Psyllid ID: psy4929

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630---
MLLVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQIRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIEPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIRWSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRGLIEGAVIREVLLFIVPKSKRQDKR
cccHHHHHHHHHcccccccEEEEEEcccccEEEccccEEEEcccHHHHHHHccccccccccEEcccccHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHcccEEEEEEcEEccccccccEEEEEEEEEEEEccccccccccEEEEcccccccccccccccccccccEEEEEccccccccccHHHHHHHccccccccccHHHHHHHHHccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHcccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHcccccccccccHHHHHccHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccccccccccHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEcccEEEccccccccccccEEEEEEcEEEEEEEEEEEEcccccccc
cccHHHHHHHHHccHHHHHEEEEcccHHHHHcccccccEEEcccHHHHHHHHcccccccccEEccccccHHHHHHHHHHccccEEEEEEEEEEcccccccccccEEEEEEccEEEEEEEEEEccccccccEEEEEEEEEEcccEEEEEccccEccccccccEEEEEcccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHcccccccEEEccccccccccccccHHHHHcccccccHHHcccccccEEEEEcHHcHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHccHHHccccccHHEEEEHHHccccccccccccccEEcHHHHHHHEEEEEcccccccccccccccccccccEEEEEEEEEEccccEcccccEEEEEEcccccEEEEEEEEEEccccccc
MLLVKERFAFMFNNEILCDVHFIVGRetelqripahrFVLSVGSVVFDAMfngtlatrsdeielpdvepAAFLALLRCSMTGKEQVVHRFQHiesrwgysgtsdrirfsvDRRIFVVGFGlygcihgpteYDVQMQLVRTAngkviagnrtsfacdgstftsrvmfkepvevmpnisyTACATLKIFRFCRSKCHklfkrkknprktaWTKAYRKVrgkdlavdpsfefakrrnvplkydrEFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQIRESNLLHGKQILLTtarlfdepqlAALCLDTIdkntpdalaadgftdKVVTLssfsssdgrkpsapdsrcrsrlsanpgiepsawqanltyhcaparlfdepqLAALCLDTIdkntpdalaadgftdvdRDTLCAVLERDTLRIREAKLFQAVIRWSEaectrqslpitpenqravlgpsltlvrfplmsveefaagpaqsglledsQLVRLFLYFHVeefaagpaqsglledsQLVRLFLYFhvnpkpaipffdgprcsmtgkeqVVHRFQHiesrwgysgtsdRIRGLIEGAVIREVLLFIVpkskrqdkr
MLLVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLatrsdeielpdVEPAAFLALLRCSMTGKEQVVHRfqhiesrwgysgtsdrirfSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANgkviagnrtsfacdgstfTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKChklfkrkknprktawtkayrkvrgkdlavdpsfefakrrnvplkydrefwNKTVEAIKkvehiktkrhnlylaqrlrkarevetardikavqrdiailndpteviraKKKKMVEAGIVEEIHEMQIRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTlssfsssdgrkpsapdsrcrSRLSANPGIEPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDAlaadgftdvdRDTLCAVLERDTLRIREAKLFQAVIRWSEAectrqslpitpenqravlgPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFqhiesrwgysgtsDRIRGLIEGAVIREvllfivpkskrqdkr
MLLVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQIRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIEPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIRWSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRGLIEGAVIREVLLFIVPKSKRQDKR
**LVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQIRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVT********************************AWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIRWSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRGLIEGAVIREVLLFIV*********
*LLVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCH**********KTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRHN*****************************************************EM*IRESNLLHGKQILLTTARLFDEPQLAALCLDTID**TPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIEPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIRWSEAECT***********RAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAA**********SQLVRLFLYF***************CSMTGKEQVVHRFQHIESRWGYSGTSDRIRGLIEGAVIREVLLF***********
MLLVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQIRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTL**********************SANPGIEPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIRWSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRGLIEGAVIREVLLFIVPKSKRQDKR
MLLVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQIRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSS****PSAP*SRCRSRLSANPGIEPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIRWSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRGLIEGAVIREVLLFIVPKSK*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLLVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQIRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIEPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIRWSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIESRWGYSGTSDRIRGLIEGAVIREVLLFIVPKSKRQDKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query633 2.2.26 [Sep-21-2011]
Q9H0C5482 BTB/POZ domain-containing no N/A 0.296 0.390 0.530 1e-62
Q9BX70 525 BTB/POZ domain-containing no N/A 0.262 0.316 0.606 2e-62
P58544 488 BTB/POZ domain-containing no N/A 0.262 0.340 0.585 2e-61
Q9VGN9191 Probable ribosome biogene yes N/A 0.187 0.623 0.579 2e-36
Q9UHA3163 Probable ribosome biogene no N/A 0.203 0.791 0.518 8e-35
Q99L28163 Probable ribosome biogene no N/A 0.203 0.791 0.518 1e-34
Q5RF04163 Probable ribosome biogene no N/A 0.203 0.791 0.511 2e-34
Q3SZ12163 Probable ribosome biogene no N/A 0.203 0.791 0.511 2e-34
Q6P6G7163 Probable ribosome biogene no N/A 0.203 0.791 0.503 5e-34
Q7ZTZ2161 Probable ribosome biogene no N/A 0.203 0.801 0.533 2e-33
>sp|Q9H0C5|BTBD1_HUMAN BTB/POZ domain-containing protein 1 OS=Homo sapiens GN=BTBD1 PE=1 SV=1 Back     alignment and function desciption
 Score =  241 bits (614), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/230 (53%), Positives = 154/230 (66%), Gaps = 42/230 (18%)

