIYNFIN--TNPIHIKTLVSVLNTY-GYNIKTVPYEKWFHK 612 (958)
Q Consensus 541 ~g~-~---P~~~~~~~~~pVD~va~aiv~l~~~~-~~~~~v~h~~n--~~~~~~~~l~~~l~~~-g~~~~~v~~~eW~~~ 612 (958)
.+. + .+.....+|++|++++++++.+.... ...+++||+.. +..+++.|++..+... |.+.+.....
T Consensus 222 ~~~~~~~~g~g~~~r~~~~v~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~----- 296 (338)
T d1orra_ 222 INKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP----- 296 (338)
T ss_dssp CCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEEC-----
T ss_pred cCCceEEeCCCceeEeeecccchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCC-----
Confidence 221 1 12335689999999999999876543 23578999854 4567888998888754 4433211100
Q ss_pred HhccCCCchhHHHHhhccccccccCcccccHHHHHHHhhCCCCCCCCC-HHHHHHHHHHHHH
Q psy4557 613 LNKRELSEPLIQILRNKGKEYLTVNNSYCQRNTLALLKSCDETYPETN-DHTVRQFLDNLRN 673 (958)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~-~~~~~~~~~~~~~ 673 (958)
.+. ... .....|++++++.| |.+ |.++ ++.|+++++|+..
T Consensus 297 --~~~-----------~~~----~~~~~d~~k~~~~L---g~~-p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 297 --VRE-----------SDQ----RVFVADIKKITNAI---DWS-PKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp --CCS-----------SCC----SEECBCCHHHHHHH---CCC-CCSCHHHHHHHHHHHHHH
T ss_pred --CCC-----------CCc----CeeeECHHHHHHHH---CCC-cCCCHHHHHHHHHHHHHc
Confidence 000 000 11234788888777 554 3334 3579999998764
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.2e-19 Score=196.59 Aligned_cols=241 Identities=15% Similarity=0.205 Sum_probs=156.2
Q ss_pred eEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcHH
Q psy4557 322 VLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQD 401 (958)
Q Consensus 322 VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~~ 401 (958)
|||||||||||+||+++|++++...|+++.+-.+.... .++. .... .-..-..|
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~-~~~~----~~~~---------~~~~~~~~------------ 55 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-VNLV----DLNI---------ADYMDKED------------ 55 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGG-HHHH----TSCC---------SEEEEHHH------------
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchh-hccc----ccch---------hhhccchH------------
Confidence 89999999999999999998865678887543332111 1111 0000 00000111
Q ss_pred HHHHH-----hcccCEEEEcccccCcc-cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCccccccc
Q psy4557 402 EYVSL-----SYEIDMIIHAAAFVNLI-LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVA 475 (958)
Q Consensus 402 ~~~~l-----~~~vd~IiH~AA~v~~~-~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~ 475 (958)
....+ ...+++|+|+||..... .+...+...|+.++.++++.+...++ ++++.||..+++.......+..
T Consensus 56 ~~~~~~~~~~~~~~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i-~~v~~ss~~~~~~~~~~~~~~~--- 131 (307)
T d1eq2a_ 56 FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESR--- 131 (307)
T ss_dssp HHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSG---
T ss_pred HHHHHhhhhcccchhhhhhhcccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc---
Confidence 11111 24678999999976543 34455677889999999999988875 5667777677654332211111
Q ss_pred CcCCCCCCCCChhHHHHHHHHHHHHHh-hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc----CCCCCc
Q psy4557 476 DFDDFMTTTSGYGQSKIVSEYLVLNAG-QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA----PDIDWY 550 (958)
Q Consensus 476 ~~~~~~~~~~gY~~SK~~aE~lv~~a~-~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~----P~~~~~ 550 (958)
.+..+.+.|+.+|..+|.++..+. +.|++++++||+++||+..............+.+....-... .+..+.
T Consensus 132 ---~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 208 (307)
T d1eq2a_ 132 ---EYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFK 208 (307)
T ss_dssp ---GGCCCSSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------C
T ss_pred ---cccccccccccccchhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeecCcccee
Confidence 112456789999999999998765 569999999999999998653322233344444433221111 122356
Q ss_pred CCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc
Q psy4557 551 LEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY 597 (958)
Q Consensus 551 ~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~ 597 (958)
++|++|+++++++..+..+. ...+||+.++...++.++++.+.+.
T Consensus 209 r~~~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~si~~i~~~i~~~ 253 (307)
T d1eq2a_ 209 RDFVYVGDVADVNLWFLENG--VSGIFNLGTGRAESFQAVADATLAY 253 (307)
T ss_dssp BCEEEHHHHHHHHHHHHHHC--CCEEEEESCSCCBCHHHHHHHC---
T ss_pred eeeeecccHHHHHHHHhhhc--cccccccccccchhHHHHHHHHHHh
Confidence 89999999999999877654 3579999999999999999887654
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.81 E-value=2.2e-20 Score=192.30 Aligned_cols=190 Identities=19% Similarity=0.121 Sum_probs=134.6
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCC-eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~-~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++|||||||||+|+||+++|++++.. +|+++.|..... ..++....+|+.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~----------------------~~~~~~~~~d~~------ 53 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE----------------------HPRLDNPVGPLA------ 53 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC----------------------CTTEECCBSCHH------
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh----------------------cccccccccchh------
Confidence 478999999999999999999998764 799988864321 134444444432
Q ss_pred CcHHHHHHHhcccCEEEEcccccC-cccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccC
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVN-LILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVAD 476 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~-~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~ 476 (958)
+....+...+|.||||++... .......+...|+.++.+++++|+..++++|+|+||.++++.
T Consensus 54 ---~~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~------------- 117 (212)
T d2a35a1 54 ---ELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------- 117 (212)
T ss_dssp ---HHGGGCCSCCSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------
T ss_pred ---hhhhccccchheeeeeeeeeccccccccccccchhhhhhhcccccccccccccccccccccccc-------------
Confidence 112223456899999988653 334456788899999999999999999999999999877542
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHhhCCCC-EEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCccc
Q psy4557 477 FDDFMTTTSGYGQSKIVSEYLVLNAGQMGLP-VSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTP 555 (958)
Q Consensus 477 ~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp-~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~p 555 (958)
..+.|.++|+.+|+.+. +.+++ ++|+||+.|||+.... ....++ .....+-+...+..++
T Consensus 118 ------~~~~y~~~K~~~E~~l~---~~~~~~~~I~Rp~~v~G~~~~~--~~~~~~--------~~~~~~~~~~~~~~i~ 178 (212)
T d2a35a1 118 ------SSIFYNRVKGELEQALQ---EQGWPQLTIARPSLLFGPREEF--RLAEIL--------AAPIARILPGKYHGIE 178 (212)
T ss_dssp ------CSSHHHHHHHHHHHHHT---TSCCSEEEEEECCSEESTTSCE--EGGGGT--------TCCCC----CHHHHHH
T ss_pred ------cccchhHHHHHHhhhcc---ccccccceeeCCcceeCCcccc--cHHHHH--------HHHHhhccCCCCcEEE
Confidence 23469999999999874 34775 9999999999986532 111110 0011111223345689
Q ss_pred HHHHHHHHHHHhcCcC
Q psy4557 556 VDFLTKSLVQLTTNVN 571 (958)
Q Consensus 556 VD~va~aiv~l~~~~~ 571 (958)
||++|++|+.++.++.
T Consensus 179 v~DvA~ai~~~~~~~~ 194 (212)
T d2a35a1 179 ACDLARALWRLALEEG 194 (212)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999987654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.80 E-value=3.1e-19 Score=198.42 Aligned_cols=250 Identities=18% Similarity=0.137 Sum_probs=164.7
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++++|||||||||||+||++.|++.+ ..|+.+.|........ + +. ....++++++.|||+.
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~--~-~~----------~~~~~~i~~~~~Dl~d----- 67 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSL--F-ET----------ARVADGMQSEIGDIRD----- 67 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCH--H-HH----------TTTTTTSEEEECCTTC-----
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCccHHH--H-hh----------hhcccCCeEEEeeccC-----
Confidence 56899999999999999999999874 6899998876533211 1 00 1123578999999863
Q ss_pred CcHHHHHHHh--cccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccc-cCCCCCCCccc
Q psy4557 398 KNQDEYVSLS--YEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSI-YPSTSENFQED 471 (958)
Q Consensus 398 ~~~~~~~~l~--~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v-~~~~~~~~~e~ 471 (958)
.+.+..+. ..+|+|+|+||..... .....+..+|+.||.++++.|...+.+.+++.||.++ ++........+
T Consensus 68 --~~~l~~~~~~~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 145 (356)
T d1rkxa_ 68 --QNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYR 145 (356)
T ss_dssp --HHHHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBC
T ss_pred --hHhhhhhhhhchhhhhhhhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccc
Confidence 35555554 4679999999986443 2334577899999999999998755455544444444 43322211111
Q ss_pred ccccCcCCCCCCCCChhHHHHHHHHHHHHHh----------hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh
Q psy4557 472 YTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----------QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL 541 (958)
Q Consensus 472 ~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----------~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~ 541 (958)
...+..+.+.|+.+|..+|..+.... ..++++++.||+++||+.+.+. ..++..+++....-
T Consensus 146 -----~~~~~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~---~~~i~~~~~~~~~~ 217 (356)
T d1rkxa_ 146 -----ENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL---DRIVPDILRAFEQS 217 (356)
T ss_dssp -----TTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS---SCHHHHHHHHHHTT
T ss_pred -----cccccCCCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchh---hHHHHHHHHHHhCC
Confidence 11223567899999999998886532 3478999999999999876433 34556666665432
Q ss_pred CCc--CCCCCcCCcccHHHHHHHHHHHhcCcCCC----CceEEec--CCCCCCHHHHHHHHHH
Q psy4557 542 GYA--PDIDWYLEFTPVDFLTKSLVQLTTNVNNA----NKIYNFI--NTNPIHIKTLVSVLNT 596 (958)
Q Consensus 542 g~~--P~~~~~~~~~pVD~va~aiv~l~~~~~~~----~~v~h~~--n~~~~~~~~l~~~l~~ 596 (958)
... .......++++|+++++++..++...... +..++.. ....+++.++++.+.+
T Consensus 218 ~~~~~~~~~~~~~~~~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 280 (356)
T d1rkxa_ 218 QPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVK 280 (356)
T ss_dssp CCEECSCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHH
T ss_pred CceEEeeccccccccccccccchhhhhhhhhcccccccccccccccccccccccchhhhhhHH
Confidence 221 12335678999999999988776543211 2223322 3445677777776654
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.78 E-value=1.4e-18 Score=185.98 Aligned_cols=268 Identities=16% Similarity=0.174 Sum_probs=183.5
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||++|+++|..+ +.+|+++.|.. .|+ .+.
T Consensus 3 KIlItGasGfiG~~l~~~L~~~-g~~Vi~~~r~~---------------------------------~D~-------~d~ 41 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGK-NVEVIPTDVQD---------------------------------LDI-------TNV 41 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTS-SEEEEEECTTT---------------------------------CCT-------TCH
T ss_pred EEEEECCCCHHHHHHHHHHHhC-CCEEEEeechh---------------------------------ccC-------CCH
Confidence 5999999999999999998764 56888877642 122 223
Q ss_pred HHHHHHh--cccCEEEEcccccCcc---cChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCC-Ccccccc
Q psy4557 401 DEYVSLS--YEIDMIIHAAAFVNLI---LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSEN-FQEDYTV 474 (958)
Q Consensus 401 ~~~~~l~--~~vd~IiH~AA~v~~~---~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~-~~e~~~~ 474 (958)
+..+... ..+|+|||+|+..+.. ..+......|+..+.++++.+.... ..+++.||..||+..... ..|.
T Consensus 42 ~~~~~~l~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~~~ss~~v~~~~~~~~~~e~--- 117 (281)
T d1vl0a_ 42 LAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG-AEIVQISTDYVFDGEAKEPITEF--- 117 (281)
T ss_dssp HHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT-CEEEEEEEGGGSCSCCSSCBCTT---
T ss_pred HHHHHHHHHcCCCEEEeeccccccccccccchhhccccccccccccccccccc-ccccccccceeeecccccccccc---
Confidence 3334333 2679999999986542 2344566789999999988887655 678889999998764322 2222
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCC-CCCcCCc
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPD-IDWYLEF 553 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~-~~~~~~~ 553 (958)
++..+.+.|+++|+.+|+++.. .+.+.+|+||+++||+.. ++...+++.+...+..+- .++..++
T Consensus 118 ----~~~~~~~~~~~~k~~~e~~~~~---~~~~~~i~R~~~vyG~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (281)
T d1vl0a_ 118 ----DEVNPQSAYGKTKLEGENFVKA---LNPKYYIVRTAWLYGDGN-------NFVKTMINLGKTHDELKVVHDQVGTP 183 (281)
T ss_dssp ----SCCCCCSHHHHHHHHHHHHHHH---HCSSEEEEEECSEESSSS-------CHHHHHHHHHHHCSEEEEESSCEECC
T ss_pred ----ccccchhhhhhhhhHHHHHHHH---hCCCccccceeEEeCCCc-------ccccchhhhhccCCceeecCCceecc
Confidence 2234567899999999999865 378999999999999863 234555555555443321 2466899
Q ss_pred ccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHHHHHHHHHHc-CCCccc--cChHHHHHHHhccCCCchhHHHHhhcc
Q psy4557 554 TPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIKTLVSVLNTY-GYNIKT--VPYEKWFHKLNKRELSEPLIQILRNKG 630 (958)
Q Consensus 554 ~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~~l~~~l~~~-g~~~~~--v~~~eW~~~~~~~~~~~~~~~~~~~~~ 630 (958)
++||++++++..+..+.. ..+||+.++.++++.|+++.+.+. |.+.+. ++.++|-.. . . .
T Consensus 184 i~v~D~~~~~~~~~~~~~--~g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~----a-~----------r 246 (281)
T d1vl0a_ 184 TSTVDLARVVLKVIDEKN--YGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRP----A-K----------R 246 (281)
T ss_dssp EEHHHHHHHHHHHHHHTC--CEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCS----S-C----------C
T ss_pred chhhhhhhhhhhhhhhcc--cCceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCc----C-C----------C
Confidence 999999999999986643 359999999999999999988754 665443 332222100 0 0 0
Q ss_pred ccccccCcccccHHHHHHHhhCCCCCCCCCHHHHHHHHHHHH
Q psy4557 631 KEYLTVNNSYCQRNTLALLKSCDETYPETNDHTVRQFLDNLR 672 (958)
Q Consensus 631 ~~~~~~~~~~~~~~t~~~L~~~~~~~p~~~~~~~~~~~~~~~ 672 (958)
+ .....|+++.++. .|++.|.. ++-|++++++++
T Consensus 247 p----~~~~ld~~k~~~~---~g~~~~~~-~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 247 P----KYSVLRNYMLELT---TGDITREW-KESLKEYIDLLQ 280 (281)
T ss_dssp C----SBCCBCCHHHHHT---TCCCCCBH-HHHHHHHHHHHT
T ss_pred c----cccccCHHHHHHH---hCCCCCCH-HHHHHHHHHHhc
Confidence 0 1123577766544 46665544 567899998874
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.77 E-value=1.2e-18 Score=181.62 Aligned_cols=223 Identities=15% Similarity=0.105 Sum_probs=153.9
Q ss_pred cCceEEeccccchHHHHHHHHhcCCC-CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTK-CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++|||||||||+|+|+++.|++++. ..|+|+.|..+. .. ....+++++.+|+.
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~------~~-------------~~~~~~~~~~~d~~------ 57 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG------KE-------------KIGGEADVFIGDIT------ 57 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHH------HH-------------HTTCCTTEEECCTT------
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHH------HH-------------hccCCcEEEEeeec------
Confidence 46899999999999999999998754 578999985321 10 11356788899976
Q ss_pred CcHHHHHHHhcccCEEEEcccccCccc----------------ChHHHHhhhHHHHHHHHHhhccCCCccEEEEeccccc
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLIL----------------PYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIY 461 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~~----------------~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~ 461 (958)
+.+.+..+.+++|.|||+|+...... .......+|+.|++++++.+.....+.+.+.|+..++
T Consensus 58 -~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 136 (252)
T d2q46a1 58 -DADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGT 136 (252)
T ss_dssp -SHHHHHHHHTTCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTT
T ss_pred -cccccccccccceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccC
Confidence 34678888899999999998643211 1223456899999999999988777889999887665
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL 541 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~ 541 (958)
..... .. ......|...|...+.+. .+.|++++|+|||.++|+......-. .
T Consensus 137 ~~~~~-------~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~ilRp~~v~g~~~~~~~~~-------------~ 188 (252)
T d2q46a1 137 NPDHP-------LN-----KLGNGNILVWKRKAEQYL---ADSGTPYTIIRAGGLLDKEGGVRELL-------------V 188 (252)
T ss_dssp CTTCG-------GG-----GGGGCCHHHHHHHHHHHH---HHSSSCEEEEEECEEECSCTTSSCEE-------------E
T ss_pred CCCcc-------cc-----cccccchhhhhhhhhhhh---hcccccceeecceEEECCCcchhhhh-------------h
Confidence 42210 00 012335666666655443 35699999999999999874322110 0
Q ss_pred CCcC-CCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCC---CCCHHHHHHHHH
Q psy4557 542 GYAP-DIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTN---PIHIKTLVSVLN 595 (958)
Q Consensus 542 g~~P-~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~---~~~~~~l~~~l~ 595 (958)
+..+ .......++++|++|++++.+..++...+++||++++. ..++.++.+.+.
T Consensus 189 ~~~~~~~~~~~~~i~~~Dva~a~~~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~ 246 (252)
T d2q46a1 189 GKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFS 246 (252)
T ss_dssp ESTTGGGGSSCCEEEHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHT
T ss_pred ccCcccccCCCCeEEHHHHHHHHHHHhCCccccCcEEEEeeCCCCCChhHHHHHHHHH
Confidence 1111 12344678999999999999988877778999998643 234555554443
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=5.6e-18 Score=173.23 Aligned_cols=201 Identities=11% Similarity=0.030 Sum_probs=151.0
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|+|||||||+|++++++||+++ .+|.+++|...... .....+++++.||++.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~~~R~~~~~~------------------~~~~~~~~~~~gD~~d------ 57 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLP------------------SEGPRPAHVVVGDVLQ------ 57 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSC------------------SSSCCCSEEEESCTTS------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEcChhhcc------------------cccccccccccccccc------
Confidence 4689999999999999999999874 78999999643210 1123568899999873
Q ss_pred cHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcC
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFD 478 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~ 478 (958)
.+.+.....++|+|||+++......+ ...+..+++++++.+++.++++|+|+||.++++..... +
T Consensus 58 -~~~l~~al~~~d~vi~~~g~~~~~~~----~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~-----~----- 122 (205)
T d1hdoa_ 58 -AADVDKTVAGQDAVIVLLGTRNDLSP----TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV-----P----- 122 (205)
T ss_dssp -HHHHHHHHTTCSEEEECCCCTTCCSC----CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCS-----C-----
T ss_pred -hhhHHHHhcCCCEEEEEeccCCchhh----hhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCccc-----c-----
Confidence 46777888899999999986543322 35678999999999999999999999999887642110 0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHH
Q psy4557 479 DFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDF 558 (958)
Q Consensus 479 ~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~ 558 (958)
.....|...|+.+|++++. .|++++|+|||.+++...++... ...+......++.+++
T Consensus 123 ---~~~~~~~~~~~~~e~~l~~---~~~~~tiirp~~~~~~~~~~~~~----------------~~~~~~~~~~~i~~~D 180 (205)
T d1hdoa_ 123 ---PRLQAVTDDHIRMHKVLRE---SGLKYVAVMPPHIGDQPLTGAYT----------------VTLDGRGPSRVISKHD 180 (205)
T ss_dssp ---GGGHHHHHHHHHHHHHHHH---TCSEEEEECCSEEECCCCCSCCE----------------EESSSCSSCSEEEHHH
T ss_pred ---ccccccchHHHHHHHHHHh---cCCceEEEecceecCCCCcccEE----------------EeeCCCCCCCcCCHHH
Confidence 1123688999999998853 59999999999998765544321 1122334567899999
Q ss_pred HHHHHHHHhcCcCCCCceEEecC
Q psy4557 559 LTKSLVQLTTNVNNANKIYNFIN 581 (958)
Q Consensus 559 va~aiv~l~~~~~~~~~v~h~~n 581 (958)
+|++++.+..++...++.+.+..
T Consensus 181 vA~~~~~~l~~~~~~g~~~~~s~ 203 (205)
T d1hdoa_ 181 LGHFMLRCLTTDEYDGHSTYPSH 203 (205)
T ss_dssp HHHHHHHTTSCSTTTTCEEEEEC
T ss_pred HHHHHHHHhCCCCCCCEEEecCC
Confidence 99999999987766677776653
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.75 E-value=1.5e-18 Score=188.36 Aligned_cols=251 Identities=14% Similarity=0.103 Sum_probs=166.5
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
.+|||||||||+|++|+++|++++ .+|+|++|........ +.... ..+ ...+++++.||+..
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~-~~~~~-~~~--------~~~~v~~v~~d~~d------- 65 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNID-KVQML-LYF--------KQLGAKLIEASLDD------- 65 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHH-HHHHH-HHH--------HTTTCEEECCCSSC-------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCcccchh-HHHHH-hhh--------ccCCcEEEEeeccc-------
Confidence 479999999999999999999864 7899999976543221 11111 100 13578899999873
Q ss_pred HHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcCC
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFDD 479 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~ 479 (958)
.+........++.+||+++... ...|+.++.++++.|...+..++++.||.++++.... .
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~~------------~ 125 (312)
T d1qyda_ 66 HQRLVDALKQVDVVISALAGGV--------LSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIME------------H 125 (312)
T ss_dssp HHHHHHHHTTCSEEEECCCCSS--------SSTTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCC------------C
T ss_pred chhhhhhccCcchhhhhhhhcc--------cccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCcc------------c
Confidence 4677778889999999987532 2457788889999988887788888888665432110 1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHH
Q psy4557 480 FMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFL 559 (958)
Q Consensus 480 ~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~v 559 (958)
+..+...|..+|..+|..+ ...|++++++|++.++|+........ ...+.......-...+.+..++|++|+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~r~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv 199 (312)
T d1qyda_ 126 ALQPGSITFIDKRKVRRAI---EAASIPYTYVSSNMFAGYFAGSLAQL---DGHMMPPRDKVLIYGDGNVKGIWVDEDDV 199 (312)
T ss_dssp CCSSTTHHHHHHHHHHHHH---HHTTCCBCEEECCEEHHHHTTTSSCT---TCCSSCCSSEECCBTTSCSEEEEECHHHH
T ss_pred ccchhhhhhHHHHHHHHhh---cccccceEEeccceeecCCccchhhH---HHHhhhcccccccccccccccceeeHHHH
Confidence 1122334555555544432 34589999999999999754221110 00000000011112233467899999999
Q ss_pred HHHHHHHhcCcCCCCce-EEecCCCCCCHHHHHHHHHHc-CCC--ccccChHHHHHHHh
Q psy4557 560 TKSLVQLTTNVNNANKI-YNFINTNPIHIKTLVSVLNTY-GYN--IKTVPYEKWFHKLN 614 (958)
Q Consensus 560 a~aiv~l~~~~~~~~~v-~h~~n~~~~~~~~l~~~l~~~-g~~--~~~v~~~eW~~~~~ 614 (958)
|++++.++..+...++. |++.++..+|+.++++.+.+. |.+ +..+|.++|.....
T Consensus 200 a~a~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~~~~~~~~~~ 258 (312)
T d1qyda_ 200 GTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDFLADMK 258 (312)
T ss_dssp HHHHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSHHHHHHHT
T ss_pred HHHHHHHhcCccccCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECCHHHHHHHHH
Confidence 99999998877666665 556666789999999999764 655 45677777766543
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=99.74 E-value=6.2e-18 Score=197.04 Aligned_cols=119 Identities=24% Similarity=0.594 Sum_probs=112.6
Q ss_pred CCCCccccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q psy4557 7 SDYDAEGALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHK 86 (958)
Q Consensus 7 ~~~~~~~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k 86 (958)
.+||...||.++|+++|+++||++|+++ +++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 17 ~~~~~~~tl~~l~~~~a~~~Pd~~Al~~-~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~ 95 (514)
T d1amua_ 17 AEYPRDKTIHQLFEEQVSKRPNNVAIVC-ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLK 95 (514)
T ss_dssp CCCCTTCCHHHHHHHHHHHCTTSEEEEE-TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHhCCCCeEEEE-CCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 4577778999999999999999999997 568999999999999999999999999999999999999999999999999
Q ss_pred HCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhhh
Q psy4557 87 AGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126 (958)
Q Consensus 87 ~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 126 (958)
+|++++|+|+.++.+++.+++++++++++|++..+.+.+.
T Consensus 96 ~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~ 135 (514)
T d1amua_ 96 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIH 135 (514)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHT
T ss_pred hCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhh
Confidence 9999999999999999999999999999999988776554
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.73 E-value=4.9e-18 Score=183.07 Aligned_cols=247 Identities=15% Similarity=0.142 Sum_probs=166.1
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|||||||||+|+||+++|+++ +.+|+|++|.........+.... ... ....+.++.+|+..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~-G~~V~~l~R~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~d~~~------ 66 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLL-ESF--------KASGANIVHGSIDD------ 66 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCTTTTHHHHHHH-HHH--------HTTTCEEECCCTTC------
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEECCCccccchhHHHHH-Hhh--------ccCCcEEEEeeccc------
Confidence 368999999999999999999976 47899999987654333332211 111 12467888999873
Q ss_pred cHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcC
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFD 478 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~ 478 (958)
...+......++.|||+++.. |+.++.++++.+...+.++++|.|+........
T Consensus 67 -~~~~~~~~~~~~~vi~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~~~------------- 120 (307)
T d1qyca_ 67 -HASLVEAVKNVDVVISTVGSL------------QIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNV------------- 120 (307)
T ss_dssp -HHHHHHHHHTCSEEEECCCGG------------GSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSC-------------
T ss_pred -chhhhhhhhhceeeeeccccc------------ccchhhHHHHHHHHhccccceeeeccccccccc-------------
Confidence 355666778899999998753 344566777777777778888888754432110
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhC---CcCCCCCcCCccc
Q psy4557 479 DFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLG---YAPDIDWYLEFTP 555 (958)
Q Consensus 479 ~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g---~~P~~~~~~~~~p 555 (958)
........|...|...|.++. +.|++++|+||+.++|+......+.. ....+.+ .....+..++|++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~r~~~v~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~ 190 (307)
T d1qyca_ 121 HAVEPAKSVFEVKAKVRRAIE---AEGIPYTYVSSNCFAGYFLRSLAQAG-------LTAPPRDKVVILGDGNARVVFVK 190 (307)
T ss_dssp CCCTTHHHHHHHHHHHHHHHH---HHTCCBEEEECCEEHHHHTTTTTCTT-------CSSCCSSEEEEETTSCCEEEEEC
T ss_pred cccccccccccccccccchhh---ccCCCceecccceecCCCccchhhhh-------hhhhhcccceeeecccccccCCc
Confidence 000112245556666665543 45899999999999997643222110 0001111 1123346689999
Q ss_pred HHHHHHHHHHHhcCcCCCCc-eEEecCCCCCCHHHHHHHHHH-cCCCcc--ccChHHHHHHHhccC
Q psy4557 556 VDFLTKSLVQLTTNVNNANK-IYNFINTNPIHIKTLVSVLNT-YGYNIK--TVPYEKWFHKLNKRE 617 (958)
Q Consensus 556 VD~va~aiv~l~~~~~~~~~-v~h~~n~~~~~~~~l~~~l~~-~g~~~~--~v~~~eW~~~~~~~~ 617 (958)
||++|++++.+...+...++ +||+.++..+|+.|+++.+.+ .|.+++ .+|.++|.+.+....
T Consensus 191 v~Dva~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 256 (307)
T d1qyca_ 191 EEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTP 256 (307)
T ss_dssp HHHHHHHHHTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEECHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcChhhcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECCHHHHHHHHHhcC
Confidence 99999999999877655555 466677889999999999876 477654 778888887665433
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.72 E-value=4.1e-17 Score=175.72 Aligned_cols=221 Identities=18% Similarity=0.167 Sum_probs=147.3
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
+|||||||||||+||++.|++++ .++++.+.... +.+|+. +.
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g--~~v~~~~~~~~-----------------------------~~~Dl~-------~~ 43 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVG--NLIALDVHSKE-----------------------------FCGDFS-------NP 43 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTS--EEEEECTTCSS-----------------------------SCCCTT-------CH
T ss_pred EEEEECCCCHHHHHHHHHHHhCC--CEEEEECCCcc-----------------------------ccCcCC-------CH
Confidence 59999999999999999887654 34444432110 235654 33
Q ss_pred HHHHHHhc--ccCEEEEcccccCc---ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCC-CCcccccc
Q psy4557 401 DEYVSLSY--EIDMIIHAAAFVNL---ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSE-NFQEDYTV 474 (958)
Q Consensus 401 ~~~~~l~~--~vd~IiH~AA~v~~---~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~-~~~e~~~~ 474 (958)
+....+.+ ++|+|||+||.++. ..........|+.++.+|++.|...+ .+++|+||..+|+.... ++.|+
T Consensus 44 ~~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~~ss~~~~~~~~~~~~~E~--- 119 (298)
T d1n2sa_ 44 KGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG-AWVVHYSTDYVFPGTGDIPWQET--- 119 (298)
T ss_dssp HHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT-CEEEEEEEGGGSCCCTTCCBCTT---
T ss_pred HHHHHHHHHcCCCEEEEecccccccccccCccccccccccccccchhhhhccc-cccccccccccccCCCCCCCccc---
Confidence 45555543 56999999998754 23344567899999999999998877 57888999988875432 23332
Q ss_pred cCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc-CCCCCcCCc
Q psy4557 475 ADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA-PDIDWYLEF 553 (958)
Q Consensus 475 ~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~-P~~~~~~~~ 553 (958)
.+..+.+.|+.+|..+|..+..... ...++|++..++... .+....+ .+.+..-... .......++
T Consensus 120 ----~~~~p~~~y~~~k~~~e~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 186 (298)
T d1n2sa_ 120 ----DATSPLNVYGKTKLAGEKALQDNCP---KHLIFRTSWVYAGKG---NNFAKTM---LRLAKERQTLSVINDQYGAP 186 (298)
T ss_dssp ----SCCCCSSHHHHHHHHHHHHHHHHCS---SEEEEEECSEECSSS---CCHHHHH---HHHHHHCSEEEEECSCEECC
T ss_pred ----cccCCCchHhhhhhhhhhhHHhhhc---ccccccccceeeccC---Cccchhh---hhhhcccceeecccceeecc
Confidence 2234668899999999999876543 345677776665431 2222222 2222221111 112345788
Q ss_pred ccHHHHHHHHHHHhc---CcCCCCceEEecCCCCCCHHHHHHHHHH
Q psy4557 554 TPVDFLTKSLVQLTT---NVNNANKIYNFINTNPIHIKTLVSVLNT 596 (958)
Q Consensus 554 ~pVD~va~aiv~l~~---~~~~~~~v~h~~n~~~~~~~~l~~~l~~ 596 (958)
++++++++++..+.. .......+||++++..+++.++...+.+
T Consensus 187 ~~~~d~~~~~~~~i~~~~~~~~~~~~~n~~~~~~~~~~~~~~~i~~ 232 (298)
T d1n2sa_ 187 TGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFD 232 (298)
T ss_dssp EEHHHHHHHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHHHHH
T ss_pred cccchHHHHHHHHHhhhhccccccccccccCCCceecHHHHHHHHh
Confidence 999999998877653 2233568999999999999999887754
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.69 E-value=4.4e-19 Score=179.37 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=115.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
.+|+||+++||||++|||+++|+.|+++|++|++++|+.++++++.+++.+.. .+....+|+++.++++++ +
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~-------~ 90 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEA-------V 90 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHH-------T
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc-chhhhhhhcccHHHHHHH-------h
Confidence 57899999999999999999999999999999999999999999988886532 344677999998887654 4
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHH
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKY 871 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKa 871 (958)
+++|+||||||+. +...+.+.|++++++|+.+.++++..+.+.+......++++..++..+..+ .+...|+++|+
T Consensus 91 ~~iDilin~Ag~g----~~~~~~e~~~~~~~~nv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~g~~~y~~sk~ 165 (191)
T d1luaa1 91 KGAHFVFTAGAIG----LELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKGKEYGGKRAFGALG-IGGLKLKLHRA 165 (191)
T ss_dssp TTCSEEEECCCTT----CCCBCHHHHHTCTTCCEEEECCCSSSCSBTTCCTTCEEEEETTEEEECHHH-HHHHHHHHHHH
T ss_pred cCcCeeeecCccc----cccCCHHHHHhhhcceeehhHhhHHHHHHHhhhhccCcEEecceEEEeccC-cCcHHHHHHHH
Confidence 7899999999974 245688999999999998887765544433332222233332222222211 12346999999
Q ss_pred HHHHHHH
Q psy4557 872 FIEGISG 878 (958)
Q Consensus 872 a~~~l~~ 878 (958)
++..|++
T Consensus 166 a~~~l~~ 172 (191)
T d1luaa1 166 CIAKLFE 172 (191)
T ss_dssp HHHHHTS
T ss_pred HHHHHHh
Confidence 9988764
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=99.69 E-value=6.3e-17 Score=186.70 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=103.6
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeC-CCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeE
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDH-DGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGY 91 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~-~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~ 91 (958)
.|++++|+++|+++||++|+++. +++++||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 57999999999999999999874 35689999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHhhcCCeEEEEcccc
Q psy4557 92 LPLETSYPPALLESVLDDAKPSIVITKGEY 121 (958)
Q Consensus 92 vPln~~~~~~~l~~il~~~~~~~vi~~~~~ 121 (958)
+||||+++++++++++++++++++|++...
T Consensus 82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~ 111 (503)
T d3cw9a1 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGR 111 (503)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEESSCH
T ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeecch
Confidence 999999999999999999999999988653
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Probab=99.68 E-value=2.1e-17 Score=139.56 Aligned_cols=74 Identities=31% Similarity=0.586 Sum_probs=71.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCCCCCchhhcCccHHHHHHHHHHHHHHhCCCCChHHHhcCCcHHHHHHHHh
Q psy4557 199 DESMFQSQKNIAKIWCKILNLYTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLE 272 (958)
Q Consensus 199 ~~~~~~~e~~l~~iw~~vL~~~~i~~~~~FF~lGgdSL~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~la~~i~ 272 (958)
.+|.+++|+.|.++|+++|+.+.+++++|||++|||||++++++++|+++||+++++.++|+|||+++||++|.
T Consensus 2 ~~P~~~~E~~l~~i~~~vL~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~LA~~i~ 75 (76)
T d2gdwa1 2 VAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVA 75 (76)
T ss_dssp CCCCSHHHHHHHHHHHHHTTSSCCCTTTTSSTTTCTTHHHHHHHHHHHHTTSSCCTTHHHHHSCSHHHHHHHHS
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCCCCCCCHHHcCCChHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHhc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999985
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=8e-17 Score=188.18 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=104.4
Q ss_pred ccHHHHHHHHHHhCCCCeEEEeCCCceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCeEe
Q psy4557 13 GALHYMFRNQAKRTPDKIAVVDHDGRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGGYL 92 (958)
Q Consensus 13 ~~l~~~~~~~a~~~pd~~Al~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v~v 92 (958)
.|++++|+++|+++||++|+++. ++++||+||+++++++|++|++.|+++||||+++++|++++++++|||+++|+++|
T Consensus 25 ~tl~~~l~~~a~~~pd~~Al~~~-~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~v 103 (536)
T d1mdba_ 25 ETFGDLLRDRAAKYGDRIAITCG-NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPV 103 (536)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET-TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC-CEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEE
Confidence 58999999999999999999974 67899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEEcccch
Q psy4557 93 PLETSYPPALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 93 Pln~~~~~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
||||+++.+++.++|++++++++++++...
T Consensus 104 pl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 133 (536)
T d1mdba_ 104 FALPSHRSSEITYFCEFAEAAAYIIPDAYS 133 (536)
T ss_dssp ECCTTCCHHHHHHHHHHTTCSEEEEESEET
T ss_pred ecCCCCCHHHHHHHHHhhccceEeccchhh
Confidence 999999999999999999999999987654
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=5.3e-16 Score=181.51 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=107.8
Q ss_pred CCccccHHHHHHHHHHhCCCCeEEEeCCC---ceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHH
Q psy4557 9 YDAEGALHYMFRNQAKRTPDKIAVVDHDG---RSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIH 85 (958)
Q Consensus 9 ~~~~~~l~~~~~~~a~~~pd~~Al~~~~~---~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~ 85 (958)
++...+|.++|+++++++||++|+++..+ +++||+||+++++++|++|.+.|+++||||+|+++|++++++++|||+
T Consensus 7 ~~~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 86 (534)
T d1v25a_ 7 MDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVP 86 (534)
T ss_dssp CCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 44445799999999999999999986332 369999999999999999999999999999999999999999999999
Q ss_pred HHCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhhh
Q psy4557 86 KAGGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRLE 126 (958)
Q Consensus 86 k~G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 126 (958)
++|+++||+||.++.++++++|+++++++++++........
T Consensus 87 ~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~ 127 (534)
T d1v25a_ 87 GMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 127 (534)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred HhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHH
Confidence 99999999999999999999999999999999987765543
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=99.61 E-value=8e-16 Score=179.88 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=104.8
Q ss_pred cccHHHHHHHHHHhC---CCCeEEEeCC-CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHH
Q psy4557 12 EGALHYMFRNQAKRT---PDKIAVVDHD-GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKA 87 (958)
Q Consensus 12 ~~~l~~~~~~~a~~~---pd~~Al~~~~-~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~ 87 (958)
..+++++|.+.+++| |+++|+.+.+ ++++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 16 ~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~ 95 (541)
T d1lcia_ 16 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 95 (541)
T ss_dssp SSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 367899998888777 8888988643 468999999999999999999999999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcccchhhh
Q psy4557 88 GGGYLPLETSYPPALLESVLDDAKPSIVITKGEYMDRL 125 (958)
Q Consensus 88 G~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 125 (958)
|+++||+|+.++.+++.++|++++++++|+++++.+.+
T Consensus 96 G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T d1lcia_ 96 GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 133 (541)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred CeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccc
Confidence 99999999999999999999999999999998776554
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=1.2e-15 Score=182.76 Aligned_cols=108 Identities=29% Similarity=0.315 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhCCCCeEEEeC-----CCceeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCCHHHHHHHHHHHHHC
Q psy4557 15 LHYMFRNQAKRTPDKIAVVDH-----DGRSITFKQLDEWTDIVGTYLI-NQGCIVGSTVGVLMERCLEWTISYIAIHKAG 88 (958)
Q Consensus 15 l~~~~~~~a~~~pd~~Al~~~-----~~~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G 88 (958)
....++++|+++||++|+++. .++++||+||.++++++|++|+ ++||++||||+|+++|++++++++|||+++|
T Consensus 61 ~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~G 140 (640)
T d1ry2a_ 61 CYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIG 140 (640)
T ss_dssp HHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCc
Confidence 477889999999999999852 2358999999999999999997 6799999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHHhhcCCeEEEEcccch
Q psy4557 89 GGYLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 89 ~v~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
+++||+|+.++++++.++++++++++++++....
T Consensus 141 av~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 174 (640)
T d1ry2a_ 141 AIHSVVFAGFSSNSLRDRINDGDSKVVITTDESN 174 (640)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCC
T ss_pred eEeecCCCCCCHHHHHHHHHhhhccccccchhhh
Confidence 9999999999999999999999999999987654
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=99.59 E-value=1.2e-15 Score=182.84 Aligned_cols=107 Identities=17% Similarity=0.260 Sum_probs=99.0
Q ss_pred HHHHHHHHHhCCCCeEEEeCC-----CceeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHHHCCe
Q psy4557 16 HYMFRNQAKRTPDKIAVVDHD-----GRSITFKQLDEWTDIVGTYLINQGCIVGSTVGVLMERCLEWTISYIAIHKAGGG 90 (958)
Q Consensus 16 ~~~~~~~a~~~pd~~Al~~~~-----~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~k~G~v 90 (958)
...++++++.+||++|+++.+ .+++||+||.++++++|++|+++|+++||||+++++|++++++++|||+++|++
T Consensus 75 ~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav 154 (643)
T d1pg4a_ 75 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 154 (643)
T ss_dssp HHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeE
Confidence 556778888999999998521 257999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeEEEEcccch
Q psy4557 91 YLPLETSYPPALLESVLDDAKPSIVITKGEYM 122 (958)
Q Consensus 91 ~vPln~~~~~~~l~~il~~~~~~~vi~~~~~~ 122 (958)
++|+++.++++++.++++++++++||+++.+.
T Consensus 155 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~ 186 (643)
T d1pg4a_ 155 HSVIFGGFSPEAVAGCIIDSSSRLVITADEGV 186 (643)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEESEEE
T ss_pred EEecCCCCCHHHHHHHHHhcCCCEEEEcchhh
Confidence 99999999999999999999999999987654
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.50 E-value=2.1e-14 Score=158.73 Aligned_cols=238 Identities=13% Similarity=0.058 Sum_probs=156.5
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.++|||||||||+|++|+++|+++ +.+|+|++|..+..... .+ . ....++++.||+..+
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~-G~~V~~l~R~~~~~~~~-~~----~----------~~~~v~~~~gD~~d~----- 61 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAV-GHHVRAQVHSLKGLIAE-EL----Q----------AIPNVTLFQGPLLNN----- 61 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCSCSHHHH-HH----H----------TSTTEEEEESCCTTC-----
T ss_pred CCEEEEECCChHHHHHHHHHHHhC-CCeEEEEECCcchhhhh-hh----c----------ccCCCEEEEeeCCCc-----
Confidence 478999999999999999999976 57899999976543221 11 0 125789999998742
Q ss_pred cHHHHHHHhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCCCCCCcccccccCcC
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPSTSENFQEDYTVADFD 478 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~ 478 (958)
.+.+..+...+|.+++..... ...|+..++++++.|...+++++++.||.......
T Consensus 62 -~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~-------------- 117 (350)
T d1xgka_ 62 -VPLMDTLFEGAHLAFINTTSQ---------AGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLY-------------- 117 (350)
T ss_dssp -HHHHHHHHTTCSEEEECCCST---------TSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGT--------------
T ss_pred -HHHHHHHhcCCceEEeecccc---------cchhhhhhhHHHHHHHHhCCCceEEEeeccccccC--------------
Confidence 345667778889988775431 23578889999999998888888888886533211
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcC-CCCCcCCccc-H
Q psy4557 479 DFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAP-DIDWYLEFTP-V 556 (958)
Q Consensus 479 ~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P-~~~~~~~~~p-V 556 (958)
.......|..+|...|.++. +.+++++++|++..+++............ ........ ...| +.+..+.++. +
T Consensus 118 -~~~~~~~~~~~k~~~~~~~~---~~~~~~~~vr~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~~~ 191 (350)
T d1xgka_ 118 -GPWPAVPMWAPKFTVENYVR---QLGLPSTFVYAGIYNNNFTSLPYPLFQME-LMPDGTFE-WHAPFDPDIPLPWLDAE 191 (350)
T ss_dssp -SSCCCCTTTHHHHHHHHHHH---TSSSCEEEEEECEEGGGCBSSSCSSCBEE-ECTTSCEE-EEESSCTTSCEEEECHH
T ss_pred -CcccchhhhhhHHHHHHHHH---hhccCceeeeeceeecccccccccccccc-ccccccce-eeecccCCCcceEEEeH
Confidence 01223568899998887754 34799999999988775432221110000 00000000 0112 1223455555 4
Q ss_pred HHHHHHHHHHhcCc--CCCCceEEecCCCCCCHHHHHHHHHH-cCCCc--cccChHH
Q psy4557 557 DFLTKSLVQLTTNV--NNANKIYNFINTNPIHIKTLVSVLNT-YGYNI--KTVPYEK 608 (958)
Q Consensus 557 D~va~aiv~l~~~~--~~~~~v~h~~n~~~~~~~~l~~~l~~-~g~~~--~~v~~~e 608 (958)
|++++++..+.... ...+++|++.++ .+|+.|+.+.+.+ .|.++ ..+|..+
T Consensus 192 ~Dva~~v~~~l~~~~~~~~G~~~~~~g~-~~T~~eia~~l~~~~G~~v~~~~vp~~~ 247 (350)
T d1xgka_ 192 HDVGPALLQIFKDGPQKWNGHRIALTFE-TLSPVQVCAAFSRALNRRVTYVQVPKVE 247 (350)
T ss_dssp HHHHHHHHHHHHHCHHHHTTCEEEECSE-EECHHHHHHHHHHHHTSCEEEEECSSCC
T ss_pred HHHHHHHHHHHhCChhhcCCeEEEEeCC-cCCHHHHHHHHHHHHCCcceEEECCHHH
Confidence 88999988877532 235789999875 6899999999975 47664 3455443
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=9.4e-13 Score=145.68 Aligned_cols=212 Identities=16% Similarity=0.150 Sum_probs=143.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh-----hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-----DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~-----~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.|+||||||+|=||..++++|.++|+.|++++|.. ++++.+..+......++.++++|++|.++++++++..
T Consensus 1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (357)
T d1db3a_ 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV--- 77 (357)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH---
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhcc---
Confidence 48999999999999999999999999999999854 3344444433334457889999999999998887754
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc--C---------C
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV--R---------P 859 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~--~---------~ 859 (958)
.+|+++|+|+...... +.++....+++|+.|+..++.++...- .+...++|++||.+-. . +
T Consensus 78 --~~d~v~h~aa~~~~~~----~~~~~~~~~~~Nv~gt~nllea~~~~~--~~~~~r~i~~SS~~vYG~~~~~~~~E~~~ 149 (357)
T d1db3a_ 78 --QPDEVYNLGAMSHVAV----SFESPEYTADVDAMGTLRLLEAIRFLG--LEKKTRFYQASTSELYGLVQEIPQKETTP 149 (357)
T ss_dssp --CCSEEEECCCCCTTTT----TTSCHHHHHHHHTHHHHHHHHHHHHTT--CTTTCEEEEEEEGGGGTTCCSSSBCTTSC
T ss_pred --CCCEEEEeecccccch----hhhCHHHHHHHHHHHHHHHHHHHHHhC--CCCCcEEEEEEchhhhCCCCCCCcCCCCC
Confidence 5899999999865332 223345688999999999988775422 1234589999986522 1 1
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhh-h-------c--cc-----cCCCC
Q psy4557 860 FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDK-Y-------D--IS-----KAVPV 924 (958)
Q Consensus 860 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~-~-------~--~~-----~~~~~ 924 (958)
......|+.||.+.+.+.+.++..+ |+.+..+.|+.|..|............. . . .. .....
T Consensus 150 ~~P~~~Y~~sK~~~E~~~~~~~~~~---~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~ 226 (357)
T d1db3a_ 150 FYPRSPYAVAKLYAYWITVNYRESY---GMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDW 226 (357)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecc
Confidence 1235679999999999999888775 6888999998888775332211111100 0 0 00 01125
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy4557 925 LTTKEISQSIIFALLQP 941 (958)
Q Consensus 925 ~~p~~ia~~i~~~l~~~ 941 (958)
...+|++++++.++..+
T Consensus 227 ~~v~D~~~a~~~~~~~~ 243 (357)
T d1db3a_ 227 GHAKDYVKMQWMMLQQE 243 (357)
T ss_dssp EEHHHHHHHHHHTTSSS
T ss_pred eeechHHHHHHHHHhCC
Confidence 67899999999876554
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=6.5e-12 Score=127.37 Aligned_cols=190 Identities=17% Similarity=0.168 Sum_probs=125.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
|..|.++||||||+||.+++++|+++|+.|.++.|+.+++... ....+.++.+|+++.+++.++++ .
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~~~~~~gD~~d~~~l~~al~-------~ 67 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE------GPRPAHVVVGDVLQAADVDKTVA-------G 67 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS------SCCCSEEEESCTTSHHHHHHHHT-------T
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc------cccccccccccccchhhHHHHhc-------C
Confidence 3568899999999999999999999999999999998765421 12346788999999988766543 5
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCC----ChhhhHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAG----LAVYTGT 869 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~----~~~Y~as 869 (958)
.|++|+++|........ +++..++.. ++..+.+. +-.++|++||.......+. ...|...
T Consensus 68 ~d~vi~~~g~~~~~~~~-----------~~~~~~~~~----l~~aa~~~-~v~r~i~~ss~~~~~~~~~~~~~~~~~~~~ 131 (205)
T d1hdoa_ 68 QDAVIVLLGTRNDLSPT-----------TVMSEGARN----IVAAMKAH-GVDKVVACTSAFLLWDPTKVPPRLQAVTDD 131 (205)
T ss_dssp CSEEEECCCCTTCCSCC-----------CHHHHHHHH----HHHHHHHH-TCCEEEEECCGGGTSCTTCSCGGGHHHHHH
T ss_pred CCEEEEEeccCCchhhh-----------hhhHHHHHH----HHHHHHhc-CCCeEEEEeeeeccCCCccccccccccchH
Confidence 79999999975332111 122333333 34444432 3469999998765443322 2345555
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 870 KYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 870 Kaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|...+.+ +...|++.+.|.||.+...-.... ............++..+|+|+.++..+.+|..
T Consensus 132 ~~~~e~~-------l~~~~~~~tiirp~~~~~~~~~~~----~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~ 194 (205)
T d1hdoa_ 132 HIRMHKV-------LRESGLKYVAVMPPHIGDQPLTGA----YTVTLDGRGPSRVISKHDLGHFMLRCLTTDEY 194 (205)
T ss_dssp HHHHHHH-------HHHTCSEEEEECCSEEECCCCCSC----CEEESSSCSSCSEEEHHHHHHHHHHTTSCSTT
T ss_pred HHHHHHH-------HHhcCCceEEEecceecCCCCccc----EEEeeCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 6555433 234689999999998854321110 00001111223457899999999998887763
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.29 E-value=3.9e-11 Score=131.52 Aligned_cols=211 Identities=16% Similarity=0.170 Sum_probs=144.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhh--cCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ--NAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~--~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
-.||+|+||||+|=||..++++|.++|++|+.+.|+.++...+..... ........+..|+++.+++.+++
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~------- 81 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVI------- 81 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTT-------
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhc-------
Confidence 469999999999999999999999999999999999877766654332 22233445678999988765443
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-CC---------
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP-FA--------- 861 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~-~~--------- 861 (958)
...|+++++|+.... ..+ ....+.+|+.|+..+++.+.. .+.-.++|++||.++... .+
T Consensus 82 ~~~~~v~~~a~~~~~----~~~---~~~~~~~nv~gt~~ll~~~~~----~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e 150 (342)
T d1y1pa1 82 KGAAGVAHIASVVSF----SNK---YDEVVTPAIGGTLNALRAAAA----TPSVKRFVLTSSTVSALIPKPNVEGIYLDE 150 (342)
T ss_dssp TTCSEEEECCCCCSC----CSC---HHHHHHHHHHHHHHHHHHHHT----CTTCCEEEEECCGGGTCCCCTTCCCCEECT
T ss_pred ccchhhhhhcccccc----ccc---ccccccchhhhHHHHHHhhhc----ccccccccccccceeeccCCCCCCCccccc
Confidence 357999999987532 122 345678899998887776532 333469999999754221 11
Q ss_pred ---------------------CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhh----hhhh
Q psy4557 862 ---------------------GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDV----VDKY 916 (958)
Q Consensus 862 ---------------------~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~----~~~~ 916 (958)
....|+.||.+.+.+++.+++..+ .++++.+|+|+.+--+.......... ....
T Consensus 151 ~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l 229 (342)
T d1y1pa1 151 KSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENK-PHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSL 229 (342)
T ss_dssp TCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHH
T ss_pred cccccccccccccccccCCCCCcCcccchhHhHHHHHHHhhhhcc-cccccceecccceeCCCCCccccccchHHHHHHH
Confidence 123599999999999998888764 56888899998775543222111100 0000
Q ss_pred ---------ccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 917 ---------DISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 917 ---------~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
..........++|+|++++..+..+..
