Psyllid ID: psy5133

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MQSPATPRKSAKGSKTISLSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKIFRLHDD
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEccccEEcccccHHHcccccccccccccccccHHHHcccccHHHHHHHHccccccHHHcccccccEEEEcHHHHHHHccccccccccccccHHccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccccccccccEEEEEcccccEEEEEEHEEcccc
Coil and Loop (DISEMBL)
mqspatprksakgsktISLSAMQKEQIERNRQRAIQIQQTrtrdlydpypnpvkagvrqtasapsscpqspnlrsttrlggarspgTIRSIINAVGsklftdtgggflldyddkyeekyikqpapllleseqptcveckkkfpqsflydkfghsvcdscrdgeskhclvtrtdakneyllkdcdldkrepVLRFLraknphnkhwgDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRSSLFnkistspsshshqfgmevhneeddtytrkcstcdfeETFEKIFRLHDD
Flexible Loop (DISEMBL)
mqspatprksakgsktislSAMQKEQIERNRQRAIQiqqtrtrdlydpypNPVKAGVRQTasapsscpqspnlrsttrlggarspgTIRSIINAvgsklftdtgGGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESkhclvtrtdakneyllkdcdldkrEPVLRFLraknphnkhwgDMKLYLSLQVEQRAIEVWGSEEELEQERERraekasnsklkqynKKIKALRMAVRSSLFNKistspsshshqfgmEVHNEEDDTYTRKCSTCDFEETFEKIFRLHDD
Low Complexity Region (SEG)
MQSPATPRKSAKGSKTISLSAMQKeqiernrqraiqiqqtrtrDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSeeeleqererraeKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKIFRLHDD
Disordered region (IsUnstruct)
**************************************************************************************TIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWG*****************************************************************YTRKCSTCDFEETFEKIFR****
Disordered Region (DISOPRED)
****************************RNRQR******************************************************************FTDTGGGFL***************************VECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEEL*******************************************SHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKIFRLH**
Disordered Region (DISEMBL)
******************LSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKA**************************ARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWG*******************KLKQYNKKIKALRMAVRSSLFN***********QFGME**********RKCSTCDFEETFEKIFRLHDD
Disordered Region (DISPRO)
*******************SAMQKEQIERNRQRAIQIQQTRTRD*******************************************IRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKIFRLHD*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQSPATPRKSAKGSKTISLSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKIFRLHDD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
P28518	296	DNA repair protein comple	yes	N/A	0.846	0.895	0.421	2e-59
P27088	267	DNA repair protein comple	N/A	N/A	0.785	0.921	0.441	3e-54
P27089	267	DNA repair protein comple	yes	N/A	0.642	0.752	0.5	4e-53
P23025	273	DNA repair protein comple	yes	N/A	0.801	0.919	0.404	4e-47
Q64267	272	DNA repair protein comple	yes	N/A	0.795	0.915	0.402	6e-47
Q64029	97	DNA repair protein comple	no	N/A	0.303	0.979	0.610	9e-29
O59753	289	DNA repair protein rad14	yes	N/A	0.568	0.615	0.343	2e-16
P53709	396	DNA repair protein RAD14	N/A	N/A	0.859	0.679	0.274	4e-15
P28519	371	DNA repair protein RAD14	yes	N/A	0.578	0.487	0.322	1e-13
Q5PQZ3	573	Zinc transporter 9 OS=Dan	no	N/A	0.226	0.123	0.368	4e-05

>sp|P28518|XPA_DROME DNA repair protein complementing XP-A cells homolog OS=Drosophila melanogaster GN=Xpac PE=2 SV=3

 Score =  229 bits (584), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 180/301 (59%), Gaps = 36/301 (11%)

Query: 19  LSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTR 78
           L+  QK +IERN+ +A ++++ +           V    ++ AS         N    T 
Sbjct: 20  LTNAQKARIERNQAKAQKLREAKL----------VSHPFKELAS---------NKEGGTH 60

Query: 79  LGGARSPGTIRSIINAVGSKLFTDTGGGFLLD-------YDDKYEEKYIKQPAPLL---- 127
              A S G+  S+I   G+K + D+GGGFLL+              K  ++  P+L    
Sbjct: 61  PEAALSQGS--SVIKVQGTK-YIDSGGGFLLEQPVMPTGVGPAGLNKSGEEAPPILDDAI 117

Query: 128 -LESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLD 186
            +  +   C+EC   F  S+L++ FGHSVCD CRD + ++ L+TRT+AK EYLLKDCD D
Sbjct: 118 AIPVQYEECLECGDMFADSYLFNNFGHSVCDKCRDKDERYALITRTEAKAEYLLKDCDFD 177

Query: 187 KREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKL 246
           KREP LR++  KNPHN  WG+MKLYL LQ+ QRA+EVWGSEEEL ++ E R +K    K 
Sbjct: 178 KREPKLRYISRKNPHNVRWGEMKLYLHLQIHQRALEVWGSEEELVRQHEAREDKREEGKA 237

Query: 247 KQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEK 306
           ++YNKK+K LRM VRSS++ K   +   H H+FG + ++EE+DTYT  C TC + ET+EK
Sbjct: 238 RKYNKKMKQLRMEVRSSIYTK--KTHEVHEHEFGPDTYDEEEDTYTHTCITCPYSETYEK 295

Query: 307 I 307
           +
Sbjct: 296 M 296

Involved in DNA excision repair. Initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region.
Drosophila melanogaster (taxid: 7227)

>sp|P27088|XPA_XENLA DNA repair protein complementing XP-A cells homolog OS=Xenopus laevis GN=xpa PE=2 SV=1

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/292 (44%), Positives = 172/292 (58%), Gaps = 46/292 (15%)

Query: 19  LSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTR 78
           LSA  + +IERNRQRA+ ++Q R        P P   G+  T  AP              
Sbjct: 19  LSAAVRAKIERNRQRALMLRQARLA----CRPYPTGEGI-STVKAP-------------- 59

Query: 79  LGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDD---KYEEKYIKQPAPLLLESEQPTC 135
                 P  I             D+GGGF ++ ++   ++ E  ++QP P+L E +   C
Sbjct: 60  ------PKVI-------------DSGGGFFIEEEEAEEQHVENVVRQPGPVL-ECDYLIC 99

Query: 136 VECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFL 195
            EC K F  S+L + F  +VCDSCRD E KH L+TRT+AK EYLLKDCD+DKREPVL+F+
Sbjct: 100 EECGKDFMDSYLSNHFDLAVCDSCRDAEEKHKLITRTEAKQEYLLKDCDIDKREPVLKFI 159

Query: 196 RAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKA 255
             KNPHN HWGDMKLYL  QV +R++EVWGSEE LE+ +E R +     K K+++KK+K 
Sbjct: 160 LKKNPHNTHWGDMKLYLKAQVIKRSLEVWGSEEALEEAKEVRKDNRDKMKQKKFDKKVKE 219

Query: 256 LRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
           LR  VRSSL+ K     S H H++G E H EE D+Y + C TC +E  +EK+
Sbjct: 220 LRRTVRSSLWKK---EASGHQHEYGPEEHVEE-DSYKKTCITCGYEMNYEKM 267

Involved in DNA excision repair. Initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region.

Xenopus laevis (taxid: 8355)

>sp|P27089|XPA_CHICK DNA repair protein complementing XP-A cells homolog OS=Gallus gallus GN=XPA PE=2 SV=1

 Score =  208 bits (530), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 106/212 (50%), Positives = 146/212 (68%), Gaps = 11/212 (5%)

Query: 102 DTGGGFLLDYDD------KYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSV 155
           DTGGGF L+ ++      +  E+ +  PAP+L + +   C +C K+F  S+L   F  + 
Sbjct: 61  DTGGGFFLEEEEEEEEQRRAAERIVHPPAPVL-QFDYLICGDCGKEFMDSYLMQHFDWAT 119

Query: 156 CDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQ 215
           CD+CRD E KH L+TRT+AK EYLLKDCDLDKREPVLRF+  KNPHN  WGDMKLYL LQ
Sbjct: 120 CDNCRDAEDKHKLITRTEAKEEYLLKDCDLDKREPVLRFIVKKNPHNPRWGDMKLYLKLQ 179

Query: 216 VEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSH 275
           V +RA+EVWG+EE L++ +E+R +     K K+++KK+K LR AVRSSL+ K +   S H
Sbjct: 180 VIKRALEVWGNEESLQEAKEQRRDSREKMKQKRFDKKVKELRRAVRSSLWKKTA---SIH 236

Query: 276 SHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
            H++G E  N +++TY + C+ C  E T+EK+
Sbjct: 237 EHEYGPE-ENVDEETYKKTCTVCGHELTYEKM 267

Involved in DNA excision repair. Initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region.

Gallus gallus (taxid: 9031)

>sp|P23025|XPA_HUMAN DNA repair protein complementing XP-A cells OS=Homo sapiens GN=XPA PE=1 SV=1

 Score =  188 bits (478), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/292 (40%), Positives = 168/292 (57%), Gaps = 41/292 (14%)

Query: 19  LSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTR 78
           L A  +  IER RQRA+ ++Q R                   A+ P S   +        
Sbjct: 20  LPASVRASIERKRQRALMLRQARL------------------AARPYSATAAAATGGMAN 61

Query: 79  LGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEK---YIKQPAPLLLESEQPTC 135
           +  A  P  I             DTGGGF+L+ +++ E+K    + QP P++ E +   C
Sbjct: 62  VKAA--PKII-------------DTGGGFILEEEEEEEQKIGKVVHQPGPVM-EFDYVIC 105

Query: 136 VECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFL 195
            EC K+F  S+L + F    CD+CRD + KH L+T+T+AK EYLLKDCDL+KREP L+F+
Sbjct: 106 EECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFI 165

Query: 196 RAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKA 255
             KNPH+  WGDMKLYL LQ+ +R++EVWGS+E LE+ +E R E     K K+++KK+K 
Sbjct: 166 VKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKE 225

Query: 256 LRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
           LR AVRSS++ + +     H H++G E  N EDD Y + C+ C  E T+EK+
Sbjct: 226 LRRAVRSSVWKRETI---VHQHEYGPE-ENLEDDMYRKTCTMCGHELTYEKM 273

Involved in DNA excision repair. Initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region. Required for UV-induced CHEK1 phosphorylation and the recruitment of CEP164 to cyclobutane pyrimidine dimmers (CPD), sites of DNA damage after UV irradiation.