Query: 416 ARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIR 475
           ARLFDEPQLA+LCLDTIDK+T DA++A+GFTD+D DTLCAVLERDTL IRE++LF AV+R
Sbjct: 187 ARLFDEPQLASLCLDTIDKSTMDAISAEGFTDIDIDTLCAVLERDTLSIRESRLFGAVVR 246

Query: 476 WSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLY 535
           W+EAEC RQ LP+T  N++ VLG +L+L+RFPLM++EEFAAGPAQSG+L D ++V     
Sbjct: 247 WAEAECQRQQLPVTFGNKQKVLGKALSLIRFPLMTIEEFAAGPAQSGILSDREVV----- 301

Query: 536 FHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIE 595
                                  LFL+F VNPKP + + D PRC + GKE  ++RFQ +E
Sbjct: 302 ----------------------NLFLHFTVNPKPRVEYIDRPRCCLRGKECCINRFQQVE 339

Query: 596 SRWGYSGTSDRIR---------------GLIEGAVIREVLLFIVPKSKRQ 630
           SRWGYSGTSDRIR               G I G    +V + I+   K+Q
Sbjct: 340 SRWGYSGTSDRIRFTVNRRISIVGFGLYGSIHGPTDYQVNIQIIEYEKKQ 389
Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Homo sapiens (taxid: 9606)
>sp|Q9BX70|BTBD2_HUMAN BTB/POZ domain-containing protein 2 OS=Homo sapiens GN=BTBD2 PE=1 SV=1 Back     alignment and function description
>sp|P58544|BTBD1_MOUSE BTB/POZ domain-containing protein 1 OS=Mus musculus GN=Btbd1 PE=2 SV=3 Back     alignment and function description
>sp|Q9VGN9|RLP24_DROME Probable ribosome biogenesis protein RLP24 OS=Drosophila melanogaster GN=RpL24-like PE=1 SV=1 Back     alignment and function description
>sp|Q9UHA3|RLP24_HUMAN Probable ribosome biogenesis protein RLP24 OS=Homo sapiens GN=RSL24D1 PE=1 SV=1 Back     alignment and function description
>sp|Q99L28|RLP24_MOUSE Probable ribosome biogenesis protein RLP24 OS=Mus musculus GN=Rsl24d1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RF04|RLP24_PONAB Probable ribosome biogenesis protein RLP24 OS=Pongo abelii GN=RSL24D1 PE=2 SV=1 Back     alignment and function description
>sp|Q3SZ12|RLP24_BOVIN Probable ribosome biogenesis protein RLP24 OS=Bos taurus GN=RSL24D1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P6G7|RLP24_RAT Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZTZ2|RLP24_DANRE Probable ribosome biogenesis protein RLP24 OS=Danio rerio GN=rsl24d1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query633
332023394579 BTB/POZ domain-containing protein 2 [Acr 0.281 0.307 0.642 1e-64
357627757376 putative BTB domain protein 2 [Danaus pl 0.303 0.510 0.568 1e-63
405971680409 BTB/POZ domain-containing protein 2 [Cra 0.266 0.413 0.627 3e-63
427796673555 Hypothetical protein, partial [Rhipiceph 0.265 0.302 0.635 4e-63
156550011557 PREDICTED: BTB/POZ domain-containing pro 0.265 0.301 0.615 2e-62
148746160336 putative BTB/POZ domain protein [Hydroid 0.266 0.502 0.627 2e-62
395513262422 PREDICTED: BTB/POZ domain-containing pro 0.262 0.393 0.611 3e-62
431922240377 BTB/POZ domain-containing protein 2 [Pte 0.262 0.440 0.611 4e-62
334326746513 PREDICTED: BTB/POZ domain-containing pro 0.262 0.323 0.611 7e-62
109732045377 Btbd2 protein [Mus musculus] 0.262 0.440 0.611 8e-62
>gi|332023394|gb|EGI63639.1| BTB/POZ domain-containing protein 2 [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 144/193 (74%), Gaps = 15/193 (7%)

Query: 416 ARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIR 475
           ARLFDEPQLA++CLDTID+ T DA  ADGFTD+D DTL  VLERDTLR+RE+KLFQAV+R
Sbjct: 271 ARLFDEPQLASVCLDTIDRFTTDAFTADGFTDIDIDTLMIVLERDTLRVRESKLFQAVLR 330