T Consensus 230 ~~g~~~~~~~~~~~~~~v~v~Dva~~~i~~l~~~~~ 265 (342)
T d1y1pa1 230 FNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQI 265 (342)
T ss_dssp HTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHCTTC
T ss_pred HcCCcCcccCCccceeeeeHHHHHHHHHHhhcCccc
Confidence 000111246789999998887766543
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.17 E-value=1.4e-10 Score=121.86 Aligned_cols=205 Identities=20% Similarity=0.185 Sum_probs=135.0
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+.++||||||+|-||..+.+.|++++..+|+.+.|...+.+..+.+.+.+.. ...++.++.+|++.
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~---------~g~~v~~~~~Dv~d----- 73 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEA---------LGARTTVAACDVTD----- 73 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHH---------TTCEEEEEECCTTC-----
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHh---------ccccccccccccch-----
Confidence 4568999999999999999999988655676667753332222333222222 23578899999874
Q ss_pred CcHHHHHHHhc------ccCEEEEcccccCccc----C---hHHHHhhhHHHHHHHHHhhccCCCccEEEEecccccCCC
Q psy4557 398 KNQDEYVSLSY------EIDMIIHAAAFVNLIL----P---YNALYKSNVLATKNLIEFSFLNKIKSFHYVSTDSIYPST 464 (958)
Q Consensus 398 ~~~~~~~~l~~------~vd~IiH~AA~v~~~~----~---~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST~~v~~~~ 464 (958)
.+....+.. .+|.|||+|+...... + +.....+|+.|+.++.++....+...++++||++..-..
T Consensus 74 --~~~~~~~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~ 151 (259)
T d2fr1a1 74 --RESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGA 151 (259)
T ss_dssp --HHHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCC
T ss_pred --HHHHHHhhccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCC
Confidence 345555543 4789999999754321 1 334567899999999998877666789999987653211
Q ss_pred CCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHhhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCc
Q psy4557 465 SENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAGQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYA 544 (958)
Q Consensus 465 ~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~ 544 (958)
.....|+.||..-|.+.+..+..|++++.+.||.+.+.. .... . +.......|
T Consensus 152 -----------------~~~~~YaAaka~l~~la~~~~~~Gi~v~~I~pg~~~~~g---~~~~-~----~~~~~~~~G-- 204 (259)
T d2fr1a1 152 -----------------PGLGGYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGSG---MAEG-P----VADRFRRHG-- 204 (259)
T ss_dssp -----------------TTCTTTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC--------------------CTTTT--
T ss_pred -----------------cccHHHHHHHHhHHHHHHHHHhCCCCEEECCCCcccCCc---cccc-h----HHHHHHhcC--
Confidence 112469999999999988777889999999999886532 1110 0 000001112
Q ss_pred CCCCCcCCcccHHHHHHHHHHHhcCcC
Q psy4557 545 PDIDWYLEFTPVDFLTKSLVQLTTNVN 571 (958)
Q Consensus 545 P~~~~~~~~~pVD~va~aiv~l~~~~~ 571 (958)
+..++.+.+++++..+..+..
T Consensus 205 ------~~~~~~~~~~~~l~~~l~~~~ 225 (259)
T d2fr1a1 205 ------VIEMPPETACRALQNALDRAE 225 (259)
T ss_dssp ------EECBCHHHHHHHHHHHHHTTC
T ss_pred ------CCCCCHHHHHHHHHHHHhCCC
Confidence 234678889999888775543
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.16 E-value=2.9e-10 Score=123.83 Aligned_cols=215 Identities=14% Similarity=0.112 Sum_probs=145.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh-----hHHHHHHHhhc-CCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-----RLENLKTSLQN-APGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~-----~l~~~~~~l~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
|++|||||||=||..++++|+++|+.|+.++|..+ ++..+...... ....+.++.+|+++.+++.+.++..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~--- 78 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI--- 78 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH---
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhh---
Confidence 89999999999999999999999999999998532 23322222111 1245778899999999888777643
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC----------C
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP----------F 860 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~----------~ 860 (958)
++|++||+|+..... ...+.-...+++|..|+..+..++...........++++.||...... .
T Consensus 79 --~~D~Vih~Aa~~~~~----~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~E~~~~ 152 (339)
T d1n7ha_ 79 --KPDEVYNLAAQSHVA----VSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPF 152 (339)
T ss_dssp --CCSEEEECCSCCCHH----HHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCC
T ss_pred --ccchhhhcccccccc----ccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCCCCCCCC
Confidence 789999999975322 122344678899999999988877655443333456666666543221 1
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhh----h-h-cc-----c----cCCCCC
Q psy4557 861 AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVD----K-Y-DI-----S----KAVPVL 925 (958)
Q Consensus 861 ~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~----~-~-~~-----~----~~~~~~ 925 (958)
.....|+.+|.+.+.+++..++.. |+.+.++.|+.|.-|............ . . .. . ....++
T Consensus 153 ~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~ 229 (339)
T d1n7ha_ 153 HPRSPYAASKCAAHWYTVNYREAY---GLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWG 229 (339)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECE
T ss_pred CCcchhhHHHHHHHHHHHHHHHHh---CCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccce
Confidence 235679999999999998888764 699999999888766432211111110 0 0 00 0 011246
Q ss_pred CHHHHHHHHHHHhcCCCC
Q psy4557 926 TTKEISQSIIFALLQPSH 943 (958)
Q Consensus 926 ~p~~ia~~i~~~l~~~~~ 943 (958)
..+|+|.+++.++..+..
T Consensus 230 ~v~D~a~~~~~~~~~~~~ 247 (339)
T d1n7ha_ 230 FAGDYVEAMWLMLQQEKP 247 (339)
T ss_dssp EHHHHHHHHHHHHTSSSC
T ss_pred eeehHHHHHHHHHhcCCC
Confidence 689999999998887654
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=2.8e-12 Score=107.59 Aligned_cols=67 Identities=19% Similarity=0.337 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCC---CCCCCCCchhhcCccHHHHHHHHHHHHHHhCCCCChHHHhcCCcHHHHHHHH
Q psy4557 204 QSQKNIAKIWCKILNL---YTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271 (958)
Q Consensus 204 ~~e~~l~~iw~~vL~~---~~i~~~~~FF~lGgdSL~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~la~~i 271 (958)
++|+.|.++|+++|++ +.|+++++||++|+|||+++++.++|+++||+++++.+++ ++|+.+|++..
T Consensus 4 ~~e~~l~~~va~~Lgi~~~~~I~~~~~f~~lG~DSl~a~el~~~i~~~~g~~l~~~~l~-~~Ti~~L~el~ 73 (76)
T d2pnga1 4 EAQRDLVKAVAHILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLVLPIREVR-QLTLRKLQEMS 73 (76)
T ss_dssp SCCCCGGGTHHHHHTCSSCTTSCSSSCHHHHTCSSHHHHHHHHHHHHHTCCCCCHHHHT-TCCSHHHHHTS
T ss_pred HHHHHHHHHHHHHhccCCHhhCCCCCCHHHhCCcHHHHHHHHHHHHHHhCCCCCHHHHH-HhhHHHHHHHH
Confidence 3466788999999997 3699999999999999999999999999999999999998 59999998764
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.14 E-value=7.1e-10 Score=123.60 Aligned_cols=174 Identities=13% Similarity=0.021 Sum_probs=125.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh----------------hHHHHHHHhh-cCCCcEEEEEecCCCHH
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID----------------RLENLKTSLQ-NAPGSIIVKKLDVTIEN 778 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~----------------~l~~~~~~l~-~~~~~~~~~~~Dvs~~~ 778 (958)
||.++||||+|=||..++++|+++|+.|++++.-.. ...+...... ..+.++.++.+|++|.+
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 789999999999999999999999999999862110 1111111111 11345788899999999
Q ss_pred HHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC
Q psy4557 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR 858 (958)
Q Consensus 779 ~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~ 858 (958)
.++++++.. ++|++||.|+.... .....+.+.....+++|+.|+..++..+.. .+....+++.||.....
T Consensus 81 ~l~~~~~~~-----~~d~ViHlAa~~~~-~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~----~~~~~~~i~~ss~~~~~ 150 (393)
T d1i24a_ 81 FLAESFKSF-----EPDSVVHFGEQRSA-PYSMIDRSRAVYTQHNNVIGTLNVLFAIKE----FGEECHLVKLGTMGEYG 150 (393)
T ss_dssp HHHHHHHHH-----CCSEEEECCSCCCH-HHHTSCHHHHHHHHHHHHHHHHHHHHHHHH----HCTTCEEEEECCGGGGC
T ss_pred HHHHHHHhh-----cchheecccccccc-ccccccccccccccccccccccHHHHHHHH----hccccceeecccccccc
Confidence 998887754 69999999987532 223345677788999999999998887643 23345778888765431
Q ss_pred C------------------------CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCC
Q psy4557 859 P------------------------FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTE 902 (958)
Q Consensus 859 ~------------------------~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~ 902 (958)
. ......|+.||.+.+.+.+.++.+. |+++.++.|+.+.-+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~---~l~~~~lR~~~v~G~ 215 (393)
T d1i24a_ 151 TPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 215 (393)
T ss_dssp CCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECS
T ss_pred ccccccccccccccccccccccccccccccHHHHHhhhhccccccccccc---ceeeeecccccccCC
Confidence 1 1223469999999999998887765 688888888777654
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.13 E-value=2.6e-10 Score=123.31 Aligned_cols=209 Identities=17% Similarity=0.099 Sum_probs=140.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh--HHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR--LENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~--l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
|.||||||+|-||..++++|+++|+.|+.++|.... ...+. .+. ...++.++.+|++|.+++.+.+... ..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~-~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~ 73 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLR-ELG-IEGDIQYEDGDMADACSVQRAVIKA-----QP 73 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHH-HTT-CGGGEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHH-Hhc-ccCCcEEEEccccChHHhhhhhccc-----cc
Confidence 789999999999999999999999999999987532 12221 221 2346889999999998887666543 46
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc--C---------CCCCC
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV--R---------PFAGL 863 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~--~---------~~~~~ 863 (958)
++++++|+........ +.....+.+|+.|+..++.++.. .+...++++.||.+-. . +....
T Consensus 74 ~~~~~~a~~~~~~~~~----~~~~~~~~~n~~g~~~~l~~~~~----~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~~p~ 145 (321)
T d1rpna_ 74 QEVYNLAAQSFVGASW----NQPVTTGVVDGLGVTHLLEAIRQ----FSPETRFYQASTSEMFGLIQAERQDENTPFYPR 145 (321)
T ss_dssp SEEEECCSCCCHHHHT----TSHHHHHHHHTHHHHHHHHHHHH----HCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCC
T ss_pred cccccccccccccccc----cchHHHHhhhhhchHHHHHHHHH----hCCCcccccccchhhcCcccCCCCCCCCCcccc
Confidence 7888888765332111 22457889999999998877644 2334577777765422 1 11235
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhh----hh--hcc------ccC---CCCCCHH
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVV----DK--YDI------SKA---VPVLTTK 928 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~----~~--~~~------~~~---~~~~~p~ 928 (958)
..|+.+|.+.+.+.+.++.+. |+.+.++.|+.+.-|........... .. ... ... ..++..+
T Consensus 146 ~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~ 222 (321)
T d1rpna_ 146 SPYGVAKLYGHWITVNYRESF---GLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAG 222 (321)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHH
T ss_pred ChhHHHHHHHHHHHHHHHhhc---CCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeH
Confidence 679999999999999888775 57888888877766543222111110 00 000 000 1256889
Q ss_pred HHHHHHHHHhcCCCC
Q psy4557 929 EISQSIIFALLQPSH 943 (958)
Q Consensus 929 ~ia~~i~~~l~~~~~ 943 (958)
|+|++++.++.++..
T Consensus 223 D~~~~~~~~~~~~~~ 237 (321)
T d1rpna_ 223 DYVEAMWLMLQQDKA 237 (321)
T ss_dssp HHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHhcCCc
Confidence 999999998877654
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=3.9e-10 Score=123.33 Aligned_cols=212 Identities=17% Similarity=0.147 Sum_probs=140.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh-----hHHHHHHHhh-cCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-----RLENLKTSLQ-NAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~-----~l~~~~~~l~-~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
|+||||||+|=||..++++|.++|+.|+.++|..+ +++.+..... .....+.++.+|++|.+.+.+++...
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 78 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV--- 78 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH---
T ss_pred CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc---
Confidence 55699999999999999999999999999998643 2232222211 11245789999999999988777654
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----------C
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-----------P 859 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-----------~ 859 (958)
.++++++.|+..... .+.+.....+++|+.|+..++.++...-. ....++|++||.+-.- +
T Consensus 79 --~~~~v~~~~a~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~--~~~~~~i~~SS~~vyg~~~~~~~~E~~~ 150 (347)
T d1t2aa_ 79 --KPTEIYNLGAQSHVK----ISFDLAEYTADVDGVGTLRLLDAVKTCGL--INSVKFYQASTSELYGKVQEIPQKETTP 150 (347)
T ss_dssp --CCSEEEECCSCCCHH----HHHHSHHHHHHHHTHHHHHHHHHHHHTTC--TTTCEEEEEEEGGGTCSCSSSSBCTTSC
T ss_pred --ccceeeeeeeccccc----hhhccchhhhhhHHHHHHHHHHHHHHcCC--CCCcEEEEecchheecCCCCCCCCCCCC
Confidence 578888888865322 12334456789999999998887754332 2235899999876321 1
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh-hh----hhhh-c---c--c----cCCCC
Q psy4557 860 FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR-DV----VDKY-D---I--S----KAVPV 924 (958)
Q Consensus 860 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~-~~----~~~~-~---~--~----~~~~~ 924 (958)
......|+.||.+.+.+.+.++..+ |+.+..+.|+.+.-|-....... .. .... . . . .....
T Consensus 151 ~~P~~~Yg~sK~~aE~~~~~~~~~~---~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~ 227 (347)
T d1t2aa_ 151 FYPRSPYGAAKLYAYWIVVNFREAY---NLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDW 227 (347)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeee
Confidence 1124579999999999998887764 68888888877766532211110 00 0000 0 0 0 01135
Q ss_pred CCHHHHHHHHHHHhcCCC
Q psy4557 925 LTTKEISQSIIFALLQPS 942 (958)
Q Consensus 925 ~~p~~ia~~i~~~l~~~~ 942 (958)
+..+|++.+++.++....
T Consensus 228 i~v~D~~~a~~~~~~~~~ 245 (347)
T d1t2aa_ 228 GHAKDYVEAMWLMLQNDE 245 (347)
T ss_dssp EEHHHHHHHHHHHHHSSS
T ss_pred eEecHHHHHHHHHhhcCC
Confidence 788999999999876543
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=3.2e-10 Score=124.24 Aligned_cols=168 Identities=21% Similarity=0.220 Sum_probs=119.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh-hhHHHHH--HHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI-DRLENLK--TSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~-~~l~~~~--~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.|++|||||+|=||..++++|+++|++|+++++.. ....... +.+. ...+.++.+|++|.++++.+++. +
T Consensus 1 ~K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~----~- 73 (347)
T d1z45a2 1 SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKE----Y- 73 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHH----S-
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhc--ccCCeEEEeecCCHHHHHHHHhc----c-
Confidence 48999999999999999999999999999986532 1112111 2222 23467788999999998877653 2
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC--------------
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-------------- 858 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-------------- 858 (958)
++|++||+|+...... ..+.-.....+|+.|+..+..++...- -.++|++||....-
T Consensus 74 ~~d~VihlAa~~~~~~----~~~~~~~~~~~N~~~t~~ll~~~~~~~-----i~~~i~~SS~~vyg~~~~~~~~~~~~e~ 144 (347)
T d1z45a2 74 KIDSVIHFAGLKAVGE----STQIPLRYYHNNILGTVVLLELMQQYN-----VSKFVFSSSATVYGDATRFPNMIPIPEE 144 (347)
T ss_dssp CCCEEEECCSCCCHHH----HHHSHHHHHHHHHHHHHHHHHHHHHHT-----CCEEEEEEEGGGGCCGGGSTTCCSBCTT
T ss_pred CCCEEEEccccccccc----cccCcccccccchhhhHHHHHHHHhcc-----cceEEeecceeeecCcccCCCCCccccc
Confidence 5899999999763221 122335778899999999888875422 24899999966431
Q ss_pred -CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCccc
Q psy4557 859 -PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVK 900 (958)
Q Consensus 859 -~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~ 900 (958)
+......|+.||.+.+.+.+.+.... ..++.+..+.|+.+-
T Consensus 145 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~~~~lR~~~v~ 186 (347)
T d1z45a2 145 CPLGPTNPYGHTKYAIENILNDLYNSD-KKSWKFAILRYFNPI 186 (347)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHHHHHS-TTSCEEEEEEECEEE
T ss_pred cCCCCCChhHhHHHHHHHHHHHHHHhh-ccCCcEEEEeecceE
Confidence 11234579999999999988877553 456777777765444
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.12 E-value=1.2e-10 Score=119.93 Aligned_cols=205 Identities=19% Similarity=0.129 Sum_probs=128.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCe--EEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAK--VVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~--Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
++|+||||+|.||+++++.|+++|+. |+...|+.++...+ ..++..+.+|+++.+++.+++ ..+
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~-------~~~ 69 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-------GGEADVFIGDITDADSINPAF-------QGI 69 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-------TCCTTEEECCTTSHHHHHHHH-------TTC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-------cCCcEEEEeeecccccccccc-------ccc
Confidence 68999999999999999999999965 55567887654432 234567889999998876554 358
Q ss_pred cEEEEccccCCCcc---------ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChh
Q psy4557 795 DILVNNAGVMYFTL---------MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAV 865 (958)
Q Consensus 795 DilInnAG~~~~~~---------~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~ 865 (958)
|.+||+|+...... ........+.....+|+.|+..+....... ..+...+.++.....+......
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~ 144 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-----GVKHIVVVGSMGGTNPDHPLNK 144 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-----TCSEEEEEEETTTTCTTCGGGG
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc-----cccccccccccccCCCCccccc
Confidence 99999998753211 111112345567788999988777655443 2367777777666554333332
Q ss_pred hhHHHH-HHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 866 YTGTKY-FIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYDISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 866 Y~asKa-a~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
|..++. ........+. ...|+++.++.||.+..+.....................++..+|+|++++.++.+|..
T Consensus 145 ~~~~~~~~~~~~~~~~~---~~~~~~~~ilRp~~v~g~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~a~~~~l~~~~~ 220 (252)
T d2q46a1 145 LGNGNILVWKRKAEQYL---ADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEA 220 (252)
T ss_dssp GGGCCHHHHHHHHHHHH---HHSSSCEEEEEECEEECSCTTSSCEEEESTTGGGGSSCCEEEHHHHHHHHHHHTTCGGG
T ss_pred ccccchhhhhhhhhhhh---hcccccceeecceEEECCCcchhhhhhccCcccccCCCCeEEHHHHHHHHHHHhCCccc
Confidence 222222 2222222222 23589999999999977643221100000000111223467789999999998887753
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=4.7e-10 Score=122.50 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=121.9
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh----hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI----DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~----~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.+|||||+|=||..++++|+++|+.|++++|-. +.+... +.+. ...+.++++|++|.+.+.++++.. +
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~-~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~-----~ 73 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI-ERLG--GKHPTFVEGDIRNEALMTEILHDH-----A 73 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHH-HHHH--TSCCEEEECCTTCHHHHHHHHHHT-----T
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHH-Hhhc--CCCCEEEEeecCCHHHHHHHHhcc-----C
Confidence 389999999999999999999999999987632 222222 2222 235778899999998887776542 5
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC------------C
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF------------A 861 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~------------~ 861 (958)
+|++||+|+..... .+.++-...+++|+.|+..++.++... +-.++|++||.+...+. .
T Consensus 74 ~d~ViHlAa~~~~~----~~~~~~~~~~~~Nv~gt~nlL~~~~~~-----~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~ 144 (338)
T d1udca_ 74 IDTVIHFAGLKAVG----ESVQKPLEYYDNNVNGTLRLISAMRAA-----NVKNFIFSSSATVYGDQPKIPYVESFPTGT 144 (338)
T ss_dssp CSEEEECCSCCCHH----HHHHCHHHHHHHHHHHHHHHHHHHHHH-----TCCEEEEEEEGGGGCSCCSSSBCTTSCCCC
T ss_pred CCEEEECCCccchh----hHHhCHHHHHHhHHHHHHHHHHHHHHh-----CCCEEEecCcceEEccccccccccccccCC
Confidence 89999999964321 122334588999999999988877543 23589999987754211 2
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCC
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTE 902 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~ 902 (958)
....|+.+|.+.+.+.+....+. .++.+..+.|+.+..+
T Consensus 145 p~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~ilR~~~v~G~ 183 (338)
T d1udca_ 145 PQSPYGKSKLMVEQILTDLQKAQ--PDWSIALLRYFNPVGA 183 (338)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHS--TTCEEEEEEECEEECC
T ss_pred CcchHHHHHhhhhHHHHHHHhhc--cCCeEEEEeeccEEec
Confidence 35679999999999998777664 4778888888877665
|
| >d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Hypothetical protein Atu2571 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.05 E-value=1.5e-10 Score=98.80 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCC----CCCCCCCchhhcCccHHHHHHHHHHHHHHhCCCCChHHHhcC--CcHHHHHHHHhcc
Q psy4557 206 QKNIAKIWCKILNL----YTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAH--PTVQEMAALLENK 274 (958)
Q Consensus 206 e~~l~~iw~~vL~~----~~i~~~~~FF~lGgdSL~a~~l~~~i~~~~~~~l~~~~l~~~--pTi~~la~~i~~~ 274 (958)
+.+|.++|+++++. +.++++++||++|+|||.+++|...|+++||+++|...++.+ ||++.|++++...
T Consensus 2 ~e~i~~il~~~~~l~~~~~~i~~~~~f~dlG~DSl~~~~l~~~le~~f~v~i~~~~l~~~~~~Ti~~la~~i~~~ 76 (83)
T d2jq4a1 2 NATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLI 76 (83)
T ss_dssp HHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHcCCCCCHHHHhCccHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhHHHHHHHHHHH
Confidence 56789999998764 469999999999999999999999999999999999999964 9999999999754
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.04 E-value=1.6e-09 Score=118.75 Aligned_cols=175 Identities=20% Similarity=0.223 Sum_probs=130.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
++||.+|||||+|=||..+++.|.++|+.|++++|+..+...+.+.... ...+..+.+|++|.+.+.++++.. .
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~-~~~i~~~~~Dl~d~~~l~~~~~~~-----~ 79 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV-ADGMQSEIGDIRDQNKLLESIREF-----Q 79 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT-TTTSEEEECCTTCHHHHHHHHHHH-----C
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhc-ccCCeEEEeeccChHhhhhhhhhc-----h
Confidence 6899999999999999999999999999999999987655544443322 235778899999998887766543 5
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC------------CC
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP------------FA 861 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~------------~~ 861 (958)
+|++++.|+..... .+.+..+..+++|+.|+..++.++.. .+....+++.||...... ..
T Consensus 80 ~~~v~~~aa~~~~~----~~~~~~~~~~~~Nv~g~~n~l~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 151 (356)
T d1rkxa_ 80 PEIVFHMAAQPLVR----LSYSEPVETYSTNVMGTVYLLEAIRH----VGGVKAVVNITSDKCYDNKEWIWGYRENEAMG 151 (356)
T ss_dssp CSEEEECCSCCCHH----HHHHCHHHHHHHHTHHHHHHHHHHHH----HCCCCEEEEECCGGGBCCCCSSSCBCTTSCBC
T ss_pred hhhhhhhhcccccc----ccccCCccccccccccchhhhhhhhc----cccccccccccccccccccccccccccccccC
Confidence 89999999875322 12344577899999999988887654 223456666666554321 12
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhCC------CCcEEEEEECCcccCC
Q psy4557 862 GLAVYTGTKYFIEGISGALRQEVSD------RNIKVTCIQAGDVKTE 902 (958)
Q Consensus 862 ~~~~Y~asKaa~~~l~~~la~el~~------~gIrv~~v~PG~v~T~ 902 (958)
....|+.+|.+.+.+.+..+.++.. .++.+..+.|+.+.-+
T Consensus 152 p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp 198 (356)
T d1rkxa_ 152 GYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGG 198 (356)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECT
T ss_pred CCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCC
Confidence 3456999999999999988887653 3788888888877644
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=4.1e-10 Score=116.15 Aligned_cols=198 Identities=16% Similarity=0.189 Sum_probs=132.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+++|.++||||||-||..++++|.++|. +|++++|+..+... .....+....+|+.+.+++ .+.
T Consensus 11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~------~~~~~i~~~~~D~~~~~~~-------~~~ 77 (232)
T d2bkaa1 11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE------EAYKNVNQEVVDFEKLDDY-------ASA 77 (232)
T ss_dssp HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS------GGGGGCEEEECCGGGGGGG-------GGG
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc------cccceeeeeeecccccccc-------ccc
Confidence 46889999999999999999999999995 79999998643221 1113455666787765543 344
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
+...|++|+|+|... ..........+|+.++..+++.+.. .+-.++|++||...... ....|+.+|
T Consensus 78 ~~~~d~vi~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~-----~~v~~fi~~Ss~~~~~~--~~~~Y~~~K 143 (232)
T d2bkaa1 78 FQGHDVGFCCLGTTR-------GKAGAEGFVRVDRDYVLKSAELAKA-----GGCKHFNLLSSKGADKS--SNFLYLQVK 143 (232)
T ss_dssp GSSCSEEEECCCCCH-------HHHHHHHHHHHHTHHHHHHHHHHHH-----TTCCEEEEECCTTCCTT--CSSHHHHHH
T ss_pred ccccccccccccccc-------cccchhhhhhhcccccceeeecccc-----cCccccccCCccccccC--ccchhHHHH
Confidence 456899999998742 1234456678899999888877632 23468999999876533 345699999
Q ss_pred HHHHHHHHHHHHHhCCCCc-EEEEEECCcccCCCCCCCCChhhhhhh-cc----ccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 871 YFIEGISGALRQEVSDRNI-KVTCIQAGDVKTELLSHSTDRDVVDKY-DI----SKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gI-rv~~v~PG~v~T~~~~~~~~~~~~~~~-~~----~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
...+...+ ..|. ++..+.||.+..+.............+ .. ......+..+|+|++++..+..+...
T Consensus 144 ~~~E~~l~-------~~~~~~~~IlRP~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~dvA~a~i~~~~~~~~~ 216 (232)
T d2bkaa1 144 GEVEAKVE-------ELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDK 216 (232)
T ss_dssp HHHHHHHH-------TTCCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCCCS
T ss_pred HHhhhccc-------cccccceEEecCceeecCCCcCcHHHHHHHHHhhccCCcccCCCeEEHHHHHHHHHHHHhcCccC
Confidence 88775443 2343 577889999977643211110011111 00 01122467799999999988777653
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.00 E-value=9.3e-09 Score=106.93 Aligned_cols=220 Identities=18% Similarity=0.180 Sum_probs=137.2
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.+++++|||||++-||..+.+.|++++ ++|+...|..+ ...+-..+.... +..++..+.+|++.+
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~G-a~V~i~~r~~~--~~~~~~~~l~~~---------~g~~~~~~~~Dv~~~--- 67 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLE--EASEAAQKLTEK---------YGVETMAFRCDVSNY--- 67 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHH--HHHHHHHHHHHH---------HCCCEEEEECCTTCH---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHH--HHHHHHHHHHHH---------hCCcEEEEEccCCCH---
Confidence 357899999999999999999999875 67777777422 111212222222 235788899999853
Q ss_pred CCcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 397 LKNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 397 L~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
++.+.+. .++|++||||+..... .+ ++...++|+.|+..+.+.+. +.+..+++++||.
T Consensus 68 ----~~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~ 143 (251)
T d1vl8a_ 68 ----EEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL 143 (251)
T ss_dssp ----HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred ----HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence 4444332 4799999999964321 12 33457789999999887654 3344589999885
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
....... .....|+.||..-+.+.+.. ..+|+.+..+-||.|-.+.....+...+....+
T Consensus 144 ~~~~~~~----------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~ 207 (251)
T d1vl8a_ 144 TVEEVTM----------------PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYM 207 (251)
T ss_dssp GGTCCCS----------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHH
T ss_pred hhccccC----------------ccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHH
Confidence 4321000 11236999999999888653 356999999999988644322222222222221
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
. . ..|-. -+.-.+++|++++.|+.... -.|++.++..
T Consensus 208 ~----~--~~pl~----R~~~pedvA~~v~fL~S~~a~~itG~~i~vDG 246 (251)
T d1vl8a_ 208 L----K--RIPLG----RTGVPEDLKGVAVFLASEEAKYVTGQIIFVDG 246 (251)
T ss_dssp H----H--TCTTS----SCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred H----h--cCCCC----CCCCHHHHHHHHHHHhCchhCCCcCcEEEeCc
Confidence 1 1 22321 12345778999998875432 2567777653
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.00 E-value=7.1e-10 Score=122.26 Aligned_cols=212 Identities=13% Similarity=0.137 Sum_probs=142.4
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh---hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID---RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~---~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.+|||||+|=||..++++|+++|+.|++.-++.. ..+.+. .+. ...++.++.+|++|...+.++++.. ++
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~-~~~-~~~~~~~~~~Dl~d~~~l~~~~~~~-----~~ 74 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLS-DIS-ESNRYNFEHADICDSAEITRIFEQY-----QP 74 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGT-TTT-TCTTEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHH-hhh-hcCCcEEEEccCCCHHHHHHHHHhC-----CC
Confidence 4899999999999999999999998665433211 111111 111 1246888999999999888776543 68
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC----CCCcEEEEecCccCcCC-----------
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS----RRPGHILNISSNAGVRP----------- 859 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~----~~~g~IV~isS~~g~~~----------- 859 (958)
|++||+|+...... +.++-...+++|+.|+..+.+.+....... ....++|++||.+..-.
T Consensus 75 d~VihlAa~~~~~~----~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~ 150 (361)
T d1kewa_ 75 DAVMHLAAESHVDR----SITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSV 150 (361)
T ss_dssp SEEEECCSCCCHHH----HHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTS
T ss_pred CEEEECccccchhh----HHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCcccccc
Confidence 99999998753211 123335789999999999999887765421 12358999999774311
Q ss_pred ----------CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC-Chhhhhhh------ccccC-
Q psy4557 860 ----------FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST-DRDVVDKY------DISKA- 921 (958)
Q Consensus 860 ----------~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~-~~~~~~~~------~~~~~- 921 (958)
......|+.||.+.+.+.+..+..+ |+.+.++.|+.|.-|...... -+..+... .....
T Consensus 151 ~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~---~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g 227 (361)
T d1kewa_ 151 TLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY---GLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKG 227 (361)
T ss_dssp CCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTS
T ss_pred CCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEeCCC
Confidence 1123569999999999999988765 688899999888766432111 01111110 00010
Q ss_pred ---CCCCCHHHHHHHHHHHhcCCCC
Q psy4557 922 ---VPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 922 ---~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
..++..+|+|++++.++..+..
T Consensus 228 ~~~r~~i~v~D~a~ai~~~~~~~~~ 252 (361)
T d1kewa_ 228 DQIRDWLYVEDHARALHMVVTEGKA 252 (361)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCT
T ss_pred CeEEeCEEHHHHHHHHHHHHhcCCC
Confidence 1246789999999998866543
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Probab=99.00 E-value=4.7e-10 Score=96.25 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCC--CCCCCCchhhcCccHHHHHHHHHHHHHHhCCCCChHHHhcCCcHHHHHHHHhcc
Q psy4557 204 QSQKNIAKIWCKILNLY--TLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENK 274 (958)
Q Consensus 204 ~~e~~l~~iw~~vL~~~--~i~~~~~FF~lGgdSL~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~la~~i~~~ 274 (958)
+....|.++|+++|+.+ .++++.+|+++|+|||.++++...|+++||++++..+++++||+++++++|...
T Consensus 8 ~i~~~l~~iv~~~l~~~~~~i~~~~~~~dlG~DSl~~v~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~ 80 (85)
T d1vkua_ 8 KLIAKFVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKK 80 (85)
T ss_dssp HHHHHHHHHHHHTTCCCCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCCCHHHhcCcchHHHHHHHHHHHHccCCCCHHHHHHcCCHHHHHHHHHHH
Confidence 46778999999999886 699999999999999999999999999999999999999999999999999753
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=1.9e-09 Score=116.03 Aligned_cols=152 Identities=12% Similarity=0.070 Sum_probs=114.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
-|.+|||||+|=||..++++|+++|+.|+++.+.. .+|+.+.+.+.++++. ..+|
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~--------------------~~~~~~~~~~~~~~~~-----~~~d 56 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD--------------------ELNLLDSRAVHDFFAS-----ERID 56 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT--------------------TCCTTCHHHHHHHHHH-----HCCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch--------------------hccccCHHHHHHHHhh-----cCCC
Confidence 46799999999999999999999999988765432 1589998888776642 2589
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC---------------
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF--------------- 860 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~--------------- 860 (958)
.++++|+....... ........+++|+.|+..++.++.. . +-.++|++||.+..-+.
T Consensus 57 ~v~~~a~~~~~~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~----~-~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~ 128 (315)
T d1e6ua_ 57 QVYLAAAKVGGIVA---NNTYPADFIYQNMMIESNIIHAAHQ----N-DVNKLLFLGSSCIYPKLAKQPMAESELLQGTL 128 (315)
T ss_dssp EEEECCCCCCCHHH---HHHCHHHHHHHHHHHHHHHHHHHHH----T-TCCEEEEECCGGGSCTTCCSSBCGGGTTSSCC
T ss_pred EEEEcchhcccccc---chhhHHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEECCceEcCCCCCCCccCCccccCCC
Confidence 99999977543221 2233455688999999998877643 2 23589999998854211
Q ss_pred -CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCC
Q psy4557 861 -AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTEL 903 (958)
Q Consensus 861 -~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~ 903 (958)
+....|+.||.+.+.+.+.++.+. |+++..+.|+.|.-|.
T Consensus 129 ~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ilR~~~vyGp~ 169 (315)
T d1e6ua_ 129 EPTNEPYAIAKIAGIKLCESYNRQY---GRDYRSVMPTNLYGPH 169 (315)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEESTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEeeccEECCC
Confidence 123469999999999999988775 7999999998887653
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=98.99 E-value=9.5e-10 Score=114.86 Aligned_cols=221 Identities=13% Similarity=0.108 Sum_probs=139.9
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++++||||||++-||..+.++|+++ +++|+.+.|..........+.. . ....++.++..|++.+.-.
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~-G~~vii~~r~~~~~~~~~~~~~---~--------~~~~~~~~~~~d~~~~~~~ 70 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKR-NLKNFVILDRVENPTALAELKA---I--------NPKVNITFHTYDVTVPVAE 70 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-CCSEEEEEESSCCHHHHHHHHH---H--------CTTSEEEEEECCTTSCHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCcccHHHHHHHHh---h--------CCCCCEEEEEeecCCCHHH
Confidence 35789999999999999999999877 4666666676554433333321 1 1135788889998753211
Q ss_pred CCcHHHHHHH---hcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhcc----C---CCccEEEEecccccCCCCC
Q psy4557 397 LKNQDEYVSL---SYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFL----N---KIKSFHYVSTDSIYPSTSE 466 (958)
Q Consensus 397 L~~~~~~~~l---~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~----~---~~k~~~~vST~~v~~~~~~ 466 (958)
+. +.++.+ ...+|++||||+..+ ...++...++|+.|+.++.+.+.. . ...+++++||...+.+.
T Consensus 71 ~~--~~~~~~~~~~g~iDilvnnAG~~~-~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~-- 145 (254)
T d1sbya1 71 SK--KLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI-- 145 (254)
T ss_dssp HH--HHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC--
T ss_pred HH--HHHHHHHHHcCCCCEEEeCCCCCC-HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCC--
Confidence 10 112222 257999999999754 456788899999999998876532 1 12468899886653211
Q ss_pred CCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcCh-hHHHHHHHHHHHHh
Q psy4557 467 NFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNL-VDLNLYILKAITRL 541 (958)
Q Consensus 467 ~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~-~d~~~~l~~~~~~~ 541 (958)
.....|+.||..-..+.+.. ...|+.+..+-||.|..+... .++. .+....+.+ ..
T Consensus 146 ---------------~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~-~~~~~~~~~~~~~~--~~- 206 (254)
T d1sbya1 146 ---------------HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVH-TFNSWLDVEPRVAE--LL- 206 (254)
T ss_dssp ---------------TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHH-SCCCGGGSCTTHHH--HH-
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCcccc-ccccchhHHHHHHh--cc-
Confidence 11237999999999887653 345999999999999654210 0110 010001100 00
Q ss_pred CCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecC
Q psy4557 542 GYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFIN 581 (958)
Q Consensus 542 g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n 581 (958)
......+.+.+|++++.+..... .|.++++..
T Consensus 207 -------~~~~~~~~e~va~~~~~~~~~~~-tG~vi~vdg 238 (254)
T d1sbya1 207 -------LSHPTQTSEQCGQNFVKAIEANK-NGAIWKLDL 238 (254)
T ss_dssp -------TTSCCEEHHHHHHHHHHHHHHCC-TTCEEEEET
T ss_pred -------ccCCCCCHHHHHHHHHHhhhCCC-CCCEEEECC
Confidence 11234588999999988765433 577777654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.99 E-value=2.2e-09 Score=117.14 Aligned_cols=210 Identities=16% Similarity=0.140 Sum_probs=141.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh----hhHHHHHHHhh-cCCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI----DRLENLKTSLQ-NAPGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~----~~l~~~~~~l~-~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
.+-|++|||||+|-||..++++|.++|++|+.++|.. ..+........ .....+.++.+|..|.......
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~----- 88 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNA----- 88 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHH-----
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccc-----
Confidence 3568999999999999999999999999999998632 22333322211 1124578899999987754322
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC---------
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--------- 859 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~--------- 859 (958)
....+.+++.++..... .+.++....+++|+.|+..++.++.. . +..++|++||.+..-.
T Consensus 89 --~~~~~~v~~~~a~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~----~-~~~~~i~~SS~~vyg~~~~~~~~E~ 157 (341)
T d1sb8a_ 89 --CAGVDYVLHQAALGSVP----RSINDPITSNATNIDGFLNMLIAARD----A-KVQSFTYAASSSTYGDHPGLPKVED 157 (341)
T ss_dssp --HTTCSEEEECCSCCCHH----HHHHCHHHHHHHHTHHHHHHHHHHHH----T-TCSEEEEEEEGGGGTTCCCSSBCTT
T ss_pred --ccccccccccccccccc----ccccCccchhheeehhHHHHHHHHHh----c-CCceEEEcccceeeCCCCCCCccCC
Confidence 24568888887764321 13456678999999999998887743 2 2359999999874321
Q ss_pred --CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh-hhh----hhh------ccc----cCC
Q psy4557 860 --FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR-DVV----DKY------DIS----KAV 922 (958)
Q Consensus 860 --~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~-~~~----~~~------~~~----~~~ 922 (958)
......|+.||.+.+.+.+.++... |+++..+.|+.+..+........ ... ... ... ...
T Consensus 158 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r 234 (341)
T d1sb8a_ 158 TIGKPLSPYAVTKYVNELYADVFSRCY---GFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSR 234 (341)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEE
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHh---CCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEE
Confidence 1234689999999999999988765 68888899988776543221110 010 110 000 112
Q ss_pred CCCCHHHHHHHHHHHhcCCC
Q psy4557 923 PVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 923 ~~~~p~~ia~~i~~~l~~~~ 942 (958)
.++-.+|++.++..++..+.
T Consensus 235 ~~i~v~D~~~a~~~~~~~~~ 254 (341)
T d1sb8a_ 235 DFCYIENTVQANLLAATAGL 254 (341)
T ss_dssp CCEEHHHHHHHHHHHHTCCG
T ss_pred EEEEEeccchhhhhhhhccc
Confidence 35677999999988776553
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=98.98 E-value=5.8e-09 Score=112.90 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=108.0
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecC--hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR--IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~--~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
.+|||||+|=||..++++|+++|++|+++++- ....+.+. .+.. ..++.++.+|+++.+++.++++.. ++|
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~-~~~~-~~~~~~i~~Di~~~~~l~~~~~~~-----~~d 74 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLH-WLSS-LGNFEFVHGDIRNKNDVTRLITKY-----MPD 74 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHH-HHHT-TCCCEEEECCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHH-Hhhc-cCCcEEEEcccCCHHHHHHHHHhc-----CCc
Confidence 48999999999999999999999999998642 22222222 2222 346788999999999988777644 589
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC----------------
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP---------------- 859 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~---------------- 859 (958)
++||+|+...... ..++-...+++|+.|+..+++++... ...-.|++.|+.+....
T Consensus 75 ~Vih~aa~~~~~~----~~~~~~~~~~~Nv~gt~nll~~~~~~----~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~ 146 (338)
T d1orra_ 75 SCFHLAGQVAMTT----SIDNPCMDFEINVGGTLNLLEAVRQY----NSNCNIIYSSTNKVYGDLEQYKYNETETRYTCV 146 (338)
T ss_dssp EEEECCCCCCHHH----HHHCHHHHHHHHHHHHHHHHHHHHHH----CTTCEEEEEEEGGGGTTCTTSCEEECSSCEEET
T ss_pred eEEeecccccccc----cccChHHHHHHHHHHHHHHHHhhhcc----ccccccccccccccccccccccccccccccccc
Confidence 9999998864321 22345688999999999998876542 22335555554332111
Q ss_pred -----------CCCChhhhHHHHHHHHHHHHHHHHhC
Q psy4557 860 -----------FAGLAVYTGTKYFIEGISGALRQEVS 885 (958)
Q Consensus 860 -----------~~~~~~Y~asKaa~~~l~~~la~el~ 885 (958)
......|+.+|...+.+.......+.
T Consensus 147 ~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~ 183 (338)
T d1orra_ 147 DKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFG 183 (338)
T ss_dssp TCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCcccCCccccccccccccchhhhhhhhhhhccC
Confidence 11356799999999999888887763
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.96 E-value=1.3e-08 Score=105.31 Aligned_cols=208 Identities=12% Similarity=0.078 Sum_probs=137.0
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++-||..+.++|++++ ++|+...|.. +++++.... ..+++.++.+|++.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G-~~V~~~~r~~------~~~~~~~~~---------~~~~~~~~~~Dv~~~--- 64 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILD------EEGKAMAAE---------LADAARYVHLDVTQP--- 64 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH------HHHHHHHHH---------TGGGEEEEECCTTCH---
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH------HHHHHHHHH---------hhCcceEEEeecCCH---
Confidence 467899999999999999999999774 6787777742 233333222 235778889998753
Q ss_pred CCcHHHHHHH-------hcccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 397 LKNQDEYVSL-------SYEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 397 L~~~~~~~~l-------~~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
++.+.+ ...+|++||||+..... ..++...++|+.|+..+.+.+. +.+..+++++||.
T Consensus 65 ----~~v~~~~~~~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~ 140 (244)
T d1nffa_ 65 ----AQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSI 140 (244)
T ss_dssp ----HHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred ----HHHHHHHHHHHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccc
Confidence 333333 24689999999975431 1234567899999999987653 2333579999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
..+... .....|+.||+.-+.+.+.. ..+|+.+..+-||.|-.+..... ..+
T Consensus 141 ~~~~~~-----------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~--~~~----- 196 (244)
T d1nffa_ 141 EGLAGT-----------------VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV--PED----- 196 (244)
T ss_dssp GGTSCC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS--CTT-----
T ss_pred cccccc-----------------ccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhh--hHH-----
Confidence 653211 11237999999999988763 35699999999998854321100 000
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc--CCCCceEEecC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV--NNANKIYNFIN 581 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~--~~~~~v~h~~n 581 (958)
....|- --+.-.+++|++++.|+... .-.|+++++..
T Consensus 197 ------~~~~pl----~R~~~p~diA~~v~fL~s~~s~~itG~~i~vDG 235 (244)
T d1nffa_ 197 ------IFQTAL----GRAAEPVEVSNLVVYLASDESSYSTGAEFVVDG 235 (244)
T ss_dssp ------CSCCSS----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ------HHhccc----cCCCCHHHHHHHHHHHhChhhCCCcCCEEEECC
Confidence 011121 12455688999999887543 23577777754
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=6.2e-10 Score=116.38 Aligned_cols=225 Identities=11% Similarity=0.061 Sum_probs=141.6
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++|.+|||||++-||..+.+.|++++ ++|+...|... ..+...+.+.. .....++.++.+|++.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~---~~~~~~~~l~~-------~~~~~~~~~~~~Dv~~----- 65 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLE---AGVQCKAALHE-------QFEPQKTLFIQCDVAD----- 65 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHHTT-------TSCGGGEEEEECCTTS-----
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHH---HHHHHHHHHHH-------hcCCCcEEEEEeecCC-----
Confidence 46789999999999999999998764 68877777422 12222222111 0113578889999885
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhcc----CC---CccEEEEecccccCC
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSFL----NK---IKSFHYVSTDSIYPS 463 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~~----~~---~k~~~~vST~~v~~~ 463 (958)
.++.+.+. ..+|++||||+.. ...+++...++|+.|+.++.+++.. .+ ..+++++||.+.+-+
T Consensus 66 --~~~v~~~~~~~~~~~G~iDilVnnAg~~-~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~ 142 (254)
T d2gdza1 66 --QQQLRDTFRKVVDHFGRLDILVNNAGVN-NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP 142 (254)
T ss_dssp --HHHHHHHHHHHHHHHSCCCEEEECCCCC-CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC
T ss_pred --HHHHHHHHHHHHHHcCCcCeeccccccc-ccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccC
Confidence 34444432 4789999999974 4567888889999998888776642 11 135999998764321
Q ss_pred CCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHH---H---hhCCCCEEEEecCceeccCCCCCcCh------hHHH
Q psy4557 464 TSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN---A---GQMGLPVSIVRCGNIGGSLEFKNWNL------VDLN 531 (958)
Q Consensus 464 ~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~---a---~~~glp~~I~R~g~i~G~~~~g~~n~------~d~~ 531 (958)
. .....|+.||..-+.+.+. + ..+|+.+..+-||.|--+.....+.. .++.
T Consensus 143 ~-----------------~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~ 205 (254)
T d2gdza1 143 V-----------------AQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYK 205 (254)
T ss_dssp C-----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGH
T ss_pred C-----------------CCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHH
Confidence 0 1123699999999988753 2 34689999999998843221111110 0111
Q ss_pred HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecCCCCCCHH
Q psy4557 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFINTNPIHIK 588 (958)
Q Consensus 532 ~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n~~~~~~~ 588 (958)
..+ ...+.++- +..-+++|++++.|+.+..-.|.+.++.....+.|.
T Consensus 206 ~~~-~~~~p~~r---------~~~pedvA~~v~fL~s~~~itG~~i~VdGG~~~~~~ 252 (254)
T d2gdza1 206 DHI-KDMIKYYG---------ILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQ 252 (254)
T ss_dssp HHH-HHHHHHHC---------CBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEEC
T ss_pred HHH-HhcCCCCC---------CcCHHHHHHHHHHHHcCCCCCCCEEEECCCCeeecc
Confidence 111 11222221 223467999999988765556777777665555443
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=98.96 E-value=1.1e-08 Score=106.98 Aligned_cols=220 Identities=15% Similarity=0.127 Sum_probs=139.1
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|.+|||||++-||..++++|++++ ++|+...|... ...+.+.+.+..+ ..++..+.+|++.+
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G-~~Vv~~~r~~~--~~~~~~~~~~~~~---------g~~~~~~~~Dvt~~--- 69 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKE--DEANSVLEEIKKV---------GGEAIAVKGDVTVE--- 69 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCH--HHHHHHHHHHHHT---------TCEEEEEECCTTSH---
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcH--HHHHHHHHHHHhc---------CCcEEEEEccCCCH---
Confidence 467899999999999999999999764 68877777532 2223333333222 35788899998853
Q ss_pred CCcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCC-ccEEEEec
Q psy4557 397 LKNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKI-KSFHYVST 457 (958)
Q Consensus 397 L~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~-k~~~~vST 457 (958)
++.+.+. ..+|++||||+..... .+ ++...++|+.|+..+.+.+. +.+. ..++++||
T Consensus 70 ----~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS 145 (261)
T d1geea_ 70 ----SDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS 145 (261)
T ss_dssp ----HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred ----HHHHHHHHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhcccccccccccccc
Confidence 4444432 4789999999975432 12 34567789999988877653 2332 35888998
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
.+..... .....|+.||..-+.+.+.. ..+|+.+..+-||.|--+.....+...+.
T Consensus 146 ~~~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~--- 205 (261)
T d1geea_ 146 VHEKIPW-----------------PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQ--- 205 (261)
T ss_dssp GGGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHH---
T ss_pred chhcccC-----------------ccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHH---
Confidence 7543210 11247999999999888753 35699999999998854321000001111
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.+.. ....|-. -+.-.+++|++++.|+.... -.|+++.+...
T Consensus 206 -~~~~--~~~~pl~----R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG 249 (261)
T d1geea_ 206 -RADV--ESMIPMG----YIGEPEEIAAVAAWLASSEASYVTGITLFADGG 249 (261)
T ss_dssp -HHHH--HTTCTTS----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -HHHH--HhcCCCC----CCCCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 1111 1223321 13456889999999885432 35777777653
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=98.96 E-value=1.3e-08 Score=106.13 Aligned_cols=217 Identities=14% Similarity=0.084 Sum_probs=137.1
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++|++|||||++-||..+.+.|++++ ++|++..|.. +++++....+ ..++..+.+|++.+
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~------~~l~~~~~~~---------~~~~~~~~~Dvt~~---- 63 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREG-ARVAIADINL------EAARATAAEI---------GPAACAIALDVTDQ---- 63 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTT-EEEEEEESCH------HHHHHHHHHH---------CTTEEEEECCTTCH----
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH------HHHHHHHHHh---------CCceEEEEeeCCCH----
Confidence 56899999999999999999998774 6787777642 2333333322 35788899998853
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc-----cCCCccEEEEecc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF-----LNKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~-----~~~~k~~~~vST~ 458 (958)
++.+.+. ..+|++||+|+..... .+ ++...++|+.|+..+.+.+. ..+..+++++||.
T Consensus 64 ---~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~ 140 (256)
T d1k2wa_ 64 ---ASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQ 140 (256)
T ss_dssp ---HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred ---HHHHHHHHHHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccch
Confidence 4444442 4789999999975432 12 33567789999988886432 2233579999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCc---------
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNW--------- 525 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~--------- 525 (958)
+..-.. .....|+.||..-+.+.+.. ..+|+.+..+-||.+-.+...+..
T Consensus 141 ~~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~ 203 (256)
T d1k2wa_ 141 AGRRGE-----------------ALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENL 203 (256)
T ss_dssp GGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTC
T ss_pred hhcccc-----------------ccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccC
Confidence 643211 12347999999999888653 356999999999977644310000
Q ss_pred ChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCC
Q psy4557 526 NLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNP 584 (958)
Q Consensus 526 n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~ 584 (958)
...+.. ..+. ...|-. -+.-.+.+|++++.|+.... -.|++.++.....
T Consensus 204 ~~~~~~-~~~~-----~~~Plg----R~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG~~ 254 (256)
T d1k2wa_ 204 PRGEKK-RQVG-----AAVPFG----RMGRAEDLTGMAIFLATPEADYIVAQTYNVDGGNW 254 (256)
T ss_dssp CTTHHH-HHHH-----HHSTTS----SCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTTSS
T ss_pred ChHHHH-HHHH-----hcCCCC----CCcCHHHHHHHHHHHhCchhCCccCceEEECcchh
Confidence 000000 0000 011211 13345779999998875432 3577777765443
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=98.95 E-value=4.2e-08 Score=103.01 Aligned_cols=223 Identities=11% Similarity=0.108 Sum_probs=142.2
Q ss_pred ccccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 316 KLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 316 ~~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
+.++|.+|||||++-||..+++.|++++ ++|+...|.. +++++...... ...++.++.+|++.+
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~------~~~~~~~~~l~-------~~~~~~~~~~Dv~~~-- 66 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIAD------DHGQKVCNNIG-------SPDVISFVHCDVTKD-- 66 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH------HHHHHHHHHHC-------CTTTEEEEECCTTCH--
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCH------HHHHHHHHHhc-------CCCceEEEEccCCCH--
Confidence 4578899999999999999999998775 6777666642 22333222221 134678888998753
Q ss_pred CCCcHHHHHHHh-------cccCEEEEcccccCcc------cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEE
Q psy4557 396 GLKNQDEYVSLS-------YEIDMIIHAAAFVNLI------LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYV 455 (958)
Q Consensus 396 GL~~~~~~~~l~-------~~vd~IiH~AA~v~~~------~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~v 455 (958)
++.+.+. ..+|++||||+..... .+ ++...++|+.|+..+.+.+. +.+..+++++
T Consensus 67 -----~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~i 141 (268)
T d2bgka1 67 -----EDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFT 141 (268)
T ss_dssp -----HHHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred -----HHHHHHHHHHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccc
Confidence 4444442 4789999999964321 12 34567789999988887653 3344578888
Q ss_pred ecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHH
Q psy4557 456 STDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLN 531 (958)
Q Consensus 456 ST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~ 531 (958)
||.+.+-... .....|+.||..-+.+.+.. ..+|+.+..+-||.|-.+.....+......