Homo sapiens (taxid: 9606)

>sp|Q64267|XPA_MOUSE DNA repair protein complementing XP-A cells homolog OS=Mus musculus GN=Xpa PE=1 SV=2

 Score =  187 bits (476), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 117/291 (40%), Positives = 162/291 (55%), Gaps = 42/291 (14%)

Query: 19  LSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTR 78
           L A  +  +ER RQRA+ ++Q R      P       GV    +AP              
Sbjct: 22  LPAAVRASVERKRQRALMLRQARLAARPYPAAAAT-GGVASVKAAPK------------- 67

Query: 79  LGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEE--KYIKQPAPLLLESEQPTCV 136
                                  DT GGF+L+ +++  E    + +P P++ E +   C 
Sbjct: 68  ---------------------MIDTKGGFILEEEEEKHEIGNIVHEPGPVM-EFDYTICE 105

Query: 137 ECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLR 196
           EC K+F  S+L + F    CDSCRD + KH L+T+T+AK EYLLKDCDL+KREP LRFL 
Sbjct: 106 ECGKEFMDSYLMNHFDLPTCDSCRDADDKHKLITKTEAKQEYLLKDCDLEKREPALRFLV 165

Query: 197 AKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKAL 256
            KNP +  WGDMKLYL LQV +RA+EVWGS+E LE  +E R E     K K+++KK+K L
Sbjct: 166 KKNPRHSQWGDMKLYLKLQVVKRALEVWGSQEALEDAKEVRQENREKMKQKKFDKKVKEL 225

Query: 257 RMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
           R A+RSS++ + +T   +H H++G E  N EDD Y + C+ C  E T+EK+
Sbjct: 226 RRAIRSSVWKRETT---THQHKYGPE-ENLEDDMYRKTCTLCGHELTYEKM 272

Involved in DNA excision repair. Initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region. Required for UV-induced CHEK1 phosphorylation and the recruitment of CEP164 to cyclobutane pyrimidine dimmers (CPD), sites of DNA damage after UV irradiation.

Mus musculus (taxid: 10090)

>sp|Q64029|XPA_CRIGR DNA repair protein complementing XP-A cells homolog (Fragment) OS=Cricetulus griseus GN=XPA PE=3 SV=1

 Score =  127 bits (320), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 58/95 (61%), Positives = 72/95 (75%)

Query: 145 SFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKH 204
           S+L + F    CDSCRD + KH L+T+T+AK EYLLKDCDL+KREP LRF+  KNP +  
Sbjct: 1   SYLMNHFDLPTCDSCRDADDKHKLITKTEAKQEYLLKDCDLEKREPALRFIVKKNPRHSQ 60

Query: 205 WGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAE 239
           WGDMKLYL LQV +RA+EVWGS++ LE  +E R E
Sbjct: 61  WGDMKLYLKLQVVKRALEVWGSQDALEDAKEVRQE 95

Involved in DNA excision repair. Initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region. Required for UV-induced CHEK1 phosphorylation and the recruitment of CEP164 to cyclobutane pyrimidine dimmers (CPD), sites of DNA damage after UV irradiation.

Cricetulus griseus (taxid: 10029)

>sp|O59753|RAD14_SCHPO DNA repair protein rad14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp14 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 23/201 (11%)

Query: 102 DTGGGFLLDYDDKYEEKYIKQPA-----------------PLLLESE-QPTCVECKKKFP 143
           DT GG+LL+  +K  E   ++PA                 PL L+ E  P C EC     
Sbjct: 67  DTKGGYLLE--EKKVEDLREKPAERELREQEERQKKLRLAPLNLDPETAPKCFECDSIEL 124

Query: 144 QSFLYDKFGHSVCDSCRDG-ESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHN 202
            +  +D F   VC +CR+    K+ L+T+T+ K +YLL + +L  +E + R L+A NPH 
Sbjct: 125 DTKYFDIFHCRVCHTCREKYPDKYSLLTKTECKLDYLLTEPELQDQELLPRLLKA-NPHQ 183

Query: 203 KHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRS 262
           + W +M LYL  QVE+ A + WGS E L+ E ERR  +    K K++ K++  LR   R+
Sbjct: 184 QGWSNMMLYLRYQVEEFAKKKWGSMEALDAEFERREVQKKEMKEKKFEKQLLELRKRTRT 243

Query: 263 SLFNKIST-SPSSHSHQFGME 282
           S ++++S      H H +  E
Sbjct: 244 SNYSRMSIREKRKHVHSYDEE 264

Involved in nucleotide excision repair (NER). Functional in repair of ultraviolet radiation induced damages and in mitotic mutation avoidance. Binds damaged DNA. Binds specifically to base-base mismatches or small insertion/deletion loops with unpaired nucleotides. Maintains GT repeat stability. Functions as a part of the short-patch excision repair system.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53709|RAD14_CANAL DNA repair protein RAD14 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD14 PE=3 SV=2

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 41/310 (13%)

Query: 19  LSAMQKEQIERNRQRAIQIQQT-----RTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNL 73
           L+  Q+++IE+NR RAI+IQ+        +D       PV   +R   + P S      +
Sbjct: 95  LTEEQRQKIEQNRLRAIEIQKNLKQRENQKDDSTTSSKPV-DNIRLNQNRPDSV-----V 148

Query: 74  RSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLD---------------YDDKYEE- 117
            ST +    + P   +            DT GGFL D               + +K  E 
Sbjct: 149 SSTKKF---QPPPIRKQDYIEFDFATMKDTKGGFLQDEKTNTQGADEQTLQDWKNKQREL 205

Query: 118 -KYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSC-RDGESKHCLVTRTDAK 175
            K  + P P+ L++  P C EC+     + L   F    C  C +    K+ L+T+T+ K
Sbjct: 206 QKIRELPPPIDLQN-IPRCRECQSMEVDANLMTNFNVRACRKCIKALPEKYSLLTKTECK 264

Query: 176 NEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERE 235
            +YLL + +L +   +L  +   NPH   +  M+L++  QVE+ A + WG  EEL++E E
Sbjct: 265 EDYLLTEPEL-QDTTLLPRIEKPNPHG--YSRMQLFVRFQVEEFAWKKWGGPEELDKEWE 321

Query: 236 RRAEKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSS----HSHQFGMEVHNEEDDTY 291
           RR E     K K+Y+ +++ +R   R+  + +      S    H H +   V N +  T 
Sbjct: 322 RREENKVKRKEKKYHDQLREMRKRTRAEEYTRKLRDGKSLGERHVHDWSSPV-NIDKHTI 380

Query: 292 TRKCSTCDFE 301
            R+C  C  E
Sbjct: 381 KRRCIDCGIE 390

Involved in DNA excision repair.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|P28519|RAD14_YEAST DNA repair protein RAD14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD14 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 11/192 (5%)

Query: 119 YIKQPAPLLLESEQPTCVECKKKFPQS-FLYDKFGHSVCDSC-RDGESKHCLVTRTDAKN 176
           Y   P P  + S+ P C+EC         L+D F   VC  C ++   K+ L+T+T+ K 
Sbjct: 176 YENAPPPEHI-SKAPKCIECHINIEMDPVLHDVFKLQVCKQCSKEHPEKYALLTKTECKE 234

Query: 177 EYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERER 236
           +Y L D +L+  E +   L   NPH+  +  M+L++  +VE  A + WG EE L++E +R
Sbjct: 235 DYFLTDPELND-EDLFHRLEKPNPHSGTFARMQLFVRCEVEAFAFKKWGGEEGLDEEWQR 293

Query: 237 RAEKASNSKLKQYNKKIKALRMAVRSSLF-NKI--STSPSSHSHQFGMEVHNEED-DTYT 292
           R E  ++ + K+Y KKIK +R+  R+  + N++       +H H F   V    D D Y 
Sbjct: 294 REEGKAHRREKKYEKKIKEMRLKTRAQEYTNRLREKKHGKAHIHHFSDPVDGGIDEDGYQ 353

Query: 293 ---RKCSTCDFE 301
              R+C+ C  E
Sbjct: 354 IQRRRCTDCGLE 365

Involved in nucleotide excision repair. Binds specifically to damaged DNA. Required for the incision step.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5PQZ3|ZNT9_DANRE Zinc transporter 9 OS=Danio rerio GN=slc30a9 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 5/76 (6%)

Query: 164 SKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEV 223
           +++  +T   A NE+ LK  DL+     LR +R ++PH+       ++L   VE +A+EV
Sbjct: 131 TQNNFITAVRAMNEFCLKPSDLEH----LRKIRRRSPHDDT-EAFTVFLRSDVEAKALEV 185

Query: 224 WGSEEELEQERERRAE 239
           WGS+E L +ER++R E
Sbjct: 186 WGSQEALARERDQRKE 201

Plays a role as nuclear receptor coactivator.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
170042382	282	DNA-repair protein complementing XP-A ce	0.859	0.953	0.456	8e-62
195133506	288	GI16151 [Drosophila mojavensis] gi|19390	0.881	0.958	0.417	1e-61
156550480	272	PREDICTED: DNA repair protein complement	0.693	0.797	0.533	4e-59
195397367	293	GJ16428 [Drosophila virilis] gi|19414706	0.869	0.928	0.404	5e-59
307169159	1910	Ras GTPase-activating-like protein IQGAP	0.789	0.129	0.452	6e-59
158285440	280	AGAP007566-PA [Anopheles gambiae str. PE	0.856	0.957	0.437	9e-59
332017839	271	DNA repair protein complementing XP-A ce	0.789	0.911	0.449	1e-58
383856492	270	PREDICTED: DNA repair protein complement	0.837	0.970	0.451	7e-58
1255595	296	Dxpa protein [Drosophila melanogaster]	0.846	0.895	0.421	1e-57
17136722	296	xeroderma pigmentosum group A-like [Dros	0.846	0.895	0.421	1e-57

>gi|170042382|ref|XP_001848907.1| DNA-repair protein complementing XP-A cells [Culex quinquefasciatus] gi|167865867|gb|EDS29250.1| DNA-repair protein complementing XP-A cells [Culex quinquefasciatus]

 Score =  243 bits (620), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 138/302 (45%), Positives = 190/302 (62%), Gaps = 33/302 (10%)

Query: 14  SKTISLSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNL 73
           S T  LS   + +IE NRQRA+ ++  R      PY            +A S  P++   
Sbjct: 6   SSTSDLSDRDRLRIEANRQRALNLRLARL--TAHPY-----------GAAKSRPPETAV- 51

Query: 74  RSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDY---DDKYEEKYIKQPAPLL--- 127
                    +S G   ++I   GSK F D+GGGFL++      K EE  + +  P +   
Sbjct: 52  -------AVKSHGV--NVIKVSGSK-FIDSGGGFLIEQRTGGSKEEEPSVDEKEPEVDSV 101

Query: 128 -LESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLD 186
            L  E   C+EC  +F  S+L   FG+ VCD+CRD + KH L+TRT+AK EYLLKDCDLD
Sbjct: 102 PLPVEFDECLECGDRFADSWLMATFGYKVCDACRDNDGKHSLITRTEAKQEYLLKDCDLD 161

Query: 187 KREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKL 246
           KREPVL+F+  KNPHN  WG+MKLYL +Q+E+RA++VWGSEE L +E+E R EK   +K+
Sbjct: 162 KREPVLKFISRKNPHNVRWGEMKLYLHIQIEERALQVWGSEENLVKEKELRDEKREVTKV 221

Query: 247 KQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGM-EVHNEEDDTYTRKCSTCDFEETFE 305
           K+YNK++K LRM +RSSL++K  TS  +H+H +   EV+NEE+DTYTRKC +C  +ET+E
Sbjct: 222 KKYNKRLKELRMDMRSSLYDKRETS-KAHTHAWDEDEVYNEEEDTYTRKCESCGHQETYE 280

