Psyllid ID: psy5318

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MLGSTQLAIPDWLSSKRTRRTLSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLNMATFGNLASALLG
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHccccEEccccccccccccEEEccccccccccEEcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHcccccEEccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHccccEEEEHHHcccccccccccccccccccccccccccccccccEHHHHHHccccccEccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mlgstqlaipdwlsskrtrrtLSASVgvslanpefapllphfegnpgdyawgrEGLDAIVTQLLNqmdgsgppplstdkikqipvAHITKaqidsnlqcsvcweqFTLDEAvrklpcdhfyhtpciepwlqlhgtcpicrqtlhsesaeslgpagaggpgglnmaTFGNLASALLG
Flexible Loop (DISEMBL)
mlgstqlaipdwlsskrtrRTLSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLNMATFGNLASALLG
Low Complexity Region (SEG)
MLGSTQLAIPDWLSSKRTRRTLSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHsesaeslgpagaggpgglNMATFGNLASALLG
Disordered region (IsUnstruct)
*************************VGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLN**************IKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL*********************************
Disordered Region (DISOPRED)
******************************************EGNPGDYAWGREGLDAIVT*****************KIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICR************************************
Disordered Region (DISEMBL)
MLGSTQLAIPDWLSSKRTRRTLSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLNMATFGNLASALLG
Disordered Region (DISPRO)
*********PDWLSSKRTRRTLSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL*********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGSTQLAIPDWLSSKRTRRTLSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLNMATFGNLASALLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q9Y4L5	304	E3 ubiquitin-protein liga	yes	N/A	0.590	0.342	0.557	9e-34
Q9D0C1	305	E3 ubiquitin-protein liga	yes	N/A	0.590	0.340	0.548	1e-33
Q6DIP3	311	RING finger protein 126 O	no	N/A	0.659	0.372	0.487	1e-31
Q6IRP0	312	RING finger protein 126-B	N/A	N/A	0.659	0.371	0.487	3e-31
Q7T0Q3	312	RING finger protein 126-A	N/A	N/A	0.659	0.371	0.479	6e-31
Q91YL2	313	RING finger protein 126 O	no	N/A	0.653	0.367	0.474	3e-29
Q0II22	313	RING finger protein 126 O	no	N/A	0.642	0.361	0.477	5e-29
Q9BV68	326	RING finger protein 126 O	no	N/A	0.659	0.355	0.456	1e-28
Q9C1X4	513	Uncharacterized RING fing	yes	N/A	0.619	0.212	0.427	1e-23
P0CH30	338	E3 ubiquitin-protein liga	N/A	N/A	0.590	0.307	0.383	4e-17

>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2

 Score =  142 bits (359), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 81/104 (77%)

Query: 45  NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
           NPGDYAWG+ GLDAIVTQLL Q++ +GPPP   +KI  +P   +T+ Q+D  L+C VC E
Sbjct: 174 NPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKE 233

Query: 105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148
            +T++E VR+LPC+HF+H+ CI PWL+LH TCP+CR++L+ E +
Sbjct: 234 DYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDS 277

Acts as an E2-dependent E3 ubiquitin-protein ligase. May be involved in endocytic trafficking.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 82/104 (78%)

Query: 45  NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
           NPGDYAWG+ GLDAIVTQLL Q++ +GPPP   +KI  +P   +T+ Q+++ L+C VC E
Sbjct: 175 NPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVNTGLECPVCKE 234

Query: 105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148
            +T++E VR+LPC+HF+H+ CI PWL+LH TCP+CR++L+ E +
Sbjct: 235 DYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDS 278

Acts as an E2-dependent E3 ubiquitin-protein ligase. May be involved in endocytic trafficking.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 81/123 (65%), Gaps = 7/123 (5%)

Query: 45  NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
           NP DYAWG  GLD I+TQLLNQ + +GPPP  T+KI+ +P   IT+  + S L+C VC E
Sbjct: 173 NPMDYAWGANGLDTIITQLLNQFENTGPPPADTEKIQALPTIQITEEHVGSGLECPVCKE 232

Query: 105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLNM 164
            +T+ E+VR+LPC+H +H  CI PWL+ H TCP+CR++L  ++        A  P GL  
Sbjct: 233 DYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNT-------ATNPPGLTE 285

Query: 165 ATF 167
            TF
Sbjct: 286 MTF 288

Xenopus tropicalis (taxid: 8364)

>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1

 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 80/123 (65%), Gaps = 7/123 (5%)