T Consensus 142 ss~~~~~~~~----------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~ 205 (268)
T d2bgka1 142 ASISSFTAGE----------------GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSR 205 (268)
T ss_dssp CCGGGTCCCT----------------TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHH
T ss_pred cccccccccc----------------ccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHH
Confidence 8865432110 11236999999999988753 356999999999999776544443322111
Q ss_pred HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 532 ~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.. + .......|. --+...+.+|++++.|+.... -.|++.++...
T Consensus 206 ~~--~-~~~~~~~~~----gr~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG 251 (268)
T d2bgka1 206 VE--E-LAHQAANLK----GTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGG 251 (268)
T ss_dssp HH--H-HHHHTCSSC----SCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HH--H-HHHhccccC----CCCcCHHHHHHHHHHHhChhhCCccCceEEECcC
Confidence 11 1 111111121 124557889999999885432 35778887653
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=4.8e-09 Score=112.97 Aligned_cols=199 Identities=15% Similarity=0.129 Sum_probs=130.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh-hHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID-RLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~-~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
|.++||||+|=||..++++|+++|++|++++|... +.+.+.. .. ...++.....|+.+. .+.++|
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~-~~-~~~~~d~~~~~~~~~------------~~~~~d 67 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEH-WI-GHENFELINHDVVEP------------LYIEVD 67 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGG-GT-TCTTEEEEECCTTSC------------CCCCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHH-hc-CCCceEEEehHHHHH------------HHcCCC
Confidence 78999999999999999999999999999986322 2222111 11 122344444454321 234699
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC----------------C
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR----------------P 859 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~----------------~ 859 (958)
++||+|+....... . ++..+.+++|+.|+..+++++.. . + .++|++||.+..- +
T Consensus 68 ~VihlAa~~~~~~~-~---~~~~~~~~~Nv~g~~~ll~~~~~----~-~-~k~I~~SS~~vy~~~~~~~~~e~~~~~~~~ 137 (312)
T d2b69a1 68 QIYHLASPASPPNY-M---YNPIKTLKTNTIGTLNMLGLAKR----V-G-ARLLLASTSEVYGDPEVHPQSEDYWGHVNP 137 (312)
T ss_dssp EEEECCSCCSHHHH-T---TCHHHHHHHHHHHHHHHHHHHHH----H-T-CEEEEEEEGGGGBSCSSSSBCTTCCCBCCS
T ss_pred EEEECcccCCchhH-H---hCHHHHHHHHHHHHHHHHHHHHH----c-C-CcEEEEEChheecCCCCCCCCccccCCCCC
Confidence 99999997543211 1 22356789999999998887632 1 2 3899999865331 1
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCCh---hhhhhh------cccc----CCCCCC
Q psy4557 860 FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDR---DVVDKY------DISK----AVPVLT 926 (958)
Q Consensus 860 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~---~~~~~~------~~~~----~~~~~~ 926 (958)
......|+.||.+.+.+.+..+..+ |+++.++.|+.|.-|........ ..+... .... ...++.
T Consensus 138 ~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~ 214 (312)
T d2b69a1 138 IGPRACYDEGKRVAETMCYAYMKQE---GVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQY 214 (312)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEE
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHh---CCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEE
Confidence 1235679999999999999988875 78999999998886643221110 111110 0100 113567
Q ss_pred HHHHHHHHHHHhcCCC
Q psy4557 927 TKEISQSIIFALLQPS 942 (958)
Q Consensus 927 p~~ia~~i~~~l~~~~ 942 (958)
.+|++++++.++..+.
T Consensus 215 v~D~~~~~~~~~~~~~ 230 (312)
T d2b69a1 215 VSDLVNGLVALMNSNV 230 (312)
T ss_dssp HHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 8999999998775543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=98.93 E-value=5.6e-09 Score=108.40 Aligned_cols=216 Identities=14% Similarity=0.068 Sum_probs=132.4
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++-||..+.++|++++ ++|+...|..+.. + +. +.. ...++..|++.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G-~~V~~~~~~~~~~---~-~~---~~~-----------~~~~~~~Dv~~---- 59 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEGK---E-VA---EAI-----------GGAFFQVDLED---- 59 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTHH---H-HH---HHH-----------TCEEEECCTTC----
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHH---H-HH---HHc-----------CCeEEEEeCCC----
Confidence 357899999999999999999998775 6887777754321 1 11 111 23456788874
Q ss_pred CCcHHHHHHH-------hcccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 397 LKNQDEYVSL-------SYEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 397 L~~~~~~~~l-------~~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
.++.+.+ ...+|++||||+..... .+ ++...++|+.|+.++.+.+. +.+..+++++||.
T Consensus 60 ---~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~ 136 (248)
T d2d1ya1 60 ---ERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASV 136 (248)
T ss_dssp ---HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCG
T ss_pred ---HHHHHHHHHHHHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccc
Confidence 3444443 24799999999975431 12 34567899999999887764 3344589999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
..+-.. .....|+.||+.-+.+.+.. ..+|+.+..+-||.|-.+.....+.........
T Consensus 137 ~~~~~~-----------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~ 199 (248)
T d2d1ya1 137 QGLFAE-----------------QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERT 199 (248)
T ss_dssp GGTSBC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------
T ss_pred cccccc-----------------cccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHH
Confidence 653211 11247999999999888653 346999999999987532100000000000000
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
.+... ...|- --+.-.+++|++++.|+.... -.|+++++..
T Consensus 200 ~~~~~--~~~pl----~R~~~pedia~~v~fL~S~~s~~itG~~i~vDG 242 (248)
T d2d1ya1 200 RRDWE--DLHAL----RRLGKPEEVAEAVLFLASEKASFITGAILPVDG 242 (248)
T ss_dssp CHHHH--TTSTT----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHHHH--hcCCC----CCCcCHHHHHHHHHHHhCchhcCCCCcEEEcCc
Confidence 11111 11221 113345788999998875332 3577777754
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=5.2e-09 Score=114.01 Aligned_cols=201 Identities=9% Similarity=0.069 Sum_probs=135.2
Q ss_pred EEEEEcCCchHHHHHHHHHHHcC-CeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
.+|||||+|=||..++++|+++| +.|+++++.......+. ...++.++.+|+++.+++.+.+ .+ .+|+
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~-----~~~~~~~i~~Di~~~~~~~~~~---~~---~~d~ 70 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-----NHPHFHFVEGDISIHSEWIEYH---VK---KCDV 70 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-----TCTTEEEEECCTTTCSHHHHHH---HH---HCSE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc-----cCCCeEEEECccCChHHHHHHH---Hh---CCCc
Confidence 48999999999999999999999 58998887655433222 1346889999999876654422 22 4899
Q ss_pred EEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC----------------
Q psy4557 797 LVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF---------------- 860 (958)
Q Consensus 797 lInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~---------------- 860 (958)
+||+|+...... ..+.-...+++|+.|+..++..+.. . +-+.+++||.......
T Consensus 71 Vih~a~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~~~~----~--~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~ 140 (342)
T d2blla1 71 VLPLVAIATPIE----YTRNPLRVFELDFEENLRIIRYCVK----Y--RKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGP 140 (342)
T ss_dssp EEECBCCCCHHH----HHHSHHHHHHHHTHHHHHHHHHHHH----T--TCEEEEECCGGGGBTCCCSSBCTTTCCCBCCC
T ss_pred cccccccccccc----cccCCcccccccccccccccccccc----c--cccccccccccccccccccccccccccccccc
Confidence 999999864321 1223357899999999998887633 2 2366677765532211
Q ss_pred --CCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCC----C-hhhh----hhh------ccc----
Q psy4557 861 --AGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHST----D-RDVV----DKY------DIS---- 919 (958)
Q Consensus 861 --~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~----~-~~~~----~~~------~~~---- 919 (958)
.....|+.||.+.+.+.+..+..+ |+.+..+.|+.+..+...... . .... ... ...
T Consensus 141 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 217 (342)
T d2blla1 141 VNKPRWIYSVSKQLLDRVIWAYGEKE---GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGK 217 (342)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSC
T ss_pred cCCCcchhhhcccchhhhhhhhhccc---CceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCC
Confidence 123569999999999999888775 788888888877765322211 0 0000 000 000
Q ss_pred cCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 920 KAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 920 ~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
....++..+|+++++..++..+.
T Consensus 218 ~~r~~i~v~D~~~a~~~~~~~~~ 240 (342)
T d2blla1 218 QKRCFTDIRDGIEALYRIIENAG 240 (342)
T ss_dssp CEEECEEHHHHHHHHHHHHHCGG
T ss_pred eeeeecccccccceeeeehhhcc
Confidence 11236788999999999887653
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=98.93 E-value=8.5e-09 Score=107.92 Aligned_cols=223 Identities=13% Similarity=0.115 Sum_probs=135.3
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++|.+|||||++=||..+.++|++++ ++|+...|... ...+.+.+.+.. ....++.++.+|++.
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~G-a~V~~~~r~~~--~~~~~~~~~~~~--------~~g~~~~~~~~Dv~~----- 66 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGFGDA--AEIEKVRAGLAA--------QHGVKVLYDGADLSK----- 66 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECCSCH--HHHHHHHHHHHH--------HHTSCEEEECCCTTS-----
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCcH--HHHHHHHHHHHH--------hcCCcEEEEECCCCC-----
Confidence 56789999999999999999999775 67877777532 222333332221 123578899999985
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
.++.+.+. ..+|++||||+..... ..++...++|+.|+..+.+.+. +.+..+++++||.+
T Consensus 67 --~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~ 144 (260)
T d1x1ta1 67 --GEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAH 144 (260)
T ss_dssp --HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred --HHHHHHHHHHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccc
Confidence 34444443 4689999999975431 1234567789999988877653 23345899999876
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcCh-h-----H
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNL-V-----D 529 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~-~-----d 529 (958)
..... .....|+.||+.-+.+.+.. ..+|+.+..+.||.|--+.....+.. . +
T Consensus 145 ~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~ 207 (260)
T d1x1ta1 145 GLVAS-----------------ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVD 207 (260)
T ss_dssp GTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-----------------
T ss_pred ceecc-----------------CCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCC
Confidence 53211 11246999999999888753 34699999999998854331111100 0 0
Q ss_pred HHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 530 LNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 530 ~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
......+... ...|- --+.-.+++|++++.|+.... -.|++.++..
T Consensus 208 ~~~~~~~~~~--~~~Pl----~R~g~pediA~~v~fL~S~~a~~itG~~i~vDG 255 (260)
T d1x1ta1 208 QETAARELLS--EKQPS----LQFVTPEQLGGTAVFLASDAAAQITGTTVSVDG 255 (260)
T ss_dssp -------CHH--HHCTT----CCCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred hHHHHHHHHH--hcCCC----CCCcCHHHHHHHHHHHhChhhCCCcCCEEEECc
Confidence 0000000000 01121 123456788999998875432 3567777654
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Probab=98.92 E-value=4.9e-10 Score=94.97 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCC-----CCCCCCchhhcCccHHHHHHHHHHHHHHhCCCCChHHHhcCCcHHHHHHHHhcc
Q psy4557 206 QKNIAKIWCKILNLY-----TLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENK 274 (958)
Q Consensus 206 e~~l~~iw~~vL~~~-----~i~~~~~FF~lGgdSL~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~la~~i~~~ 274 (958)
-.+|.+++++.+|.. .++.+.+|+++|+|||.++++..+|+++||+.+|...+|++||+++|+++|...
T Consensus 5 ~e~l~~il~e~~g~~~~~~~~~d~d~~f~dlG~DSl~~~el~~~le~~~g~~l~~~~~~~~~Ti~~l~~~v~~~ 78 (82)
T d1or5a_ 5 VDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTT 78 (82)
T ss_dssp HHHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCcccccCCCcCcCHHHcCCChHhHHHHHHHHHHHHhCcCCHHHHHcCCCHHHHHHHHHhc
Confidence 345888999999864 245678899999999999999999999999999999999999999999999653
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.91 E-value=1.3e-08 Score=111.67 Aligned_cols=204 Identities=12% Similarity=0.037 Sum_probs=137.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
++..+|||||+|=||..++++|.++|+.|++++|....- .........+..+|+.+.+++.+++ ..+
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~ 80 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH------MTEDMFCDEFHLVDLRVMENCLKVT-------EGV 80 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSS------SCGGGTCSEEEECCTTSHHHHHHHH-------TTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccc------hhhhcccCcEEEeechhHHHHHHHh-------hcC
Confidence 567799999999999999999999999999997753311 0011123456778999887664433 368
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC---------------
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP--------------- 859 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~--------------- 859 (958)
|.+||.|+......... +.....+.+|+.|+..++.++... +-.++|++||......
T Consensus 81 d~Vih~a~~~~~~~~~~---~~~~~~~~~n~~gt~~ll~~~~~~-----~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e 152 (363)
T d2c5aa1 81 DHVFNLAADMGGMGFIQ---SNHSVIMYNNTMISFNMIEAARIN-----GIKRFFYASSACIYPEFKQLETTNVSLKESD 152 (363)
T ss_dssp SEEEECCCCCCCHHHHT---TCHHHHHHHHHHHHHHHHHHHHHT-----TCSEEEEEEEGGGSCGGGSSSSSSCEECGGG
T ss_pred CeEeecccccccccccc---cccccccccccchhhHHHHhHHhh-----Ccccccccccccccccccccccccccccccc
Confidence 99999998865432222 335678889999999888776432 2359999999775421
Q ss_pred ---CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhh-h----hh-hccc---------c
Q psy4557 860 ---FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDV-V----DK-YDIS---------K 920 (958)
Q Consensus 860 ---~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~-~----~~-~~~~---------~ 920 (958)
......|+.||.+.+.+++.++.++ |+.+..+.|+.+..+....... ... . .. .... .
T Consensus 153 ~~~~~p~~~Yg~sK~~~E~~~~~~~~~~---gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~ 229 (363)
T d2c5aa1 153 AWPAEPQDAFGLEKLATEELCKHYNKDF---GIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQ 229 (363)
T ss_dssp GSSBCCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCC
T ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCe
Confidence 1124579999999999999888775 7999999998887654221110 000 0 00 0000 0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCC
Q psy4557 921 AVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 921 ~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
...++..+|++.++..++..+.
T Consensus 230 ~rd~i~v~D~~~~~~~~~~~~~ 251 (363)
T d2c5aa1 230 TRSFTFIDECVEGVLRLTKSDF 251 (363)
T ss_dssp EECCEEHHHHHHHHHHHHHSSC
T ss_pred EEEEeehhHHHHHHHHHHhCCC
Confidence 1125678899999998776553
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=2.6e-08 Score=103.69 Aligned_cols=218 Identities=14% Similarity=0.155 Sum_probs=139.3
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++-||..+.+.|+++ +++|+...|.. +..+.+.+.+.. ...++..+.+|++++
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~---~~~~~~~~~l~~---------~g~~~~~~~~Dvs~~--- 72 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINA---DAANHVVDEIQQ---------LGGQAFACRCDITSE--- 72 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEESCH---HHHHHHHHHHHH---------TTCCEEEEECCTTCH---
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCH---HHHHHHHHHHHH---------cCCcEEEEEccCCCH---
Confidence 36789999999999999999998876 46777777742 222333333322 235788899999853
Q ss_pred CCcHHHHHHH-------hcccCEEEEcccccCc---ccC---hHHHHhhhHHHHHHHHHhhcc----CCCccEEEEeccc
Q psy4557 397 LKNQDEYVSL-------SYEIDMIIHAAAFVNL---ILP---YNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDS 459 (958)
Q Consensus 397 L~~~~~~~~l-------~~~vd~IiH~AA~v~~---~~~---~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~ 459 (958)
++.+.+ ...+|++||||+.... ..+ ++...++|+.|+..+.+.+.. .+..+++++||.+
T Consensus 73 ----~~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~ 148 (255)
T d1fmca_ 73 ----QELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMA 148 (255)
T ss_dssp ----HHHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred ----HHHHHHHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccc
Confidence 344333 2479999999996432 122 345677899999998876532 2335788888865
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
..... .....|+.||..-+.+.+.. ..+|+.+..+-||.|-.+.....++. +....+
T Consensus 149 ~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~-e~~~~~- 209 (255)
T d1fmca_ 149 AENKN-----------------INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITP-EIEQKM- 209 (255)
T ss_dssp GTCCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCH-HHHHHH-
T ss_pred hhccc-----------------cccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCH-HHHHHH-
Confidence 43211 11247999999999888753 34699999999998854432222222 222111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.+ ..|-. -+.-.+++|++++.|+.... -.|++.++...
T Consensus 210 ---~~--~~pl~----R~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG 249 (255)
T d1fmca_ 210 ---LQ--HTPIR----RLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249 (255)
T ss_dssp ---HH--TCSSC----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---Hh--cCCCC----CCcCHHHHHHHHHHHhCchhcCCcCCEEEECcC
Confidence 11 23321 12345889999999885432 35777777654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.7e-08 Score=102.92 Aligned_cols=214 Identities=17% Similarity=0.169 Sum_probs=136.7
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++-||..+.+.|++++ .+|+...|.. +++.+..... ..+..+..|++.
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G-~~V~~~~r~~------~~l~~~~~~~----------~~~~~~~~Dv~d---- 63 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQ------ADLDSLVREC----------PGIEPVCVDLGD---- 63 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH------HHHHHHHHHS----------TTCEEEECCTTC----
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCH------HHHHHHHHhc----------CCCeEEEEeCCC----
Confidence 467899999999999999999998765 6788777742 2333332221 346677889874
Q ss_pred CCcHHHHHHHh---cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc-----cCCCccEEEEeccccc
Q psy4557 397 LKNQDEYVSLS---YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF-----LNKIKSFHYVSTDSIY 461 (958)
Q Consensus 397 L~~~~~~~~l~---~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~-----~~~~k~~~~vST~~v~ 461 (958)
.+..+.+. .++|++||||+..... .+ ++...++|+.|+..+.+.+. +.+..+++++||....
T Consensus 64 ---~~~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~ 140 (244)
T d1pr9a_ 64 ---WEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQ 140 (244)
T ss_dssp ---HHHHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred ---HHHHHHHHHHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccc
Confidence 34455444 4789999999875432 12 33457789999888876543 2334578999987643
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA 537 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~ 537 (958)
... .....|+.||+.-+.+.+.. ..+|+++..+.||.|--+.....+...+.. +.
T Consensus 141 ~~~-----------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~----~~ 199 (244)
T d1pr9a_ 141 RAV-----------------TNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKA----KT 199 (244)
T ss_dssp SCC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHH----HH
T ss_pred ccc-----------------cchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHH----HH
Confidence 211 11236999999999988763 346999999999988654322222222211 11
Q ss_pred HHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 538 ITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 538 ~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
. ....|-. -+.-.+++|++++.|+.... -.|++.++..
T Consensus 200 ~--~~~~pl~----R~~~peevA~~v~fL~S~~a~~itG~~i~vDG 239 (244)
T d1pr9a_ 200 M--LNRIPLG----KFAEVEHVVNAILFLLSDRSGMTTGSTLPVEG 239 (244)
T ss_dssp H--HTTCTTC----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred H--HhcCCCC----CCcCHHHHHHHHHHHhCchhCCcCCcEEEECc
Confidence 1 1223421 13446789999998875432 3566766643
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=98.89 E-value=4.1e-08 Score=102.38 Aligned_cols=221 Identities=15% Similarity=0.073 Sum_probs=135.4
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|+||||||++-||..+.++|++++ ++|+...|... ..+.+.+.+.. ...++.++.+|++.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G-~~V~i~~r~~~---~l~~~~~~~~~---------~~~~~~~~~~D~s~~--- 67 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEK---ELDECLEIWRE---------KGLNVEGSVCDLLSR--- 67 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHHHH---------TTCCEEEEECCTTCH---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHH---HHHHHHHHHHh---------cCCCceEEEeecCCH---
Confidence 357899999999999999999999875 57777777421 12222222222 234677888998753
Q ss_pred CCcHHHHHHH----h----cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEec
Q psy4557 397 LKNQDEYVSL----S----YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVST 457 (958)
Q Consensus 397 L~~~~~~~~l----~----~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST 457 (958)
++.+.+ . ..+|+++|+|+..... ..+....++|+.|+..+.+.+. ..+..+++++||
T Consensus 68 ----~~~~~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS 143 (258)
T d1ae1a_ 68 ----TERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSS 143 (258)
T ss_dssp ----HHHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECC
T ss_pred ----HHHHHHHHHHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 333222 2 3589999999975321 1244567889999988887664 234468999998
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
....... .....|+.||..-+.+.+.. ..+|+.+..+.||.|..+.....++.......
T Consensus 144 ~~~~~~~-----------------~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~ 206 (258)
T d1ae1a_ 144 IAGFSAL-----------------PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKE 206 (258)
T ss_dssp GGGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHH
T ss_pred ccccccc-----------------ccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHH
Confidence 7653211 12347999999999988753 34699999999999976543222222111111
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEec
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFI 580 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~ 580 (958)
..+.... ..|-. .+...+++|++++.|+.... -.|..+.+.
T Consensus 207 ~~~~~~~--~~plg----R~~~pediA~~v~fL~S~~s~~itG~~i~vD 249 (258)
T d1ae1a_ 207 EIDNFIV--KTPMG----RAGKPQEVSALIAFLCFPAASYITGQIIWAD 249 (258)
T ss_dssp HHHHHHH--HSTTC----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred HHHHHHh--cCCCC----CCcCHHHHHHHHHHHhChhhCCCcCcEEEeC
Confidence 1222221 12311 25677899999999885332 356666664
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=98.89 E-value=1.8e-08 Score=104.67 Aligned_cols=217 Identities=15% Similarity=0.115 Sum_probs=136.4
Q ss_pred ccccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 316 KLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 316 ~~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
+.+++.+|||||++-||..+.+.|++++ ++|++..|.. +..+.+.+. .. ...++.++.+|++.+
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~---~~~~~~~~~---~~-------~~~~~~~~~~Dv~~~-- 66 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHS---DVGEKAAKS---VG-------TPDQIQFFQHDSSDE-- 66 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCH---HHHHHHHHH---HC-------CTTTEEEEECCTTCH--
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH---HHHHHHHHH---hC-------CCCcEEEEEccCCCH--
Confidence 4678999999999999999999998775 6777777742 122222222 11 135788999998853
Q ss_pred CCCcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCC-ccEEEEe
Q psy4557 396 GLKNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKI-KSFHYVS 456 (958)
Q Consensus 396 GL~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~-k~~~~vS 456 (958)
++.+.+. ..+|++||||+..... .+ +....++|+.|+..+.+.+. +.+. .+++++|
T Consensus 67 -----~~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~is 141 (251)
T d1zk4a1 67 -----DGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMS 141 (251)
T ss_dssp -----HHHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEEC
T ss_pred -----HHHHHHHHHHHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeee
Confidence 4444332 4689999999875321 12 33567799999999987654 2332 3788999
Q ss_pred cccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHH-H-----hhCCCCEEEEecCceeccCCCCCcChhHH
Q psy4557 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN-A-----GQMGLPVSIVRCGNIGGSLEFKNWNLVDL 530 (958)
Q Consensus 457 T~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~-a-----~~~glp~~I~R~g~i~G~~~~g~~n~~d~ 530 (958)
|.+.+-.. .....|+.||..-+.+.+. | ..+|+.+..+-||.|-.+......+....
T Consensus 142 S~~~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~~~ 204 (251)
T d1zk4a1 142 SIEGFVGD-----------------PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEA 204 (251)
T ss_dssp CGGGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHH
T ss_pred ccceeccC-----------------CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCHHHH
Confidence 86543110 1124799999999988764 2 24589999999998854321111111110
Q ss_pred HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 531 NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 531 ~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
. ......|-. -+.-.+++|++++.|+.... -.|.++++..
T Consensus 205 -~------~~~~~~pl~----R~~~pedvA~~v~fL~S~~s~~itG~~i~vDG 246 (251)
T d1zk4a1 205 -M------SQRTKTPMG----HIGEPNDIAYICVYLASNESKFATGSEFVVDG 246 (251)
T ss_dssp -H------TSTTTCTTS----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -H------HHHhCCCCC----CCcCHHHHHHHHHHHhCchhCCCcCcEEEECc
Confidence 0 001112211 13456889999998875432 3567777654
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Probab=98.88 E-value=5.5e-10 Score=94.47 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcCCC--CCCCCCchhhcCc-cHHHHHHHHHHHHHHhCCCCChHHHh--cCCcHHHHHHHHhc
Q psy4557 204 QSQKNIAKIWCKILNLY--TLDKDENFFEIGG-HSLTAALCISKMNEELSLNLSIKDLF--AHPTVQEMAALLEN 273 (958)
Q Consensus 204 ~~e~~l~~iw~~vL~~~--~i~~~~~FF~lGg-dSL~a~~l~~~i~~~~~~~l~~~~l~--~~pTi~~la~~i~~ 273 (958)
+.++.|.++|++++|.+ .++++.+||+.|| |||.+++|+..|+++||+++|..+++ +++|+++|++++.+
T Consensus 4 ~I~~~v~~il~~~l~~~~~~i~~d~~l~e~gglDSl~~vel~~~ie~~fgi~i~~~~l~~~~~~Tv~~l~~~v~~ 78 (80)
T d1dv5a_ 4 AIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQ 78 (80)
T ss_dssp HHHHHHHHHHHHHHTSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccchhhcCCCccccccCCCCHHHHHHHHHHHHHHHCCCCCHHHhhHHhCCCHHHHHHHHHH
Confidence 56889999999999986 5889999999986 99999999999999999999999998 67999999999864
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=98.88 E-value=6.6e-08 Score=99.74 Aligned_cols=210 Identities=14% Similarity=0.057 Sum_probs=133.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++|++|||||++-||..++++|++++ ++|+...|.. +++++.... -+...+.+|++.
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G-~~V~~~~r~~------~~l~~~~~~-----------~~~~~~~~Dv~~----- 60 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIEE------GPLREAAEA-----------VGAHPVVMDVAD----- 60 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH------HHHHHHHHT-----------TTCEEEECCTTC-----
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH------HHHHHHHHH-----------cCCeEEEEecCC-----
Confidence 56899999999999999999999874 6787777742 233333221 135677889874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
.++.+.+. ..+|++||||+..... .+ ++...++|+.|+..+.+.+. +.+...++.+||.+
T Consensus 61 --~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~ 138 (242)
T d1ulsa_ 61 --PASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV 138 (242)
T ss_dssp --HHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG
T ss_pred --HHHHHHHHHHHHHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecccc
Confidence 34444432 4689999999965321 22 34567789999998887654 23334566677644
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
..+. .....|+.||..-+.+.+.. ..+|+.+..+.||.|--+... ...+...
T Consensus 139 ~~~~------------------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~---~~~~~~~--- 194 (242)
T d1ulsa_ 139 YLGN------------------LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTA---KVPEKVR--- 194 (242)
T ss_dssp GGCC------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTS---SSCHHHH---
T ss_pred ccCC------------------CCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhh---cCCHHHH---
Confidence 3221 11246999999999888653 356999999999998644321 1112111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
+... ...|-. -+.-.+++|++++.|+.... -.|.+.++...
T Consensus 195 ~~~~--~~~pl~----R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG 237 (242)
T d1ulsa_ 195 EKAI--AATPLG----RAGKPLEVAYAALFLLSDESSFITGQVLFVDGG 237 (242)
T ss_dssp HHHH--HTCTTC----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHH--hcCCCC----CCCCHHHHHHHHHHHhchhhCCCCCcEEEECCC
Confidence 1111 122321 13345788999998875432 35677777543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=2.8e-08 Score=102.64 Aligned_cols=213 Identities=14% Similarity=0.077 Sum_probs=135.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++++|||||++-||..+.++|++++ ++|++..|.. +++.+.... ...+..+..|++.
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~------~~l~~~~~~----------~~~~~~~~~Dv~~----- 61 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTN------SDLVSLAKE----------CPGIEPVCVDLGD----- 61 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH------HHHHHHHHH----------STTCEEEECCTTC-----
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCH------HHHHHHHHh----------cCCCeEEEEeCCC-----
Confidence 57899999999999999999998764 6787777742 223332221 1356778888874
Q ss_pred CcHHHHHHHh---cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhcc-----CCCccEEEEecccccC
Q psy4557 398 KNQDEYVSLS---YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSFL-----NKIKSFHYVSTDSIYP 462 (958)
Q Consensus 398 ~~~~~~~~l~---~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~~-----~~~k~~~~vST~~v~~ 462 (958)
.+..+.+. .++|++||||+..... .+ ++...++|+.|+..+.+.+.. .+..+++++||.+...
T Consensus 62 --~~~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~ 139 (242)
T d1cyda_ 62 --WDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV 139 (242)
T ss_dssp --HHHHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS
T ss_pred --HHHHHHHHHHcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc
Confidence 34455554 4689999999975431 12 345677899999988876532 2335788998875432
Q ss_pred CCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHH
Q psy4557 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI 538 (958)
Q Consensus 463 ~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~ 538 (958)
.. .....|+.||..-+.+.+.. ..+|+++..+-||.|-.+.....+...++...+.
T Consensus 140 ~~-----------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~--- 199 (242)
T d1cyda_ 140 TF-----------------PNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLK--- 199 (242)
T ss_dssp CC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHH---
T ss_pred cC-----------------CccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHH---
Confidence 11 11246999999999988763 3469999999999886432111111122222211
Q ss_pred HHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 539 TRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 539 ~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
. ..|-. -+.-.+++|++++.|+.... -.|++.++..
T Consensus 200 -~--~~pl~----R~~~peeva~~v~fL~S~~s~~itG~~i~vDG 237 (242)
T d1cyda_ 200 -E--RHPLR----KFAEVEDVVNSILFLLSDRSASTSGGGILVDA 237 (242)
T ss_dssp -H--HSTTS----SCBCHHHHHHHHHHHHSGGGTTCCSSEEEEST
T ss_pred -h--cCCCC----CCcCHHHHHHHHHHHhCchhcCcCCceEEeCc
Confidence 1 12311 13446889999998875432 3567777653
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=98.88 E-value=3.1e-08 Score=103.40 Aligned_cols=221 Identities=15% Similarity=0.087 Sum_probs=137.0
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++-||..+.++|++++ ++|+...|..+ ..+.+.+.+.. ...++.++.+|++.+
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~---~l~~~~~~~~~---------~g~~~~~~~~Dv~~~--- 69 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQK---ELNDCLTQWRS---------KGFKVEASVCDLSSR--- 69 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHHHH---------TTCEEEEEECCTTCH---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHH---HHHHHHHHHHh---------cCCCceEEEeeCCCH---
Confidence 367899999999999999999999875 67877777421 22222222221 235778889998753
Q ss_pred CCcHHHHHHH----h---c-ccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEec
Q psy4557 397 LKNQDEYVSL----S---Y-EIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVST 457 (958)
Q Consensus 397 L~~~~~~~~l----~---~-~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST 457 (958)
++.+.+ . . .+|++||||+..... .+ ++...++|+.|+..+.+.+. +.+..+++++||
T Consensus 70 ----~~v~~~~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS 145 (259)
T d2ae2a_ 70 ----SERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISS 145 (259)
T ss_dssp ----HHHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECC
T ss_pred ----HHHHHHHHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccc
Confidence 333332 1 2 589999999975432 12 34567899999998887654 334468999998
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
.+..... .....|+.||..-+.+.+.. ..+|+.+..+-||.|--+.....+...+ ...
T Consensus 146 ~~~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~-~~~ 207 (259)
T d2ae2a_ 146 VSGALAV-----------------PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPE-QKE 207 (259)
T ss_dssp GGGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHH-HHH
T ss_pred ccccccc-----------------ccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchh-hHH
Confidence 6543210 11347999999999988753 2468999999999885432111111111 011
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
.++... ...|-. -+.-.+++|++++.|+.... -.|++.++..
T Consensus 208 ~~~~~~--~~~pl~----R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG 251 (259)
T d2ae2a_ 208 NLNKLI--DRCALR----RMGEPKELAAMVAFLCFPAASYVTGQIIYVDG 251 (259)
T ss_dssp HHHHHH--HTSTTC----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHHHHH--hcCCCC----CCcCHHHHHHHHHHHhCchhCCCcCcEEEECC
Confidence 111111 122321 13445789999998875432 2567777653
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=98.86 E-value=1.4e-08 Score=106.05 Aligned_cols=224 Identities=13% Similarity=0.061 Sum_probs=137.7
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++|++|||||++=||..+.+.|++++ ++|++..|... ..+...+.+... ....++..+.+|++.+
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~---~l~~~~~~~~~~-------~~~~~~~~~~~Dvt~~---- 67 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSE---GLEASKAAVLET-------APDAEVLTTVADVSDE---- 67 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHHHHH-------CTTCCEEEEECCTTSH----
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHH---HHHHHHHHHHhh-------CCCCeEEEEeccCCCH----
Confidence 56899999999999999999999875 68877777432 222222222111 1235788899999853
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCccc-----C---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLIL-----P---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~~-----~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
++.+.+. ..+|++||||+...... + ++...++|+.|+..+.+.+. ..+..+++++||.
T Consensus 68 ---~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~ 144 (258)
T d1iy8a_ 68 ---AQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASV 144 (258)
T ss_dssp ---HHHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccH
Confidence 4444432 47999999998643221 2 34567789999999887653 2334579999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcCh--hHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNL--VDLNL 532 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~--~d~~~ 532 (958)
+..-.. .....|+.||..-+.+.+.. ..+|+.+..+-||.|..+.....+.. .+...
T Consensus 145 ~~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~ 207 (258)
T d1iy8a_ 145 GGIRGI-----------------GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPR 207 (258)
T ss_dssp GGTSBC-----------------SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHH
T ss_pred hhccCC-----------------CCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHH
Confidence 643210 11247999999999888653 35699999999998854321000000 00000
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
...+.. ....|-. -+.-.+.+|++++.|+.... -.|.+.++...
T Consensus 208 ~~~~~~--~~~~pl~----R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG 253 (258)
T d1iy8a_ 208 KAAEEF--IQVNPSK----RYGEAPEIAAVVAFLLSDDASYVNATVVPIDGG 253 (258)
T ss_dssp HHHHHH--HTTCTTC----SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHH--HhcCCCC----CCcCHHHHHHHHHHHhCchhcCCcCceEEcCcc
Confidence 111111 1122311 12345789999999885432 35677777543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=98.86 E-value=1.2e-08 Score=106.22 Aligned_cols=214 Identities=14% Similarity=0.049 Sum_probs=136.1
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++=||..++++|+++ +++|+...|.. +++.+.... ...++.++.+|++.
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~------~~~~~~~~~---------~~~~~~~~~~Dv~~---- 62 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAA-GARVVLADVLD------EEGAATARE---------LGDAARYQHLDVTI---- 62 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCH------HHHHHHHHT---------TGGGEEEEECCTTC----
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCH------HHHHHHHHH---------hCCceEEEEcccCC----
Confidence 46789999999999999999999976 46777777642 233333222 23578889999874
Q ss_pred CCcHHHHHHHh-------cccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 397 LKNQDEYVSLS-------YEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 397 L~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
.++.+.+. ..+|++||||+..... . .++....+|+.|+..+.+.+. ..+..+++++||.
T Consensus 63 ---~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~ 139 (254)
T d1hdca_ 63 ---EEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSA 139 (254)
T ss_dssp ---HHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred ---HHHHHHHHHHHHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccc
Confidence 34444442 4789999999875321 1 234567899999999887663 2344689999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+.+... .....|+.||..-+.+.+.. ..+|+.+..+-||.|-.+ +....
T Consensus 140 ~~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~----------~~~~~ 192 (254)
T d1hdca_ 140 AGLMGL-----------------ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP----------MTAET 192 (254)
T ss_dssp GGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH----------HHHHH
T ss_pred hhcccc-----------------cchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCc----------cchhc
Confidence 653211 11247999999999888753 356999999999988432 11110
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
... .............-.+--+++|++++.|+.... -.|.++++..
T Consensus 193 ~~~-~~~~~~~~~pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vDG 240 (254)
T d1hdca_ 193 GIR-QGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDG 240 (254)
T ss_dssp TCC-CSTTSCTTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CHH-HHHHHHhCCCCCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeCC
Confidence 000 000000001000111234789999998875432 3578888864
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Probab=98.86 E-value=1.2e-09 Score=93.73 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcC----C--CCCCCCCchhhcCccHHHHHHHHHHHHHHhCCCCChHHHhcCCcHHHHHHHHhc
Q psy4557 206 QKNIAKIWCKILN----L--YTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLEN 273 (958)
Q Consensus 206 e~~l~~iw~~vL~----~--~~i~~~~~FF~lGgdSL~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~la~~i~~ 273 (958)
..+|.+++.+.++ . +.+..+.+|+++|+|||.++++..+|+++||+++|...+|++||+++|+++|..
T Consensus 7 ~d~l~~~l~e~~~~~~g~~~~~i~~d~~f~dlG~DSl~~~~l~~~l~~~~g~~l~~~~~~~~~Tv~~l~~~i~~ 80 (86)
T d2af8a_ 7 TDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLING 80 (86)
T ss_dssp HHHHHHHHHHTTCCCSCCCCSSCSCSSSHHHHTCSSHHHHHHHHHHHHHHTCCCCCSTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCccccccCCCHHHcCCCHHHHHHHHHHHHHHHccCcCHHHHHcCCCHHHHHHHHHH
Confidence 3446667777664 3 357788999999999999999999999999999999999999999999999975
|
| >d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=3.2e-09 Score=96.46 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCCC--CCCCCCchh-hcCccHHHHHHHHHHHHHHhCCCCChHHHhcCCcHHHHHHHHhcc
Q psy4557 204 QSQKNIAKIWCKILNLY--TLDKDENFF-EIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENK 274 (958)
Q Consensus 204 ~~e~~l~~iw~~vL~~~--~i~~~~~FF-~lGgdSL~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~la~~i~~~ 274 (958)
+....|.++|+++||++ .++.+.+|| ++|+|||++++|+..|+++||+.++...+|++||+++|+.+|...
T Consensus 7 ~i~~~l~~iv~~~l~~~~~~i~~~~~~~~dlG~DSl~~~~l~~~le~~f~i~i~~~~~~~~~Tv~~l~~~l~~~ 80 (115)
T d1klpa_ 7 EIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKL 80 (115)
T ss_dssp HHHHHHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCccccCcccchhhhcccchhHHHHHHHHHHHHHCCCCCHHHHHhCccHHHHHHHHHHH
Confidence 46788999999999986 688899998 699999999999999999999999999999999999999999764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=8.2e-09 Score=106.84 Aligned_cols=212 Identities=11% Similarity=0.077 Sum_probs=136.3
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++|+++||||++-||..+.+.|++++ ++|+...|.. +++++....+ ..+...+.+|++.
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G-~~Vv~~~r~~------~~l~~~~~~~---------~~~~~~~~~Dv~~----- 61 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARG-AKVIGTATSE------NGAQAISDYL---------GANGKGLMLNVTD----- 61 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSH------HHHHHHHHHH---------GGGEEEEECCTTC-----
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCH------HHHHHHHHHh---------CCCCcEEEEEecC-----
Confidence 56899999999999999999998774 6777777742 2233322222 2467778889874
Q ss_pred CcHHHHHHHh-------cccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEeccc
Q psy4557 398 KNQDEYVSLS-------YEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDS 459 (958)
Q Consensus 398 ~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~ 459 (958)
.++.+.+. ..+|++||+|+..... . .++...++|+.|+..+.+.+. +.+..+++++||..
T Consensus 62 --~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~ 139 (243)
T d1q7ba_ 62 --PASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVV 139 (243)
T ss_dssp --HHHHHHHHHHHHHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHH
T ss_pred --HHHhhhhhhhhhcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchh
Confidence 34444432 3799999999865331 1 233567799999999887764 23346899999876
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHH
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYIL 535 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~ 535 (958)
..-.. .....|+.||..-+.+.+.. ..+|+.+..+.||.|--+..... ..+..
T Consensus 140 ~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~--~~~~~---- 196 (243)
T d1q7ba_ 140 GTMGN-----------------GGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRAL--SDDQR---- 196 (243)
T ss_dssp HHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS--CHHHH----
T ss_pred hcCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhh--hhhHH----
Confidence 43211 11247999999999888753 35699999999998853321111 11111
Q ss_pred HHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 536 KAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 536 ~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
... ....|-. .+...+++|++++.++.... -.|++.++..
T Consensus 197 ~~~--~~~~pl~----R~~~pedvA~~v~fL~S~~s~~itGq~i~vdG 238 (243)
T d1q7ba_ 197 AGI--LAQVPAG----RLGGAQEIANAVAFLASDEAAYITGETLHVNG 238 (243)
T ss_dssp HHH--HTTCTTS----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHH--HhcCCCC----CCCCHHHHHHHHHHHhCchhcCCcCCeEEECC
Confidence 111 1123321 24557889999998875432 3567777754
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.1e-08 Score=106.23 Aligned_cols=168 Identities=17% Similarity=0.164 Sum_probs=111.1
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+.||||||++=||..+.+.|++++ ++|+.+.+...+....+++.+..... .....++..+..|++.
T Consensus 3 kVvlITGassGIG~a~A~~la~~G-a~v~~v~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~Dv~~------- 68 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDP-SQSFKVYATLRDLKTQGRLWEAARAL------ACPPGSLETLQLDVRD------- 68 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCT-TCCEEEEEEESCGGGTHHHHHHHHHT------TCCTTSEEEEECCTTC-------
T ss_pred CEEEEccCCCHHHHHHHHHHHHCC-CCeEEEEEecCChhhhHHHHHHHHHH------hccCCceEEEeccccc-------
Confidence 457999999999999999998765 34333222221222234444443322 1224688999999885
Q ss_pred HHHHHHHh-----cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccccCC
Q psy4557 400 QDEYVSLS-----YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSIYPS 463 (958)
Q Consensus 400 ~~~~~~l~-----~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v~~~ 463 (958)
.++...+. ..+|+++|+|+..... .+ +....++|+.|+.++.+.+. +.+..+++++||.+..-+
T Consensus 69 ~~~~~~~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~ 148 (285)
T d1jtva_ 69 SKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMG 148 (285)
T ss_dssp HHHHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSC
T ss_pred hHhhhhhhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCC
Confidence 34555443 4689999999875432 12 33567799999999887653 234468999998754321
Q ss_pred CCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceec
Q psy4557 464 TSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGG 518 (958)
Q Consensus 464 ~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G 518 (958)
. .....|+.||+.-+.+.+.. ..+|+.++.+.||.|--
T Consensus 149 ~-----------------~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T 190 (285)
T d1jtva_ 149 L-----------------PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHT 190 (285)
T ss_dssp C-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC
T ss_pred C-----------------CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCC
Confidence 0 11246999999999888653 34699999999998853
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.3e-08 Score=105.25 Aligned_cols=165 Identities=15% Similarity=0.036 Sum_probs=114.1
Q ss_pred ccccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 316 KLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 316 ~~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
+..++.++||||++=||..+..+|+++ +.+|++..|..+ ..+.+.+.+.. ...++..+.+|++++
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~---~l~~~~~~~~~---------~~~~~~~~~~Dvs~~-- 68 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKH---GLEETAAKCKG---------LGAKVHTFVVDCSNR-- 68 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHH---HHHHHHHHHHH---------TTCCEEEEECCTTCH--
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHH---HHHHHHHHHHh---------cCCcEEEEEeeCCCH--
Confidence 346789999999999999999999877 478888888432 22233222221 235788999999854
Q ss_pred CCCcHHHHHHH-------hcccCEEEEcccccCccc-------ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEec
Q psy4557 396 GLKNQDEYVSL-------SYEIDMIIHAAAFVNLIL-------PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVST 457 (958)
Q Consensus 396 GL~~~~~~~~l-------~~~vd~IiH~AA~v~~~~-------~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST 457 (958)
+..+.+ ...+|++||||+...+.. .++.++.+|+.|+.++.+.+. +.+..+++++||
T Consensus 69 -----~~v~~~~~~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS 143 (244)
T d1yb1a_ 69 -----EDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVAS 143 (244)
T ss_dssp -----HHHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred -----HHHHHHHHHHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeec
Confidence 333332 246899999999764321 234567899999999887653 344468999999
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----h---CCCCEEEEecCcee
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----Q---MGLPVSIVRCGNIG 517 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~---~glp~~I~R~g~i~ 517 (958)
.+.+-+. .....|+.||+.-+.+.+..+ . .|+.++.+.||.|-
T Consensus 144 ~~~~~~~-----------------~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~ 193 (244)
T d1yb1a_ 144 AAGHVSV-----------------PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVN 193 (244)
T ss_dssp CC-CCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHH
T ss_pred chhcCCC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCC
Confidence 7653210 012369999999888776522 1 48999999999873
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=98.83 E-value=1.2e-08 Score=111.40 Aligned_cols=206 Identities=16% Similarity=0.094 Sum_probs=134.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh----hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI----DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~----~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
-|.+|||||||=||..++++|.++|+.|.+++++. .....+ .. -...++.++.+|++|.+.+..++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~-~~--~~~~~i~~~~~Di~d~~~~~~~~------- 71 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANL-EA--ILGDRVELVVGDIADAELVDKLA------- 71 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGT-GG--GCSSSEEEEECCTTCHHHHHHHH-------
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHH-HH--hhcCCeEEEEccCCCHHHHHHHH-------
Confidence 47899999999999999999999998765555431 001100 01 12356888999999988876654
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-------------
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR------------- 858 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~------------- 858 (958)
...|.+++.|+...... ...+....+++|+.|+..++..+... + .++|++||....-
T Consensus 72 ~~~~~v~~~a~~~~~~~----~~~~~~~~~~~N~~g~~nll~~~~~~----~--~k~i~~ss~~vyg~~~~~~~~~~~~~ 141 (346)
T d1oc2a_ 72 AKADAIVHYAAESHNDN----SLNDPSPFIHTNFIGTYTLLEAARKY----D--IRFHHVSTDEVYGDLPLREDLPGHGE 141 (346)
T ss_dssp TTCSEEEECCSCCCHHH----HHHCCHHHHHHHTHHHHHHHHHHHHH----T--CEEEEEEEGGGGCCBCCGGGSTTTTC
T ss_pred hhhhhhhhhhhcccccc----hhhCcccceeeehHhHHhhhhhhccc----c--ccccccccceEecccCcccccccccc
Confidence 35678899988764321 11233577899999999988766432 1 3677777655321
Q ss_pred ----------CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhhh-c-----c---
Q psy4557 859 ----------PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDKY-D-----I--- 918 (958)
Q Consensus 859 ----------~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~~-~-----~--- 918 (958)
+....+.|+.+|.+.+.+.+..+.+. |+++.++.|+.|.-|....... ...+... . .
T Consensus 142 ~~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~---~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~~~ 218 (346)
T d1oc2a_ 142 GPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF---GVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGE 218 (346)
T ss_dssp STTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETT
T ss_pred CcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHc---CCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEeCC
Confidence 01123569999999999999888775 8999999998887653221110 0000000 0 0
Q ss_pred -ccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy4557 919 -SKAVPVLTTKEISQSIIFALLQPSHS 944 (958)
Q Consensus 919 -~~~~~~~~p~~ia~~i~~~l~~~~~~ 944 (958)
......+..+|+|++++.++..+...
T Consensus 219 g~~~r~~i~v~D~a~a~~~~~~~~~~~ 245 (346)
T d1oc2a_ 219 GKNVRDWIHTNDHSTGVWAILTKGRMG 245 (346)
T ss_dssp SCCEEECEEHHHHHHHHHHHHHHCCTT
T ss_pred CCccccccchhhHHHHHHHHHhhcccC
Confidence 01112567899999998877665543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.82 E-value=5.1e-08 Score=102.10 Aligned_cols=226 Identities=12% Similarity=0.064 Sum_probs=130.6
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|.+|||||++-||..+.++|++++ ++|+...|..+ ..+.+.+.+...+. ...++.++.+|++.+
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~r~~~---~l~~~~~~l~~~~~------~~~~~~~~~~Dvt~~--- 69 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAE---RLEETRQQILAAGV------SEQNVNSVVADVTTD--- 69 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHHHHTTC------CGGGEEEEECCTTSH---
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHH---HHHHHHHHHHhcCC------CcCceEEEEccCCCH---
Confidence 467899999999999999999999875 67877777432 22333333322211 134788999998843
Q ss_pred CCcHHHHHHHh-------cccCEEEEcccccCc---c-----cC---hHHHHhhhHHHHHHHHHhhcc----CCCccEEE
Q psy4557 397 LKNQDEYVSLS-------YEIDMIIHAAAFVNL---I-----LP---YNALYKSNVLATKNLIEFSFL----NKIKSFHY 454 (958)
Q Consensus 397 L~~~~~~~~l~-------~~vd~IiH~AA~v~~---~-----~~---~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~ 454 (958)
++.+.+. ..+|++||||+.... . .+ ++...++|+.|+..+.+.+.. .+ ..++.
T Consensus 70 ----~~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~ 144 (264)
T d1spxa_ 70 ----AGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVN 144 (264)
T ss_dssp ----HHHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEE
T ss_pred ----HHHHHHHHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc-Cccee
Confidence 4444432 478999999986421 1 12 445677899999888776642 22 34555
Q ss_pred Eecc-cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhH
Q psy4557 455 VSTD-SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVD 529 (958)
Q Consensus 455 vST~-~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d 529 (958)
++|. +..... .....|+.||..-+.+.+.. ..+|+.+..+-||.|--+.....+...+
T Consensus 145 ~~S~~~~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~ 207 (264)
T d1spxa_ 145 ISSIASGLHAT-----------------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEE 207 (264)
T ss_dssp ECCTTSSSSCC-----------------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC---------
T ss_pred eeeeccccccC-----------------CCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHH
Confidence 5543 321100 11236999999999888653 3569999999999886443222111111
Q ss_pred HHHHHHHHHHH-hCCcCCCCCcCCcccHHHHHHHHHHHhcCc---CCCCceEEecC
Q psy4557 530 LNLYILKAITR-LGYAPDIDWYLEFTPVDFLTKSLVQLTTNV---NNANKIYNFIN 581 (958)
Q Consensus 530 ~~~~l~~~~~~-~g~~P~~~~~~~~~pVD~va~aiv~l~~~~---~~~~~v~h~~n 581 (958)
........... ....|-. -+.-.+++|++++.|+..+ .-.|+++.+..
T Consensus 208 ~~~~~~~~~~~~~~~~Pl~----R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDG 259 (264)
T d1spxa_ 208 TSKKFYSTMATMKECVPAG----VMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDG 259 (264)
T ss_dssp -----HHHHHHHHHHCTTS----SCBCHHHHHHHHHHHHCHHHHTTCCSCEEEEST
T ss_pred HHHHHHHHHHHHHhcCCCC----CCcCHHHHHHHHHHHhCCcccCCccCceEEeCC
Confidence 11111111000 1122321 1334578899999887532 23567776653
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.82 E-value=1.2e-08 Score=105.22 Aligned_cols=205 Identities=13% Similarity=0.139 Sum_probs=132.1
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++-||..+.++|+++ +++|++..|.... .+++..+..|++.+
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~-----------------------~~~~~~~~~Dv~~~--- 57 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAAD-GHKVAVTHRGSGA-----------------------PKGLFGVEVDVTDS--- 57 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSSCC-----------------------CTTSEEEECCTTCH---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCcch-----------------------hcCceEEEEecCCH---
Confidence 46789999999999999999999876 4788887775432 23566778888753
Q ss_pred CCcHHHHHHH-------hcccCEEEEcccccCc----ccC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 397 LKNQDEYVSL-------SYEIDMIIHAAAFVNL----ILP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 397 L~~~~~~~~l-------~~~vd~IiH~AA~v~~----~~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
++.+.+ ...+|++||||+.... ..+ ++...++|+.|+..+.+.+. +.+..+++++||.
