Psyllid ID: psy521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MSEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGLSTSPCGVCPD
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHcccccccccccccccccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccccEEEccHHHHHHHHHHHccccEEEEEEcccccEEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEccccccccccccEEEEEEccccccEEEEEEEcccccccccccccccccHcHHHHHHHHHHHHHHHHHcccccHccccccccccccccccHHHHHHHHHHcccccEEccHHHHHHHHHHHHccccEEEEEcccccEEEEEccccccccccEEcccccccc
Coil and Loop (DISEMBL)
mseiaskkKVYMLFdlepdrsltggtwyqdqdfeasKKKVYMLFdlepdrsltggtwyqdqdfEVEFVDVLNQQCYRFLQLKRektanntngplVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLfdgkieqinnidgtdmyravspyfavtglstspcgvcpd
Flexible Loop (DISEMBL)
mseiaskkkvyMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKrektanntngplvaqrlacatPKEVRKFITdlgiskvelseeDIRTILEtllfdgkiEQINNIDGTDMYRAVSPYFAvtglstspcgvcpd
Low Complexity Region (SEG)
MSEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGLSTSPCGVCPD
Disordered region (IsUnstruct)
*********VYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGLSTSPCG****
Disordered Region (DISOPRED)
*******KKVYMLFDLEPDRSL************ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFL*******************LACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGLSTSPCGVCPD
Disordered Region (DISEMBL)
MSEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGLSTSPCGVCPD
Disordered Region (DISPRO)
*****SKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKRE*****TNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGLSTSPCGVCPD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGLSTSPCGVCPD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q9VD25	293	Probable DNA-directed RNA	yes	N/A	0.820	0.484	0.584	5e-46
Q2T9S3	316	DNA-directed RNA polymera	yes	N/A	0.797	0.436	0.547	2e-41
Q9H1D9	316	DNA-directed RNA polymera	yes	N/A	0.797	0.436	0.540	4e-41
Q921X6	316	DNA-directed RNA polymera	yes	N/A	0.797	0.436	0.533	1e-40
P91529	296	Probable DNA-directed RNA	yes	N/A	0.774	0.452	0.359	1e-18
O94553	301	Probable DNA-directed RNA	yes	N/A	0.763	0.438	0.338	6e-16
P32910	317	DNA-directed RNA polymera	yes	N/A	0.630	0.343	0.325	1e-11
Q86JM3	293	DNA-directed RNA polymera	yes	N/A	0.734	0.433	0.246	2e-09

>sp|Q9VD25|RPC6_DROME Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster GN=CG5380 PE=2 SV=1

 Score =  183 bits (465), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 83/142 (58%), Positives = 107/142 (75%)

Query: 31  QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
           +   ASKKKVYML++LEPD S+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KR+      
Sbjct: 128 KSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKR 187

Query: 91  NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
            GPL  ++++C T  EV+KFI+DLGISKV L+E D+ TIL+T+++DG  E++   DG+ +
Sbjct: 188 EGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFV 247

Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
           YRAV+     TGL   PCG+CP
Sbjct: 248 YRAVNAPLPPTGLVQMPCGICP 269

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.
Drosophila melanogaster (taxid: 7227)

>sp|Q2T9S3|RPC6_BOVIN DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus GN=POLR3F PE=2 SV=1

 Score =  168 bits (425), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)

Query: 35  ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
           ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E    +   P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPM 203

Query: 95  VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
           + +  + A+  EV K+I +LGISKVELS EDI TIL TL++DGK+E          + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263

Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
           DG   +YRAVSP    TGL  +PCG+CP
Sbjct: 264 DGHMKLYRAVSPIIPPTGLVRAPCGLCP 291

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. May direct RNA Pol III binding to the TFIIIB-DNA complex. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway.

Bos taurus (taxid: 9913)

>sp|Q9H1D9|RPC6_HUMAN DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens GN=POLR3F PE=1 SV=1

 Score =  167 bits (422), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 10/148 (6%)

Query: 35  ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
           ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E    +   P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 203

Query: 95  VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
           + +  + A+  EV K+I +LGISKVELS EDI TIL TL++DGK+E          + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263

Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
           DG   +YRAV+P    TGL  +PCG+CP
Sbjct: 264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. May direct RNA Pol III binding to the TFIIIB-DNA complex. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts, such as Epstein-Barr virus-encoded RNAs (EBERs) induce type I interferon and NF- Kappa-B through the RIG-I pathway.

Homo sapiens (taxid: 9606)

>sp|Q921X6|RPC6_MOUSE DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus GN=Polr3f PE=1 SV=1

 Score =  165 bits (418), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/148 (53%), Positives = 105/148 (70%), Gaps = 10/148 (6%)

Query: 35  ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
           ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E    +   P+
Sbjct: 144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPV 203

Query: 95  VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
           + +  + A+  EV K+I +LGISKVELS EDI TIL TL++DGK+E          + ++
Sbjct: 204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263

Query: 146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
           DG   +YRAV+P    TG+  +PCG+CP
Sbjct: 264 DGHMKLYRAVNPILPPTGVVRAPCGLCP 291

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. May direct RNA Pol III binding to the TFIIIB-DNA complex. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway.

Mus musculus (taxid: 10090)

>sp|P91529|RPC6_CAEEL Probable DNA-directed RNA polymerase III subunit RPC6 OS=Caenorhabditis elegans GN=W09C3.4 PE=3 SV=1

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 35  ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
            + +K Y+LF +EPD SLTGGT+Y DQ  + E ++ L   C  +   +R+   +     +
Sbjct: 136 GTTRKCYILFSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRRKHAIDENPNNI 195

Query: 95  VAQRLAC-ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
             QR A    P+E+ +FIT+  +  V LS ED+  ILE  + DG IE+    DG    RA
Sbjct: 196 QMQREASYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTIER--RADGK--IRA 251

Query: 154 VSPYFAVTGLSTSPCGVCP 172
             P  +++ L + PC +CP
Sbjct: 252 CPPRSSISPLVSVPCAICP 270

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.

Caenorhabditis elegans (taxid: 6239)

>sp|O94553|RPC6_SCHPO Probable DNA-directed RNA polymerase III subunit rpc6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc6 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 7/139 (5%)

Query: 38  KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGP-LV- 95
           +K+YML+DL P   LTGG W+ DQ+ +VEF++ L +  YR++  K         GP LV 
Sbjct: 142 RKIYMLYDLVPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHSKSFPPKKAAMGPDLVW 201

Query: 96  -AQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
             +     T  ++  ++    I+KV+LS  ++ ++++ L++DGK+E+ +  DG   YRA+
Sbjct: 202 GPEYNGYPTALQIHNWLRSTNITKVDLSLANVISLVDVLIYDGKVEKRS--DGAS-YRAI 258

Query: 155 SPYFA-VTGLSTSPCGVCP 172
                 +   + SPCG CP
Sbjct: 259 RVNNENIDAFTESPCGNCP 277

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32910|RPC6_YEAST DNA-directed RNA polymerase III subunit RPC6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC34 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 17/126 (13%)

Query: 38  KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKT-----ANNTNG 92
           +K+YML+ L+P   +TGG W+ D + ++EF++ L    +RF+    E T      N  NG
Sbjct: 145 RKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFI---SENTFPNGFKNFENG 201

Query: 93  PLVAQRLA-----CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDG 147
           P      A      +T +E+ +FIT   ++ VEL+  +IR++ E L++D K+E++ +   
Sbjct: 202 PKKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTH--- 258

Query: 148 TDMYRA 153
            D YR 
Sbjct: 259 -DCYRV 263

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Involved in recruitment of Pol III to the preinitiation complex. Involved in the configuration of an initiation-competent form of RNA polymerase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q86JM3|RPC6_DICDI DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum GN=polr3f PE=3 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 23/150 (15%)

Query: 31  QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
           +  ++ +KKVYML+++EP R +TGG  Y DQ ++ +++ ++      F+        +N 
Sbjct: 127 KSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMHIKTFV--------DNK 178

Query: 91  NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
               +A  +       +RK   +   +   L  EDI+ ++ T+++DG IE++ +     M
Sbjct: 179 GAVDLADIITY-----LRKVAEE--ATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGAM 231

Query: 151 --------YRAVSPYFAVTGLSTSPCGVCP 172
                   Y+       V      PCG CP
Sbjct: 232 LGRRSGILYKPTKTPIPVNNFCNMPCGNCP 261

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. May direct RNA Pol III binding to the TFIIIB-DNA complex.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
156551159	305	PREDICTED: DNA-directed RNA polymerase I	0.797	0.452	0.630	4e-46
125775055	293	GA18836 [Drosophila pseudoobscura pseudo	0.820	0.484	0.598	2e-45
195445244	295	GK11949 [Drosophila willistoni] gi|19416	0.820	0.481	0.591	2e-45
312377801	318	hypothetical protein AND_10775 [Anophele	0.803	0.437	0.589	7e-45
195390233	293	GJ24071 [Drosophila virilis] gi|19415185	0.820	0.484	0.598	8e-45
195053568	294	GH19703 [Drosophila grimshawi] gi|193895	0.820	0.482	0.598	9e-45
332027979	306	DNA-directed RNA polymerase III subunit	0.809	0.457	0.607	1e-44
195112652	293	GI22278 [Drosophila mojavensis] gi|19391	0.820	0.484	0.598	1e-44
383863773	310	PREDICTED: DNA-directed RNA polymerase I	0.797	0.445	0.615	1e-44
307174837	311	DNA-directed RNA polymerase III subunit	0.797	0.443	0.615	1e-44

>gi|156551159|ref|XP_001604309.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Nasonia vitripennis]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 107/138 (77%)

Query: 35  ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
           ASKKKV+ML++LEPDRS+TGG WYQDQDFE EFVDVLNQQCYRFL+ KRE T N  NGP+
Sbjct: 143 ASKKKVFMLYNLEPDRSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEQKRESTKNYINGPI 202

Query: 95  VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
             +    A+ KEV KFI+DLGISKV+LS ED+  IL TL++DGK+E+  + DG+ +YRA+
Sbjct: 203 AEKNATFASSKEVWKFISDLGISKVKLSVEDLEMILNTLIYDGKVERTVSSDGSSLYRAI 262

Query: 155 SPYFAVTGLSTSPCGVCP 172
           +P     GL  S CGVCP
Sbjct: 263 NPLLNSPGLVQSSCGVCP 280

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125775055|ref|XP_001358779.1| GA18836 [Drosophila pseudoobscura pseudoobscura] gi|195145010|ref|XP_002013489.1| GL24167 [Drosophila persimilis] gi|54638520|gb|EAL27922.1| GA18836 [Drosophila pseudoobscura pseudoobscura] gi|194102432|gb|EDW24475.1| GL24167 [Drosophila persimilis]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 108/142 (76%)

Query: 31  QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
           +   ASKKKVYML++LEPDRS+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KRE      
Sbjct: 128 KSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRENAEKKR 187

Query: 91  NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
           +GPL  ++++C T  +V KFI+DLGISKV L E+D+ TIL+T+++DG  E+I   DG+ +
Sbjct: 188 DGPLALKQMSCCTVSDVHKFISDLGISKVNLDEDDLETILKTVVYDGNAERIMQQDGSYV 247

Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
           YRAV+     TGL   PCG+CP
Sbjct: 248 YRAVNLPLPPTGLVQMPCGICP 269

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195445244|ref|XP_002070239.1| GK11949 [Drosophila willistoni] gi|194166324|gb|EDW81225.1| GK11949 [Drosophila willistoni]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 107/142 (75%)

Query: 31  QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
           +   ASKKKVYML++LEPDR++TGG WYQDQDFEVEFVDVLNQQC RFLQ+KRE      
Sbjct: 130 KSVNASKKKVYMLYNLEPDRTVTGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRENAEKKR 189

Query: 91  NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
            GPLV + ++C T  EV KFI+DLG+SKV L E+D+ TIL+T+++DG  E++   DG+ +
Sbjct: 190 EGPLVLREMSCCTVNEVHKFISDLGVSKVNLDEDDLETILKTVVYDGNAERVMKSDGSYV 249

Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
           YRAV+     TGL   PCG+CP
Sbjct: 250 YRAVNSPLPPTGLIQMPCGICP 271

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377801|gb|EFR24541.1| hypothetical protein AND_10775 [Anopheles darlingi]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 82/139 (58%), Positives = 107/139 (76%)

Query: 34  EASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGP 93
           +ASKKKVYML++LEPDRS+TGG WYQDQDFE EFVDVLNQQC RFL++KRE   N+  GP
Sbjct: 156 QASKKKVYMLYNLEPDRSITGGAWYQDQDFEAEFVDVLNQQCLRFLRMKRETARNSGEGP 215

Query: 94  LVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA 153
           L  Q+L+  +  +V +FI+DLGISK+ L E+D+ TIL+T+++DGK E+I N+DG  +YRA
Sbjct: 216 LAVQKLSVCSVADVHRFISDLGISKISLDEDDLETILKTVVYDGKAERIANMDGGFLYRA 275

Query: 154 VSPYFAVTGLSTSPCGVCP 172
           +       GL   PCG+CP
Sbjct: 276 IESPLEPPGLVQMPCGICP 294

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195390233|ref|XP_002053773.1| GJ24071 [Drosophila virilis] gi|194151859|gb|EDW67293.1| GJ24071 [Drosophila virilis]

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%)

Query: 31  QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
           +   ASKKKVYML+++E DRS+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KRE      
Sbjct: 128 KSVNASKKKVYMLYNMEADRSVTGGAWYQDQDFEVEFVDVLNQQCLRFLQMKREGAEKKR 187

Query: 91  NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
           +GPL  ++++C T KEV KFI+DLGISKV L E+D+ TIL+T+++DG  E+I   DGT +
Sbjct: 188 DGPLAFKQMSCCTVKEVHKFISDLGISKVNLDEDDLETILKTVVYDGSAERILQSDGTYV 247

Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
           YRAV+      GL   PCG+CP
Sbjct: 248 YRAVNLPLPAPGLVQMPCGICP 269

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195053568|ref|XP_001993698.1| GH19703 [Drosophila grimshawi] gi|193895568|gb|EDV94434.1| GH19703 [Drosophila grimshawi]

 Score =  184 bits (468), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%)

Query: 31  QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
           +   ASKKKVYML+++E DRS+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KRE      
Sbjct: 129 KSVNASKKKVYMLYNMEADRSVTGGAWYQDQDFEVEFVDVLNQQCLRFLQMKREGAEKKR 188

Query: 91  NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
           +GPL  ++++C T KEV KFI+DLGISKV L E+D+ TIL+T+++DG  E+I   DGT +
Sbjct: 189 DGPLAFKQMSCCTVKEVHKFISDLGISKVNLDEDDLETILKTVVYDGNAERILQSDGTYV 248

Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
           YRAV+      GL   PCG+CP
Sbjct: 249 YRAVNLPLPAPGLVQMPCGICP 270

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027979|gb|EGI68030.1| DNA-directed RNA polymerase III subunit RPC6 [Acromyrmex echinatior]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/140 (60%), Positives = 104/140 (74%)

Query: 33  FEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNG 92
            EASKKKVYML++LEP  S+TGG WYQDQDFE EFVDVLNQQCYRFL+ KREKT N   G
Sbjct: 143 VEASKKKVYMLYNLEPAESVTGGAWYQDQDFETEFVDVLNQQCYRFLEQKREKTKNCNTG 202

Query: 93  PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYR 152
           P+ A+ +  A+ K+V K+I+DLG+SKV+L+  DI  IL TL+ DGKIEQ    DG  +YR
Sbjct: 203 PIAARNMTYASSKDVLKYISDLGVSKVKLTVTDIEVILNTLICDGKIEQTLTNDGNHLYR 262

Query: 153 AVSPYFAVTGLSTSPCGVCP 172
           A+ P     GL  +PCG+CP
Sbjct: 263 AIQPLLNPMGLVKTPCGLCP 282

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112652|ref|XP_002000886.1| GI22278 [Drosophila mojavensis] gi|193917480|gb|EDW16347.1| GI22278 [Drosophila mojavensis]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 106/142 (74%)

Query: 31  QDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNT 90
           +   ASKKKVYML++LE DRS+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KRE      
Sbjct: 128 KSVNASKKKVYMLYNLEADRSVTGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRESAEKKR 187

Query: 91  NGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDM 150
           +GPL  ++++C T KEV KFI+DLGISKV L E+D+ TIL+T+++DG  E+I   DGT +
Sbjct: 188 DGPLAFKQMSCCTVKEVHKFISDLGISKVNLDEDDLETILKTVVYDGNAERILQSDGTYV 247

Query: 151 YRAVSPYFAVTGLSTSPCGVCP 172
           YRAV+      G    PCG+CP
Sbjct: 248 YRAVNLPLPAPGFVQMPCGICP 269

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863773|ref|XP_003707354.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Megachile rotundata]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 109/138 (78%)

Query: 35  ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
           ASKKKVYML++LEPD S+TGG WYQDQDFE EFVDVLNQQCYRFL+ KRE+  ++  GP+
Sbjct: 149 ASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEKKREQINSSKGGPI 208

Query: 95  VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
           +A+ +  A+ KEV KFI+DLGISKV+LS +D+  IL TL++DGK+E+  + DG+++YRAV
Sbjct: 209 IARNVTFASSKEVWKFISDLGISKVKLSVDDLEMILNTLVYDGKVERTLSGDGSNLYRAV 268

Query: 155 SPYFAVTGLSTSPCGVCP 172
            P     GL  S CGVCP
Sbjct: 269 EPLLNPPGLIKSTCGVCP 286

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174837|gb|EFN65131.1| DNA-directed RNA polymerase III subunit RPC6 [Camponotus floridanus]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 108/138 (78%)

Query: 35  ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
           ASKKKVYML++LEPD S+TGG WYQDQDFE EFVDVLNQQCYRFL+ K+EKT N   GP+
Sbjct: 150 ASKKKVYMLYNLEPDESITGGAWYQDQDFETEFVDVLNQQCYRFLEQKKEKTKNCNIGPV 209

Query: 95  VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
            A+ +  A+ K+V KFI+DLGISKV+LS  +I  IL TL++DGK+E+I   DG+++YRA+
Sbjct: 210 AARNMTFASSKDVWKFISDLGISKVKLSVTNIEMILNTLVYDGKVERILAGDGSNLYRAI 269

Query: 155 SPYFAVTGLSTSPCGVCP 172
            P     GL  +PCG+CP
Sbjct: 270 EPLVISPGLIRTPCGLCP 287

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
FB|FBgn0038951	293	CG5380 [Drosophila melanogaste	0.797	0.470	0.601	3.5e-43
UNIPROTKB|F1MYX7	316	POLR3F "DNA-directed RNA polym	0.797	0.436	0.547	1.3e-38
UNIPROTKB|E1BU41	314	POLR3F "Uncharacterized protei	0.797	0.439	0.547	1.6e-38
UNIPROTKB|Q2T9S3	316	POLR3F "DNA-directed RNA polym	0.797	0.436	0.547	2.1e-38
UNIPROTKB|F1SBH4	316	POLR3F "Uncharacterized protei	0.797	0.436	0.540	2.1e-38
UNIPROTKB|E2RG78	316	POLR3F "Uncharacterized protei	0.797	0.436	0.540	2.6e-38
UNIPROTKB|J9P638	323	POLR3F "Uncharacterized protei	0.797	0.427	0.540	2.6e-38
UNIPROTKB|Q9H1D9	316	POLR3F "DNA-directed RNA polym	0.797	0.436	0.540	3.4e-38
ZFIN|ZDB-GENE-040426-972	314	polr3f "polymerase (RNA) III (	0.797	0.439	0.540	5.5e-38
MGI|MGI:1924086	316	Polr3f "polymerase (RNA) III (	0.797	0.436	0.533	8.9e-38

