Diaphorina citri psyllid: psy5142


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
MAETDSSATNGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLMNEKKSGRKFGKKGPRGTKRSRGGNFESNKKAKVE
cccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHcccccEEEHHHHHccHHHHHccccHHHHHHHHHHccccEEEEcccccEEEcccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccEEEEEEcccccHHHcccccccEEEEEEccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHcccccccEEEEEEccccEEEEEcccHHHHHHHHHHHccccEEEccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
***********************NQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE*******************KFNENCEHSLLIKWQ************************************VLELPTGALLKISDIKE*V**EDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFK****************************************
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MAETDSSATNGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLMNEKKSGRKFGKKGPRGTKRSRGGNFESNKKAKVE

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
La protein homolog May be involved in transcription termination by RNA polymerase III. Binds RNA and DNA. Binds to precursors of RNA polymerase III transcripts. May play a specialized role during fly development.confidentP40796
Lupus La protein homolog Binds to the 3' poly(U) terminii of nascent RNA polymerase III transcripts, protecting them from exonuclease digestion and facilitating their folding and maturation.confidentP10881
Lupus La protein homolog Binds to the 3' poly(U) terminii of nascent RNA polymerase III transcripts, protecting them from exonuclease digestion and facilitating their folding and maturation.confidentP38656

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005634 [CC]nucleusprobableGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226
GO:0005737 [CC]cytoplasmprobableGO:0044424, GO:0005575, GO:0044464, GO:0005623, GO:0005622

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2VOO, chain A
Confidence level:very confident
Coverage over the Query: 19-196,220-235
View the alignment between query and template
View the model in PyMOL
Template: 1OWX, chain A
Confidence level:very confident
Coverage over the Query: 269-377
View the alignment between query and template
View the model in PyMOL
Template: 3PGW, chain A
Confidence level:confident
Coverage over the Query: 117-196,220-237
View the alignment between query and template
View the model in PyMOL