Diaphorina citri psyllid: psy5133


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
MQSPATPRKSAKGSKTISLSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKIFRLHDD
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcccccccHHHHHHHHcccc
****************************RNRQR******************************************************IRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEEL*******************************************SHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKIFRLH**
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MQSPATPRKSAKGSKTISLSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKIFRLHDD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
DNA repair protein complementing XP-A cells homolog Involved in DNA excision repair. Initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region.confidentP28518
DNA repair protein complementing XP-A cells Involved in DNA excision repair. Initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region. Required for UV-induced CHEK1 phosphorylation and the recruitment of CEP164 to cyclobutane pyrimidine dimmers (CPD), sites of DNA damage after UV irradiation.confidentP23025
DNA repair protein complementing XP-A cells homolog Involved in DNA excision repair. Initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region. Required for UV-induced CHEK1 phosphorylation and the recruitment of CEP164 to cyclobutane pyrimidine dimmers (CPD), sites of DNA damage after UV irradiation.confidentQ64267

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0010259 [BP]multicellular organismal agingprobableGO:0032502, GO:0032501, GO:0007568, GO:0044707, GO:0044767, GO:0008150, GO:0007275, GO:0044699
GO:0006289 [BP]nucleotide-excision repairprobableGO:0090304, GO:0034641, GO:0006807, GO:1901360, GO:0006139, GO:0051716, GO:0044260, GO:0071704, GO:0044699, GO:0006281, GO:0009987, GO:0006725, GO:0006974, GO:0006950, GO:0044763, GO:0008152, GO:0046483, GO:0044238, GO:0050896, GO:0044237, GO:0043170, GO:0033554, GO:0006259, GO:0008150
GO:0019904 [MF]protein domain specific bindingprobableGO:0003674, GO:0005488, GO:0005515
GO:0009411 [BP]response to UVprobableGO:0008150, GO:0009314, GO:0050896, GO:0009416, GO:0009628
GO:0005654 [CC]nucleoplasmprobableGO:0005575, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0042803 [MF]protein homodimerization activityprobableGO:0046983, GO:0003674, GO:0005515, GO:0042802, GO:0005488
GO:0003684 [MF]damaged DNA bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:1901363

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1D4U, chain A
Confidence level:very confident
Coverage over the Query: 126-238
View the alignment between query and template
View the model in PyMOL