Query: 306 KI 307
           K+
Sbjct: 281 KM 282

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195133506|ref|XP_002011180.1| GI16151 [Drosophila mojavensis] gi|193907155|gb|EDW06022.1| GI16151 [Drosophila mojavensis]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 132/316 (41%), Positives = 185/316 (58%), Gaps = 40/316 (12%)

Query: 3   SPATPRKSAKGSKTISLSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTAS 62
           S  T   + K + + +L+  Q+ +IERN+ +A ++++ +   +  PY N  K G  +   
Sbjct: 2   SEETVTGTTKAASSSTLTTAQRARIERNQAKAQKLREAKL--VSHPYKNVQKNGNEELPV 59

Query: 63  APSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDY----------- 111
           A                      G   ++I   G+K + DTGGGFLL+            
Sbjct: 60  A----------------------GQDNAVIKVQGTK-YIDTGGGFLLEQPVLGATGKPTG 96

Query: 112 DDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTR 171
           ++  E   I+    + +  E+  C+EC  ++  S+L + FGHSVCD CRD E +H L+TR
Sbjct: 97  EEPAEAAVIEDAIAIPVVYEE--CLECGDQYADSYLLNNFGHSVCDKCRDNEERHSLITR 154

Query: 172 TDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELE 231
           T+AK EYLLKDCD DKREPVLR++  KNPHN  WG+MKLYL LQV QRA+EVWGSEEEL 
Sbjct: 155 TEAKAEYLLKDCDFDKREPVLRYISRKNPHNVRWGEMKLYLHLQVVQRAMEVWGSEEELT 214

Query: 232 QERERRAEKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTY 291
           ++ E R +K    K ++YNK++K LRM VRSS++ K   +   H H+FG E +NE DD Y
Sbjct: 215 RQHELREDKRVLGKTRKYNKQMKQLRMEVRSSIYTK--KTKGVHVHEFGPETYNEADDNY 272

Query: 292 TRKCSTCDFEETFEKI 307
           T  C TC + ETFEK+
Sbjct: 273 THACLTCQYTETFEKM 288

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550480|ref|XP_001601437.1| PREDICTED: DNA repair protein complementing XP-A cells homolog [Nasonia vitripennis]

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 158/225 (70%), Gaps = 8/225 (3%)

Query: 86  GTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKY---IKQPAPLLLESEQPTCVECKKKF 142
           G    +I   G K+  D+G GFL++ DD  E         PAP++  S+ P C EC K+F
Sbjct: 53  GVRGKVIKVQGQKV-VDSGAGFLIEEDDALEAAMCTIAADPAPII--SKLPVCQECSKEF 109

Query: 143 PQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHN 202
             S+L  KF +  CD CRD + KH L+TRT+AK EYLLKDCDLDKREP L+++  KNPHN
Sbjct: 110 KDSYLLQKFEYLACDDCRDNDGKHSLITRTEAKQEYLLKDCDLDKREPALKYVLRKNPHN 169

Query: 203 KHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRS 262
            HWG+MKLYL +Q+E RA+EVWGSEE L +ERE+R  K   +K+K++NKK+K LRM VRS
Sbjct: 170 VHWGEMKLYLQIQIEVRALEVWGSEENLLEEREKREVKRQETKIKKFNKKVKKLRMEVRS 229

Query: 263 SLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
           SL++K  T  +SH+HQFG + +NE+DD YT  C+ C FEET+EK+
Sbjct: 230 SLYDK--TQKASHTHQFGEDTYNEDDDNYTHACTICGFEETYEKM 272

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195397367|ref|XP_002057300.1| GJ16428 [Drosophila virilis] gi|194147067|gb|EDW62786.1| GJ16428 [Drosophila virilis]

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 127/314 (40%), Positives = 186/314 (59%), Gaps = 42/314 (13%)

Query: 6   TPRKSAKGSKTISLSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPS 65
           T   S  G+ +  L+  QK +IERN+ +A ++++ +                    S P 
Sbjct: 10  TEAASVGGASSSKLTNAQKARIERNQAKAQKLREAKL------------------VSHPY 51

Query: 66  SCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDY-----DDKYEEKYI 120
              ++ N      + G  +P     +I   G+K + D+GGGFLL+       +K  E   
Sbjct: 52  KQLENSNANGEQPIAGQNNP-----VIKVQGTK-YIDSGGGFLLEQPVLASANKSTEAPA 105

Query: 121 KQPA-------PLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTD 173
             P        P++ E     C++C  ++  S+L++ FG+SVCD CRD E +H L+TRT+
Sbjct: 106 VAPIIEDAIAIPVVYEE----CLDCGDQYADSYLFNNFGYSVCDKCRDTEERHSLITRTE 161

Query: 174 AKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQE 233
           AK EYLLKDCD DKREPVLR++  KNPHN  WG+MKLYL LQV QRA++VWGSEEEL ++
Sbjct: 162 AKAEYLLKDCDFDKREPVLRYISRKNPHNVRWGEMKLYLHLQVLQRAMDVWGSEEELMRQ 221

Query: 234 RERRAEKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTR 293
            E+R +K    K ++YNK++K LRM VRSS++ K +T  + H H+FG + +NE +D YT 
Sbjct: 222 HEQREDKRVLGKTRKYNKQMKQLRMEVRSSIYTKKTT--AVHEHEFGPDTYNELEDNYTH 279

Query: 294 KCSTCDFEETFEKI 307
            C+TC + ET+EK+
Sbjct: 280 SCTTCPYSETYEKM 293

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169159|gb|EFN61975.1| Ras GTPase-activating-like protein IQGAP1 [Camponotus floridanus]

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 130/287 (45%), Positives = 188/287 (65%), Gaps = 40/287 (13%)

Query: 24   KEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGAR 83
            KE+ ERNRQRA+ +++++   +  PY                                  
Sbjct: 1661 KERAERNRQRALLLKKSKI--VTHPY-------------------------------ARE 1687

Query: 84   SPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIK---QPAPLLLESEQPTCVECKK 140
            +  +I+  +  V  +   D+GGGFL++ +D+ E++ +K   +P P++ +  +  C EC++
Sbjct: 1688 NSESIKGRLLKVQGQRVIDSGGGFLIEENDELEQQLLKIRTEPEPVIGKFNE--CEECQQ 1745

Query: 141  KFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNP 200
            KF  S+L   F  +VCD+CRD E KH L+T+T+AK EYLLKDCDLDKREPVL+++  KNP
Sbjct: 1746 KFGDSYLLQTFDLAVCDNCRDKEGKHSLITKTEAKQEYLLKDCDLDKREPVLKYIIRKNP 1805

Query: 201  HNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAV 260
            HN +WG+MKLYL LQ+EQRA+EVWGSEE L +E+E R  K    K+K++NKKIK LRM V
Sbjct: 1806 HNVNWGEMKLYLHLQIEQRALEVWGSEENLLKEKEIRDIKREGVKIKKFNKKIKQLRMQV 1865

Query: 261  RSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
            RSSL++K  T+ +SH+H+FG + +NEEDDTYT  C+TC +EET+EK+
Sbjct: 1866 RSSLYDK--TTKASHTHKFGEDTYNEEDDTYTHTCTTCGYEETYEKM 1910

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285440|ref|XP_308307.3| AGAP007566-PA [Anopheles gambiae str. PEST] gi|157019993|gb|EAA04751.3| AGAP007566-PA [Anopheles gambiae str. PEST]

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 134/306 (43%), Positives = 188/306 (61%), Gaps = 38/306 (12%)

Query: 10  SAKGSKTISLSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQ 69
           S   SK   LS  Q+ +IE NRQ+AI ++Q R   L  PY                    
Sbjct: 5   SDSSSKQEHLSEYQRRRIEENRQKAINLRQARL--LTHPY-------------------- 42

Query: 70  SPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDY-DDKYEEKYIKQPAPLLL 128
                S+ R     +  ++ ++I   G+K + D+GGGFL++   +  EE+  +Q  P+  
Sbjct: 43  ----NSSDRKQPTETAVSVNNVIKVSGTK-YMDSGGGFLIEQRTNPTEEEANQQEEPVPE 97

Query: 129 ESEQPT------CVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKD 182
               P       C+EC  +F  S+L   F ++VCD+CR+ + +H L+TRT+AK EYLLKD
Sbjct: 98  SDAVPVPIEYDECLECGDRFADSYLLTTFDYAVCDACREPDGQHSLITRTEAKQEYLLKD 157

Query: 183 CDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKAS 242
           CDLD+REPVL+F+  KNPHN  WG+MKLYL LQ+E+RA+EVWGSEE+L +E+E R EK  
Sbjct: 158 CDLDRREPVLKFISRKNPHNVRWGEMKLYLHLQIEKRALEVWGSEEKLMREKEEREEKRE 217

Query: 243 NSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFG-MEVHNEEDDTYTRKCSTCDFE 301
            +K+K+YNK++K LRM VRSSL++K   +  +H H +G  EV+NE DDTYTR C TC   
Sbjct: 218 VAKVKKYNKRLKELRMDVRSSLYDK---TVQAHVHSYGDSEVYNEADDTYTRTCETCGHS 274

Query: 302 ETFEKI 307
           ET+EK+
Sbjct: 275 ETYEKM 280

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017839|gb|EGI58499.1| DNA repair protein complementing XP-A cells-like protein [Acromyrmex echinatior]

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 129/287 (44%), Positives = 186/287 (64%), Gaps = 40/287 (13%)

Query: 24  KEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGAR 83
           KE+ ERNRQRA+ +++++   +  PY                                  
Sbjct: 22  KERAERNRQRALLLKKSKV--VTHPYARE------------------------------- 48

Query: 84  SPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIK---QPAPLLLESEQPTCVECKK 140
           + G+ +  +  V  +   D+GGGFL++ +D+ E++ +K   +PAP + +  +  C EC++
Sbjct: 49  NNGSTKERMLKVQGQRVIDSGGGFLIEENDELEQQMLKIRTEPAPDIGKFNE--CEECQQ 106

Query: 141 KFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNP 200
           KF  S+L   F  +VCD CRD E KH L+T+T+AK EYLLKDCDLD+REPVL+++  KNP
Sbjct: 107 KFRDSYLLQTFDLTVCDKCRDKEGKHSLITKTEAKQEYLLKDCDLDRREPVLKYIVRKNP 166

Query: 201 HNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAV 260
           HN +WG+MKLYL LQ+EQRA+EVWGSEE L +E+E R  K   +K+K++NKKIK LRM V
Sbjct: 167 HNVNWGEMKLYLHLQIEQRALEVWGSEENLLKEKEARETKREGAKIKKFNKKIKQLRMQV 226

Query: 261 RSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
           RSSL++K  T+ +SH H+FG + +NEEDDTYT  C+TC +EE +EK+
Sbjct: 227 RSSLYDK--TTKASHVHEFGEDTYNEEDDTYTHTCTTCGYEEIYEKM 271

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856492|ref|XP_003703742.1| PREDICTED: DNA repair protein complementing XP-A cells homolog [Megachile rotundata]

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 136/301 (45%), Positives = 191/301 (63%), Gaps = 39/301 (12%)