T Consensus 58 ----~~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~ 133 (237)
T d1uzma1 58 ----DAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSV 133 (237)
T ss_dssp ----HHHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred ----HHHHHHHHHHHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcch
Confidence 333333 2478999999996432 112 34567899999888876543 3455689999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+..... .....|+.||..-+.+.+.. ..+|+.+..+.||.|--+.... + .+ ..
T Consensus 134 ~~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~-~--~~---~~ 190 (237)
T d1uzma1 134 SGLWGI-----------------GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA-L--DE---RI 190 (237)
T ss_dssp CC----------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-S--CH---HH
T ss_pred hhccCC-----------------cccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhc-c--CH---HH
Confidence 543210 11247999999999888653 3469999999999885332100 0 11 11
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
.+.. ....|-. -+.-.+++|++++.++.... -.|++.++..
T Consensus 191 ~~~~--~~~~pl~----R~~~pedvA~~v~fL~S~~s~~itG~~i~vdG 233 (237)
T d1uzma1 191 QQGA--LQFIPAK----RVGTPAEVAGVVSFLASEDASYISGAVIPVDG 233 (237)
T ss_dssp HHHH--GGGCTTC----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHHH--HhcCCCC----CCcCHHHHHHHHHHHhCchhcCCcCCeEEECC
Confidence 1111 1223321 13445788999998875432 3567777653
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.82 E-value=6.8e-08 Score=101.54 Aligned_cols=228 Identities=14% Similarity=0.061 Sum_probs=136.5
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++-||..++++|++++ ++|+...|.. +..+.+.+.+...+. ...++..+.+|++.+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G-a~V~l~~r~~---~~l~~~~~~l~~~~~------~~~~~~~~~~Dvs~~--- 69 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSS---ERLEETRQIILKSGV------SEKQVNSVVADVTTE--- 69 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCH---HHHHHHHHHHHTTTC------CGGGEEEEECCTTSH---
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCC-CEEEEEECCH---HHHHHHHHHHHhcCC------CCCceEEEEccCCCH---
Confidence 467899999999999999999998775 6787777742 223333333332211 135788999999853
Q ss_pred CCcHHHHHHHh-------cccCEEEEcccccCc---c-----cC---hHHHHhhhHHHHHHHHHhhcc----CCCccEEE
Q psy4557 397 LKNQDEYVSLS-------YEIDMIIHAAAFVNL---I-----LP---YNALYKSNVLATKNLIEFSFL----NKIKSFHY 454 (958)
Q Consensus 397 L~~~~~~~~l~-------~~vd~IiH~AA~v~~---~-----~~---~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~ 454 (958)
++.+.+. ..+|++||||+.... . .+ +....++|+.|+..+.+.+.. .+-..++.
T Consensus 70 ----~~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~ 145 (272)
T d1xkqa_ 70 ----DGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNV 145 (272)
T ss_dssp ----HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred ----HHHHHHHHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccc
Confidence 4444432 478999999987532 1 11 345567899999998876642 22233444
Q ss_pred EecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHH
Q psy4557 455 VSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDL 530 (958)
Q Consensus 455 vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~ 530 (958)
+||.+..... .....|+.||..-+.+.+.. ..+|+.+..+-||.|-.+...........
T Consensus 146 ~Ss~a~~~~~-----------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~ 208 (272)
T d1xkqa_ 146 SSIVAGPQAQ-----------------PDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQA 208 (272)
T ss_dssp CCGGGSSSCC-----------------CSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHH
T ss_pred cchhccccCC-----------------CCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHH
Confidence 4443321100 11246999999999888653 35699999999998853321111111111
Q ss_pred HHHHHHHHHHh-CCcCCCCCcCCcccHHHHHHHHHHHhcCc---CCCCceEEecCC
Q psy4557 531 NLYILKAITRL-GYAPDIDWYLEFTPVDFLTKSLVQLTTNV---NNANKIYNFINT 582 (958)
Q Consensus 531 ~~~l~~~~~~~-g~~P~~~~~~~~~pVD~va~aiv~l~~~~---~~~~~v~h~~n~ 582 (958)
........... ...|-. -+.-.+++|++++.|+... .-.|+++.+...
T Consensus 209 ~~~~~~~~~~~~~~~Plg----R~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG 260 (272)
T d1xkqa_ 209 SQKFYNFMASHKECIPIG----AAGKPEHIANIILFLADRNLSFYILGQSIVADGG 260 (272)
T ss_dssp HHHHHHHHHHCTTTCTTS----SCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred HHHHHHHHHHHhcCCCCC----CCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcC
Confidence 11111111111 222311 1334577999999887532 235777777654
|
| >d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Bacillus subtilis [TaxId: 1423]
Probab=98.82 E-value=5e-09 Score=87.01 Aligned_cols=68 Identities=16% Similarity=0.306 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCC--CCCCCCchh-hcCccHHHHHHHHHHHHHHhCCCCChHHHhcCCcHHHHHHHH
Q psy4557 204 QSQKNIAKIWCKILNLY--TLDKDENFF-EIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALL 271 (958)
Q Consensus 204 ~~e~~l~~iw~~vL~~~--~i~~~~~FF-~lGgdSL~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~la~~i 271 (958)
++..++.++|+++|+.+ .+.++.+|+ ++|.|||+++++...|+++||+++|..++++++|+++++++|
T Consensus 3 dv~~~v~~iia~~l~~~~~~i~~~~~~~~DlG~DSl~~vel~~~le~~f~i~i~~~~~~~~~Tv~~l~~~i 73 (74)
T d1f80d_ 3 DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYI 73 (74)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCcCHHHcCCCccHHHhcCccHhHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHH
Confidence 45678999999999986 689999998 599999999999999999999999999999999999999886
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.82 E-value=1.4e-08 Score=105.59 Aligned_cols=216 Identities=12% Similarity=0.111 Sum_probs=137.9
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.+.|.+|||||++-||..+.+.|+++ +++|++..|.. +..+.+.+.+.. ...++..+.+|++.
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~-Ga~V~~~~r~~---~~l~~~~~~l~~---------~g~~~~~~~~Dvt~---- 70 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKS-VSHVICISRTQ---KSCDSVVDEIKS---------FGYESSGYAGDVSK---- 70 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTT-SSEEEEEESSH---HHHHHHHHHHHT---------TTCCEEEEECCTTC----
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCH---HHHHHHHHHHHh---------cCCcEEEEEccCCC----
Confidence 35789999999999999999998866 46888877742 222333333322 23578889999885
Q ss_pred CCcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 397 LKNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 397 L~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
.++.+.+. ..+|++||+|+..... ..++....+|+.|+..+.+.+. +.+..+++++||.
T Consensus 71 ---~~~v~~~~~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~ 147 (251)
T d2c07a1 71 ---KEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSI 147 (251)
T ss_dssp ---HHHHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCT
T ss_pred ---HHHHHHHHHHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCH
Confidence 34444442 4789999999975432 1234567789999988887653 2344689999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
...-.. .....|+.||..-+.+.+.. ..+|+.+..+.||.|-.+..... . .+..
T Consensus 148 ~~~~~~-----------------~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~-~-~~~~--- 205 (251)
T d2c07a1 148 VGLTGN-----------------VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI-S-EQIK--- 205 (251)
T ss_dssp HHHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C-C-HHHH---
T ss_pred HhcCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccccc-C-HHHH---
Confidence 643110 11236999999999988763 35699999999998864432111 1 1211
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
+... ...|-. -+.-.+.+|++++.|+.... -.|++.++..
T Consensus 206 -~~~~--~~~pl~----R~~~pedvA~~v~fL~S~~s~~itG~~i~vDG 247 (251)
T d2c07a1 206 -KNII--SNIPAG----RMGTPEEVANLACFLSSDKSGYINGRVFVIDG 247 (251)
T ss_dssp -HHHH--TTCTTS----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -HHHH--hcCCCC----CCcCHHHHHHHHHHHhCchhCCCcCcEEEECC
Confidence 1111 223421 13456778999998875432 2567777653
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Probab=98.81 E-value=1.9e-09 Score=94.19 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=56.8
Q ss_pred HHHHHHHHc----CC--CCCCCCCchhhcCccHHHHHHHHHHHHHHhCCCCChHHHhcCCcHHHHHHHHhcc
Q psy4557 209 IAKIWCKIL----NL--YTLDKDENFFEIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENK 274 (958)
Q Consensus 209 l~~iw~~vL----~~--~~i~~~~~FF~lGgdSL~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~la~~i~~~ 274 (958)
|.+++++++ +. +.+..+.+|+++|+|||.+++|..+|+++||++++...+|++||+++|+++|...
T Consensus 9 l~~~lre~~~~~~~~~~~~i~~d~~f~dlG~DSl~~~el~~~le~~~gv~l~~~~~~~~~Ti~~l~~~l~~~ 80 (95)
T d1nq4a_ 9 LLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNAS 80 (95)
T ss_dssp HHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhCCChhhcccCCCHHHcCCcHHHHHHHHHHHHHHhcCCCCHHHHhcCCCHHHHHHHHHHh
Confidence 445555554 44 3577899999999999999999999999999999999999999999999999653
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=98.80 E-value=2.6e-08 Score=104.07 Aligned_cols=165 Identities=15% Similarity=0.162 Sum_probs=114.7
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++-||..+.+.|++++ ++|+...|.. +..+.+.+.+.. ...++..+.+|++.+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~---~~l~~~~~~~~~---------~g~~~~~~~~Dv~~~--- 66 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNR---EALEKAEASVRE---------KGVEARSYVCDVTSE--- 66 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH---HHHHHHHHHHHT---------TTSCEEEEECCTTCH---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH---HHHHHHHHHHHh---------cCCcEEEEEccCCCH---
Confidence 467899999999999999999998775 6787777742 223333333221 235788899998853
Q ss_pred CCcHHHHHHH-------hcccCEEEEcccccCcccC--------hHHHHhhhHHHHHHHHHhhcc----CCCccEEEEec
Q psy4557 397 LKNQDEYVSL-------SYEIDMIIHAAAFVNLILP--------YNALYKSNVLATKNLIEFSFL----NKIKSFHYVST 457 (958)
Q Consensus 397 L~~~~~~~~l-------~~~vd~IiH~AA~v~~~~~--------~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST 457 (958)
++.+.+ ...+|++||+|+......+ ++...++|+.|+..+.+.+.. .+.-+++++||
T Consensus 67 ----~~v~~~~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS 142 (260)
T d1zema1 67 ----EAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTAS 142 (260)
T ss_dssp ----HHHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred ----HHHHHHHHHHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeec
Confidence 333333 2479999999996543222 334567899999988876532 33358999998
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceec
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGG 518 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G 518 (958)
.+.+... .....|+.||..-+.+.+.. ..+|+.+..+-||.|--
T Consensus 143 ~~~~~~~-----------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T 190 (260)
T d1zema1 143 MAGVKGP-----------------PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGP 190 (260)
T ss_dssp HHHHSCC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCS
T ss_pred hhhccCC-----------------cchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccC
Confidence 7653211 01236999999999888753 34699999999998854
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.80 E-value=1.6e-07 Score=98.75 Aligned_cols=228 Identities=14% Similarity=0.051 Sum_probs=138.9
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++-||..++++|++++ ++|+...|.. +..+.+.+.+...+. ...++..+.+|++.+
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~---~~l~~~~~~i~~~~~------~~~~~~~~~~Dv~~~--- 68 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNE---DRLEETKQQILKAGV------PAEKINAVVADVTEA--- 68 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCH---HHHHHHHHHHHHTTC------CGGGEEEEECCTTSH---
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCH---HHHHHHHHHHHHcCC------CCcceEEEEeeCCCH---
Confidence 357899999999999999999999874 6787777742 223333333333221 135788999999853
Q ss_pred CCcHHHHHHHh-------cccCEEEEcccccCcc------cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEe
Q psy4557 397 LKNQDEYVSLS-------YEIDMIIHAAAFVNLI------LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVS 456 (958)
Q Consensus 397 L~~~~~~~~l~-------~~vd~IiH~AA~v~~~------~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vS 456 (958)
++.+.+. ..+|++||||+..... .+ ++...++|+.|+..+.+.+. +.+...++++|
T Consensus 69 ----~~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~s 144 (274)
T d1xhla_ 69 ----SGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSS 144 (274)
T ss_dssp ----HHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred ----HHHHHHHHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchh
Confidence 4444432 4789999999853211 12 44567789999998887664 23445677777
Q ss_pred cccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHH
Q psy4557 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNL 532 (958)
Q Consensus 457 T~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~ 532 (958)
|.+..... .....|+.||..-+.+.+.. ..+|+.+..+-||.|--+.....+.......
T Consensus 145 s~~~~~~~-----------------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~ 207 (274)
T d1xhla_ 145 IVAGPQAH-----------------SGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASD 207 (274)
T ss_dssp GGGSSSCC-----------------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHH
T ss_pred hhhccccC-----------------CCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhH
Confidence 65432110 11236999999999888652 3569999999999985432111111111111
Q ss_pred HHHHHHHH-hCCcCCCCCcCCcccHHHHHHHHHHHhcC---cCCCCceEEecCC
Q psy4557 533 YILKAITR-LGYAPDIDWYLEFTPVDFLTKSLVQLTTN---VNNANKIYNFINT 582 (958)
Q Consensus 533 ~l~~~~~~-~g~~P~~~~~~~~~pVD~va~aiv~l~~~---~~~~~~v~h~~n~ 582 (958)
.+...... ....|-. -+.-.+.+|++++.|+.. ..-.|++.++...
T Consensus 208 ~~~~~~~~~~~~iPlg----R~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG 257 (274)
T d1xhla_ 208 KLYSFIGSRKECIPVG----HCGKPEEIANIIVFLADRNLSSYIIGQSIVADGG 257 (274)
T ss_dssp HHHHHHHHCTTTCTTS----SCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred HHHHHHHHHHcCCCCC----CCcCHHHHHHHHHHHcCCccccCccCcEEEeCcC
Confidence 11111111 1123311 133467899999988742 1246778887654
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=98.80 E-value=2.3e-08 Score=103.61 Aligned_cols=216 Identities=13% Similarity=0.110 Sum_probs=132.7
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|.+|||||++-||..+.+.|++++ ++|+...|...+. ....... ...++..+.+|++.
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~~-----~~~~~~~---------~g~~~~~~~~Dvs~---- 63 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAPE-----AEAAIRN---------LGRRVLTVKCDVSQ---- 63 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCHH-----HHHHHHH---------TTCCEEEEECCTTC----
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchHH-----HHHHHHH---------cCCcEEEEEeeCCC----
Confidence 467899999999999999999998765 6777667754321 1122222 24678899999874
Q ss_pred CCcHHHHHHH-------hcccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecc
Q psy4557 397 LKNQDEYVSL-------SYEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTD 458 (958)
Q Consensus 397 L~~~~~~~~l-------~~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~ 458 (958)
.++.+.+ ...+|++||||+..... ..++...++|+.|+..+.+.+. +.+..+++++||.
T Consensus 64 ---~~~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~ 140 (247)
T d2ew8a1 64 ---PGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTST 140 (247)
T ss_dssp ---HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred ---HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccc
Confidence 3444444 24799999999975321 1234567789999999887653 2334689999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+...+. .....|+.||..-+.+.+.. ..+|+.+..+-||.|-.+........ ..
T Consensus 141 ~~~~~~-----------------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~-----~~ 198 (247)
T d2ew8a1 141 TYWLKI-----------------EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALS-----AM 198 (247)
T ss_dssp GGGSCC-----------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC------------------
T ss_pred hhcccC-----------------cccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccc-----hh
Confidence 643210 11247999999999888653 35699999999998854432111110 00
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
...... ...| +. -+.-.+++|++++.|+.... -.|++.++..
T Consensus 199 ~~~~~~-~~~~-l~---r~~~pedvA~~v~fL~S~~s~~itG~~i~vDG 242 (247)
T d2ew8a1 199 FDVLPN-MLQA-IP---RLQVPLDLTGAAAFLASDDASFITGQTLAVDG 242 (247)
T ss_dssp -----C-TTSS-SC---SCCCTHHHHHHHHHHTSGGGTTCCSCEEEESS
T ss_pred HHHHHH-Hhcc-CC---CCCCHHHHHHHHHHHhCchhcCCcCCeEEECC
Confidence 000000 0001 11 12334788999998875432 3567777654
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=2.8e-08 Score=108.25 Aligned_cols=167 Identities=17% Similarity=0.214 Sum_probs=118.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEec------Ch----hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHH
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVAR------RI----DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVRE 786 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r------~~----~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~ 786 (958)
|.+|||||+|=||.+++++|+++|+.|+.++| +. +.++.+. .+. ..++.++.+|++|.+.+.+++..
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~Dl~d~~~l~~~~~~ 79 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQ-ELT--GRSVEFEEMDILDQGALQRLFKK 79 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHH-HHH--TCCCEEEECCTTCHHHHHHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHH-Hhc--CCCcEEEEeeccccccccccccc
Confidence 77899999999999999999999999999864 11 2222222 222 34678899999999998776653
Q ss_pred HHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-------
Q psy4557 787 VLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP------- 859 (958)
Q Consensus 787 ~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~------- 859 (958)
..+|+++|.|+...... +.+.-...+++|+.|+..+..++.. . +-.+++++||....-.
T Consensus 80 -----~~~~~i~h~Aa~~~~~~----~~~~p~~~~~~Nv~gt~~l~~~~~~----~-~v~~~i~~ss~~~~~~~~~~~~~ 145 (346)
T d1ek6a_ 80 -----YSFMAVIHFAGLKAVGE----SVQKPLDYYRVNLTGTIQLLEIMKA----H-GVKNLVFSSSATVYGNPQYLPLD 145 (346)
T ss_dssp -----CCEEEEEECCSCCCHHH----HHHCHHHHHHHHHHHHHHHHHHHHH----T-TCCEEEEEEEGGGGCSCSSSSBC
T ss_pred -----cccccccccccccCcHh----hHhCHHHHHHhhhcccccccchhhh----c-Ccccccccccceeeecccccccc
Confidence 46889999999764221 2223457789999999988876632 2 2358888887753211
Q ss_pred -----CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCC
Q psy4557 860 -----FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTE 902 (958)
Q Consensus 860 -----~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~ 902 (958)
......|+.+|.+.+...+.++.. ..|+...++.|+.+..+
T Consensus 146 ~~~~~~~~~~~Y~~~k~~~e~~~~~~~~~--~~~~~~~~lR~~~v~G~ 191 (346)
T d1ek6a_ 146 EAHPTGGCTNPYGKSKFFIEEMIRDLCQA--DKTWNAVLLRYFNPTGA 191 (346)
T ss_dssp TTSCCCCCSSHHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECEEECC
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHh--ccCCceEEEeecceecc
Confidence 123456999999999888877654 45778888888766554
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=98.79 E-value=7.1e-08 Score=100.49 Aligned_cols=217 Identities=13% Similarity=0.065 Sum_probs=130.8
Q ss_pred cccCceEEecccc--chHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCC
Q psy4557 317 LKYGNVLLTGVTG--YLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEM 394 (958)
Q Consensus 317 ~~~~~VllTGaTG--flGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~ 394 (958)
.++|++|||||+| =||..+.++|++++ ++|++..|..... +...+.... ..+..++..|++.
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~G-a~V~i~~~~~~~~---~~~~~~~~~----------~~~~~~~~~D~~~-- 69 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAERLR---PEAEKLAEA----------LGGALLFRADVTQ-- 69 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTT-CEEEEEESSGGGH---HHHHHHHHH----------TTCCEEEECCTTC--
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCcHHHH---HHHHHhhhc----------cCcccccccccCC--
Confidence 3678999999997 49999999999874 6776655643222 112221111 2356678899875
Q ss_pred CCCCcHHHHHHHh-------cccCEEEEcccccC-------c-ccC---hHHHHhhhHHHHHHHHHhhccC--CCccEEE
Q psy4557 395 LGLKNQDEYVSLS-------YEIDMIIHAAAFVN-------L-ILP---YNALYKSNVLATKNLIEFSFLN--KIKSFHY 454 (958)
Q Consensus 395 lGL~~~~~~~~l~-------~~vd~IiH~AA~v~-------~-~~~---~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~ 454 (958)
.++.+.+. ..+|++||||+... + ..+ +....++|+.++..+.+.+... +-.++++
T Consensus 70 -----~~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~ 144 (256)
T d1ulua_ 70 -----DEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVT 144 (256)
T ss_dssp -----HHHHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEE
T ss_pred -----HHHHHHHHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEE
Confidence 34444432 47999999998632 1 111 2335678999999988876532 1246889
Q ss_pred EecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHH
Q psy4557 455 VSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDL 530 (958)
Q Consensus 455 vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~ 530 (958)
+||....... .....|+.||..-+.+.+.. ..+|+++..+.||.|..+.........+.
T Consensus 145 isS~~~~~~~-----------------~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~ 207 (256)
T d1ulua_ 145 LTYYASEKVV-----------------PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKM 207 (256)
T ss_dssp EECGGGTSBC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHH
T ss_pred EeehHhcCCC-----------------CCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHH
Confidence 9886543210 11347999999999988753 35699999999998865543222222222
Q ss_pred HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 531 NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 531 ~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
...+.+ ..|-. -+.-.+.+|++++.|+.... -.|++..+..
T Consensus 208 ~~~~~~------~~pl~----R~~~pedvA~~v~fL~S~~s~~itG~~i~VDG 250 (256)
T d1ulua_ 208 YDRVAQ------TAPLR----RNITQEEVGNLGLFLLSPLASGITGEVVYVDA 250 (256)
T ss_dssp HHHHHH------HSTTS----SCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHHHHh------cCCCC----CCcCHHHHHHHHHHHhCchhCCccCCeEEECc
Confidence 222221 12311 13445789999998875432 2566776654
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=98.78 E-value=8.2e-08 Score=98.88 Aligned_cols=194 Identities=15% Similarity=0.124 Sum_probs=124.7
Q ss_pred ceEEeccccchHHHHHHHHhcCCCC------eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCC
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKC------TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEM 394 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~------~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~ 394 (958)
.||||||++=||..+.++|.+++.. .|+...|.. +..+.+.+.+.. ...++.++.+|++.+
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~---~~l~~~~~~~~~---------~g~~~~~~~~Dvt~~- 69 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA---ADLEKISLECRA---------EGALTDTITADISDM- 69 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH---HHHHHHHHHHHT---------TTCEEEEEECCTTSH-
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH---HHHHHHHHHHHh---------cCCcEEEEEecCCCH-
Confidence 4799999999999999999876532 355555532 222333322221 235788899998853
Q ss_pred CCCCcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEe
Q psy4557 395 LGLKNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVS 456 (958)
Q Consensus 395 lGL~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vS 456 (958)
++.+.+. ..+|++||||+...+. ..++..+++|+.|+..+.+.+. +.+..+++++|
T Consensus 70 ------~~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~is 143 (240)
T d2bd0a1 70 ------ADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFIT 143 (240)
T ss_dssp ------HHHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ------HHHHHHHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEe
Confidence 4444432 3689999999975331 1234567899999998887664 23345899999
Q ss_pred cccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHH
Q psy4557 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNL 532 (958)
Q Consensus 457 T~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~ 532 (958)
|.+.+... .....|+.||+.-+.+.+.. ..+|+.+..+-||.|--+. |..
T Consensus 144 S~~~~~~~-----------------~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~----~~~----- 197 (240)
T d2bd0a1 144 SVAATKAF-----------------RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPM----WGK----- 197 (240)
T ss_dssp CGGGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTT----TCC-----
T ss_pred chhhcCCC-----------------CCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCch----hhh-----
Confidence 87653211 11247999999999887653 3569999999999885332 211
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN 571 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~ 571 (958)
.++.... .+..-+.+|++++.++.++.
T Consensus 198 -----------~~~~~~~-~~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 198 -----------VDDEMQA-LMMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp -----------CCSTTGG-GSBCHHHHHHHHHHHHTSCT
T ss_pred -----------cCHhhHh-cCCCHHHHHHHHHHHHcCCc
Confidence 1111111 12234789999999886543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=98.76 E-value=1.3e-07 Score=97.43 Aligned_cols=213 Identities=14% Similarity=0.064 Sum_probs=134.3
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.+++++|||||++-||..++++|++++ ++|+...|.. +++.+.... +..++.++.+|++.+
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G-~~V~~~~r~~------~~~~~~~~~---------~~~~~~~~~~Dls~~--- 63 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREE------RLLAEAVAA---------LEAEAIAVVADVSDP--- 63 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH------HHHHHHHHT---------CCSSEEEEECCTTSH---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH------HHHHHHHHH---------cCCceEEEEecCCCH---
Confidence 357899999999999999999998764 7888777742 233333322 246788899999853
Q ss_pred CCcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhccC--CCccEEEEecccc
Q psy4557 397 LKNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDSI 460 (958)
Q Consensus 397 L~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~v 460 (958)
+..+.+. .++|++||||+..... .+ +.....+|+.+..++.+.+... +.+.++.+||.+.
T Consensus 64 ----~~i~~~~~~i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~ 139 (241)
T d2a4ka1 64 ----KAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG 139 (241)
T ss_dssp ----HHHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred ----HHHHHHHHHHHHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccc
Confidence 3443332 4699999999875321 12 3356778999999988776432 2234555555432
Q ss_pred cCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 461 YPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 461 ~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
.+. + ....|+.||+.-|.+.+.. ..+|+.+..+-||.+-.+...+ ...+....+.+
T Consensus 140 ~~~-----------~-------~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~--~~~~~~~~~~~ 199 (241)
T d2a4ka1 140 LGA-----------F-------GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG--LPPWAWEQEVG 199 (241)
T ss_dssp CCH-----------H-------HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT--SCHHHHHHHHH
T ss_pred ccc-----------c-------CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHh--hhHhHHHHHHh
Confidence 110 0 1135999999999998763 3468999999999884432211 11222222211
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
..|--. +.-.|++|++++.|+.... -.|.+..+...
T Consensus 200 ------~~p~~r----~~~p~dva~~v~fL~S~~s~~itG~~i~vDGG 237 (241)
T d2a4ka1 200 ------ASPLGR----AGRPEEVAQAALFLLSEESAYITGQALYVDGG 237 (241)
T ss_dssp ------TSTTCS----CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ------CCCCCC----CcCHHHHHHHHHHHhcchhCCCcCceEEeCCC
Confidence 233211 3346899999999886432 34666666543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=4.2e-08 Score=101.70 Aligned_cols=218 Identities=13% Similarity=0.081 Sum_probs=134.5
Q ss_pred ccccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 316 KLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 316 ~~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
+.++|++|||||++-||..+.+.|++++ ++|+...|.. + ++++.... ..++.++.+|++.
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~---~---~~~~~~~~----------~~~~~~~~~Dvs~--- 62 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDE---S---GGRALEQE----------LPGAVFILCDVTQ--- 62 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCH---H---HHHHHHHH----------CTTEEEEECCTTS---
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH---H---HHHHHHHh----------cCCCeEEEccCCC---
Confidence 4578899999999999999999998774 6777766642 2 22222211 1357788899875
Q ss_pred CCCcHHHHHHHh-------cccCEEEEcccccCccc-----C---hHHHHhhhHHHHHHHHHhhcc----CCCccEEEEe
Q psy4557 396 GLKNQDEYVSLS-------YEIDMIIHAAAFVNLIL-----P---YNALYKSNVLATKNLIEFSFL----NKIKSFHYVS 456 (958)
Q Consensus 396 GL~~~~~~~~l~-------~~vd~IiH~AA~v~~~~-----~---~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vS 456 (958)
.++.+.+. ..+|++||||+...... + ++...++|+.|+..+.+.+.. ++ .+++++|
T Consensus 63 ----~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~Ii~is 137 (250)
T d1ydea1 63 ----EDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINIS 137 (250)
T ss_dssp ----HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC
T ss_pred ----HHHHHHHHHHHHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC-CCCcccc
Confidence 34444442 46899999999643221 2 335577899999998886642 22 5899999
Q ss_pred cccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcCh-hHHH
Q psy4557 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNL-VDLN 531 (958)
Q Consensus 457 T~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~-~d~~ 531 (958)
|.+..-.. .....|+.||..-+.+.+.. ..+|+.+..+-||.|--+........ .+.
T Consensus 138 S~~~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~- 199 (250)
T d1ydea1 138 SLVGAIGQ-----------------AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDP- 199 (250)
T ss_dssp CHHHHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSH-
T ss_pred cccccccc-----------------cCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCH-
Confidence 87643210 11247999999999888653 35699999999998843211000000 000
Q ss_pred HHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCc-CCCCceEEecCC
Q psy4557 532 LYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNV-NNANKIYNFINT 582 (958)
Q Consensus 532 ~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~-~~~~~v~h~~n~ 582 (958)
...++.... ..|-- -+.-.+.+|++++.|+... .-.|+++++...
T Consensus 200 ~~~~~~~~~--~~pl~----R~g~p~eva~~v~fL~Sda~~itG~~i~vDGG 245 (250)
T d1ydea1 200 RASIREGML--AQPLG----RMGQPAEVGAAAVFLASEANFCTGIELLVTGG 245 (250)
T ss_dssp HHHHHHHHH--TSTTS----SCBCHHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred HHHHHHHHh--cCCCC----CCCCHHHHHHHHHHHhCccCCCcCCeEEECCC
Confidence 011111111 22311 1344577899998877431 225667776543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.75 E-value=4e-08 Score=102.47 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=111.6
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+|.+|||||++-||..+.+.|++++ ++|++..|.. +..+.+.+.+..+ ..++.++.+|++.+
T Consensus 2 gKValITGas~GIG~aia~~la~~G-a~V~i~~r~~---~~l~~~~~~l~~~---------g~~~~~~~~Dvs~~----- 63 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGE---EGLRTTLKELREA---------GVEADGRTCDVRSV----- 63 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCH---HHHHHHHHHHHHT---------TCCEEEEECCTTCH-----
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH---HHHHHHHHHHHhc---------CCcEEEEEeecCCH-----
Confidence 4567999999999999999998774 6787777742 2233333333222 35788899999853
Q ss_pred cHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhcc------CCCccEEEEecc
Q psy4557 399 NQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSFL------NKIKSFHYVSTD 458 (958)
Q Consensus 399 ~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~~------~~~k~~~~vST~ 458 (958)
++.+.+. ..+|++||||+..... .+ ++...++|+.|+..+.+.+.. .+..+++++||.
T Consensus 64 --~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~ 141 (257)
T d2rhca1 64 --PEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAST 141 (257)
T ss_dssp --HHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCG
T ss_pred --HHHHHHHHHHHHHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccc
Confidence 4444442 4689999999975431 12 345678999999999887643 223468888876
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCcee
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIG 517 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~ 517 (958)
..+... .....|+.||..-+.+.+.. ..+|+.+..+-||.|-
T Consensus 142 ~~~~~~-----------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~ 187 (257)
T d2rhca1 142 GGKQGV-----------------VHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVE 187 (257)
T ss_dssp GGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBC
T ss_pred cccccc-----------------ccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCC
Confidence 543211 11246999999999988763 2458999999999884
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.74 E-value=6.2e-08 Score=100.88 Aligned_cols=210 Identities=13% Similarity=0.100 Sum_probs=132.6
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
.+|||||++-||..+.++|++++ ++|+...|.. +..+.+.+.+.. ...++..+.+|++. .
T Consensus 3 ValITGas~GIG~aia~~la~~G-a~V~~~~r~~---~~l~~~~~~i~~---------~g~~~~~~~~Dv~~-------~ 62 (255)
T d1gega_ 3 VALVTGAGQGIGKAIALRLVKDG-FAVAIADYND---ATAKAVASEINQ---------AGGHAVAVKVDVSD-------R 62 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH---HHHHHHHHHHHH---------TTCCEEEEECCTTS-------H
T ss_pred EEEEcCCccHHHHHHHHHHHHCC-CEEEEEECCH---HHHHHHHHHHHh---------cCCcEEEEEeeCCC-------H
Confidence 46999999999999999999874 6777667742 222333333322 23578889999985 3
Q ss_pred HHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc-----cCCCccEEEEeccccc
Q psy4557 401 DEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF-----LNKIKSFHYVSTDSIY 461 (958)
Q Consensus 401 ~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~-----~~~~k~~~~vST~~v~ 461 (958)
++.+.+. ..+|++||||+..... .+ ++...++|+.|+.++.+.+. .++...++++||.+.+
T Consensus 63 ~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~ 142 (255)
T d1gega_ 63 DQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH 142 (255)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhc
Confidence 4444432 4799999999964321 12 34567789999999887653 2233568899887643
Q ss_pred CCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHH
Q psy4557 462 PSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKA 537 (958)
Q Consensus 462 ~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~ 537 (958)
... .....|+.||..-+.+.+.. ..+|+++..+-||.|-.+ .+ ..+.+.
T Consensus 143 ~~~-----------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~----~~------~~~~~~ 195 (255)
T d1gega_ 143 VGN-----------------PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTP----MW------AEIDRQ 195 (255)
T ss_dssp SCC-----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSH----HH------HHHHHH
T ss_pred ccC-----------------cccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccCh----HH------hhhhhh
Confidence 211 11246999999999888753 356999999999987432 11 111111
Q ss_pred HHH-------------hCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 538 ITR-------------LGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 538 ~~~-------------~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
... ....|- --+.-.+++|++++.|+.... -.|.+.++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~pl----~R~~~peevA~~v~fL~S~~a~~itG~~i~vDG 250 (255)
T d1gega_ 196 VSEAAGKPLGYGTAEFAKRITL----GRLSEPEDVAACVSYLASPDSDYMTGQSLLIDG 250 (255)
T ss_dssp HHHHHTCCTTHHHHHHHTTCTT----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred hHhhhcccchhHHHHHHhcCCC----CCCcCHHHHHHHHHHHhCchhCCccCcEEEecC
Confidence 111 111221 113456889999998885432 2466776654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.74 E-value=5.6e-08 Score=101.40 Aligned_cols=216 Identities=17% Similarity=0.107 Sum_probs=124.5
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++-||..+.+.|++.+ ++|+...|... ..+.+.+.+.. ...++..+.+|++.+
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~G-a~V~~~~r~~~---~l~~~~~~~~~---------~~~~~~~~~~Dv~~~--- 69 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEY---ELNECLSKWQK---------KGFQVTGSVCDASLR--- 69 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHHHH---------TTCCEEEEECCTTSH---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHH---HHHHHHHHHHh---------cCCceEEEeccCCCH---
Confidence 367899999999999999999999775 67777777422 12222222211 134788899998743
Q ss_pred CCcHHHHHHH----h----cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEec
Q psy4557 397 LKNQDEYVSL----S----YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVST 457 (958)
Q Consensus 397 L~~~~~~~~l----~----~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST 457 (958)
++.+.+ . ..+|++||||+..... ..++...++|+.|+..+.+.+. +.+..+++++||
T Consensus 70 ----~~v~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS 145 (259)
T d1xq1a_ 70 ----PEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSS 145 (259)
T ss_dssp ----HHHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-
T ss_pred ----HHHHHHHHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccc
Confidence 333322 1 3689999999975431 1244567899999999887654 234458999998
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
....-.. .....|+.||..-+.+.+.. ..+|+.+..+-||.|-.+.....++. +.. .
T Consensus 146 ~~~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~-~~~-~ 206 (259)
T d1xq1a_ 146 IAGVVSA-----------------SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDD-EFK-K 206 (259)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------
T ss_pred ccccccc-----------------cccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchH-HHH-H
Confidence 6542110 12347999999999888653 34699999999998854432211111 111 1
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEec
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFI 580 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~ 580 (958)
.+. ...|-. -+.-.+++|++++.|+.... -.|.+.++.
T Consensus 207 ~~~-----~~~pl~----R~~~pedvA~~v~fL~S~~s~~iTG~~i~vD 246 (259)
T d1xq1a_ 207 VVI-----SRKPLG----RFGEPEEVSSLVAFLCMPAASYITGQTICVD 246 (259)
T ss_dssp --------------------CCGGGGHHHHHHHTSGGGTTCCSCEEECC
T ss_pred HHH-----hCCCCC----CCcCHHHHHHHHHHHhCchhcCCcCcEEEeC
Confidence 000 011210 12234678999998875332 245565554
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=98.74 E-value=1.8e-07 Score=99.34 Aligned_cols=243 Identities=15% Similarity=0.100 Sum_probs=143.1
Q ss_pred ccccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 316 KLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 316 ~~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
+.++|++|||||||-||..++++|++++ .+|+...|.... ..+...+.... ...++.++..|++.+
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~~~--l~~~~~~l~~~---------~g~~~~~~~~D~~~~-- 87 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDV--LKATAEQISSQ---------TGNKVHAIQCDVRDP-- 87 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH--HHHHHHHHHHH---------HSSCEEEEECCTTCH--
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHH--HHHHHHHHHHh---------cCCceEEEEecccCh--
Confidence 4578999999999999999999999765 788877775322 11112222222 235778889998753
Q ss_pred CCCcHHHHHHH-------hcccCEEEEcccccCccc-------ChHHHHhhhHHHHHHHHHhhc-----cCCCccEEEEe
Q psy4557 396 GLKNQDEYVSL-------SYEIDMIIHAAAFVNLIL-------PYNALYKSNVLATKNLIEFSF-----LNKIKSFHYVS 456 (958)
Q Consensus 396 GL~~~~~~~~l-------~~~vd~IiH~AA~v~~~~-------~~~~~~~~NV~gt~~ll~~a~-----~~~~k~~~~vS 456 (958)
+..+.+ ...+|++||+|+...... .+.....+|+.+...+...+. ......++.+|
T Consensus 88 -----~~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~s 162 (294)
T d1w6ua_ 88 -----DMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSIT 162 (294)
T ss_dssp -----HHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred -----HHHHHHhhhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccc
Confidence 333322 257899999999754321 123455678777766654321 22323455555
Q ss_pred cccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHH
Q psy4557 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNL 532 (958)
Q Consensus 457 T~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~ 532 (958)
+.+..... .....|+.||..-+.+.+.. ..+|+++..+-||.|-.+............
T Consensus 163 s~~~~~~~-----------------~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~- 224 (294)
T d1w6ua_ 163 TIYAETGS-----------------GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTF- 224 (294)
T ss_dssp CTHHHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHH-
T ss_pred cchhhhcc-----------------cccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHH-
Confidence 54321100 11236999999999988753 356999999999999654422222211111
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCCCCCCHHHHHHHHHHcC-CCccccChHHH
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINTNPIHIKTLVSVLNTYG-YNIKTVPYEKW 609 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~~~~~~~~l~~~l~~~g-~~~~~v~~~eW 609 (958)
.+.. ....|-. -+.-.+.+|++++.|+.... -.|.+.++..... .+...+ .+++.++.++|
T Consensus 225 --~~~~--~~~~pl~----R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG~~--------l~~~~~~~~~~~~~~~~~ 288 (294)
T d1w6ua_ 225 --EKEM--IGRIPCG----RLGTVEELANLAAFLCSDYASWINGAVIKFDGGEE--------VLISGEFNDLRKVTKEQW 288 (294)
T ss_dssp --HHHH--HTTCTTS----SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHH--------HHHHSTTGGGGGCCHHHH
T ss_pred --HHHH--hhcCCCC----CCCCHHHHHHHHHHHhCchhcCCCCcEEEECCChh--------heeCCCCCchhhcchhhh
Confidence 1111 1223321 13345899999999886432 3577777765421 122212 34678888899
Q ss_pred HH
Q psy4557 610 FH 611 (958)
Q Consensus 610 ~~ 611 (958)
-.
T Consensus 289 ~~ 290 (294)
T d1w6ua_ 289 DT 290 (294)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=98.73 E-value=3.4e-08 Score=102.14 Aligned_cols=213 Identities=13% Similarity=0.134 Sum_probs=134.6
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
.||||||++=||..++++|++++ ++|+...+.. ....+.+.+.+..+ ..++.++.+|++. .
T Consensus 3 V~lITGas~GIG~a~a~~la~~G-a~V~i~~~~~--~~~~~~~~~~~~~~---------g~~~~~~~~Dv~~-------~ 63 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAG-CKVLVNYARS--AKAAEEVSKQIEAY---------GGQAITFGGDVSK-------E 63 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSC--HHHHHHHHHHHHHH---------TCEEEEEECCTTS-------H
T ss_pred EEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCC--HHHHHHHHHHHHHc---------CCcEEEEeCCCCC-------H
Confidence 58999999999999999999764 6665543322 22234444433332 3578889999885 3
Q ss_pred HHHHHHh-------cccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccccC
Q psy4557 401 DEYVSLS-------YEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSIYP 462 (958)
Q Consensus 401 ~~~~~l~-------~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v~~ 462 (958)
++.+.+. ..+|++||||+..... . .++...++|+.|+..+.+.+. +.+..+++++||.+.+-
T Consensus 64 ~~v~~~~~~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~ 143 (244)
T d1edoa_ 64 ADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI 143 (244)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcC
Confidence 4444442 4789999999975431 1 234567889999998877653 23446899999976531
Q ss_pred CCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHH
Q psy4557 463 STSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAI 538 (958)
Q Consensus 463 ~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~ 538 (958)
.. .....|+.||..-+.+.+.. ..+|+.+..+-||.|--+.... + ..++. +..
T Consensus 144 ~~-----------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~-~-~~~~~----~~~ 200 (244)
T d1edoa_ 144 GN-----------------IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK-L-GEDME----KKI 200 (244)
T ss_dssp CC-----------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT-T-CHHHH----HHH
T ss_pred CC-----------------CCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHH-h-hHHHH----HHH
Confidence 10 11247999999999988753 3469999999999884322111 1 11211 111
Q ss_pred HHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC---CCCceEEecC
Q psy4557 539 TRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN---NANKIYNFIN 581 (958)
Q Consensus 539 ~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~---~~~~v~h~~n 581 (958)
....|-- -+.-.+++|++++.|+.++. -.|++.++..
T Consensus 201 --~~~~pl~----R~~~p~dvA~~v~fLa~S~~a~~itG~~i~vdG 240 (244)
T d1edoa_ 201 --LGTIPLG----RTGQPENVAGLVEFLALSPAASYITGQAFTIDG 240 (244)
T ss_dssp --HTSCTTC----SCBCHHHHHHHHHHHHHCSGGGGCCSCEEEEST
T ss_pred --HhcCCCC----CCcCHHHHHHHHHHHHCCchhcCCcCCeEEeCC
Confidence 1223321 13445889999998864332 3567776654
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.73 E-value=1.3e-07 Score=97.90 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=109.8
Q ss_pred cCceEEeccccchHHHHHHHHhc--CCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLV--DTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~--~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++||||||++=||..++++|++ ..+.+|+...|..+... .+.+.... ..++.++..|++.+.-
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~---~~~~~~~~----------~~~~~~~~~Dvs~~~~- 67 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK---ELEDLAKN----------HSNIHILEIDLRNFDA- 67 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH---HHHHHHHH----------CTTEEEEECCTTCGGG-
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH---HHHHHHhc----------CCcEEEEEEEeccHHH-
Confidence 36899999999999999999985 45678988888765432 23322221 3588999999986421
Q ss_pred CCcHHHHHHH---h--cccCEEEEcccccCcc-----cC---hHHHHhhhHHHHHHHHHhhcc---------------CC
Q psy4557 397 LKNQDEYVSL---S--YEIDMIIHAAAFVNLI-----LP---YNALYKSNVLATKNLIEFSFL---------------NK 448 (958)
Q Consensus 397 L~~~~~~~~l---~--~~vd~IiH~AA~v~~~-----~~---~~~~~~~NV~gt~~ll~~a~~---------------~~ 448 (958)
+ ...++.+ . ..+|++||||+..... .+ ++..+++|+.|+..+.+.+.. .+
T Consensus 68 v--~~~~~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~ 145 (248)
T d1snya_ 68 Y--DKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVG 145 (248)
T ss_dssp H--HHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTT
T ss_pred H--HHHHhhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccc
Confidence 1 1112222 1 4689999999964332 12 335677899999888765421 12
Q ss_pred CccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCcee
Q psy4557 449 IKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIG 517 (958)
Q Consensus 449 ~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~ 517 (958)
..+++.+||.. +.... .+......|+.||+.-..+.+.. ...|+.+..+-||.|-
T Consensus 146 ~g~ii~i~S~~--g~~~~------------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~ 204 (248)
T d1snya_ 146 RAAIINMSSIL--GSIQG------------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVK 204 (248)
T ss_dssp TCEEEEECCGG--GCSTT------------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBC
T ss_pred ccccccccccc--cccCC------------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCccc
Confidence 24677777743 21100 00011236999999999887652 3569999999999884
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.71 E-value=1.3e-07 Score=104.46 Aligned_cols=171 Identities=21% Similarity=0.227 Sum_probs=119.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHH-cCCeEEEEec---------ChhhHHHHHHHhhc--------CCCcEEEEEecCCCHH
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVT-LGAKVVAVAR---------RIDRLENLKTSLQN--------APGSIIVKKLDVTIEN 778 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~-~Ga~Vi~~~r---------~~~~l~~~~~~l~~--------~~~~~~~~~~Dvs~~~ 778 (958)
-.||||||+|=||..++++|++ .|+.|+++++ ..+..+.....+.. ......++.+|++|.+
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~ 82 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED 82 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCHH
Confidence 3589999999999999999986 6899998863 12223333332221 1234678899999998
Q ss_pred HHHHHHHHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC
Q psy4557 779 DVKKVVREVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR 858 (958)
Q Consensus 779 ~v~~~~~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~ 858 (958)
.++++++ .+..+|+++|.|+...... ..+.....+++|+.++..++.++.. . +..++++++|.....
T Consensus 83 ~l~~~~~----~~~~~d~ViH~Aa~~~~~~----~~~~~~~~~~~N~~~t~~~l~~~~~----~-~~~~~~~~~s~~~~~ 149 (383)
T d1gy8a_ 83 FLNGVFT----RHGPIDAVVHMCAFLAVGE----SVRDPLKYYDNNVVGILRLLQAMLL----H-KCDKIIFSSSAAIFG 149 (383)
T ss_dssp HHHHHHH----HSCCCCEEEECCCCCCHHH----HHHCHHHHHHHHHHHHHHHHHHHHH----T-TCCEEEEEEEGGGTB
T ss_pred Hhhhhhh----ccceeehhhcccccccccc----cccccccccccccccccccchhhhc----c-CCccccccccccccc
Confidence 8776664 4567999999999864321 2233456788999999998877643 2 234666666554321
Q ss_pred ------------------CCCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCC
Q psy4557 859 ------------------PFAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTEL 903 (958)
Q Consensus 859 ------------------~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~ 903 (958)
+......|+.+|.+.+.+++.+...+ |+.+.++.|+.+.-+.
T Consensus 150 ~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---gl~~~~lR~~~vyG~~ 209 (383)
T d1gy8a_ 150 NPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY---GIKGICLRYFNACGAH 209 (383)
T ss_dssp SCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECCC
T ss_pred ccccccccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHh---CCCEEEEecceeeccC
Confidence 11235679999999999999887764 7888888888776543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.70 E-value=1.5e-07 Score=98.89 Aligned_cols=224 Identities=12% Similarity=0.113 Sum_probs=135.7
Q ss_pred ccccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 316 KLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 316 ~~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
+.++|++|||||++=||..+.+.|++++ ++|+...|... ...+.+.+.+... ..++.++.+|++.+
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~G-a~Vvi~~~~~~--~~~~~~~~~~~~~---------g~~~~~~~~D~~~~-- 80 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANST--ESAEEVVAAIKKN---------GSDAACVKANVGVV-- 80 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCH--HHHHHHHHHHHHT---------TCCEEEEECCTTCH--
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCch--HHHHHHHHHHHhh---------CCceeeEeCCCCCH--
Confidence 4578999999999999999999999874 66665555322 2233333333322 35688889998753
Q ss_pred CCCcHHHHHHH-------hcccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhccC--CCccEEEEeccc
Q psy4557 396 GLKNQDEYVSL-------SYEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDS 459 (958)
Q Consensus 396 GL~~~~~~~~l-------~~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~ 459 (958)
+....+ ...+|+++|+|+..... . .+.....+|+.|+..+.+.+... +-.+.++++|..
T Consensus 81 -----~~v~~~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~ 155 (272)
T d1g0oa_ 81 -----EDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT 155 (272)
T ss_dssp -----HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred -----HHHHHHHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccc
Confidence 333333 24789999999875332 1 23356678999999998877532 224677776643
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCC-----CCc---Ch
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEF-----KNW---NL 527 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~-----g~~---n~ 527 (958)
..... ......|+.||..-+.+++.. ..+|+++..+.||.|-.+... ... +.
T Consensus 156 ~~~~~----------------~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~ 219 (272)
T d1g0oa_ 156 GQAKA----------------VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENL 219 (272)
T ss_dssp GTCSS----------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTC
T ss_pred ccccc----------------ccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhccccc
Confidence 21100 012346999999999888652 346999999999998533210 000 00
Q ss_pred hHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 528 VDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 528 ~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
.+ ....+. ......|-. -+.-.+.+|++++.|+.... -.|.+..+..
T Consensus 220 ~~--~~~~~~-~~~~~~Plg----R~~~peevA~~v~fL~s~~s~~itG~~i~vDG 268 (272)
T d1g0oa_ 220 SN--EEVDEY-AAVQWSPLR----RVGLPIDIARVVCFLASNDGGWVTGKVIGIDG 268 (272)
T ss_dssp CH--HHHHHH-HHHHSCTTC----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ch--HHHHHH-HHHccCCCC----CCcCHHHHHHHHHHHhCchhcCccCceEeECC
Confidence 00 011111 111223321 24556889999999886433 2566666654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.70 E-value=5.2e-08 Score=101.69 Aligned_cols=219 Identities=11% Similarity=0.092 Sum_probs=132.1
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
..+|+||||||+|-||..+.++|++++ ++|+...|.. ....+++.+.+..+ ..++..+.+|++.+
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G-~~Vvi~~~~~--~~~~~~~~~~~~~~---------g~~~~~~~~D~~~~--- 68 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSS--SKAAEEVVAELKKL---------GAQGVAIQADISKP--- 68 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSC--HHHHHHHHHHHHHT---------TCCEEEEECCTTSH---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEcCCC--hHHHHHHHHHHHHc---------CCCceEecCCCCCH---
Confidence 467899999999999999999999875 5665444432 22334444444332 35788899998742
Q ss_pred CCcHHHHHHH-------hcccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhccC--CCccEEEEecc-c
Q psy4557 397 LKNQDEYVSL-------SYEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTD-S 459 (958)
Q Consensus 397 L~~~~~~~~l-------~~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~-~ 459 (958)
++.+.+ ...+|++||+|+..... ..++....+|+.|...+++.+... +-..++.++|. +
T Consensus 69 ----~~v~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~ 144 (259)
T d1ja9a_ 69 ----SEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAA 144 (259)
T ss_dssp ----HHHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred ----HHHHHHHHHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccc
Confidence 333332 24789999999975332 123456778999998888776432 12355555543 3
Q ss_pred ccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccC--------CCC-CcC
Q psy4557 460 IYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSL--------EFK-NWN 526 (958)
Q Consensus 460 v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~--------~~g-~~n 526 (958)
..... .....|+.||+.-+.+++.. ..+|+.+..+.||.|--+. ... ...
T Consensus 145 ~~~~~-----------------~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~ 207 (259)
T d1ja9a_ 145 VMTGI-----------------PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKG 207 (259)
T ss_dssp TCCSC-----------------CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTT
T ss_pred cccCC-----------------CCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhccc
Confidence 22110 11236999999999888652 3469999999999985321 000 001
Q ss_pred -hhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEec
Q psy4557 527 -LVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFI 580 (958)
Q Consensus 527 -~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~ 580 (958)
..+.+ .+.... ..|-. -+.-.+.||++++.|+.... -.|.+.++.