Query: 476 WSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLY 535
           WSEAEC RQ LP+TPENQR VLG +L+LVRFPLMS EEF AGPAQSGLL  S+   + ++
Sbjct: 331 WSEAECVRQQLPVTPENQRLVLGDALSLVRFPLMSKEEFTAGPAQSGLLNYSE-ASIIIF 389

Query: 536 FHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIE 595
           F                 S ++ LF YF +NPKP++ F   PRC MTGKEQ V RFQH +
Sbjct: 390 FQYM--------------SHVLSLFSYFILNPKPSVGFQTMPRCCMTGKEQTVCRFQHTK 435

Query: 596 SRWGYSGTSDRIR 608
           SRWGY GTSDRIR
Sbjct: 436 SRWGYFGTSDRIR 448

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|357627757|gb|EHJ77339.1| putative BTB domain protein 2 [Danaus plexippus] Back     alignment and taxonomy information
>gi|405971680|gb|EKC36503.1| BTB/POZ domain-containing protein 2 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|427796673|gb|JAA63788.1| Hypothetical protein, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|156550011|ref|XP_001604468.1| PREDICTED: BTB/POZ domain-containing protein 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|148746160|dbj|BAF63845.1| putative BTB/POZ domain protein [Hydroides elegans] Back     alignment and taxonomy information
>gi|395513262|ref|XP_003760846.1| PREDICTED: BTB/POZ domain-containing protein 2 [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|431922240|gb|ELK19331.1| BTB/POZ domain-containing protein 2 [Pteropus alecto] Back     alignment and taxonomy information
>gi|334326746|ref|XP_001371955.2| PREDICTED: BTB/POZ domain-containing protein 2-like [Monodelphis domestica] Back     alignment and taxonomy information
>gi|109732045|gb|AAI15684.1| Btbd2 protein [Mus musculus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query633
UNIPROTKB|F1N4P1462 LOC533435 "Uncharacterized pro 0.194 0.266 0.715 5.2e-75
UNIPROTKB|Q9BX70525 BTBD2 "BTB/POZ domain-containi 0.194 0.234 0.715 1.4e-74
UNIPROTKB|Q9H0C5482 BTBD1 "BTB/POZ domain-containi 0.194 0.255 0.707 7.7e-70
RGD|1310962488 Btbd1 "BTB (POZ) domain contai 0.194 0.252 0.699 9.8e-70
UNIPROTKB|F1MZA8482 BTBD1 "Uncharacterized protein 0.194 0.255 0.715 1.6e-69
RGD|1566094412 Btbd2 "BTB (POZ) domain contai 0.194 0.298 0.723 4.2e-69
MGI|MGI:1933765488 Btbd1 "BTB (POZ) domain contai 0.194 0.252 0.691 6.8e-69
UNIPROTKB|F1RIB2486 BTBD1 "Uncharacterized protein 0.194 0.253 0.696 4.7e-68
UNIPROTKB|F1N9D6489 BTBD1 "Uncharacterized protein 0.194 0.251 0.701 7.7e-68
UNIPROTKB|F1P111432 F1P111 "Uncharacterized protei 0.194 0.284 0.707 4.8e-60
UNIPROTKB|F1N4P1 LOC533435 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 465 (168.7 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
 Identities = 88/123 (71%), Positives = 105/123 (85%)

Query:   416 ARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIR 475
             ARLFDEPQLA+LCL+ IDKNT DA+ A+GFTD+D DTL AVLERDTL IRE +LF AV+R
Sbjct:   166 ARLFDEPQLASLCLENIDKNTADAITAEGFTDIDLDTLVAVLERDTLGIREVRLFTAVVR 225

Query:   476 WSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLY 535
             WSEAEC RQ L +TPEN+R VLG +L L+RFPLM++EEFAAGPAQSG+L D ++V LFL+
Sbjct:   226 WSEAECQRQQLQVTPENKRKVLGKALALIRFPLMTIEEFAAGPAQSGILVDREVVSLFLH 285

Query:   536 FHV 538
             F V
Sbjct:   286 FTV 288
GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA
UNIPROTKB|Q9BX70 BTBD2 "BTB/POZ domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H0C5 BTBD1 "BTB/POZ domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1310962 Btbd1 "BTB (POZ) domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZA8 BTBD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1566094 Btbd2 "BTB (POZ) domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1933765 Btbd1 "BTB (POZ) domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RIB2 BTBD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1N9D6 BTBD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P111 F1P111 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VGN9RLP24_DROMENo assigned EC number0.57980.18790.6230yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query633
pfam08005147 pfam08005, PHR, PHR domain 2e-41
COG207566 COG2075, RPL24A, Ribosomal protein L24E [Translati 8e-15
smart00875101 smart00875, BACK, BTB And C-terminal Kelch 4e-13
pfam00651101 pfam00651, BTB, BTB/POZ domain 6e-13
pfam0124671 pfam01246, Ribosomal_L24e, Ribosomal protein L24e 2e-12
cd0047254 cd00472, Ribosomal_L24e_L24, Ribosomal protein L24 2e-12
pfam07707101 pfam07707, BACK, BTB And C-terminal Kelch 3e-08
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 8e-07
PRK0080752 PRK00807, PRK00807, 50S ribosomal protein L24e; Va 1e-06
PTZ00033125 PTZ00033, PTZ00033, 60S ribosomal protein L24; Pro 7e-05
>gnl|CDD|191925 pfam08005, PHR, PHR domain Back     alignment and domain information 
 Score =  146 bits (371), Expect = 2e-41
 Identities = 64/99 (64%), Positives = 78/99 (78%), Gaps = 1/99 (1%)