FB|FBgn0038951 CG5380 [Drosophila melanogaster (taxid:7227)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 83/138 (60%), Positives = 106/138 (76%)

Query:    35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
             ASKKKVYML++LEPD S+TGG WYQDQDFEVEFVDVLNQQC RFLQ+KR+       GPL
Sbjct:   132 ASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPL 191

Query:    95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
               ++++C T  EV+KFI+DLGISKV L+E D+ TIL+T+++DG  E++   DG+ +YRAV
Sbjct:   192 AFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFVYRAV 251

Query:   155 SPYFAVTGLSTSPCGVCP 172
             +     TGL   PCG+CP
Sbjct:   252 NAPLPPTGLVQMPCGICP 269

GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS;NAS

GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS

GO:0006383 "transcription from RNA polymerase III promoter" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1MYX7 POLR3F "DNA-directed RNA polymerase III subunit RPC6" [Bos taurus (taxid:9913)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 81/148 (54%), Positives = 105/148 (70%)

Query:    35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
             ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E    +   P+
Sbjct:   144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 203

Query:    95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
             + +  + A+  EV K+I +LGISKVELS EDI TIL TL++DGK+E          + ++
Sbjct:   204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263

Query:   146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
             DG   +YRAVSP    TGL  +PCG+CP
Sbjct:   264 DGHMKLYRAVSPIIPPTGLVRAPCGLCP 291

GO:0045089 "positive regulation of innate immune response" evidence=IEA

GO:0032728 "positive regulation of interferon-beta production" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E1BU41 POLR3F "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 81/148 (54%), Positives = 105/148 (70%)

Query:    35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
             ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E    +   P+
Sbjct:   142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPM 201

Query:    95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
             + +  + A+  EV K+I +LGISKVELS EDI TIL TL++DGK+E          + ++
Sbjct:   202 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 261

Query:   146 DGT-DMYRAVSPYFAVTGLSTSPCGVCP 172
             DG   +YRAVSP    TGL  +PCG+CP
Sbjct:   262 DGQMKLYRAVSPLIQPTGLVRTPCGLCP 289

GO:0003677 "DNA binding" evidence=IEA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0032728 "positive regulation of interferon-beta production" evidence=IEA

GO:0045089 "positive regulation of innate immune response" evidence=IEA

UNIPROTKB|Q2T9S3 POLR3F "DNA-directed RNA polymerase III subunit RPC6" [Bos taurus (taxid:9913)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 81/148 (54%), Positives = 105/148 (70%)

Query:    35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
             ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E    +   P+
Sbjct:   144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPM 203

Query:    95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
             + +  + A+  EV K+I +LGISKVELS EDI TIL TL++DGK+E          + ++
Sbjct:   204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263

Query:   146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
             DG   +YRAVSP    TGL  +PCG+CP
Sbjct:   264 DGHMKLYRAVSPIIPPTGLVRAPCGLCP 291

GO:0003677 "DNA binding" evidence=IEA

GO:0045089 "positive regulation of innate immune response" evidence=ISS

GO:0032728 "positive regulation of interferon-beta production" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0051607 "defense response to virus" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1SBH4 POLR3F "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 80/148 (54%), Positives = 106/148 (71%)

Query:    35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
             ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E    +   P+
Sbjct:   144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPV 203

Query:    95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
             + +  + A+  EV K+I +LGISKVELS EDI TIL TL++DGK+E          + ++
Sbjct:   204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263

Query:   146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
             DG   +YRAV+P  + TGL  +PCG+CP
Sbjct:   264 DGHMKLYRAVNPIISPTGLVRAPCGLCP 291

GO:0045089 "positive regulation of innate immune response" evidence=IEA

GO:0032728 "positive regulation of interferon-beta production" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2RG78 POLR3F "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 80/148 (54%), Positives = 105/148 (70%)

Query:    35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
             ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E    +   P+
Sbjct:   144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 203

Query:    95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
             + +  + A+  EV K+I +LGISKVELS EDI TIL TL++DGK+E          + ++
Sbjct:   204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263

Query:   146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
             DG   +YRAV+P    TGL  +PCG+CP
Sbjct:   264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|J9P638 POLR3F "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 80/148 (54%), Positives = 105/148 (70%)

Query:    35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
             ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E    +   P+
Sbjct:   151 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPM 210

Query:    95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
             + +  + A+  EV K+I +LGISKVELS EDI TIL TL++DGK+E          + ++
Sbjct:   211 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 270

Query:   146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
             DG   +YRAV+P    TGL  +PCG+CP
Sbjct:   271 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 298

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q9H1D9 POLR3F "DNA-directed RNA polymerase III subunit RPC6" [Homo sapiens (taxid:9606)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 80/148 (54%), Positives = 105/148 (70%)

Query:    35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
             ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E    +   P+
Sbjct:   144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPM 203

Query:    95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
             + +  + A+  EV K+I +LGISKVELS EDI TIL TL++DGK+E          + ++
Sbjct:   204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263

Query:   146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
             DG   +YRAV+P    TGL  +PCG+CP
Sbjct:   264 DGHMKLYRAVNPIIPPTGLVRAPCGLCP 291

GO:0003677 "DNA binding" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

GO:0051607 "defense response to virus" evidence=IEA

GO:0005666 "DNA-directed RNA polymerase III complex" evidence=NAS

GO:0006359 "regulation of transcription from RNA polymerase III promoter" evidence=NAS

GO:0032728 "positive regulation of interferon-beta production" evidence=IMP

GO:0045089 "positive regulation of innate immune response" evidence=IMP

GO:0003899 "DNA-directed RNA polymerase activity" evidence=NAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006383 "transcription from RNA polymerase III promoter" evidence=TAS

GO:0006385 "transcription elongation from RNA polymerase III promoter" evidence=TAS

GO:0006386 "termination of RNA polymerase III transcription" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040426-972 polr3f "polymerase (RNA) III (DNA directed) polypeptide F" [Danio rerio (taxid:7955)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 80/148 (54%), Positives = 104/148 (70%)

Query:    35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
             ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+ LNQQC++FLQ K E   ++   P+
Sbjct:   142 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEALNQQCFKFLQSKAETARDSKQSPM 201

Query:    95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
             V +  + AT  EV K+I +LGISKV+LS EDI TIL TL+FDGK+E          + ++
Sbjct:   202 VQRNSSFATSHEVWKYICELGISKVDLSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSV 261

Query:   146 DGT-DMYRAVSPYFAVTGLSTSPCGVCP 172
             DG   +YR V+P    TGL  +PCG+CP
Sbjct:   262 DGQMKLYRGVNPIIQPTGLVKTPCGLCP 289

GO:0003677 "DNA binding" evidence=IEA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

MGI|MGI:1924086 Polr3f "polymerase (RNA) III (DNA directed) polypeptide F" [Mus musculus (taxid:10090)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 79/148 (53%), Positives = 105/148 (70%)

Query:    35 ASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPL 94
             ASKKKVYML++L+PDRS+TGG WY DQDFE EFV+VLNQQC++FLQ K E    +   P+
Sbjct:   144 ASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPV 203

Query:    95 VAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ---------INNI 145
             + +  + A+  EV K+I +LGISKVELS EDI TIL TL++DGK+E          + ++
Sbjct:   204 IQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSV 263

Query:   146 DG-TDMYRAVSPYFAVTGLSTSPCGVCP 172
             DG   +YRAV+P    TG+  +PCG+CP
Sbjct:   264 DGHMKLYRAVNPILPPTGVVRAPCGLCP 291

GO:0003677 "DNA binding" evidence=IEA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0032728 "positive regulation of interferon-beta production" evidence=ISO

GO:0045087 "innate immune response" evidence=IEA

GO:0045089 "positive regulation of innate immune response" evidence=ISO

GO:0051607 "defense response to virus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2T9S3	RPC6_BOVIN	No assigned EC number	0.5472	0.7976	0.4367	yes	N/A
Q9VD25	RPC6_DROME	No assigned EC number	0.5845	0.8208	0.4846	yes	N/A
Q921X6	RPC6_MOUSE	No assigned EC number	0.5337	0.7976	0.4367	yes	N/A
Q9H1D9	RPC6_HUMAN	No assigned EC number	0.5405	0.7976	0.4367	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
pfam05158	312	pfam05158, RNA_pol_Rpc34, RNA polymerase Rpc34 sub	7e-50
COG5111	301	COG5111, RPC34, DNA-directed RNA polymerase III, s	1e-24

>gnl|CDD|218472 pfam05158, RNA_pol_Rpc34, RNA polymerase Rpc34 subunit

 Score =  162 bits (412), Expect = 7e-50
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 13/153 (8%)

Query: 33  FEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKRE---KTANN 89
            +A  +K+YML++LEP   +TGG WY D + +VEF++ L +  +RF+  K          
Sbjct: 136 VKAPTRKMYMLYNLEPSEEVTGGPWYTDGELDVEFINTLRRVIFRFVSQKTYVNGFGGEK 195

Query: 90  TNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD 149
              P  A   +  T +E+  FI +LGI+ V LSEEDI+ ++ETL++DGK+E++    G  
Sbjct: 196 KALPYPAGYKSYPTVEEIATFINELGITNVRLSEEDIQQLVETLVYDGKLEKVKPGAGYR 255

Query: 150 MYRAV----------SPYFAVTGLSTSPCGVCP 172
           + R                   GL  +PCG CP
Sbjct: 256 LQRVTLQEVLQMSQKRRPLPANGLVEAPCGNCP 288

