Diaphorina citri psyllid: psy5318


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
MLGSTQLAIPDWLSSKRTRRTLSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLNMATFGNLASALLG
ccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHccccEEccccccccccccCECccccccccccCCcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
*************************VGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLN*************KIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL*********************************
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MLGSTQLAIPDWLSSKRTRRTLSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLNMATFGNLASALLG

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
E3 ubiquitin-protein ligase RNF115 Acts as an E2-dependent E3 ubiquitin-protein ligase. May be involved in endocytic trafficking.confidentQ9D0C1
E3 ubiquitin-protein ligase RNF115 Acts as an E2-dependent E3 ubiquitin-protein ligase. May be involved in endocytic trafficking.confidentQ9Y4L5

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0004842 [MF]ubiquitin-protein ligase activityprobableGO:0019787, GO:0016879, GO:0016881, GO:0003824, GO:0003674, GO:0016874
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0006511 [BP]ubiquitin-dependent protein catabolic processprobableGO:0051603, GO:1901575, GO:0044265, GO:0044260, GO:0044267, GO:0019538, GO:0009056, GO:0009987, GO:0019941, GO:0044237, GO:0043170, GO:0044248, GO:0071704, GO:0008150, GO:0030163, GO:0008152, GO:0044257, GO:0006508, GO:0043632, GO:0044238, GO:0009057
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0005634 [CC]nucleusprobableGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226
GO:0051865 [BP]protein autoubiquitinationprobableGO:0071704, GO:0044267, GO:0044238, GO:0044260, GO:0032446, GO:0019538, GO:0009987, GO:0070647, GO:0006464, GO:0043170, GO:0016567, GO:0043412, GO:0036211, GO:0008150, GO:0044237, GO:0008152

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2L0B, chain A
Confidence level:very confident
Coverage over the Query: 69-145
View the alignment between query and template
View the model in PyMOL
Template: 4AYC, chain B
Confidence level:probable
Coverage over the Query: 54-143
View the alignment between query and template
View the model in PyMOL