Query: 88  HRFQHIESRWGYSGTS-DRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVI 146
           +RFQ + SRWGYSGTS D IRFSVDRRIF+VGFGLYG  HGP EY V+++L+    G+V+
Sbjct: 1   NRFQSVGSRWGYSGTSVDAIRFSVDRRIFIVGFGLYGGSHGPGEYQVKLELLHEHTGEVL 60

Query: 147 AGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLK 185
           A N T+F+ DGS+ T RVMF EPVE+ PN+ YTA ATLK
Sbjct: 61  AENDTTFSSDGSSSTFRVMFDEPVEIKPNVWYTARATLK 99

This domain is called PHR as it was original found in the proteins PAM, highwire and RPM. This domain can be duplicated in the highwire, PFAM and PRM sequence. The C-terminal region of the protein BTBD1 includes the PHR domain and is known to interact with Topoisomerase I, an enzyme which relaxes DNA supercoils. Length = 147
>gnl|CDD|224986 COG2075, RPL24A, Ribosomal protein L24E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|110260 pfam01246, Ribosomal_L24e, Ribosomal protein L24e Back     alignment and domain information
>gnl|CDD|100103 cd00472, Ribosomal_L24e_L24, Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24) Back     alignment and domain information
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch Back     alignment and domain information
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|179131 PRK00807, PRK00807, 50S ribosomal protein L24e; Validated Back     alignment and domain information
>gnl|CDD|140068 PTZ00033, PTZ00033, 60S ribosomal protein L24; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 633
KOG2075|consensus521 100.0
KOG4441|consensus 571 100.0
PHA02713 557 hypothetical protein; Provisional 100.0
PHA03098 534 kelch-like protein; Provisional 100.0
PHA02790 480 Kelch-like protein; Provisional 99.98
KOG4350|consensus 620 99.97
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 99.76
PF08005152 PHR: PHR domain ; InterPro: IPR012983 This domain 99.73
KOG2075|consensus521 99.73
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 99.69
KOG0783|consensus1267 99.49
KOG1723|consensus162 99.37
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.32
KOG2838|consensus401 99.25
KOG4591|consensus280 99.23
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.13
KOG1428|consensus 3738 99.09
KOG4682|consensus488 99.03
PTZ00033125 60S ribosomal protein L24; Provisional 98.72
PRK14891131 50S ribosomal protein L24e/unknown domain fusion p 98.07
KOG0783|consensus1267 97.73
PF0124671 Ribosomal_L24e: Ribosomal protein L24e; InterPro: 97.45
COG207566 RPL24A Ribosomal protein L24E [Translation, riboso 97.32
KOG1722|consensus155 96.97
cd0047254 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a 96.72
PRK0080752 50S ribosomal protein L24e; Validated 96.68
KOG2838|consensus401 93.39
PHA02713 557 hypothetical protein; Provisional 93.25
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 91.28
KOG2716|consensus230 90.76
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 90.43
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 89.17
KOG0511|consensus516 88.62
KOG0511|consensus516 87.6
KOG1987|consensus297 85.85
KOG4441|consensus 571 85.45
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 80.16
>KOG2075|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.4e-48  Score=411.90  Aligned_cols=305  Identities=48%  Similarity=0.799  Sum_probs=284.2

Q ss_pred             cHHHHHHHHHhCCCcccEEEEeCCC-ccceEEEeEEeEeeccChhhhhhhcCCCCCC-CCeEEcCCCCHhhhhhhheecc
Q psy4929           3 LVKERFAFMFNNEILCDVHFIVGRE-TELQRIPAHRFVLSVGSVVFDAMFNGTLATR-SDEIELPDVEPAAFLALLRCSM   80 (633)
Q Consensus         3 tl~~~l~~l~~~~~~sDV~f~v~~~-~~~~~f~aHk~VLaa~S~yF~amf~~~~~~~-~~~I~l~dv~~~~f~~lL~ylY   80 (633)
                      |+++++..|++++.++||.|+||++ ++.++|||||.|||..|++|.+||+|++..+ ..+|++||++|.+|.++|+|+|
T Consensus       100 t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flY  179 (521)
T KOG2075|consen  100 TMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLY  179 (521)
T ss_pred             hHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHh
Confidence            7899999999999999999999963 4569999999999999999999999999755 8999999999999999999999