Query: 10  SAKGSKTISLSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQ 69
           S + +  +  S   KE+ ERNRQ+A+ +++++   L  PY             A S   +
Sbjct: 6   SCENNDLVDSSQHFKERAERNRQKALLLKKSKV--LTHPY-------------ATSENGE 50

Query: 70  SPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIK---QPAPL 126
           S   RS  ++ G R                  D+GGGFL++ +D  EE+ +K    PAP+
Sbjct: 51  SIKGRSL-KVQGQR----------------VIDSGGGFLIEENDDLEEQLLKITTDPAPI 93

Query: 127 LLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLD 186
           +++S  P C EC+++F  S+L   F   VCD CRD   KH L+T+T+AK EYLLKDCDLD
Sbjct: 94  IVDS--PHCDECQEEFKDSYLLKTFDLPVCDKCRDSSGKHSLITKTEAKQEYLLKDCDLD 151

Query: 187 KREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKL 246
           KREP L+ +  KNPHN +WG+MKLYL LQ+EQRA+EVWGSEE L +E+E R  K   +K+
Sbjct: 152 KREPPLKCITRKNPHNSNWGEMKLYLHLQIEQRALEVWGSEENLLKEKESRDIKREGTKI 211

Query: 247 KQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEK 306
           K++NKKIK LRM VRSSL++K  T+ +SH+H FG + +NE+DDTYT  C +C +EET+EK
Sbjct: 212 KKFNKKIKQLRMQVRSSLYDK--TTKASHTHNFGEDTYNEDDDTYTHTCISCGYEETYEK 269

Query: 307 I 307
           +
Sbjct: 270 M 270

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1255595|dbj|BAA06690.1| Dxpa protein [Drosophila melanogaster]

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 180/301 (59%), Gaps = 36/301 (11%)

Query: 19  LSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTR 78
           L+  QK +IERN+ +A ++++ +           V    ++ AS         N    T 
Sbjct: 20  LTNAQKARIERNQAKAQKLREAKL----------VSHPFKELAS---------NKEGGTH 60

Query: 79  LGGARSPGTIRSIINAVGSKLFTDTGGGFLLD-------YDDKYEEKYIKQPAPLL---- 127
              A S G+  S+I   G+K + D+GGGFLL+              K  ++  P+L    
Sbjct: 61  PEAALSQGS--SVIKVQGTK-YIDSGGGFLLEQPVMPTGVGPAGLNKSGEEAPPILDDAI 117

Query: 128 -LESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLD 186
            +  +   C+EC   F  S+L++ FGHSVCD CRD + ++ L+TRT+AK EYLLKDCD D
Sbjct: 118 AIPVQYEECLECGDMFADSYLFNNFGHSVCDKCRDKDERYALITRTEAKAEYLLKDCDFD 177

Query: 187 KREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKL 246
           KREP LR++  KNPHN  WG+MKLYL LQ+ QRA+EVWGSEEEL ++ E R +K    K 
Sbjct: 178 KREPKLRYISRKNPHNVRWGEMKLYLHLQIHQRALEVWGSEEELVRQHEAREDKREEGKA 237

Query: 247 KQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEK 306
           ++YNKK+K LRM VRSS++ K   +   H H+FG + ++EE+DTYT  C TC + ET+EK
Sbjct: 238 RKYNKKMKQLRMEVRSSIYTK--KTHEVHEHEFGPDTYDEEEDTYTHTCITCPYSETYEK 295

Query: 307 I 307
           +
Sbjct: 296 M 296

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136722|ref|NP_476866.1| xeroderma pigmentosum group A-like [Drosophila melanogaster] gi|17380511|sp|P28518.3|XPA_DROME RecName: Full=DNA repair protein complementing XP-A cells homolog; AltName: Full=Xeroderma pigmentosum group A-complementing protein homolog gi|4185895|emb|CAA21834.1| EG:EG0007.8 [Drosophila melanogaster] gi|7290463|gb|AAF45917.1| xeroderma pigmentosum group A-like [Drosophila melanogaster] gi|359339170|gb|AEV23918.1| FI17405p1 [Drosophila melanogaster]

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 180/301 (59%), Gaps = 36/301 (11%)

Query: 19  LSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTR 78
           L+  QK +IERN+ +A ++++ +           V    ++ AS         N    T 
Sbjct: 20  LTNAQKARIERNQAKAQKLREAKL----------VSHPFKELAS---------NKEGGTH 60

Query: 79  LGGARSPGTIRSIINAVGSKLFTDTGGGFLLD-------YDDKYEEKYIKQPAPLL---- 127
              A S G+  S+I   G+K + D+GGGFLL+              K  ++  P+L    
Sbjct: 61  PEAALSQGS--SVIKVQGTK-YIDSGGGFLLEQPVMPTGVGPAGLNKSGEEAPPILDDAI 117

Query: 128 -LESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLD 186
            +  +   C+EC   F  S+L++ FGHSVCD CRD + ++ L+TRT+AK EYLLKDCD D
Sbjct: 118 AIPVQYEECLECGDMFADSYLFNNFGHSVCDKCRDKDERYALITRTEAKAEYLLKDCDFD 177

Query: 187 KREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKL 246
           KREP LR++  KNPHN  WG+MKLYL LQ+ QRA+EVWGSEEEL ++ E R +K    K 
Sbjct: 178 KREPKLRYISRKNPHNVRWGEMKLYLHLQIHQRALEVWGSEEELVRQHEAREDKREEGKA 237

Query: 247 KQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEK 306
           ++YNKK+K LRM VRSS++ K   +   H H+FG + ++EE+DTYT  C TC + ET+EK
Sbjct: 238 RKYNKKMKQLRMEVRSSIYTK--KTHEVHEHEFGPDTYDEEEDTYTHTCITCPYSETYEK 295

Query: 307 I 307
           +
Sbjct: 296 M 296

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
FB|FBgn0004832	296	Xpac "Xeroderma pigmentosum gr	0.738	0.780	0.443	4.4e-52
UNIPROTKB|P27089	267	XPA "DNA repair protein comple	0.814	0.955	0.426	1.1e-50
UNIPROTKB|E2QWU4	273	XPA "Uncharacterized protein"	0.696	0.798	0.441	3.2e-49
UNIPROTKB|Q2TBG4	273	XPA "Uncharacterized protein"	0.798	0.915	0.407	4.1e-49
UNIPROTKB|P23025	273	XPA "DNA repair protein comple	0.798	0.915	0.394	4.7e-48
UNIPROTKB|F1SSH0	273	XPA "Uncharacterized protein"	0.798	0.915	0.390	1.2e-47
MGI|MGI:99135	272	Xpa "xeroderma pigmentosum, co	0.798	0.919	0.408	1.2e-47
ZFIN|ZDB-GENE-040426-1205	549	xpa "xeroderma pigmentosum, co	0.680	0.387	0.448	2e-47
WB|WBGene00006963	241	xpa-1 [Caenorhabditis elegans	0.638	0.829	0.408	5.5e-38
UNIPROTKB|F2Z2T2	264	XPA "DNA repair protein-comple	0.642	0.761	0.389	1.1e-37

FB|FBgn0004832 Xpac "Xeroderma pigmentosum group A-like" [Drosophila melanogaster (taxid:7227)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 110/248 (44%), Positives = 150/248 (60%)

Query:    72 NLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYE-------EKYIKQPA 124
             N    T    A S G+  S+I   G+K + D+GGGFLL+              K  ++  
Sbjct:    54 NKEGGTHPEAALSQGS--SVIKVQGTK-YIDSGGGFLLEQPVMPTGVGPAGLNKSGEEAP 110

Query:   125 PLLLES-----EQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYL 179
             P+L ++     +   C+EC   F  S+L++ FGHSVCD CRD + ++ L+TRT+AK EYL
Sbjct:   111 PILDDAIAIPVQYEECLECGDMFADSYLFNNFGHSVCDKCRDKDERYALITRTEAKAEYL 170

Query:   180 LKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSXXXXXXXXXXXXX 239
             LKDCD DKREP LR++  KNPHN  WG+MKLYL LQ+ QRA+EVWGS             
Sbjct:   171 LKDCDFDKREPKLRYISRKNPHNVRWGEMKLYLHLQIHQRALEVWGSEEELVRQHEARED 230

Query:   240 KASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCD 299
             K    K ++YNKK+K LRM VRSS++ K   +   H H+FG + ++EE+DTYT  C TC 
Sbjct:   231 KREEGKARKYNKKMKQLRMEVRSSIYTK--KTHEVHEHEFGPDTYDEEEDTYTHTCITCP 288

Query:   300 FEETFEKI 307
             + ET+EK+
Sbjct:   289 YSETYEKM 296

GO:0006289 "nucleotide-excision repair" evidence=IGI;ISS;IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

UNIPROTKB|P27089 XPA "DNA repair protein complementing XP-A cells homolog" [Gallus gallus (taxid:9031)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 114/267 (42%), Positives = 153/267 (57%)

Query:    48 PYPNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGAR-SPGTIRSIINAVGSKLFTDTGGG 106
             P P+    G R + SA +      N R    L  AR +           G     DTGGG
Sbjct:     6 PGPDEGAEGERPSISATALARMERNRRRALALRQARLAARPYPQAAAGAGPPQGRDTGGG 65

Query:   107 FLLDYDDKYEE------KYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCR 160
             F L+ +++ EE      + +  PAP+L + +   C +C K+F  S+L   F  + CD+CR
Sbjct:    66 FFLEEEEEEEEQRRAAERIVHPPAPVL-QFDYLICGDCGKEFMDSYLMQHFDWATCDNCR 124

Query:   161 DGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRA 220
             D E KH L+TRT+AK EYLLKDCDLDKREPVLRF+  KNPHN  WGDMKLYL LQV +RA
Sbjct:   125 DAEDKHKLITRTEAKEEYLLKDCDLDKREPVLRFIVKKNPHNPRWGDMKLYLKLQVIKRA 184

Query:   221 IEVWGSXXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFG 280
             +EVWG+                  K K+++KK+K LR AVRSSL+ K +   S H H++G
Sbjct:   185 LEVWGNEESLQEAKEQRRDSREKMKQKRFDKKVKELRRAVRSSLWKKTA---SIHEHEYG 241

Query:   281 MEVHNEEDDTYTRKCSTCDFEETFEKI 307
              E  N +++TY + C+ C  E T+EK+
Sbjct:   242 PE-ENVDEETYKKTCTVCGHELTYEKM 267

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

UNIPROTKB|E2QWU4 XPA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 101/229 (44%), Positives = 142/229 (62%)

Query:    82 ARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKY---IKQPAPLLLESEQPTCVEC 138
             A +PG    + N   +    DTGGGF+L+ +++ E K    I QP P++ E +   C EC
Sbjct:    53 AAAPG---GMANVKAAPKIIDTGGGFILEEEEEEEHKIGKVIHQPGPVM-EFDYAICEEC 108

Query:   139 KKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAK 198
              K+F  S+L   F  + CD+CRD + KH L+T+T+AK EYLLKDCDL+KREP L+F+  K
Sbjct:   109 GKEFMDSYLMSHFDLATCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKK 168