T Consensus 208 ~~~~~~---~~~~~~--~~pl~----R~g~p~eVa~~v~fL~S~~a~~itG~~i~vD 255 (259)
T d1ja9a_ 208 MPQEKI---DEGLAN--MNPLK----RIGYPADIGRAVSALCQEESEWINGQVIKLT 255 (259)
T ss_dssp CCHHHH---HHHHHH--TSTTS----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred CCHHHH---HHHHHh--CCCCC----CCcCHHHHHHHHHHHhCchhcCCcCceEEeC
Confidence 11111 111111 12311 23456789999998886543 246666654
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.69 E-value=1.3e-07 Score=98.15 Aligned_cols=167 Identities=13% Similarity=0.114 Sum_probs=106.0
Q ss_pred cCceEEeccccchHHHHHHHHhcCCC-CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTK-CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++||||||++=||..++++|++++. .+|+...|..+.. +.+. .....++.++..|++.+
T Consensus 3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~---~~l~------------~~~~~~~~~~~~Dvs~~---- 63 (250)
T d1yo6a1 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA---TELK------------SIKDSRVHVLPLTVTCD---- 63 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC---HHHH------------TCCCTTEEEEECCTTCH----
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH---HHHH------------HhhCCceEEEEEecCCH----
Confidence 47899999999999999999998764 4787777754321 1121 11246899999998852
Q ss_pred CcHHHHHHH----h-----cccCEEEEcccccCc-----ccC---hHHHHhhhHHHHHHHHHhhcc-------C------
Q psy4557 398 KNQDEYVSL----S-----YEIDMIIHAAAFVNL-----ILP---YNALYKSNVLATKNLIEFSFL-------N------ 447 (958)
Q Consensus 398 ~~~~~~~~l----~-----~~vd~IiH~AA~v~~-----~~~---~~~~~~~NV~gt~~ll~~a~~-------~------ 447 (958)
+..+.+ . ..+|++||||+.... ..+ ++....+|+.|+..+.+.+.. .
T Consensus 64 ---~~v~~~~~~i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~ 140 (250)
T d1yo6a1 64 ---KSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQL 140 (250)
T ss_dssp ---HHHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCC
T ss_pred ---HHHHHHHHHHHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccc
Confidence 333322 1 238999999996432 112 345678999999988776531 1
Q ss_pred --CCccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCcee
Q psy4557 448 --KIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIG 517 (958)
Q Consensus 448 --~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~ 517 (958)
....++.+|+...+-.... . .....+...|+.||+.-..+.+.. ...|+.+..+-||.|-
T Consensus 141 ~~~~~~~i~~s~~~~~~~~~~--------~--~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~ 206 (250)
T d1yo6a1 141 SVSRAAVITISSGLGSITDNT--------S--GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQ 206 (250)
T ss_dssp CTTTCEEEEECCGGGCSTTCC--------S--TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-
T ss_pred cceeccccccccccccccCCc--------c--cccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCC
Confidence 1124555555433211100 0 000112346999999999887653 3469999999999774
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=98.67 E-value=1.3e-07 Score=98.18 Aligned_cols=219 Identities=13% Similarity=0.118 Sum_probs=134.2
Q ss_pred ccccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 316 KLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 316 ~~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
+.++|++|||||++-||..+.++|++++ ++|+...|.. +++++.... ...+..++.+|++.+
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~G-a~V~~~~~~~------~~~~~~~~~---------~~~~~~~~~~Dv~~~-- 64 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINE------AAGQQLAAE---------LGERSMFVRHDVSSE-- 64 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCH------HHHHHHHHH---------HCTTEEEECCCTTCH--
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH------HHHHHHHHH---------hCCCeEEEEeecCCH--
Confidence 4578899999999999999999999775 6777666632 223332222 235778889998742
Q ss_pred CCCcHHHHHHHh-------cccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc---CCCccEEEEecc
Q psy4557 396 GLKNQDEYVSLS-------YEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL---NKIKSFHYVSTD 458 (958)
Q Consensus 396 GL~~~~~~~~l~-------~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~---~~~k~~~~vST~ 458 (958)
++.+.+. ..+|++||||+..... ..++...++|+.|+..+.+.+.. .+..+++++||.
T Consensus 65 -----~~~~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~ 139 (253)
T d1hxha_ 65 -----ADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASV 139 (253)
T ss_dssp -----HHHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCG
T ss_pred -----HHHHHHHHHHHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccch
Confidence 3344332 4789999999975321 12445678899999888776542 222579999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hh--CCCCEEEEecCceeccCCCCCcChhHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQ--MGLPVSIVRCGNIGGSLEFKNWNLVDLNL 532 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~--~glp~~I~R~g~i~G~~~~g~~n~~d~~~ 532 (958)
+..-.. .....|+.||+.-+.+.+.. .. +|+++..+-||.|-.+.....+... ..
T Consensus 140 ~~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~-~~- 200 (253)
T d1hxha_ 140 SSWLPI-----------------EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKG-VS- 200 (253)
T ss_dssp GGTSCC-----------------TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTT-CC-
T ss_pred hhhcCc-----------------cccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcch-hh-
Confidence 643210 11247999999999888652 22 3488899999988543210000000 00
Q ss_pred HHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 533 YILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 533 ~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
+.. ....+.....-.+...+++|++++.|+.... -.|++.++..
T Consensus 201 ---~~~--~~~~~~~~~~gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDG 246 (253)
T d1hxha_ 201 ---KEM--VLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADN 246 (253)
T ss_dssp ---HHH--HBCBTTTBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred ---HHH--HHhCccccccCCCCCHHHHHHHHHHHhChhhCCCcCcEEEECc
Confidence 000 0011111101124456889999998875432 3577777754
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.67 E-value=1.7e-12 Score=130.27 Aligned_cols=169 Identities=12% Similarity=0.069 Sum_probs=92.5
Q ss_pred EEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEec--------------CCCHHHHHHHH
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLD--------------VTIENDVKKVV 784 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~D--------------vs~~~~v~~~~ 784 (958)
+.|+||+|+||+++|+.|+++|++|++.+|++++++++.+++.+..........| ......+....
T Consensus 3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (212)
T d1jaya_ 3 VALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDTAR 82 (212)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeeeccchHHH
Confidence 5677888999999999999999999999999999999988886432221111111 11111111111
Q ss_pred HHHHHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCCh
Q psy4557 785 REVLAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLA 864 (958)
Q Consensus 785 ~~~~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~ 864 (958)
...... ................. ..++.+...+.+.....+. .......+++.|...........
T Consensus 83 ~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 147 (212)
T d1jaya_ 83 DLKNIL-REKIVVSPLVPVSRGAK-------------GFTYSSERSAAEIVAEVLE-SEKVVSALHTIPAARFANLDEKF 147 (212)
T ss_dssp HTHHHH-TTSEEEECCCCEECCTT-------------CCEECCSSCHHHHHHHHHT-CSCEEECCTTCCHHHHHCTTCCC
T ss_pred Hhhhhh-ccccccccccccccccc-------------cccccccchhhhhhhhhhh-hhcccccceeecHHHhcCccccc
Confidence 111111 11111111111111000 0000000011122222332 22234445555555444445555
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCC
Q psy4557 865 VYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTE 902 (958)
Q Consensus 865 ~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~ 902 (958)
.|+.++++....++..+.++...++.+++++||.+.+.
T Consensus 148 ~~~~~~a~~~~~a~~~~~~~~~~~~g~~~~~~G~l~~a 185 (212)
T d1jaya_ 148 DWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGPLSNS 185 (212)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEESGGGH
T ss_pred CccceEEeCCHHHHHHHHHHHhhCCCeEEEEeChHHHH
Confidence 67777777778888888887777888899999988763
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=98.67 E-value=1.1e-07 Score=100.04 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=110.9
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++++|||||++-||..++++|++++ ++|++..|.. +++.+....+ ..++..+.+|++.+
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~------~~l~~~~~~~---------~~~~~~~~~Dv~~~---- 63 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEG-AKVAVLDKSA------ERLAELETDH---------GDNVLGIVGDVRSL---- 63 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH------HHHHHHHHHH---------GGGEEEEECCTTCH----
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH------HHHHHHHHHc---------CCCeeEEecccccH----
Confidence 57899999999999999999998874 6888777742 2343333222 35788899998753
Q ss_pred CcHHHHHHH-------hcccCEEEEcccccCccc------------ChHHHHhhhHHHHHHHHHhhc----cCCCccEEE
Q psy4557 398 KNQDEYVSL-------SYEIDMIIHAAAFVNLIL------------PYNALYKSNVLATKNLIEFSF----LNKIKSFHY 454 (958)
Q Consensus 398 ~~~~~~~~l-------~~~vd~IiH~AA~v~~~~------------~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~ 454 (958)
+..+.+ ...+|++||||+..++.. .++...++|+.|+..+.+.+. +.+ .++++
T Consensus 64 ---~~~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~ 139 (276)
T d1bdba_ 64 ---EDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIF 139 (276)
T ss_dssp ---HHHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEE
T ss_pred ---HHHHHHHHHHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCcee
Confidence 334333 247899999999654321 145667899999988877653 223 46777
Q ss_pred EecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-h--CCCCEEEEecCceecc
Q psy4557 455 VSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-Q--MGLPVSIVRCGNIGGS 519 (958)
Q Consensus 455 vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~--~glp~~I~R~g~i~G~ 519 (958)
+||...+-.. .....|+.||..-+.+.+..+ + .++.+..+.||.|--+
T Consensus 140 i~S~~~~~~~-----------------~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~ 190 (276)
T d1bdba_ 140 TISNAGFYPN-----------------GGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSD 190 (276)
T ss_dssp ECCGGGTSTT-----------------SSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSC
T ss_pred eeechhccCC-----------------CCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecC
Confidence 7775432110 112369999999998887532 2 3589999999988543
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.67 E-value=1.9e-07 Score=97.30 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=113.6
Q ss_pred cccCceEEeccccchHHHHHHHHhc--CCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLV--DTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEM 394 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~--~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~ 394 (958)
.+++.++||||++-||..+.++|.+ ..+++|++..|..+ ..+.+.+.+... ....++.++.+|++.
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~---~l~~~~~~l~~~-------~~~~~~~~~~~Dvs~-- 71 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSES---MLRQLKEELGAQ-------QPDLKVVLAAADLGT-- 71 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHH---HHHHHHHHHHHH-------CTTSEEEEEECCTTS--
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHH---HHHHHHHHHHhh-------cCCceEEEEEccCCC--
Confidence 4678899999999999999999875 35678888887432 223333222211 113478899999885
Q ss_pred CCCCcHHHHHHHh-----------cccCEEEEcccccCcc-------c---ChHHHHhhhHHHHHHHHHhhccC----C-
Q psy4557 395 LGLKNQDEYVSLS-----------YEIDMIIHAAAFVNLI-------L---PYNALYKSNVLATKNLIEFSFLN----K- 448 (958)
Q Consensus 395 lGL~~~~~~~~l~-----------~~vd~IiH~AA~v~~~-------~---~~~~~~~~NV~gt~~ll~~a~~~----~- 448 (958)
.++.+.+. ..+|+++|+|+..... . .++....+|+.|+..+.+.+... +
T Consensus 72 -----~~~v~~l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~ 146 (259)
T d1oaaa_ 72 -----EAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPG 146 (259)
T ss_dssp -----HHHHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTT
T ss_pred -----HHHHHHHHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 34444442 1467999999864311 1 24456789999999998876432 1
Q ss_pred -CccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh--hCCCCEEEEecCceecc
Q psy4557 449 -IKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG--QMGLPVSIVRCGNIGGS 519 (958)
Q Consensus 449 -~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~--~~glp~~I~R~g~i~G~ 519 (958)
..+++++||.+.+.+. .....|+.||..-+.+.+..+ .+|+.+..+.||.|-.+
T Consensus 147 ~~g~Iv~isS~~~~~~~-----------------~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 147 LSKTVVNISSLCALQPY-----------------KGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp CEEEEEEECCGGGTSCC-----------------TTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred CcccccccccccccCCC-----------------ccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCH
Confidence 2468888886543211 123479999999999887633 35899999999988643
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=98.66 E-value=3.2e-07 Score=93.98 Aligned_cols=208 Identities=11% Similarity=0.060 Sum_probs=130.3
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
++|++|||||++-||..+.++|++++ ++|+...|.. +.+++ ...+++..|+++.
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~G-a~V~~~~r~~------~~l~~---------------~~~~~~~~Dv~~~---- 56 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEG-AEVTICARNE------ELLKR---------------SGHRYVVCDLRKD---- 56 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCH------HHHHH---------------TCSEEEECCTTTC----
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCH------HHHHh---------------cCCcEEEcchHHH----
Confidence 56899999999999999999998875 6787777742 12221 1223566788642
Q ss_pred CcHHHHHHHhcccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccccCCCCC
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSIYPSTSE 466 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v~~~~~~ 466 (958)
.+...+-..++|++||||+..... .+ ++...++|+.|+..+.+.+. +.+..+++++||.......
T Consensus 57 --~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~-- 132 (234)
T d1o5ia_ 57 --LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI-- 132 (234)
T ss_dssp --HHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--
T ss_pred --HHHHHHHhCCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccc--
Confidence 233333446899999999864321 12 33456789999888877653 2333578888886543211
Q ss_pred CCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHhC
Q psy4557 467 NFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLG 542 (958)
Q Consensus 467 ~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g 542 (958)
.....|+.||..-+.+.+.. ..+|+.+..+.||.+-.+.....+. +... +.. ..
T Consensus 133 ---------------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~--~~~~---~~~--~~ 190 (234)
T d1o5ia_ 133 ---------------ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLS--EEKK---KQV--ES 190 (234)
T ss_dssp ---------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSC--HHHH---HHH--HT
T ss_pred ---------------cccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcC--HHHH---HHH--Hh
Confidence 11236999999999887653 3569999999999885432111111 1111 111 12
Q ss_pred CcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 543 YAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 543 ~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
..|-. -+.-.+++|++++.|+.... -.|++.++..
T Consensus 191 ~~pl~----R~~~pediA~~v~fL~S~~s~~itG~~i~vDG 227 (234)
T d1o5ia_ 191 QIPMR----RMAKPEEIASVVAFLCSEKASYLTGQTIVVDG 227 (234)
T ss_dssp TSTTS----SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCCCC----CCcCHHHHHHHHHHHhChhhcCCcCcEEEECc
Confidence 23321 23457789999998875432 2577777753
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1e-07 Score=99.33 Aligned_cols=169 Identities=17% Similarity=0.184 Sum_probs=112.2
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.+++.||||||++-||..+++.|++++ .+|+...|.. ...+.+.+.+... ....++..+.+|++.+
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G-~~Vv~~~r~~---~~l~~~~~~l~~~-------~~~~~~~~~~~Dls~~--- 73 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTV---GNIEELAAECKSA-------GYPGTLIPYRCDLSNE--- 73 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH---HHHHHHHHHHHHT-------TCSSEEEEEECCTTCH---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH---HHHHHHHHHHHhc-------CCCceEEEEEccCCCH---
Confidence 467899999999999999999999875 5776666642 2233333333221 1235788999999853
Q ss_pred CCcHHHHHHH-------hcccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhc----cCC--CccEEEEe
Q psy4557 397 LKNQDEYVSL-------SYEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSF----LNK--IKSFHYVS 456 (958)
Q Consensus 397 L~~~~~~~~l-------~~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~----~~~--~k~~~~vS 456 (958)
++.+.+ ...+|++||||+..... . .++....+|+.|...+.+.+. ..+ ..+++++|
T Consensus 74 ----~~v~~~v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~is 149 (257)
T d1xg5a_ 74 ----EDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININ 149 (257)
T ss_dssp ----HHHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred ----HHHHHHHHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 434333 24689999999975431 1 234567789999887765542 222 35799999
Q ss_pred cccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH------hhCCCCEEEEecCceec
Q psy4557 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA------GQMGLPVSIVRCGNIGG 518 (958)
Q Consensus 457 T~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a------~~~glp~~I~R~g~i~G 518 (958)
|.+-+... + ......|+.||...+.+.+.. ..+|+.+..+-||.+-.
T Consensus 150 S~~~~~~~--p-------------~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t 202 (257)
T d1xg5a_ 150 SMSGHRVL--P-------------LSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVET 202 (257)
T ss_dssp CGGGTSCC--S-------------CGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCS
T ss_pred chHhcCCC--C-------------CcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCC
Confidence 87643210 0 011235999999999888642 24689999999987753
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=4.6e-08 Score=100.61 Aligned_cols=202 Identities=17% Similarity=0.180 Sum_probs=122.8
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+|+||||||+|-||..+.+.|+++ +++|+++.|..... ......+..|.+...---.
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~-G~~V~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 58 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRAR-NWWVASIDVVENEE----------------------ASASVIVKMTDSFTEQADQ 58 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSCCTT----------------------SSEEEECCCCSCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCcccc----------------------ccccceeecccCcHHHHHH
Confidence 579999999999999999999875 56887776644321 0112222233221100000
Q ss_pred cHHHHHHHh--cccCEEEEcccccCc---c--cC---hHHHHhhhHHHHHHHHHhhccC--CCccEEEEecccccCCCCC
Q psy4557 399 NQDEYVSLS--YEIDMIIHAAAFVNL---I--LP---YNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDSIYPSTSE 466 (958)
Q Consensus 399 ~~~~~~~l~--~~vd~IiH~AA~v~~---~--~~---~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~v~~~~~~ 466 (958)
-........ .++|++||||+.... . .+ ++..+++|+.|+.++.+++... +-.+++++||.+.....
T Consensus 59 ~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~-- 136 (236)
T d1dhra_ 59 VTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT-- 136 (236)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC--
T ss_pred HHHHHHHHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCc--
Confidence 000111111 258999999984321 1 11 2345678999999888776531 22579999987643211
Q ss_pred CCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh------hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHH
Q psy4557 467 NFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG------QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITR 540 (958)
Q Consensus 467 ~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~------~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~ 540 (958)
.....|+.||..-+.+.+..+ ..|+.+..+.||.|.-+. . +.
T Consensus 137 ---------------~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~----------~----~~--- 184 (236)
T d1dhra_ 137 ---------------PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM----------N----RK--- 184 (236)
T ss_dssp ---------------TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH----------H----HH---
T ss_pred ---------------cCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCc----------c----hh---
Confidence 112479999999999998643 247999999999885321 1 11
Q ss_pred hCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEec
Q psy4557 541 LGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFI 580 (958)
Q Consensus 541 ~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~ 580 (958)
..|+.+ .-.|+|.+.+|+.+..++.... ..|....+.
T Consensus 185 --~~~~~~-~~~~~~pe~va~~~~~l~s~~~~~i~G~~i~v~ 223 (236)
T d1dhra_ 185 --SMPEAD-FSSWTPLEFLVETFHDWITGNKRPNSGSLIQVV 223 (236)
T ss_dssp --HSTTSC-GGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEE
T ss_pred --hCccch-hhcCCCHHHHHHHHHHHhCCCccCCCCCeEEEE
Confidence 123322 2357899999999999875432 245555554
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.65 E-value=3.2e-07 Score=95.17 Aligned_cols=216 Identities=11% Similarity=0.107 Sum_probs=129.5
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
++|||||++-||..+.++|++++ ++|++..|..... +.+......+ ...|++.+. +.
T Consensus 2 TAlVTGas~GiG~aiA~~la~~G-a~V~i~~r~~~~~---~~~~~~~~~~---------------~~~dv~~~~----~~ 58 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAG-HTVACHDESFKQK---DELEAFAETY---------------PQLKPMSEQ----EP 58 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSH---HHHHHHHHHC---------------TTSEECCCC----SH
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHH---HHHHhhhCcE---------------EEeccCCHH----HH
Confidence 57999999999999999998775 6888777753322 2332221111 123444321 11
Q ss_pred -HHHHHH---hcccCEEEEcccccCccc-----C---hHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccccCCC
Q psy4557 401 -DEYVSL---SYEIDMIIHAAAFVNLIL-----P---YNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSIYPST 464 (958)
Q Consensus 401 -~~~~~l---~~~vd~IiH~AA~v~~~~-----~---~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v~~~~ 464 (958)
..++.. ...+|++||||+...... + ++...++|+.|+..+.+.+. +.+..+++++||.+.+...
T Consensus 59 ~~~~~~~~~~~G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~ 138 (252)
T d1zmta1 59 AELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW 138 (252)
T ss_dssp HHHHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC
T ss_pred HHHHHHHHHHcCCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccccc
Confidence 112222 257999999998643222 2 33456789999988887653 2334589999987653211
Q ss_pred CCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHH--HHHHHHHH
Q psy4557 465 SENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDL--NLYILKAI 538 (958)
Q Consensus 465 ~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~--~~~l~~~~ 538 (958)
.....|+.||..-+.+.+.. ..+|+++..+.||.|-.+.....+..... .....+..
T Consensus 139 -----------------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~ 201 (252)
T d1zmta1 139 -----------------KELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHV 201 (252)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHH
T ss_pred -----------------ccccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHH
Confidence 11236999999999888753 35699999999999976543333221100 01111111
Q ss_pred HHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 539 TRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 539 ~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
.+ ..|-. -+.-.+++|++++.|+.... -.|++.++...
T Consensus 202 ~~--~~pl~----R~g~pedvA~~v~fL~S~~s~~iTG~~i~vdGG 241 (252)
T d1zmta1 202 KK--VTALQ----RLGTQKELGELVAFLASGSCDYLTGQVFWLAGG 241 (252)
T ss_dssp HH--HSSSS----SCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTT
T ss_pred Hh--cCCCC----CCcCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 11 12311 13456789999999885432 25677777643
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=98.64 E-value=1.2e-07 Score=98.99 Aligned_cols=224 Identities=15% Similarity=0.110 Sum_probs=135.5
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++-||..+.+.|++++ ++|+...|..... .+...+....+ ..++..+.+|++.+
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~--~~~~~~~~~~~---------g~~~~~~~~Dv~~~--- 71 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADA--VEVTEKVGKEF---------GVKTKAYQCDVSNT--- 71 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTH--HHHHHHHHHHH---------TCCEEEEECCTTCH---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHH--HHHHHHHHHHh---------CCceEEEEccCCCH---
Confidence 367899999999999999999999864 6888777765432 11122222222 35788899998853
Q ss_pred CCcHHHHHHHh-------cccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhc-----cCCCccEEEEec
Q psy4557 397 LKNQDEYVSLS-------YEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSF-----LNKIKSFHYVST 457 (958)
Q Consensus 397 L~~~~~~~~l~-------~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~-----~~~~k~~~~vST 457 (958)
++.+.+. ..+|++||||+..... .+ ++....+|+.|+..+.+.+. +.....++.+|+
T Consensus 72 ----~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s 147 (260)
T d1h5qa_ 72 ----DIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS 147 (260)
T ss_dssp ----HHHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred ----HHHHHHHHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeec
Confidence 4444442 3789999999864321 12 34567789999988876543 233345566665
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
............ . ......|+.||..-+.+.+.. ..+|+.+..+-||.|-.+... ....++.
T Consensus 148 ~~~~~~~~~~~~------~----~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~--~~~~~~~-- 213 (260)
T d1h5qa_ 148 MSSQIINQSSLN------G----SLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTA--HMDKKIR-- 213 (260)
T ss_dssp GGGTSCCEEETT------E----ECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGG--GSCHHHH--
T ss_pred cccccccccccc------c----CccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchh--ccCHHHH--
Confidence 544322110000 0 012346999999999888653 356999999999988543211 1111221
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
+.... ..|-. -+.-.+++|++++.|+.... -.|++.++..
T Consensus 214 --~~~~~--~~pl~----R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG 255 (260)
T d1h5qa_ 214 --DHQAS--NIPLN----RFAQPEEMTGQAILLLSDHATYMTGGEYFIDG 255 (260)
T ss_dssp --HHHHH--TCTTS----SCBCGGGGHHHHHHHHSGGGTTCCSCEEEECT
T ss_pred --HHHHh--cCCCC----CCcCHHHHHHHHHHHhcchhCCCcCceEEECC
Confidence 11111 23311 12345668888888875432 3567777654
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.63 E-value=1.1e-07 Score=102.53 Aligned_cols=206 Identities=15% Similarity=0.146 Sum_probs=136.6
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEE------EecC--hhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVA------VARR--IDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~------~~r~--~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.++||||+|=||..+++.|+++|+.|.. .++. ......+. .+ .....+.++..|.++......
T Consensus 2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~~d~~~~~~~~~------- 72 (322)
T d1r6da_ 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLA-PV-DADPRLRFVHGDIRDAGLLAR------- 72 (322)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGG-GG-TTCTTEEEEECCTTCHHHHHH-------
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhh-hh-hcCCCeEEEEeccccchhhhc-------
Confidence 4899999999999999999999986543 3221 11111111 11 233568889999998875542
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC----------
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP---------- 859 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~---------- 859 (958)
.....|.+||.|+...... ........+++|+.|+..+++++.. . +..++|++||.+..-.
T Consensus 73 ~~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~N~~gt~~ll~~~~~----~-~~~~~I~~Ss~~~yg~~~~~~~~E~~ 143 (322)
T d1r6da_ 73 ELRGVDAIVHFAAESHVDR----SIAGASVFTETNVQGTQTLLQCAVD----A-GVGRVVHVSTNQVYGSIDSGSWTESS 143 (322)
T ss_dssp HTTTCCEEEECCSCCCHHH----HHHCCHHHHHHHTHHHHHHHHHHHH----T-TCCEEEEEEEGGGGCCCSSSCBCTTS
T ss_pred cccccceEEeecccccccc----cccchHHHhhhhHHHHHHHHHHHHH----c-CCceEEEeecceeecCCCCCCCCCCC
Confidence 2457899999998754322 2233456788999999998887743 2 2358999999875322
Q ss_pred -CCCChhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCC-hhhhhh------hccccC----CCCCCH
Q psy4557 860 -FAGLAVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTD-RDVVDK------YDISKA----VPVLTT 927 (958)
Q Consensus 860 -~~~~~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~-~~~~~~------~~~~~~----~~~~~p 927 (958)
......|+.||.+.+.+.+.++++. |+++.++.|+.|.-|....... ...+.. ...... ...+..
T Consensus 144 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v 220 (322)
T d1r6da_ 144 PLEPNSPYAASKAGSDLVARAYHRTY---GLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHT 220 (322)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEecCCCeEEccEEH
Confidence 1234679999999999999998775 7899999999887653221100 000110 001001 124678
Q ss_pred HHHHHHHHHHhcCCCCc
Q psy4557 928 KEISQSIIFALLQPSHS 944 (958)
Q Consensus 928 ~~ia~~i~~~l~~~~~~ 944 (958)
+|+|++++.++.++...
T Consensus 221 ~D~a~ai~~~~~~~~~~ 237 (322)
T d1r6da_ 221 DDHCRGIALVLAGGRAG 237 (322)
T ss_dssp HHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 99999999988776543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=7.3e-08 Score=102.55 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=136.8
Q ss_pred ccccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 316 KLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 316 ~~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
..+++.+|||||++-||..+++.|++++ ++|++..|..+. .+...+.+.... ......++..+.+|++.+
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~G-a~Vvi~~r~~~~---l~~~~~el~~~~----~~~~~~~~~~~~~Dvs~~-- 78 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLER---LKSAADELQANL----PPTKQARVIPIQCNIRNE-- 78 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH---HHHHHHHHHHTS----CTTCCCCEEEEECCTTCH--
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH---HHHHHHHHHhhh----ccccCceEEEEeccCCCH--
Confidence 4578999999999999999999999875 688877775321 111111111110 012246889999999853
Q ss_pred CCCcHHHHHHH-------hcccCEEEEcccccCcc-------cChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEec
Q psy4557 396 GLKNQDEYVSL-------SYEIDMIIHAAAFVNLI-------LPYNALYKSNVLATKNLIEFSFL----NKIKSFHYVST 457 (958)
Q Consensus 396 GL~~~~~~~~l-------~~~vd~IiH~AA~v~~~-------~~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST 457 (958)
++.+.+ ...+|++||||+..... ..++...++|+.|+..+.+.+.. .+...++.+|+
T Consensus 79 -----~~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss 153 (297)
T d1yxma1 79 -----EEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIV 153 (297)
T ss_dssp -----HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECC
T ss_pred -----HHHHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccc
Confidence 444433 24789999999864321 12345678899999998877643 22345777765
Q ss_pred ccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHH
Q psy4557 458 DSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLY 533 (958)
Q Consensus 458 ~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~ 533 (958)
.+..+. .....|+.||..-+.+.+.. ..+|+.+..+.||.|..+.....+... ...
T Consensus 154 ~~~~~~------------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~--~~~ 213 (297)
T d1yxma1 154 PTKAGF------------------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSW--GQS 213 (297)
T ss_dssp CCTTCC------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGG--GGG
T ss_pred cccccc------------------cccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhcccc--CHH
Confidence 432110 11247999999999988763 246999999999998654321111110 000
Q ss_pred HHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 534 ILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 534 l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
..+... ...|-. -+.-.+++|++++.|+.... -.|++.++...
T Consensus 214 ~~~~~~--~~~plg----R~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG 258 (297)
T d1yxma1 214 FFEGSF--QKIPAK----RIGVPEEVSSVVCFLLSPAASFITGQSVDVDGG 258 (297)
T ss_dssp GGTTGG--GGSTTS----SCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHH--hcCCCC----CCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcC
Confidence 001000 111211 12335789999999885432 35677777643
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.2e-07 Score=99.93 Aligned_cols=180 Identities=14% Similarity=0.053 Sum_probs=110.6
Q ss_pred cCce-EEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNV-LLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~V-llTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++| |||||++=||..+.++|++..+.+|++..|..+. .+...+.+... ..++.++..|++.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~---~~~~~~~l~~~---------~~~~~~~~~Dvs~----- 64 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR---GQAAVQQLQAE---------GLSPRFHQLDIDD----- 64 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH---HHHHHHHHHHT---------TCCCEEEECCTTC-----
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH---HHHHHHHHHhc---------CCcEEEEEEecCC-----
Confidence 3566 9999999999999999998767788888885322 22222222221 3467888999874
Q ss_pred CcHHHHHHH-------hcccCEEEEcccccCccc-------ChHHHHhhhHHHHHHHHHhhccC--CCccEEEEeccccc
Q psy4557 398 KNQDEYVSL-------SYEIDMIIHAAAFVNLIL-------PYNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDSIY 461 (958)
Q Consensus 398 ~~~~~~~~l-------~~~vd~IiH~AA~v~~~~-------~~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~v~ 461 (958)
.++.+.+ ...+|++||||+...... .++..+.+|+.|+..+.+.+... +..+++.+||.+..
T Consensus 65 --~~sv~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~ 142 (275)
T d1wmaa1 65 --LQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSV 142 (275)
T ss_dssp --HHHHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH
T ss_pred --HHHHHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccee
Confidence 2333333 247999999999753221 23346779999999998876532 12479999986432
Q ss_pred CC---CC---------CCCccc------------ccccCcCCCCCCCCChhHHHHHHHHHHHHH-----h---hCCCCEE
Q psy4557 462 PS---TS---------ENFQED------------YTVADFDDFMTTTSGYGQSKIVSEYLVLNA-----G---QMGLPVS 509 (958)
Q Consensus 462 ~~---~~---------~~~~e~------------~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a-----~---~~glp~~ 509 (958)
.. .. ....+. ...........+...|+.||.....+.+.. . ..|+.+.
T Consensus 143 ~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn 222 (275)
T d1wmaa1 143 RALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLN 222 (275)
T ss_dssp HHHHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEE
T ss_pred ccccccchhhhhhhcccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 10 00 000000 000000111123457999999988765431 1 2389999
Q ss_pred EEecCcee
Q psy4557 510 IVRCGNIG 517 (958)
Q Consensus 510 I~R~g~i~ 517 (958)
.+-||.|-
T Consensus 223 ~v~PG~v~ 230 (275)
T d1wmaa1 223 ACCPGWVR 230 (275)
T ss_dssp EEECCSBC
T ss_pred EEeccccc
Confidence 99999874
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.58 E-value=8.3e-08 Score=96.74 Aligned_cols=189 Identities=14% Similarity=0.079 Sum_probs=117.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.|.++||||||-||+.++++|.++|. +|+...|+.. ....++ ..+..+..++. ....+.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~----------~~~~~~---~~~~~d~~~~~------~~~~~~ 62 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL----------AEHPRL---DNPVGPLAELL------PQLDGS 62 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC----------CCCTTE---ECCBSCHHHHG------GGCCSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCch----------hhcccc---cccccchhhhh------hccccc
Confidence 48999999999999999999999997 5666666531 111223 23444443321 123457
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHHHHH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTKYFI 873 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asKaa~ 873 (958)
+|.+|+++|...... .+ -+...++|+.++..+++.+-. .+-.+++++||..+... ....|..+|+..
T Consensus 63 ~d~vi~~~g~~~~~~---~~---~~~~~~~~~~~~~~~~~~a~~-----~~v~~~i~~Ss~~~~~~--~~~~y~~~K~~~ 129 (212)
T d2a35a1 63 IDTAFCCLGTTIKEA---GS---EEAFRAVDFDLPLAVGKRALE-----MGARHYLVVSALGADAK--SSIFYNRVKGEL 129 (212)
T ss_dssp CSEEEECCCCCHHHH---SS---HHHHHHHHTHHHHHHHHHHHH-----TTCCEEEEECCTTCCTT--CSSHHHHHHHHH
T ss_pred hheeeeeeeeecccc---cc---ccccccchhhhhhhccccccc-----ccccccccccccccccc--cccchhHHHHHH
Confidence 899999998753211 11 246778899998888876532 33468999999876432 345699999876
Q ss_pred HHHHHHHHHHhCCCCc-EEEEEECCcccCCCCCCCCChhhhhhhc--cccCCCCCCHHHHHHHHHHHhcCCCC
Q psy4557 874 EGISGALRQEVSDRNI-KVTCIQAGDVKTELLSHSTDRDVVDKYD--ISKAVPVLTTKEISQSIIFALLQPSH 943 (958)
Q Consensus 874 ~~l~~~la~el~~~gI-rv~~v~PG~v~T~~~~~~~~~~~~~~~~--~~~~~~~~~p~~ia~~i~~~l~~~~~ 943 (958)
+...+ ..+. +.+.+.||.|.-+............... .....+.+..+|+|++++.++.++..
T Consensus 130 E~~l~-------~~~~~~~~I~Rp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~DvA~ai~~~~~~~~~ 195 (212)
T d2a35a1 130 EQALQ-------EQGWPQLTIARPSLLFGPREEFRLAEILAAPIARILPGKYHGIEACDLARALWRLALEEGK 195 (212)
T ss_dssp HHHHT-------TSCCSEEEEEECCSEESTTSCEEGGGGTTCCCC----CHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred hhhcc-------ccccccceeeCCcceeCCcccccHHHHHHHHHhhccCCCCcEEEHHHHHHHHHHHHcCCCC
Confidence 65432 3344 6788899998755321100000000000 00001125678999999998877654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.6e-07 Score=96.90 Aligned_cols=221 Identities=12% Similarity=0.068 Sum_probs=132.6
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.++|++|||||++-||..+.+.|++++ ++|+...|.. +++++.. + ...+.....|+....
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G-~~Vi~~~r~~------~~l~~~~----------~-~~~~~~~~~d~~~~~-- 63 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREG-AKVIATDINE------SKLQELE----------K-YPGIQTRVLDVTKKK-- 63 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH------HHHGGGG----------G-STTEEEEECCTTCHH--
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCH------HHHHHHH----------h-ccCCceeeeeccccc--
Confidence 467899999999999999999999875 6777777742 2232211 0 124556666765321
Q ss_pred CCcHHHHHHHhcccCEEEEcccccCccc-------ChHHHHhhhHHHHHHHHHhhcc----CCCccEEEEecccccCCCC
Q psy4557 397 LKNQDEYVSLSYEIDMIIHAAAFVNLIL-------PYNALYKSNVLATKNLIEFSFL----NKIKSFHYVSTDSIYPSTS 465 (958)
Q Consensus 397 L~~~~~~~~l~~~vd~IiH~AA~v~~~~-------~~~~~~~~NV~gt~~ll~~a~~----~~~k~~~~vST~~v~~~~~ 465 (958)
..+........+|.+||+|+...... .++....+|+.|+..+.+.+.. .+..+++++||.... .
T Consensus 64 --~~~~~~~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~--~- 138 (245)
T d2ag5a1 64 --QIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASS--V- 138 (245)
T ss_dssp --HHHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT--T-
T ss_pred --cccccccccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhc--c-
Confidence 11222333468999999999765421 2345677899999998876542 233578888875320 0
Q ss_pred CCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh
Q psy4557 466 ENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL 541 (958)
Q Consensus 466 ~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~ 541 (958)
. +......|+.||..-+.+++.. ..+|+.+..+.||.|-.+................+....
T Consensus 139 ~-------------~~~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~- 204 (245)
T d2ag5a1 139 K-------------GVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLK- 204 (245)
T ss_dssp B-------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHH-
T ss_pred C-------------CccchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHh-
Confidence 0 0012347999999999988763 346999999999988654211000000000111111111
Q ss_pred CCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 542 GYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 542 g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
..|-. -+.-.+++|+++..|+.... -.|.+.++..
T Consensus 205 -~~pl~----R~~~pedva~~v~fL~s~~s~~iTG~~i~VDG 241 (245)
T d2ag5a1 205 -RQKTG----RFATAEEIAMLCVYLASDESAYVTGNPVIIDG 241 (245)
T ss_dssp -TCTTS----SCEEHHHHHHHHHHHHSGGGTTCCSCEEEECT
T ss_pred -cCCCC----CCcCHHHHHHHHHHHhChhhCCCcCceEEeCC
Confidence 12311 13345888999999886432 3567777653
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.53 E-value=1e-07 Score=97.89 Aligned_cols=200 Identities=17% Similarity=0.214 Sum_probs=121.6
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
++||||||+|-||..+.++|+++ +++|+++.|..... ......+.+|.....---..
T Consensus 3 gkVlITGas~GIG~aia~~l~~~-G~~V~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~ 59 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKN-GYTVLNIDLSANDQ----------------------ADSNILVDGNKNWTEQEQSI 59 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCCTT----------------------SSEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCchhc----------------------ccccceeccccCchhHHHHH
Confidence 47999999999999999999976 57899888865421 11223344444321100000
Q ss_pred HHHHHHH--hcccCEEEEcccccCcc----c----ChHHHHhhhHHHHHHHHHhhccC--CCccEEEEecccccCCCCCC
Q psy4557 400 QDEYVSL--SYEIDMIIHAAAFVNLI----L----PYNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTDSIYPSTSEN 467 (958)
Q Consensus 400 ~~~~~~l--~~~vd~IiH~AA~v~~~----~----~~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~~v~~~~~~~ 467 (958)
.+..... ..++|++||||+..... . .++..+.+|+.|+..+.+.+... +-.+++++||.+.+.+.
T Consensus 60 ~~~~~~~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~--- 136 (235)
T d1ooea_ 60 LEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPT--- 136 (235)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC---
T ss_pred HHHHHHHhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCc---
Confidence 0011111 14689999999853221 1 13345788999998888776432 12479999987643211
Q ss_pred CcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh-h-----CCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHHh
Q psy4557 468 FQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG-Q-----MGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITRL 541 (958)
Q Consensus 468 ~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~-~-----~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~ 541 (958)
.....|+.||+.-+.+.+..+ + .|+.+..+.||.+--+ +. +
T Consensus 137 --------------~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~----------~~----~----- 183 (235)
T d1ooea_ 137 --------------PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP----------MN----R----- 183 (235)
T ss_dssp --------------TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH----------HH----H-----
T ss_pred --------------ccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc----------ch----h-----
Confidence 112479999999999987642 2 3566777888876321 11 1
Q ss_pred CCcCCCCCcCCcccHHHHHHHHHHHhcCcC---CCCceEEe
Q psy4557 542 GYAPDIDWYLEFTPVDFLTKSLVQLTTNVN---NANKIYNF 579 (958)
Q Consensus 542 g~~P~~~~~~~~~pVD~va~aiv~l~~~~~---~~~~v~h~ 579 (958)
...|+.+ .-.|+|.+.+++.++.+..+.. ..|....+
T Consensus 184 ~~~~~~~-~~~~~~~~~va~~~~~~l~~~~~~~~tG~~i~v 223 (235)
T d1ooea_ 184 KWMPNAD-HSSWTPLSFISEHLLKWTTETSSRPSSGALLKI 223 (235)
T ss_dssp HHSTTCC-GGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEE
T ss_pred hhCcCCc-cccCCCHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 1234332 2457899999999986654432 24555555
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.4e-07 Score=97.13 Aligned_cols=203 Identities=13% Similarity=0.083 Sum_probs=123.2
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.+++++|||||++-||..+.++|++++ .+|++..|..+ ..+.+.+.... ....++..+..|++...--
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G-~~Vil~~r~~~---~l~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~ 79 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTARSKE---TLQKVVSHCLE--------LGAASAHYIAGTMEDMTFA 79 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHH---HHHHHHHHHHH--------HTCSEEEEEECCTTCHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHH---HHHHHHHHHhh--------hhcccchhhhhhhhhHHHH
Confidence 478899999999999999999999875 78888888532 22222221111 1234666777787642110
Q ss_pred CCcHHHHHHHhcccCEEEEcccccCcc----cC---hHHHHhhhHHHHHHHHHhhcc---CCCccEEEEecccccCCCCC
Q psy4557 397 LKNQDEYVSLSYEIDMIIHAAAFVNLI----LP---YNALYKSNVLATKNLIEFSFL---NKIKSFHYVSTDSIYPSTSE 466 (958)
Q Consensus 397 L~~~~~~~~l~~~vd~IiH~AA~v~~~----~~---~~~~~~~NV~gt~~ll~~a~~---~~~k~~~~vST~~v~~~~~~ 466 (958)
-...+........+|+++++|+..... .+ +.....+|+.|+..+.+.+.. .+-.+++++||.+.+-..
T Consensus 80 ~~~~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~~~-- 157 (269)
T d1xu9a_ 80 EQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAY-- 157 (269)
T ss_dssp HHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCC--
T ss_pred HHHHHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcCCC--
Confidence 000011122235789999999864321 22 334567899998888766532 112478889887643210
Q ss_pred CCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh------hCCCCEEEEecCceeccCCCCCcChhHHHHHHHHHHHH
Q psy4557 467 NFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG------QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILKAITR 540 (958)
Q Consensus 467 ~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~------~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~ 540 (958)
.....|+.||+.-+.+.+..+ ..|+.+..+.||.|-- ++....
T Consensus 158 ---------------p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T----------~~~~~~------ 206 (269)
T d1xu9a_ 158 ---------------PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDT----------ETAMKA------ 206 (269)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCC----------HHHHHH------
T ss_pred ---------------CCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCC----------cHHHHh------
Confidence 123489999999998876532 2367788899987732 211111
Q ss_pred hCCcCCCCCcCCcccHHHHHHHHHHHhc
Q psy4557 541 LGYAPDIDWYLEFTPVDFLTKSLVQLTT 568 (958)
Q Consensus 541 ~g~~P~~~~~~~~~pVD~va~aiv~l~~ 568 (958)
.+.. ......+.|.+|+.|+....
T Consensus 207 ---~~~~-~~~~~~~~e~~a~~i~~~~~ 230 (269)
T d1xu9a_ 207 ---VSGI-VHMQAAPKEECALEIIKGGA 230 (269)
T ss_dssp ---SCGG-GGGGCBCHHHHHHHHHHHHH
T ss_pred ---ccCC-ccccCCCHHHHHHHHHHHhh
Confidence 1111 12234678889998887554
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=1.2e-06 Score=90.84 Aligned_cols=220 Identities=12% Similarity=0.073 Sum_probs=130.1
Q ss_pred ccCceEEecccc--chHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 318 KYGNVLLTGVTG--YLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 318 ~~~~VllTGaTG--flGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
++|+||||||+| =||..+.+.|++++ ++|+...|... ..+++.+.... ..+...+..|++...-
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G-~~V~i~~~~~~---~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 69 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDK---LKGRVEEFAAQ----------LGSDIVLQCDVAEDAS 69 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSTT---THHHHHHHHHH----------TTCCCEEECCTTCHHH
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcC-CEEEEEeCCHH---HHHHHHHHHhh----------cCCcceeecccchHHH
Confidence 578999999998 58899999998764 67776677533 22333333222 1344555666553210
Q ss_pred CCCcHHHHHHH---hcccCEEEEcccccCcccC------------hHHHHhhhHHHHHHHHHhhccC--CCccEEEEecc
Q psy4557 396 GLKNQDEYVSL---SYEIDMIIHAAAFVNLILP------------YNALYKSNVLATKNLIEFSFLN--KIKSFHYVSTD 458 (958)
Q Consensus 396 GL~~~~~~~~l---~~~vd~IiH~AA~v~~~~~------------~~~~~~~NV~gt~~ll~~a~~~--~~k~~~~vST~ 458 (958)
....+... ...+|+++|+|+....... +......|+.+...+.+.+... +-..++++||.
T Consensus 70 ---~~~~~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~ 146 (258)
T d1qsga_ 70 ---IDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYL 146 (258)
T ss_dssp ---HHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECG
T ss_pred ---HHHHHHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecch
Confidence 01112222 2467999999987543221 1123446777777777665432 22457888886
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHHh----hCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNAG----QMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a~----~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
+...+. .....|+.||..-+.+++..+ .+|+.+..++||.|..+...+.++.......+
T Consensus 147 ~~~~~~-----------------~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~ 209 (258)
T d1qsga_ 147 GAERAI-----------------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHC 209 (258)
T ss_dssp GGTSBC-----------------TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHH
T ss_pred hhccCC-----------------CCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHH
Confidence 532110 112469999999999987632 46899999999999765543333332222221
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
. ...|-. -+.-.|.+|++++.|+.... -.|.+.++..
T Consensus 210 ----~--~~~pl~----R~~~peeia~~v~fL~s~~s~~itG~~i~vDG 248 (258)
T d1qsga_ 210 ----E--AVTPIR----RTVTIEDVGNSAAFLCSDLSAGISGEVVHVDG 248 (258)
T ss_dssp ----H--HHSTTS----SCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ----H--hCCCCC----CCcCHHHHHHHHHHHhCchhcCccCceEEECc
Confidence 1 122321 13456889999999885432 3566777654
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.1e-06 Score=90.71 Aligned_cols=218 Identities=11% Similarity=0.080 Sum_probs=126.6
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
.+++.+|||||++-||..++++|++++ ++|+...|..+..+ .+ .... ..+......|+.....
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~---~~---~~~l---------~~~~~~~~~~~~~~~~- 65 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLPNSGGE---AQ---AKKL---------GNNCVFAPADVTSEKD- 65 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSSHH---HH---HHHH---------CTTEEEEECCTTCHHH-
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHHHH---HH---HHHh---------CCCccccccccccccc-
Confidence 478899999999999999999999875 68887777654321 11 1111 2344555556543210
Q ss_pred CCc-HHHHHHHhcccCEEEEcccccCccc-------------ChHHHHhhhHHHHHHHHHhhccC----------CCccE
Q psy4557 397 LKN-QDEYVSLSYEIDMIIHAAAFVNLIL-------------PYNALYKSNVLATKNLIEFSFLN----------KIKSF 452 (958)
Q Consensus 397 L~~-~~~~~~l~~~vd~IiH~AA~v~~~~-------------~~~~~~~~NV~gt~~ll~~a~~~----------~~k~~ 452 (958)
..+ ...........|.+++++...+... .+.....+|+.|+.++.+.+... +...+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~I 145 (248)
T d2o23a1 66 VQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVI 145 (248)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEE
T ss_pred ccccccccccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEE
Confidence 000 0011122346789998876543221 23456778999999988776321 12368
Q ss_pred EEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChh
Q psy4557 453 HYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLV 528 (958)
Q Consensus 453 ~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~ 528 (958)
+++||...+-+. .....|+.||..-+.+.+.. ..+|+.+..+-||.+.-+.....+ .
T Consensus 146 i~isS~~~~~~~-----------------~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~--~ 206 (248)
T d2o23a1 146 INTASVAAFEGQ-----------------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLP--E 206 (248)
T ss_dssp EEECCTHHHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC---------
T ss_pred EEecchhhccCC-----------------CCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCC--H
Confidence 999987653210 11246999999999998763 346999999999988543321111 1
Q ss_pred HHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEe
Q psy4557 529 DLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNF 579 (958)
Q Consensus 529 d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~ 579 (958)
++...+ . ...|-.. -+.-.+++|++++.+..+..-.|++.|+
T Consensus 207 ~~~~~~----~--~~~pl~~---R~g~peevA~~v~fL~s~~~itGq~I~v 248 (248)
T d2o23a1 207 KVCNFL----A--SQVPFPS---RLGDPAEYAHLVQAIIENPFLNGEVIRL 248 (248)
T ss_dssp ---CHH----H--HTCSSSC---SCBCHHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred HHHHHH----H--hcCCCCC---CCcCHHHHHHHHHHHHhCCCCCceEeEC
Confidence 111111 1 1123111 1345678899998887544334555543
|
| >d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=3e-07 Score=76.58 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHcCCC--CCCCCCchh-hcCccHHHHHHHHHHHHHHhCCCCChHHHhcCCcHHHHHHHHhcc
Q psy4557 204 QSQKNIAKIWCKILNLY--TLDKDENFF-EIGGHSLTAALCISKMNEELSLNLSIKDLFAHPTVQEMAALLENK 274 (958)
Q Consensus 204 ~~e~~l~~iw~~vL~~~--~i~~~~~FF-~lGgdSL~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~la~~i~~~ 274 (958)
..+.++.++.++.++.+ .+.++.+|. ++|.|||..++|...|.++||++++..++...+|++++.++|.++
T Consensus 2 ~I~~~v~~iia~~l~i~~~~i~~~~~l~~dLg~DSl~~~el~~~iE~~f~i~i~~~~~~~~~Tv~dlv~~i~~~ 75 (77)
T d1t8ka_ 2 TIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 75 (77)
T ss_dssp CHHHHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCHHHcCCCCcchhccccchhHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHc
Confidence 35788999999999986 588999998 599999999999999999999999999999999999999999753
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.40 E-value=3.3e-07 Score=97.48 Aligned_cols=168 Identities=9% Similarity=0.034 Sum_probs=106.4
Q ss_pred cccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCC------hhhHHHHHHHHHHHhccccccccccCceEEecccC
Q psy4557 317 LKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETP------NKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDL 390 (958)
Q Consensus 317 ~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~------~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl 390 (958)
.++|++|||||++-||..+.+.|++++ ++|+...|..+ .....+++.+.+... ...+..|+
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~G-a~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~d~ 71 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR------------GGKAVANY 71 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT------------TCEEEEEC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchhhhhhhhHHHHHHHHHHHhhc------------cccccccc
Confidence 467899999999999999999998775 67766655432 122233333222211 12223344
Q ss_pred CCCCCCCCcHHHHHHH---hcccCEEEEcccccCcc----c---ChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEe
Q psy4557 391 SLEMLGLKNQDEYVSL---SYEIDMIIHAAAFVNLI----L---PYNALYKSNVLATKNLIEFSF----LNKIKSFHYVS 456 (958)
Q Consensus 391 ~~~~lGL~~~~~~~~l---~~~vd~IiH~AA~v~~~----~---~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vS 456 (958)
+...- ....++.. ...+|++||||+..... . .++...++|+.|+..+.+.+. +.+..+++++|
T Consensus 72 ~~~~~---~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~is 148 (302)
T d1gz6a_ 72 DSVEA---GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTA 148 (302)
T ss_dssp CCGGG---HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred chHHH---HHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeC
Confidence 32210 01122222 24799999999975321 1 234567899999999988764 23345899999
Q ss_pred cccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCcee
Q psy4557 457 TDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIG 517 (958)
Q Consensus 457 T~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~ 517 (958)
|.+.+-.. .....|+.||..-+.+.+.. ..+|+.+..+-||.+.