Q ss_pred             cCcchhhhhhhhhccccccCCchhhhhhhhhhhhhhccccccccccCCCcceEEEEEEEecCCceeecCCccccccCCCc
Q psy4929          81 TGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTF  160 (633)
Q Consensus        81 TG~~~~~~rfq~la~~w~y~gl~d~i~f~vdk~I~i~gfglygs~~~~~~y~v~i~l~~~~~~~~l~~~~~~~~~d~~~~  160 (633)
                      ++.+.+.                                                                         
T Consensus       180 sdev~~~-------------------------------------------------------------------------  186 (521)
T KOG2075|consen  180 SDEVKLA-------------------------------------------------------------------------  186 (521)
T ss_pred             cchhhhh-------------------------------------------------------------------------
Confidence            8665410                                                                         


Q ss_pred             ceeeecccceeecCCcEEEEeeeeeeeeccccccccccccccCCccccchhhhhhhhccCCccCcchhhhhccCCCccch
Q psy4929         161 TSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYD  240 (633)
Q Consensus       161 ~~rv~f~~p~~~~~~~~y~~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (633)
                                   |                                                                  
T Consensus       187 -------------~------------------------------------------------------------------  187 (521)
T KOG2075|consen  187 -------------A------------------------------------------------------------------  187 (521)
T ss_pred             -------------H------------------------------------------------------------------
Confidence                         0                                                                  


Q ss_pred             hhhhhhhhhhhhhhccccccchhhHHHHHhhhhhhhhhhhhhhhhhheeeeecCcchhhhhhhhhhhhccceeeeceeee
Q psy4929         241 REFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQI  320 (633)
Q Consensus       241 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  320 (633)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (521)
T KOG2075|consen  188 --------------------------------------------------------------------------------  187 (521)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCcchHHHHHHhhccCchHHHHHHHHhhhhcCchhhhhcccccccccccccCCCCCCCCCCCchhhhcccccCCCC
Q psy4929         321 RESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGI  400 (633)
Q Consensus       321 ~~~~~~~~~~~lL~~Ad~f~~~~l~~~C~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~c~~~L~~~~~~  400 (633)
                        +|+.-    +|.+|++|.++.|.+.|+++|.+.+                                            
T Consensus       188 --dtvi~----tl~~AkKY~VpaLer~CVkflr~~l--------------------------------------------  217 (521)
T KOG2075|consen  188 --DTVIT----TLYAAKKYLVPALERQCVKFLRKNL--------------------------------------------  217 (521)
T ss_pred             --HHHHH----HHHHHHHhhhHHHHHHHHHHHHHhc--------------------------------------------
Confidence              01111    7999999999999999999999998                                            


Q ss_pred             CCCcchhcHHHHHHH-HhhcCChHHHHHHHHHHHhchHHHhcCCCCcccC--HHHHHhhhcCCCccccHHHHHHHHHHHH
Q psy4929         401 EPSAWQANLTYHCAP-ARLFDEPQLAALCLDTIDKNTPDALAADGFTDVD--RDTLCAVLERDTLRIREAKLFQAVIRWS  477 (633)
Q Consensus       401 ~~~l~~~Nc~~il~~-A~~~~~~~L~~~c~~fI~~nf~~v~~seeFl~Ls--~~~L~~iL~sD~L~v~E~~Vf~AvlrW~  477 (633)
                          ...|.|..+.+ |++++.|+|.+.|++.|+.+|++.+..|+|.+++  .++++++|.+|.|.++|..+|+|+++|+
T Consensus       218 ----~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~~dt~~evl~r~~l~~~e~~lfeA~lkw~  293 (521)
T KOG2075|consen  218 ----MADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDSTRDTYEEVLRRDTLEAREFRLFEAALKWA  293 (521)
T ss_pred             ----CChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhHHHHHHHHHhhcccchhHHHHHHHHHhhc
Confidence                23688888888 9999999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             hhhhcccCCCCChhhHHhhHHhhhhcCCCCCCCHHHHhcCCCCCCCCCchHHHHHHhhhhhhhhccCCCCCCCcchhHHH
Q psy4929         478 EAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAAGPAQSGLLEDSQLV  557 (633)
Q Consensus       478 ~~ec~r~~~~~d~~~R~~~l~~LL~~VRfplms~~~L~~~v~~~~ll~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~e~~  557 (633)
                      +.+|.|.+.+.+.++++.+++..|..||||+|..++++..+++++++++                           .|+.
T Consensus       294 ~~e~~rs~~~~~~~~~~~vl~~~l~lirfp~m~~Eefa~~~e~sgIl~d---------------------------~e~~  346 (521)
T KOG2075|consen  294 EAECQRSGGPVNGQNKRKVLGRALSLIRFPFMNIEEFARGVEQSGILTD---------------------------REPL  346 (521)
T ss_pred             cCcchhhcCCCCccchhhhhhheeeeecccccchhhhccCccccCCccc---------------------------cchH
Confidence            9999999999999999999999999999999999999999999999888                           6788


