Psyllid ID: psy5196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MTIASSSSSSSISSAASGAGSKGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICRGLPPELSDYD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccEEEEEcEEEEEEEEcccEEEEEEEEEEccccccccHHHHHHHHHHHHcccccEEEcccccEEEcccccccccccEEEEEEEcccccccEEEEEEEEEEEccHHHHHHHHHccccccHHHHHHHHHHHHccccccccEEEEccEEccccccccEEcccccEEEEEEEEEEEEccccEEEEEEccEEcccccccHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHHccccccccccccEEccccccccccEEEEEEEccccccccEEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHcccccccEcEccccccccccccccccccccEEEEHcccccccHcHcccEEEEccHHHHcccHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mtiasssssssissaasgagskglyqiprrsnkdggtlgrrtqvdtnhfaitfknpnlvifhydvaidpdkpvrymrpVMQKVAreyfpnspcgydgkknlfskgtlpfgtamnctvsifdeermkdKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVlrepcslnanfvrvgrsyfsppdpnrlvdlgdglhlwngfyqsagigwrpylnvdvahkgfpeekSVIKVIDEICrglppelsdyd
Flexible Loop (DISEMBL)
mtiasssssssissaasgagskglyqiprrsnkdggtlgrrTQVDTNHFAItfknpnlvIFHYDVaidpdkpvrYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRvgrsyfsppdpNRLVDLGDGLHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICrglppelsdyd
Low Complexity Region (SEG)
MTiasssssssissaasgagsKGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICRGLPPELSDYD
Disordered region (IsUnstruct)
******************************************QVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICRGL********
Disordered Region (DISOPRED)
**************************************GRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEI************
Disordered Region (DISEMBL)
**********************GLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICRGLPPELSDYD
Disordered Region (DISPRO)
************************YQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICRGL********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIASSSSSSSISSAASGAGSKGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICRGLPPELSDYD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q9VUQ5	1214	Protein argonaute-2 OS=Dr	yes	N/A	0.789	0.163	0.330	1e-25
Q4KLV6	884	Protein argonaute-4 OS=Xe	N/A	N/A	0.825	0.235	0.342	2e-23
Q69VD5	979	Protein argonaute PNH1 OS	yes	N/A	0.773	0.199	0.361	2e-23
Q851R2	1058	Protein argonaute MEL1 OS	yes	N/A	0.813	0.193	0.360	7e-23
Q6Z4F1	1052	Protein argonaute 14 OS=O	no	N/A	0.777	0.186	0.373	3e-22
O04379	1048	Protein argonaute 1 OS=Ar	yes	N/A	0.900	0.216	0.345	7e-22
Q8CJG1	857	Protein argonaute-1 OS=Mu	yes	N/A	0.829	0.243	0.337	8e-22
Q9UL18	857	Protein argonaute-1 OS=Ho	yes	N/A	0.829	0.243	0.337	8e-22
Q8CJF8	861	Protein argonaute-4 OS=Mu	no	N/A	0.825	0.241	0.333	3e-21
Q9HCK5	861	Protein argonaute-4 OS=Ho	no	N/A	0.825	0.241	0.333	3e-21

>sp|Q9VUQ5|AGO2_DROME Protein argonaute-2 OS=Drosophila melanogaster GN=AGO2 PE=1 SV=3

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 36  GTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGY 95
           GT+G+  QV  N+  +       V +HYDV I P++P ++ R   ++   +    +   Y
Sbjct: 408 GTIGKPGQVGINYLDLDLSKMPSVAYHYDVKIMPERPKKFYRQAFEQFRVDQLGGAVLAY 467

Query: 96  DGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQE--ISFASIVEFMRTGV 153
           DGK + +S   LP  +  N  V++ D    +   Y +EIK+  +  I   S+  +M   +
Sbjct: 468 DGKASCYSVDKLPLNS-QNPEVTVTDRNG-RTLRYTIEIKETGDSTIDLKSLTTYMNDRI 525

Query: 154 -NRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGI 212
            ++P  A+Q ++VVL  PC   A  +RVGRS+F   DPN   +L DG     G YQ+  +
Sbjct: 526 FDKPMRAMQCVEVVLASPCHNKA--IRVGRSFFKMSDPNNRHELDDGYEALVGLYQAFML 583

Query: 213 GWRPYLNVDVAHKGFPEEKSVIKVID 238
           G RP+LNVD++HK FP    +I+ ++
Sbjct: 584 GDRPFLNVDISHKSFPISMPMIEYLE 609

Essential for RNA interference (RNAi); double-stranded RNA induces potent and specific gene silencing. RNAi is mediated by the RNA-induced silencing complex (RISC), a sequence-specific, multicomponent nuclease that destroys or silences messenger RNAs homologous to the silencing trigger.
Drosophila melanogaster (taxid: 7227)

>sp|Q4KLV6|AGO4_XENLA Protein argonaute-4 OS=Xenopus laevis GN=eif2c4 PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 123/225 (54%), Gaps = 17/225 (7%)

Query: 24  LYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQK 82
           L+Q PRR     GTLG+  ++  NHF +    P + ++HYDV I P+K P R  R V+  
Sbjct: 35  LFQPPRRPGL--GTLGKPIRLLANHFQVQI--PKIDVYHYDVDIKPEKRPRRVNREVVDT 90

Query: 83  VAREY----FPNSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKKA 137
           + R +    F ++  GYDGK+N+++   LP G   ++  V++  E   KD+ +KV I+  
Sbjct: 91  MVRHFKMPIFGDNQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEG--KDQTFKVTIQWV 148

Query: 138 QEISFASIVEFMRTGVNR-PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDL 196
             +S   ++E +   ++  P  ++QALDV+ R   S+   +  VGRS+FSPP+      L
Sbjct: 149 SVVSLQLLLEALSGHLSEVPDDSVQALDVITRHLPSM--RYTPVGRSFFSPPE-GYYHPL 205

Query: 197 GDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
           G G  +W GF+QS     W   LN+DV+   F   + VI+ + E+
Sbjct: 206 GGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEV 250

Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs.

Xenopus laevis (taxid: 8355)

>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 116/221 (52%), Gaps = 26/221 (11%)

Query: 36  GTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYM-RPVMQKVAREYFPNSPCG 94
           GT+G R  V  NHF     + +L    YDV I P+   R + R +M ++ R Y  +   G
Sbjct: 131 GTVGARCVVKANHFLAELPDKDLT--QYDVKITPEVSSRSVNRAIMSELVRLYHDSDLGG 188

Query: 95  ----YDGKKNLFSKGTLPFGTAMNCTVSIFDEERM-----KDKEYKVEIKKAQEISFASI 145
               YDG+KNL++ GTLPF  A    V + D++       +++EY+V IK A       +
Sbjct: 189 RLPAYDGRKNLYTAGTLPFD-AREFVVRLTDDDDGTGVPPREREYRVAIKFAARADLHHL 247

Query: 146 VEFMR-TGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWN 204
            +F+     + PQ A+Q LD+VLRE    N  +V +GRS++SP D  +   LGDGL  W 
Sbjct: 248 RQFIAGRQADAPQEALQVLDIVLRELA--NRRYVSIGRSFYSP-DIRKPQRLGDGLQSWC 304

Query: 205 GFYQSAGIGWRPY-----LNVDVAHKGFPEEKSVIKVIDEI 240
           GFYQS     RP      LN+D++   F E   VI+ + +I
Sbjct: 305 GFYQSI----RPTQMGLSLNIDMSSTAFIEPLPVIEFVAQI 341

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). Plays a role in the maintenance of the indeterminate state of the stem cells in the shoot apical meristem (SAM). Regulates leaf formation through vascular development and may be involved in determining the central domain of the leaf founder region.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1

 Score =  107 bits (267), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/236 (36%), Positives = 126/236 (53%), Gaps = 31/236 (13%)

Query: 36  GTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYM-RPVMQKVAREYFPNSPCG 94
           G  G++  +  NHF +   + NL  FHYDV+I+P+   R   R V+ ++ + +   S  G
Sbjct: 206 GAAGKKVMIRANHFLVNVADNNL--FHYDVSINPESKSRATNREVLNELIKLHGKTSLGG 263

Query: 95  ----YDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKE-----YKVEIKKAQEISFASI 145
               YDG+K+L++ G+LPF +     V + D E+ KDKE     YK+ I+ A       +
Sbjct: 264 KLPAYDGRKSLYTAGSLPFESE-EFVVKLIDPEK-KDKERAEREYKITIRIAGRTDLYHL 321

Query: 146 VEFMRTGVNR--PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLW 203
            +F+  G  R  PQ  IQ LDVVLRE  S + N+V V RS+FS    +R  D+G+GL  W
Sbjct: 322 QQFL-LGRQRDMPQETIQVLDVVLRE--SPSWNYVTVSRSFFSTQFGHR-GDIGEGLECW 377

Query: 204 NGFYQSAGIGWRPY-----LNVDVAHKGFPEEKSVIKVIDEIC--RGLPPELSDYD 252
            G+YQS     RP      LN+D++   F +  +VI+ ++E    R     LSD D
Sbjct: 378 RGYYQS----LRPTQMGLSLNIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDRD 429

Essential for the progression of premeiotic mitosis and meiosis during sporogenesis. Regulates the cell division of premeiotic germ cells, the proper modification of meiotic chromosomes, and the faithful progression of meiosis, probably via small RNA-mediated gene silencing. May be involved in histone H3 'Lys-9' demethylation in the pericentromeric region.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z4F1|AGO14_ORYSJ Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 121/222 (54%), Gaps = 26/222 (11%)

Query: 36  GTLGRRTQVDTNHFAITFKNPNLVIFHYDVAID-PDKPVRYMRPVMQKVAREYFPNSPCG 94
           GT+G R  V  NHF +   + N +I+ YDV++  P K  R  R VM ++AR +  +   G
Sbjct: 199 GTVGERIVVRANHFLVRVSD-NDMIYLYDVSLSPPPKTRRINRVVMSELARLHRESHLGG 257

Query: 95  ----YDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMR 150
               YDG K L++ G LPF + M+  + +  E  +++ EYKV I++A +     + EF+ 
Sbjct: 258 ISFAYDGSKALYTAGKLPFDS-MDFKIKLGKE--LREIEYKVTIRRAGQADLHHLHEFI- 313

Query: 151 TGVNR--PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQ 208
            G  R   Q  IQALDVVLRE  SL  N+V V RS++S     +  D+GDGL  W G+YQ
Sbjct: 314 AGRQRDSQQQTIQALDVVLRESPSL--NYVIVSRSFYSTMFGRQ--DIGDGLECWKGYYQ 369

Query: 209 SAGIGWRPY-----LNVDVAHKGFPEEKSVIKVIDEICRGLP 245
           S     RP      LN+D++   F +  SV++ +   C G P
Sbjct: 370 S----LRPTQMGLSLNIDISSTPFFKPISVVEYVKN-CLGTP 406

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1

 Score =  104 bits (259), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 92/266 (34%), Positives = 132/266 (49%), Gaps = 39/266 (14%)

Query: 14  SAASGAGSKGLYQIPRRSNK-------DGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVA 66
           S   GA S+ +  IP  S           G  G+R  V  NHF      P+  + HYDV 
Sbjct: 157 SVEQGAPSQAIQPIPSSSKAFKFPMRPGKGQSGKRCIVKANHFFAEL--PDKDLHHYDVT 214

Query: 67  IDPDKPVRYM-RPVMQKVAREYFPNSPCG-----YDGKKNLFSKGTLPFGTAMNCTVSIF 120
           I P+   R + R VM+++   Y  +S  G     YDG+K+L++ G LPF +     +++ 
Sbjct: 215 ITPEVTSRGVNRAVMKQLVDNYR-DSHLGSRLPAYDGRKSLYTAGPLPFNSK-EFRINLL 272