Query:   199 NPHNKHWGDMKLYLSLQVEQRAIEVWGSXXXXXXXXXXXXXKASNSKLKQYNKKIKALRM 258
             NPH+  WGDMKLYL LQ+ +R++EVWGS                  K K+++KK+K LR 
Sbjct:   169 NPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEARQENREKMKQKKFDKKVKELRR 228

Query:   259 AVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
             AVRSSL+ + + +   H H++G E  N EDD Y + C+ C  E T+EK+
Sbjct:   229 AVRSSLWKRETVA---HQHEYGPE-ENLEDDMYRKTCTVCGHELTYEKM 273

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q2TBG4 XPA "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 108/265 (40%), Positives = 154/265 (58%)

Query:    50 PNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRS----IINAVGSKLFTDTGG 105
             P  + A VR  AS      ++  LR   RL     P T  +    + N   +    DTGG
Sbjct:    17 PTELSASVR--ASIERKRQRALMLRQA-RLAARPYPATAAATTGGMANVKAAPKIIDTGG 73

Query:   106 GFLLDYDDKYEE---KYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDG 162
             GF+L+ +++ E    K + QP P++ E +   C EC K+F  S+L + F  + CD+CRD 
Sbjct:    74 GFILEEEEEEEHTVGKVVHQPGPVM-EFDYVICEECGKEFMDSYLMNHFDLATCDNCRDA 132

Query:   163 ESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIE 222
             + KH L+T+T+AK EYLLKDCDL+KREP L+F+  KNPH+  WGDMKLYL LQ+ +R++E
Sbjct:   133 DDKHKLITKTEAKQEYLLKDCDLEKREPALKFIVKKNPHHSQWGDMKLYLRLQIVKRSLE 192

Query:   223 VWGSXXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGME 282
             VWGS                  K K+++KK+K LR AVRSS++ K     ++H H++G E
Sbjct:   193 VWGSQEALEEAKEVRQKNREKMKQKKFDKKVKELRRAVRSSVWKK---ETAAHQHEYGAE 249

Query:   283 VHNEEDDTYTRKCSTCDFEETFEKI 307
                 EDD Y + C+ C  E T+EK+
Sbjct:   250 -EKLEDDMYRKTCTVCGHELTYEKM 273

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P23025 XPA "DNA repair protein complementing XP-A cells" [Homo sapiens (taxid:9606)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 103/261 (39%), Positives = 150/261 (57%)

Query:    50 PNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLL 109
             P  V+A + +         Q+   R   R   A +      + N   +    DTGGGF+L
Sbjct:    21 PASVRASIERKRQRALMLRQA---RLAARPYSATAAAATGGMANVKAAPKIIDTGGGFIL 77

Query:   110 DYDDKYEEKY---IKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKH 166
             + +++ E+K    + QP P++ E +   C EC K+F  S+L + F    CD+CRD + KH
Sbjct:    78 EEEEEEEQKIGKVVHQPGPVM-EFDYVICEECGKEFMDSYLMNHFDLPTCDNCRDADDKH 136

Query:   167 CLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGS 226
              L+T+T+AK EYLLKDCDL+KREP L+F+  KNPH+  WGDMKLYL LQ+ +R++EVWGS
Sbjct:   137 KLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGS 196

Query:   227 XXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNE 286
                               K K+++KK+K LR AVRSS++ + +     H H++G E  N 
Sbjct:   197 QEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETIV---HQHEYGPE-ENL 252

Query:   287 EDDTYTRKCSTCDFEETFEKI 307
             EDD Y + C+ C  E T+EK+
Sbjct:   253 EDDMYRKTCTMCGHELTYEKM 273

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005634 "nucleus" evidence=TAS

GO:0000718 "nucleotide-excision repair, DNA damage removal" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

UNIPROTKB|F1SSH0 XPA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 102/261 (39%), Positives = 149/261 (57%)

Query:    50 PNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLL 109
             P  V+A + +         Q+   R   R   A +      + N   +    DTGGGF+L
Sbjct:    21 PASVRANIERKRQRALMLRQA---RLAARPYPATTAAATGGVANVKAAPKIIDTGGGFIL 77

Query:   110 DYDDKYEE---KYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKH 166
             + + + E    K + QP P++ E +   C EC K+F  S+L + F  + CD+CRD + KH
Sbjct:    78 EEEVEEEHAIGKVVHQPGPVM-EFDYVICEECGKEFMDSYLMNHFDLATCDNCRDADDKH 136

Query:   167 CLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGS 226
              L+T+T+AK EYLLKDCDL+KREP L+F+  KNPH+  WGDMKLYL LQ+ +R++EVWG+
Sbjct:   137 KLITKTEAKQEYLLKDCDLEKREPALKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGT 196

Query:   227 XXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNE 286
                               K K+++KK+K LR AVRSS++ + + +   H H +G E  N 
Sbjct:   197 QEALEEAKAIRQKNREKMKQKKFDKKVKELRRAVRSSVWKRETVA---HQHVYGPE-ENL 252

Query:   287 EDDTYTRKCSTCDFEETFEKI 307
             EDD Y + C+ C  E T+EK+
Sbjct:   253 EDDMYRKTCTVCGHELTYEKM 273

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:99135 Xpa "xeroderma pigmentosum, complementation group A" [Mus musculus (taxid:10090)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 107/262 (40%), Positives = 151/262 (57%)

Query:    50 PNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRS--IINAVGSKLFTDTGGGF 107
             P  + A VR  AS      ++  LR   RL     P    +  + +   +    DT GGF
Sbjct:    19 PAQLPAAVR--ASVERKRQRALMLRQA-RLAARPYPAAAATGGVASVKAAPKMIDTKGGF 75

Query:   108 LLDYDDKYEE--KYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESK 165
             +L+ +++  E    + +P P++ E +   C EC K+F  S+L + F    CDSCRD + K
Sbjct:    76 ILEEEEEKHEIGNIVHEPGPVM-EFDYTICEECGKEFMDSYLMNHFDLPTCDSCRDADDK 134

Query:   166 HCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWG 225
             H L+T+T+AK EYLLKDCDL+KREP LRFL  KNP +  WGDMKLYL LQV +RA+EVWG
Sbjct:   135 HKLITKTEAKQEYLLKDCDLEKREPALRFLVKKNPRHSQWGDMKLYLKLQVVKRALEVWG 194

Query:   226 SXXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHN 285
             S                  K K+++KK+K LR A+RSS++ + +T+   H H++G E  N
Sbjct:   195 SQEALEDAKEVRQENREKMKQKKFDKKVKELRRAIRSSVWKRETTT---HQHKYGPE-EN 250

Query:   286 EEDDTYTRKCSTCDFEETFEKI 307
              EDD Y + C+ C  E T+EK+
Sbjct:   251 LEDDMYRKTCTLCGHELTYEKM 272

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006281 "DNA repair" evidence=IMP

GO:0006289 "nucleotide-excision repair" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IMP

GO:0009411 "response to UV" evidence=IMP

GO:0009636 "response to toxic substance" evidence=IMP

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1205 xpa "xeroderma pigmentosum, complementation group A" [Danio rerio (taxid:7955)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 100/223 (44%), Positives = 138/223 (61%)

Query:    82 ARSPGTIRSIINAVGSKLFTDTGGGFLLDY----DDKYEEKYIKQPAPLLLESEQPTCVE 137
             +R    +    +A  +K   D+G GF ++     D++ E++ ++QPAP++ E +   C E
Sbjct:    52 SRPSSAVEGATHAKVAKTI-DSGAGFFIEEETTEDEQQEKRVVQQPAPVM-EPDYLMCEE 109

Query:   138 CKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRA 197
             C+K F  S+L + F  SVCD CRD E KH L++RT+AK  YLLKDCDLDKREP LRF+  
Sbjct:   110 CQKPFMDSYLSNSFDLSVCDKCRDNEVKHKLISRTEAKKNYLLKDCDLDKREPPLRFILR 169

Query:   198 KNPHNKHWGDMKLYLSLQVEQRAIEVWGSXXXXXXXXXXXXXKASNSKLKQYNKKIKALR 257
             KNPHN  WGDMKLYL  QVE+R++EVWGS                  K K++NKK+K LR
Sbjct:   170 KNPHNPRWGDMKLYLKTQVEKRSMEVWGSDEALEEAKETREENKEVQKQKRFNKKVKELR 229

Query:   258 MAVRSSLFNKISTSPSSHSHQFGM-EVHNEEDDTYTRKCSTCD 299
               VRSS+F K     S H H +G  E+ +EE+D+++ KC+  D
Sbjct:   230 RTVRSSMFKK---DTSIHQHDYGHDELLDEEEDSFSEKCNFRD 269

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

WB|WBGene00006963 xpa-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 87/213 (40%), Positives = 125/213 (58%)

Query:   104 GGGFLLDYDDKYEEKY-----IKQP----APLLLESEQPTCVECKKKFPQSFLYDKFGHS 154
             GGGF  D DD+ +E+      ++Q     A  L+++ +  C +C K    S+L++++  +
Sbjct:    33 GGGFC-DDDDEVQERREQISEMRQKREEAAHNLIQAPE-NCEKCDKGLMDSWLWERYNCA 90

Query:   155 VCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSL 214
             VCD+CRD + +H L+ RT+ KN YLLKDCDLD R+P LR+   KNPHN  +GDMKLYL  
Sbjct:    91 VCDACRDDKGEHKLLARTEVKNTYLLKDCDLDLRKPKLRYWAKKNPHNPRYGDMKLYLKC 150

Query:   215 QVEQRAIEVWGSXXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSS 274
             Q+E R +EV GS                    K++ KK+K LR  +R +   K+      
Sbjct:   151 QIETRVLEVHGSWEDLELKKELREQSKEVRSEKRFEKKLKDLRQQIRGTSGVKVDFG-RP 209

Query:   275 HSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
             H+H+FG E H EED T+ R C TC++EE FEK+
Sbjct:   210 HTHEFGKETHVEED-TWRRTCITCEYEEVFEKL 241

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040025 "vulval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0009411 "response to UV" evidence=IGI;IMP

GO:0006974 "response to DNA damage stimulus" evidence=IGI;IMP

GO:0000003 "reproduction" evidence=IMP

GO:0010225 "response to UV-C" evidence=IMP

UNIPROTKB|F2Z2T2 XPA "DNA repair protein-complementing XP-A cells" [Homo sapiens (taxid:9606)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 81/208 (38%), Positives = 118/208 (56%)

Query:    50 PNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLL 109
             P  V+A + +         Q+   R   R   A +      + N   +    DTGGGF+L
Sbjct:    21 PASVRASIERKRQRALMLRQA---RLAARPYSATAAAATGGMANVKAAPKIIDTGGGFIL 77

Query:   110 DYDDKYEEKY---IKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKH 166
             + +++ E+K    + QP P++ E +   C EC K+F  S+L + F    CD+CRD + KH
Sbjct:    78 EEEEEEEQKIGKVVHQPGPVM-EFDYVICEECGKEFMDSYLMNHFDLPTCDNCRDADDKH 136

Query:   167 CLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGS 226
              L+T+T+AK EYLLKDCDL+KREP L+F+  KNPH+  WGDMKLYL LQ+ +R++EVWGS
Sbjct:   137 KLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGS 196