T Consensus 149 S~~~~~~~-----------------~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~ 196 (302)
T d1gz6a_ 149 SASGIYGN-----------------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGS 196 (302)
T ss_dssp CHHHHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCS
T ss_pred ChhhcCCC-----------------CCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCC
Confidence 87643110 11247999999999888653 3469999999998764
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.30 E-value=2.4e-06 Score=89.17 Aligned_cols=181 Identities=16% Similarity=0.165 Sum_probs=117.1
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
.++||||||-||..++++|.++|+.|+.++|+. +|++|.++++++++.. ++|++
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~---------------------~D~~d~~~~~~~l~~~-----~~d~v 56 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------------LDITNVLAVNKFFNEK-----KPNVV 56 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------------CCTTCHHHHHHHHHHH-----CCSEE
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh---------------------ccCCCHHHHHHHHHHc-----CCCEE
Confidence 389999999999999999999999999998762 4899999988777643 58999
Q ss_pred EEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC-----------CCCCChhh
Q psy4557 798 VNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR-----------PFAGLAVY 866 (958)
Q Consensus 798 InnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~-----------~~~~~~~Y 866 (958)
||+|+...... ........+..|......+....... ...+++.||..... +......|
T Consensus 57 ih~a~~~~~~~----~~~~~~~~~~~n~~~~~~~~~~~~~~------~~~~~~~ss~~v~~~~~~~~~~e~~~~~~~~~~ 126 (281)
T d1vl0a_ 57 INCAAHTAVDK----CEEQYDLAYKINAIGPKNLAAAAYSV------GAEIVQISTDYVFDGEAKEPITEFDEVNPQSAY 126 (281)
T ss_dssp EECCCCCCHHH----HHHCHHHHHHHHTHHHHHHHHHHHHH------TCEEEEEEEGGGSCSCCSSCBCTTSCCCCCSHH
T ss_pred Eeecccccccc----ccccchhhcccccccccccccccccc------cccccccccceeeeccccccccccccccchhhh
Confidence 99998754221 22333566778887777665544331 23566666553221 12245668
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCCCChhhhhhhc------c--ccCCCCCCHHHHHHHHHHHh
Q psy4557 867 TGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHSTDRDVVDKYD------I--SKAVPVLTTKEISQSIIFAL 938 (958)
Q Consensus 867 ~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~~~~~~~~~~~------~--~~~~~~~~p~~ia~~i~~~l 938 (958)
+.+|...+.+.+. .+.+...+.|+.+.-+-... ......... . .........+|+++++.+++
T Consensus 127 ~~~k~~~e~~~~~-------~~~~~~i~R~~~vyG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~ 197 (281)
T d1vl0a_ 127 GKTKLEGENFVKA-------LNPKYYIVRTAWLYGDGNNF--VKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVI 197 (281)
T ss_dssp HHHHHHHHHHHHH-------HCSSEEEEEECSEESSSSCH--HHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHH-------hCCCccccceeEEeCCCccc--ccchhhhhccCCceeecCCceeccchhhhhhhhhhhhh
Confidence 9888877665432 25567788998886542110 001110000 0 01123567889999988887
Q ss_pred cCCCC
Q psy4557 939 LQPSH 943 (958)
Q Consensus 939 ~~~~~ 943 (958)
..+..
T Consensus 198 ~~~~~ 202 (281)
T d1vl0a_ 198 DEKNY 202 (281)
T ss_dssp HHTCC
T ss_pred hhccc
Confidence 66544
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=98.29 E-value=3.1e-06 Score=88.82 Aligned_cols=191 Identities=15% Similarity=0.140 Sum_probs=109.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhH---HHH--HHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRL---ENL--KTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l---~~~--~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
-|.+|||||+|-||..++++|.++|+.|+++.|+.... +.. ...+. ...+.++.+|+.+.....+.++
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~----- 75 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVK----- 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHH-----
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhc--cCCcEEEEeecccchhhhhhhh-----
Confidence 46799999999999999999999999999999975432 111 12222 2346678899999877655443
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCCCCChhhhHHH
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPFAGLAVYTGTK 870 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~~~~~~Y~asK 870 (958)
..|.+|++++..... +...+.+++.. . ....+++.||............+...+
T Consensus 76 --~~~~vi~~~~~~~~~-------------------~~~~~~~a~~~----~-~~~~~~~~s~~~~~~~~~~~~~~~~~~ 129 (307)
T d1qyca_ 76 --NVDVVISTVGSLQIE-------------------SQVNIIKAIKE----V-GTVKRFFPSEFGNDVDNVHAVEPAKSV 129 (307)
T ss_dssp --TCSEEEECCCGGGSG-------------------GGHHHHHHHHH----H-CCCSEEECSCCSSCTTSCCCCTTHHHH
T ss_pred --hceeeeecccccccc-------------------hhhHHHHHHHH----h-ccccceeeecccccccccccccccccc
Confidence 468889988764221 11122222211 1 224666666655443333333344444
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC----C---Chhhhhhh-ccccCCCCCCHHHHHHHHHHHhcCCC
Q psy4557 871 YFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS----T---DRDVVDKY-DISKAVPVLTTKEISQSIIFALLQPS 942 (958)
Q Consensus 871 aa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~----~---~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~~~~ 942 (958)
............+ .|+....+.|+.+.-+..... . ........ .......++..+|+|++++.++.++.
T Consensus 130 ~~~~~~~~~~~~~---~~~~~~i~r~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~ 206 (307)
T d1qyca_ 130 FEVKAKVRRAIEA---EGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPR 206 (307)
T ss_dssp HHHHHHHHHHHHH---HTCCBEEEECCEEHHHHTTTTTCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGG
T ss_pred ccccccccchhhc---cCCCceecccceecCCCccchhhhhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhcChh
Confidence 4333333332223 467778888887753321110 0 00000000 00112346789999999999887664
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=98.28 E-value=2.9e-06 Score=89.71 Aligned_cols=189 Identities=12% Similarity=0.081 Sum_probs=107.6
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh--HHHH--HHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR--LENL--KTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~--l~~~--~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.++||||+|-||+.++++|+++|++|+++.|+... ..+. ...+.. ..+.++++|+++.+++.+.+ ..
T Consensus 5 KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~--~~v~~v~~d~~d~~~~~~~~-------~~ 75 (312)
T d1qyda_ 5 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ--LGAKLIEASLDDHQRLVDAL-------KQ 75 (312)
T ss_dssp CEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHT--TTCEEECCCSSCHHHHHHHH-------TT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhcc--CCcEEEEeecccchhhhhhc-------cC
Confidence 48999999999999999999999999999997532 1111 122222 34778899999987765544 35
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC-----CCChhhhH
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF-----AGLAVYTG 868 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~-----~~~~~Y~a 868 (958)
.+.++++++...... |..+...++.++ .+. ...++++.||....... .....|..
T Consensus 76 ~~~~~~~~~~~~~~~---------------~~~~~~~~l~~a----~~~-~~~~~v~~Ss~g~~~~~~~~~~~~~~~~~~ 135 (312)
T d1qyda_ 76 VDVVISALAGGVLSH---------------HILEQLKLVEAI----KEA-GNIKRFLPSEFGMDPDIMEHALQPGSITFI 135 (312)
T ss_dssp CSEEEECCCCSSSST---------------TTTTHHHHHHHH----HHS-CCCSEEECSCCSSCTTSCCCCCSSTTHHHH
T ss_pred cchhhhhhhhccccc---------------chhhhhHHHHHH----HHh-cCCcEEEEeeccccCCCcccccchhhhhhH
Confidence 788888887643211 122222223322 212 23456666665432211 12233455
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCCCCCCC---C-----Chhhhhhh-ccccCCCCCCHHHHHHHHHHHhc
Q psy4557 869 TKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTELLSHS---T-----DRDVVDKY-DISKAVPVLTTKEISQSIIFALL 939 (958)
Q Consensus 869 sKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~~~~~~---~-----~~~~~~~~-~~~~~~~~~~p~~ia~~i~~~l~ 939 (958)
+|..+..+ . ...|+.+..+.||.+.-+..... . .......+ .......++..+|+|++++.++.
T Consensus 136 ~~~~~~~~----~---~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~ 208 (312)
T d1qyda_ 136 DKRKVRRA----I---EAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSID 208 (312)
T ss_dssp HHHHHHHH----H---HHTTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHHh----h---cccccceEEeccceeecCCccchhhHHHHhhhcccccccccccccccceeeHHHHHHHHHHHhc
Confidence 55444433 2 23467778888887753211110 0 00000000 00111235788999999999887
Q ss_pred CCC
Q psy4557 940 QPS 942 (958)
Q Consensus 940 ~~~ 942 (958)
++.
T Consensus 209 ~~~ 211 (312)
T d1qyda_ 209 DPQ 211 (312)
T ss_dssp CGG
T ss_pred Ccc
Confidence 764
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=98.25 E-value=6.3e-06 Score=86.07 Aligned_cols=217 Identities=17% Similarity=0.078 Sum_probs=122.5
Q ss_pred cccCceEEecccc--chHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCC
Q psy4557 317 LKYGNVLLTGVTG--YLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEM 394 (958)
Q Consensus 317 ~~~~~VllTGaTG--flGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~ 394 (958)
.++|++|||||+| -||..+.+.|+++ +++|++..|.... .+++++.... .....++..|++.+
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~-Ga~V~i~~r~~~~---~~~~~~l~~~----------~~~~~~~~~d~~~~- 67 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNESL---EKRVRPIAQE----------LNSPYVYELDVSKE- 67 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESSTTT---HHHHHHHHHH----------TTCCCEEECCTTCH-
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHH---HHHHHHHHhh----------CCceeEeeecccch-
Confidence 3578999999987 5999999998865 5788888886432 2333332221 12344566776642
Q ss_pred CCCCcHHHHHHH-------hcccCEEEEcccccCcc---cChH-----HHHh---hhHHHHHHHHHhhccC-CCc-cEEE
Q psy4557 395 LGLKNQDEYVSL-------SYEIDMIIHAAAFVNLI---LPYN-----ALYK---SNVLATKNLIEFSFLN-KIK-SFHY 454 (958)
Q Consensus 395 lGL~~~~~~~~l-------~~~vd~IiH~AA~v~~~---~~~~-----~~~~---~NV~gt~~ll~~a~~~-~~k-~~~~ 454 (958)
+....+ ...+|++||+++..... .++. .+.. .+..+...+....... +.. .++.
T Consensus 68 ------~~~~~~~~~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 141 (274)
T d2pd4a1 68 ------EHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLT 141 (274)
T ss_dssp ------HHHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ------hhHHHHHHHHHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceee
Confidence 222222 35789999999964321 1111 1111 2222333343333221 112 3444
Q ss_pred EecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHH
Q psy4557 455 VSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDL 530 (958)
Q Consensus 455 vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~ 530 (958)
+|+.+..+.. .....|+.||..-+.+++.. ..+|+++..+.||.+.-+...+..+....
T Consensus 142 ~s~~~~~~~~-----------------~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~ 204 (274)
T d2pd4a1 142 LSYLGSTKYM-----------------AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMI 204 (274)
T ss_dssp EECGGGTSBC-----------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHH
T ss_pred eccccccccc-----------------ccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHH
Confidence 4444332210 12347999999999988653 34699999999998865543333222221
Q ss_pred HHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 531 NLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 531 ~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
. ... ... .| . --+...+.+|++++.|+.... -.|.++++..
T Consensus 205 ~-~~~---~~~--~p-~---~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDG 247 (274)
T d2pd4a1 205 L-KWN---EIN--AP-L---RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDA 247 (274)
T ss_dssp H-HHH---HHH--ST-T---SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred H-HHH---hhh--hh-c---cCCcCHHHHHHHHHHHhChhhCCCcCceEEECC
Confidence 1 111 111 12 1 124568899999998876432 3577777764
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=98.22 E-value=2e-05 Score=82.44 Aligned_cols=221 Identities=14% Similarity=0.027 Sum_probs=125.4
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCC-------
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLE------- 393 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~------- 393 (958)
.+|||||++=||..+.++|++++ ++|+...|... ...+.+.+.+... .......+..|++..
T Consensus 4 VAlITGas~GIG~aiA~~la~~G-a~V~i~~~~~~--~~~~~~~~~l~~~--------~~~~~~~~~~d~~~~~~~~~~~ 72 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSA--AEANALSATLNAR--------RPNSAITVQADLSNVATAPVSG 72 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCH--HHHHHHHHHHHHH--------STTCEEEEECCCSSSCBCCCC-
T ss_pred EEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCCH--HHHHHHHHHHHhh--------cCCceEEEEeeccccccccccc
Confidence 57999999999999999999775 66665444332 2223333333221 123444555554332
Q ss_pred ---CCCCCcHHHHHHHh-------cccCEEEEcccccCccc-------C--------------hHHHHhhhHHHHHHHHH
Q psy4557 394 ---MLGLKNQDEYVSLS-------YEIDMIIHAAAFVNLIL-------P--------------YNALYKSNVLATKNLIE 442 (958)
Q Consensus 394 ---~lGL~~~~~~~~l~-------~~vd~IiH~AA~v~~~~-------~--------------~~~~~~~NV~gt~~ll~ 442 (958)
..++++.++.+.+. ..+|++||||+...... . ...++.+|+.+...+.+
T Consensus 73 ~~~~~dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 152 (284)
T d1e7wa_ 73 ADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIK 152 (284)
T ss_dssp ---CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeec
Confidence 23344445555443 47999999999753210 0 11356788888887776
Q ss_pred hhcc----------CCCccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCE
Q psy4557 443 FSFL----------NKIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPV 508 (958)
Q Consensus 443 ~a~~----------~~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~ 508 (958)
.+.. .+...++++|+.....+ ......|+.||..-+.+.+.. ..+|+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~ii~~~s~~~~~~-----------------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrv 215 (284)
T d1e7wa_ 153 AFAHRVAGTPAKHRGTNYSIINMVDAMTNQP-----------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRV 215 (284)
T ss_dssp HHHHHHHTSCGGGSCSCEEEEEECCTTTTSC-----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred cccchhhhhHHHhcCCCCcccccccccccCC-----------------ccceeeeccccccchhhhHHHHHHhCCccccc
Confidence 5321 12234555555432110 012247999999999988763 3569999
Q ss_pred EEEecCceeccCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecCC
Q psy4557 509 SIVRCGNIGGSLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFINT 582 (958)
Q Consensus 509 ~I~R~g~i~G~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n~ 582 (958)
..+-||.+-... ....+. .+... ...|-.. -+...+.+|++++.|+.... -.|.+..+...
T Consensus 216 N~I~PG~t~~~~----~~~~~~----~~~~~--~~~pl~~---R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG 278 (284)
T d1e7wa_ 216 NGVGPGLSVLVD----DMPPAV----WEGHR--SKVPLYQ---RDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGG 278 (284)
T ss_dssp EEEEESSBCCGG----GSCHHH----HHHHH--TTCTTTT---SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cccccccccccc----cCCHHH----HHHHH--hcCCCCC---CCCCHHHHHHHHHHHhCchhcCccCCeEEECcC
Confidence 999999632111 111222 12111 1233211 23457889999998875432 35677777654
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=98.17 E-value=3.3e-06 Score=88.67 Aligned_cols=128 Identities=18% Similarity=0.147 Sum_probs=89.3
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
.+|||||+|=||.+++++|.++|..|+ ++++... +..|++|.+.++++++.. ++|++
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g~~v~-~~~~~~~-----------------~~~Dl~~~~~~~~~i~~~-----~~D~V 58 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSKE-----------------FCGDFSNPKGVAETVRKL-----RPDVI 58 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTSEEEE-ECTTCSS-----------------SCCCTTCHHHHHHHHHHH-----CCSEE
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEE-EECCCcc-----------------ccCcCCCHHHHHHHHHHc-----CCCEE
Confidence 489999999999999999999996554 4444211 236999999988877654 58999
Q ss_pred EEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC-----------CCCChhh
Q psy4557 798 VNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP-----------FAGLAVY 866 (958)
Q Consensus 798 InnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~-----------~~~~~~Y 866 (958)
||+||....... ...+ ...+++|..++..+..++. ..+.+++++||...... ......|
T Consensus 59 ih~Aa~~~~~~~-~~~~---~~~~~~n~~~~~~l~~~~~------~~~~~~~~~ss~~~~~~~~~~~~~E~~~~~p~~~y 128 (298)
T d1n2sa_ 59 VNAAAHTAVDKA-ESEP---ELAQLLNATSVEAIAKAAN------ETGAWVVHYSTDYVFPGTGDIPWQETDATSPLNVY 128 (298)
T ss_dssp EECCCCCCHHHH-TTCH---HHHHHHHTHHHHHHHHHHT------TTTCEEEEEEEGGGSCCCTTCCBCTTSCCCCSSHH
T ss_pred EEeccccccccc-ccCc---cccccccccccccchhhhh------ccccccccccccccccCCCCCCCccccccCCCchH
Confidence 999997643222 1222 5678999999888777651 23357888877653221 1134579
Q ss_pred hHHHHHHHHHHH
Q psy4557 867 TGTKYFIEGISG 878 (958)
Q Consensus 867 ~asKaa~~~l~~ 878 (958)
+.+|.+.+.+.+
T Consensus 129 ~~~k~~~e~~~~ 140 (298)
T d1n2sa_ 129 GKTKLAGEKALQ 140 (298)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhhhhhhhHH
Confidence 999988776543
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=98.09 E-value=8.8e-05 Score=77.90 Aligned_cols=238 Identities=10% Similarity=-0.011 Sum_probs=126.0
Q ss_pred cccCceEEecccc--chHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHH-Hhcccccccc-ccCceEEecccCCC
Q psy4557 317 LKYGNVLLTGVTG--YLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIML-KYHMSLDLNN-YTDRLILVKSDLSL 392 (958)
Q Consensus 317 ~~~~~VllTGaTG--flGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~-~~~~~~~~~~-~~~ri~~v~gDl~~ 392 (958)
.++|++|||||+| =||..+.++|+++ +++|++..|..........+..... .-........ -..++..+..++..
T Consensus 6 L~gK~alVTGass~~GIG~aiA~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (297)
T d1d7oa_ 6 LRGKRAFIAGIADDNGYGWAVAKSLAAA-GAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHC-CCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhccc
Confidence 4678999999987 5999999999977 4777776664221111111110000 0000000000 01122333322221
Q ss_pred CCC--------------CCCcHH-HHHHH---hcccCEEEEcccccCc-cc-----C---hHHHHhhhHHHHHHHHHhhc
Q psy4557 393 EML--------------GLKNQD-EYVSL---SYEIDMIIHAAAFVNL-IL-----P---YNALYKSNVLATKNLIEFSF 445 (958)
Q Consensus 393 ~~l--------------GL~~~~-~~~~l---~~~vd~IiH~AA~v~~-~~-----~---~~~~~~~NV~gt~~ll~~a~ 445 (958)
+.. .....+ ..+.+ ...+|++||+|+.... .. + +.....+|+.++.++.+.+.
T Consensus 85 ~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~ 164 (297)
T d1d7oa_ 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred cccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHHH
Confidence 110 001111 11112 2478999999986421 11 2 33456789999998887765
Q ss_pred cCC--CccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHH-----HhhCCCCEEEEecCceec
Q psy4557 446 LNK--IKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLN-----AGQMGLPVSIVRCGNIGG 518 (958)
Q Consensus 446 ~~~--~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~-----a~~~glp~~I~R~g~i~G 518 (958)
... -...+.+|+.+...... .....|..+|...+.+.+. +.++|+.+..+.||.+..
T Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T 228 (297)
T d1d7oa_ 165 PIMNPGGASISLTYIASERIIP----------------GYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228 (297)
T ss_dssp GGEEEEEEEEEEECGGGTSCCT----------------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBC
T ss_pred HHhhcCCcceeeeehhhccccc----------------ccccceecccccccccccccchhccccceEEecccccccccc
Confidence 321 12455555544321100 1234799999999988764 234699999999999965
Q ss_pred cCCCCCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 519 SLEFKNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 519 ~~~~g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
+.........++. +.... ..|-. .+.-.|.+|++++.|+.... -.|++.++..
T Consensus 229 ~~~~~~~~~~~~~----~~~~~--~~Plg----R~~~peevA~~v~fL~S~~a~~itGq~i~vDG 283 (297)
T d1d7oa_ 229 RAAKAIGFIDTMI----EYSYN--NAPIQ----KTLTADEVGNAAAFLVSPLASAITGATIYVDN 283 (297)
T ss_dssp CCSSCCSHHHHHH----HHHHH--HSSSC----CCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred hhhhhccCCHHHH----HHHHh--CCCCC----CCCCHHHHHHHHHHHhCchhcCCcCceEEECc
Confidence 5433222222222 22222 12311 13456789999999885432 3566776653
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=98.07 E-value=1.5e-05 Score=86.24 Aligned_cols=152 Identities=14% Similarity=0.062 Sum_probs=95.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
+.|+++||||||.||.+++++|.++|++|+++.|+.++... ..+.. ...+.+++.|+.|..+. ++ ..+...
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~-~~~v~~~~gD~~d~~~~---~~---~a~~~~ 72 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQA-IPNVTLFQGPLLNNVPL---MD---TLFEGA 72 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHT-STTEEEEESCCTTCHHH---HH---HHHTTC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhcc-cCCCEEEEeeCCCcHHH---HH---HHhcCC
Confidence 46899999999999999999999999999999998765432 22222 23578889999986543 22 224567
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC--CCChhhhHHHHH
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF--AGLAVYTGTKYF 872 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~--~~~~~Y~asKaa 872 (958)
|.++.+...... . |+.....++.++.. . +..+++..||....... .....|..+|..
T Consensus 73 ~~~~~~~~~~~~------~----------~~~~~~~~~~aa~~----a-gv~~~v~~Ss~~~~~~~~~~~~~~~~~~k~~ 131 (350)
T d1xgka_ 73 HLAFINTTSQAG------D----------EIAIGKDLADAAKR----A-GTIQHYIYSSMPDHSLYGPWPAVPMWAPKFT 131 (350)
T ss_dssp SEEEECCCSTTS------C----------HHHHHHHHHHHHHH----H-SCCSEEEEEECCCGGGTSSCCCCTTTHHHHH
T ss_pred ceEEeecccccc------h----------hhhhhhHHHHHHHH----h-CCCceEEEeeccccccCCcccchhhhhhHHH
Confidence 777666543211 1 11222223333321 1 22456667776554332 233457778876
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEECCcccCCC
Q psy4557 873 IEGISGALRQEVSDRNIKVTCIQAGDVKTEL 903 (958)
Q Consensus 873 ~~~l~~~la~el~~~gIrv~~v~PG~v~T~~ 903 (958)
...+.+ ..++....+.||++..++
T Consensus 132 ~~~~~~-------~~~~~~~~vr~~~~~~~~ 155 (350)
T d1xgka_ 132 VENYVR-------QLGLPSTFVYAGIYNNNF 155 (350)
T ss_dssp HHHHHH-------TSSSCEEEEEECEEGGGC
T ss_pred HHHHHH-------hhccCceeeeeceeeccc
Confidence 665533 345778888888776544
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.99 E-value=2e-05 Score=80.33 Aligned_cols=208 Identities=14% Similarity=0.080 Sum_probs=120.3
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
|++|||||++-||..+.++|++++ ++|+...|.... .+.....+|++....-...
T Consensus 2 K~alITGas~GIG~aiA~~la~~G-a~V~i~~~~~~~------------------------~~~~~~~~d~~~~~~~~~~ 56 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARG-YRVVVLDLRREG------------------------EDLIYVEGDVTREEDVRRA 56 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSCCS------------------------SSSEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCccc------------------------ccceEeeccccchhhhHHH
Confidence 689999999999999999999774 678777764321 2344566776643211100
Q ss_pred HHHHHHHhcccCEEEEcccccCc--------cc---ChHHHHhhhHHHHHHHHHhhcc----------CCCccEEEEecc
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVNL--------IL---PYNALYKSNVLATKNLIEFSFL----------NKIKSFHYVSTD 458 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~~--------~~---~~~~~~~~NV~gt~~ll~~a~~----------~~~k~~~~vST~ 458 (958)
..........+.++++++.... .. .++...+.|+.+...+.+.+.. .+.-+++++||.
T Consensus 57 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~ 135 (241)
T d1uaya_ 57 -VARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASV 135 (241)
T ss_dssp -HHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCT
T ss_pred -HHhhhccccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecch
Confidence 0001112334555555543211 11 2334567888888777654421 123479999987
Q ss_pred cccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHH
Q psy4557 459 SIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYI 534 (958)
Q Consensus 459 ~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l 534 (958)
..+-.. .....|+.||..-+.+.+.. ..+|+.+..+-||.|--+..... . .+..
T Consensus 136 ~~~~~~-----------------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~-~-~~~~--- 193 (241)
T d1uaya_ 136 AAFEGQ-----------------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL-P-EKAK--- 193 (241)
T ss_dssp HHHHCC-----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS-C-HHHH---
T ss_pred hhccCC-----------------CCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchh-h-hhHH---
Confidence 653211 11347999999999988753 35699999999998854321111 1 1111
Q ss_pred HHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcCCCCceEEecC
Q psy4557 535 LKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVNNANKIYNFIN 581 (958)
Q Consensus 535 ~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~~~~~v~h~~n 581 (958)
... ....|-.. -+.-.+++|++++.|+.+..-.|++.++..
T Consensus 194 -~~~--~~~~~~~~---R~g~pedvA~~v~fL~s~~~iTG~~i~VDG 234 (241)
T d1uaya_ 194 -ASL--AAQVPFPP---RLGRPEEYAALVLHILENPMLNGEVVRLDG 234 (241)
T ss_dssp -HHH--HTTCCSSC---SCCCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred -HHH--HhcCCCCC---CCcCHHHHHHHHHHHHhCCCCCCCEEEECC
Confidence 111 11222111 133457889999988765444577777754
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.86 E-value=0.0004 Score=71.30 Aligned_cols=217 Identities=15% Similarity=0.041 Sum_probs=117.9
Q ss_pred ceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCcH
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKNQ 400 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~~ 400 (958)
..|||||++=||..+.++|++++ ++|+...|.... ..+++.+.+... ...+...+..|+.... +..
T Consensus 3 vAlVTGas~GIG~aia~~la~~G-~~Vvi~~r~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---~~~ 68 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEG--AAQRLVAELNAA--------RAGSAVLCKGDLSLSS---SLL 68 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHH--HHHHHHHHHHHH--------STTCEEEEECCCSSST---THH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchH--HHHHHHHHHHhh--------cCCceEEEecccccch---hHH
Confidence 57999999999999999999875 677777765332 223333222211 1245555555543211 111
Q ss_pred HHHHHH-------hcccCEEEEcccccCccc--------------C----hHHHHhhhHHHHHHHHHhhccC--------
Q psy4557 401 DEYVSL-------SYEIDMIIHAAAFVNLIL--------------P----YNALYKSNVLATKNLIEFSFLN-------- 447 (958)
Q Consensus 401 ~~~~~l-------~~~vd~IiH~AA~v~~~~--------------~----~~~~~~~NV~gt~~ll~~a~~~-------- 447 (958)
+....+ ...+|++||||+...... . ...+...|+.+...........
T Consensus 69 ~~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
T d1mxha_ 69 DCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWR 148 (266)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccc
Confidence 222222 246999999999643211 0 1123344555544444333221
Q ss_pred -CCccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCC
Q psy4557 448 -KIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEF 522 (958)
Q Consensus 448 -~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~ 522 (958)
....++.+|+...... ......|+.||..-+.+.+.. ..+|+.+..+.||.+.-+.
T Consensus 149 ~~~~~~~~~~~~~~~~~-----------------~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~-- 209 (266)
T d1mxha_ 149 SRNLSVVNLCDAMTDLP-----------------LPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPP-- 209 (266)
T ss_dssp CCCEEEEEECCGGGGSC-----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCS--
T ss_pred cccccchhhhhcccccc-----------------CcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccc--
Confidence 1123333443322110 012347999999999888753 3469999999999875332
Q ss_pred CCcChhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 523 KNWNLVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 523 g~~n~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
+...++...+ . ...|-. .-+...+.+|++++.|+.... -.|.++++..
T Consensus 210 --~~~~~~~~~~----~--~~~pl~---r~~~~peeva~~v~fL~s~~s~~itG~~i~vDG 259 (266)
T d1mxha_ 210 --AMPQETQEEY----R--RKVPLG---QSEASAAQIADAIAFLVSKDAGYITGTTLKVDG 259 (266)
T ss_dssp --SSCHHHHHHH----H--TTCTTT---SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --cCCHHHHHHH----H--hcCCCC---CCCCCHHHHHHHHHHHhCchhCCccCCeEEECc
Confidence 2222222211 1 122311 112346779999999886542 3577777754
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=97.85 E-value=6.1e-05 Score=77.90 Aligned_cols=221 Identities=14% Similarity=0.109 Sum_probs=119.7
Q ss_pred cccCceEEeccccc--hHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCC
Q psy4557 317 LKYGNVLLTGVTGY--LGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEM 394 (958)
Q Consensus 317 ~~~~~VllTGaTGf--lGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~ 394 (958)
.++|++|||||+|- ||..+.++|.+++ ++|+...|... ...+++.+ ....+...+..|++.+
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~G-a~Vil~~~~~~--~~~~~~~~------------~~~~~~~~~~~dv~~~- 67 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRL--RLIQRITD------------RLPAKAPLLELDVQNE- 67 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTT-CEEEEEECSCH--HHHHHHHT------------TSSSCCCEEECCTTCH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcC-CEEEEEeCChH--HHHHHHHH------------HcCCceeeEeeecccc-
Confidence 36789999998764 9999999988765 67776666432 12222221 1235667778888742
Q ss_pred CCCCcHHHHHHH----------hcccCEEEEcccccCcc---------cChHHH---HhhhHHHHHHHHHhhccCC-Ccc
Q psy4557 395 LGLKNQDEYVSL----------SYEIDMIIHAAAFVNLI---------LPYNAL---YKSNVLATKNLIEFSFLNK-IKS 451 (958)
Q Consensus 395 lGL~~~~~~~~l----------~~~vd~IiH~AA~v~~~---------~~~~~~---~~~NV~gt~~ll~~a~~~~-~k~ 451 (958)
+....+ ...+|+++|+|+..... .++..+ ...|+.+.....+.+.... ...
T Consensus 68 ------~~~~~~~~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (268)
T d2h7ma1 68 ------EHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGG 141 (268)
T ss_dssp ------HHHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEE
T ss_pred ------cccccccchhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccccc
Confidence 222222 13579999999864211 122222 2345555555544443221 122
Q ss_pred EEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCC---
Q psy4557 452 FHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKN--- 524 (958)
Q Consensus 452 ~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~--- 524 (958)
.+.++|.+..... .....|+.||...+.+++.. ..+|+.+..+.||.+-.+...+.
T Consensus 142 ~i~~~s~~~~~~~-----------------p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~ 204 (268)
T d2h7ma1 142 SIVGMDFDPSRAM-----------------PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGG 204 (268)
T ss_dssp EEEEEECCCSSCC-----------------TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTT
T ss_pred ccccccccccccC-----------------cccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccc
Confidence 3333333221100 11347999999999988753 34699999999998864321111
Q ss_pred -cC--hhHHHHHHHHHHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 525 -WN--LVDLNLYILKAITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 525 -~n--~~d~~~~l~~~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
.. .......+.....+ ..|-. ..+.-.+.+|++++.++.... -.|.+..+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~--~~pl~---rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDG 261 (268)
T d2h7ma1 205 ALGEEAGAQIQLLEEGWDQ--RAPIG---WNMKDATPVAKTVCALLSDWLPATTGDIIYADG 261 (268)
T ss_dssp TTCHHHHHHHHHHHHHHHH--HCTTC---CCTTCCHHHHHHHHHHHSSSCTTCCSEEEEEST
T ss_pred hhhhhhccchHHHHHHHHh--cCCCC---CCCCCHHHHHHHHHHHhCchhcCccCCEEEECc
Confidence 11 11111222222222 11211 113446779999999885322 2455555543
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.70 E-value=0.00011 Score=78.63 Aligned_cols=178 Identities=11% Similarity=0.097 Sum_probs=98.6
Q ss_pred CceEEec--cccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhcccc--ccccccCceEEecccCCCCC-
Q psy4557 320 GNVLLTG--VTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSL--DLNNYTDRLILVKSDLSLEM- 394 (958)
Q Consensus 320 ~~VllTG--aTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~--~~~~~~~ri~~v~gDl~~~~- 394 (958)
+..|||| ++.=||..+.+.|.++ +++|++..|.......... ....++.... ..............|.+...
T Consensus 3 kVAlITGaa~s~GIG~aiA~~la~~-GA~V~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (329)
T d1uh5a_ 3 DICFIAGIGDTNGYGWGIAKELSKR-NVKIIFGIWPPVYNIFMKN--YKNGKFDNDMIIDKDKKMNILDMLPFDASFDTA 79 (329)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEECGGGHHHHHHH--HHTTTTTGGGEETTTEECCEEEEEECCTTCSSG
T ss_pred cEEEEeCCCCCChHHHHHHHHHHHc-CCEEEEEeCchhhhhhhHH--HHHHhhhhHHHHHHHhhhhhhhcccccceehhh
Confidence 5689999 4456999999998876 4677765554332211111 0111111000 00001111223333333211
Q ss_pred ------------CCCCcHHHHHH-------HhcccCEEEEcccccCcc-c--------ChHHHHhhhHHHHHHHHHhhcc
Q psy4557 395 ------------LGLKNQDEYVS-------LSYEIDMIIHAAAFVNLI-L--------PYNALYKSNVLATKNLIEFSFL 446 (958)
Q Consensus 395 ------------lGL~~~~~~~~-------l~~~vd~IiH~AA~v~~~-~--------~~~~~~~~NV~gt~~ll~~a~~ 446 (958)
+.+.+.+..+. ...++|++||+|+..... . .|.....+|+.|+..+.+.+..
T Consensus 80 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~ 159 (329)
T d1uh5a_ 80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN 159 (329)
T ss_dssp GGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred cccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHh
Confidence 11111111111 235799999999965321 1 2344567899998888877654
Q ss_pred C--CCccEEEEecccccCCCCCCCcccccccCcCCCCCCCCChhHHHHHHHHHHHHH-----hhCCCCEEEEecCce
Q psy4557 447 N--KIKSFHYVSTDSIYPSTSENFQEDYTVADFDDFMTTTSGYGQSKIVSEYLVLNA-----GQMGLPVSIVRCGNI 516 (958)
Q Consensus 447 ~--~~k~~~~vST~~v~~~~~~~~~e~~~~~~~~~~~~~~~gY~~SK~~aE~lv~~a-----~~~glp~~I~R~g~i 516 (958)
. +..+++.+||.+..... + .....|+.||..-|.+++.. .++|++|..+.||.|
T Consensus 160 ~m~~~GsIv~iss~~~~~~~-------------p---~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i 220 (329)
T d1uh5a_ 160 IMKPQSSIISLTYHASQKVV-------------P---GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPL 220 (329)
T ss_dssp GEEEEEEEEEEECGGGTSCC-------------T---TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_pred hcccccccccceeehhcccc-------------c---ccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcc
Confidence 2 22468888876542110 0 12346999999999998752 235999999999977
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=97.63 E-value=6.1e-05 Score=73.87 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=58.3
Q ss_pred ccccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCC
Q psy4557 316 KLKYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEML 395 (958)
Q Consensus 316 ~~~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~l 395 (958)
..++++|+||||+|.+|..+.+.|++++ .+|++..|.... .+.+.+.+.. ..++.++..|++
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G-~~V~~~~r~~~~---~~~~~~~~~~----------~~~~~~~~~d~~---- 81 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRKLDK---AQAAADSVNK----------RFKVNVTAAETA---- 81 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHH---HHHHHHHHHH----------HHTCCCEEEECC----
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhc-cchhhcccchHH---HHHHHHHHHh----------ccchhhhhhhcc----
Confidence 3467899999999999999999998875 688888885321 1222222211 123445667765
Q ss_pred CCCcHHHHHHHhcccCEEEEcccc
Q psy4557 396 GLKNQDEYVSLSYEIDMIIHAAAF 419 (958)
Q Consensus 396 GL~~~~~~~~l~~~vd~IiH~AA~ 419 (958)
+.++......++|+|||||+.
T Consensus 82 ---~~~~~~~~~~~iDilin~Ag~ 102 (191)
T d1luaa1 82 ---DDASRAEAVKGAHFVFTAGAI 102 (191)
T ss_dssp ---SHHHHHHHTTTCSEEEECCCT
T ss_pred ---cHHHHHHHhcCcCeeeecCcc
Confidence 346777788899999999985
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=8.5e-05 Score=77.69 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=93.7
Q ss_pred EEEEcCCchHHHHHHHHHHHcCC-eEEEEecCh--hhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHH--HHcCC
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRI--DRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVL--AELGH 793 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~--~~~g~ 793 (958)
+|||||+|=||..++++|+++|. .|+++++-. .+...+ .+.. .+|..+.+ ....... ..+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~----~~~~------~~~~~~~~---~~~~~~~~~~~~~~ 68 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNL----VDLN------IADYMDKE---DFLIQIMAGEEFGD 68 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHH----HTSC------CSEEEEHH---HHHHHHHTTCCCSS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcc----cccc------hhhhccch---HHHHHHhhhhcccc
Confidence 79999999999999999999997 577764221 111111 1111 11222222 2333333 24567
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCC----------CCCC
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRP----------FAGL 863 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~----------~~~~ 863 (958)
.+++++.|+..... ..+ .+...+.|+.++..+...+...- ...|++.||.....+ .+..
T Consensus 69 ~~~i~~~aa~~~~~---~~~---~~~~~~~~~~~~~~~l~~~~~~~-----i~~v~~ss~~~~~~~~~~~~~~~~~~~~~ 137 (307)
T d1eq2a_ 69 VEAIFHEGACSSTT---EWD---GKYMMDNNYQYSKELLHYCLERE-----IPFLYASSAATYGGRTSDFIESREYEKPL 137 (307)
T ss_dssp CCEEEECCSCCCTT---CCC---HHHHHHHTHHHHHHHHHHHHHHT-----CCEEEEEEGGGGTTCCSCBCSSGGGCCCS
T ss_pred hhhhhhhccccccc---ccc---ccccccccccccccccccccccc-----ccccccccccccccccccccccccccccc
Confidence 88899988754322 122 24566777777777666554321 234444444432211 2345
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCcEEEEEECCcccCC
Q psy4557 864 AVYTGTKYFIEGISGALRQEVSDRNIKVTCIQAGDVKTE 902 (958)
Q Consensus 864 ~~Y~asKaa~~~l~~~la~el~~~gIrv~~v~PG~v~T~ 902 (958)
..|+.+|.+.+.+.+.++.+ .|+.+..+.|..+.-|
T Consensus 138 ~~Y~~~K~~~e~~~~~~~~~---~~~~~~~~r~~~vyGp 173 (307)
T d1eq2a_ 138 NVYGYSKFLFDEYVRQILPE---ANSQIVGFRYFNVYGP 173 (307)
T ss_dssp SHHHHHHHHHHHHHHHHGGG---CSSCEEEEEECEEESS
T ss_pred cccccccchhhhhccccccc---cccccccccceeEeec
Confidence 67999999999998877655 4677777777666544
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=97.52 E-value=0.00013 Score=71.33 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=59.3
Q ss_pred CCC-EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH-HcC
Q psy4557 715 ANK-VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA-ELG 792 (958)
Q Consensus 715 ~~k-~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~-~~g 792 (958)
.|+ +++++||++|+|.+.++-....|++||.+.|+.+..++..+.+.+.+....+ ..|-.+..+..+.++++.+ ..+
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi-~~~~~~~~~~~~~v~~~~~~~g~ 106 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVI-TEDQNNSREFGPTIKEWIKQSGG 106 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEE-EHHHHHCGGGHHHHHHHHHHHTC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEE-eccccchhHHHHHHHHHHhhccC
Confidence 455 4555799999999998888889999999999888777777666555543332 2221122233444455443 445
Q ss_pred CccEEEEcccc
Q psy4557 793 HIDILVNNAGV 803 (958)
Q Consensus 793 ~iDilInnAG~ 803 (958)
.+|+++++.|.
T Consensus 107 ~vdvv~D~vg~ 117 (189)
T d1gu7a2 107 EAKLALNCVGG 117 (189)
T ss_dssp CEEEEEESSCH
T ss_pred CceEEEECCCc
Confidence 79999999874
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=97.37 E-value=0.0003 Score=71.98 Aligned_cols=220 Identities=11% Similarity=0.031 Sum_probs=112.5
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
|.||||||+|-||..+.++|+++ +++|+...|...+. ..|+.... +.
T Consensus 2 kVvlITGas~GIG~aiA~~la~~-Ga~V~~~~~~~~~~-----------------------------~~d~~~~~-~~-- 48 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAA-GHQIVGIDIRDAEV-----------------------------IADLSTAE-GR-- 48 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSSSE-----------------------------ECCTTSHH-HH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECChHHH-----------------------------HHHhcCHH-HH--
Confidence 56899999999999999999876 46777766643211 01221100 00
Q ss_pred HHHHHH----HhcccCEEEEcccccCcccChHHHHhhhHHHHHHHHHhhc----cCCCccEEEEecccccCCCC--CCCc
Q psy4557 400 QDEYVS----LSYEIDMIIHAAAFVNLILPYNALYKSNVLATKNLIEFSF----LNKIKSFHYVSTDSIYPSTS--ENFQ 469 (958)
Q Consensus 400 ~~~~~~----l~~~vd~IiH~AA~v~~~~~~~~~~~~NV~gt~~ll~~a~----~~~~k~~~~vST~~v~~~~~--~~~~ 469 (958)
...+.. ....+|.++|+|+.......+......|..|..++.+... .........+++........ ....
T Consensus 49 ~~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d1fjha_ 49 KQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLA 128 (257)
T ss_dssp HHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTH
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhh
Confidence 000111 1246899999998765555566666778888777765432 23333445555432221100 0000
Q ss_pred c------cc---cccCcCCCCCCCCChhHHHHHHHHHHHHH----hhCCCCEEEEecCceeccCCCCCcChhHHHHHHHH
Q psy4557 470 E------DY---TVADFDDFMTTTSGYGQSKIVSEYLVLNA----GQMGLPVSIVRCGNIGGSLEFKNWNLVDLNLYILK 536 (958)
Q Consensus 470 e------~~---~~~~~~~~~~~~~gY~~SK~~aE~lv~~a----~~~glp~~I~R~g~i~G~~~~g~~n~~d~~~~l~~ 536 (958)
. .. ..............|+.||..-+.+.+.. ..+|+++..+.||.|-.+.....+...++...+.+
T Consensus 129 ~~~~~g~~~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~ 208 (257)
T d1fjha_ 129 LALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAK 208 (257)
T ss_dssp HHHHHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------
T ss_pred hhccCCcEEEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHHHHHh
Confidence 0 00 00000000001225999999999998763 35699999999999854432222221111111111
Q ss_pred HHHHhCCcCCCCCcCCcccHHHHHHHHHHHhcCcC--CCCceEEecC
Q psy4557 537 AITRLGYAPDIDWYLEFTPVDFLTKSLVQLTTNVN--NANKIYNFIN 581 (958)
Q Consensus 537 ~~~~~g~~P~~~~~~~~~pVD~va~aiv~l~~~~~--~~~~v~h~~n 581 (958)
...|-. -+.-.+.+|++++.|+.... -.|.+.++..
T Consensus 209 -----~~~Plg----R~g~p~eva~~v~fL~S~~s~~itG~~i~vDG 246 (257)
T d1fjha_ 209 -----FVPPMG----RRAEPSEMASVIAFLMSPAASYVHGAQIVIDG 246 (257)
T ss_dssp -----CCCSTT----SCCCTHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred -----cCCCCC----CCcCHHHHHHHHHHHhCchhCCccCceEEeCC
Confidence 112211 13345889999999875432 3566776653
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.36 E-value=0.00013 Score=70.24 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
-+|++++|+||+||.|....+-....|++|+.++++.++.+.+.+ + +....+ |-++ ...+.+..+ .-++
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~-l---Ga~~vi---~~~~--~~~~~~~~~--~~~g 98 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-L---GAKEVL---ARED--VMAERIRPL--DKQR 98 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-T---TCSEEE---ECC-----------C--CSCC
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh-c---ccceee---ecch--hHHHHHHHh--hccC
Confidence 368899999999999999988888899999999999888776543 2 333222 2221 111111111 2357
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcCCC
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVRPF 860 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~~~ 860 (958)
+|+++++.|... ....+..|. .+|+||.+++..+..+.
T Consensus 99 vD~vid~vgg~~--------------------------~~~~l~~l~---~~Griv~~G~~~g~~~~ 136 (176)
T d1xa0a2 99 WAAAVDPVGGRT--------------------------LATVLSRMR---YGGAVAVSGLTGGAEVP 136 (176)
T ss_dssp EEEEEECSTTTT--------------------------HHHHHHTEE---EEEEEEECSCCSSSCCC
T ss_pred cCEEEEcCCchh--------------------------HHHHHHHhC---CCceEEEeecccCcccC
Confidence 999999998531 112334443 46999999998776643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.34 E-value=0.00071 Score=64.47 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC-C
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG-H 793 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g-~ 793 (958)
.|.+++|+| +++||...++.+...|++|++++++.++++.+++ + +.... +..|-. .++.....+.+.+..| .
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~-~---ga~~~-~~~~~~-~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN-C---GADVT-LVVDPA-KEEESSIIERIRSAIGDL 98 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-T---TCSEE-EECCTT-TSCHHHHHHHHHHHSSSC
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHH-c---CCcEE-Eecccc-ccccchhhhhhhcccccC
Confidence 577899997 5799999999998999999999999998876553 2 22222 222322 2334455566666554 5
Q ss_pred ccEEEEcccc
Q psy4557 794 IDILVNNAGV 803 (958)
Q Consensus 794 iDilInnAG~ 803 (958)
+|++|.++|.
T Consensus 99 ~D~vid~~g~ 108 (170)
T d1e3ja2 99 PNVTIDCSGN 108 (170)
T ss_dssp CSEEEECSCC
T ss_pred CceeeecCCC
Confidence 9999999986
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.18 E-value=0.00058 Score=66.02 Aligned_cols=105 Identities=16% Similarity=0.223 Sum_probs=70.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
+|++++|+||++|+|.+.++-....|++||.++|+.++.+.+++ .+....+ |-.+++..+...+.. ..+.+
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~----~Ga~~vi---~~~~~~~~~~~~~~~--~~~Gv 99 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGFDAAF---NYKTVNSLEEALKKA--SPDGY 99 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCSEEE---ETTSCSCHHHHHHHH--CTTCE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh----hhhhhhc---ccccccHHHHHHHHh--hcCCC
Confidence 69999999999999999999999999999999999887765543 2333322 333333333222221 23469
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV 857 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~ 857 (958)
|+++++.|.. ..+..+..+ +..|+++.++...+.
T Consensus 100 d~v~D~vG~~--------------------------~~~~~~~~l---~~~G~~v~~G~~~~~ 133 (182)
T d1v3va2 100 DCYFDNVGGE--------------------------FLNTVLSQM---KDFGKIAICGAISVY 133 (182)
T ss_dssp EEEEESSCHH--------------------------HHHHHGGGE---EEEEEEEECCCGGGT
T ss_pred ceeEEecCch--------------------------hhhhhhhhc---cCCCeEEeecceeec
Confidence 9999999841 122233434 346999999876654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.13 E-value=0.00059 Score=65.86 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc--C
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL--G 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~--g 792 (958)
+|++++|+||++|+|...++.+...|++|+++.++.++.+.++ +.+... + .|-.+++ + .+++.+.. .
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~----~~Ga~~-v--i~~~~~~-~---~~~v~~~t~~~ 93 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS----RLGVEY-V--GDSRSVD-F---ADEILELTDGY 93 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----TTCCSE-E--EETTCST-H---HHHHHHHTTTC
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccccc----cccccc-c--ccCCccC-H---HHHHHHHhCCC
Confidence 5789999999999999999988889999999999987765443 333332 2 2444432 2 23444432 3
Q ss_pred CccEEEEccc
Q psy4557 793 HIDILVNNAG 802 (958)
Q Consensus 793 ~iDilInnAG 802 (958)
.+|+++.+.|
T Consensus 94 g~d~v~d~~g 103 (183)
T d1pqwa_ 94 GVDVVLNSLA 103 (183)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEeccc
Confidence 5999999998
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.0014 Score=63.29 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=62.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHH---HhhcCCCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKT---SLQNAPGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~---~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
..++||.|+|.|+ ||.|++++..|++.|+ +++++.|+.++++++.. .+.... .......|+.+.+++....
T Consensus 14 ~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 88 (182)
T d1vi2a1 14 FDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQAFAEAL--- 88 (182)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHH---
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhc-CcceEeeecccccchhhhh---
Confidence 3579999999999 6999999999999997 68889998776665543 343322 2335567888876654332
Q ss_pred HHHcCCccEEEEccccC
Q psy4557 788 LAELGHIDILVNNAGVM 804 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~ 804 (958)
...|++||+....
T Consensus 89 ----~~~diiIN~Tp~G 101 (182)
T d1vi2a1 89 ----ASADILTNGTKVG 101 (182)
T ss_dssp ----HTCSEEEECSSTT
T ss_pred ----cccceeccccCCc
Confidence 3679999998654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.98 E-value=0.0015 Score=62.39 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=60.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
..++||.++|-|+ ||-|++++..|.+.+.+|+++.|+.++++++.+.+.... .+.....|-. ..
T Consensus 14 ~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~-~~~~~~~~~~--------------~~ 77 (171)
T d1p77a1 14 WLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG-NIQAVSMDSI--------------PL 77 (171)
T ss_dssp CCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS-CEEEEEGGGC--------------CC
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc-ccchhhhccc--------------cc
Confidence 4578999999876 788999999999988999999999999999998886543 3444443321 23
Q ss_pred CCccEEEEccccCCC
Q psy4557 792 GHIDILVNNAGVMYF 806 (958)
Q Consensus 792 g~iDilInnAG~~~~ 806 (958)
...|++||+......
T Consensus 78 ~~~diiIN~tp~g~~ 92 (171)
T d1p77a1 78 QTYDLVINATSAGLS 92 (171)
T ss_dssp SCCSEEEECCCC---
T ss_pred cccceeeeccccccc
Confidence 578999999876543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.96 E-value=0.0015 Score=62.95 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc--
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL-- 791 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-- 791 (958)
.|.+++|+|+ ||||...++.+...|+ +|++++++.++++.++ ++ +... + .|..+. +..+..+++.+..
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~-~l---Ga~~-v--i~~~~~-~~~~~~~~i~~~~~~ 98 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EI---GADL-T--LNRRET-SVEERRKAIMDITHG 98 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HT---TCSE-E--EETTTS-CHHHHHHHHHHHTTT
T ss_pred CCCEEEEECC-Cccchhheecccccccccccccccccccccccc-cc---cceE-E--Eecccc-chHHHHHHHHHhhCC
Confidence 6889999997 7999999999999998 7999999998886543 33 2222 2 243322 2333344444433
Q ss_pred CCccEEEEccccC
Q psy4557 792 GHIDILVNNAGVM 804 (958)
Q Consensus 792 g~iDilInnAG~~ 804 (958)
..+|++|.++|..
T Consensus 99 ~g~Dvvid~vG~~ 111 (182)
T d1vj0a2 99 RGADFILEATGDS 111 (182)
T ss_dssp SCEEEEEECSSCT
T ss_pred CCceEEeecCCch
Confidence 2499999999873
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.0012 Score=63.24 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH--cC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE--LG 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~--~g 792 (958)
+|++++|+||++|+|...++.....|++|+++.++.++++.++ ++ +.... +|.++.+-. +++.+. -.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~-~~---Ga~~v---i~~~~~~~~----~~i~~~t~~~ 96 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QN---GAHEV---FNHREVNYI----DKIKKYVGEK 96 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HT---TCSEE---EETTSTTHH----HHHHHHHCTT
T ss_pred CCCEEEEEeccccccccccccccccCccccccccccccccccc-cc---Ccccc---cccccccHH----HHhhhhhccC
Confidence 6889999999999999999988889999999999887766554 23 32222 365554332 333332 23
Q ss_pred CccEEEEcccc
Q psy4557 793 HIDILVNNAGV 803 (958)
Q Consensus 793 ~iDilInnAG~ 803 (958)
.+|+++.+.|.
T Consensus 97 g~d~v~d~~g~ 107 (174)
T d1yb5a2 97 GIDIIIEMLAN 107 (174)
T ss_dssp CEEEEEESCHH
T ss_pred CceEEeecccH
Confidence 59999998773
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.95 E-value=0.0015 Score=61.55 Aligned_cols=75 Identities=24% Similarity=0.441 Sum_probs=57.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..+++|.++|.|+ |++|..+++.|...|+ ++.++.|+.++.+++..++. .+. .+ .+++. +.
T Consensus 20 ~~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~---~~~----~~---~~~~~-------~~ 81 (159)
T d1gpja2 20 GSLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG---GEA----VR---FDELV-------DH 81 (159)
T ss_dssp SCCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT---CEE----CC---GGGHH-------HH
T ss_pred CCcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh---ccc----cc---chhHH-------HH
Confidence 3689999999998 9999999999999998 69999999999988887763 222 12 22222 22
Q ss_pred cCCccEEEEccccC
Q psy4557 791 LGHIDILVNNAGVM 804 (958)
Q Consensus 791 ~g~iDilInnAG~~ 804 (958)
....|++|++.+..