Query: 45  NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
           NP DYAWG  GLD I+TQLLNQ + +GPPP  TDKI+ +P   IT+  +   L+C VC E
Sbjct: 174 NPMDYAWGANGLDTIITQLLNQFENTGPPPADTDKIQALPTIQITEEHVGFGLECPVCKE 233

Query: 105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLNM 164
            +T+ E+VR+LPC+H +H  CI PWL+ H TCP+CR++L  ++        A  P GL  
Sbjct: 234 DYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNT-------ATNPPGLTD 286

Query: 165 ATF 167
            TF
Sbjct: 287 MTF 289

Xenopus laevis (taxid: 8355)

>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1

 Score =  133 bits (334), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 7/123 (5%)

Query: 45  NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
           NP DYAWG  GLD I+TQLLNQ + +GPPP   +KI+ +P   IT+  + S L+C VC E
Sbjct: 174 NPMDYAWGANGLDTIITQLLNQFENTGPPPADNEKIQALPTIQITEEHVGSGLECPVCKE 233

Query: 105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLNM 164
            +T+ E VR+LPC+H +H  CI PWL+ H TCP+CR++L  ++        A  P GL+ 
Sbjct: 234 DYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNT-------ATNPPGLSE 286

Query: 165 ATF 167
            TF
Sbjct: 287 MTF 289

Xenopus laevis (taxid: 8355)

>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 78/116 (67%), Gaps = 1/116 (0%)

Query: 45  NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
           NP DYAWG  GLD I+TQLLNQ + +GPPP   +KI+ +P   +T+  + S L+C VC E
Sbjct: 177 NPMDYAWGANGLDTIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKE 236

Query: 105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGGPG 160
            + L E+VR+LPC+H +H  CI PWL+ H +CP+CR++L  ++  +  P G  G G
Sbjct: 237 DYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT-ATNPPGLTGVG 291

Mus musculus (taxid: 10090)

>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1

 Score =  127 bits (318), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 77/113 (68%)

Query: 45  NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
           NP DYAWG  GLDAI+TQLLNQ + +GPPP   +KI+ +P   +T+  + S L+C VC +
Sbjct: 178 NPMDYAWGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKD 237

Query: 105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAG 157
            + L E VR+LPC+H +H  CI PWL+ H +CP+CR++L  ++  +  P  AG
Sbjct: 238 DYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATDPPGLAG 290

Bos taurus (taxid: 9913)

>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 76/116 (65%)

Query: 42  FEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSV 101
              NP DYAWG  GLDAI+TQLLNQ + +GPPP   +KI+ +P   +T+  + S L+C V
Sbjct: 172 LHSNPMDYAWGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPV 231

Query: 102 CWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAG 157
           C + + L E VR+LPC+H +H  CI PWL+ H +CP+CR++L  ++  +  P   G
Sbjct: 232 CKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLTG 287

Homo sapiens (taxid: 9606)

>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP32A8.03c PE=4 SV=1

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 69/110 (62%), Gaps = 1/110 (0%)

Query: 41  HFEGNPGDYAWGREGLDAIVTQLLNQMDG-SGPPPLSTDKIKQIPVAHITKAQIDSNLQC 99
           +  GNPGDYAWG  GLD I++QL+ Q  G + P P   D I ++ V    K  ID   +C
Sbjct: 337 NLSGNPGDYAWGARGLDDIISQLMEQAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEGEC 396

Query: 100 SVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAE 149
           ++C E F +++ V +LPC H++H  CI+PWL+++GTC ICR  +   S +
Sbjct: 397 TICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQ 446

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 3/107 (2%)

Query: 45  NPGDYAWGREGLDAIVTQLL-NQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNL-QCSVC 102
           N GDY  G  GL+ ++ QL  N  +  G PP S   I+ +P+ +ITK+ ++S   QC+VC
Sbjct: 169 NIGDYFIG-PGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVC 227

Query: 103 WEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAE 149
            + F      +++PC H YH  C+ PWL+LH +CP+CR  L ++  +
Sbjct: 228 MDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPD 274

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Promotes polyubiquitination of target proteins.