Query:   227 XXXXXXXXXXXXXKASNSKLKQYNKKIK 254
                               K K+++KK+K
Sbjct:   197 QEALEEAKEVRQENREKMKQKKFDKKVK 224

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P27089	XPA_CHICK	No assigned EC number	0.5	0.6421	0.7528	yes	N/A
P28518	XPA_DROME	No assigned EC number	0.4219	0.8466	0.8952	yes	N/A
Q64267	XPA_MOUSE	No assigned EC number	0.4020	0.7955	0.9154	yes	N/A
P23025	XPA_HUMAN	No assigned EC number	0.4041	0.8019	0.9194	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	313
TIGR00598	172	TIGR00598, rad14, DNA repair protein	3e-70
COG5145	292	COG5145, RAD14, DNA excision repair protein [DNA r	7e-29
pfam05181	52	pfam05181, XPA_C, XPA protein C-terminus	6e-19
pfam01286	34	pfam01286, XPA_N, XPA protein N-terminal	2e-06

>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein

 Score =  215 bits (549), Expect = 3e-70
 Identities = 99/173 (57%), Positives = 125/173 (72%), Gaps = 1/173 (0%)

Query: 135 CVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRF 194
           C EC K F  S+L+D F  +VCD+CRD + K+ L+T+T+AK EYLLKDCDLDKREP+LR 
Sbjct: 1   CEECGKIFMDSYLFDHFDCAVCDNCRDKDDKYKLLTKTEAKEEYLLKDCDLDKREPLLRR 60

Query: 195 LRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIK 254
           +  KNPHN  WGDMKLYL LQVE+RA+EVWGSEE L++E+ERR E     K K++ KK+K
Sbjct: 61  IVKKNPHNPRWGDMKLYLKLQVEKRALEVWGSEEALDEEKERREESKEEMKEKKFEKKLK 120

Query: 255 ALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
            LR AVRSS +         H H+FG E +  E+DTY R C+TC  EET+EK+
Sbjct: 121 ELRRAVRSSEYTNKKEG-RVHEHEFGPETNGVEEDTYRRTCTTCGLEETYEKM 172

All proteins in this family for which functions are known are used for the recognition of DNA damage as part of nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 172

>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication, recombination, and repair]

 Score =  112 bits (280), Expect = 7e-29
 Identities = 71/199 (35%), Positives = 103/199 (51%), Gaps = 4/199 (2%)

Query: 105 GGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDG-E 163
           G F  +  D+ +E     P  L +    P C EC +      L D FG SVC SCR    
Sbjct: 90  GEFFAEEQDERKEVREDAPILLPIAL-APKCKECLQIELDDELEDTFGISVCRSCRHSMP 148

Query: 164 SKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEV 223
            K+ L+T+T+ K++YLL D +L K + + R L+  NPH   W  M LYL  +VEQ AI+ 
Sbjct: 149 DKYKLLTKTECKSDYLLTDPEL-KDQELFRRLQKPNPHKGTWSKMHLYLREEVEQFAIKK 207

Query: 224 WGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRSSLFNKIST-SPSSHSHQFGME 282
           WGS EEL++E++RR +   + K K+  KKIK LR   R+S ++++       H H F   
Sbjct: 208 WGSLEELDREKQRREKMKDDRKEKKLEKKIKELRRKTRTSNYSRMDVREKEKHVHVFDEF 267

Query: 283 VHNEEDDTYTRKCSTCDFE 301
           V    +     +  +C  E
Sbjct: 268 VDGPNEPGVIIQRCSCGLE 286

Length = 292

>gnl|CDD|147390 pfam05181, XPA_C, XPA protein C-terminus

 Score = 78.5 bits (194), Expect = 6e-19
 Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 164 SKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQV 216
            K+ L+T+T+ K +YLL D +L  RE +L  L   NPH   WGDM LYL  QV
Sbjct: 1   EKYSLLTKTECKEDYLLTDPELKDRE-LLPHLLKPNPHKSTWGDMMLYLRCQV 52

Length = 52

>gnl|CDD|189926 pfam01286, XPA_N, XPA protein N-terminal

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 131 EQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGE 163
           + P C EC K F  S+L++ F  +VCD+CRD E
Sbjct: 2   DYPICEECGKPFMDSYLFNHFDCAVCDACRDAE 34

Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
KOG4017|consensus	274		100.0
TIGR00598	172	rad14 DNA repair protein. This family is based on	100.0
COG5145	292	RAD14 DNA excision repair protein [DNA replication	100.0
PF05181	52	XPA_C: XPA protein C-terminus; InterPro: IPR022656	99.92
PF01286	34	XPA_N: XPA protein N-terminal; InterPro: IPR022652	99.12
KOG2802|consensus	503		98.98
PF12677	49	DUF3797: Domain of unknown function (DUF3797); Int	82.16

>KOG4017|consensus

Probab=100.00  E-value=2.9e-81  Score=576.51  Aligned_cols=253  Identities=45%  Similarity=0.736  Sum_probs=225.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccCCCCCCCCCCCCCCcccccccCCCCCCCcccceee
Q psy5133          14 SKTISLSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRSIIN   93 (313)
Q Consensus        14 ~~~~~lT~eq~~rIE~NR~kAl~lr~~r~~~~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~r~~~~~~~~~~~~~~k   93 (313)
                      ..++.|+..++. |++++..|...+++.+  +.+||.++                                ...+.++|+
T Consensus        15 eq~s~l~~~~k~-i~r~~~~a~~~~k~~l--~~rp~~~~--------------------------------s~~~~~~i~   59 (274)
T KOG4017|consen   15 EQPSALPNTNKN-IERYGSGAVDGRKAVL--VKRPYDAA--------------------------------SERGQDYIE   59 (274)
T ss_pred             cchhhhhhhhhh-hhhccchhhhhhhhhh--hcCccchh--------------------------------hhcCcccee
Confidence            355669999999 9999999999999999  78887631                                011246788


Q ss_pred             eecccceeecCCcccccCCChhh-----hhccCCCCC-CCC-cCCCcccccccccCCchhHHhhcCccccccccCCCccc
Q psy5133          94 AVGSKLFTDTGGGFLLDYDDKYE-----EKYIKQPAP-LLL-ESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKH  166 (313)
Q Consensus        94 ~y~~sk~~Dt~GGFl~ee~~~~~-----~~~~~ep~p-i~~-~~~~~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~~~~k~  166 (313)
                       || ++|+|||||||+++++..+     ....+++.| ++. -...|+|.+|+++|||+||+++|||+||++||+..++|
T Consensus        60 -~~-~k~~d~~GGf~~e~~~~~~~~~~~~e~re~~~~~l~d~i~~~~~C~eC~~i~mDs~L~~~F~~~VCd~CRd~~eky  137 (274)
T KOG4017|consen   60 -YD-MKIIDTGGGFILEKDKVPESREFESEVREKEEPLLPDHIALAPKCEECDKIEMDSYLFDTFGCSVCDSCRDKDEKY  137 (274)
T ss_pred             -ec-ceeecCCCceeccccccchhHHHHHHhhcccccccccchhhchhHHHhcCccchHHHHHhcCChhhhHhhhhhhhh
Confidence             99 9999999999999876433     233445555 431 12237799999999999999999999999999999999


Q ss_pred             ccccccccccccccCCCCcCCCCccccceeccCCCCCCCCCcchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHH
Q psy5133         167 CLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKL  246 (313)
Q Consensus       167 ~LiTkTeak~dYlL~d~DL~~re~~L~~i~k~NPh~~~w~~MkLYlr~QVe~~A~~~WGS~E~Le~E~erRe~~r~~~K~  246 (313)
                      +||||||||++||||||||++++ +|+||.|+|||+++||+|+|||++|||+||++||||+|+|++++|+|++.++.+|+
T Consensus       138 kLlTkTEcK~eYLLtD~eL~~re-~l~~l~k~NPH~~~wg~MkLYL~~qVe~falekWGS~E~Le~~~e~Re~~ke~rke  216 (274)
T KOG4017|consen  138 KLLTKTECKSEYLLTDCELDDRE-LLRRLQKKNPHNGTWGDMKLYLRCQVEQFALEKWGSEEELEREKERREEMKEERKE  216 (274)
T ss_pred             heeehhhhhhhhhccCccccchh-hhHHhhcCCCCCCchhhhhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998 89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCCcccccCCccccCCCCceeeecCCCCCeeeeeeh
Q psy5133         247 KQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI  307 (313)
Q Consensus       247 Kkf~kklkeLRk~tR~s~~~k~~~~~~~H~H~fg~e~~~~e~~~y~k~C~~CG~ev~yEkm  307 (313)
                      |||+||||+||++||+|.|++.  ....|+|+||+++ +.++|+|..+|++|||+++||||
T Consensus       217 kKfeKKiKeLR~~tRts~~~r~--~~~~H~Hef~~e~-~~eEd~y~~tc~~Cg~e~e~ekl  274 (274)
T KOG4017|consen  217 KKFEKKIKELRRKTRTSMYKRS--SEEKHVHEFGPET-GIEEDGYRITCCTCGLEEEQEKL  274 (274)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhc--cccccceecCCCC-CCCCCcceeEeecccchhhhhcC
Confidence            9999999999999999999987  3589999999998 89999999999999999999997

>TIGR00598 rad14 DNA repair protein

Probab=100.00  E-value=2.1e-70  Score=483.88  Aligned_cols=172  Identities=58%  Similarity=1.008  Sum_probs=167.7

Q ss_pred             cccccccCCchhHHhhcCccccccccCCCcccccccccccccccccCCCCcCCCCccccceeccCCCCCCCCCcchhhHH
Q psy5133         135 CVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSL  214 (313)
Q Consensus       135 C~eC~~~~~Ds~l~~~F~~~VC~~Cr~~~~k~~LiTkTeak~dYlL~d~DL~~re~~L~~i~k~NPh~~~w~~MkLYlr~  214 (313)
                      |.+||+.||||+|+++|+++||++|++..++|+|||+|+||+||||+|+||++++|+|+||.|+|||+++|++|+|||++
T Consensus         1 C~eCg~~~~D~~l~~~F~~~vC~~C~~~~ek~~liTkTeak~dYlL~d~dL~~~e~~L~~i~k~NPh~~~~~~MkLYlr~   80 (172)
T TIGR00598         1 CEECGKIFMDSYLFDHFDCAVCDNCRDKDDKYKLLTKTEAKEEYLLKDCDLDKREPLLRRIVKKNPHNPRWGDMKLYLKL   80 (172)
T ss_pred             CccccchhhhHHHHHHCCChhhhhhhccccccccccHHHHHHHhcCChhhhhcchhhchhcccCCCCCCCcccceeehHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccCCccccCCCCceeee
Q psy5133         215 QVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRK  294 (313)
Q Consensus       215 QVe~~A~~~WGS~E~Le~E~erRe~~r~~~K~Kkf~kklkeLRk~tR~s~~~k~~~~~~~H~H~fg~e~~~~e~~~y~k~  294 (313)
                      |||++|++||||+|+|++|+++|+++++++|+|||+++|++||++||+++|++. +.+..|+|+||++++|+++|+|+|+
T Consensus        81 qVe~~A~~~wGS~E~L~~E~e~Re~~k~~~kekkf~kklkelR~~~R~~~y~~~-~~~~~H~H~f~~~~~~~e~~~~~k~  159 (172)
T TIGR00598        81 QVEKRALEVWGSEEALDEEKERREESKEEMKEKKFEKKLKELRRAVRSSEYTNK-KEGRVHEHEFGPETNGVEEDTYRRT  159 (172)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCcccccCCcccccccCCceeee
Confidence            999999999999999999999999999999999999999999999999999754 2478999999999999999999999