Q ss_pred             HHhhhhccCCCCCccccCCCcccCCCCceeeeccccccCc--ccccCCCccEEEEecceeeeeee
Q psy4929         558 RLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIESR--WGYSGTSDRIRGLIEGAVIREVL  620 (633)
Q Consensus       558 ~l~~~~~~~~k~~~~~~~~~R~g~~~~~~~v~rf~~~~~~--w~~~~~~~~i~~~~~~~~~~~~~  620 (633)
                      ++|+|+++.|+|.+.|..++|+|+..++|+++|||++++|  |+|+|++|+|+|.||+||||.+.
T Consensus       347 ~~F~~~t~~P~P~l~f~~~~ra~ls~~~~~~~rfqr~~~R~q~~~~g~~D~i~F~vd~ri~Iagf  411 (521)
T KOG2075|consen  347 KLFLYFTAAPKPALDFVSRPRAGLSHKKLVRARFQRSETRQQWRYRGTSDRITFQVDRRIFIAGF  411 (521)
T ss_pred             hhhhhhccCCCccccccCcccccccccccchhhhhcchhhhhhccccccccceeeeeeeEEEEec
Confidence            9999999999999999999999999999999999999999  99999999999999999999987

>KOG4441|consensus Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4350|consensus Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>PF08005 PHR: PHR domain ; InterPro: IPR012983 This domain is called PHR as it was original found in the proteins PAM (O75592 from SWISSPROT), highwire (Q9NB71 from SWISSPROT) and RPM (Q17551 from SWISSPROT) Back     alignment and domain information
>KOG2075|consensus Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG1723|consensus Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>KOG4591|consensus Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>KOG4682|consensus Back     alignment and domain information
>PTZ00033 60S ribosomal protein L24; Provisional Back     alignment and domain information
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>PF01246 Ribosomal_L24e: Ribosomal protein L24e; InterPro: IPR000988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1722|consensus Back     alignment and domain information
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24) Back     alignment and domain information
>PRK00807 50S ribosomal protein L24e; Validated Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2716|consensus Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>KOG1987|consensus Back     alignment and domain information
>KOG4441|consensus Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query633
3no8_A176 Crystal Structure Of The Phr Domain From Human Btbd 5e-43
3no8_A 176 Crystal Structure Of The Phr Domain From Human Btbd 2e-09
2vkp_A109 Crystal Structure Of Btb Domain From Btbd6 Length = 7e-16
>pdb|3NO8|A Chain A, Crystal Structure Of The Phr Domain From Human Btbd2 Protein Length = 176 Back     alignment and structure 
Iteration: 1

 Score =  172 bits (436), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 74/109 (67%), Positives = 90/109 (82%)
Query: 77  RCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQ 136
           RC + GKE  ++RFQ +ESRWGYSGTSDRIRFSV++RIFVVGFGLYG IHGPT+Y V +Q
Sbjct: 7   RCCLRGKECSINRFQQVESRWGYSGTSDRIRFSVNKRIFVVGFGLYGSIHGPTDYQVNIQ 66
Query: 137 LVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLK 185
           ++ T +  V+  N T F+CDGS  T RVMFKEPVEV+PN++YTACATLK
Sbjct: 67  IIHTDSNTVLGQNDTGFSCDGSASTFRVMFKEPVEVLPNVNYTACATLK 115
>pdb|3NO8|A Chain A, Crystal Structure Of The Phr Domain From Human Btbd2 Protein Length = 176 Back     alignment and structure
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6 Length = 109 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query633
3no8_A176 BTB/POZ domain-containing protein 2; PHR domain, B 4e-43
3no8_A 176 BTB/POZ domain-containing protein 2; PHR domain, B 4e-08
3iz5_Z162 60S ribosomal protein L24 (L24E); eukaryotic ribos 1e-33
3gbw_A164 E3 ubiquitin-protein ligase mycbp2; MYC-binding pr 4e-33
3izc_Z155 60S ribosomal protein RPL24 (L24E); eukaryotic rib 5e-30
2zkr_u157 60S ribosomal protein L24; protein-RNA complex, 60 7e-30
4a17_T158 RPL24, 60S ribosomal protein L21; eukaryotic ribos 6e-27
3hwj_A172 E3 ubiquitin-protein ligase mycbp2; MYC-binding pr 1e-25
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 2e-25
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 6e-16
1vq8_U66 50S ribosomal protein L24E; ribosome 50S, protein- 7e-16
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 3e-15
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 3e-13
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 3e-12
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 1e-11
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 1e-11
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 1e-11
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 3e-11
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 4e-11
3jyw_S45 60S ribosomal protein L24(A); eukaryotic ribosome, 7e-11
2vpk_A116 Myoneurin; transcription regulation, transcription 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
3b84_A119 Zinc finger and BTB domain-containing protein 48; 2e-10
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 2e-10
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 3e-10
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 4e-10
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 4e-10
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 3e-05
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 4e-10
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 4e-08
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 3e-05
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 8e-08
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 2e-07
>3no8_A BTB/POZ domain-containing protein 2; PHR domain, BTBD1, BTBD2, PAM-highwire-RPM-1 domain, toposis regulation, protein structure initiative; 2.20A {Homo sapiens} Length = 176 Back     alignment and structure
 Score =  151 bits (383), Expect = 4e-43
 Identities = 74/109 (67%), Positives = 90/109 (82%)