Gossypium hirsutum (taxid: 3635)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
332028754	335	RING finger protein 126-B [Acromyrmex ec	0.880	0.462	0.547	7e-43
322795670	316	hypothetical protein SINV_04512 [Solenop	0.880	0.490	0.541	1e-41
321468766	431	hypothetical protein DAPPUDRAFT_304341 [	0.607	0.248	0.682	3e-41
242006631	346	RING finger protein, putative [Pediculus	0.630	0.320	0.687	3e-41
91091942	295	PREDICTED: similar to CG11982 CG11982-PA	0.693	0.413	0.617	4e-41
307199729	324	RING finger protein 126 [Harpegnathos sa	0.659	0.358	0.628	5e-41
307190127	340	RING finger protein 115 [Camponotus flor	0.607	0.314	0.672	5e-40
125778114	362	GA11309 [Drosophila pseudoobscura pseudo	0.613	0.298	0.611	2e-39
195444120	362	GK11676 [Drosophila willistoni] gi|19416	0.636	0.309	0.612	4e-39
194744576	376	GF16575 [Drosophila ananassae] gi|190627	0.619	0.289	0.614	6e-39

>gi|332028754|gb|EGI68785.1| RING finger protein 126-B [Acromyrmex echinatior]

 Score =  178 bits (452), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 86/157 (54%), Positives = 103/157 (65%), Gaps = 2/157 (1%)

Query: 9   IPDWLSSKRTRRTLSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLNQMD 68
           I D++ +     +LS SVG       F   L  F GNPGDY WGR+GLDAIVTQLLNQMD
Sbjct: 147 IQDFIFNLSGAASLSNSVGQDAQPSVFNVRL--FLGNPGDYVWGRDGLDAIVTQLLNQMD 204

Query: 69  GSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEP 128
           G+GPPPLS ++I +IP   IT++Q+D  LQCSVCWE F L E VR+LPC H YH PCI P
Sbjct: 205 GTGPPPLSRNQIDEIPTTTITQSQVDCKLQCSVCWEDFKLSEPVRQLPCQHVYHAPCIVP 264

Query: 129 WLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLNMA 165
           WL+LHGTCPICRQ L  ++        A    G  +A
Sbjct: 265 WLELHGTCPICRQNLGDQNQAEANQDAAANIAGSTLA 301

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795670|gb|EFZ18349.1| hypothetical protein SINV_04512 [Solenopsis invicta]

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/157 (54%), Positives = 102/157 (64%), Gaps = 2/157 (1%)

Query: 9   IPDWLSSKRTRRTLSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLNQMD 68
           I D++ +     +LS SVG       F   L  F GNPGDY WGR+GLDAIVTQLLNQMD
Sbjct: 152 IQDFIFNLSGAASLSNSVGQDAQPSVFNVRL--FLGNPGDYVWGRDGLDAIVTQLLNQMD 209

Query: 69  GSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEP 128
           G+GPPPLS ++I +IP   I ++Q+D  LQCSVCWE F L E VR+LPC H YH PCI P
Sbjct: 210 GTGPPPLSRNQIDEIPTTTIMQSQVDCKLQCSVCWEDFKLSEPVRQLPCQHVYHAPCIVP 269

Query: 129 WLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLNMA 165
           WL+LHGTCPICRQ L  ++        A    G  +A
Sbjct: 270 WLELHGTCPICRQNLGDQNQAEANQDTAANIAGSALA 306

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321468766|gb|EFX79749.1| hypothetical protein DAPPUDRAFT_304341 [Daphnia pulex]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 88/107 (82%)

Query: 44  GNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCW 103
           GNPGDYA+GR GLDAI+TQLLNQMDG+GPPP++ DKI QIP   I + Q++ NLQCSVCW
Sbjct: 171 GNPGDYAFGRAGLDAIITQLLNQMDGTGPPPMAKDKISQIPTVAIDQQQVEQNLQCSVCW 230

Query: 104 EQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAES 150
           E F L E VRKL C+H+YHT CI PWLQLHGTCPICR+ L+ +S ++
Sbjct: 231 EDFKLAEPVRKLVCEHYYHTQCIVPWLQLHGTCPICRKALNDDSVDA 277

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006631|ref|XP_002424152.1| RING finger protein, putative [Pediculus humanus corporis] gi|212507477|gb|EEB11414.1| RING finger protein, putative [Pediculus humanus corporis]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/112 (68%), Positives = 89/112 (79%), Gaps = 1/112 (0%)

Query: 39  LPHFEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQ 98
           L  F GNP DYAWGREGLD IV+QLLN MD SGPPPL+ +KIK+IPV  I + Q+DS LQ
Sbjct: 172 LRFFLGNPADYAWGREGLDTIVSQLLNHMDVSGPPPLNEEKIKEIPVTEIGQEQVDSKLQ 231

Query: 99  CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS-ESAE 149
           CSVCWE F + E+VRKL C+HFYH  CI PWL+LHGTCPICR++L S E AE
Sbjct: 232 CSVCWEDFKIGESVRKLECEHFYHESCIVPWLELHGTCPICRKSLLSDEEAE 283

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091942|ref|XP_975905.1| PREDICTED: similar to CG11982 CG11982-PA isoform 2 [Tribolium castaneum]