Subunit specific to RNA Pol III, the tRNA specific polymerase. The C34 subunit of yeast RNA Pol III is part of a subcomplex of three subunits which have no counterpart in the other two nuclear RNA polymerases. This subunit interacts with TFIIIB70 and is therefore participates in Pol III recruitment. Length = 312

>gnl|CDD|227442 COG5111, RPC34, DNA-directed RNA polymerase III, subunit C34 [Transcription]

 Score = 97.0 bits (241), Expect = 1e-24
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 38  KKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQ 97
           +K+YML+DL P   +TGG W+ D + +VEF+  L +   RFL+       N   GP V  
Sbjct: 142 RKIYMLYDLVPSEEITGGPWFTDNELDVEFIARLLEIIERFLEKNLFPRKNFEEGPNVFY 201

Query: 98  RLAC---ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV 154
                   T +++  ++ ++ I  V L  +++ ++ + L++DGK+E++++      YRA 
Sbjct: 202 APKYEDYPTLEDIMNYVRNVNILSVPLRLDNLESLADVLVYDGKVEKLHS-GPIYRYRAF 260

Query: 155 SPYFAVTGLSTSPCGVCP 172
            PY A       P G   
Sbjct: 261 KPY-AKNQGEGEPAGNKA 277

Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG3233|consensus	297		100.0
PF05158	327	RNA_pol_Rpc34: RNA polymerase Rpc34 subunit; Inter	100.0
COG5111	301	RPC34 DNA-directed RNA polymerase III, subunit C34	100.0
PF05158	327	RNA_pol_Rpc34: RNA polymerase Rpc34 subunit; Inter	99.22
KOG3233|consensus	297		99.17
COG5111	301	RPC34 DNA-directed RNA polymerase III, subunit C34	99.14
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	95.17
PF01475	120	FUR: Ferric uptake regulator family; InterPro: IPR	94.85
cd07153	116	Fur_like Ferric uptake regulator(Fur) and related	94.23
PF08672	60	APC2: Anaphase promoting complex (APC) subunit 2;	93.75
PRK09462	148	fur ferric uptake regulator; Provisional	92.24
COG0735	145	Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani	89.77
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	89.41
PF08784	102	RPA_C: Replication protein A C terminal; InterPro:	82.84
COG3682	123	Predicted transcriptional regulator [Transcription	81.06
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	80.75

>KOG3233|consensus

Probab=100.00  E-value=1.1e-45  Score=314.29  Aligned_cols=144  Identities=49%  Similarity=0.889  Sum_probs=133.6

Q ss_pred             eeecccccccceeEEEeeccCCCcCcccccceecccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHH
Q psy521           27 WYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKE  106 (173)
Q Consensus        27 ~~~d~sV~~~~rk~Yml~~l~Ps~eiTGG~WYtD~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~e  106 (173)
                      .++.++|++++||+||||+++||.++|||+|||||+||.|||+.|.++|++||+++++++.++..+|...++.+|+|++|
T Consensus       130 IKsVKsv~n~~~KvYmLy~leP~~elTGG~WytDqdlDvEfIe~L~~~c~~fl~~~~~~~~~~~~gp~~~~~~~~~t~~e  209 (297)
T KOG3233|consen  130 IKSVKSVKNSRKKVYMLYDLEPDSELTGGTWYTDQDLDVEFIEVLKQICVRFLESKRFPAEKNVEGPMFVRNESYPTVQE  209 (297)
T ss_pred             HHHHHhhcCCCceEEEEecccccccccCCcccccccccHHHHHHHHHHHHHHHHhcccchhhccccchhhhhccCCCHHH
Confidence            34578889999999999999999999999999999999999999999999999999999887778998888889999999


Q ss_pred             HHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEeecCCcCCCCc-cccCccCCCC
Q psy521          107 VRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSPYFAVTGL-STSPCGVCPD  173 (173)
Q Consensus       107 I~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~~~~~~~~~~-~~~PCG~CP~  173 (173)
                      |++||++.+|++|+|+.+|+++|+++|||||+||+..  ||. +||+++...++.++ +++|||.||+
T Consensus       210 i~~~i~~l~I~nV~Lsl~dleti~~vlvyDGkvE~r~--dG~-~yra~~~~~~~~~~~~~~Pcg~cPv  274 (297)
T KOG3233|consen  210 IKEFIRNLNILNVELSLEDLETILDVLVYDGKVEKRH--DGP-RYRAFGPNIPRAGLVAGIPCGICPV  274 (297)
T ss_pred             HHHHHHHcCcccccccHHHHHHHhHHheecceeeeee--cCc-eeeecCCCCCCcCccCCCcccCCcc
Confidence            9999999999999999999999999999999999964  786 99999998877665 5599999996

>PF05158 RNA_pol_Rpc34: RNA polymerase Rpc34 subunit; InterPro: IPR007832 The family comprises a subunit specific to RNA Pol III, the tRNA specific polymerase

Probab=100.00  E-value=3.6e-47  Score=332.51  Aligned_cols=149  Identities=45%  Similarity=0.812  Sum_probs=14.8

Q ss_pred             ceeeecccccccceeEEEeeccCCCcCcccccceecccccHHHHHHHHHHHHHHHhhhhhhccC------------CCCC
Q psy521           25 GTWYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTAN------------NTNG   92 (173)
Q Consensus        25 g~~~~d~sV~~~~rk~Yml~~l~Ps~eiTGG~WYtD~elD~eFI~~L~~~~~~~l~~k~~~~~~------------~~~~   92 (173)
                      +..+..++|++++||+||||+|+||+|||||+||+|||||+|||+.|+++|++||++++.++..            ....
T Consensus       128 ~lIK~vksv~~~~rK~Yml~~l~Ps~eiTGG~wy~d~e~D~efi~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  207 (327)
T PF05158_consen  128 KLIKSVKSVKNPNRKVYMLYDLEPSEEITGGPWYTDGEFDTEFIDVLREQCLRFIQQKSFPSSEQISQKTSSSSADPQAL  207 (327)
T ss_dssp             TSEEEE--SS-SS--EEEESSS----------------------------------------------------------
T ss_pred             CCEEEecCcCCCCeEEEEEccCCcCcccCCCCcccCCcccHHHHHHHHHHHHHHHHhCcCcccccccccccccccccccc
Confidence            4567789999999999999999999999999999999999999999999999999999886432            4578


Q ss_pred             CcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeE----------------EeecC
Q psy521           93 PLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMY----------------RAVSP  156 (173)
Q Consensus        93 p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~Y----------------R~~~~  156 (173)
                      |+++++++|||++||++||+++||++++|+++||++||++|||||+||++...+|...|                |+...
T Consensus       208 ~~~~~~~~~~T~~eI~~fI~~sgIs~v~Ls~eDI~~LL~tLVyDgkIE~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (327)
T PF05158_consen  208 PYPAGYASYPTLEEIAEFINKSGISNVELSEEDIESLLDTLVYDGKIEEVRSGDGYEYYRAPGQSVLYCSKRRYYRAVGP  287 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCCCCCHHHHHHHHHHcCCCceecCHHHHHHHHHHHhhCceeEEEeccCCceeeeeecccceeeecccccccccc
Confidence            88899999999999999999999999999999999999999999999999865443333                33444


Q ss_pred             CcCCCCccccCccCCCC
Q psy521          157 YFAVTGLSTSPCGVCPD  173 (173)
Q Consensus       157 ~~~~~~~~~~PCG~CP~  173 (173)
                      ....++++++|||+||+
T Consensus       288 ~~~~~~~~~~PCg~CPV  304 (327)
T PF05158_consen  288 EPSASGLTEVPCGVCPV  304 (327)
T ss_dssp             -----------------
T ss_pred             ccCCCCccCCCCCCCCc
Confidence            55678999999999996

The C34 subunit of Saccharomyces cerevisiae RNA Pol III is part of a subcomplex of three subunits which have no counterpart in the other two nuclear RNA polymerases. This subunit interacts with TFIIIB70 and therefore participates in Pol III recruitment [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2DK8_A 2DK5_A 2YU3_A.

>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]

Probab=100.00  E-value=2.3e-40  Score=276.88  Aligned_cols=144  Identities=26%  Similarity=0.510  Sum_probs=127.4

Q ss_pred             eeecccccccceeEEEeeccCCCcCcccccceecccccHHHHHHHHHHHHHHHhhhhhhccCCCCCC---cccccCCCCC
Q psy521           27 WYQDQDFEASKKKVYMLFDLEPDRSLTGGTWYQDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGP---LVAQRLACAT  103 (173)
Q Consensus        27 ~~~d~sV~~~~rk~Yml~~l~Ps~eiTGG~WYtD~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p---~~~~~~~~~T  103 (173)
                      .++.++|++|+||+||||+++||+||||||||||||+|.|||+.|.+++++||.++.++.++...+|   +.+.+..|||
T Consensus       131 vKSvKsvKnptRKiYmLYdlvPS~eiTGGpWFtD~elDvEfi~~ll~ii~rf~~~n~fp~kn~~~gpnv~~~P~y~~ypT  210 (301)
T COG5111         131 VKSVKSVKNPTRKIYMLYDLVPSEEITGGPWFTDNELDVEFIARLLEIIERFLEKNLFPRKNFEEGPNVFYAPKYEDYPT  210 (301)
T ss_pred             HHHhhhhcCCCceEEEEecccccccccCCCccccCcccHHHHHHHHHHHHHHHHhccCCccchhcCCccccCCccCCCcc
Confidence            4557889999999999999999999999999999999999999999999999999999987766666   3456778999