Query: 77  RCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQ 136
           RC + GKE  ++RFQ +ESRWGYSGTSDRIRFSV++RIFVVGFGLYG IHGPT+Y V +Q
Sbjct: 7   RCCLRGKECSINRFQQVESRWGYSGTSDRIRFSVNKRIFVVGFGLYGSIHGPTDYQVNIQ 66

Query: 137 LVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLK 185
           ++ T +  V+  N T F+CDGS  T RVMFKEPVEV+PN++YTACATLK
Sbjct: 67  IIHTDSNTVLGQNDTGFSCDGSASTFRVMFKEPVEVLPNVNYTACATLK 115
>3no8_A BTB/POZ domain-containing protein 2; PHR domain, BTBD1, BTBD2, PAM-highwire-RPM-1 domain, toposis regulation, protein structure initiative; 2.20A {Homo sapiens} Length = 176 Back     alignment and structure
>3gbw_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, protein associated with MYC, PAM, RPM-1, PHR domain, structural genomics, PSI-2; HET: MSE; 1.32A {Mus musculus} Length = 164 Back     alignment and structure
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 157 Back     alignment and structure
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T Length = 158 Back     alignment and structure
>3hwj_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, PHR proteins, PHR domain, protein associated with MYC, PAM, PHR1, structural genomics; 2.25A {Mus musculus} Length = 172 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ... Length = 66 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Length = 45 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query633
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 100.0
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 100.0
3no8_A176 BTB/POZ domain-containing protein 2; PHR domain, B 99.91
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.87
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.82
3gbw_A164 E3 ubiquitin-protein ligase mycbp2; MYC-binding pr 99.81
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 99.78
3hwj_A172 E3 ubiquitin-protein ligase mycbp2; MYC-binding pr 99.75
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.74
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.7
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.7
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.69
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.69
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.68
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.68
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.67
2vpk_A116 Myoneurin; transcription regulation, transcription 99.67
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.67
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.67
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.67
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.65
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.64
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.63
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.54
3no8_A 176 BTB/POZ domain-containing protein 2; PHR domain, B 99.16
3izc_Z155 60S ribosomal protein RPL24 (L24E); eukaryotic rib 99.12
3iz5_Z162 60S ribosomal protein L24 (L24E); eukaryotic ribos 98.99
4a17_T158 RPL24, 60S ribosomal protein L21; eukaryotic ribos 98.92
2zkr_u157 60S ribosomal protein L24; protein-RNA complex, 60 98.86
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 98.04
1vq8_U66 50S ribosomal protein L24E; ribosome 50S, protein- 98.0
4ajy_C97 Transcription elongation factor B polypeptide 1; E 97.98
3j21_V66 50S ribosomal protein L24E; archaea, archaeal, KIN 97.57
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 96.99
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 96.96
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 96.78
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 96.77
3jyw_S45 60S ribosomal protein L24(A); eukaryotic ribosome, 96.77
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 96.74
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 96.7
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 96.68
3b84_A119 Zinc finger and BTB domain-containing protein 48; 96.67
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 96.67
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 96.6
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 96.54
2vpk_A116 Myoneurin; transcription regulation, transcription 96.43
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 96.38
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 96.09
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 96.08
2fnj_C96 Transcription elongation factor B polypeptide 1; b 96.02
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 95.99
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 95.95
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 95.23
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 90.66
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 90.64
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 90.39
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 90.06
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 84.34
3kvt_A115 Potassium channel protein SHAW; tetramerization do 80.47
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=100.00  E-value=5.8e-39  Score=331.97  Aligned_cols=151  Identities=17%  Similarity=0.235  Sum_probs=139.0

Q ss_pred             HHHHhhccCchHHHHHHHHhhhhcCchhhhhcccccccccccccCCCCCCCCCCCchhhhcccccCCCCCCCcchhcHHH
Q psy4929         332 LLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIEPSAWQANLTY  411 (633)
Q Consensus       332 lL~~Ad~f~~~~l~~~C~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~c~~~L~~~~~~~~~l~~~Nc~~  411 (633)
                      ++.+|++|+++.+.+.|.++|.+.+                                                +++||+.
T Consensus       115 ll~~A~~l~i~~L~~~c~~~L~~~l------------------------------------------------~~~n~~~  146 (279)
T 3i3n_A          115 VLELADRFLLIRLKEFCGEFLKKKL------------------------------------------------HLSNCVA  146 (279)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------------CTTTHHH
T ss_pred             HHHHHHHHCcHHHHHHHHHHHHHcC------------------------------------------------CcchHHH
Confidence            8999999999999999999999887                                                4479999


Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhchHHHhcCCCCcccCHHHHHhhhcCCCcccc-HHHHHHHHHHHHhhhhcccCCCCCh
Q psy4929         412 HCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIR-EAKLFQAVIRWSEAECTRQSLPITP  490 (633)
Q Consensus       412 il~~A~~~~~~~L~~~c~~fI~~nf~~v~~seeFl~Ls~~~L~~iL~sD~L~v~-E~~Vf~AvlrW~~~ec~r~~~~~d~  490 (633)
                      ++.+|+.|++++|.+.|.+||.+||.+++++++|.+|+.+.|..+|++|+|+|. |.+||+||++|++|         ++
T Consensus       147 i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~---------~~  217 (279)
T 3i3n_A          147 IHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQR---------NA  217 (279)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHT---------TH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHc---------CH
Confidence            999999999999999999999999999999999999999999999999999998 99999999999999         58