Query: 121 DEE-----RMKDKEYKVEIKKAQEISFASIVEFMR-TGVNRPQIAIQALDVVLRE-PCSL 173
           DEE     + +++E+KV IK         +  F+     + PQ A+Q LD+VLRE P S 
Sbjct: 273 DEEVGAGGQRREREFKVVIKLVARADLHHLGMFLEGKQSDAPQEALQVLDIVLRELPTS- 331

Query: 174 NANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGWRPY-----LNVDVAHKGFP 228
              ++ VGRS++SP D  +   LGDGL  W GFYQS     RP      LN+D++   F 
Sbjct: 332 --RYIPVGRSFYSP-DIGKKQSLGDGLESWRGFYQSI----RPTQMGLSLNIDMSSTAFI 384

Query: 229 EEKSVIK-VIDEICRGLPPE-LSDYD 252
           E   VI+ V D + R +    LSD D
Sbjct: 385 EANPVIQFVCDLLNRDISSRPLSDAD 410

Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Requires DRB1 for directional loading of the small RNA duplex (guide stand and passenger strand) onto RISC for passenger strand degradation. Unlike animal RISC that associates in high molecular weight complex, Arabidopsis RISC is probably composed only of the AGO1 protein and associated RNA without any other proteins. Associates mainly with miRNAs of 21 nucleotide in length and preferentially recruits small RNAs with a 5' terminal uridine. Associates with 22 nucleotide miRNAs to trigger RDR6-dependent secondary siRNAs biogenesis. This pathway amplifies silencing by using the target RNA as substrate to generate secondary siRNAs. Binds to miR168 which targets its own mRNA for repression, establishing a homeostatic regulatory loop. Involved in antiviral RNA silencing by contributing to viral RNA clearance. Is capable of targeting viral RNAs with more compact structures than AGO7 which favors less structured RNA targets. May not associate with 24 nucleotide siRNAs involved in chromatin silencing. Essential for multiple processes in development. Essential for proper development of leaves and floral organs, and formation of axillary meristems. Like AGO10, required for stem cell function and organ polarity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8CJG1|AGO1_MOUSE Protein argonaute-1 OS=Mus musculus GN=Eif2c1 PE=1 SV=2

 Score =  103 bits (258), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 19/228 (8%)

Query: 22  KGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVM 80
           + ++Q PRR     GT+G+  ++  N+F +    P + ++HY+V I PDK P R  R V+
Sbjct: 18  QQVFQAPRRPGI--GTVGKPIKLLANYFEVDI--PKIDVYHYEVDIKPDKCPRRVNREVV 73

Query: 81  QKVAREYFPN-----SPCGYDGKKNLFSKGTLPFGTA-MNCTVSIFDEERMKDKEYKVEI 134
           + + + + P       P  YDGKKN+++   LP G   ++  V+I  E   KD+ +KV I
Sbjct: 74  EYMVQHFKPQIFGDRKPV-YDGKKNIYTVTALPIGNERVDFEVTIPGEG--KDRIFKVSI 130

Query: 135 KKAQEISFASIVEFMRTG-VNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRL 193
           K    +S+  + E + +G +  P  ++QALDV +R   S+   +  VGRS+FSPP+    
Sbjct: 131 KWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASM--RYTPVGRSFFSPPE-GYY 187

Query: 194 VDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
             LG G  +W GF+QS     W+  LN+DV+   F + + VI+ + E+
Sbjct: 188 HPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEV 235

Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs. May also be required for transcriptional gene silencing (TGS) of promoter regions which are complementary to bound short antigene RNAs (agRNAs).

Mus musculus (taxid: 10090)

>sp|Q9UL18|AGO1_HUMAN Protein argonaute-1 OS=Homo sapiens GN=EIF2C1 PE=1 SV=3

 Score =  103 bits (258), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 19/228 (8%)

Query: 22  KGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVM 80
           + ++Q PRR     GT+G+  ++  N+F +    P + ++HY+V I PDK P R  R V+
Sbjct: 18  QQVFQAPRRPGI--GTVGKPIKLLANYFEVDI--PKIDVYHYEVDIKPDKCPRRVNREVV 73

Query: 81  QKVAREYFPN-----SPCGYDGKKNLFSKGTLPFGTA-MNCTVSIFDEERMKDKEYKVEI 134
           + + + + P       P  YDGKKN+++   LP G   ++  V+I  E   KD+ +KV I
Sbjct: 74  EYMVQHFKPQIFGDRKPV-YDGKKNIYTVTALPIGNERVDFEVTIPGEG--KDRIFKVSI 130

Query: 135 KKAQEISFASIVEFMRTG-VNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRL 193
           K    +S+  + E + +G +  P  ++QALDV +R   S+   +  VGRS+FSPP+    
Sbjct: 131 KWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASM--RYTPVGRSFFSPPE-GYY 187

Query: 194 VDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
             LG G  +W GF+QS     W+  LN+DV+   F + + VI+ + E+
Sbjct: 188 HPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEV 235

Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs. Also required for transcriptional gene silencing (TGS) of promoter regions which are complementary to bound short antigene RNAs (agRNAs).

Homo sapiens (taxid: 9606)

>sp|Q8CJF8|AGO4_MOUSE Protein argonaute-4 OS=Mus musculus GN=Eif2c4 PE=2 SV=2

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 17/225 (7%)

Query: 24  LYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQK 82
           L+Q PRR     GT+G+  ++  NHF +    P + ++HYDV I P+K P R  R V+  
Sbjct: 12  LFQPPRRPGL--GTVGKPIRLLANHFQVQI--PKIDVYHYDVDIKPEKRPRRVNREVVDT 67

Query: 83  VAREY----FPNSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKKA 137
           + R +    F +   GYDGK+N+++   LP G   ++  V++  E   KD+ +KV ++  
Sbjct: 68  MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRIDMEVTLPGEG--KDQTFKVSVQWV 125

Query: 138 QEISFASIVEFMRTGVNR-PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDL 196
             +S   ++E +   +N  P  ++QALDV+ R   S+   +  VGRS+FSPP+      L
Sbjct: 126 SVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSM--RYTPVGRSFFSPPE-GYYHPL 182

Query: 197 GDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
           G G  +W GF+QS     W   LN+DV+   F   + +I+ + E+
Sbjct: 183 GGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEV 227

Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs.

Mus musculus (taxid: 10090)

>sp|Q9HCK5|AGO4_HUMAN Protein argonaute-4 OS=Homo sapiens GN=EIF2C4 PE=1 SV=2

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 17/225 (7%)

Query: 24  LYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQK 82
           L+Q PRR     GT+G+  ++  NHF +    P + ++HYDV I P+K P R  R V+  
Sbjct: 12  LFQPPRRPGL--GTVGKPIRLLANHFQVQI--PKIDVYHYDVDIKPEKRPRRVNREVVDT 67

Query: 83  VAREY----FPNSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKKA 137
           + R +    F +   GYDGK+N+++   LP G   ++  V++  E   KD+ +KV ++  
Sbjct: 68  MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEG--KDQTFKVSVQWV 125

Query: 138 QEISFASIVEFMRTGVNR-PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDL 196
             +S   ++E +   +N  P  ++QALDV+ R   S+   +  VGRS+FSPP+      L
Sbjct: 126 SVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSM--RYTPVGRSFFSPPE-GYYHPL 182

Query: 197 GDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
           G G  +W GF+QS     W   LN+DV+   F   + +I+ + E+
Sbjct: 183 GGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEV 227

Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs. Also required for RNA-directed transcription and replication of the human hapatitis delta virus (HDV).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
444841775	869	agonaute 2, partial [Sogatella furcifera	0.829	0.240	0.447	3e-51
444841773	918	agonaute 2 [Nilaparvata lugens]	0.861	0.236	0.432	6e-51
383863233	1075	PREDICTED: protein argonaute-2-like [Meg	0.876	0.205	0.419	1e-42
156546430	1060	PREDICTED: protein argonaute-2-like [Nas	0.837	0.199	0.422	3e-40
340720199	951	PREDICTED: LOW QUALITY PROTEIN: protein	0.845	0.223	0.399	9e-39
345497913	956	PREDICTED: protein argonaute-2-like [Nas	0.857	0.225	0.410	1e-37
167234415	879	Argonaute-2b [Tribolium castaneum]	0.789	0.226	0.422	2e-37
350420134	1015	PREDICTED: protein argonaute-3-like [Bom	0.841	0.208	0.391	3e-37
270008178	904	argonaute-2b [Tribolium castaneum]	0.789	0.220	0.422	3e-37
328786684	1186	PREDICTED: protein argonaute-2 [Apis mel	0.896	0.190	0.378	1e-35

>gi|444841775|gb|AGE12620.1| agonaute 2, partial [Sogatella furcifera]

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 148/221 (66%), Gaps = 12/221 (5%)

Query: 25  YQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVA 84
           ++IP R  K  GT GR+ +++ NHF +TFK  N +  HYDV+  PDKP R  R +M+   
Sbjct: 72  WKIPER--KKNGTKGRKIELELNHFELTFKKQNFIAIHYDVSFKPDKPRRMFRQIMEAFR 129

Query: 85  REYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFAS 144
           R+ +PN+   +DG+KNL+S   LPFG  +  TV +F++ER  D+EY+V +K A  +  + 
Sbjct: 130 RKKYPNNYPAFDGRKNLYSAKELPFGMEVTDTVKVFNDERYIDQEYEVTVKFASRVDMSQ 189

Query: 145 IVEFMR---TGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLH 201
           + +++         PQ A+QA+D+VLR P +L  +FV VGRS+FS P+   +++LG+GL 
Sbjct: 190 LSQYLSGKGQSYQTPQEALQAIDIVLRNPAAL--SFVGVGRSFFSKPES--IIELGEGLE 245

Query: 202 LWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICR 242
           LW GFYQSA +GW+P+LNVDVAHKGFP  +   +++D +CR
Sbjct: 246 LWYGFYQSAILGWKPFLNVDVAHKGFPMGE---RLLDTLCR 283

Source: Sogatella furcifera

Species: Sogatella furcifera

Genus: Sogatella

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|444841773|gb|AGE12619.1| agonaute 2 [Nilaparvata lugens]

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 99/229 (43%), Positives = 151/229 (65%), Gaps = 12/229 (5%)

Query: 25  YQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVA 84
           + +P R  K  GT GRR +++ NHF +TFK  N    HYDV I P+KP R  R +M+   
Sbjct: 98  WTLPLR--KKNGTRGRRIELELNHFELTFKKQNFCAIHYDVTIKPEKPRRMYRVIMEAFR 155

Query: 85  REYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFAS 144
           R+ +PN+   +DG+KNL+S   LPFG  +  TV +F++ER  D+EY+V +K A ++  + 
Sbjct: 156 RKIYPNNYPAFDGRKNLYSAKELPFGMEVTSTVKVFNDERYIDQEYEVTVKFASKVDMSQ 215

Query: 145 IVEFMR---TGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLH 201
           + +++         PQ A+QA+D+VLR P +L   FV VGRS+F+ P+  +++DLG+GL 
Sbjct: 216 LSQYLSGRGQSYQTPQEALQAIDIVLRNPAAL--TFVGVGRSFFTKPE--QIIDLGEGLE 271

Query: 202 LWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICRGLPPELSD 250
           LW GFYQSA +GW+P+LNVDVAHKGFP  + +++    +CR +  +++D
Sbjct: 272 LWYGFYQSAILGWKPFLNVDVAHKGFPMGEQLLQT---LCRYMRCQVND 317

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863233|ref|XP_003707086.1| PREDICTED: protein argonaute-2-like [Megachile rotundata]

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/236 (41%), Positives = 140/236 (59%), Gaps = 15/236 (6%)

Query: 26  QIPRRSNKDGGTLGRRTQVDTNHFAITFK-NPNLVIFHYDVAIDPDKPVRYMRPVMQKVA 84
           QIP R  K GGT GR+ QV+TN F I FK N    + HYDV I PDKP   MR + ++  
Sbjct: 251 QIPHR--KTGGTQGRKIQVETNMFKIIFKSNFQTNVIHYDVVITPDKPKFLMRTIFEQYR 308

Query: 85  REYFPNSPCGYDGKKNLFSKGTLPFG-TAMNCTVSIFDEERMKDKEYKVEIKKAQEISFA 143
           +++FPN    +DGKKN +S   LPFG  ++   ++I D ER +++ +KV +KKA  +  +
Sbjct: 309 KKHFPNRYPAFDGKKNAYSANKLPFGDESIEDVITIVDPERQQERTWKVYMKKAATLDLS 368

Query: 144 ---SIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGL 200
              ++  F+     R    +QALD++ R   +    F  VGRS F  P+P R+V L  GL
Sbjct: 369 WLKNLSNFVED--EREMKCVQALDIIFRHGPAYQ--FTPVGRSLFKQPEPGRVVSLSGGL 424

Query: 201 HLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICR----GLPPELSDYD 252
            LW G +QS  IG + YLN+DVAHKGFP+++SVI ++ E+C+      PPE   Y 
Sbjct: 425 DLWVGVFQSVAIGRKAYLNIDVAHKGFPKDQSVIDLMKELCKHPRATAPPETLQYQ 480

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546430|ref|XP_001607164.1| PREDICTED: protein argonaute-2-like [Nasonia vitripennis]

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/220 (42%), Positives = 135/220 (61%), Gaps = 9/220 (4%)

Query: 26  QIPRRSN-KDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVA 84
           QIP+R N    GT GR   V TN  AI  +  N  + HYDV I P+ P   MRPV  +  
Sbjct: 212 QIPKRKNPMKAGTKGRPITVKTNMMAINVRQMNSNVVHYDVDIVPNTPKYLMRPVFLEAK 271

Query: 85  REYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFAS 144
           ++ FPN    +DGKKN FS G LP        V +++E+  ++K+Y V +K A  I   S
Sbjct: 272 KKLFPNRNPAFDGKKNAFSAGDLPIKDPSTAEVVVYNEDG-REKKYTVTMKIANRIDL-S 329

Query: 145 IVEFMRTGVN---RPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLH 201
            ++ ++ G+    R QI++QALDV++R   +L +    VGRS+F+PP   +++ LG G+ 
Sbjct: 330 WLKTVKPGLQETERNQISLQALDVIMRNAPALTS--TPVGRSFFTPPK-GQVMSLGGGMD 386

Query: 202 LWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEIC 241
           LW G +QSA +GW+PYLN+DVAHKGFP+ +SV+ ++  IC
Sbjct: 387 LWVGLFQSAVLGWKPYLNIDVAHKGFPKPQSVLDLMKTIC 426

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720199|ref|XP_003398529.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute-2-like [Bombus terrestris]

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/223 (39%), Positives = 141/223 (63%), Gaps = 10/223 (4%)

Query: 26  QIPRRSNKDGGTLGRRTQVDTNHFAITF-KNPNLVIFHYDVAIDPDKPVRYMRPVMQKVA 84
           Q+P++++   GT+GR+  V+TN F + F KN    + HYDV I P+KP  ++R V ++  
Sbjct: 124 QMPQKTS--VGTVGRKITVETNMFRLIFPKNFETNVIHYDVVITPEKPKCFLRSVFEEFR 181

Query: 85  REYFPNSPCGYDGKKNLFSKGTLPFG-TAMNCTVSIFDEERMKDKEYKVEIKKAQ--EIS 141
           +   P     +DG+KN +S   LPFG  +   T+++FD E +K++ +K+ + K    ++S
Sbjct: 182 KIQCPKRYPAFDGRKNAYSANDLPFGDQSKEETITLFDNELLKERTFKIYLXKVAFLDLS 241

Query: 142 FASIVEFMRTGVNRPQIAIQALDVVLRE-PCSLNANFVRVGRSYFSPPDPNRLVDLGDGL 200
           +   +++     +  Q  IQALD++LR  P S    +V VGRS F  P+P R++ L +GL
Sbjct: 242 WIKNLKYDAFESDTKQQCIQALDIILRHGPAS---RYVSVGRSLFQAPEPGRVISLTNGL 298

Query: 201 HLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICRG 243
           +LW G +QSA +G R YLNVDVAHKGFP+E+SVI ++ E+C+ 
Sbjct: 299 NLWFGVFQSAIVGSRAYLNVDVAHKGFPKEQSVIDLMKELCQN 341

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497913|ref|XP_001607156.2| PREDICTED: protein argonaute-2-like [Nasonia vitripennis]

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/224 (41%), Positives = 129/224 (57%), Gaps = 8/224 (3%)

Query: 22  KGLYQIPRRSN-KDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVM 80
           K + QIP+R +    GT GR   V TN  AI  K  N  + HYDV I PD P   MRPV 
Sbjct: 91  KEVDQIPKRKDPTKAGTTGRPITVKTNMMAINVKQMNPNVVHYDVKIVPDTPKYLMRPVF 150

Query: 81  QKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEI 140
            +V +  FP     +DG+KN FS G LP        V +++E+  ++K+YKV IK    I
Sbjct: 151 LEVKKTLFPERNPAFDGRKNAFSAGELPIEDPSTAEVVVYNEDG-QEKKYKVTIKIVNRI 209

Query: 141 SFASIVEFMRTGVNRP---QIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLG 197
             + +  F     + P   QI+IQALDV+LR   +   + +R   S+F+PP   +++ LG
Sbjct: 210 DLSWLKAFEPGTQDLPRNQQISIQALDVILRNAPAALMSCIR--SSFFTPPK-GQVMSLG 266

Query: 198 DGLHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEIC 241
            G+ LW G +QSA +GW+PY NVDVAHK FP+ +SV+ ++  IC
Sbjct: 267 GGMDLWVGLFQSAVLGWKPYFNVDVAHKSFPKPQSVLDLMKTIC 310

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|167234415|ref|NP_001107828.1| Argonaute-2b [Tribolium castaneum]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 126/206 (61%), Gaps = 7/206 (3%)

Query: 36  GTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGY 95
           GT GRR Q+++NH ++         +HYDVAI PD P   +R VM    R+++P +   +
Sbjct: 70  GTKGRRIQIESNHLSLNLGKLTEA-YHYDVAITPDTPKCLLRDVMNLFGRKHYPQNHPAF 128

Query: 96  DGKKNLFSKGTLPF-GTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVN 154
           DG+KNL+S   LPF     + T+ +  E R   KE+KVE+K A+ +    + + MRT   
Sbjct: 129 DGRKNLYSPKKLPFPNDTKSDTIEVEGENR--KKEFKVEVKLARTVDLTPLHDIMRT-TQ 185

Query: 155 RPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGW 214
            PQ A+Q LD+VLR   S NA  +  GR +F+PP   +++ LGDG+ L+ GFYQSA  GW
Sbjct: 186 SPQDALQCLDIVLRNAPS-NACII-AGRCFFTPPRDGQIIPLGDGMELYYGFYQSAIRGW 243

Query: 215 RPYLNVDVAHKGFPEEKSVIKVIDEI 240
           +  LNVDVAHK FP+  +V+ ++ EI
Sbjct: 244 KALLNVDVAHKAFPKASNVLDIVCEI 269

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420134|ref|XP_003492410.1| PREDICTED: protein argonaute-3-like [Bombus impatiens]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 140/222 (63%), Gaps = 10/222 (4%)

Query: 26  QIPRRSNKDGGTLGRRTQVDTNHFAITF-KNPNLVIFHYDVAIDPDKPVRYMRPVMQKVA 84
           Q+P++++   GT+G++  V+TN F + F +N    + HYDV I PDKP  ++R V ++  
Sbjct: 188 QMPQKTSV--GTMGKKITVETNMFRLIFPRNFETNVIHYDVVITPDKPKCFLRSVFEEFR 245

Query: 85  REYFPNSPCGYDGKKNLFSKGTLPFG-TAMNCTVSIFDEERMKDKEYKVEIKKAQ--EIS 141
           +   P     +DG++N +S   LPFG  +   ++++FD E  K++ +K+ +KK    ++S
Sbjct: 246 KIQCPKRYPAFDGRRNAYSANDLPFGDQSKEESITLFDNEFQKERTFKIYLKKVAFLDLS 305

Query: 142 FASIVEFMRTGVNRPQIAIQALDVVLRE-PCSLNANFVRVGRSYFSPPDPNRLVDLGDGL 200
           +   +++     +  Q  IQALD++LR  P S    +V VGRS F  P+  R+V L +GL
Sbjct: 306 WIKNLKYDAFESDTKQQCIQALDIILRHGPAS---QYVTVGRSLFQAPEQGRVVSLTNGL 362

Query: 201 HLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEICR 242
           +LW G +QSA +G R YLNVDVAHKGFP+E+SVI ++ E+C+
Sbjct: 363 NLWFGVFQSAIVGSRAYLNVDVAHKGFPKEQSVIDLMKELCQ 404

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008178|gb|EFA04626.1| argonaute-2b [Tribolium castaneum]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 126/206 (61%), Gaps = 7/206 (3%)

Query: 36  GTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGY 95
           GT GRR Q+++NH ++         +HYDVAI PD P   +R VM    R+++P +   +
Sbjct: 95  GTKGRRIQIESNHLSLNLGKLTEA-YHYDVAITPDTPKCLLRDVMNLFGRKHYPQNHPAF 153

Query: 96  DGKKNLFSKGTLPF-GTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVN 154
           DG+KNL+S   LPF     + T+ +  E R   KE+KVE+K A+ +    + + MRT   
Sbjct: 154 DGRKNLYSPKKLPFPNDTKSDTIEVEGENR--KKEFKVEVKLARTVDLTPLHDIMRT-TQ 210

Query: 155 RPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGW 214
            PQ A+Q LD+VLR   S NA  +  GR +F+PP   +++ LGDG+ L+ GFYQSA  GW
Sbjct: 211 SPQDALQCLDIVLRNAPS-NACII-AGRCFFTPPRDGQIIPLGDGMELYYGFYQSAIRGW 268

Query: 215 RPYLNVDVAHKGFPEEKSVIKVIDEI 240
           +  LNVDVAHK FP+  +V+ ++ EI
Sbjct: 269 KALLNVDVAHKAFPKASNVLDIVCEI 294

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786684|ref|XP_395048.4| PREDICTED: protein argonaute-2 [Apis mellifera]

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/235 (37%), Positives = 139/235 (59%), Gaps = 9/235 (3%)

Query: 24  LYQIPRRSNKDGGTLGRRTQVDTNHFAITF-KNPNLVIFHYDVAIDPDKPVRYMRPVMQK 82
           L QIP+R+N+    + R   V+TN   + F +N    I HYDV I PDKP   +R V ++
Sbjct: 363 LDQIPKRTNQIN-KIDRNIIVETNMLKLIFTQNFQTNIIHYDVIITPDKPKFLLRTVFEE 421

Query: 83  VAREYFPNSPCGYDGKKNLFSKGTLPFG-TAMNCTVSIFDEERMKDKEYKVEIKKAQ--E 139
             ++  P     +DG+KN +S   LPFG  +    +++FD    K++ +K+ + K    +
Sbjct: 422 FRKKQCPKRYPAFDGRKNAYSAKLLPFGDKSKEEEINVFDVNTRKERNFKIYLNKVACLD 481

Query: 140 ISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDG 199
           +S+ + ++       R Q  IQALD++LR   +    +  VGRS F PP+P R+V L +G
Sbjct: 482 LSWLTNLKCDMMDSERNQKCIQALDIILRHGPAYQ--YTVVGRSLFQPPEPGRIVSLSNG 539

Query: 200 LHLWNGFYQSAGIGWRPYLNVDVAHKGFPEEKSVIKVIDEIC--RGLPPELSDYD 252
           L LW G +QS  IG +PYLN+DVAHKGFP+ +SVI+++ E+C  + L P+  +Y+
Sbjct: 540 LDLWVGVFQSVVIGSKPYLNIDVAHKGFPKSQSVIELMKELCNVQDLTPKNIEYN 594

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
FB|FBgn0087035	1214	AGO2 "Argonaute 2" [Drosophila	0.789	0.163	0.330	6.6e-26
ZFIN|ZDB-GENE-030131-5357	874	ago4 "argonaute RISC catalytic	0.825	0.237	0.333	1.2e-24
UNIPROTKB|Q4KLV6	884	eif2c4 "Protein argonaute-4" [	0.821	0.234	0.349	1.6e-24
UNIPROTKB|F1MXK6	850	EIF2C4 "Uncharacterized protei	0.825	0.244	0.333	1.9e-24
UNIPROTKB|Q9HCK5	861	EIF2C4 "Protein argonaute-4" [	0.825	0.241	0.333	1.9e-24
UNIPROTKB|F1SV64	861	EIF2C4 "Uncharacterized protei	0.825	0.241	0.333	1.9e-24
MGI|MGI:1924100	861	Ago4 "argonaute RISC catalytic	0.825	0.241	0.333	1.9e-24
RGD|1304583	798	Ago4 "argonaute RISC catalytic	0.825	0.260	0.328	3.5e-24
UNIPROTKB|F1LUQ5	860	Eif2c4 "Protein Eif2c4" [Rattu	0.825	0.241	0.328	4e-24
WB|WBGene00000105	1023	alg-1 [Caenorhabditis elegans	0.634	0.156	0.352	4.9e-24

FB|FBgn0087035 AGO2 "Argonaute 2" [Drosophila melanogaster (taxid:7227)]

 Score = 306 (112.8 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 68/206 (33%), Positives = 110/206 (53%)

Query:    36 GTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGY 95
             GT+G+  QV  N+  +       V +HYDV I P++P ++ R   ++   +    +   Y
Sbjct:   408 GTIGKPGQVGINYLDLDLSKMPSVAYHYDVKIMPERPKKFYRQAFEQFRVDQLGGAVLAY 467

Query:    96 DGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQE--ISFASIVEFMRTGV 153
             DGK + +S   LP  +  N  V++ D    +   Y +EIK+  +  I   S+  +M   +
Sbjct:   468 DGKASCYSVDKLPLNS-QNPEVTVTDRNG-RTLRYTIEIKETGDSTIDLKSLTTYMNDRI 525

Query:   154 -NRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGI 212
              ++P  A+Q ++VVL  PC   A  +RVGRS+F   DPN   +L DG     G YQ+  +
Sbjct:   526 FDKPMRAMQCVEVVLASPCHNKA--IRVGRSFFKMSDPNNRHELDDGYEALVGLYQAFML 583

Query:   213 GWRPYLNVDVAHKGFPEEKSVIKVID 238
             G RP+LNVD++HK FP    +I+ ++
Sbjct:   584 GDRPFLNVDISHKSFPISMPMIEYLE 609

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0030422 "production of siRNA involved in RNA interference" evidence=IMP;IDA

GO:0016442 "RNA-induced silencing complex" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=TAS

GO:0016246 "RNA interference" evidence=IDA;NAS;IMP;TAS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0035197 "siRNA binding" evidence=IDA

GO:0035087 "siRNA loading onto RISC involved in RNA interference" evidence=IDA;IMP

GO:0035190 "syncytial nuclear migration" evidence=IMP

GO:0007349 "cellularization" evidence=IMP

GO:0007279 "pole cell formation" evidence=IMP

GO:0004521 "endoribonuclease activity" evidence=IDA

GO:0035195 "gene silencing by miRNA" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0033227 "dsRNA transport" evidence=IMP

GO:0007367 "segment polarity determination" evidence=IGI

GO:0070578 "RISC-loading complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0045071 "negative regulation of viral genome replication" evidence=IMP

GO:0070868 "heterochromatin organization involved in chromatin silencing" evidence=IMP

ZFIN|ZDB-GENE-030131-5357 ago4 "argonaute RISC catalytic component 4" [Danio rerio (taxid:7955)]

 Score = 292 (107.8 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 75/225 (33%), Positives = 123/225 (54%)

Query:    24 LYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQK 82
             L+Q PRR     GT+G+  ++  NHF +    P + ++HYD+ I P+K P R  R V+  
Sbjct:    14 LFQPPRRPGL--GTVGKPIRLLANHFQVQI--PKIDVYHYDIDIKPEKRPRRVNREVVDT 69

Query:    83 VAREY----FPNSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKKA 137
             + R +    F +   GYDGK+N+++   LP G   ++  V++  E   KD+ +KV ++  
Sbjct:    70 MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEG--KDQTFKVSLQWV 127

Query:   138 QEISFASIVEFMRTGVNR-PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDL 196
               +S   ++E +   +N  P+ ++QALDV+ R   S+   +  VGRS+FSPP+      L
Sbjct:   128 SVVSLQMLLEALSGHLNEVPEDSVQALDVITRHLPSMR--YTPVGRSFFSPPE-GYYHPL 184

Query:   197 GDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
             G G  +W GF+QS     W   LN+DV+   F   + VI+ + E+
Sbjct:   185 GGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEV 229

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q4KLV6 eif2c4 "Protein argonaute-4" [Xenopus laevis (taxid:8355)]

 Score = 291 (107.5 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 79/226 (34%), Positives = 123/226 (54%)

Query:    24 LYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQK 82
             L+Q PRR     GTLG+  ++  NHF +    P + ++HYDV I P+K P R  R V+  
Sbjct:    35 LFQPPRRPGL--GTLGKPIRLLANHFQVQI--PKIDVYHYDVDIKPEKRPRRVNREVVDT 90

Query:    83 VAREY-FP----NSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKK 136
             + R +  P    N P GYDGK+N+++   LP G   ++  V++  E   KD+ +KV I+ 
Sbjct:    91 MVRHFKMPIFGDNQP-GYDGKRNMYTAHPLPIGRDRVDLEVTLPGEG--KDQTFKVTIQW 147

Query:   137 AQEISFASIVEFMRTGVNR-PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVD 195
                +S   ++E +   ++  P  ++QALDV+ R   S+   +  VGRS+FSPP+      
Sbjct:   148 VSVVSLQLLLEALSGHLSEVPDDSVQALDVITRHLPSMR--YTPVGRSFFSPPE-GYYHP 204

Query:   196 LGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
             LG G  +W GF+QS     W   LN+DV+   F   + VI+ + E+
Sbjct:   205 LGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEV 250

GO:0006402 "mRNA catabolic process" evidence=ISS

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISS

UNIPROTKB|F1MXK6 EIF2C4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 290 (107.1 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 75/225 (33%), Positives = 122/225 (54%)

Query:    24 LYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQK 82
             L+Q PRR     GT+G+  ++  NHF +    P + ++HYDV I P+K P R  R V+  
Sbjct:    11 LFQPPRRPGL--GTVGKPIRLLANHFQVQI--PKIDVYHYDVDIKPEKRPRRVNREVVDT 66

Query:    83 VAREY----FPNSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKKA 137
             + R +    F +   GYDGK+N+++   LP G   ++  V++  E   KD+ +KV ++  
Sbjct:    67 MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEG--KDQTFKVSVQWV 124

Query:   138 QEISFASIVEFMRTGVNR-PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDL 196
               +S   ++E +   +N  P  ++QALDV+ R   S+   +  VGRS+FSPP+      L
Sbjct:   125 SVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMR--YTPVGRSFFSPPE-GYYHPL 181

Query:   197 GDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
             G G  +W GF+QS     W   LN+DV+   F   + +I+ + E+
Sbjct:   182 GGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEV 226

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

UNIPROTKB|Q9HCK5 EIF2C4 "Protein argonaute-4" [Homo sapiens (taxid:9606)]

 Score = 290 (107.1 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 75/225 (33%), Positives = 122/225 (54%)

Query:    24 LYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQK 82
             L+Q PRR     GT+G+  ++  NHF +    P + ++HYDV I P+K P R  R V+  
Sbjct:    12 LFQPPRRPGL--GTVGKPIRLLANHFQVQI--PKIDVYHYDVDIKPEKRPRRVNREVVDT 67

Query:    83 VAREY----FPNSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKKA 137
             + R +    F +   GYDGK+N+++   LP G   ++  V++  E   KD+ +KV ++  
Sbjct:    68 MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEG--KDQTFKVSVQWV 125

Query:   138 QEISFASIVEFMRTGVNR-PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDL 196
               +S   ++E +   +N  P  ++QALDV+ R   S+   +  VGRS+FSPP+      L
Sbjct:   126 SVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMR--YTPVGRSFFSPPE-GYYHPL 182

Query:   197 GDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
             G G  +W GF+QS     W   LN+DV+   F   + +I+ + E+
Sbjct:   183 GGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEV 227

GO:0003723 "RNA binding" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=IDA

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SV64 EIF2C4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 290 (107.1 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 75/225 (33%), Positives = 122/225 (54%)

Query:    24 LYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQK 82
             L+Q PRR     GT+G+  ++  NHF +    P + ++HYDV I P+K P R  R V+  
Sbjct:    12 LFQPPRRPGL--GTVGKPIRLLANHFQVQI--PKIDVYHYDVDIKPEKRPRRVNREVVDT 67

Query:    83 VAREY----FPNSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKKA 137
             + R +    F +   GYDGK+N+++   LP G   ++  V++  E   KD+ +KV ++  
Sbjct:    68 MVRHFKIQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEG--KDQTFKVSVQWV 125

Query:   138 QEISFASIVEFMRTGVNR-PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDL 196
               +S   ++E +   +N  P  ++QALDV+ R   S+   +  VGRS+FSPP+      L
Sbjct:   126 SVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMR--YTPVGRSFFSPPE-GYYHPL 182

Query:   197 GDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
             G G  +W GF+QS     W   LN+DV+   F   + +I+ + E+
Sbjct:   183 GGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEV 227

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

MGI|MGI:1924100 Ago4 "argonaute RISC catalytic subunit 4" [Mus musculus (taxid:10090)]

 Score = 290 (107.1 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 75/225 (33%), Positives = 122/225 (54%)

Query:    24 LYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQK 82
             L+Q PRR     GT+G+  ++  NHF +    P + ++HYDV I P+K P R  R V+  
Sbjct:    12 LFQPPRRPGL--GTVGKPIRLLANHFQVQI--PKIDVYHYDVDIKPEKRPRRVNREVVDT 67

Query:    83 VAREY----FPNSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKKA 137
             + R +    F +   GYDGK+N+++   LP G   ++  V++  E   KD+ +KV ++  
Sbjct:    68 MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRIDMEVTLPGEG--KDQTFKVSVQWV 125

Query:   138 QEISFASIVEFMRTGVNR-PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDL 196
               +S   ++E +   +N  P  ++QALDV+ R   S+   +  VGRS+FSPP+      L
Sbjct:   126 SVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMR--YTPVGRSFFSPPE-GYYHPL 182

Query:   197 GDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
             G G  +W GF+QS     W   LN+DV+   F   + +I+ + E+
Sbjct:   183 GGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEV 227

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0006417 "regulation of translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0031047 "gene silencing by RNA" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IDA

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISO

RGD|1304583 Ago4 "argonaute RISC catalytic component 4" [Rattus norvegicus (taxid:10116)]

 Score = 287 (106.1 bits), Expect = 3.5e-24, P = 3.5e-24
 Identities = 74/225 (32%), Positives = 123/225 (54%)

Query:    24 LYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQK 82
             L+Q PRR     GT+G+  ++  NHF +    P + ++HYDV I P+K P R  R V+  
Sbjct:    11 LFQPPRRPGL--GTVGKPIRLLANHFQVQI--PKIDVYHYDVDIKPEKRPRRVNREVVDT 66

Query:    83 VAREY----FPNSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKKA 137
             + R +    F +   GYDGK+N+++   LP G   ++  V++  E   KD+ +KV ++  
Sbjct:    67 MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEG--KDQTFKVSVQWV 124

Query:   138 QEISFASIVEFMRTGVNR-PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDL 196
               +S   ++E +   ++  P  ++QALDV+ R   S+   +  VGRS+FSPP+      L
Sbjct:   125 SVVSLQLLLEALAGHLSEVPDDSVQALDVITRHLPSMR--YTPVGRSFFSPPE-GYYHPL 181

Query:   197 GDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
             G G  +W GF+QS     W+  LN+DV+   F   + +I+ + E+
Sbjct:   182 GGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYRAQPIIEFMCEV 226

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0035068 "micro-ribonucleoprotein complex" evidence=ISO

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISO

UNIPROTKB|F1LUQ5 Eif2c4 "Protein Eif2c4" [Rattus norvegicus (taxid:10116)]

 Score = 287 (106.1 bits), Expect = 4.0e-24, P = 4.0e-24
 Identities = 74/225 (32%), Positives = 123/225 (54%)

Query:    24 LYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQK 82
             L+Q PRR     GT+G+  ++  NHF +    P + ++HYDV I P+K P R  R V+  
Sbjct:    11 LFQPPRRPGL--GTVGKPIRLLANHFQVQI--PKIDVYHYDVDIKPEKRPRRVNREVVDT 66

Query:    83 VAREY----FPNSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKKA 137
             + R +    F +   GYDGK+N+++   LP G   ++  V++  E   KD+ +KV ++  
Sbjct:    67 MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEG--KDQTFKVSVQWV 124

Query:   138 QEISFASIVEFMRTGVNR-PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDL 196
               +S   ++E +   ++  P  ++QALDV+ R   S+   +  VGRS+FSPP+      L
Sbjct:   125 SVVSLQLLLEALAGHLSEVPDDSVQALDVITRHLPSMR--YTPVGRSFFSPPE-GYYHPL 181

Query:   197 GDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
             G G  +W GF+QS     W+  LN+DV+   F   + +I+ + E+
Sbjct:   182 GGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYRAQPIIEFMCEV 226

GO:0003676 "nucleic acid binding" evidence=IEA

WB|WBGene00000105 alg-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 233 (87.1 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
 Identities = 61/173 (35%), Positives = 95/173 (54%)

Query:    25 YQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQ-- 81
             +Q PRR N   G  GR   +  NHFA+    P   I HY V + PDK P R  R ++   
Sbjct:   157 FQCPRRPNH--GVEGRSILLRANHFAVRI--PGGTIQHYQVDVTPDKCPRRVNREIISCL 212

Query:    82 -KVAREYFPNSPCGYDGKKNLFSKGTLPFGTA-MNCTVSIFDEERMKDKEYKVEIKKAQE 139
                  +YF N    YDGK+N++++  LP G   M+  V++  +  + ++++ V +K   +
Sbjct:   213 ISAFSKYFTNIRPVYDGKRNMYTREPLPIGRERMDFDVTLPGDSAV-ERQFSVSLKWVGQ 271

Query:   140 ISFASIVEFMRTGVNR-PQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPN 191
             +S +++ + M   V + P  A+QA+DV+LR   SL   +  VGRS+FSPP PN
Sbjct:   272 VSLSTLEDAMEGRVRQVPFEAVQAMDVILRHLPSLK--YTPVGRSFFSPPVPN 322

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI;IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IGI

GO:0040025 "vulval development" evidence=IMP

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0035198 "miRNA binding" evidence=IPI

GO:0035068 "micro-ribonucleoprotein complex" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	252
PLN03202	900	PLN03202, PLN03202, protein argonaute; Provisional	1e-17
pfam08699	52	pfam08699, DUF1785, Domain of unknown function (DU	3e-11

>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 68/237 (28%), Positives = 106/237 (44%), Gaps = 50/237 (21%)

Query: 27  IPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAI--DPDKPVR---YMRPVMQ 81
           + RR     G+ G++ Q+ TNHF ++  NP+   FHY V++  +  +PV      R V+ 
Sbjct: 34  MARRGF---GSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVID 90

Query: 82  KVAREY---FPNSPCGYDGKKNLFSKGTLPFGTAMNCTV--------------------- 117
           KV   Y          YDG+K+LF+ G LP    +  TV                     
Sbjct: 91  KVQETYSSDLAGKDFAYDGEKSLFTVGALP-QNKLEFTVVLEDVSSNRNNGNGSPVGNGS 149

Query: 118 -SIFDEERMK----DKEYKVEIKKAQEISFASIVEFMR-TGVNRPQIAIQALDVVLREPC 171
            +  D +R +     K +KVEI  A +I   +I   +R       Q A++ LD++LR+  
Sbjct: 150 PNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQH- 208

Query: 172 SLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIGWRP-----YLNVDVA 223
           +     + V +S+F   DP   VDLG G+    GF+ S    +R       LN+DV+
Sbjct: 209 AAKQGCLLVRQSFFH-NDPKNFVDLGGGVLGCRGFHSS----FRTTQGGLSLNIDVS 260

Length = 900

>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785)

 Score = 56.8 bits (138), Expect = 3e-11
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 178 VRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEE 230
           + VGRS+FS    +R  DLG GL  W GF+QS         LNVDV+   F + 
Sbjct: 1   IAVGRSFFSISFGHR--DLGGGLEAWRGFFQSVRPTQGGLSLNVDVSTTAFYKP 52

This region is found in argonaute proteins and often co-occurs with pfam02179 and pfam02171. Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PLN03202	900	protein argonaute; Provisional	100.0
KOG1042|consensus	845		99.96
KOG1041|consensus	876		99.93
PF08699	52	DUF1785: Domain of unknown function (DUF1785); Int	99.8

>PLN03202 protein argonaute; Provisional

Probab=100.00  E-value=1.3e-40  Score=333.13  Aligned_cols=211  Identities=29%  Similarity=0.440  Sum_probs=177.1

Q ss_pred             ccCCCCCCCCCCCCCCeEEEEeeeeeeeecCCCeeEEEeEEEeCCCC-----ChhhhHHHHHHHHHHhCC---CCCeEec
Q psy5196          25 YQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-----PVRYMRPVMQKVAREYFP---NSPCGYD   96 (252)
Q Consensus        25 ~~~p~R~~P~~Gt~G~~i~l~tN~f~i~~~~p~~~iy~Y~V~i~P~~-----~~~~~r~i~~~l~~~~~~---~~~~~yD   96 (252)
                      +.+|+|  ||||+.|++|+|+||||+|.+..|++.+|||+|+|+|+.     .++++++|++++.+++..   +..+|||
T Consensus        31 ~~~~~R--Pg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~D  108 (900)
T PLN03202         31 RLPMAR--RGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYD  108 (900)
T ss_pred             cccCCC--CCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHhhCCCceeec
Confidence            366779  999999999999999999997435788999999999742     256778888888765422   4478999


Q ss_pred             CCcceEecCCCCCCCCCceEEEEeeCCC----------------------------CccceEEEEEEeecccChhhHHHH
Q psy5196          97 GKKNLFSKGTLPFGTAMNCTVSIFDEER----------------------------MKDKEYKVEIKKAQEISFASIVEF  148 (252)
Q Consensus        97 G~~~lyS~~~L~~~~~~~~~~~v~~~~~----------------------------~~~~~~~v~I~~~~~i~l~~l~~~  148 (252)
                      |+++|||+.+||.+..   ++.|..+++                            ++++.|+|+|++++++++++|.+|
T Consensus       109 g~~~l~s~~~L~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~  185 (900)
T PLN03202        109 GEKSLFTVGALPQNKL---EFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA  185 (900)
T ss_pred             CccceEECccCCCCCc---eEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence            9999999999997544   555543210                            125789999999999999999999


Q ss_pred             HhcCCC-ChhHHHHHHHHHHhCCCcCCCCeeeecccccCCCCCCCcccCCCcEEEeeeeeeeeeec-CceEEEeecCccc
Q psy5196         149 MRTGVN-RPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKG  226 (252)
Q Consensus       149 l~~~~~-~~~~~iq~Lnivlr~~~~~~~~~~~vGr~fF~~~~~~~~~~l~~GlE~w~Gf~~SvR~~-~~l~LNvDvs~~~  226 (252)
                      |.+... ...++||+||+|||+.++. .+++.+||+||. +......+|+.|+|+|+|||+||||+ ++|+||||++|++
T Consensus       186 l~~~~~~~~~~~iq~lnivlr~~~~~-~~~~~~gr~ff~-~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~  263 (900)
T PLN03202        186 LRGQESENSQDALRVLDIILRQHAAK-QGCLLVRQSFFH-NDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTM  263 (900)
T ss_pred             HcCCCCCCcHHHHHHHHHHHhhhhhh-CCCceeccccCC-CCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeee
Confidence            999866 7889999999999999876 358889999998 54345567899999999999999999 9999999999999


Q ss_pred             cCCCCcHHHHHHHHhc
Q psy5196         227 FPEEKSVIKVIDEICR  242 (252)
Q Consensus       227 F~~~~~l~d~i~e~~~  242 (252)
                      ||++++|+|+|.++.+
T Consensus       264 F~~~~~l~~~l~~~~~  279 (900)
T PLN03202        264 IVQPGPVVDFLIANQN  279 (900)
T ss_pred             eecCCcHHHHHHHhcC
Confidence            9999999999998764

>KOG1042|consensus

Probab=99.96  E-value=4.7e-29  Score=233.12  Aligned_cols=183  Identities=21%  Similarity=0.392  Sum_probs=155.6

Q ss_pred             CCCCCCCeEEEEeeeeeeeecCCCeeEEEeEEEeCCC-CChhhhHHHHHHHHHHhCCCCCeEecCCcceEecCCCCCCCC
Q psy5196          34 DGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPD-KPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTA  112 (252)
Q Consensus        34 ~~Gt~G~~i~l~tN~f~i~~~~p~~~iy~Y~V~i~P~-~~~~~~r~i~~~l~~~~~~~~~~~yDG~~~lyS~~~L~~~~~  112 (252)
                      +.|+.|.+++|.||||++... |+|.||||||+|+|. +.+++++.++..+.+..  +..++|||. +||.++++..+. 
T Consensus        87 KtGssG~pv~l~tN~f~l~t~-p~w~iyqYhVef~P~ves~rlR~~~L~~h~~li--g~~~~FDG~-iLfl~~k~eq~~-  161 (845)
T KOG1042|consen   87 KTGSSGIPVKLQTNFFRLMTR-PDWSIYQYHVEFEPDVESRRLREALLYNHTDLI--GKGYAFDGT-ILFLKEKFEQKQ-  161 (845)
T ss_pred             ccCCCCceEEEEeceeeeccC-CCcEEEEEEEeeccccccHHHHHHHHHHhHhhh--ccceeecce-eehhhHHHhhhh-
Confidence            569999999999999999998 999999999999998 67788888887666555  778999995 799999997432 


Q ss_pred             CceEEEEeeCCCCccceEEEEEEeecccChhhHHHHHhcCCCChhHHHHHHHHHHhCCCcCCCCeeeecccccCCCCCCC
Q psy5196         113 MNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNR  192 (252)
Q Consensus       113 ~~~~~~v~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~~~~~~~~~~iq~Lnivlr~~~~~~~~~~~vGr~fF~~~~~~~  192 (252)
                         +..+..+  .+...++|+|++++.+...            .++++|++|+|||+.+.. +++.++||+||+ |.  +
T Consensus       162 ---tel~~ks--~~ge~i~I~ik~~~~~~~t------------~p~~iqv~NlI~RR~~k~-L~L~qigRnyyn-p~--~  220 (845)
T KOG1042|consen  162 ---TELVSKS--RDGELIKITIKLTNELPST------------DPQCIQVFNLILRRSMKG-LNLTQIGRNYYD-PR--A  220 (845)
T ss_pred             ---heeeccc--CCCceEEEEEEEeccccCC------------ChhHHHHHHHHHHHHHhh-ccHHHhhhccCC-CC--c
Confidence               2223322  2456899999999998764            468999999999999875 689999999999 75  6


Q ss_pred             cccC-CCcEEEeeeeeeeeeec-CceEEEeecCccccCCCCcHHHHHHHHhcC
Q psy5196         193 LVDL-GDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEICRG  243 (252)
Q Consensus       193 ~~~l-~~GlE~w~Gf~~SvR~~-~~l~LNvDvs~~~F~~~~~l~d~i~e~~~~  243 (252)
                      +.+| .+.+++||||-+|||.. ..++||.|++|++++ ..+|+|+|..+.+.
T Consensus       221 ~i~ip~~km~lwPGy~tSIrq~E~~illctei~hKvmR-~ETvy~~m~~~~~~  272 (845)
T KOG1042|consen  221 KIEIPEFKMSLWPGYETSIRQHENDILLCTEISHKVMR-TETVYDIMRSCQHN  272 (845)
T ss_pred             ccccccccceecCcchhHHHHhhhceeeehhhhhhHhh-hhHHHHHHHHHhhC
Confidence            7888 78999999999999999 999999999999996 68999999887654

>KOG1041|consensus

Probab=99.93  E-value=1.9e-24  Score=215.90  Aligned_cols=217  Identities=29%  Similarity=0.432  Sum_probs=170.8

Q ss_pred             ccCCCCCCCCCCCCCCeEEEEeeeeeeeecCCCee-EEEeEEEeCCCCC-hhhhH-HHHHHHHHHh--C--CCCCeEecC
Q psy5196          25 YQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLV-IFHYDVAIDPDKP-VRYMR-PVMQKVAREY--F--PNSPCGYDG   97 (252)
Q Consensus        25 ~~~p~R~~P~~Gt~G~~i~l~tN~f~i~~~~p~~~-iy~Y~V~i~P~~~-~~~~r-~i~~~l~~~~--~--~~~~~~yDG   97 (252)
                      ...+.|  |+.|+.|+++.|.+|||.+..+.|+.. +++|+|++.++.. +...+ .++..+....  +  .....+|||
T Consensus        43 ~~~~~r--p~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg  120 (876)
T KOG1041|consen   43 RFPMNR--PGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDG  120 (876)
T ss_pred             cccccC--CCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccC
Confidence            466678  999999999999999999887656665 9999999999843 44443 4444333322  2  244556999


Q ss_pred             CcceEecCCCCCCCCCceEEEEeeCCCCccceEEEEEEeecccChhhHHHHHhcCCC-ChhHHHHHHHHHHhCCCcCCCC
Q psy5196          98 KKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVN-RPQIAIQALDVVLREPCSLNAN  176 (252)
Q Consensus        98 ~~~lyS~~~L~~~~~~~~~~~v~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~~~~~-~~~~~iq~Lnivlr~~~~~~~~  176 (252)
                      +++|||..+++.... ..++.+..+++.  ..|++.|+++..+.+..+..++.++.. .+.+++|+|++++++.+.. ..
T Consensus       121 ~~~lyt~~~~~~~~~-~~~~~~~~~~~~--~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~s~-~~  196 (876)
T KOG1041|consen  121 QKTLYTKLELPEGVV-TLDFDVISPKEW--KKFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIATS-QG  196 (876)
T ss_pred             CceeEeccccccccc-eEEEEecCCCCC--cceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhhch-hc
Confidence            999999777775222 345666655432  239999999998888888888887766 7889999999999999987 23


Q ss_pred             eeeecccccCCCCCCCcccCCCcEEEeeeeeeeeeec-CceEEEeecCccccCCCCcHHHHHHHHhcCCCCCC
Q psy5196         177 FVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEICRGLPPEL  248 (252)
Q Consensus       177 ~~~vGr~fF~~~~~~~~~~l~~GlE~w~Gf~~SvR~~-~~l~LNvDvs~~~F~~~~~l~d~i~e~~~~~~~~l  248 (252)
                      +..+|++||. ........+++|.|+|.||++|+|++ |+++||+|+++++||++++|+++++++++-..+.+
T Consensus       197 ~~~~~~sff~-~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~~~~  268 (876)
T KOG1041|consen  197 LNNVGYSFFG-NDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKTRAF  268 (876)
T ss_pred             ccccchheec-CCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCccccc
Confidence            9999999998 42223445899999999999999999 99999999999999999999999999998654433

>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO

Probab=99.80  E-value=2.1e-20  Score=124.01  Aligned_cols=51  Identities=47%  Similarity=0.774  Sum_probs=41.4

Q ss_pred             eeecccccCCCCCCCcccCCCcEEEeeeeeeeeeec-CceEEEeecCccccCCC
Q psy5196         178 VRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEE  230 (252)
Q Consensus       178 ~~vGr~fF~~~~~~~~~~l~~GlE~w~Gf~~SvR~~-~~l~LNvDvs~~~F~~~  230 (252)
                      +.+||+||+ ++. ...+|++|+|+|+||||||||+ ++|+||||+++++||+|
T Consensus         1 ~~vgrsFF~-~~~-~~~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p   52 (52)
T PF08699_consen    1 TAVGRSFFP-PSG-GPVDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP   52 (52)
T ss_dssp             EEETTEEEE--------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred             CccccccCC-CCC-CCccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence            468999999 442 3378999999999999999999 99999999999999975

; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	252
4f3t_A	861	Human Argonaute-2 - Mir-20a Complex Length = 861		2e-17
4ei1_A	859	Crystal Structure Of Human Argonaute2 Length = 859		2e-17

>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 15/215 (6%)
Query: 34  DGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQKVAREY----F 88
           D GT GR  ++  N F +    P + I+HY++ I P+K P R  R +++ + + +    F
Sbjct: 32  DFGTSGRTIKLQANFFEMDI--PKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIF 89
Query: 89  PNSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVE 147
            +    +DG+KNL++   LP G   +   V++  E   KD+ +KV IK    +S  ++ +
Sbjct: 90  GDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEG--KDRIFKVSIKWVSCVSLQALHD 147
Query: 148 FMRTGV-NRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGF 206
            +   + + P   IQALDVV+R   S+   +  VGRS+F+  +      LG G  +W GF
Sbjct: 148 ALSGRLPSVPFETIQALDVVMRHLPSMR--YTPVGRSFFTASEGCS-NPLGGGREVWFGF 204
Query: 207 YQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
           +QS     W+  LN+DV+   F + + VI+ + E+
Sbjct: 205 HQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEV 239

>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 15/215 (6%)
Query: 34  DGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPDK-PVRYMRPVMQKVAREY----F 88
           D GT GR  ++  N F +    P + I+HY++ I P+K P R  R +++ + + +    F
Sbjct: 30  DFGTSGRTIKLQANFFEMDI--PKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIF 87
Query: 89  PNSPCGYDGKKNLFSKGTLPFGT-AMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVE 147
            +    +DG+KNL++   LP G   +   V++  E   KD+ +KV IK    +S  ++ +
Sbjct: 88  GDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEG--KDRIFKVSIKWVSCVSLQALHD 145
Query: 148 FMRTGV-NRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGF 206
            +   + + P   IQALDVV+R   S+   +  VGRS+F+  +      LG G  +W GF
Sbjct: 146 ALSGRLPSVPFETIQALDVVMRHLPSMR--YTPVGRSFFTASEGCS-NPLGGGREVWFGF 202
Query: 207 YQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240
           +QS     W+  LN+DV+   F + + VI+ + E+
Sbjct: 203 HQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEV 237

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
4f3t_A	861	Protein argonaute-2; hydrolase/gene regulation, RN	1e-44
4f1n_A	1046	Kpago; argonaute, RNAI, RNAse H, RNA binding prote	3e-30
3ho1_A	685	Argonaute; argonaute, protein-DNA-RNA complex, nuc	1e-17

>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861

 Score =  159 bits (402), Expect = 1e-44
 Identities = 68/248 (27%), Positives = 119/248 (47%), Gaps = 15/248 (6%)

Query: 2   TIASSSSSSSISSAASGAGSKGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIF 61
            + S +  +    A         ++ P R +   GT GR  ++  N F +    P + I+
Sbjct: 2   AMYSGAGPALAPPAPPPPIQGYAFKPPPRPDF--GTSGRTIKLQANFFEMDI--PKIDIY 57

Query: 62  HYDVAIDPDK-PVRYMRPVMQKVAREY----FPNSPCGYDGKKNLFSKGTLPFGTAMNCT 116
           HY++ I P+K P R  R +++ + + +    F +    +DG+KNL++   LP G      
Sbjct: 58  HYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGR-DKVE 116

Query: 117 VSIFDEERMKDKEYKVEIKKAQEISFASIVEFMR-TGVNRPQIAIQALDVVLREPCSLNA 175
           + +      KD+ +KV IK    +S  ++ + +     + P   IQALDVV+R   S+  
Sbjct: 117 LEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSM-- 174

Query: 176 NFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVI 234
            +  VGRS+F+  +      LG G  +W GF+QS     W+  LN+DV+   F + + VI
Sbjct: 175 RYTPVGRSFFTASEGCS-NPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVI 233

Query: 235 KVIDEICR 242
           + + E+  
Sbjct: 234 EFVCEVLD 241

>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046

 Score =  117 bits (294), Expect = 3e-30
 Identities = 35/299 (11%), Positives = 82/299 (27%), Gaps = 72/299 (24%)

Query: 9   SSSISSAASGAGSKGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKN------------- 55
           S+  +       +  +Y++  R +   GT G +  + TNH  +   N             
Sbjct: 1   STEKTVDQPKEDTHAIYKVENRHDY--GTKGTKVDILTNHILLAVGNDVPTEKIDKELVP 58

Query: 56  ------PNLVIFHYDVAIDPDKPV---------------RYMRPVMQKVAREY----FPN 90
                     IF Y +   P +                      +++ +  E        
Sbjct: 59  KLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQELSKPKKYELIEALLDEDEILYKYR 118

Query: 91  SPCGYDGKKNLFSKGTLPFGTAMNCTVSIFDEER-----------------------MKD 127
               ++G+  ++S   L   T  +    + ++++                       +++
Sbjct: 119 DRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKASLQKKIDPELEE 178

Query: 128 KEYKVEIKKAQEISFASIVEFMRT-------GVNRPQIAIQALDVVLREPCSLNAN-FVR 179
              ++ +K + ++    I     T                  L ++  +  S +   F  
Sbjct: 179 MVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQV 238

Query: 180 VGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVI 237
            G  +F   +  + +    G +L  GF  S         LN       F +    +   
Sbjct: 239 QGNKFFIFNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGD 297

>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685

 Score = 81.2 bits (200), Expect = 1e-17
 Identities = 32/204 (15%), Positives = 59/204 (28%), Gaps = 27/204 (13%)

Query: 40  RRTQVDTNHFAITF-KNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGK 98
            +T+V  N FA+       L  +  +V +DP      + P++ +VAR           G 
Sbjct: 5   GKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARR--------AGGV 56

Query: 99  KNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQI 158
                 G   +       +        +   Y++  K  + +      E           
Sbjct: 57  TVRMGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGE----------- 105

Query: 159 AIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDL-GDGLHLWNGFYQSAGIG--WR 215
               L  + R    L     R+   +       R     G G  +  G      +     
Sbjct: 106 -RSVLSALARR--LLQERLRRLEGVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGA 162

Query: 216 PYLNVDVAHKGFPEEKSVIKVIDE 239
             L VD A++   E  S+   + +
Sbjct: 163 FLLEVDPAYRILCEM-SLEAWLAQ 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
4f3t_A	861	Protein argonaute-2; hydrolase/gene regulation, RN	100.0
4f1n_A	1046	Kpago; argonaute, RNAI, RNAse H, RNA binding prote	100.0
1u04_A	771	Argonaute, hypothetical protein PF0537; RNAI, sile	99.71
1yvu_A	706	Hypothetical protein AQ_1447; RNAse H fold, RNA bi	99.36
3ho1_A	685	Argonaute; argonaute, protein-DNA-RNA complex, nuc	97.3

>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A

Probab=100.00  E-value=4.6e-46  Score=370.61  Aligned_cols=217  Identities=30%  Similarity=0.517  Sum_probs=181.4

Q ss_pred             CCCCCCccCCCCCCCCCCCCCCeEEEEeeeeeeeecCCCeeEEEeEEEeCCC-CChhhhHHHHHHHHHHhC----CCCCe
Q psy5196          19 AGSKGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPD-KPVRYMRPVMQKVAREYF----PNSPC   93 (252)
Q Consensus        19 ~~~~~~~~~p~R~~P~~Gt~G~~i~l~tN~f~i~~~~p~~~iy~Y~V~i~P~-~~~~~~r~i~~~l~~~~~----~~~~~   93 (252)
                      .++...+.+|+|  |++|+.|++|+|+||||+|++  |++.+|||+|+|+|+ .+++++|+||+.+++++.    .+..+
T Consensus        19 ~~~~~~~~~p~R--Pg~Gt~G~~i~l~aN~F~v~~--~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~   94 (861)
T 4f3t_A           19 PIQGYAFKPPPR--PDFGTSGRTIKLQANFFEMDI--PKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKP   94 (861)
T ss_dssp             ------CCCCBC--CCCCCCSEEEEEEESEEEEEC--CSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCC
T ss_pred             ccccccccCCCC--CCCCCCCcEEEEEeeeEEEEC--CCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceE
Confidence            345567899999  999999999999999999997  678999999999998 577889999999988763    23456


Q ss_pred             EecCCcceEecCCCCCCCCCceEEEEeeCCCCccceEEEEEEeecccChhhHHHHHhcCCC-ChhHHHHHHHHHHhCCCc
Q psy5196          94 GYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVN-RPQIAIQALDVVLREPCS  172 (252)
Q Consensus        94 ~yDG~~~lyS~~~L~~~~~~~~~~~v~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~~~~~-~~~~~iq~Lnivlr~~~~  172 (252)
                      ||||+++|||+++||.++. ..++.+..+++++++.|+|+|++++++++++|.+|+.|... .+.++||+||||||+.++
T Consensus        95 afDG~~~l~s~~~L~~~~~-~~~~~v~~~~~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~  173 (861)
T 4f3t_A           95 VFDGRKNLYTAMPLPIGRD-KVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPS  173 (861)
T ss_dssp             EECSSSEEEESSCCSCSSC-EEEEECCC-------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHH
T ss_pred             EEcCcceEEECCcCCCCCc-ceEEEEecCCCCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhcc
Confidence            9999999999999997654 44666666555567899999999999999999999999877 778999999999999888


Q ss_pred             CCCCeeeecccccCCCCCCCcccCCCcEEEeeeeeeeeeec-CceEEEeecCccccCCCCcHHHHHHHHhcC
Q psy5196         173 LNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEICRG  243 (252)
Q Consensus       173 ~~~~~~~vGr~fF~~~~~~~~~~l~~GlE~w~Gf~~SvR~~-~~l~LNvDvs~~~F~~~~~l~d~i~e~~~~  243 (252)
                      .  ++..+||+||+ +..+...+|++|+|+|+|||+||||+ ++|+||||++|++||++++|+|+|.++++.
T Consensus       174 ~--~~~~vGR~Ff~-~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~  242 (861)
T 4f3t_A          174 M--RYTPVGRSFFT-ASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDF  242 (861)
T ss_dssp             H--HSEEETTEEEC-CC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTC
T ss_pred             c--cccccCCCccC-CCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcc
Confidence            7  89999999998 54344568899999999999999999 999999999999999999999999999864

>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}

Probab=100.00  E-value=3.9e-38  Score=315.69  Aligned_cols=216  Identities=16%  Similarity=0.220  Sum_probs=172.2

Q ss_pred             CCCCccCCCCCCCCCCCCCCeEEEEeeeeeeeecCCC--------------------eeEEEeEEEeCCCC---------
Q psy5196          21 SKGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPN--------------------LVIFHYDVAIDPDK---------   71 (252)
Q Consensus        21 ~~~~~~~p~R~~P~~Gt~G~~i~l~tN~f~i~~~~p~--------------------~~iy~Y~V~i~P~~---------   71 (252)
                      .+..+.+|.|  |+|||.|++|.|+||||.+.+. ++                    ..||+|+|+|.|+.         
T Consensus        13 ~~~~~~~p~R--p~yGt~G~~v~l~aN~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~   89 (1046)
T 4f1n_A           13 THAIYKVENR--HDYGTKGTKVDILTNHILLAVG-NDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKP   89 (1046)
T ss_dssp             CCCCCCCCBC--CCCCCCSEEEEEEESEEEEECC-TTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC------------
T ss_pred             ccccccCCCC--CCCCCCCcEEEEEeeEEEEecC-CCccccccccccccccccccccceEEEEEEEEccccccccccccc
Confidence            4568999999  9999999999999999999996 33                    38999999998852         


Q ss_pred             ------ChhhhHHHHHHHHHHh--C-C-CCCeEecCCcceEecCCCC---CCCCCceEEEEeeC-------CC-------
Q psy5196          72 ------PVRYMRPVMQKVAREY--F-P-NSPCGYDGKKNLFSKGTLP---FGTAMNCTVSIFDE-------ER-------  124 (252)
Q Consensus        72 ------~~~~~r~i~~~l~~~~--~-~-~~~~~yDG~~~lyS~~~L~---~~~~~~~~~~v~~~-------~~-------  124 (252)
                            .++++++|+..++++.  . . ...+||||+++|||..+||   ...+   .++|...       ++       
T Consensus        90 ~~~~~~~~~k~~~ii~~ll~e~~~~~~~~~~ia~d~~~~L~s~~~L~~~~l~~~---~~~v~~~~~~~~~~~~~~~~~~~  166 (1046)
T 4f1n_A           90 VPPQELSKPKKYELIEALLDEDEILYKYRDRIAFNGEDTIYSHVPLEEFTLFDG---CWEVSNKQKKKVVPGMGAPSNKA  166 (1046)
T ss_dssp             -----CCHHHHHHHHHHHHHSCTTTGGGTTSEEECSSSEEEESSCGGGSTTCTT---CCC--------------------
T ss_pred             CcccccchhHHHHHHHHHHHhcchhhhcCCceeecCccceEECCcCCccccCCC---ceEEeccccccccCCcccccccc
Confidence                  2567889999988772  2 1 5679999999999999999   3333   2333333       21       


Q ss_pred             ---------CccceEEEEEEeecccChhhHHHHHhcCCCC---h---hHHHHHHHHHHhCCCcCC-CCeeeeccc-ccCC
Q psy5196         125 ---------MKDKEYKVEIKKAQEISFASIVEFMRTGVNR---P---QIAIQALDVVLREPCSLN-ANFVRVGRS-YFSP  187 (252)
Q Consensus       125 ---------~~~~~~~v~I~~~~~i~l~~l~~~l~~~~~~---~---~~~iq~Lnivlr~~~~~~-~~~~~vGr~-fF~~  187 (252)
                               .++++|+|+|+++++|++++|.+|+.++...   .   .+++|+||+||++.+... .....+|++ ||..
T Consensus       167 ~~~~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~  246 (1046)
T 4f1n_A          167 SLQKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIF  246 (1046)
T ss_dssp             -----------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEEC
T ss_pred             cccccccccccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccC
Confidence                     2567899999999999999999999999762   2   689999999999987653 233556655 8874


Q ss_pred             CCCCCcccCCCcEEEeeeeeeeeeec-CceEEEeecCccccCCC-----------------CcHHHHHHHHhc
Q psy5196         188 PDPNRLVDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEE-----------------KSVIKVIDEICR  242 (252)
Q Consensus       188 ~~~~~~~~l~~GlE~w~Gf~~SvR~~-~~l~LNvDvs~~~F~~~-----------------~~l~d~i~e~~~  242 (252)
                      ...+...+|++|+|+|+|||+||||+ +||+||||++|++||++                 ++|+|+|.++++
T Consensus       247 ~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~  319 (1046)
T 4f1n_A          247 NNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYH  319 (1046)
T ss_dssp             STTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHH
T ss_pred             CCCCccccCCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhc
Confidence            43345689999999999999999999 99999999999999984                 799999999876

>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A

Probab=99.71  E-value=8.8e-18  Score=164.47  Aligned_cols=152  Identities=13%  Similarity=0.107  Sum_probs=115.5

Q ss_pred             eEEEEeeeeeeee--cCCCeeEEEeEEEeCCCCChhhhHHHHHHHHHHhCCCCCeEecCCc-ceEecCCCCCCCCCceEE
Q psy5196          41 RTQVDTNHFAITF--KNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKK-NLFSKGTLPFGTAMNCTV  117 (252)
Q Consensus        41 ~i~l~tN~f~i~~--~~p~~~iy~Y~V~i~P~~~~~~~r~i~~~l~~~~~~~~~~~yDG~~-~lyS~~~L~~~~~~~~~~  117 (252)
                      +..|.+|||+|..  . |+ .+|||+|++.|+....++..++..+...+  + .++|||.. .||++++|+.        
T Consensus         3 ~~~~~~n~~~~~~~~~-~~-~~y~y~v~~~p~~~~~~~~~~~~~~~~~~--g-~~~fdg~~~~l~~~~~l~~--------   69 (771)
T 1u04_A            3 KAIVVINLVKINKKII-PD-KIYVYRLFNDPEEELQKEGYSIYRLAYEN--V-GIVIDPENLIIATTKELEY--------   69 (771)
T ss_dssp             EEEEEBSEEEBCGGGS-CS-CEEEEEC------------CCHHHHHHHT--T-EEEEETTTTEEEESSCCCC--------
T ss_pred             ceEEEeeeEEEecccC-CC-eeEEEEeecCChHHHHHHHHHHHHHHhhc--C-cEEecCcceeeeccceecc--------
Confidence            5789999999998  6 88 99999999999854336667777777765  4 88999953 2999999962        


Q ss_pred             EEeeCCCCccceEEEEEEeecccChhhHHHHHhcCCCChhHHHHHHHHHHhCCCcCCCC-----eeeecccccCCCCCCC
Q psy5196         118 SIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNAN-----FVRVGRSYFSPPDPNR  192 (252)
Q Consensus       118 ~v~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~~~~~~~~~~iq~Lnivlr~~~~~~~~-----~~~vGr~fF~~~~~~~  192 (252)
                              ++..+.|+++.+++++                  +|++|+++|+.+.. .+     +..+||+||+ |    
T Consensus        70 --------~~~~~~~~~~~~~~~~------------------~~~~n~i~r~~l~~-~~~~~~~l~~~~r~~~~-~----  117 (771)
T 1u04_A           70 --------EGEFIPEGEISFSELR------------------NDYQSKLVLRLLKE-NGIGEYELSKLLRKFRK-P----  117 (771)
T ss_dssp             --------SSCCEEEEEECGGGSC------------------HHHHHHHHHHHHHH-TTCSHHHHHHHHTTTSC-C----
T ss_pred             --------CCCeEEEEEEEcceec------------------HHHHHHHHHHHHHH-cccchHHHHHHhhhcCC-C----
Confidence                    1235888888888774                  67899999998754 24     7889999998 4    


Q ss_pred             cccCCCcEEEeeeeeeeeeec-CceEEEeecCccccCCCCcHHHHHHHH
Q psy5196         193 LVDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI  240 (252)
Q Consensus       193 ~~~l~~GlE~w~Gf~~SvR~~-~~l~LNvDvs~~~F~~~~~l~d~i~e~  240 (252)
                       ..+ +.+++|+|+-+|||.. ++++||+|++|++++ .+||+|+|.+.
T Consensus       118 -~~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv~r-~~t~~d~~~~~  163 (771)
T 1u04_A          118 -KTF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQS-MKTLWELVNKD  163 (771)
T ss_dssp             -EEE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEEEE-SSCHHHHTTTC
T ss_pred             -ccc-cccEEEECceeeEEecCCceEEEEEeeeeEee-hhHHHHHHHHH
Confidence             233 6788999999999999 999999999999996 58999999764

>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A

Probab=99.36  E-value=7.6e-13  Score=129.19  Aligned_cols=117  Identities=9%  Similarity=0.067  Sum_probs=90.7

Q ss_pred             EecCCcceEecCCCCCCCCCceEEEEeeCCCCccceEEEEEEeecccC----hhhHHHHHhcCCCChhHHHHHHHHHHhC
Q psy5196          94 GYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEIS----FASIVEFMRTGVNRPQIAIQALDVVLRE  169 (252)
Q Consensus        94 ~yDG~~~lyS~~~L~~~~~~~~~~~v~~~~~~~~~~~~v~I~~~~~i~----l~~l~~~l~~~~~~~~~~iq~Lnivlr~  169 (252)
                      .|.-..-.|+..+...  +   +.-+... +|  .  .|+|++++++.    .            ...+++|+++.+|++
T Consensus        50 ~~~~~~~~~~~~~~~~--~---~~~~~~~-~~--~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~  107 (706)
T 1yvu_A           50 TFRREDEFWCAGKVEK--D---TLYLTLS-NG--E--IVELKRVGEEEFRGFQ------------NERECQELFRDFLTK  107 (706)
T ss_dssp             EEEETTEEEESSCCTT--C---CCEEEEC-SS--S--CEEEEECCCEECCCCS------------CHHHHHHHHHHHHHH
T ss_pred             cccccccceecccccc--c---eEEEEcC-CC--C--EEEEEEEEEeeccCCC------------CCHHHHHHHHHHHHH
Confidence            4555556898888763  3   3333332 11  2  56699999887    4            357899999999997


Q ss_pred             CCcCCCCeeeecccccCCCCCCCcccC---CCcEEEeeeeeeeeeec--CceEEEeecCccccCCCCcHHHHHHH
Q psy5196         170 PCSLNANFVRVGRSYFSPPDPNRLVDL---GDGLHLWNGFYQSAGIG--WRPYLNVDVAHKGFPEEKSVIKVIDE  239 (252)
Q Consensus       170 ~~~~~~~~~~vGr~fF~~~~~~~~~~l---~~GlE~w~Gf~~SvR~~--~~l~LNvDvs~~~F~~~~~l~d~i~e  239 (252)
                      . ..  .+..+||+||+ +.  .+..+   .++||+||||.+||+..  ++++||+|++|++. +.+||+|+|.+
T Consensus       108 ~-~l--~~~~igr~~~~-~~--~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshKvl-r~~Tvld~l~~  175 (706)
T 1yvu_A          108 T-KV--KDKFISDFYKK-FR--DKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFRIQ-PFETLQTLLER  175 (706)
T ss_dssp             T-CH--HHHHHHHHHHH-HH--HHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEEEE-ESSCHHHHHHH
T ss_pred             c-CC--hHhhhCccccC-cc--ccccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeeeec-ccchHHHHHHH
Confidence            7 33  66789999999 65  56667   57899999999999998  89999999999955 67999999998

>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A

Probab=97.30  E-value=0.016  Score=56.26  Aligned_cols=174  Identities=20%  Similarity=0.155  Sum_probs=111.3

Q ss_pred             CeEEEEeeeeeeeecC-CCeeEEEeEEEeCCCCChhhhHHHHHHHHHHhCCCCCeEecCCcceEecCCCCCCCCCceEEE
Q psy5196          40 RRTQVDTNHFAITFKN-PNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVS  118 (252)
Q Consensus        40 ~~i~l~tN~f~i~~~~-p~~~iy~Y~V~i~P~~~~~~~r~i~~~l~~~~~~~~~~~yDG~~~lyS~~~L~~~~~~~~~~~  118 (252)
                      .++.|+-|-|.++-.. ++.+.|.|++.+.|.+....-...+..+..+.  +...+==| +.|.|..+ |..-  ..|=.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~-~~~~--~~~~~   78 (685)
T 3ho1_A            5 GKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRA--GGVTVRMG-DGLASWSP-PEVL--VLEGT   78 (685)
T ss_dssp             CCEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTHHHHHHHHHHHT--CSSEEEET-TEEEESSC-TTTS--CCEEE
T ss_pred             cceeEEEeeeecccCChhhCceeEEEEecCCCCCcchHHHHHHHHHHHh--CCeEEeec-CceecccC-chhh--hccch
Confidence            4578999999998553 35799999999998755555556677777765  44433335 67999877 5421  12333


Q ss_pred             EeeCCCCccceEEEEEEeecccChhhHHHHHhcCCCChhHHHH-----HHHHHHhCCCcCCCCeeeecccccCCCCCCCc
Q psy5196         119 IFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQ-----ALDVVLREPCSLNANFVRVGRSYFSPPDPNRL  193 (252)
Q Consensus       119 v~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~~~~~~~~~~iq-----~Lnivlr~~~~~~~~~~~vGr~fF~~~~~~~~  193 (252)
                      |.-.  +....+.+.-.=.+.+|+.+=.+         .+++.     .|+--|++. +   +...-|.-.+- ..  . 
T Consensus        79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~-~~--~-  139 (685)
T 3ho1_A           79 LARM--GQTYAYRLYPKGRRPLDPKDPGE---------RSVLSALARRLLQERLRRL-E---GVWVEGLAVYR-RE--H-  139 (685)
T ss_dssp             EECS--SCEEEEEEEEEEECCCCTTSHHH---------HHHHHHHHHHHHHHHHHTC-S---SSEEETTEEEE-EE--E-
T ss_pred             hccc--cCCcceeeeecccccCCCCChHH---------HHHHHHHHHHHHHHHHHhh-h---ceEEccEEEEe-ec--C-
Confidence            3321  23445777666667788753111         11222     334444444 2   22222322222 11  1 


Q ss_pred             ccCCCcEEEeeeeeeeeeec--CceEEEeecCccccCCCCcHHHHHHHH
Q psy5196         194 VDLGDGLHLWNGFYQSAGIG--WRPYLNVDVAHKGFPEEKSVIKVIDEI  240 (252)
Q Consensus       194 ~~l~~GlE~w~Gf~~SvR~~--~~l~LNvDvs~~~F~~~~~l~d~i~e~  240 (252)
                       .-|.|.|+.+|+--.|.++  +++.|.||..|. |+.+.++.+++.+.
T Consensus       140 -~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~  186 (685)
T 3ho1_A          140 -ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQG  186 (685)
T ss_dssp             -EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHS
T ss_pred             -CCCCceEEecceEEEEEECCCCcEEEEEeehee-ecChhhHHHHHHhC
Confidence             1289999999999999999  899999999998 56789999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d1u04a1	322	b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py	2e-04

>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322

class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 27/185 (14%), Positives = 51/185 (27%), Gaps = 48/185 (25%)

Query: 46  TNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKG 105
            N   I  K     I+ Y +  DP++ ++     + ++A E          G        
Sbjct: 6   INLVKINKKIIPDKIYVYRLFNDPEEELQKEGYSIYRLAYENV--------GIVIDPE-N 56

Query: 106 TLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDV 165
            +   T              K+ EY+ E     EISF        + +     +   L +
Sbjct: 57  LIIATT--------------KELEYEGEFIPEGEISF--------SELRNDYQSKLVLRL 94

Query: 166 VLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQS-----AGIGWRPYLNV 220
           +            ++ R +     P    D      +      S            YL +
Sbjct: 95  LKEN-GIGEYELSKLLRKFR---KPKTFGD----YKVIPSVEMSVIKHDEDF----YLVI 142

Query: 221 DVAHK 225
            + H+
Sbjct: 143 HIIHQ 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1u04a1	322	Argonaute homologue PF0537 {Pyrococcus furiosus [T	99.9

>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.90  E-value=6.5e-25  Score=191.34  Aligned_cols=157  Identities=12%  Similarity=0.080  Sum_probs=115.2

Q ss_pred             eEEEEeeeeeee--ecCCCeeEEEeEEEeCCC-CChhhhHHHHHHHHHHhCCCCCeEecCCcceEecCCCCCCCCCceEE
Q psy5196          41 RTQVDTNHFAIT--FKNPNLVIFHYDVAIDPD-KPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTV  117 (252)
Q Consensus        41 ~i~l~tN~f~i~--~~~p~~~iy~Y~V~i~P~-~~~~~~r~i~~~l~~~~~~~~~~~yDG~~~lyS~~~L~~~~~~~~~~  117 (252)
                      ++.+.+|+|+|+  +. |+ .+|||+|+|.|+ ..++++..++..+....  |..++||| ..||++++||...      
T Consensus         1 ~~~~~~N~~ki~~~~~-p~-~lyqYrV~f~P~~e~~~~r~~ll~~h~~~~--G~~~~fDg-~~l~~~kkL~~~~------   69 (322)
T d1u04a1           1 KAIVVINLVKINKKII-PD-KIYVYRLFNDPEEELQKEGYSIYRLAYENV--GIVIDPEN-LIIATTKELEYEG------   69 (322)
T ss_dssp             EEEEEBSEEEBCGGGS-CS-CEEEEEC------------CCHHHHHHHTT--EEEEETTT-TEEEESSCCCCSS------
T ss_pred             CeEEEEEEEEeecccC-Cc-eeEEEEecCCChhhhHHHHHHHHHHHHHhc--CeEEecCC-cEEecccccCcce------
Confidence            467899999995  43 55 799999999998 45556666776666553  55778899 5799999998532      


Q ss_pred             EEeeCCCCccceEEEEEEeecccChhhHHHHHhcCCCChhHHHHHHHHHHhCCCcCCCCeeeecccccCCCCCCCcccCC
Q psy5196         118 SIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSYFSPPDPNRLVDLG  197 (252)
Q Consensus       118 ~v~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~~~~~~~~~~iq~Lnivlr~~~~~~~~~~~vGr~fF~~~~~~~~~~l~  197 (252)
                                 ++.++++........            ..+++|++|+++|+.+.. .++..+||+||+ |.  .    .
T Consensus        70 -----------e~~~~~~~~~~~~~~------------~~~~~q~~Nil~r~~m~~-l~l~~iGRnyyd-p~--~----~  118 (322)
T d1u04a1          70 -----------EFIPEGEISFSELRN------------DYQSKLVLRLLKENGIGE-YELSKLLRKFRK-PK--T----F  118 (322)
T ss_dssp             -----------CCEEEEEECGGGSCH------------HHHHHHHHHHHHHTTCSH-HHHHHHHTTTSC-CE--E----E
T ss_pred             -----------eEEEEEEEEcccCCC------------cHHHHHHHHHHHHHHhhh-cceeeeccccCC-CC--C----c
Confidence                       233455555544332            356899999999999865 589999999999 64  2    2


Q ss_pred             CcEEEeeeeeeeeeec-CceEEEeecCccccCCCCcHHHHHHHH
Q psy5196         198 DGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI  240 (252)
Q Consensus       198 ~GlE~w~Gf~~SvR~~-~~l~LNvDvs~~~F~~~~~l~d~i~e~  240 (252)
                      +.+|+||||.+||+.. +|++||+|++|++++ .++|+|+|.++
T Consensus       119 ~~levwPGy~TSI~q~E~~ilLc~disHKVmR-~~Tvld~l~~~  161 (322)
T d1u04a1         119 GDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQS-MKTLWELVNKD  161 (322)
T ss_dssp             TTEEEEEEEEEEEEECSSCEEEEEEEEEEEEE-SSCHHHHTTTC
T ss_pred             cceEEcCCeeeeehhhcCceEEEEEeeeeEee-hhhHHHHHHHH
Confidence            6799999999999999 999999999999996 68999999654