Diaphorina citri psyllid: psy5196


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
MTIASSSSSSSISSAASGAGSKGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICRGLPPELSDYD
ccccccccccccccccccccccccccccccccccccccccEEEEEcEEEEEEECcccCEEEEEEEEEccccccccHHHHHHHHHHHHcccccCECcccccEECcccccccccccEEEEEECcccccccEEEEEEEEEEEccHHHHHHHHHccccccHHHHHHHHHHHHccccccccEEECccCCccccccccCCcccccEEEEEEEEEEECccccCEEEEEccEEcccccccHHHHHHHHHHcccccccccc
**************************************GRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICRGL********
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTIASSSSSSSISSAASGAGSKGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICRGLPPELSDYD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

No confident close homologs for annotation transfering were detected in SWISSPROT

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0035278 [BP]negative regulation of translation involved in gene silencing by miRNAprobableGO:0009892, GO:0080090, GO:0009890, GO:0051246, GO:0031327, GO:0031326, GO:0031324, GO:0031323, GO:0040029, GO:0010629, GO:0050789, GO:0044699, GO:0051248, GO:0010605, GO:0019222, GO:0010608, GO:2000112, GO:2000113, GO:0016458, GO:0065007, GO:0045974, GO:0010468, GO:0060255, GO:0009987, GO:0009889, GO:0050794, GO:0016441, GO:0044763, GO:0031047, GO:0048519, GO:0040033, GO:0032269, GO:0032268, GO:0035194, GO:0035195, GO:0010556, GO:0017148, GO:0006417, GO:0008150, GO:0010558, GO:0048523
GO:0004521 [MF]endoribonuclease activityprobableGO:0016787, GO:0004518, GO:0004519, GO:0004540, GO:0016788, GO:0003824, GO:0003674
GO:0035197 [MF]siRNA bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0000932 [CC]cytoplasmic mRNA processing bodyprobableGO:0005737, GO:0035770, GO:0043232, GO:0044464, GO:0043229, GO:0005623, GO:0030529, GO:0005575, GO:0044444, GO:0043228, GO:0044424, GO:0032991, GO:0005622, GO:0043226
GO:0035068 [CC]micro-ribonucleoprotein complexprobableGO:0032991, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424, GO:0030529
GO:0006402 [BP]mRNA catabolic processprobableGO:0090304, GO:0034641, GO:0006807, GO:1901360, GO:1901361, GO:0006139, GO:1901575, GO:0044265, GO:0044260, GO:0071704, GO:0006401, GO:0044238, GO:0009987, GO:0006725, GO:0046700, GO:0008150, GO:0008152, GO:0034655, GO:0009056, GO:0009057, GO:0044248, GO:0046483, GO:0016070, GO:0016071, GO:0044270, GO:0044237, GO:0043170, GO:0019439

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 4F3T, chain A
Confidence level:very confident
Coverage over the Query: 25-243
View the alignment between query and template
View the model in PyMOL