Diaphorina citri psyllid: psy4929

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630---
MLLVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQIRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIEPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIRWSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRGLIEGAVIREVLLFIVPKSKRQDKR
cccHHHHHHHHHcccccccEEEEEEcccccEECccccEEEEcccHHHHHHHccccccccccEEccccccHHHHHcccccccccccHHHHHHHHHHHcccccccHHHHHHcccEEEEEEcEEccccccccCEEEEEEEEEEEccccccccccCEECcccccccccccccccccccccEEEEEccccccccccHHHHHHHccccccccccHHHHHHHHcccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHcccccccccccccHHHHcccHHcccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccccccccccHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEcccEEEccccccccccccEEEEEEcEEEEEEEEEEEEcccccccc
*LLVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQIRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSS****PSAP*SRCRSRLSANPGIEPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIRWSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRGLIEGAVIREVLLFIV*********
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MLLVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQIRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIEPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIRWSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRGLIEGAVIREVLLFIVPKSKRQDKR

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable ribosome biogenesis protein RLP24 Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles.confidentQ9VGN9

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0022625 [CC]cytosolic large ribosomal subunitprobableGO:0005737, GO:0005575, GO:0005622, GO:0022626, GO:0005840, GO:0043232, GO:0005829, GO:0044464, GO:0043229, GO:0005623, GO:0044391, GO:0044446, GO:0044444, GO:0044445, GO:0043226, GO:0044424, GO:0015934, GO:0043228, GO:0030529, GO:0032991, GO:0044422
GO:0003674 [MF]molecular_functionprobable
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3NO8, chain A
Confidence level:very confident
Coverage over the Query: 83-186
View the alignment between query and template
View the model in PyMOL
Template: 2VKP, chain A
Confidence level:very confident
Coverage over the Query: 12-110
View the alignment between query and template
View the model in PyMOL
Template: 3NO8, chain A
Confidence level:very confident
Coverage over the Query: 584-623
View the alignment between query and template
View the model in PyMOL
Template: 3HVE, chain A
Confidence level:very confident
Coverage over the Query: 3-87,323-356,405-479,491-528
View the alignment between query and template
View the model in PyMOL
Template: 2Z8H, chain A
Confidence level:confident
Coverage over the Query: 203-256,274-275,286-356
View the alignment between query and template
View the model in PyMOL
Template: 2ZKR, chain u
Confidence level:confident
Coverage over the Query: 168-214
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
3izc, chain Zvery confident Alignment | Template Structure