T Consensus 82 l~~~Divi~atss~ 95 (159)
T d1gpja2 82 LARSDVVVSATAAP 95 (159)
T ss_dssp HHTCSEEEECCSSS
T ss_pred hccCCEEEEecCCC
Confidence 23689999998864
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.0012 Score=63.06 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=59.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
-.++||.++|-|+ ||-+++++..|.+.|++|+++.|+.++.+++.+.+.... .+... +..+. ..
T Consensus 14 ~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~-~~~~~--~~~~~------------~~ 77 (170)
T d1nyta1 14 FIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG-SIQAL--SMDEL------------EG 77 (170)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS-SEEEC--CSGGG------------TT
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc-ccccc--ccccc------------cc
Confidence 4578999999997 888999999999999999999999999999988876543 23222 22111 12
Q ss_pred CCccEEEEccccC
Q psy4557 792 GHIDILVNNAGVM 804 (958)
Q Consensus 792 g~iDilInnAG~~ 804 (958)
.+.|++||+....
T Consensus 78 ~~~dliIN~Tp~G 90 (170)
T d1nyta1 78 HEFDLIINATSSG 90 (170)
T ss_dssp CCCSEEEECCSCG
T ss_pred cccceeecccccC
Confidence 4689999998554
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0071 Score=57.28 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC-
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG- 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g- 792 (958)
.|.+++|.|+ +++|...++.+...|+ +|++++++.++++-++ ++ +... ++..+-.+. ....+.+...+|
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~~---Ga~~-~~~~~~~~~---~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EI---GADL-VLQISKESP---QEIARKVEGQLGC 96 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT---TCSE-EEECSSCCH---HHHHHHHHHHHTS
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-Hh---CCcc-ccccccccc---ccccccccccCCC
Confidence 5778999986 9999999999999999 7999999998887544 33 2222 222232333 333444444444
Q ss_pred CccEEEEcccc
Q psy4557 793 HIDILVNNAGV 803 (958)
Q Consensus 793 ~iDilInnAG~ 803 (958)
.+|++|.++|.
T Consensus 97 g~Dvvid~~G~ 107 (171)
T d1pl8a2 97 KPEVTIECTGA 107 (171)
T ss_dssp CCSEEEECSCC
T ss_pred CceEEEeccCC
Confidence 69999999996
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.0015 Score=62.63 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.|++++|+||++|+|...++-....|++|+++.++.++.+.+++ + +... + .|-++++-.++ +.++. ....+
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~-l---Ga~~-v--i~~~~~d~~~~-v~~~t-~g~g~ 98 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A---GAWQ-V--INYREEDLVER-LKEIT-GGKKV 98 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H---TCSE-E--EETTTSCHHHH-HHHHT-TTCCE
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh-c---CCeE-E--EECCCCCHHHH-HHHHh-CCCCe
Confidence 58899999999999999999999999999999999998876653 3 2222 2 36555433332 22222 23468
Q ss_pred cEEEEcccc
Q psy4557 795 DILVNNAGV 803 (958)
Q Consensus 795 DilInnAG~ 803 (958)
|++++++|.
T Consensus 99 d~v~d~~g~ 107 (179)
T d1qora2 99 RVVYDSVGR 107 (179)
T ss_dssp EEEEECSCG
T ss_pred EEEEeCccH
Confidence 999999875
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.0012 Score=53.82 Aligned_cols=44 Identities=43% Similarity=0.528 Sum_probs=38.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKT 758 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~ 758 (958)
+++.++|+||++|.|....+.+...|++|+.+.++.++.+-+++
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence 67789999999999999999888899999999999888776543
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.62 E-value=0.0021 Score=61.11 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
++|.++|.|| |.+|+.+|+.|+++|++|+++.|+.++++++.+.+ ........+..........+ ...
T Consensus 1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~----~~~~~~~~~~~~~~~~~~~i-------~~~ 68 (182)
T d1e5qa1 1 ATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV----QHSTPISLDVNDDAALDAEV-------AKH 68 (182)
T ss_dssp CCCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC----TTEEEEECCTTCHHHHHHHH-------TTS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc----cccccccccccchhhhHhhh-------hcc
Confidence 4789999887 99999999999999999999999999988877543 33444455665554443332 245
Q ss_pred cEEEEccc
Q psy4557 795 DILVNNAG 802 (958)
Q Consensus 795 DilInnAG 802 (958)
|.+|....
T Consensus 69 ~~~i~~~~ 76 (182)
T d1e5qa1 69 DLVISLIP 76 (182)
T ss_dssp SEEEECSC
T ss_pred ceeEeecc
Confidence 66665543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.46 E-value=0.0043 Score=58.95 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
+|++++|+||++|+|...++.....|++|+.+.++.++++.+++ + +.... .|..+ . .+++. ..+.+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~-l---Ga~~~---i~~~~--~----~~~~~-~~~g~ 92 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-L---GAEEA---ATYAE--V----PERAK-AWGGL 92 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-T---TCSEE---EEGGG--H----HHHHH-HTTSE
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc-c---cccee---eehhh--h----hhhhh-ccccc
Confidence 78999999999999999999888899999999999888776543 2 32222 23322 1 12222 34569
Q ss_pred cEEEEccc
Q psy4557 795 DILVNNAG 802 (958)
Q Consensus 795 DilInnAG 802 (958)
|+++++.|
T Consensus 93 D~v~d~~G 100 (171)
T d1iz0a2 93 DLVLEVRG 100 (171)
T ss_dssp EEEEECSC
T ss_pred cccccccc
Confidence 99999877
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0066 Score=60.21 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=56.6
Q ss_pred CCCCCCEEEEEcC----------------CchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCC
Q psy4557 712 NTLANKVIFVTGS----------------SSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVT 775 (958)
Q Consensus 712 ~~l~~k~~lITGa----------------s~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs 775 (958)
++|+||.+|||+| ||-.|+++|+++.++||.|.++..... . .....+..+ .+.
T Consensus 2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~--------~-~~p~~~~~~--~~~ 70 (223)
T d1u7za_ 2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS--------L-PTPPFVKRV--DVM 70 (223)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC--------C-CCCTTEEEE--ECC
T ss_pred cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccc--------c-Ccccccccc--eeh
Confidence 6799999999975 567899999999999999999865432 0 112223332 444
Q ss_pred CHHHHHHHHHHHHHHcCCccEEEEccccCCC
Q psy4557 776 IENDVKKVVREVLAELGHIDILVNNAGVMYF 806 (958)
Q Consensus 776 ~~~~v~~~~~~~~~~~g~iDilInnAG~~~~ 806 (958)
..++. .+.+.+.+...|++|.+|.+...
T Consensus 71 t~~~m---~~~~~~~~~~~D~~i~aAAvsDf 98 (223)
T d1u7za_ 71 TALEM---EAAVNASVQQQNIFIGCAAVADY 98 (223)
T ss_dssp SHHHH---HHHHHHHGGGCSEEEECCBCCSE
T ss_pred hhHHH---HHHHHhhhccceeEeeeechhhh
Confidence 44444 44444555667999999998754
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.14 E-value=0.031 Score=51.26 Aligned_cols=113 Identities=16% Similarity=0.198 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcC--CeEEEEecChhhHHHHHHHhhc---CCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRIDRLENLKTSLQN---APGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~~~l~~~~~~l~~---~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+.+.+.|.|+ |.+|..+|..|+.+| ..|+++++++++++....++.. ..........| .+
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d---~~----------- 68 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE---YS----------- 68 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC---GG-----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeecc---HH-----------
Confidence 4557778896 889999999999998 5799999999887766555532 12222333333 21
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEec
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNIS 852 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~is 852 (958)
....-|++|..||...... .+ -...+..|. .+++...+.+.+...++.++++|
T Consensus 69 ~~~~adivvitag~~~~~g---~~---r~~l~~~N~----~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 69 DCKDADLVVITAGAPQKPG---ES---RLDLVNKNL----NILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp GGTTCSEEEECCCC----------------CHHHHH----HHHHHHHHHHHHTTCCSEEEECS
T ss_pred HhccccEEEEecccccCCC---CC---HHHHHHHHH----HHHHHHHHHHhhcCCCcEEEEeC
Confidence 2345699999999754321 11 123334443 45666777777667778888877
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.95 E-value=0.011 Score=55.88 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=40.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHh
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSL 760 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l 760 (958)
++|.++|.|+ ||-|++++..|.+.|+ +|.++.|+.++.+++++.+
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~ 61 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 61 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence 6788999987 8999999999999997 7999999999998888765
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.83 E-value=0.0096 Score=53.74 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=55.5
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
.++|.|+ |-+|+.+|+.|.++|+.|+++.+++++++++.+++ ...++..|.++++..+++ .....|.+
T Consensus 2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~------~i~~a~~v 69 (132)
T d1lssa_ 2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDA------GIEDADMY 69 (132)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHT------TTTTCSEE
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhc------Chhhhhhh
Confidence 5788897 99999999999999999999999999988876543 244677899998765433 22456777
Q ss_pred EEc
Q psy4557 798 VNN 800 (958)
Q Consensus 798 Inn 800 (958)
|..
T Consensus 70 v~~ 72 (132)
T d1lssa_ 70 IAV 72 (132)
T ss_dssp EEC
T ss_pred ccc
Confidence 654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.81 E-value=0.012 Score=55.48 Aligned_cols=80 Identities=18% Similarity=0.347 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.|.+++|+|+++|+|..+++.+...|+ +|++++++.++++.+++ + +... + .|-++++..++..+.. .-+.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~-~---Ga~~-~--i~~~~~~~~~~~~~~~--~~~~ 97 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-A---GADY-V--INASMQDPLAEIRRIT--ESKG 97 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-H---TCSE-E--EETTTSCHHHHHHHHT--TTSC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH-c---CCce-e--eccCCcCHHHHHHHHh--hccc
Confidence 678999999999999999999999995 88889999888776653 2 2222 2 2444443333332221 1235
Q ss_pred ccEEEEcccc
Q psy4557 794 IDILVNNAGV 803 (958)
Q Consensus 794 iDilInnAG~ 803 (958)
+|++|.++|.
T Consensus 98 ~d~vid~~g~ 107 (170)
T d1jvba2 98 VDAVIDLNNS 107 (170)
T ss_dssp EEEEEESCCC
T ss_pred chhhhccccc
Confidence 9999999986
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.70 E-value=0.0095 Score=57.32 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=63.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEE-EecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVA-VARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~-~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
+++|+|+||+||+|...++-....|+++++ ++++.++..++..++.. ... .|..+++ ..+.++++. ...+
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga---d~v---i~~~~~~-~~~~~~~~~--~~Gv 101 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF---DAA---VNYKTGN-VAEQLREAC--PGGV 101 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC---SEE---EETTSSC-HHHHHHHHC--TTCE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc---eEE---eeccchh-HHHHHHHHh--ccCc
Confidence 489999999999999998887779997555 56777777766665532 222 3554433 333344433 2359
Q ss_pred cEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCc
Q psy4557 795 DILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGV 857 (958)
Q Consensus 795 DilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~ 857 (958)
|+++.+.|.. . .+..+..+ +..|+++.++++++.
T Consensus 102 Dvv~D~vGg~-----------~---------------~~~~~~~l---~~~G~iv~~G~~s~~ 135 (187)
T d1vj1a2 102 DVYFDNVGGD-----------I---------------SNTVISQM---NENSHIILCGQISQY 135 (187)
T ss_dssp EEEEESSCHH-----------H---------------HHHHHTTE---EEEEEEEEC------
T ss_pred eEEEecCCch-----------h---------------HHHHhhhc---cccccEEEecccccc
Confidence 9999999831 1 12233333 356999999887764
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.64 E-value=0.0048 Score=58.39 Aligned_cols=102 Identities=21% Similarity=0.253 Sum_probs=67.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH--HcC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA--ELG 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~--~~g 792 (958)
++++|||+||++|+|...++-....|++|+.++++.++.+.+++. +..... | .+ +...+... .-+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad~vi---~---~~---~~~~~~~~~~~~~ 89 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GASEVI---S---RE---DVYDGTLKALSKQ 89 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCSEEE---E---HH---HHCSSCCCSSCCC
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----cccceE---e---cc---chhchhhhcccCC
Confidence 466899999999999999988788899999999999888776543 222221 1 11 11111111 224
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCccCcC
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSNAGVR 858 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~~g~~ 858 (958)
++|+++.+.|.. .....+..+ +..|+||.++...+..
T Consensus 90 gvd~vid~vgg~--------------------------~~~~~~~~l---~~~G~iv~~G~~~g~~ 126 (167)
T d1tt7a2 90 QWQGAVDPVGGK--------------------------QLASLLSKI---QYGGSVAVSGLTGGGE 126 (167)
T ss_dssp CEEEEEESCCTH--------------------------HHHHHHTTE---EEEEEEEECCCSSCSC
T ss_pred CceEEEecCcHH--------------------------HHHHHHHHh---ccCceEEEeeccCCCc
Confidence 699999998752 112233333 3469999999887754
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.0072 Score=57.70 Aligned_cols=43 Identities=44% Similarity=0.529 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLK 757 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~ 757 (958)
++++++|+||+||+|...++-....|++|+.++|+.++.+.++
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~ 73 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK 73 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHH
Confidence 5568999999999999998888889999999999999877664
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.50 E-value=0.052 Score=49.50 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=69.1
Q ss_pred ceEEeccccchHHHHHHHHhcCCCC-eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceE-EecccCCCCCCCCC
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLI-LVKSDLSLEMLGLK 398 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~-~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~-~v~gDl~~~~lGL~ 398 (958)
+|.|.||+|.+|+++...|..++-. ++..+... . ..+ ...+ ..+. ..+ .... ++.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~-~-~~~--~a~D---l~~~----~~~-~~~~~~~~~---------- 59 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA-H-TPG--VAAD---LSHI----ETR-ATVKGYLGP---------- 59 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS-S-HHH--HHHH---HTTS----SSS-CEEEEEESG----------
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecc-c-cch--hhHH---Hhhh----hhh-cCCCeEEcC----------
Confidence 5889999999999999887766554 44444332 1 111 1111 1110 001 1111 1111
Q ss_pred cHHHHHHHhcccCEEEEcccccC-cccChHHHHhhhHHHHHHHHHhhccCCCccEEEEec
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVN-LILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVST 457 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~-~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST 457 (958)
..+.....++|+|+-.|+... ...++.++...|+.-.+++++.+.+...+.++.+-|
T Consensus 60 --~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 60 --EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp --GGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred --CChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 233445578999999998643 345677888999999999998877766666666554
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.20 E-value=0.032 Score=52.35 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.|++++|.|+ +|+|...++.+...|++|++++++.++++.+++ + +... ++ |-.+.... .....+.+
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~-l---Ga~~-~i--~~~~~~~~------~~~~~~~~ 92 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-M---GADH-YI--ATLEEGDW------GEKYFDTF 92 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H---TCSE-EE--EGGGTSCH------HHHSCSCE
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhhc-c---CCcE-Ee--eccchHHH------HHhhhccc
Confidence 6889999987 899999888777889999999999998876543 3 2222 22 22211111 12234578
Q ss_pred cEEEEccccCC
Q psy4557 795 DILVNNAGVMY 805 (958)
Q Consensus 795 DilInnAG~~~ 805 (958)
|.+|.+.|...
T Consensus 93 d~vi~~~~~~~ 103 (168)
T d1piwa2 93 DLIVVCASSLT 103 (168)
T ss_dssp EEEEECCSCST
T ss_pred ceEEEEecCCc
Confidence 99999988653
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.04 E-value=0.16 Score=46.26 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhhcC----CCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNA----PGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
.++.+.|.|| |.+|..+|..|+.+|. .++++++++++++....++... .....+...| .+
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d---~~---------- 70 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD---YD---------- 70 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC---GG----------
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECC---HH----------
Confidence 4556777797 8899999999999984 6999999998877666555421 1222232222 21
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSN 854 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~ 854 (958)
....-|++|..||....... ...+ .+..| .-+++...+.+.+..+.+.++++|--
T Consensus 71 -~l~daDvvvitag~~~~~~~--~R~d----l~~~N----~~i~~~i~~~i~~~~p~a~~ivvtNP 125 (148)
T d1ldna1 71 -DCRDADLVVICAGANQKPGE--TRLD----LVDKN----IAIFRSIVESVMASGFQGLFLVATNP 125 (148)
T ss_dssp -GTTTCSEEEECCSCCCCTTT--CSGG----GHHHH----HHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred -HhccceeEEEecccccccCc--chhH----HHHHH----HHHHHHHHHHHHhhCCCceEEEecCc
Confidence 23456999999998643221 1122 22333 34556667776666677888887743
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.98 E-value=0.021 Score=54.00 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=55.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCC-HHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI-ENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~ 791 (958)
-.|.+++|.|+ +|+|...+..++..|+ +|+++++++++++..++ + +....+ |-.+ ++.+.+..+.. ..
T Consensus 27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~-~---Ga~~~i---~~~~~~~~~~~~~~~~--~~ 96 (176)
T d2jhfa2 27 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE-V---GATECV---NPQDYKKPIQEVLTEM--SN 96 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-T---TCSEEE---CGGGCSSCHHHHHHHH--TT
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH-h---CCeeEE---ecCCchhHHHHHHHHH--hc
Confidence 37899999999 6899999999999985 78888999988775543 2 222222 2211 22233333333 23
Q ss_pred CCccEEEEccccC
Q psy4557 792 GHIDILVNNAGVM 804 (958)
Q Consensus 792 g~iDilInnAG~~ 804 (958)
+.+|++|.+.|..
T Consensus 97 ~G~D~vid~~G~~ 109 (176)
T d2jhfa2 97 GGVDFSFEVIGRL 109 (176)
T ss_dssp SCBSEEEECSCCH
T ss_pred CCCCEEEecCCch
Confidence 5799999999873
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.82 E-value=0.021 Score=54.16 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc--
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAEL-- 791 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-- 791 (958)
+|.+++|.|+ +|||...++.+...|+ +|++++++.++++.+. ++. .. .+ +|..+++.. +++.+..
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~lG---a~-~~--i~~~~~~~~----~~v~~~t~g 94 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-FYG---AT-DI--LNYKNGHIE----DQVMKLTNG 94 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-HHT---CS-EE--ECGGGSCHH----HHHHHHTTT
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHH-hhC---cc-cc--ccccchhHH----HHHHHHhhc
Confidence 6778999986 8999999998888998 6999999988876554 332 11 12 344443222 3333332
Q ss_pred CCccEEEEccccC
Q psy4557 792 GHIDILVNNAGVM 804 (958)
Q Consensus 792 g~iDilInnAG~~ 804 (958)
..+|++|.++|..
T Consensus 95 ~G~D~vid~~g~~ 107 (174)
T d1jqba2 95 KGVDRVIMAGGGS 107 (174)
T ss_dssp SCEEEEEECSSCT
T ss_pred cCcceEEEccCCH
Confidence 2499999999963
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.038 Score=51.76 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.|++++|.|+ +|||...++.+...|+++++++++.++++.+ +++. ... + +|..+.+.. ....+.+
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a-~~lG---ad~-~--i~~~~~~~~-------~~~~~~~ 94 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAA-KALG---ADE-V--VNSRNADEM-------AAHLKSF 94 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHT---CSE-E--EETTCHHHH-------HTTTTCE
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHH-hccC---CcE-E--EECchhhHH-------HHhcCCC
Confidence 6889999986 8999999988888999999999998887644 3442 222 1 355554432 2223579
Q ss_pred cEEEEccccC
Q psy4557 795 DILVNNAGVM 804 (958)
Q Consensus 795 DilInnAG~~ 804 (958)
|++|.++|..
T Consensus 95 D~vid~~g~~ 104 (168)
T d1uufa2 95 DFILNTVAAP 104 (168)
T ss_dssp EEEEECCSSC
T ss_pred ceeeeeeecc
Confidence 9999999863
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.67 E-value=0.03 Score=53.12 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
-.|.+++|+|+ +|+|...++.+...|+ +|++++++.++++-.+ ++. ....+ |-.+.+...+.+.+.. ..+
T Consensus 28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak-~~G---A~~~i---n~~~~~~~~~~~~~~~-~g~ 98 (176)
T d1d1ta2 28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM-AVG---ATECI---SPKDSTKPISEVLSEM-TGN 98 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HHT---CSEEE---CGGGCSSCHHHHHHHH-HTS
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHH-hcC---CcEEE---CccccchHHHHHHHHh-ccc
Confidence 36889999986 8999999999999995 7999999999988544 332 22222 3222222122222222 234
Q ss_pred CccEEEEccccC
Q psy4557 793 HIDILVNNAGVM 804 (958)
Q Consensus 793 ~iDilInnAG~~ 804 (958)
.+|++|.+.|..
T Consensus 99 G~d~vi~~~g~~ 110 (176)
T d1d1ta2 99 NVGYTFEVIGHL 110 (176)
T ss_dssp CCCEEEECSCCH
T ss_pred cceEEEEeCCch
Confidence 699999999863
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.62 E-value=0.032 Score=52.72 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEE-EEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVV-AVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi-~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
-.|.+++|.|+ +|||...++.+...|++++ ++++++++++.+++ +. . ..+ .|..+++ +.+.++++. -+
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~-~G---a-~~~--i~~~~~~-~~~~i~~~t--~g 95 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ-LG---A-THV--INSKTQD-PVAAIKEIT--DG 95 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH-HT---C-SEE--EETTTSC-HHHHHHHHT--TS
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHH-cC---C-eEE--EeCCCcC-HHHHHHHHc--CC
Confidence 36889999987 8999999998888998655 55777777766543 32 1 122 3444433 333333332 25
Q ss_pred CccEEEEcccc
Q psy4557 793 HIDILVNNAGV 803 (958)
Q Consensus 793 ~iDilInnAG~ 803 (958)
.+|++|.|+|.
T Consensus 96 g~D~vid~~G~ 106 (174)
T d1f8fa2 96 GVNFALESTGS 106 (174)
T ss_dssp CEEEEEECSCC
T ss_pred CCcEEEEcCCc
Confidence 79999999996
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.59 E-value=0.18 Score=46.49 Aligned_cols=115 Identities=18% Similarity=0.263 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhhcC----CCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNA----PGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
+...+.|.|+ |.+|..+|..|+.+|. .+++++++.++++....++... +........|. +
T Consensus 18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~---~---------- 83 (159)
T d2ldxa1 18 SRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY---N---------- 83 (159)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG---G----------
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch---h----------
Confidence 3335666686 8999999999999984 7999999988877666666432 12222222232 1
Q ss_pred HHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Q psy4557 789 AELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSN 854 (958)
Q Consensus 789 ~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~ 854 (958)
....-|++|..||..........+. ++.| ..+.+...+.+.+....|.++++|--
T Consensus 84 -~~~~adivvitag~~~~~~~~R~dl------l~~N----~~i~~~i~~~i~~~~p~~ivivvtNP 138 (159)
T d2ldxa1 84 -VSANSKLVIITAGARMVSGQTRLDL------LQRN----VAIMKAIVPGVIQNSPDCKIIVVTNP 138 (159)
T ss_dssp -GGTTEEEEEECCSCCCCTTTCSSCT------THHH----HHHHHHHTTTHHHHSTTCEEEECSSS
T ss_pred -hhccccEEEEecccccCCCCCHHHH------HHHH----HHHHHHHHHHHhccCCCeEEEEeCCc
Confidence 2346799999999865432222221 2222 34466667777666677888888853
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=94.58 E-value=0.038 Score=50.37 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=66.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhhcC---CCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNA---PGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.|+++| |+ |.+|..+|..++.+|. .+++++++.++++....++... ......... +.+ .
T Consensus 2 ~KI~II-Ga-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~~-----------~ 65 (142)
T d1y6ja1 2 SKVAII-GA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG---DYS-----------D 65 (142)
T ss_dssp CCEEEE-CC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CGG-----------G
T ss_pred CeEEEE-CC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC---cHH-----------H
Confidence 455555 86 9999999999999984 7999999988766665566432 122222111 111 2
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecC
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISS 853 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS 853 (958)
...-|++|..||..... ..+. ...+..|. .+++...+.+.+..+.+.++++|-
T Consensus 66 ~~~adivvitag~~~~~---~~~r---~~l~~~N~----~i~~~i~~~i~~~~p~ai~ivvtN 118 (142)
T d1y6ja1 66 VKDCDVIVVTAGANRKP---GETR---LDLAKKNV----MIAKEVTQNIMKYYNHGVILVVSN 118 (142)
T ss_dssp GTTCSEEEECCCC---------CH---HHHHHHHH----HHHHHHHHHHHHHCCSCEEEECSS
T ss_pred hCCCceEEEecccccCc---Ccch---hHHhhHHH----HHHHHHHHHhhccCCCceEEEecC
Confidence 34569999999976321 1122 23344443 456667777766666788888774
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.55 E-value=0.17 Score=45.89 Aligned_cols=116 Identities=18% Similarity=0.112 Sum_probs=69.3
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHID 795 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 795 (958)
.+.|+||+|.+|.++|..|+.+|. .+++++.+..+.+. .++....... ....-+. ..+.. +....-|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a--~Dl~~~~~~~-~~~~~~~-~~~~~-------~~~~~aD 70 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA--ADLSHIETRA-TVKGYLG-PEQLP-------DCLKGCD 70 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH--HHHTTSSSSC-EEEEEES-GGGHH-------HHHTTCS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh--HHHhhhhhhc-CCCeEEc-CCChH-------HHhCCCC
Confidence 478999999999999999999984 68888887654332 2343221111 1111111 22211 2224679
Q ss_pred EEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Q psy4557 796 ILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSN 854 (958)
Q Consensus 796 ilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~ 854 (958)
++|..||...... .+. ...++.|.. +++...+.+.+....+.|+++|.-
T Consensus 71 ivVitag~~~~~g---~sR---~~ll~~N~~----i~~~i~~~i~~~~p~~iiivvtNP 119 (144)
T d1mlda1 71 VVVIPAGVPRKPG---MTR---DDLFNTNAT----IVATLTAACAQHCPDAMICIISNP 119 (144)
T ss_dssp EEEECCSCCCCTT---CCG---GGGHHHHHH----HHHHHHHHHHHHCTTSEEEECSSC
T ss_pred EEEECCCcCCCCC---CCc---chHHHHHHH----HHHHHHHHHHhcCCCeEEEEecCc
Confidence 9999999753321 121 123455543 445566666656667899988854
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.21 Score=45.28 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=69.8
Q ss_pred EEEEEcCCchHHHHHHHHHHHc-C--CeEEEEecChhhHHHHHHHhhcCCCcEEE-EEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTL-G--AKVVAVARRIDRLENLKTSLQNAPGSIIV-KKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~-G--a~Vi~~~r~~~~l~~~~~~l~~~~~~~~~-~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.+.|+|++|.+|.++|..|+.+ | ..+.+.+... .++....++......... ....-.+.+.+ ..
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~-----------~~ 69 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPAL-----------EG 69 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHH-----------TT
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCcccc-----------CC
Confidence 4679999999999999998754 4 6799998764 454444556543222211 11222232221 24
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSN 854 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~ 854 (958)
-|++|..||...... .+- ...+..|. .+++...+.+.+..+++.||++|.-
T Consensus 70 aDvvvitaG~~~k~g---~~R---~dl~~~N~----~i~~~v~~~i~~~~p~aivivvtNP 120 (145)
T d2cmda1 70 ADVVLISAGVRRKPG---MDR---SDLFNVNA----GIVKNLVQQVAKTCPKACIGIITNP 120 (145)
T ss_dssp CSEEEECCSCCCCTT---CCG---GGGHHHHH----HHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred CCEEEECCCccCCCC---cch---hhHHHHHH----HHHHHHHHHHHhhCCCcEEEEccCC
Confidence 599999999864322 122 23345553 4456666666656667888888854
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.50 E-value=0.071 Score=49.63 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
-.|++++|.|+ +++|...++.+...|++|+++++++++++.+++ + +.... .|.++++..+. +.+..+.
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~-~---Ga~~~---i~~~~~~~~~~----~~~~~~g 93 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELARK-L---GASLT---VNARQEDPVEA----IQRDIGG 93 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-T---TCSEE---EETTTSCHHHH----HHHHHSS
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhhc-c---Ccccc---ccccchhHHHH----HHHhhcC
Confidence 36889999886 999999998888899999999999988875542 2 32222 25444443332 3333345
Q ss_pred ccEEEEcccc
Q psy4557 794 IDILVNNAGV 803 (958)
Q Consensus 794 iDilInnAG~ 803 (958)
.|..|.++|.
T Consensus 94 ~~~~i~~~~~ 103 (166)
T d1llua2 94 AHGVLVTAVS 103 (166)
T ss_dssp EEEEEECCSC
T ss_pred Cccccccccc
Confidence 6666666554
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=94.37 E-value=0.29 Score=45.11 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhhcC----CCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNA----PGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~~~----~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
+..+.+.|.|+ |.+|..+|..++.+|. .+++++++.+.++....++... .........| .++
T Consensus 18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d---~~~-------- 85 (160)
T d1i0za1 18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD---YSV-------- 85 (160)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS---GGG--------
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc---hhh--------
Confidence 45567777796 8899999999999995 7999999988876666555431 1222222222 222
Q ss_pred HHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Q psy4557 788 LAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSN 854 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~ 854 (958)
...=|++|..||...... .+.. ..+..| ..+++...+.+.+...+|.++++|--
T Consensus 86 ---~~~adiVVitAg~~~~~g---~tR~---~l~~~N----~~i~~~i~~~i~~~~p~aiiivvtNP 139 (160)
T d1i0za1 86 ---TANSKIVVVTAGVRQQEG---ESRL---NLVQRN----VNVFKFIIPQIVKYSPDCIIIVVSNP 139 (160)
T ss_dssp ---GTTCSEEEECCSCCCCTT---CCGG---GGHHHH----HHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred ---cccccEEEEecCCccccC---cchH---HHHHHH----HHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence 345699999999864321 1211 223333 34667777877766777888888854
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.35 E-value=0.016 Score=52.16 Aligned_cols=73 Identities=21% Similarity=0.317 Sum_probs=52.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|.++|.|+ |-+|+.+|+.|.++|..|+++..++++++++. ..+. .++..|.++++.+.++ ...+.|.
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~----~~~~--~~~~gd~~~~~~l~~a------~i~~a~~ 67 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SYAT--HAVIANATEENELLSL------GIRNFEY 67 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT----TTCS--EEEECCTTCTTHHHHH------TGGGCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH----HhCC--cceeeecccchhhhcc------CCccccE
Confidence 45677776 78999999999999999999999998877654 2332 3456899988765432 1234577
Q ss_pred EEEccc
Q psy4557 797 LVNNAG 802 (958)
Q Consensus 797 lInnAG 802 (958)
+|...+
T Consensus 68 vi~~~~ 73 (134)
T d2hmva1 68 VIVAIG 73 (134)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 776554
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=94.31 E-value=0.15 Score=46.87 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=68.1
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCC---------eEEEEecChhhHHHHHHHhhcCC-CcEEEEEecCCCHHHHHHHHHHH
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGA---------KVVAVARRIDRLENLKTSLQNAP-GSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga---------~Vi~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
.+.|+||+|.+|..+|..|+..+. +++...++.+.++....++.... .....+...-.+
T Consensus 6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 74 (154)
T d1y7ta1 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDP----------- 74 (154)
T ss_dssp EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCH-----------
T ss_pred EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCch-----------
Confidence 699999999999999999998763 23334456666666666654432 223222222111
Q ss_pred HHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEec
Q psy4557 788 LAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS-RRPGHILNIS 852 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~-~~~g~IV~is 852 (958)
.+.+..-|++|..||.... ...+.+++ +..|. ..++.+.+.+.+. ...+.|+.+|
T Consensus 75 ~~~~~~advViitaG~~~~---pg~~r~dl---~~~N~----~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 75 KVAFKDADYALLVGAAPRK---AGMERRDL---LQVNG----KIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp HHHTTTCSEEEECCCCCCC---TTCCHHHH---HHHHH----HHHHHHHHHHHHHSCTTCEEEECS
T ss_pred hhhcccccEEEeecCcCCC---CCCcHHHH---HHHHH----HHHHHHHHHHHHhCCCCcEEEEec
Confidence 1234578999999998643 23344333 34443 4556666666543 3346676665
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.23 E-value=0.12 Score=44.67 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID 751 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~ 751 (958)
.+++||.++|.||+. +|..-|+.|++.|++|++++....
T Consensus 8 l~l~~k~vlVvG~G~-va~~ka~~ll~~ga~v~v~~~~~~ 46 (113)
T d1pjqa1 8 CQLRDRDCLIVGGGD-VAERKARLLLEAGARLTVNALTFI 46 (113)
T ss_dssp ECCBTCEEEEECCSH-HHHHHHHHHHHTTBEEEEEESSCC
T ss_pred EEeCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeccCC
Confidence 378999999999876 999999999999999999987654
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=94.17 E-value=0.23 Score=44.80 Aligned_cols=112 Identities=16% Similarity=0.092 Sum_probs=71.1
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCC--eEEEEecC--hhhHHHHHHHhhc---CCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARR--IDRLENLKTSLQN---APGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~--~~~l~~~~~~l~~---~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
.+.|+||+|.+|.++|..++.+|. .+++.+.+ .+.++....++.. ......+...| .++
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~---~~~----------- 67 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG---YED----------- 67 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC---GGG-----------
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC---HHH-----------
Confidence 478999999999999999999984 68888853 3444433334431 22333333333 221
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecC
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISS 853 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS 853 (958)
...-|++|..||..... ..+- ...+..|. .+++...+.+.+...++.++.+|-
T Consensus 68 ~~~aDiVvitaG~~~~~---g~~R---~dl~~~N~----~I~~~i~~~i~~~~p~~i~ivvtN 120 (142)
T d1o6za1 68 TAGSDVVVITAGIPRQP---GQTR---IDLAGDNA----PIMEDIQSSLDEHNDDYISLTTSN 120 (142)
T ss_dssp GTTCSEEEECCCCCCCT---TCCH---HHHHHHHH----HHHHHHHHHHHTTCSCCEEEECCS
T ss_pred hhhcCEEEEeccccccc---CCch---hhHHHHHH----HHHHHHHHHHHhcCCCceEEEecC
Confidence 23579999999975322 2232 23444453 466777888876667788888764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.10 E-value=0.052 Score=51.20 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHH-HHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEN-DVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~-~v~~~~~~~~~~~ 791 (958)
-.|.+++|.|+ +|+|...++.+...|+ +|++++++.++++..++ + +.... .|.++.+ .+.+..... ..
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~-l---Ga~~~---i~~~~~d~~~~~~~~~~--~~ 95 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-L---GATEC---LNPKDYDKPIYEVICEK--TN 95 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-T---TCSEE---ECGGGCSSCHHHHHHHH--TT
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHH-c---CCcEE---EcCCCchhHHHHHHHHh--cC
Confidence 47889999986 8999999999999997 68888999988876543 2 22222 2332222 122222222 23
Q ss_pred CCccEEEEcccc
Q psy4557 792 GHIDILVNNAGV 803 (958)
Q Consensus 792 g~iDilInnAG~ 803 (958)
+.+|++|.++|.
T Consensus 96 ~G~d~vid~~g~ 107 (174)
T d1p0fa2 96 GGVDYAVECAGR 107 (174)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCcEEEEcCCC
Confidence 569999999986
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=93.94 E-value=0.39 Score=43.51 Aligned_cols=117 Identities=14% Similarity=0.177 Sum_probs=71.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcC--CeEEEEecChhhHHHHHHHhhc----CCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRIDRLENLKTSLQN----APGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~~~l~~~~~~l~~----~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
|.+.|+|+ |.+|..+|..|+.+| ..+++.+++.++++....++.. ..........| .+ .
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d---~~-----------~ 66 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---WA-----------A 66 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---GG-----------G
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC---HH-----------H
Confidence 56778895 899999999999998 3799999998887665555532 22222222222 22 2
Q ss_pred cCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Q psy4557 791 LGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSN 854 (958)
Q Consensus 791 ~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~ 854 (958)
...-|++|..||...... +..-..=...+..| ..+++...+.+.+....+.+|++|--
T Consensus 67 l~~adiVVitaG~~~~~~--~~~g~~R~~l~~~N----~~i~~~i~~~i~~~~p~aivivvtNP 124 (146)
T d1hyha1 67 LADADVVISTLGNIKLQQ--DNPTGDRFAELKFT----SSMVQSVGTNLKESGFHGVLVVISNP 124 (146)
T ss_dssp GTTCSEEEECCSCGGGTC---------CTTHHHH----HHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred hccccEEEEecccccccc--ccCCccHHHHHHHH----HHHHHHHHHHHhhcCCCeEEEEecCc
Confidence 235699999999753210 00000011223344 35567777777766677888887743
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.93 E-value=0.092 Score=49.21 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.|++++|.|+ +|+|...++.+...|+ +|++++++.++++.+++ .+... + .|-+ .+.++...+.. ....
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~~-~--i~~~-~~~~~~~~~~~--~~~g 100 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGADH-V--VDAR-RDPVKQVMELT--RGRG 100 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCSE-E--EETT-SCHHHHHHHHT--TTCC
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccce-e--ecCc-ccHHHHHHHhh--CCCC
Confidence 5789999886 9999999998888886 56677888887775553 22222 2 2333 23333333211 1235
Q ss_pred ccEEEEcccc
Q psy4557 794 IDILVNNAGV 803 (958)
Q Consensus 794 iDilInnAG~ 803 (958)
+|++|.++|.
T Consensus 101 ~d~vid~~g~ 110 (172)
T d1h2ba2 101 VNVAMDFVGS 110 (172)
T ss_dssp EEEEEESSCC
T ss_pred ceEEEEecCc
Confidence 9999999996
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.79 E-value=0.1 Score=49.07 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCC-HHHHHHHHHHHHHHcC
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI-ENDVKKVVREVLAELG 792 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g 792 (958)
.|.+|+|.|+ +|||...++.+...|+ .|++++++.++++-.+ ++ +... ++ |... ++.+....+.. ..+
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~-~~---Ga~~-~i--~~~~~~~~~~~~~~~~--~~~ 97 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-AL---GATD-CL--NPRELDKPVQDVITEL--TAG 97 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---TCSE-EE--CGGGCSSCHHHHHHHH--HTS
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHH-Hh---CCCc-cc--CCccchhhhhhhHhhh--hcC
Confidence 6789999975 9999999999999998 5777888888875443 33 2222 22 3221 12233333333 245
Q ss_pred CccEEEEcccc
Q psy4557 793 HIDILVNNAGV 803 (958)
Q Consensus 793 ~iDilInnAG~ 803 (958)
.+|++|.|+|.
T Consensus 98 G~d~vie~~G~ 108 (174)
T d1e3ia2 98 GVDYSLDCAGT 108 (174)
T ss_dssp CBSEEEESSCC
T ss_pred CCcEEEEeccc
Confidence 79999999996
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.76 E-value=0.069 Score=51.38 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
-.|.+|+|.|+ +|+|...+......|+ +|++++++.++++.+++ .+... + .|-.+ +++.+.+.++. ...
T Consensus 24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----~Ga~~-~--~~~~~-~~~~~~i~~~t-~g~ 93 (195)
T d1kola2 24 GPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGFEI-A--DLSLD-TPLHEQIAALL-GEP 93 (195)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCEE-E--ETTSS-SCHHHHHHHHH-SSS
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhh----ccccE-E--EeCCC-cCHHHHHHHHh-CCC
Confidence 37889999986 7999888888878887 78888999888765442 23222 2 23233 33333333333 223
Q ss_pred CccEEEEccccC
Q psy4557 793 HIDILVNNAGVM 804 (958)
Q Consensus 793 ~iDilInnAG~~ 804 (958)
.+|++|.+.|..
T Consensus 94 g~D~vid~vG~~ 105 (195)
T d1kola2 94 EVDCAVDAVGFE 105 (195)
T ss_dssp CEEEEEECCCTT
T ss_pred CcEEEEECcccc
Confidence 599999999964
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=93.68 E-value=0.4 Score=44.84 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=66.7
Q ss_pred EEEEEcCCchHHHHHHHHHHHcC---C----eEEEEecC--hhhHHHHHHHhhcCCC-cEEEEEecCCCHHHHHHHHHHH
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLG---A----KVVAVARR--IDRLENLKTSLQNAPG-SIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~G---a----~Vi~~~r~--~~~l~~~~~~l~~~~~-~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
.+.||||+|+||..++..|++.+ . .+.+.+.. .+.++.+.-++..... ....+.. -++.
T Consensus 26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~-~~~~---------- 94 (175)
T d7mdha1 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI-GIDP---------- 94 (175)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE-ESCH----------
T ss_pred EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccc-cccc----------
Confidence 69999999999999999999853 2 34444443 3456666666654321 1221111 1221
Q ss_pred HHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEec
Q psy4557 788 LAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHS-RRPGHILNIS 852 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~-~~~g~IV~is 852 (958)
.+.+...|++|..||..... .++. ...+..|. .+++...+.+.+. .....|+.+|
T Consensus 95 ~~~~~~aDvVvi~ag~~rkp---g~tR---~Dll~~N~----~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 95 YEVFEDVDWALLIGAKPRGP---GMER---AALLDING----QIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp HHHTTTCSEEEECCCCCCCT---TCCH---HHHHHHHH----HHHHHHHHHHHHHSCTTCEEEECS
T ss_pred hhhccCCceEEEeeccCCCC---CCcH---HHHHHHHH----HHHHHHHHHHHhhCCCCcEEEEec
Confidence 23456789999999986432 2333 33455553 4456666666543 3345666665
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.67 E-value=0.049 Score=51.20 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCC-HHHHHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTI-ENDVKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~ 791 (958)
-.|.+++|.|+ +|+|...++.+...|+ .|+++++++++++.+ +++.. .- ++ |..+ .+.+.+.++.. ..
T Consensus 27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~a-k~lGa---~~-~i--~~~~~~~~~~~~~~~~--~~ 96 (176)
T d2fzwa2 27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARA-KEFGA---TE-CI--NPQDFSKPIQEVLIEM--TD 96 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHHTC---SE-EE--CGGGCSSCHHHHHHHH--TT
T ss_pred CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHH-HHhCC---cE-EE--eCCchhhHHHHHHHHH--cC
Confidence 36889999998 5999999999999997 566667777776544 34432 11 22 2221 22333333333 23
Q ss_pred CCccEEEEcccc
Q psy4557 792 GHIDILVNNAGV 803 (958)
Q Consensus 792 g~iDilInnAG~ 803 (958)
+.+|++|.++|.
T Consensus 97 ~g~D~vid~~G~ 108 (176)
T d2fzwa2 97 GGVDYSFECIGN 108 (176)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCcEeeecCCC
Confidence 469999999985
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.49 E-value=0.094 Score=49.16 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHH-HHHHHHHHHHHc
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIEND-VKKVVREVLAEL 791 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~-v~~~~~~~~~~~ 791 (958)
-.|.+++|.|+ +|+|...+..++..|+ +|++++++.++++.+++ + +. ..++ |.++++. +++..+.. .-
T Consensus 27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~-~---GA-d~~i--n~~~~~~~~~~~~~~~--~~ 96 (175)
T d1cdoa2 27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-F---GA-TDFV--NPNDHSEPISQVLSKM--TN 96 (175)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-T---TC-CEEE--CGGGCSSCHHHHHHHH--HT
T ss_pred CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHH-c---CC-cEEE--cCCCcchhHHHHHHhh--cc
Confidence 47889999985 7788888888888887 68888899888876543 3 22 2222 3333222 22222222 23
Q ss_pred CCccEEEEcccc
Q psy4557 792 GHIDILVNNAGV 803 (958)
Q Consensus 792 g~iDilInnAG~ 803 (958)
+.+|+++.++|.
T Consensus 97 ~G~d~vid~~G~ 108 (175)
T d1cdoa2 97 GGVDFSLECVGN 108 (175)
T ss_dssp SCBSEEEECSCC
T ss_pred CCcceeeeecCC
Confidence 469999999996
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.44 E-value=0.043 Score=51.96 Aligned_cols=49 Identities=16% Similarity=0.376 Sum_probs=42.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN 762 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~ 762 (958)
..++||.|+|.|+ ||-+++++..|.+.| +|.++.|+.++.+++.+.+..
T Consensus 14 ~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~ 62 (177)
T d1nvta1 14 GRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAE 62 (177)
T ss_dssp CCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHH
Confidence 4589999999987 588999999998777 999999999999998877753
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.27 E-value=0.07 Score=48.88 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR 749 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~ 749 (958)
.+++||.+||.||+. +|..-|+.|++.|++|++++..
T Consensus 9 ~~l~gkrvLViGgG~-va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 9 HQLKDKRILLIGGGE-VGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp ECCTTCEEEEEEESH-HHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeeCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCC
Confidence 469999999999955 9999999999999999999754
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.19 E-value=0.36 Score=43.38 Aligned_cols=109 Identities=16% Similarity=0.119 Sum_probs=69.4
Q ss_pred EEEEcCCchHHHHHHHHHHHcC--CeEEEEecChhhHHHHHHHhhc---CCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRIDRLENLKTSLQN---APGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~~~l~~~~~~l~~---~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+.|.|+ |++|..+|..++.+| ..+++.++++++++....++.. .......... +.++ ...
T Consensus 3 I~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~---~~~~-----------~~~ 67 (140)
T d1a5za1 3 IGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG---DYAD-----------LKG 67 (140)
T ss_dssp EEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEEC---CGGG-----------GTT
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCC---cHHH-----------hcC
Confidence 455686 889999999999988 4799999998877655544432 1222333222 2222 235
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEec
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNIS 852 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~is 852 (958)
-|++|..||..... ..+.. ..+..|. .+++...+.+.+..+.+.++++|
T Consensus 68 adivvitag~~~~~---g~~r~---dl~~~N~----~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 68 SDVVIVAAGVPQKP---GETRL---QLLGRNA----RVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp CSEEEECCCCCCCS---SCCHH---HHHHHHH----HHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCEEEEecccccCC---Ccchh---hhhcccc----chHHHHHHHHHhcCCCcEEEEeC
Confidence 69999999986432 22222 2344442 35667777777666778888877
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=93.15 E-value=0.45 Score=42.81 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=68.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcC-CeEEEEecChhhHHHHHHHhhcC----CCcEEEEEecCCCHHHHHHHHHHHHHHc
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQNA----PGSIIVKKLDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~l~~~~~~l~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 791 (958)
|.+.|.|+ |.+|.++|..|+.+| +.+++++.+.++.+....++... .....+..+ .+.+ ..
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~--~d~~-----------~~ 67 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NNYA-----------DT 67 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCGG-----------GG
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEec--CcHH-----------Hh
Confidence 34556686 899999999999988 58999999888776655555321 111112111 1111 12
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecC
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISS 853 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS 853 (958)
..-|++|.+||...... .+ -...+..|. .+++...+.+.+..+.+.++++|-
T Consensus 68 ~~advvvitag~~~~~~---~~---r~dl~~~N~----~i~~~i~~~i~k~~p~aivivvtN 119 (142)
T d1uxja1 68 ANSDVIVVTSGAPRKPG---MS---REDLIKVNA----DITRACISQAAPLSPNAVIIMVNN 119 (142)
T ss_dssp TTCSEEEECCSCC---------------CHHHHH----HHHHHHHHHHGGGCTTCEEEECSS
T ss_pred cCCCEEEEeeeccCCcC---cc---hhHHHhHHH----HHHHHHHHHHhccCCCceEEEeCC
Confidence 35699999999864321 11 123344443 467788888877677788887663
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.039 Score=46.20 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChh
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRID 751 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~ 751 (958)
.++||.++|.|. +.-|+++|+.|+++|++|++.+.+..
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 579999999998 45699999999999999999987643
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=93.03 E-value=0.48 Score=42.60 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=68.2
Q ss_pred EEEEcCCchHHHHHHHHHHHcC--CeEEEEecChhhHHHHHHHhhcC----CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRIDRLENLKTSLQNA----PGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~~~l~~~~~~l~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
+.|+|| |.+|..+|..++..| ..+++.++++++++.....+... .....+... .+.+ .+.
T Consensus 3 I~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~-----------~~~ 68 (142)
T d1guza1 3 ITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYA-----------DTA 68 (142)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGG-----------GGT
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHH-----------Hhc
Confidence 556686 899999999999998 48999999988776554444321 112222221 2222 234
Q ss_pred CccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecC
Q psy4557 793 HIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISS 853 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS 853 (958)
.-|++|..||...... .+.. ..+..|. .+++...+.+.+..+.+.++++|-
T Consensus 69 dadvvvitag~~~~~g---~~r~---~l~~~N~----~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1guza1 69 NSDIVIITAGLPRKPG---MTRE---DLLMKNA----GIVKEVTDNIMKHSKNPIIIVVSN 119 (142)
T ss_dssp TCSEEEECCSCCCCTT---CCHH---HHHHHHH----HHHHHHHHHHHHHCSSCEEEECCS
T ss_pred CCeEEEEEEecCCCCC---CchH---HHHHHHH----HHHHHHHHHhhccCCCeEEEEecC
Confidence 6799999999854321 1221 2333333 345566666665556788887764
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=92.41 E-value=0.85 Score=40.89 Aligned_cols=113 Identities=9% Similarity=0.012 Sum_probs=68.7
Q ss_pred ceEEeccccchHHHHHHHHhcCCCC-eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~-~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+|-|.||+|.+|+++...|+.++-. +++.+........+.....+..... .+..+.++..+|..
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~-------~~~~~~~i~~~~~~-------- 66 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI-------AYDSNTRVRQGGYE-------- 66 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH-------TTTCCCEEEECCGG--------
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcc-------cccCCceEeeCCHH--------
Confidence 5889999999999999999887655 4554443222222221111211111 11234444445432
Q ss_pred HHHHHHHhcccCEEEEcccccC-cccChHHHHhhhHHHHHHHHHhhccCCCccEEE
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFVN-LILPYNALYKSNVLATKNLIEFSFLNKIKSFHY 454 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v~-~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~ 454 (958)
. ..+.|+|+=+|+... ...+..++...|+.=.+++.+...+...+.++-
T Consensus 67 -----~-~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~i 116 (142)
T d1o6za1 67 -----D-TAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISL 116 (142)
T ss_dssp -----G-GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEE
T ss_pred -----H-hhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 1 247899998888543 334567888899999999887766665555543
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.37 E-value=0.71 Score=41.61 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=65.8
Q ss_pred EEEEEcCCchHHHHHHHHHHHcC--CeEEEEecChh--hHHHHHHHhhc----CCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLG--AKVVAVARRID--RLENLKTSLQN----APGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~G--a~Vi~~~r~~~--~l~~~~~~l~~----~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
.+.|.||+|.+|.++|..++.+| ..+++++++.+ +++....++.. ..........--.+. +
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~-----------~ 70 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL-----------R 70 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG-----------G
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH-----------H
Confidence 37899999999999999999999 48999998753 34444444432 122222211111121 2
Q ss_pred HcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEec
Q psy4557 790 ELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNIS 852 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~is 852 (958)
....-|++|.+||..... ..+.. ..+..|. .+++...+.+.+... ..|+.+|
T Consensus 71 ~l~~aDvVVitAG~~~~~---g~sR~---dl~~~Na----~iv~~i~~~i~~~~~-~~iivVt 122 (145)
T d1hyea1 71 IIDESDVVIITSGVPRKE---GMSRM---DLAKTNA----KIVGKYAKKIAEICD-TKIFVIT 122 (145)
T ss_dssp GGTTCSEEEECCSCCCCT---TCCHH---HHHHHHH----HHHHHHHHHHHHHCC-CEEEECS
T ss_pred HhccceEEEEecccccCC---CCChh---hhhhhhH----HHHHHHHHHHhccCC-CeEEEEc
Confidence 234579999999985332 22322 3444554 345556666654444 3455453
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=92.28 E-value=0.19 Score=45.92 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=56.8
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccEE
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDIL 797 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 797 (958)
.++|.|. +-+|+.++++|.++|..|+++..++++..+..+..... .+.++..|.++++..+++ ...+.|.+
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~--~~~vi~Gd~~d~~~L~~a------~i~~a~~v 75 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD--NADVIPGDSNDSSVLKKA------GIDRCRAI 75 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT--TCEEEESCTTSHHHHHHH------TTTTCSEE
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC--CcEEEEccCcchHHHHHh------ccccCCEE
Confidence 4777777 68999999999999999999999988766666555433 366788999998655432 23457777
Q ss_pred EEccc
Q psy4557 798 VNNAG 802 (958)
Q Consensus 798 InnAG 802 (958)
|...+
T Consensus 76 i~~~~ 80 (153)
T d1id1a_ 76 LALSD 80 (153)
T ss_dssp EECSS
T ss_pred EEccc
Confidence 76654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.80 E-value=0.11 Score=48.16 Aligned_cols=77 Identities=23% Similarity=0.294 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.|++++|.|+ |+||...++.+...|++|++++++.++++.+++ + +.... .|-++.+. .. .+.+.....