Q ss_pred             HHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEeecC-CcCCCCccccCccCCCC
Q psy521          104 PKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSP-YFAVTGLSTSPCGVCPD  173 (173)
Q Consensus       104 ~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~~~-~~~~~~~~~~PCG~CP~  173 (173)
                      ++||++||+..+|.+|+|+.+++++|.++||||||+|+++  +|. .||+... ....+.+++-|||.||.
T Consensus       211 ~~~I~n~vr~~ni~~v~L~l~n~~sL~dvLvyDgKvEK~~--~g~-~yR~~~~~~~~~nq~~~ep~gn~~l  278 (301)
T COG5111         211 LEDIMNYVRNVNILSVPLRLDNLESLADVLVYDGKVEKLH--SGP-IYRYRAFKPYAKNQGEGEPAGNKAL  278 (301)
T ss_pred             HHHHHHHHHhceeeeccccHHHHHHHhHheeecCeeeeec--cCc-ceeeeecChhhhcccCCCCCCCCcc
Confidence            9999999999999999999999999999999999999986  463 5766432 23357899999999984

>PF05158 RNA_pol_Rpc34: RNA polymerase Rpc34 subunit; InterPro: IPR007832 The family comprises a subunit specific to RNA Pol III, the tRNA specific polymerase

Probab=99.22  E-value=2.5e-12  Score=113.07  Aligned_cols=34  Identities=50%  Similarity=1.057  Sum_probs=10.7

Q ss_pred             CcccCcceEEEeeccccCCCCCCceeeecccccc
Q psy521            2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA   35 (173)
Q Consensus         2 ~~~~~~~k~y~~~~~~p~~~~tgg~~~~d~sV~~   35 (173)
                      ||++++|||||||+||||+|+|||+||+|+.||.
T Consensus       135 sv~~~~rK~Yml~~l~Ps~eiTGG~wy~d~e~D~  168 (327)
T PF05158_consen  135 SVKNPNRKVYMLYDLEPSEEITGGPWYTDGEFDT  168 (327)
T ss_dssp             -SS-SS--EEEESSS-------------------
T ss_pred             CcCCCCeEEEEEccCCcCcccCCCCcccCCcccH
Confidence            7899999999999999999999999999999985

The C34 subunit of Saccharomyces cerevisiae RNA Pol III is part of a subcomplex of three subunits which have no counterpart in the other two nuclear RNA polymerases. This subunit interacts with TFIIIB70 and therefore participates in Pol III recruitment [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2DK8_A 2DK5_A 2YU3_A.

>KOG3233|consensus

Probab=99.17  E-value=9.7e-12  Score=106.86  Aligned_cols=75  Identities=37%  Similarity=0.612  Sum_probs=50.5

Q ss_pred             CcccCcceEEEeeccccCCCCCCceeeeccccccc-----ceeEEE--eeccCCCcCccccc-ceecccccHHHHHHHHH
Q psy521            2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEAS-----KKKVYM--LFDLEPDRSLTGGT-WYQDQDFEVEFVDVLNQ   73 (173)
Q Consensus         2 ~~~~~~~k~y~~~~~~p~~~~tgg~~~~d~sV~~~-----~rk~Ym--l~~l~Ps~eiTGG~-WYtD~elD~eFI~~L~~   73 (173)
                      ||++++||+||||++|||.|+|||+||+|+.|+..     +.++++  -.+.+|.++--=|| ++-..++=+      .+
T Consensus       135 sv~n~~~KvYmLy~leP~~elTGG~WytDqdlDvEfIe~L~~~c~~fl~~~~~~~~~~~~gp~~~~~~~~~t------~~  208 (297)
T KOG3233|consen  135 SVKNSRKKVYMLYDLEPDSELTGGTWYTDQDLDVEFIEVLKQICVRFLESKRFPAEKNVEGPMFVRNESYPT------VQ  208 (297)
T ss_pred             hhcCCCceEEEEecccccccccCCcccccccccHHHHHHHHHHHHHHHHhcccchhhccccchhhhhccCCC------HH
Confidence            67899999999999999999999999999999842     333333  33344544333366 222222222      25


Q ss_pred             HHHHHHhhh
Q psy521           74 QCYRFLQLK   82 (173)
Q Consensus        74 ~~~~~l~~k   82 (173)
                      .+++||.+.
T Consensus       209 ei~~~i~~l  217 (297)
T KOG3233|consen  209 EIKEFIRNL  217 (297)
T ss_pred             HHHHHHHHc
Confidence            677788874

>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]

Probab=99.14  E-value=1.7e-11  Score=103.59  Aligned_cols=34  Identities=38%  Similarity=0.930  Sum_probs=32.3

Q ss_pred             CcccCcceEEEeeccccCCCCCCceeeecccccc
Q psy521            2 SEIASKKKVYMLFDLEPDRSLTGGTWYQDQDFEA   35 (173)
Q Consensus         2 ~~~~~~~k~y~~~~~~p~~~~tgg~~~~d~sV~~   35 (173)
                      ||++++||+|||||++||.|||||+|++|+.+|.
T Consensus       136 svKnptRKiYmLYdlvPS~eiTGGpWFtD~elDv  169 (301)
T COG5111         136 SVKNPTRKIYMLYDLVPSEEITGGPWFTDNELDV  169 (301)
T ss_pred             hhcCCCceEEEEecccccccccCCCccccCcccH
Confidence            6789999999999999999999999999999984

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=95.17  E-value=0.032  Score=38.12  Aligned_cols=25  Identities=28%  Similarity=0.549  Sum_probs=21.0

Q ss_pred             eecCHHHHHHHHHHHcccCeeEEEe
Q psy521          119 VELSEEDIRTILETLLFDGKIEQIN  143 (173)
Q Consensus       119 v~Ls~~dI~~iL~~Lv~Dg~iE~~~  143 (173)
                      ..++.+.|+.+|+.|+--|+|+++.
T Consensus        24 ~~~s~~~ve~mL~~l~~kG~I~~~~   48 (69)
T PF09012_consen   24 FGISPEAVEAMLEQLIRKGYIRKVD   48 (69)
T ss_dssp             TT--HHHHHHHHHHHHCCTSCEEEE
T ss_pred             HCcCHHHHHHHHHHHHHCCcEEEec
Confidence            3579999999999999999999985

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins

Probab=94.85  E-value=0.18  Score=37.50  Aligned_cols=68  Identities=19%  Similarity=0.190  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCC
Q psy521           69 DVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT  148 (173)
Q Consensus        69 ~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~  148 (173)
                      ...|.+++++|.+..                ..+|++||.+.+++.+   ..++..=|-..|+.|+=.|.|.++...+|.
T Consensus         7 T~~R~~Il~~l~~~~----------------~~~ta~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Gli~~~~~~~~~   67 (120)
T PF01475_consen    7 TPQRLAILELLKESP----------------EHLTAEEIYDKLRKKG---PRISLATVYRTLDLLEEAGLIRKIEFGDGE   67 (120)
T ss_dssp             HHHHHHHHHHHHHHS----------------SSEEHHHHHHHHHHTT---TT--HHHHHHHHHHHHHTTSEEEEEETTSE
T ss_pred             CHHHHHHHHHHHcCC----------------CCCCHHHHHHHhhhcc---CCcCHHHHHHHHHHHHHCCeEEEEEcCCCc
Confidence            345788888998852                3589999999999766   345888999999999999999999876677


Q ss_pred             eeEEeec
Q psy521          149 DMYRAVS  155 (173)
Q Consensus       149 ~~YR~~~  155 (173)
                      ..|....
T Consensus        68 ~~Y~~~~   74 (120)
T PF01475_consen   68 SRYELST   74 (120)
T ss_dssp             EEEEESS
T ss_pred             ceEeecC
Confidence            7888765

These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....

>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators

Probab=94.23  E-value=0.38  Score=35.21  Aligned_cols=64  Identities=20%  Similarity=0.168  Sum_probs=50.6

Q ss_pred             HHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeE
Q psy521           72 NQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMY  151 (173)
Q Consensus        72 ~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~Y  151 (173)
                      |..++++|...                ...+|++||++.+++.+   -.++..-|-..|+.|+=.|.|.++...+|...|
T Consensus         3 R~~Il~~l~~~----------------~~~~sa~ei~~~l~~~~---~~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~y   63 (116)
T cd07153           3 RLAILEVLLES----------------DGHLTAEEIYERLRKKG---PSISLATVYRTLELLEEAGLVREIELGDGKARY   63 (116)
T ss_pred             HHHHHHHHHhC----------------CCCCCHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhCCCEEEEEeCCCceEE
Confidence            56677777753                13589999999999875   257889999999999999999999765665677


Q ss_pred             Eee
Q psy521          152 RAV  154 (173)
Q Consensus       152 R~~  154 (173)
                      ...
T Consensus        64 ~~~   66 (116)
T cd07153          64 ELN   66 (116)
T ss_pred             EeC
Confidence            754

Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.

>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase

Probab=93.75  E-value=0.054  Score=36.81  Aligned_cols=49  Identities=18%  Similarity=0.377  Sum_probs=35.6

Q ss_pred             CCCCHHHHHHHHHHh--CCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEe
Q psy521          100 ACATPKEVRKFITDL--GISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA  153 (173)
Q Consensus       100 ~~~T~~eI~~~I~~~--~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~  153 (173)
                      +..+++.||..++=.  +-...+.|.+++++.|+.||-||+++..   +|  .||.
T Consensus        10 gsl~l~RIh~mLkmf~~~~~~~~~s~~eL~~fL~~lv~e~~L~~~---~G--~YkL   60 (60)
T PF08672_consen   10 GSLPLDRIHSMLKMFPKDPGGYDISLEELQEFLDRLVEEGKLECS---GG--SYKL   60 (60)
T ss_dssp             -SEEHHHHHHHHHHH-GGG--TT--HHHHHHHHHHHHHTTSEE-----TT--EEEE
T ss_pred             CCCCHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHCCcEEec---CC--EEeC
Confidence            346799999999976  3334689999999999999999999985   45  4874

The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.

>PRK09462 fur ferric uptake regulator; Provisional

Probab=92.24  E-value=0.96  Score=35.03  Aligned_cols=52  Identities=15%  Similarity=0.273  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521          100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV  154 (173)
Q Consensus       100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~  154 (173)
                      ..+|++||.+.+++.+   ..++..-|-..|+.|+=.|.|.++...+|...|...
T Consensus        32 ~h~sa~eI~~~l~~~~---~~i~~aTVYR~L~~L~e~Gli~~~~~~~~~~~y~~~   83 (148)
T PRK09462         32 HHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELT   83 (148)
T ss_pred             CCCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHCCCEEEEEcCCCcEEEEeC
Confidence            3589999999999877   347889999999999999999999765676677653

>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]

Probab=89.77  E-value=2.2  Score=33.27  Aligned_cols=54  Identities=17%  Similarity=0.193  Sum_probs=44.8

Q ss_pred             CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEeecC
Q psy521          100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVSP  156 (173)
Q Consensus       100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~~~  156 (173)
                      ..+|+++|++.+++.+   ..+|..-|-..|+.|+--|.|.++...+|...|.....
T Consensus        35 ~~~sAeei~~~l~~~~---p~islaTVYr~L~~l~e~Glv~~~~~~~~~~~y~~~~~   88 (145)
T COG0735          35 GHLSAEELYEELREEG---PGISLATVYRTLKLLEEAGLVHRLEFEGGKTRYELNSE   88 (145)
T ss_pred             CCCCHHHHHHHHHHhC---CCCCHhHHHHHHHHHHHCCCEEEEEeCCCEEEEecCCC
Confidence            3499999999999965   46789999999999999999999986666666765544

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=89.41  E-value=0.62  Score=31.87  Aligned_cols=44  Identities=27%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             CCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCC-eeEEe
Q psy521          102 ATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT-DMYRA  153 (173)
Q Consensus       102 ~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~-~~YR~  153 (173)
                      +|..||++-+        .+|.-.++.+|+.|+-+|+|++.+...|. ..+|.
T Consensus        16 ~~T~eiA~~~--------gls~~~aR~yL~~Le~eG~V~~~~~~rG~~~~W~l   60 (62)
T PF04703_consen   16 LKTREIADAL--------GLSIYQARYYLEKLEKEGKVERSPVRRGKSTYWRL   60 (62)
T ss_dssp             EEHHHHHHHH--------TS-HHHHHHHHHHHHHCTSEEEES-SSSSS-EEEE
T ss_pred             CCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEEEecCCCCcceeeee
Confidence            6677777653        57888999999999999999997644454 23443

>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A)

Probab=82.84  E-value=2.2  Score=30.84  Aligned_cols=55  Identities=18%  Similarity=0.312  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEe
Q psy521           68 VDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQIN  143 (173)
Q Consensus        68 I~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~  143 (173)
                      ...+++.|+.||++...    .         .-.+++++|++-+        .++.++|+..|+.|+-+|.|-...
T Consensus        45 ~~~~~~~Vl~~i~~~~~----~---------~~Gv~v~~I~~~l--------~~~~~~v~~al~~L~~eG~IYsTi   99 (102)
T PF08784_consen   45 LSPLQDKVLNFIKQQPN----S---------EEGVHVDEIAQQL--------GMSENEVRKALDFLSNEGHIYSTI   99 (102)
T ss_dssp             S-HHHHHHHHHHHC-----------------TTTEEHHHHHHHS--------TS-HHHHHHHHHHHHHTTSEEESS
T ss_pred             CCHHHHHHHHHHHhcCC----C---------CCcccHHHHHHHh--------CcCHHHHHHHHHHHHhCCeEeccc
Confidence            56788999999998211    0         1347899998766        468999999999999999997654

RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.

>COG3682 Predicted transcriptional regulator [Transcription]

Probab=81.06  E-value=4.3  Score=31.49  Aligned_cols=50  Identities=20%  Similarity=0.239  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521          100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV  154 (173)
Q Consensus       100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~  154 (173)
                      +..|++||+++|.+-    -+++..-|..||+.|+--|.|-+.+. .+...||+.
T Consensus        19 ~~~t~~eI~~~l~~~----~ews~sTV~TLl~RL~KKg~l~~~kd-gr~~~y~pL   68 (123)
T COG3682          19 GPATVREIIEELPAD----REWSYSTVKTLLNRLVKKGLLTRKKD-GRAFRYSPL   68 (123)
T ss_pred             CCccHHHHHHHHhhc----ccccHHHHHHHHHHHHhccchhhhhc-CCeeeeecc
Confidence            458999999999985    58999999999999999999988762 334667764

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=80.75  E-value=6.8  Score=26.05  Aligned_cols=46  Identities=26%  Similarity=0.369  Sum_probs=35.8

Q ss_pred             CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEeec
Q psy521          100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAVS  155 (173)
Q Consensus       100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~~  155 (173)
                      +..|++||++.+        .++...|..+|+.|+-.|.|++...  ....|+++.
T Consensus        21 ~~~t~~eIa~~l--------~i~~~~v~~~L~~L~~~GlV~~~~~--~~~~Y~a~~   66 (68)
T PF01978_consen   21 GPATAEEIAEEL--------GISRSTVYRALKSLEEKGLVEREEG--RPKVYRAVP   66 (68)
T ss_dssp             CHEEHHHHHHHH--------TSSHHHHHHHHHHHHHTTSEEEEEE--CCEEEEEE-
T ss_pred             CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEcC--ceEEEEEeC
Confidence            347888888754        4688899999999999999999862  346788764

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 51/162 (31%)

Query: 6   SKKKVYMLFDLEPDRSLTGGTWYQDQDFEASKK--------KVYMLFDLEPDRSLTGGTW 57
            K+    +  +  +  +       + ++   +         K +   DL P        +
Sbjct: 421 PKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPKTFDSDDLIPPY--LDQYF 473

Query: 58  YQ---------DQD-----FEVEFVDVLNQQCYRFLQLK--REKTANNTNGPLVA--QRL 99
           Y          +       F + F+D      +RFL+ K   + TA N +G ++   Q+L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLD------FRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQ 141
                K  + +I D         E  +  IL+   F  KIE+
Sbjct: 528 -----KFYKPYICD----NDPKYERLVNAILD---FLPKIEE 557

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
2dk5_A	91	DNA-directed RNA polymerase III 39 kDa polypeptide	96.9
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	94.77
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	94.38
3mwm_A	139	ZUR, putative metal uptake regulation protein; FUR	93.42
2o03_A	131	Probable zinc uptake regulation protein FURB; DNA-	93.14
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	93.04
2xig_A	150	Ferric uptake regulation protein; hpfur, transcrip	92.47
1mzb_A	136	Ferric uptake regulation protein; ferric uptake re	92.29
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	92.29
2w57_A	150	Ferric uptake regulation protein; gene regulation,	91.01
3eyy_A	145	Putative iron uptake regulatory protein; NUR, nick	90.51
4ets_A	162	Ferric uptake regulation protein; metal binding pr	89.0
1ldd_A	74	APC2WHB, anaphase promoting complex; ubiquitin, li	88.49
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	87.47
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	86.46
1p6r_A	82	Penicillinase repressor; transcription regulation,	82.83
2dk8_A	81	DNA-directed RNA polymerase III 39 kDa polypeptide	82.79
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	82.03
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	80.6

>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85

Probab=96.90  E-value=0.00044  Score=49.33  Aligned_cols=27  Identities=41%  Similarity=0.465  Sum_probs=22.4

Q ss_pred             ceeeecccccccceeEEEeeccCCCcC
Q psy521           25 GTWYQDQDFEASKKKVYMLFDLEPDRS   51 (173)
Q Consensus        25 g~~~~d~sV~~~~rk~Yml~~l~Ps~e   51 (173)
                      |..+...+++.++||+||||+|+||+|
T Consensus        64 glIkr~~~~~~~~rKvy~Ly~l~Ps~e   90 (91)
T 2dk5_A           64 KLIKAVKSVAASKKKVYMLYNLSGPSS   90 (91)
T ss_dssp             TSEEEECCSSCSSCCEEEESSSCCCCC
T ss_pred             CCEEEecCCCCCCcEEEEEeccCcCCC
Confidence            455667888888999999999999986

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=94.77  E-value=0.12  Score=34.50  Aligned_cols=50  Identities=16%  Similarity=0.290  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEe
Q psy521          101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA  153 (173)
Q Consensus       101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~  153 (173)
                      .+|++||++.+++.+   ..++..=|...|+.|+-.|.|.++...+|...|+.
T Consensus        33 ~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~~   82 (83)
T 2fu4_A           33 HVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFEL   82 (83)
T ss_dssp             SBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEE
T ss_pred             CCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEeec
Confidence            489999999998865   25789999999999999999999875455566764

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=94.38  E-value=0.091  Score=36.20  Aligned_cols=41  Identities=22%  Similarity=0.265  Sum_probs=29.8

Q ss_pred             CHHHHHHHHHHhCCce-------eecCHHHHHHHHHHHcccCeeEEEe
Q psy521          103 TPKEVRKFITDLGISK-------VELSEEDIRTILETLLFDGKIEQIN  143 (173)
Q Consensus       103 T~~eI~~~I~~~~is~-------v~Ls~~dI~~iL~~Lv~Dg~iE~~~  143 (173)
                      ++++|.++|++.|..+       ...|..-|+.-|+.|+-.|+|+++.
T Consensus         3 ~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~~   50 (78)
T 1xn7_A            3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQ   50 (78)
T ss_dssp             CHHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred             hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence            4555555555544333       2468899999999999999999983

>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}

Probab=93.42  E-value=0.23  Score=37.07  Aligned_cols=67  Identities=16%  Similarity=0.256  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCe
Q psy521           70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD  149 (173)
Q Consensus        70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~  149 (173)
                      .-|..|+++|.+.                ...+|++||.+.+++.+   -.++..=|-..|+.|+-.|.|.++...+|..
T Consensus        14 ~qR~~Il~~L~~~----------------~~h~sa~eI~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~   74 (139)
T 3mwm_A           14 RQRAAVSAALQEV----------------EEFRSAQELHDMLKHKG---DAVGLTTVYRTLQSLADAGEVDVLRTAEGES   74 (139)
T ss_dssp             HHHHHHHHHHTTC----------------SSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSSEEEECTTSCE
T ss_pred             HHHHHHHHHHHhC----------------CCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCCEEEEEcCCCce
Confidence            3467778888763                23589999999999865   2578999999999999999999998667777


Q ss_pred             eEEeec
Q psy521          150 MYRAVS  155 (173)
Q Consensus       150 ~YR~~~  155 (173)
                      .|....
T Consensus        75 ~Y~~~~   80 (139)
T 3mwm_A           75 VYRRCS   80 (139)
T ss_dssp             EEECCS
T ss_pred             EEEECC
Confidence            787643

>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}

Probab=93.14  E-value=0.39  Score=35.20  Aligned_cols=65  Identities=12%  Similarity=0.218  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCe
Q psy521           70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTD  149 (173)
Q Consensus        70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~  149 (173)
                      .-|..|+.+|.+.                ...+|++||++.+++.+   -.++..=|-..|+.|+-.|.|.++...+|..
T Consensus        11 ~qR~~Il~~l~~~----------------~~~~sa~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~   71 (131)
T 2o03_A           11 RQRAAISTLLETL----------------DDFRSAQELHDELRRRG---ENIGLTTVYRTLQSMASSGLVDTLHTDTGES   71 (131)
T ss_dssp             HHHHHHHHHHHHC----------------CSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHTTTSEEEEECTTSCE
T ss_pred             HHHHHHHHHHHhC----------------CCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCEEEEEeCCCce
Confidence            4467778888753                13589999999999865   2578899999999999999999998767777


Q ss_pred             eEEe
Q psy521          150 MYRA  153 (173)
Q Consensus       150 ~YR~  153 (173)
                      .|..
T Consensus        72 ~y~~   75 (131)
T 2o03_A           72 VYRR   75 (131)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7775

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=93.04  E-value=0.17  Score=35.73  Aligned_cols=41  Identities=24%  Similarity=0.323  Sum_probs=31.7

Q ss_pred             CHHHHHHHHHHhCCce-------eecCHHHHHHHHHHHcccCeeEEEe
Q psy521          103 TPKEVRKFITDLGISK-------VELSEEDIRTILETLLFDGKIEQIN  143 (173)
Q Consensus       103 T~~eI~~~I~~~~is~-------v~Ls~~dI~~iL~~Lv~Dg~iE~~~  143 (173)
                      ++++|.++|++.|..+       ..+|..=|+..|+.|+-.|+|+++.
T Consensus         3 ~L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~   50 (87)
T 2k02_A            3 SLMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS   50 (87)
T ss_dssp             CTHHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred             hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence            5566666666666444       2478899999999999999999974

>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}

Probab=92.47  E-value=0.52  Score=35.47  Aligned_cols=52  Identities=17%  Similarity=0.188  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521          100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV  154 (173)
Q Consensus       100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~  154 (173)
                      ..+|++||++.+++.+-   .++..=|-..|+.|+-.|.|.++...+|...|...
T Consensus        41 ~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   92 (150)
T 2xig_A           41 THLSPEEITHSIRQKDK---NTSISSVYRILNFLEKENFISVLETSKSGRRYEIA   92 (150)
T ss_dssp             SCBCHHHHHHHHHHHST---TCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEES
T ss_pred             CCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence            45899999999998752   46889999999999999999999866776678753

>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42

Probab=92.29  E-value=0.52  Score=34.73  Aligned_cols=51  Identities=14%  Similarity=0.233  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521          101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV  154 (173)
Q Consensus       101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~  154 (173)
                      .+|++||.+.+++.+   -.++..=|-..|+.|+-.|.|.++...+|...|...
T Consensus        34 ~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   84 (136)
T 1mzb_A           34 HMSAEDVYKALMEAG---EDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFELA   84 (136)
T ss_dssp             SBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred             CCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence            589999999999875   257899999999999999999998765676678763

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=92.29  E-value=0.49  Score=35.29  Aligned_cols=52  Identities=15%  Similarity=0.171  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521          100 ACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV  154 (173)
Q Consensus       100 ~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~  154 (173)
                      ..+|++||.+.+++.+   -.++..=|-..|+.|+-.|.|.++...+|...|...
T Consensus        36 ~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   87 (145)
T 2fe3_A           36 AHPTADDIYKALEGKF---PNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFV   87 (145)
T ss_dssp             SCCCHHHHHHHHGGGC---TTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred             CCCCHHHHHHHHHHhC---CCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence            4589999999998865   246889999999999999999999766666678753

>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}

Probab=91.01  E-value=0.58  Score=35.22  Aligned_cols=51  Identities=18%  Similarity=0.268  Sum_probs=43.0

Q ss_pred             CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521          101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV  154 (173)
Q Consensus       101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~  154 (173)
                      .+|++||.+.+++.+   -.++..=|-..|+.|+-.|.|.++...+|...|...
T Consensus        33 h~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   83 (150)
T 2w57_A           33 HISAEELYKKLIDLG---EEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFELS   83 (150)
T ss_dssp             SEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEEC
T ss_pred             CCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence            489999999999865   257889999999999999999999755666678763

>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}

Probab=90.51  E-value=0.75  Score=34.40  Aligned_cols=51  Identities=18%  Similarity=0.179  Sum_probs=43.0

Q ss_pred             CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521          101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV  154 (173)
Q Consensus       101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~  154 (173)
                      .+|++||++.+++.+-   .++..=|-..|+.|+=.|.|.++...+|...|...
T Consensus        33 h~ta~ei~~~l~~~~~---~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~~   83 (145)
T 3eyy_A           33 HATPDDILGEVRKTAS---GINISTVYRTLELLEELGLVSHAHLGHGAPTYHLA   83 (145)
T ss_dssp             SBCHHHHHHHHHTTCT---TCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEET
T ss_pred             CCCHHHHHHHHHhhCC---CCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence            4899999999998652   46899999999999999999999766666678754

>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}

Probab=89.00  E-value=0.93  Score=34.66  Aligned_cols=52  Identities=13%  Similarity=0.098  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHh--CCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521          100 ACATPKEVRKFITDL--GISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV  154 (173)
Q Consensus       100 ~~~T~~eI~~~I~~~--~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~  154 (173)
                      ..+|++||.+.+++.  +   -.+|..=|-..|+.|+=.|.|.++...+|...|...
T Consensus        47 ~h~sA~eI~~~l~~~~~~---~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~~  100 (162)
T 4ets_A           47 THYTPESLYMEIKQAEPD---LNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELA  100 (162)
T ss_dssp             SCBCHHHHHHHHHHHCGG---GCCCHHHHHHHHHHHHHTTSEEECC-----CCEEEC
T ss_pred             CCCCHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEEeC
Confidence            469999999999986  4   246889999999999999999998655565568764

>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34

Probab=88.49  E-value=0.52  Score=32.39  Aligned_cols=50  Identities=16%  Similarity=0.312  Sum_probs=38.2

Q ss_pred             CCCCHHHHHHHHHHhCCce--e-ecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEe
Q psy521          100 ACATPKEVRKFITDLGISK--V-ELSEEDIRTILETLLFDGKIEQINNIDGTDMYRA  153 (173)
Q Consensus       100 ~~~T~~eI~~~I~~~~is~--v-~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~  153 (173)
                      +...++.||..++=.-...  . ..|.+++++.|+.||-|+++|.+.  +|  .||.
T Consensus        21 ~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~~~--gG--~YkL   73 (74)
T 1ldd_A           21 GAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKYIA--NG--SYEI   73 (74)
T ss_dssp             CSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEECCT--TT--EEEE
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEEeC--CC--EEeC
Confidence            4466999999999654322  2 258899999999999999999652  45  5886

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=87.47  E-value=1.4  Score=30.33  Aligned_cols=59  Identities=14%  Similarity=0.226  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHH-HHHHHHHHHcccCeeEEEecCCCC
Q psy521           70 VLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEE-DIRTILETLLFDGKIEQINNIDGT  148 (173)
Q Consensus        70 ~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~-dI~~iL~~Lv~Dg~iE~~~~~~g~  148 (173)
                      ..++.|+.||.++                 +..|+.+|++.+        .+|.. .|.+.|..|.-||.|++..  -|.
T Consensus        11 ~~~~~IL~~Lk~~-----------------g~~ta~eiA~~L--------git~~~aVr~hL~~Le~eGlV~~~~--~gR   63 (79)
T 1xmk_A           11 EIKEKICDYLFNV-----------------SDSSALNLAKNI--------GLTKARDINAVLIDMERQGDVYRQG--TTP   63 (79)
T ss_dssp             HHHHHHHHHHHHT-----------------CCEEHHHHHHHH--------CGGGHHHHHHHHHHHHHTTSEEEEC--SSS
T ss_pred             hHHHHHHHHHHHc-----------------CCcCHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCEEecC--CCC
Confidence            5678888888874                 347888888765        36777 9999999999999999752  455


Q ss_pred             eeEEeec
Q psy521          149 DMYRAVS  155 (173)
Q Consensus       149 ~~YR~~~  155 (173)
                      ..|+++.
T Consensus        64 P~w~LT~   70 (79)
T 1xmk_A           64 PIWHLTD   70 (79)
T ss_dssp             CEEEECH
T ss_pred             CCeEeCH
Confidence            6777654