Q ss_pred             cCCCCCeeeeeeh
Q psy5133         295 CSTCDFEETFEKI  307 (313)
Q Consensus       295 C~~CG~ev~yEkm  307 (313)
                      |++|||+|+||+|
T Consensus       160 C~~Cg~e~~~e~m  172 (172)
T TIGR00598       160 CTTCGLEETYEKM  172 (172)
T ss_pred             cCCCCceEEEEeC
Confidence            9999999999998

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5145 RAD14 DNA excision repair protein [DNA replication, recombination, and repair]

Probab=100.00  E-value=6.5e-61  Score=438.07  Aligned_cols=214  Identities=37%  Similarity=0.621  Sum_probs=190.8

Q ss_pred             cceeeeecccceeecCCcccccCCChh------------------hhhccCCCCC--CCCcCCCcccccccccCCchhHH
Q psy5133          89 RSIINAVGSKLFTDTGGGFLLDYDDKY------------------EEKYIKQPAP--LLLESEQPTCVECKKKFPQSFLY  148 (313)
Q Consensus        89 ~~~~k~y~~sk~~Dt~GGFl~ee~~~~------------------~~~~~~ep~p--i~~~~~~~~C~eC~~~~~Ds~l~  148 (313)
                      +.||+ ||||+|-|++||||++++.-+                  +.+.+.+.+|  +++... |+|.+|.++.+|..|.
T Consensus        55 kdyie-ydfs~ie~~~ggyl~~~~kv~d~~e~~p~e~ef~~~eq~eRk~~~e~ap~~l~i~~a-pkC~eC~~IelD~~l~  132 (292)
T COG5145          55 KDYIE-YDFSKIEDTKGGYLLEEKKVEDLMENAPQEGEFFAEEQDERKEVREDAPILLPIALA-PKCKECLQIELDDELE  132 (292)
T ss_pred             hhhhh-hhhHhhhccCCcccCchhhHHHHhhcCchhcchhhhhHHHHHHHhhcCCCCCChhhC-ccceeeeeeecchHHH
Confidence            57888 999999999999999863311                  1234667777  455554 9999999999999999


Q ss_pred             hhcCccccccccCC-CcccccccccccccccccCCCCcCCCCccccceeccCCCCCCCCCcchhhHHHHHHHHHHHhCCH
Q psy5133         149 DKFGHSVCDSCRDG-ESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSE  227 (313)
Q Consensus       149 ~~F~~~VC~~Cr~~-~~k~~LiTkTeak~dYlL~d~DL~~re~~L~~i~k~NPh~~~w~~MkLYlr~QVe~~A~~~WGS~  227 (313)
                      .+|+++||.+|+.. |+||+|||||+||.||||||++|.+ +.+|++|.|+|||.++|+.|+||||+|||++|+.+|||+
T Consensus       133 d~F~~~VC~~Cr~~~pdky~llTKTeCk~dYlLTdpEL~d-qelf~rL~kpNPH~gtws~M~Lylr~eVE~FA~kKWGs~  211 (292)
T COG5145         133 DTFGISVCRSCRHSMPDKYKLLTKTECKSDYLLTDPELKD-QELFRRLQKPNPHKGTWSKMHLYLREEVEQFAIKKWGSL  211 (292)
T ss_pred             hhhcchhHHhhhhhcchhhhhhhhhhhhhhhhcCChhhcc-hHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHhcccH
Confidence            99999999999999 9999999999999999999999986 669999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcccc-CCCCCCcccccCCccccC-CCCceeeecCCCCCeeeee
Q psy5133         228 EELEQERERRAEKASNSKLKQYNKKIKALRMAVRSSLFNKI-STSPSSHSHQFGMEVHNE-EDDTYTRKCSTCDFEETFE  305 (313)
Q Consensus       228 E~Le~E~erRe~~r~~~K~Kkf~kklkeLRk~tR~s~~~k~-~~~~~~H~H~fg~e~~~~-e~~~y~k~C~~CG~ev~yE  305 (313)
                      |+|++||++|+..+..+|+|||.++|++||++||++.|++. ++....|||.|+.++..+ +.|....+| +||++|+-+
T Consensus       212 E~ld~e~qrRe~~k~~rkekK~ekkikelR~kTrt~~ysrm~vRek~kHvH~f~e~vdg~~e~g~~iqRC-~CGlevEq~  290 (292)
T COG5145         212 EELDREKQRREKMKDDRKEKKLEKKIKELRRKTRTSNYSRMDVREKEKHVHVFDEFVDGPNEPGVIIQRC-SCGLEVEQE  290 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhcceeeccccccCCCCCCeEEEec-ccccchhhc
Confidence            99999999999999999999999999999999999999986 555667999999887443 447778999 999999865


Q ss_pred             e
Q psy5133         306 K  306 (313)
Q Consensus       306 k  306 (313)
                      .
T Consensus       291 e  291 (292)
T COG5145         291 E  291 (292)
T ss_pred             c
Confidence            4

>PF05181 XPA_C: XPA protein C-terminus; InterPro: IPR022656 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer

Probab=99.92  E-value=1.5e-26  Score=169.12  Aligned_cols=52  Identities=62%  Similarity=1.092  Sum_probs=40.7

Q ss_pred             cccccccccccccccccCCCCcCCCCccccceeccCCCCCCCCCcchhhHHHH
Q psy5133         164 SKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQV  216 (313)
Q Consensus       164 ~k~~LiTkTeak~dYlL~d~DL~~re~~L~~i~k~NPh~~~w~~MkLYlr~QV  216 (313)
                      +||+||||||||+||||+|+||++++ +|+||.|+|||+++|++|+||||+||
T Consensus         1 ek~~LiTkTeak~dYlL~d~dL~~~~-~L~~i~k~NPH~~~w~~MkLyLr~QV   52 (52)
T PF05181_consen    1 EKYSLITKTEAKEDYLLTDCDLDDRE-LLPFIEKPNPHNSTWGDMKLYLRCQV   52 (52)
T ss_dssp             SSS--EEHHHHCCCTT--SSTTTTSS-S--EEESS-SSSS-TTS-EEE-HHHH
T ss_pred             CcccceehhhhhhhhccCcccccccc-cccccccCCCCCCCccCeeEEEeecC
Confidence            58999999999999999999999988 89999999999999999999999998

Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry describes the uncharacterised C-terminal in the XPA protein; PDB: 1D4U_A 1XPA_A.

>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer

Probab=99.12  E-value=6.7e-12  Score=84.99  Aligned_cols=30  Identities=50%  Similarity=1.085  Sum_probs=20.6

Q ss_pred             cccccccccCCchhHHhhcCccccccccCC
Q psy5133         133 PTCVECKKKFPQSFLYDKFGHSVCDSCRDG  162 (313)
Q Consensus       133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~~  162 (313)
                      +.|.+||++|+||||+++|++.||++||++
T Consensus         4 ~~C~eC~~~f~dSyL~~~F~~~VCD~CRD~   33 (34)
T PF01286_consen    4 PKCDECGKPFMDSYLLNNFDLPVCDKCRDK   33 (34)
T ss_dssp             EE-TTT--EES-SSCCCCTS-S--TTT-ST
T ss_pred             chHhHhCCHHHHHHHHHhCCccccccccCC
Confidence            569999999999999999999999999985

Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.

>KOG2802|consensus

Probab=98.98  E-value=4.4e-10  Score=110.78  Aligned_cols=92  Identities=30%  Similarity=0.532  Sum_probs=76.3

Q ss_pred             ccccccccccccccccCCCCcCCCCccccceeccCCCCCCCCCcchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q psy5133         165 KHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNS  244 (313)
Q Consensus       165 k~~LiTkTeak~dYlL~d~DL~~re~~L~~i~k~NPh~~~w~~MkLYlr~QVe~~A~~~WGS~E~Le~E~erRe~~r~~~  244 (313)
                      .-++||+..|..+|+|++.||.+    ||.+.+..||..+ ++|.+||+.+|+..|+++|||.|+|++|+ |++...-+.
T Consensus       109 e~n~i~~v~aiaeF~lk~s~led----l~K~r~~s~~~~~-ssh~~yl~sdv~~kal~v~gs~eaL~rer-rplve~yr~  182 (503)
T KOG2802|consen  109 ENNFITGVRAIAEFCLKSSDLED----LPKIRRRSPHEDT-SSHTVYLRSDVEAKALEVWGSPEALARER-RPLVEEYRE  182 (503)
T ss_pred             hhcccchhHHHHHhhccccchhh----cccccccCcccCC-CCceEEeehhhhhhhheeecCHHHHhhhh-hhHHHHHHH
Confidence            34569999999999999999996    9999999999999 99999999999999999999999999998 555553333


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy5133         245 KLKQYNKKIKALRMAVRS  262 (313)
Q Consensus       245 K~Kkf~kklkeLRk~tR~  262 (313)
                      ..-.+++.+.++|..+-.
T Consensus       183 ~l~~~~R~~~~~R~e~~n  200 (503)
T KOG2802|consen  183 RLFRNQRILREYRDELGN  200 (503)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            334445666677777654

>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised

Probab=82.16  E-value=0.62  Score=34.30  Aligned_cols=17  Identities=41%  Similarity=0.978  Sum_probs=14.6

Q ss_pred             CCCCceeeecCCCCCeee
Q psy5133         286 EEDDTYTRKCSTCDFEET  303 (313)
Q Consensus       286 ~e~~~y~k~C~~CG~ev~  303 (313)
                      .++|+|+++| .||+.|+
T Consensus        33 V~edtfkRtC-kCGfnie   49 (49)
T PF12677_consen   33 VEEDTFKRTC-KCGFNIE   49 (49)
T ss_pred             Eeccceeeee-ccccccC
Confidence            4789999999 8999874

This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
1d4u_A	111	Interactions Of Human Nucleotide Excision Repair Pr		4e-30
1xpa_A	122	Solution Structure Of The Dna-And Rpa-Binding Domai		8e-30

>pdb|1D4U|A Chain A, Interactions Of Human Nucleotide Excision Repair Protein Xpa With Rpa70 And Dna: Chemical Shift Mapping And 15n Nmr Relaxation Studies Length = 111

Iteration: 1
 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%)
Query: 128 LESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDK 187
           +E +   C EC K+F  S+L D F    CD CRD + KH L+T+T+AK EYLLKDCDL+K
Sbjct: 1   MEFDYVICEECGKEFMDSYLMDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKDCDLEK 60
Query: 188 REPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGS 226
           REP L+F+  KNPH+  WGDMKLYL LQ+ +R++EVWGS
Sbjct: 61  REPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGS 99