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~-~---Ga~~~---~~~~~~~~-~~---~~~~~~~~~ 94 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-L---GADLV---VNPLKEDA-AK---FMKEKVGGV 94 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-T---TCSEE---ECTTTSCH-HH---HHHHHHSSE
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh-c---Cccee---cccccchh-hh---hcccccCCC
Confidence 5778999875 999999988888999999999999998876543 2 32222 24333322 22 223323445
Q ss_pred cEEEEcccc
Q psy4557 795 DILVNNAGV 803 (958)
Q Consensus 795 DilInnAG~ 803 (958)
|.+|.++|.
T Consensus 95 ~~~v~~~~~ 103 (168)
T d1rjwa2 95 HAAVVTAVS 103 (168)
T ss_dssp EEEEESSCC
T ss_pred ceEEeecCC
Confidence 666677764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=91.79 E-value=0.25 Score=45.59 Aligned_cols=81 Identities=22% Similarity=0.223 Sum_probs=53.9
Q ss_pred EEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhh--------c--CCCcEEEEEecCCCHHHHHHHHHHHH
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ--------N--APGSIIVKKLDVTIENDVKKVVREVL 788 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~--------~--~~~~~~~~~~Dvs~~~~v~~~~~~~~ 788 (958)
+.|.|. |-+|.++|+.|.++|++|++.+|+.+.++++++.-. + ....+.++.+ ..+++.++++++.
T Consensus 3 I~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav---p~~~~~~vl~~l~ 78 (165)
T d2f1ka2 3 IGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT---PIQLILPTLEKLI 78 (165)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS---CHHHHHHHHHHHG
T ss_pred EEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC---cHhhhhhhhhhhh
Confidence 344454 899999999999999999999999888877654310 0 1123333322 4567888888887
Q ss_pred HHcCCccEEEEcccc
Q psy4557 789 AELGHIDILVNNAGV 803 (958)
Q Consensus 789 ~~~g~iDilInnAG~ 803 (958)
.....=.++++.++.
T Consensus 79 ~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 79 PHLSPTAIVTDVASV 93 (165)
T ss_dssp GGSCTTCEEEECCSC
T ss_pred hhcccccceeecccc
Confidence 655544455555443
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.12 Score=49.49 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=37.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhh
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQ 761 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~ 761 (958)
|.+.|.|| |=+|..+|..|+.+|+.|++.+++.+.+++..+.+.
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~ 48 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIE 48 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHH
Confidence 57888888 559999999999999999999999988877666553
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=91.50 E-value=0.13 Score=48.25 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=38.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHH
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTS 759 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~ 759 (958)
+|++-|.|| |.+|.++|..|+++|+.|.+.+|+.++++.+.+.
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~ 43 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR 43 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc
Confidence 478888888 8899999999999999999999999888877654
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.49 E-value=0.64 Score=42.16 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=71.0
Q ss_pred EEEEEcCCchHHHHHHHHHHHcC-CeEEEEecChhhHHHHHHHhhcC----CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQNA----PGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~l~~~~~~l~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
.+.|.|+ |++|..+|..++..+ ..+++.+++.++++....++... .....+...+ +. +...
T Consensus 5 KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~-----------~~~~ 70 (150)
T d1t2da1 5 KIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY-----------DDLA 70 (150)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG-----------GGGT
T ss_pred eEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc-----------cccC
Confidence 4666685 899999999888888 57999999988777665555321 1122222222 12 1234
Q ss_pred CccEEEEccccCCCcccc--CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Q psy4557 793 HIDILVNNAGVMYFTLME--KYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSN 854 (958)
Q Consensus 793 ~iDilInnAG~~~~~~~~--~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~ 854 (958)
.-|++|..||........ +.+. ...+..|. .+.+.+.+.+.+....+.++++|--
T Consensus 71 ~advvvitag~~~~~g~~~~~~~R---~~l~~~N~----~iv~~i~~~i~~~~p~aivivvtNP 127 (150)
T d1t2da1 71 GADVVIVTAGFTKAPGKSDKEWNR---DDLLPLNN----KIMIEIGGHIKKNCPNAFIIVVTNP 127 (150)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCG---GGGHHHHH----HHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred CCcEEEEecccccCCCCCccccch---hHHHHHHH----HHHHHHHHHHHhcCCCeEEEEecCc
Confidence 679999999986432111 1111 12344443 4566677777666667888887743
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=91.43 E-value=0.34 Score=44.32 Aligned_cols=120 Identities=16% Similarity=0.095 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcC-CeEEEEecChhhHHHHHHHhhc----CCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSLQN----APGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~l~~~~~~l~~----~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
+.+.+.|.|+ |++|..+|..++..| +.+++++.+.++++.....+.. .......... ++.++
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--~~~~~---------- 72 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE--YSYEA---------- 72 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE--CSHHH----------
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEecc--Cchhh----------
Confidence 3456777797 899999999999988 5899999998877766555432 1111111111 12111
Q ss_pred HcCCccEEEEccccCCCcc--ccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Q psy4557 790 ELGHIDILVNNAGVMYFTL--MEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISSN 854 (958)
Q Consensus 790 ~~g~iDilInnAG~~~~~~--~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS~ 854 (958)
....-|++|..||...... -.+.+-. ..+..|. .+++..++.+.+....+.++++|.-
T Consensus 73 ~~~~adiVvitag~~~~~g~~~~~~tR~---~l~~~n~----~iv~~i~~~i~~~~p~aiviivsNP 132 (154)
T d1pzga1 73 ALTGADCVIVTAGLTKVPGKPDSEWSRN---DLLPFNS----KIIREIGQNIKKYCPKTFIIVVTNP 132 (154)
T ss_dssp HHTTCSEEEECCSCSSCTTCCGGGCCGG---GGHHHHH----HHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred hhcCCCeEEEecccccCCCCCCcccchh---hhhhhhH----HHHHHHHHHHHhcCCCcEEEEeCCc
Confidence 1235799999999864321 1112221 2233333 3456666666656667888887754
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=91.38 E-value=0.27 Score=46.01 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=59.3
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc---------------CCCcEEEEEecCCCHHHHHH
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN---------------APGSIIVKKLDVTIENDVKK 782 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~---------------~~~~~~~~~~Dvs~~~~v~~ 782 (958)
.+-|.|- +-+|.++|+.|+++|++|++.+|+.++.+++.+.-.. .......+...+.+.+.+.+
T Consensus 4 nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~ 82 (176)
T d2pgda2 4 DIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (176)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred cEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence 3555665 7899999999999999999999999998887653211 00112233445667788888
Q ss_pred HHHHHHHHcCCccEEEEcccc
Q psy4557 783 VVREVLAELGHIDILVNNAGV 803 (958)
Q Consensus 783 ~~~~~~~~~g~iDilInnAG~ 803 (958)
..+.+......=+++|.+.-+
T Consensus 83 v~~~l~~~~~~g~iiid~sT~ 103 (176)
T d2pgda2 83 FIEKLVPLLDIGDIIIDGGNS 103 (176)
T ss_dssp HHHHHHHHCCTTCEEEECSCC
T ss_pred HHHHHHhccccCcEEEecCcc
Confidence 888877766555677766543
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=91.21 E-value=0.42 Score=43.28 Aligned_cols=115 Identities=11% Similarity=0.053 Sum_probs=66.8
Q ss_pred cCceEEeccccchHHHHHHHHhcCCC-CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTK-CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
.++|-|.|+ |++|+.+...|+.++- .+|+.+.+... .+.....+.. +. ........+..+|.+
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~--~~~g~a~Dl~---~a----~~~~~~~~~~~~d~~------ 68 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKD--RTKGDALDLE---DA----QAFTAPKKIYSGEYS------ 68 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHH--HHHHHHHHHH---GG----GGGSCCCEEEECCGG------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccc--hhHHHHHHHh---cc----ccccCCceEeeccHH------
Confidence 457899995 9999999999987654 36776665322 1111111111 10 011223445566632
Q ss_pred CcHHHHHHHhcccCEEEEccccc-CcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEec
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFV-NLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVST 457 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v-~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST 457 (958)
. ..++|+|+-+|+.- ....+..++...|+.-.+++.+-..+...+.++.+-|
T Consensus 69 -------~-~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 69 -------D-CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp -------G-GTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred -------H-hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 1 25789999998753 3344556777889999999987776666676665544
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.15 E-value=0.72 Score=41.96 Aligned_cols=114 Identities=12% Similarity=0.136 Sum_probs=63.5
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCC-------eEEEEecC--hhhHHHHHHHhhcC-CCcEEEEEecCCCHHHHHHHHHHH
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGA-------KVVAVARR--IDRLENLKTSLQNA-PGSIIVKKLDVTIENDVKKVVREV 787 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga-------~Vi~~~r~--~~~l~~~~~~l~~~-~~~~~~~~~Dvs~~~~v~~~~~~~ 787 (958)
.+.|+||+|.+|..+|..|+..+. .+++.+.+ .++++.+..++... ......+..- ++.
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~---------- 73 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIAT-DKE---------- 73 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEE-SCH----------
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccC-ccc----------
Confidence 689999999999999999987652 34555443 34455554444322 1222221111 111
Q ss_pred HHHcCCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-CCCCcEEEEec
Q psy4557 788 LAELGHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLH-SRRPGHILNIS 852 (958)
Q Consensus 788 ~~~~g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~-~~~~g~IV~is 852 (958)
.+.+...|++|..||.......... ..+..|. ..++...+.+.+ ....+.|+.+|
T Consensus 74 ~~~~~~~dvVVitag~~~~~g~sr~------dll~~N~----~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 74 EIAFKDLDVAILVGSMPRRDGMERK------DLLKANV----KIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp HHHTTTCSEEEECCSCCCCTTCCTT------TTHHHHH----HHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccccCCceEEEEecccCCCCCCchh------HHHHHhH----HHHHHHHHHHHhhCCCceEEEEec
Confidence 1234578999999998654322221 1233333 455666666654 34445666655
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=90.95 E-value=0.19 Score=48.35 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=39.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLK 757 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~ 757 (958)
.+|+||+++|.| -|.+|..+|+.|.+.|++|++.+.+.+++....
T Consensus 23 ~~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~ 67 (201)
T d1c1da1 23 GSLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAHAV 67 (201)
T ss_dssp CCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHHHH
Confidence 479999999998 566999999999999999999999887776543
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.90 E-value=0.85 Score=41.05 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=64.3
Q ss_pred ceEEeccccchHHHHHHHHhcC-CC-CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVD-TK-CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~-~~-~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
+|.|+|++|.+|+++...|..+ +. ..+..+.... . .... .+.-.+.. ...+...+.++
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~--~~g~---a~Dl~h~~-----~~~~~~~~~~~--------- 61 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-V--TPGV---AVDLSHIP-----TAVKIKGFSGE--------- 61 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-T--HHHH---HHHHHTSC-----SSCEEEEECSS---------
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-c--chhH---HHHHHCCc-----cccCCcEEEcC---------
Confidence 5889999999999988776543 33 3555554322 1 1111 11111111 11122222221
Q ss_pred cHHHHHHHhcccCEEEEccccc-CcccChHHHHhhhHHHHHHHHHhhccCCCccEE
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFV-NLILPYNALYKSNVLATKNLIEFSFLNKIKSFH 453 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v-~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~ 453 (958)
..|.. ..+.|+||-+|+.. ....+..++...|..-.+++.+...+...+.++
T Consensus 62 --~~~~~-~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aiv 114 (145)
T d2cmda1 62 --DATPA-LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACI 114 (145)
T ss_dssp --CCHHH-HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred --CCccc-cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 23543 45789999999864 445566788889999999998776655445543
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.89 E-value=0.7 Score=41.63 Aligned_cols=115 Identities=15% Similarity=0.046 Sum_probs=63.6
Q ss_pred ceEEeccccchHHHHHHHHhcCCCC-eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCCc
Q psy4557 321 NVLLTGVTGYLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLKN 399 (958)
Q Consensus 321 ~VllTGaTGflGs~ll~~LL~~~~~-~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~~ 399 (958)
+|.|.||+|.+|+.+...|+.++-. ++..+.+..+...+...-.+........ ....++.+...+
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~----~~~~~~~~~~~~---------- 67 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGT----RSDANIYVESDE---------- 67 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTS----CCCCEEEEEETT----------
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhccccc----ccCCccccCCcc----------
Confidence 5889999999999999888776643 4544444322211111111111100000 011122222211
Q ss_pred HHHHHHHhcccCEEEEccccc-CcccChHHHHhhhHHHHHHHHHhhccCCCccE
Q psy4557 400 QDEYVSLSYEIDMIIHAAAFV-NLILPYNALYKSNVLATKNLIEFSFLNKIKSF 452 (958)
Q Consensus 400 ~~~~~~l~~~vd~IiH~AA~v-~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~ 452 (958)
.|. -..+.|+||=+|+.. ....+..++...|+.=.+++.+...+...+.+
T Consensus 68 --d~~-~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~i 118 (145)
T d1hyea1 68 --NLR-IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKI 118 (145)
T ss_dssp --CGG-GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred --hHH-HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeE
Confidence 122 234789999998864 33456778889999988888766544433444
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=90.75 E-value=0.31 Score=44.05 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=68.8
Q ss_pred EEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQNA---PGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
+.|.|+ |.+|.++|..++.+|. .++++++++++++....++... .....+... .+.++ ...
T Consensus 4 i~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~--~~~~~-----------~~d 69 (143)
T d1llda1 4 LAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDPEI-----------CRD 69 (143)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCGGG-----------GTT
T ss_pred EEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC--CCHHH-----------hhC
Confidence 455586 8899999999999984 7999999988776555455421 122222211 11111 234
Q ss_pred ccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEec
Q psy4557 794 IDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNIS 852 (958)
Q Consensus 794 iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~is 852 (958)
-|++|..||..... ..+.. ..+..|. .+++...+.+.+....+.++++|
T Consensus 70 aDvVVitaG~~~~~---g~~R~---dl~~~N~----~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 70 ADMVVITAGPRQKP---GQSRL---ELVGATV----NILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp CSEEEECCCCCCCT---TCCHH---HHHHHHH----HHHHHHHHHHHHHCTTSEEEECC
T ss_pred CcEEEEecccccCC---CCchh---hhhhhhH----HHHHHHHHHHHhhCCCeEEEEeC
Confidence 69999999985432 23332 3445554 45566666666666678888777
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.48 E-value=1.5 Score=39.78 Aligned_cols=108 Identities=13% Similarity=0.025 Sum_probs=61.0
Q ss_pred CceEEeccccchHHHHHHHHhcCCCC-----eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKC-----TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEM 394 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~-----~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~ 394 (958)
-+|.|+||+|++|+++...|....-. -...++.........+.+..-+. ... .....-+...
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~----- 71 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELE--DCA------FPLLAGLEAT----- 71 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH--TTT------CTTEEEEEEE-----
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhh--ccc------cccccccccC-----
Confidence 47999999999999999888765421 12333333222222221111111 000 1111111111
Q ss_pred CCCCcHHHHHHHhcccCEEEEccccc-CcccChHHHHhhhHHHHHHHHHhhcc
Q psy4557 395 LGLKNQDEYVSLSYEIDMIIHAAAFV-NLILPYNALYKSNVLATKNLIEFSFL 446 (958)
Q Consensus 395 lGL~~~~~~~~l~~~vd~IiH~AA~v-~~~~~~~~~~~~NV~gt~~ll~~a~~ 446 (958)
. ..| ....+.|+||=+|+.. ....+..++...|+.-.+++.+...+
T Consensus 72 ----~-~~~-~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k 118 (154)
T d1y7ta1 72 ----D-DPK-VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118 (154)
T ss_dssp ----S-CHH-HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----C-chh-hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 0 123 2456899999999864 33556677888999999998876554
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.02 E-value=0.48 Score=45.37 Aligned_cols=78 Identities=24% Similarity=0.276 Sum_probs=59.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLA 789 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 789 (958)
...++||+++=-|+++|. ++..++.+|+ +|+.+..+.+.++.+.+.+...+.+..++..|+...
T Consensus 42 ~~dl~g~~vLDlg~GtG~---l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~------------ 106 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGV---LSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF------------ 106 (201)
T ss_dssp TTSSTTCEEEEETCTTCH---HHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC------------
T ss_pred cCCCCCCEEEECcCcchH---HHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh------------
Confidence 467899999999977662 2334557786 799999999988888887776667778888886432
Q ss_pred HcCCccEEEEccccC
Q psy4557 790 ELGHIDILVNNAGVM 804 (958)
Q Consensus 790 ~~g~iDilInnAG~~ 804 (958)
.+++|++|.|--..
T Consensus 107 -~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 107 -NSRVDIVIMNPPFG 120 (201)
T ss_dssp -CCCCSEEEECCCCS
T ss_pred -CCcCcEEEEcCccc
Confidence 46799999998653
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=90.00 E-value=1.2 Score=41.31 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=62.2
Q ss_pred ccCceEEeccccchHHHHHHHHhcCC------CCeEEEeccCCChhhHHHHHHHHHHH-hccccccccccCceEEecccC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDT------KCTLFCPVRETPNKTLLQRLEDIMLK-YHMSLDLNNYTDRLILVKSDL 390 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~------~~~V~clvR~~~~~~~~~rl~~~~~~-~~~~~~~~~~~~ri~~v~gDl 390 (958)
++-+|.||||+|.+|++|+..|.+.. ...++.+..... ...+...... ..... . ..+-..+..|
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~----~~~l~g~~mdl~d~a~--~--~~~~~~~~~~- 93 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERS----FQALEGVAMELEDSLY--P--LLREVSIGID- 93 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGG----HHHHHHHHHHHHTTTC--T--TEEEEEEESC-
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccc----cchhcchhhhhccccc--c--cccCcccccc-
Confidence 34579999999999999999887532 113343333222 1122211110 11000 0 0111122222
Q ss_pred CCCCCCCCcHHHHHHHhcccCEEEEccccc-CcccChHHHHhhhHHHHHHHHHhhcc
Q psy4557 391 SLEMLGLKNQDEYVSLSYEIDMIIHAAAFV-NLILPYNALYKSNVLATKNLIEFSFL 446 (958)
Q Consensus 391 ~~~~lGL~~~~~~~~l~~~vd~IiH~AA~v-~~~~~~~~~~~~NV~gt~~ll~~a~~ 446 (958)
.|+ ...+.|+||=.|+.. ....+..++...|+.-.+++.+...+
T Consensus 94 -----------~~~-~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~ 138 (175)
T d7mdha1 94 -----------PYE-VFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNA 138 (175)
T ss_dssp -----------HHH-HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------chh-hccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 233 346899999999865 45667788999999999998876655
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=89.83 E-value=0.34 Score=43.99 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCc
Q psy4557 715 ANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHI 794 (958)
Q Consensus 715 ~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 794 (958)
.=|.+.|.||.|-+|..+|+.|.++|+.|.+.+|+.....+.. + ..........+ ...+...+.++......=
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~--~--~~~~~v~~~~~---~~~~~~v~~~~~~~~~~~ 80 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESI--L--ANADVVIVSVP---INLTLETIERLKPYLTEN 80 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHH--H--TTCSEEEECSC---GGGHHHHHHHHGGGCCTT
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchh--h--hhccccccccc---hhhheeeeecccccccCC
Confidence 3457889999999999999999999999999999876544322 1 12334443333 345555666665543322
Q ss_pred cEEEEccc
Q psy4557 795 DILVNNAG 802 (958)
Q Consensus 795 DilInnAG 802 (958)
-+++..+.
T Consensus 81 ~iiiD~~S 88 (152)
T d2pv7a2 81 MLLADLTS 88 (152)
T ss_dssp SEEEECCS
T ss_pred ceEEEecc
Confidence 24444443
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=89.81 E-value=0.22 Score=45.95 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcC-------CCcEEEEEecCCCHHHHHHHH---HHHHHHcCC
Q psy4557 724 SSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNA-------PGSIIVKKLDVTIENDVKKVV---REVLAELGH 793 (958)
Q Consensus 724 as~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~-------~~~~~~~~~Dvs~~~~v~~~~---~~~~~~~g~ 793 (958)
|-+-+|.++|+.|+++|++|++.+|+.++++++.+.-... ..+..++..=+.+.+++++++ +.+.....+
T Consensus 7 GlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~ 86 (161)
T d1vpda2 7 GLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP 86 (161)
T ss_dssp CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT
T ss_pred ehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCC
Confidence 4578999999999999999999999999888776522100 011223334456777777766 334444434
Q ss_pred ccEEEEcccc
Q psy4557 794 IDILVNNAGV 803 (958)
Q Consensus 794 iDilInnAG~ 803 (958)
=.++|.+.-+
T Consensus 87 g~iiid~sT~ 96 (161)
T d1vpda2 87 GTVLIDMSSI 96 (161)
T ss_dssp TCEEEECSCC
T ss_pred CCEEEECCCC
Confidence 4566665443
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=89.56 E-value=0.13 Score=41.32 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=30.8
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCCh
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPN 356 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~ 356 (958)
++.+|||+||+|-+|++.+. |++.-+.+|++..+..+.
T Consensus 31 ~~~~vlI~gasGgVG~~aiQ-lak~~G~~Vi~~t~s~~k 68 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVA-LLHKLGYQVVAVSGREST 68 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHH-HHHHTTCCEEEEESCGGG
T ss_pred CCCcEEEEeCCCcHHHHHHH-HHHHcCCeEEEEECCHHH
Confidence 45689999999999999885 666667899998886543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=89.27 E-value=0.19 Score=47.77 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=36.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHh
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL 760 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l 760 (958)
|.+.|.|| |=+|..+|..|+..|++|++.+++.+.+++..+.+
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i 47 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEA 47 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhh
Confidence 45778888 66999999999999999999999998877665544
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=89.11 E-value=0.29 Score=45.21 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=39.3
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLEN 755 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~ 755 (958)
|...+.||.++|.|-|.=.|+-++..|.++|++|+++.+....+.+
T Consensus 31 y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~ 76 (166)
T d1b0aa1 31 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRH 76 (166)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHH
T ss_pred cCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHH
Confidence 4457899999999999999999999999999999998666544443
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=89.07 E-value=1.4 Score=39.89 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=69.4
Q ss_pred ccCceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHH-HHHHHHHHHhccccccccccCceEEecccCCCCCCC
Q psy4557 318 KYGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLL-QRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLG 396 (958)
Q Consensus 318 ~~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~-~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lG 396 (958)
+.++|-|.|+ |.+|+.+...|...+-..++.+....+...+. ..+.+...... ........
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~---------~~~~~~~~-------- 67 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVD---------TNVSVRAE-------- 67 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTT---------CCCCEEEE--------
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccC---------CeeEEecc--------
Confidence 3568899997 99999988766665545766655544432222 11222211110 01111111
Q ss_pred CCcHHHHHHHhcccCEEEEcccccCcc------cChHHHHhhhHHHHHHHHHhhccCCCccEEEEec
Q psy4557 397 LKNQDEYVSLSYEIDMIIHAAAFVNLI------LPYNALYKSNVLATKNLIEFSFLNKIKSFHYVST 457 (958)
Q Consensus 397 L~~~~~~~~l~~~vd~IiH~AA~v~~~------~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST 457 (958)
..+.....+.|+|+=+|+..... .+..++...|+.-++++++-..+...+.++.+-|
T Consensus 68 ----~~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 68 ----YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp ----CSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred ----CchhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 12334457899999998764322 2556677889999999988766665566655544
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.00 E-value=2.7 Score=37.37 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=68.6
Q ss_pred EEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhhc----CCCcEEEEE-ecCCCHHHHHHHHHHHHHHc
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQN----APGSIIVKK-LDVTIENDVKKVVREVLAEL 791 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~~----~~~~~~~~~-~Dvs~~~~v~~~~~~~~~~~ 791 (958)
+.|.|+ |.+|..+|..++.+|. .+++++++.++++....++.. ......+.. -|. + ..
T Consensus 3 I~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~---~-----------~~ 67 (142)
T d1ojua1 3 LGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY---S-----------LL 67 (142)
T ss_dssp EEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG---G-----------GG
T ss_pred EEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH---H-----------Hh
Confidence 556686 9999999999999984 699999998887655444431 222222222 222 1 23
Q ss_pred CCccEEEEccccCCCccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEecC
Q psy4557 792 GHIDILVNNAGVMYFTLMEKYKLEEWNAMINVNIKGVLHCIGNILPSMLHSRRPGHILNISS 853 (958)
Q Consensus 792 g~iDilInnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~~~g~IV~isS 853 (958)
..-|++|..||..... ..+. ...+..| ..+.+...+.+.+....+.++++|-
T Consensus 68 ~~adiVvitag~~~~~---g~~r---~~l~~~n----~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1ojua1 68 KGSEIIVVTAGLARKP---GMTR---LDLAHKN----AGIIKDIAKKIVENAPESKILVVTN 119 (142)
T ss_dssp TTCSEEEECCCCCCCS---SCCH---HHHHHHH----HHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred ccccEEEEeccccCCC---CCch---HHHHHHh----hHHHHHHHHHHHhhCCCcEEEEecC
Confidence 4579999999975432 2222 2333334 3455667777776666788887774
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=88.16 E-value=1.2 Score=41.30 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC--C----------------cEEEEEecCCCHHHHHHHHH
Q psy4557 724 SSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP--G----------------SIIVKKLDVTIENDVKKVVR 785 (958)
Q Consensus 724 as~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~--~----------------~~~~~~~Dvs~~~~v~~~~~ 785 (958)
|-+-+|.++|+.|+++|++|.+.+|+.++.+++.++-.... . ....+..-+.+...+...+.
T Consensus 8 GlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (178)
T d1pgja2 8 GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIE 87 (178)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHH
T ss_pred eehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcchhhhhhh
Confidence 66789999999999999999999999999998876542111 0 11122223344455556666
Q ss_pred HHHHHcCCccEEEEcc
Q psy4557 786 EVLAELGHIDILVNNA 801 (958)
Q Consensus 786 ~~~~~~g~iDilInnA 801 (958)
.....+..=+++|+..
T Consensus 88 ~~~~~~~~~~iii~~s 103 (178)
T d1pgja2 88 QLKKVFEKGDILVDTG 103 (178)
T ss_dssp HHHHHCCTTCEEEECC
T ss_pred hhhhhccccceecccC
Confidence 6665554445655544
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.51 E-value=0.4 Score=44.44 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=39.0
Q ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHH
Q psy4557 710 FGNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLE 754 (958)
Q Consensus 710 ~~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~ 754 (958)
|.-+++||.++|.|.|.=.|+-+|..|+++|++|.++.+....+.
T Consensus 33 ~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~ 77 (170)
T d1a4ia1 33 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD 77 (170)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH
T ss_pred hCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHH
Confidence 334689999999999999999999999999999999877655444
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.20 E-value=0.24 Score=45.00 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=28.1
Q ss_pred CceEEeccccchHHHHHHHHhcCC---CCeEEEeccCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDT---KCTLFCPVRET 354 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~---~~~V~clvR~~ 354 (958)
++|-|-||||++|.-+++.|+++. ...++++.+.+
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~ 39 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ 39 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccc
Confidence 478999999999999999899764 35678776554
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=85.88 E-value=1.7 Score=38.83 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=65.5
Q ss_pred CceEEeccccchHHHHHHHHhcCCCC-eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~-~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
.+|-|.|+ |++|+++...|+.++-. ++....+..+ .+.....+.... ..+.....+..++
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~--~~~g~a~Dl~~a-------~~~~~~~~i~~~~--------- 62 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKE--RVEAEVLDMQHG-------SSFYPTVSIDGSD--------- 62 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHH--HHHHHHHHHHHT-------GGGSTTCEEEEES---------
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccc--cchhHHHHHHhc-------cccCCCceeecCC---------
Confidence 36889997 99999999999877654 4554443321 121111111110 0111222332222
Q ss_pred cHHHHHHHhcccCEEEEcccccC-cccChHHHHhhhHHHHHHHHHhhccCCCccEEEE
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVN-LILPYNALYKSNVLATKNLIEFSFLNKIKSFHYV 455 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~-~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~v 455 (958)
+|+. ..+.|+|+=+|+... ...+..++...|+.=.+++.+-..+...+.++.+
T Consensus 63 ---~~~~-~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~iv 116 (143)
T d1llda1 63 ---DPEI-CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYML 116 (143)
T ss_dssp ---CGGG-GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred ---CHHH-hhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEE
Confidence 1322 346899999998653 3456677888999888888766555555555443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.57 E-value=3.2 Score=37.72 Aligned_cols=82 Identities=10% Similarity=0.144 Sum_probs=54.6
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCC--eEEEEecChhhHHHHHHHhh------------cCCCcEEEEEecCCCHHHHHHH
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGA--KVVAVARRIDRLENLKTSLQ------------NAPGSIIVKKLDVTIENDVKKV 783 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga--~Vi~~~r~~~~l~~~~~~l~------------~~~~~~~~~~~Dvs~~~~v~~~ 783 (958)
.+.|.|. |-||.++|+.|.+.|. +|+..+|+.+.++.+++.-. .....+.++. +..+++.+.
T Consensus 3 ~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila---~p~~~~~~v 78 (171)
T d2g5ca2 3 NVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS---SPVRTFREI 78 (171)
T ss_dssp EEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC---SCHHHHHHH
T ss_pred EEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc---CCchhhhhh
Confidence 4677775 8999999999999996 68888999888877665321 0011222222 345678888
Q ss_pred HHHHHHHcCCccEEEEcccc
Q psy4557 784 VREVLAELGHIDILVNNAGV 803 (958)
Q Consensus 784 ~~~~~~~~g~iDilInnAG~ 803 (958)
++++......=.+++..+++
T Consensus 79 l~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 79 AKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp HHHHHHHSCTTCEEEECCSC
T ss_pred hhhhhccccccccccccccc
Confidence 88887766544455555554
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.19 E-value=4 Score=36.45 Aligned_cols=112 Identities=10% Similarity=0.095 Sum_probs=65.4
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCC-eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGL 397 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~-~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL 397 (958)
+++|-|.|| |++|+++...|+.++-. ++..+.+..+. +.....+..... ......+.+..+|..
T Consensus 6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~--~~g~a~Dl~~~~------~~~~~~~~~~~~d~~------ 70 (148)
T d1ldna1 6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESK--AIGDAMDFNHGK------VFAPKPVDIWHGDYD------ 70 (148)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH--HHHHHHHHHHHT------TSSSSCCEEEECCGG------
T ss_pred CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeecccc--ccchhccHhhCc------cccCCCeEEEECCHH------
Confidence 457999997 99999999999876544 45555443221 111111211110 001223444444431
Q ss_pred CcHHHHHHHhcccCEEEEccccc-CcccChHHHHhhhHHHHHHHHHhhccCCCccEE
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFV-NLILPYNALYKSNVLATKNLIEFSFLNKIKSFH 453 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v-~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~ 453 (958)
...+.|+|+-+|+.. .......++...|+.=.+++.+-..+...+.++
T Consensus 71 --------~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ 119 (148)
T d1ldna1 71 --------DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLF 119 (148)
T ss_dssp --------GTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEE
T ss_pred --------HhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence 134689999988864 334556677788998888887665544444443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.88 E-value=1.1 Score=40.89 Aligned_cols=84 Identities=12% Similarity=0.121 Sum_probs=51.2
Q ss_pred EEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhc-------CCCcEEEEEecCCCHHHHHHHHHH---HH
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQN-------APGSIIVKKLDVTIENDVKKVVRE---VL 788 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~-------~~~~~~~~~~Dvs~~~~v~~~~~~---~~ 788 (958)
+-|. |.+-+|.++|+.|+++|++|.+.+|+.++.+.+...-.. ......++..-+.+...++.++.. +.
T Consensus 4 Ig~I-GlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~ 82 (162)
T d3cuma2 4 IAFI-GLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLL 82 (162)
T ss_dssp EEEE-CCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHH
T ss_pred EEEE-EEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccccc
Confidence 3344 557899999999999999999999998887766532210 001122333445666666666543 33
Q ss_pred HHcCCccEEEEcccc
Q psy4557 789 AELGHIDILVNNAGV 803 (958)
Q Consensus 789 ~~~g~iDilInnAG~ 803 (958)
....+=+++|.+.-+
T Consensus 83 ~~l~~g~iiid~st~ 97 (162)
T d3cuma2 83 AHIAPGTLVLECSTI 97 (162)
T ss_dssp HHSCTTCEEEECSCC
T ss_pred ccCCCCCEEEECCCC
Confidence 333333466655444
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.52 E-value=2.6 Score=37.92 Aligned_cols=109 Identities=17% Similarity=0.065 Sum_probs=58.3
Q ss_pred cCceEEeccccchHHHHHHHHhcCCC-----CeEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTK-----CTLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLE 393 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~-----~~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~ 393 (958)
+.+|.|+||+|.+|++++..|+...- ....+|..........+.+..-+..- .. ...+......|
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~--~~----~~~~~~~~~~~---- 72 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDC--AL----PLLKDVIATDK---- 72 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHT--CC----TTEEEEEEESC----
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccc--cc----ccccccccCcc----
Confidence 34799999999999999988875321 12233332222111111111111100 00 00111111111
Q ss_pred CCCCCcHHHHHHHhcccCEEEEccccc-CcccChHHHHhhhHHHHHHHHHhhcc
Q psy4557 394 MLGLKNQDEYVSLSYEIDMIIHAAAFV-NLILPYNALYKSNVLATKNLIEFSFL 446 (958)
Q Consensus 394 ~lGL~~~~~~~~l~~~vd~IiH~AA~v-~~~~~~~~~~~~NV~gt~~ll~~a~~ 446 (958)
.| ....+.|+||=+|+.. ....+..++...|+.=.+++.....+
T Consensus 73 --------~~-~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k 117 (154)
T d5mdha1 73 --------EE-IAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDK 117 (154)
T ss_dssp --------HH-HHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred --------cc-cccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHh
Confidence 22 3456889999988864 33455667788899888888755433
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.47 E-value=0.53 Score=43.67 Aligned_cols=38 Identities=32% Similarity=0.284 Sum_probs=35.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecC
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARR 749 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~ 749 (958)
.+++||.++|.|-|.=.|+-+|..|+++|++|..+.++
T Consensus 25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~ 62 (171)
T d1edza1 25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN 62 (171)
T ss_dssp CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence 47999999999999999999999999999999987654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=84.34 E-value=1.8 Score=44.28 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=57.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCC-CcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAP-GSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
...+||.||=.+++.| |.++ .+++.|++|+.++.+...++.+++.+...+ ..+.++..|+.+ +.+.....
T Consensus 142 ~~~~g~rVLDl~~gtG-~~s~--~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~------~~~~~~~~ 212 (318)
T d1wxxa2 142 ERFRGERALDVFSYAG-GFAL--HLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFD------LLRRLEKE 212 (318)
T ss_dssp GGCCEEEEEEETCTTT-HHHH--HHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHH------HHHHHHHT
T ss_pred HHhCCCeeeccCCCCc-HHHH--HHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHH------HhhhhHhh
Confidence 3468999997775554 3333 245567899999999999988887776544 356777777532 33444445
Q ss_pred cCCccEEEEccccC
Q psy4557 791 LGHIDILVNNAGVM 804 (958)
Q Consensus 791 ~g~iDilInnAG~~ 804 (958)
.+++|++|.+....
T Consensus 213 ~~~fD~Vi~DpP~~ 226 (318)
T d1wxxa2 213 GERFDLVVLDPPAF 226 (318)
T ss_dssp TCCEEEEEECCCCS
T ss_pred hcCCCEEEEcCCcc
Confidence 56899999997554
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=84.10 E-value=0.99 Score=44.14 Aligned_cols=77 Identities=13% Similarity=0.044 Sum_probs=59.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Q psy4557 713 TLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELG 792 (958)
Q Consensus 713 ~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 792 (958)
..+++.+|=.|++.|. ++..|+++|.+|+.++.+++.++.+++.....+.++.++..|+.+.+ ..+
T Consensus 35 ~~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 100 (246)
T d1y8ca_ 35 NLVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-----------INR 100 (246)
T ss_dssp TCCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-----------CSC
T ss_pred CCCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhc-----------ccc
Confidence 3467789999999886 78899999999999999998888877777666667778888876432 135
Q ss_pred CccEEEEcccc
Q psy4557 793 HIDILVNNAGV 803 (958)
Q Consensus 793 ~iDilInnAG~ 803 (958)
++|++++..+.
T Consensus 101 ~fD~i~~~~~~ 111 (246)
T d1y8ca_ 101 KFDLITCCLDS 111 (246)
T ss_dssp CEEEEEECTTG
T ss_pred cccccceeeee
Confidence 78988865443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=83.86 E-value=0.79 Score=43.57 Aligned_cols=72 Identities=25% Similarity=0.322 Sum_probs=53.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCC-eEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGA-KVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAE 790 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga-~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 790 (958)
..+.||+|+=-|+++|+ ++..++..|+ +|+.+..+.+.++.+.+.+ ..+.++.+|+.+.
T Consensus 45 ~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~N~----~~~~~~~~D~~~l------------- 104 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKRNC----GGVNFMVADVSEI------------- 104 (197)
T ss_dssp TSSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHHHC----TTSEEEECCGGGC-------------
T ss_pred CCCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHHcc----ccccEEEEehhhc-------------
Confidence 57899999999988883 3445777886 6999999988777665544 2456777887532
Q ss_pred cCCccEEEEcccc
Q psy4557 791 LGHIDILVNNAGV 803 (958)
Q Consensus 791 ~g~iDilInnAG~ 803 (958)
-+++|++|.|--.
T Consensus 105 ~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 105 SGKYDTWIMNPPF 117 (197)
T ss_dssp CCCEEEEEECCCC
T ss_pred CCcceEEEeCccc
Confidence 3689999998543
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=83.73 E-value=2.9 Score=37.14 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=64.0
Q ss_pred CceEEeccccchHHHHHHHHhcCCCC-eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~-~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
++|-|.|+ |.+|+.+...|+.++-. +++...+..+...+. ..+. .+ ...+.....+..||.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~--a~Dl---~~----~~~~~~~~~~~~~~~-------- 63 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGE--AMDI---NH----GLPFMGQMSLYAGDY-------- 63 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHH--HHHH---TT----SCCCTTCEEEC--CG--------
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCcccee--eeee---cc----CcccCCCeeEeeCcH--------
Confidence 36888897 99999999998877654 577666554422221 1111 11 011223444444432
Q ss_pred cHHHHHHHhcccCEEEEcccccC-cccChHHHHhhhHHHHHHHHHhhccCCCccEEEE
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVN-LILPYNALYKSNVLATKNLIEFSFLNKIKSFHYV 455 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~-~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~v 455 (958)
.. ..+.|+|+=+|+... ...+..++...|+.=.+++.+...+...+.++.+
T Consensus 64 -----~~-~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~iv 115 (142)
T d1y6ja1 64 -----SD-VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 115 (142)
T ss_dssp -----GG-GTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred -----HH-hCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEE
Confidence 11 357899998888543 3455667788899988888876665555555444
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=83.49 E-value=0.55 Score=41.23 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=49.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
|.++|.|. +.+|..++++|. |..|+++..+++..+.+.. . ...++..|.++++.++++ ...+-+.
T Consensus 1 kHivI~G~-g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~----~--~~~~i~Gd~~~~~~L~~a------~i~~A~~ 65 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLRELR--GSEVFVLAEDENVRKKVLR----S--GANFVHGDPTRVSDLEKA------NVRGARA 65 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTSC--GGGEEEEESCTTHHHHHHH----T--TCEEEESCTTSHHHHHHT------TCTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHc--CCCCEEEEcchHHHHHHHh----c--CccccccccCCHHHHHHh------hhhcCcE
Confidence 57888885 778999999994 5678888888887765532 2 355777999997665432 3445677
Q ss_pred EEEcc
Q psy4557 797 LVNNA 801 (958)
Q Consensus 797 lInnA 801 (958)
+|...
T Consensus 66 vi~~~ 70 (129)
T d2fy8a1 66 VIVNL 70 (129)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 77544
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=83.41 E-value=2.2 Score=40.48 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=55.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCccE
Q psy4557 717 KVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGHIDI 796 (958)
Q Consensus 717 k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 796 (958)
..+|=.|++.|. ++..|++.|++|+.++.+.+.++.+++...+.+.....+..|..+.. ...+.+|+
T Consensus 39 ~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~----------~~~~~fD~ 105 (226)
T d1ve3a1 39 GKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS----------FEDKTFDY 105 (226)
T ss_dssp CEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC----------SCTTCEEE
T ss_pred CEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhcccccccccccccccccc----------ccCcCceE
Confidence 468999999887 77889999999999999998888887777665556666777776532 11257899
Q ss_pred EEEcccc
Q psy4557 797 LVNNAGV 803 (958)
Q Consensus 797 lInnAG~ 803 (958)
++.+..+
T Consensus 106 I~~~~~l 112 (226)
T d1ve3a1 106 VIFIDSI 112 (226)
T ss_dssp EEEESCG
T ss_pred EEEecch
Confidence 8877544
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.32 E-value=1 Score=41.15 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=36.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhh
Q psy4557 711 GNTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDR 752 (958)
Q Consensus 711 ~~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~ 752 (958)
...|.||+++|.|=+ -||+.+|+.+...|++|+++..++.+
T Consensus 19 ~~~l~Gk~v~V~GyG-~iG~g~A~~~rg~G~~V~v~e~dp~~ 59 (163)
T d1li4a1 19 DVMIAGKVAVVAGYG-DVGKGCAQALRGFGARVIITEIDPIN 59 (163)
T ss_dssp CCCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CceecCCEEEEeccc-cccHHHHHHHHhCCCeeEeeecccch
Confidence 356899999999865 69999999999999999999988643
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=83.06 E-value=1.8 Score=42.66 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 714 LANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 714 l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
..|+.++=.|+++|+ ++..+++.|++|+.++.+.+.++.+.+.....+....++..|+. .. -..++
T Consensus 119 ~~g~~VLDiGcGsG~---l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~----------~~-~~~~~ 184 (254)
T d2nxca1 119 RPGDKVLDLGTGSGV---LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLE----------AA-LPFGP 184 (254)
T ss_dssp CTTCEEEEETCTTSH---HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHH----------HH-GGGCC
T ss_pred CccCEEEEcccchhH---HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEecccc----------cc-ccccc
Confidence 368899999999996 33467788999999999999998888777655555556655532 11 12468
Q ss_pred ccEEEEc
Q psy4557 794 IDILVNN 800 (958)
Q Consensus 794 iDilInn 800 (958)
.|+++.|
T Consensus 185 fD~V~an 191 (254)
T d2nxca1 185 FDLLVAN 191 (254)
T ss_dssp EEEEEEE
T ss_pred cchhhhc
Confidence 9999987
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.00 E-value=1.1 Score=42.22 Aligned_cols=83 Identities=13% Similarity=0.278 Sum_probs=62.8
Q ss_pred CCCEEE-EEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHhhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Q psy4557 715 ANKVIF-VTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSLQNAPGSIIVKKLDVTIENDVKKVVREVLAELGH 793 (958)
Q Consensus 715 ~~k~~l-ITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 793 (958)
.|.+++ +|-|+||.-.++.+.+ . +++|+.++++++.++...+.+...+.++.++..+.++...+ .+.. ..+.
T Consensus 23 ~~~~~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~---~~~~--~~~~ 95 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL---LKTL--GIEK 95 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH---HHHT--TCSC
T ss_pred CCCEEEEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHH---HHHc--CCCC
Confidence 344444 7889999999998887 3 47999999999999988888877777888888887664332 2211 2468
Q ss_pred ccEEEEccccC
Q psy4557 794 IDILVNNAGVM 804 (958)
Q Consensus 794 iDilInnAG~~ 804 (958)
+|.++..-|+.
T Consensus 96 vdgIl~DlGvS 106 (192)
T d1m6ya2 96 VDGILMDLGVS 106 (192)
T ss_dssp EEEEEEECSCC
T ss_pred cceeeeccchh
Confidence 99999999985
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=82.94 E-value=4.7 Score=35.84 Aligned_cols=115 Identities=11% Similarity=0.043 Sum_probs=63.8
Q ss_pred CceEEeccccchHHHHHHHHhcCCCC-eEEEeccCCChhhHHHHHHHHHHHhccccccccccCceEEecccCCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKC-TLFCPVRETPNKTLLQRLEDIMLKYHMSLDLNNYTDRLILVKSDLSLEMLGLK 398 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~-~V~clvR~~~~~~~~~rl~~~~~~~~~~~~~~~~~~ri~~v~gDl~~~~lGL~ 398 (958)
++|-|.|+ |.+|+.+...|+.++-. +++...+. .+.+.....+...... .......+..+|.+
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~--~~~~~g~~~Dl~~a~~------~~~~~~~~~~~d~~------- 65 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDAN--EAKVKADQIDFQDAMA------NLEAHGNIVINDWA------- 65 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSS--HHHHHHHHHHHHHHGG------GSSSCCEEEESCGG-------
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecc--cchhhhHHHhhhcccc------ccCCccceeccCHH-------
Confidence 57889995 99999999998876543 45443332 1211111112111110 11123344445532
Q ss_pred cHHHHHHHhcccCEEEEcccccCc-----ccChHHHHhhhHHHHHHHHHhhccCCCccEEEEec
Q psy4557 399 NQDEYVSLSYEIDMIIHAAAFVNL-----ILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVST 457 (958)
Q Consensus 399 ~~~~~~~l~~~vd~IiH~AA~v~~-----~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST 457 (958)
. ..+.|+||=+|+.... ..+..++...|+.=.+++.+-..+...+.++.+-|
T Consensus 66 ------~-l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 66 ------A-LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp ------G-GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ------H-hccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 1 3578999999885431 12233456789888888887666665566655543
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=82.33 E-value=2.6 Score=38.23 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=27.4
Q ss_pred cCceEEeccccchHHHHHHHHhcCCCCeEEEeccC
Q psy4557 319 YGNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRE 353 (958)
Q Consensus 319 ~~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~ 353 (958)
.++|+|-|| |++|+++++.|.++ +.+|++..|.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~-g~~V~v~dr~ 34 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDS-GIKVTVACRT 34 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTT-TCEEEEEESC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEECC
Confidence 368999887 99999999988866 4588888885
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.26 E-value=1.4 Score=38.28 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=29.8
Q ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecCh
Q psy4557 716 NKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRI 750 (958)
Q Consensus 716 ~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~ 750 (958)
.|.++|.||+- ||.++|..|++.|.+|.++.|+.
T Consensus 22 pk~vvIvGgG~-iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 22 PGRSVIVGAGY-IAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp CSEEEEECCSH-HHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEEcCCc-cHHHHHHHHhcCCcEEEEEeecc
Confidence 36788888765 99999999999999999998864
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.22 E-value=0.78 Score=46.46 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.3
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEecC
Q psy4557 724 SSSGIGEQLVKDLVTLGAKVVAVARR 749 (958)
Q Consensus 724 as~GIG~aia~~la~~Ga~Vi~~~r~ 749 (958)
.||-.|.++|+.|..+|+.|+++.+.
T Consensus 44 SSGk~G~alA~~~~~~Ga~V~li~g~ 69 (290)
T d1p9oa_ 44 SSGRRGATSAEAFLAAGYGVLFLYRA 69 (290)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CchHHHHHHHHHHHHcCCEEEEEecC
Confidence 45668999999999999999998654
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| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=81.81 E-value=0.6 Score=42.61 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=30.7
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhH
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRL 753 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l 753 (958)
.+.|.|+ |.||..+|..|++.|+.|.+++|+.++.
T Consensus 2 kI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~ 36 (167)
T d1ks9a2 2 KITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPY 36 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred EEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence 4677788 9999999999999999999999987643
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| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=81.55 E-value=4.6 Score=35.73 Aligned_cols=114 Identities=10% Similarity=-0.001 Sum_probs=63.3
Q ss_pred CceEEeccccchHHHHHHHHhcCCCCeEEEeccCCChhhHHH-HHHHHHHHhccccccccccCceEEe-cccCCCCCCCC
Q psy4557 320 GNVLLTGVTGYLGIHLLQKFLVDTKCTLFCPVRETPNKTLLQ-RLEDIMLKYHMSLDLNNYTDRLILV-KSDLSLEMLGL 397 (958)
Q Consensus 320 ~~VllTGaTGflGs~ll~~LL~~~~~~V~clvR~~~~~~~~~-rl~~~~~~~~~~~~~~~~~~ri~~v-~gDl~~~~lGL 397 (958)
++|-|.|+ |.+|+.+...|+.++-..+.++....+...+.. .+.+..... ..+..+. .+|.
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~---------~~~~~i~~~~d~------- 64 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIE---------GFDVRVTGTNNY------- 64 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHH---------TCCCCEEEESCG-------
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhcccccc---------CCCCEEEecCcH-------
Confidence 46888996 999999998887765557777765544322211 111111100 1122222 2332
Q ss_pred CcHHHHHHHhcccCEEEEccccc-CcccChHHHHhhhHHHHHHHHHhhccCCCccEEEEec
Q psy4557 398 KNQDEYVSLSYEIDMIIHAAAFV-NLILPYNALYKSNVLATKNLIEFSFLNKIKSFHYVST 457 (958)
Q Consensus 398 ~~~~~~~~l~~~vd~IiH~AA~v-~~~~~~~~~~~~NV~gt~~ll~~a~~~~~k~~~~vST 457 (958)
.. ..+.|+||=+|+.. ....+..++...|+.-.++++.-..+...+.++.+-|
T Consensus 65 ------~~-~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 65 ------AD-TANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp ------GG-GTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred ------HH-hcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 22 35689999898864 3445566777889998889887666655555555543
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| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=80.90 E-value=1.4 Score=42.76 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=41.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHh
Q psy4557 712 NTLANKVIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL 760 (958)
Q Consensus 712 ~~l~~k~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l 760 (958)
.+|+||+++|-|- +-.|..+|+.|.+.|++|++++.+...++.+..+.
T Consensus 35 ~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~ 82 (230)
T d1leha1 35 DSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE 82 (230)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhc
Confidence 5699999999985 56899999999999999999999988887776654
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| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=80.89 E-value=0.62 Score=44.07 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=34.6
Q ss_pred EEEEEcCCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHH
Q psy4557 718 VIFVTGSSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTS 759 (958)
Q Consensus 718 ~~lITGas~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~ 759 (958)
.+.|.||+. .|.++|..|++.|++|.+.+|+.+.++++.+.
T Consensus 9 KI~ViGaG~-wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~ 49 (189)
T d1n1ea2 9 KAVVFGSGA-FGTALAMVLSKKCREVCVWHMNEEEVRLVNEK 49 (189)
T ss_dssp EEEEECCSH-HHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH
T ss_pred eEEEECCCH-HHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc
Confidence 466777654 89999999999999999999999888877654
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| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=80.62 E-value=0.98 Score=40.78 Aligned_cols=41 Identities=20% Similarity=0.424 Sum_probs=34.4
Q ss_pred EEEEcCCchHHHHHHHHHHHcC-CeEEEEecChhhHHHHHHHh
Q psy4557 719 IFVTGSSSGIGEQLVKDLVTLG-AKVVAVARRIDRLENLKTSL 760 (958)
Q Consensus 719 ~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~l~~~~~~l 760 (958)
+.+.|+ |-+|.++++.|.+.| .+|++.+|+.++++++.++.
T Consensus 3 I~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~ 44 (152)
T d1yqga2 3 VYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL 44 (152)
T ss_dssp EEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT
T ss_pred EEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc
Confidence 345555 899999999999988 89999999999988887654
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| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.57 E-value=0.86 Score=41.28 Aligned_cols=37 Identities=11% Similarity=0.277 Sum_probs=33.5
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEecChhhHHHHHHHh
Q psy4557 724 SSSGIGEQLVKDLVTLGAKVVAVARRIDRLENLKTSL 760 (958)
Q Consensus 724 as~GIG~aia~~la~~Ga~Vi~~~r~~~~l~~~~~~l 760 (958)
|.|-+|.++++.|.+.|++|++..|+.++.+++.+++
T Consensus 7 G~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~ 43 (152)
T d2ahra2 7 GVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL 43 (152)
T ss_dssp CCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc
Confidence 6788999999999999999999999999988887665
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