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=86.46  E-value=3.4  Score=27.25  Aligned_cols=47  Identities=13%  Similarity=0.122  Sum_probs=34.4

Q ss_pred             CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCC-eeEEeec
Q psy521          101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT-DMYRAVS  155 (173)
Q Consensus       101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~-~~YR~~~  155 (173)
                      .+|..||++.+   |     +|..-|...|+.|+-+|.|++.....|. ..|+...
T Consensus        14 ~~s~~eLa~~l---g-----vs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~   61 (81)
T 2htj_A           14 GGKTAEIAEAL---A-----VTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKG   61 (81)
T ss_dssp             CCCHHHHHHHH---T-----SCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESS
T ss_pred             CCCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEECh
Confidence            37899998875   3     5778899999999999999976433343 3455543

>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B

Probab=82.83  E-value=5.1  Score=26.23  Aligned_cols=49  Identities=20%  Similarity=0.255  Sum_probs=38.6

Q ss_pred             CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521          101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV  154 (173)
Q Consensus       101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~  154 (173)
                      .+|+.||++.+...    ..++..-|..+|+.|+-.|.|++... .....|+++
T Consensus        23 ~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~~~   71 (82)
T 1p6r_A           23 SINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYTPN   71 (82)
T ss_dssp             SEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEES
T ss_pred             CCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEEee
Confidence            47999999999863    24788999999999999999999863 223556654

>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85

Probab=82.79  E-value=4.5  Score=28.08  Aligned_cols=64  Identities=9%  Similarity=0.121  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCC
Q psy521           69 DVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT  148 (173)
Q Consensus        69 ~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~  148 (173)
                      ..+...++.+++++                ...+|=+++..-+       -.++.++....|+.|.=.|+|+-.... |.
T Consensus        13 ~~ie~~IL~l~~~~----------------P~GItd~~L~~~~-------p~~~~~~r~~aIN~LL~~gkiel~K~~-~~   68 (81)
T 2dk8_A           13 VEIENRIIELCHQF----------------PHGITDQVIQNEM-------PHIEAQQRAVAINRLLSMGQLDLLRSN-TG   68 (81)
T ss_dssp             HHHHHHHHHHHHHC----------------SSCEEHHHHHHHC-------TTSCHHHHHHHHHHHHHHTSEEEEECS-SS
T ss_pred             HHHHHHHHHHHHhC----------------CCCCCHHHHHHHC-------CCCCHHHHHHHHHHHHHcCCeEEEecC-Ce
Confidence            34445577777664                2346667755544       257899999999999999999977653 66


Q ss_pred             eeEEeecC
Q psy521          149 DMYRAVSP  156 (173)
Q Consensus       149 ~~YR~~~~  156 (173)
                      ..||+..+
T Consensus        69 liYr~k~~   76 (81)
T 2dk8_A           69 LLYRIKDS   76 (81)
T ss_dssp             EEEEECCC
T ss_pred             EEEEeccc
Confidence            89998875

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=82.03  E-value=6.5  Score=26.81  Aligned_cols=64  Identities=16%  Similarity=0.254  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCC
Q psy521           69 DVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGT  148 (173)
Q Consensus        69 ~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~  148 (173)
                      +.+.+.++.+|.+...              ....|+.||++-+.        ++...|++.|..|.-+|+|+.+....  
T Consensus         9 ~~~~~~IL~~L~~~~p--------------g~~~t~~eLA~~Lg--------vsr~tV~~~L~~Le~~G~I~~~g~~~--   64 (81)
T 1qbj_A            9 QDQEQRILKFLEELGE--------------GKATTAHDLSGKLG--------TPKKEINRVLYSLAKKGKLQKEAGTP--   64 (81)
T ss_dssp             HHHHHHHHHHHHHHCT--------------TCCBCHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEESSSS--
T ss_pred             hHHHHHHHHHHHHcCC--------------CCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEecCCCC--
Confidence            4556778888886410              12478999997764        56678999999999999999874211  


Q ss_pred             eeEEeecC
Q psy521          149 DMYRAVSP  156 (173)
Q Consensus       149 ~~YR~~~~  156 (173)
                      -.|++..+
T Consensus        65 ~~W~i~~~   72 (81)
T 1qbj_A           65 PLWKIAVS   72 (81)
T ss_dssp             CEEEEC--
T ss_pred             CeeEEeCc
Confidence            24665543

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=80.60  E-value=6.3  Score=31.04  Aligned_cols=75  Identities=13%  Similarity=0.194  Sum_probs=53.1

Q ss_pred             cce-ecccccHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccCCCCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHc
Q psy521           56 TWY-QDQDFEVEFVDVLNQQCYRFLQLKREKTANNTNGPLVAQRLACATPKEVRKFITDLGISKVELSEEDIRTILETLL  134 (173)
Q Consensus        56 ~WY-tD~elD~eFI~~L~~~~~~~l~~k~~~~~~~~~~p~~~~~~~~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv  134 (173)
                      .|| .++-+  ..++.|+..|++-+-++.....+          .+-.+.++|..-++-+|..  .++.+|+|.||-.|+
T Consensus       107 ~~f~~~~~~--lll~rlr~~v~r~l~rkv~~~~~----------~~rI~l~~i~~~l~~~~~~--~~~~~evE~ila~lI  172 (203)
T 3t5x_A          107 AFFIRCGIF--LILEKLKIITYRNLFKKVYLLLK----------THQLSLDAFLVALKFMQVE--DVDIDEVQCILANLI  172 (203)
T ss_dssp             HHHHHHTCH--HHHHTHHHHHHHHHHHHHHHHHC----------CSEEEHHHHHHHHHHTTCT--TCCHHHHHHHHHHHH
T ss_pred             HHHHHCChH--HHHHHHHHHHHHHHHHHHHHhcC----------CCcccHHHHHHHHHhcCCC--CCCHHHHHHHHHHHH
Confidence            455 34444  35788888888877665432110          1236799999999876632  359999999999999


Q ss_pred             ccCeeEEEec
Q psy521          135 FDGKIEQINN  144 (173)
Q Consensus       135 ~Dg~iE~~~~  144 (173)
                      +||+|+-..+
T Consensus       173 ~~G~Ikg~I~  182 (203)
T 3t5x_A          173 YMGHVKGYIS  182 (203)
T ss_dssp             HHTSSCEEEE
T ss_pred             HcCceEEEEc
Confidence            9999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d2dk5a1	78	DNA-directed RNA polymerase III subunit RPC6, RPO3	96.13
d1mzba_	134	Ferric uptake regulation protein, FUR {Pseudomonas	89.1
d1ldda_	74	Anaphase promoting complex (APC) {Baker's yeast (S	84.01

>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: RPO3F domain-like
domain: DNA-directed RNA polymerase III subunit RPC6, RPO3F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.001  Score=44.98  Aligned_cols=22  Identities=45%  Similarity=0.572  Sum_probs=17.9

Q ss_pred             ceeeecccccccceeEEEeecc
Q psy521           25 GTWYQDQDFEASKKKVYMLFDL   46 (173)
Q Consensus        25 g~~~~d~sV~~~~rk~Yml~~l   46 (173)
                      +..+..++|++++||+||||+|
T Consensus        57 ~lIK~VksV~~~~rK~YmL~~L   78 (78)
T d2dk5a1          57 KLIKAVKSVAASKKKVYMLYNL   78 (78)
T ss_dssp             TSEEEECCSSCSSCCEEEESSS
T ss_pred             CCceeecccCCCCeEEEEeccC
Confidence            4467788888999999999886

>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: FUR-like
domain: Ferric uptake regulation protein, FUR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.10  E-value=0.6  Score=32.49  Aligned_cols=49  Identities=14%  Similarity=0.245  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHhCCceeecCHHHHHHHHHHHcccCeeEEEecCCCCeeEE
Q psy521          101 CATPKEVRKFITDLGISKVELSEEDIRTILETLLFDGKIEQINNIDGTDMYR  152 (173)
Q Consensus       101 ~~T~~eI~~~I~~~~is~v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR  152 (173)
                      .+|++||++.+++.+.   .++..=|-..|+.|+-.|.|.++...+|...|-
T Consensus        32 h~sa~ei~~~l~~~~~---~i~~aTVYR~L~~l~e~gli~~~~~~~~~~~y~   80 (134)
T d1mzba_          32 HMSAEDVYKALMEAGE---DVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFE   80 (134)
T ss_dssp             SBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEE
T ss_pred             CCCHHHHHHHHHHhCC---CccHHHHHHHHHHHHhccEEEEEeecCCceEEE
Confidence            5899999999999773   468889999999999999999997666654443

>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: SCF ubiquitin ligase complex WHB domain
domain: Anaphase promoting complex (APC)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.01  E-value=1.1  Score=29.12  Aligned_cols=51  Identities=18%  Similarity=0.288  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHhCC--ce-eecCHHHHHHHHHHHcccCeeEEEecCCCCeeEEee
Q psy521          100 ACATPKEVRKFITDLGI--SK-VELSEEDIRTILETLLFDGKIEQINNIDGTDMYRAV  154 (173)
Q Consensus       100 ~~~T~~eI~~~I~~~~i--s~-v~Ls~~dI~~iL~~Lv~Dg~iE~~~~~~g~~~YR~~  154 (173)
                      +...++.||..++=.-.  .. .+.|.++++..|+.+|-+++++-+.  +|  .||.+
T Consensus        21 ~slpleRIh~mLkmfv~~~~~~~~~t~~eL~~FL~~~V~e~kL~~v~--gG--~YkLv   74 (74)
T d1ldda_          21 GAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKYIA--NG--SYEIV   74 (74)
T ss_dssp             CSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEECCT--TT--EEEEC
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHhcCceEEec--CC--EEeeC
Confidence            44679999999995421  23 3679999999999999999999763  45  58864