>pdb|1XPA|A Chain A, Solution Structure Of The Dna-And Rpa-Binding Domain Of The Human Repair Factor Xpa, Nmr, 1 Structure Length = 122

Iteration: 1
 Score =  127 bits (319), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 74/99 (74%)
Query: 128 LESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDK 187
           +E +   C EC K+F  S+L + F    CD+CRD + KH L+T+T+AK EYLLKDCDL+K
Sbjct: 1   MEFDYVICEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEK 60
Query: 188 REPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGS 226
           REP L+F+  KNPH+  WGDMKLYL LQ+ +R++EVWGS
Sbjct: 61  REPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGS 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
1d4u_A	111	Nucleotide excision repair protein XPA (XPA-MBD);	5e-44
2enk_A	101	HUEL, solute carrier family 30 member 9; cation tr	2e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A Length = 111

 Score =  145 bits (367), Expect = 5e-44
 Identities = 62/110 (56%), Positives = 81/110 (73%)

Query: 128 LESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDK 187
           +E +   C EC K+F  S+L D F    CD CRD + KH L+T+T+AK EYLLKDCDL+K
Sbjct: 1   MEFDYVICEECGKEFMDSYLMDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKDCDLEK 60

Query: 188 REPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERR 237
           REP L+F+  KNPH+  WGDMKLYL LQ+ +R++EVWGS+E LE+ +E R
Sbjct: 61  REPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVR 110

>2enk_A HUEL, solute carrier family 30 member 9; cation transporter, cobalt, zinc, cadmium, protein of unknown function DUF993, embryonic LUNG protein; NMR {Homo sapiens} Length = 101

 Score = 99.2 bits (247), Expect = 2e-26
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 6/99 (6%)

Query: 159 CRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQ 218
                +++  +T   A NE+ LK  DL++    LR +R ++PH        +YL   VE 
Sbjct: 5   SSGKYTQNNFITGVRAINEFCLKSSDLEQ----LRKIRRRSPHED-TESFTVYLRSDVEA 59

Query: 219 RAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALR 257
           +++EVWGS E L +E++ R E     + + +  + K LR
Sbjct: 60  KSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQ-KILR 97

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 3e-07
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 17/130 (13%)

Query: 142 FPQSFLYDKFGHSVCDSCR----DGESKHCLVTRTDAKNEYLLKDCDLDKREP-VLRFLR 196
           F  +F+ +     V D  +      E  H ++++        L    L K+E  V +F+ 
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 197 AKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYN----KK 252
                N  +    L   ++ EQR            ++R+R      N    +YN    + 
Sbjct: 85  EVLRINYKF----LMSPIKTEQRQPS--MMTRMYIEQRDRLYN--DNQVFAKYNVSRLQP 136

Query: 253 IKALRMAVRS 262
              LR A+  
Sbjct: 137 YLKLRQALLE 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 33/164 (20%)

Query: 89  RSIINAVGSKLFTDTGGGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECKKKFPQ---- 144
           RSI++        D     +  Y D+Y   +I      L   E P   E    F      
Sbjct: 447 RSIVDHYNIPKTFD-SDDLIPPYLDQYFYSHI---GHHLKNIEHP---ERMTLFRMVFLD 499

Query: 145 -SFLYDKFGHSVCDSCRDGESKHCLVTRTDAKN--EYLLKDCDLDKR--EPVLRFLRAKN 199
             FL  K  H        G   + L      K    Y+  +    +R    +L FL    
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL---QQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Query: 200 PH---NKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEK 240
            +   +K+  D+ L ++L  E         +E + +E  ++ ++
Sbjct: 557 ENLICSKY-TDL-LRIALMAE---------DEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
1d4u_A	111	Nucleotide excision repair protein XPA (XPA-MBD);	100.0
2enk_A	101	HUEL, solute carrier family 30 member 9; cation tr	99.97

>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A

Probab=100.00  E-value=7.1e-48  Score=319.39  Aligned_cols=111  Identities=55%  Similarity=1.057  Sum_probs=106.3

Q ss_pred             CCCcCCCcccccccccCCchhHHhhcCccccccccCCCcccccccccccccccccCCCCcCCCCccccceeccCCCCCCC
Q psy5133         126 LLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHW  205 (313)
Q Consensus       126 i~~~~~~~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~~~~k~~LiTkTeak~dYlL~d~DL~~re~~L~~i~k~NPh~~~w  205 (313)
                      |++++  ++|++||++|+|++|+++|+++||++|++.+++|+|||+|+||++|||+|+||++++++|+||.|+|||+++|
T Consensus         1 ~~~~~--~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~~~~~liTkt~ak~dYlL~d~dL~~~~~~L~~~~k~NPh~~~~   78 (111)
T 1d4u_A            1 MEFDY--VICEECGKEFMDSYLMDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQW   78 (111)
T ss_dssp             CCCCC--EECTTTCCEESCSSSTTTTSCCCCTTTCSSSSSCCCEEHHHHTTTTTCCSSSTTTSCCSCCEEESSCSSSCCC
T ss_pred             CCCCC--CccccCCChhhHHHHHHhCCeeechhhcccccccccccHHHHHHHHcCCchhhccccccCCeeccCCCCCCCC
Confidence            34566  4599999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy5133         206 GDMKLYLSLQVEQRAIEVWGSEEELEQERERRA  238 (313)
Q Consensus       206 ~~MkLYlr~QVe~~A~~~WGS~E~Le~E~erRe  238 (313)
                      ++|+|||++|||++|++||||+|+|++|+++|+
T Consensus        79 ~~MkLYlr~qVe~~A~~vwGS~E~Le~E~e~R~  111 (111)
T 1d4u_A           79 GDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQ  111 (111)
T ss_dssp             SCCEEECHHHHHHHHHHHTSSHHHHHHHHHHCC
T ss_pred             ccceeehHHHHHHHHHHHHCCHHHHHHHHHhhC
Confidence            999999999999999999999999999999984

>2enk_A HUEL, solute carrier family 30 member 9; cation transporter, cobalt, zinc, cadmium, protein of unknown function DUF993, embryonic LUNG protein; NMR {Homo sapiens}

Probab=99.97  E-value=3.3e-33  Score=227.90  Aligned_cols=85  Identities=32%  Similarity=0.600  Sum_probs=82.5

Q ss_pred             CcccccccccccccccccCCCCcCCCCccccceeccCCCCCCCCCcchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy5133         163 ESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKAS  242 (313)
Q Consensus       163 ~~k~~LiTkTeak~dYlL~d~DL~~re~~L~~i~k~NPh~~~w~~MkLYlr~QVe~~A~~~WGS~E~Le~E~erRe~~r~  242 (313)
                      +++|+|||+|+|+++|||+|+||++    |+||.++|||+++ ++|+|||++|||++||+||||+|+|++|+++|++++.
T Consensus         9 ~~~~~lITkteAk~dYlLkd~dL~~----L~~i~k~NPh~~~-~~MkLYlr~qVe~rAlevWGS~E~Le~E~e~R~~~r~   83 (101)
T 2enk_A            9 YTQNNFITGVRAINEFCLKSSDLEQ----LRKIRRRSPHEDT-ESFTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEI   83 (101)
T ss_dssp             CCCCSEEEHHHHHHHTCCCHHHHHH----SCCBCTTCSSCSS-CCCCEEEHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHCCChhhhhh----CcccccCCCCCCC-CCceeehHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999995    9999999999999 9999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHH
Q psy5133         243 NSKLKQYNKK  252 (313)
Q Consensus       243 ~~K~Kkf~kk  252 (313)
                      ++++|+|..|
T Consensus        84 ~~~~k~f~~k   93 (101)
T 2enk_A           84 EYRERLFRNQ   93 (101)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1d4ua1	75	a.6.1.2 (A:37-111) DNA repair factor XPA DNA- and	9e-35
d1d4ua2	36	g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and R	1e-08

>d1d4ua1 a.6.1.2 (A:37-111) DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: All alpha proteins
fold: Putative DNA-binding domain
superfamily: Putative DNA-binding domain
family: DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain
domain: DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 9e-35
 Identities = 47/73 (64%), Positives = 61/73 (83%)

Query: 165 KHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVW 224
           KH L+T+T+AK EYLLKDCDL+KREP L+F+  KNPH+  WGDMKLYL LQ+ +R++EVW
Sbjct: 2   KHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVW 61

Query: 225 GSEEELEQERERR 237
           GS+E LE+ +E R
Sbjct: 62  GSQEALEEAKEVR 74

>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
domain: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 1e-08
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 128 LESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGE 163
           +E +   C EC K+F  S+L D F    CD CRD +
Sbjct: 1   MEFDYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1d4ua1	75	DNA repair factor XPA DNA- and RPA-binding domain,	100.0
d1d4ua2	36	DNA repair factor XPA DNA- and RPA-binding domain,	99.26

>d1d4ua1 a.6.1.2 (A:37-111) DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Putative DNA-binding domain
superfamily: Putative DNA-binding domain
family: DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain
domain: DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-37  Score=237.95  Aligned_cols=75  Identities=63%  Similarity=1.135  Sum_probs=73.3

Q ss_pred             cccccccccccccccccCCCCcCCCCccccceeccCCCCCCCCCcchhhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy5133         164 SKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRA  238 (313)
Q Consensus       164 ~k~~LiTkTeak~dYlL~d~DL~~re~~L~~i~k~NPh~~~w~~MkLYlr~QVe~~A~~~WGS~E~Le~E~erRe  238 (313)
                      +||+|||+|+||+||||+|+||++++|+|+||.|+|||+++|++|+|||++|||++|++||||+|+|++|+++|+
T Consensus         1 ek~~liTkTeak~dYlL~d~dL~~~e~~L~~i~k~NPh~~~~~~MkLYlr~qVE~~A~e~WGs~E~L~~E~~~Re   75 (75)
T d1d4ua1           1 DKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQ   75 (75)
T ss_dssp             SSCCCEEHHHHTTTTTCCSSSTTTSCCSCCEEESSCSSSCCCSCCEEECHHHHHHHHHHHTSSHHHHHHHHHHCC
T ss_pred             CccchhhHHHHHHHhcCCchhhccccccccccccCCCCCCCCCCceeeehHHHHHHHHHHHCCHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999999999999999999999999999999999984

>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
domain: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.7e-13  Score=88.64  Aligned_cols=35  Identities=40%  Similarity=0.881  Sum_probs=31.9

Q ss_pred             CCCcCCCcccccccccCCchhHHhhcCccccccccCC
Q psy5133         126 LLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDG  162 (313)
Q Consensus       126 i~~~~~~~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~~  162 (313)
                      |.++|..  |.|||+.|+||||+++|+++|||+||+.
T Consensus         1 ~e~dy~~--C~eCg~~F~DSYL~~~Fd~~vCD~CRD~   35 (36)
T d1d4ua2           1 MEFDYVI--CEECGKEFMDSYLMDHFDLPTCDDCRDA   35 (36)
T ss_dssp             CCCCCEE--CTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred             CCccHHH--HHHhCcHHHHHHHHHcCCchhcccccCC
Confidence            3567776  9999999999999999999999999985