Q ss_pred             hhHHhhHHhhhhcCCCCCCCHHHHhcCCCCCCCCCch-HH----HHHHhhhhhh
Q psy4929         491 ENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDS-QL----VRLFLYFHVE  539 (633)
Q Consensus       491 ~~R~~~l~~LL~~VRfplms~~~L~~~v~~~~ll~~~-~~----~~~~~y~~~~  539 (633)
                      ++|++++++||++||||+|++++|.+.+.+++++..+ .|    .+++.||..+
T Consensus       218 ~~r~~~~~~ll~~VRf~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea~~~~~~~  271 (279)
T 3i3n_A          218 EERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHALR  271 (279)
T ss_dssp             HHHTTTHHHHHTTSCGGGSCHHHHHHTTTTSHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCCCCHHHHHHHhhccchhcCCHHHHHHHHHHHHhccCc
Confidence            8999999999999999999999999999999988754 34    4455565544
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3no8_A BTB/POZ domain-containing protein 2; PHR domain, BTBD1, BTBD2, PAM-highwire-RPM-1 domain, toposis regulation, protein structure initiative; 2.20A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3gbw_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, protein associated with MYC, PAM, RPM-1, PHR domain, structural genomics, PSI-2; HET: MSE; 1.32A {Mus musculus} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3hwj_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, PHR proteins, PHR domain, protein associated with MYC, PAM, PHR1, structural genomics; 2.25A {Mus musculus} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3no8_A BTB/POZ domain-containing protein 2; PHR domain, BTBD1, BTBD2, PAM-highwire-RPM-1 domain, toposis regulation, protein structure initiative; 2.20A {Homo sapiens} Back     alignment and structure
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T Back     alignment and structure
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ... Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 633
d1vqou153 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon 4e-14
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 8e-08
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 2e-05
>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 53 Back     information, alignment and structure

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein L24e
domain: Ribosomal protein L24e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 64.7 bits (158), Expect = 4e-14
 Identities = 9/30 (30%), Positives = 10/30 (33%)

Query: 185 KIFRFCRSKCHKLFKRKKNPRKTAWTKAYR 214
               FC SKC       +  R   WT   R
Sbjct: 24  ATTHFCSSKCENNADLGREARNLEWTDTAR 53
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query633
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.66
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.66
d1vqou153 Ribosomal protein L24e {Archaeon Haloarcula marism 97.4
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 96.85
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 96.78
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 93.55
d3kvta_103 akv3.1 voltage-gated potassium channel {California 90.75
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 90.25
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 88.22
d1t1da_100 Shaker potassium channel {California sea hare (Apl 85.98
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 83.48
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.5e-18  Score=150.78  Aligned_cols=97  Identities=23%  Similarity=0.260  Sum_probs=86.0

Q ss_pred             cHHHHHHHHHhCCCcccEEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCCCCCCeEEcCCCCHhhhhhhheecccC
Q psy4929           3 LVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSMTG   82 (633)
Q Consensus         3 tl~~~l~~l~~~~~~sDV~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~~~~~~I~l~dv~~~~f~~lL~ylYTG   82 (633)
                      .+.+.+++++.+|.+|||++.|+|    ++|+|||+|||++|+||++||.+    +..+|.+++++|++|+.+|+|+|||
T Consensus        14 ~ll~~l~~l~~~~~~~Dv~l~v~~----~~~~aHk~vLaa~S~~F~~lf~~----~~~~i~~~~v~~~~f~~ll~~~Ytg   85 (121)
T d1buoa_          14 GLLCKANQMRLAGTLCDVVIMVDS----QEFHAHRTVLACTSKMFEILFHR----NSQHYTLDFLSPKTFQQILEYAYTA   85 (121)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEESS----CEEEECHHHHHHHCHHHHHHTTS----CCSEEEECSSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCCcEeEEEEECC----EEEEEEHHHhcccChhhhhhccC----ccceeecCCCCHHHHHHHHHheEcc
Confidence            477899999999999999999998    89999999999999999999986    4568999999999999999999999


Q ss_pred             cchh----hhhhhhhccccccCCchhhhh
Q psy4929          83 KEQV----VHRFQHIESRWGYSGTSDRIR  107 (633)
Q Consensus        83 ~~~~----~~rfq~la~~w~y~gl~d~i~  107 (633)
                      ++.+    +.....+|..++..++.+.|.
T Consensus        86 ~i~l~~~~v~~ll~~A~~l~~~~L~~~C~  114 (121)
T d1buoa_          86 TLQAKAEDLDDLLYAAEILEIEYLEEQCL  114 (121)
T ss_dssp             CCCCCGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9866    345667788888888877664
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure