Diaphorina citri psyllid: psy521


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
MSEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGLSTSPCGVCPD
ccccccHHHHHHHHHccccccccccccccccccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccEEEccHHHHHHHHHHHccccCEEEEEcccccEEEEEcccccccccccccccccccc
*******KKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKRE*****TNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGLSTSPCGVCPD
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MSEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGLSTSPCGVCPD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
DNA-directed RNA polymerase III subunit RPC6 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. May direct RNA Pol III binding to the TFIIIB-DNA complex. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway.confidentQ2T9S3
Probable DNA-directed RNA polymerase III subunit RPC6 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.confidentQ9VD25
DNA-directed RNA polymerase III subunit RPC6 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. May direct RNA Pol III binding to the TFIIIB-DNA complex. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway.confidentQ921X6

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0032728 [BP]positive regulation of interferon-beta productionprobableGO:0051240, GO:0032648, GO:0001817, GO:0032481, GO:0065007, GO:0051239, GO:0032479, GO:0048518, GO:0008150, GO:0050789, GO:0001819
GO:0005634 [CC]nucleusprobableGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226
GO:0045089 [BP]positive regulation of innate immune responseprobableGO:0050776, GO:0045088, GO:0080134, GO:0048584, GO:0048583, GO:0050778, GO:0031349, GO:0002684, GO:0002682, GO:0008150, GO:0048518, GO:0065007, GO:0050789, GO:0031347

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3MWM, chain A
Confidence level:probable
Coverage over the Query: 70-82,99-155
View the alignment between query and template
View the model in PyMOL
Template: 2DK5, chain A
Confidence level:probable
Coverage over the Query: 41-51
View the alignment between query and template
View the model in PyMOL
Template: 3T5X, chain A
Confidence level:probable
Coverage over the Query: 56-88,99-144
View the alignment between query and template
View the model in PyMOL