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 93/128 (72%), Gaps = 6/128 (4%)

Query: 42  FEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSV 101
           F GNPGDYAWGREGLDAIVTQLLNQMD +GPPP+S + I  +PV ++   Q+D+ LQCSV
Sbjct: 139 FLGNPGDYAWGREGLDAIVTQLLNQMDSTGPPPVSKEVIDALPVINVKSDQVDAKLQCSV 198

Query: 102 CWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL------HSESAESLGPAG 155
           CWE F L E VR+LPC H YH PCI PWL+LHGTCPICRQ L      +S+S +  G + 
Sbjct: 199 CWEDFQLGENVRQLPCTHIYHEPCIRPWLELHGTCPICRQNLVNDEQSNSDSNQDSGGSS 258

Query: 156 AGGPGGLN 163
            GG   LN
Sbjct: 259 TGGQDTLN 266

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199729|gb|EFN80208.1| RING finger protein 126 [Harpegnathos saltator]

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 94/121 (77%), Gaps = 5/121 (4%)

Query: 42  FEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSV 101
           F GNPGDY WGR+GLDAIVTQLLNQMDG+GPPPL   +I +IP   I+++Q+DS LQCSV
Sbjct: 173 FLGNPGDYVWGRDGLDAIVTQLLNQMDGTGPPPLPRKQIDEIPTTTISQSQVDSKLQCSV 232

Query: 102 CWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA-----ESLGPAGA 156
           CWE F L E VR+LPC H YH PCI PWL+LHGTCPICRQ+L  +++     +++GP+ A
Sbjct: 233 CWEDFKLSEPVRQLPCQHVYHAPCIVPWLELHGTCPICRQSLGDQNSTEANQDTVGPSLA 292

Query: 157 G 157
            
Sbjct: 293 A 293

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190127|gb|EFN74281.1| RING finger protein 115 [Camponotus floridanus]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 86/107 (80%)

Query: 42  FEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSV 101
           F GNPGDY WGR+GLDAIVTQLLNQMDG+GPPPL   +I +IP   I+++Q+D  LQCSV
Sbjct: 183 FLGNPGDYVWGRDGLDAIVTQLLNQMDGTGPPPLPHKQIDEIPTTAISQSQVDCKLQCSV 242

Query: 102 CWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148
           CWE F L E VR+LPC H YH PCI PWL+LHGTCPICRQ+L  +++
Sbjct: 243 CWEDFKLSEPVRQLPCQHVYHAPCIIPWLELHGTCPICRQSLGDQNS 289

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125778114|ref|XP_001359837.1| GA11309 [Drosophila pseudoobscura pseudoobscura] gi|195157482|ref|XP_002019625.1| GL12113 [Drosophila persimilis] gi|54639587|gb|EAL28989.1| GA11309 [Drosophila pseudoobscura pseudoobscura] gi|194116216|gb|EDW38259.1| GL12113 [Drosophila persimilis]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 86/108 (79%)

Query: 42  FEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSV 101
           F GNPGDYAWGREGLD IVTQ+LNQM+ SGPPPLS+++I +IP   IT  +++  +QCS+
Sbjct: 185 FMGNPGDYAWGREGLDTIVTQMLNQMETSGPPPLSSNRINEIPNVQITSEEVEKKIQCSI 244

Query: 102 CWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAE 149
           CW+ F +DE VRKLPC H YH  CI PWL LH TCPICR++L +++++
Sbjct: 245 CWDDFKIDETVRKLPCSHLYHENCIVPWLNLHSTCPICRKSLANDASD 292

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195444120|ref|XP_002069723.1| GK11676 [Drosophila willistoni] gi|194165808|gb|EDW80709.1| GK11676 [Drosophila willistoni]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 87/116 (75%), Gaps = 4/116 (3%)

Query: 42  FEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSV 101
           F GNPGDYAWGREGLD IVTQ+LNQM+ SGPPPLS  +I++IP   I++ ++D  +QCS+
Sbjct: 183 FMGNPGDYAWGREGLDTIVTQMLNQMETSGPPPLSAQRIQEIPNVQISRDEVDKKMQCSI 242

Query: 102 CWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAG 157
           CW+ F LDE VRKLPC H YH  CI PWL LH TCPICR++L    A + G  G+G
Sbjct: 243 CWDDFKLDETVRKLPCSHLYHENCIVPWLNLHSTCPICRKSL----ANADGSDGSG 294

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194744576|ref|XP_001954769.1| GF16575 [Drosophila ananassae] gi|190627806|gb|EDV43330.1| GF16575 [Drosophila ananassae]

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 67/109 (61%), Positives = 84/109 (77%)

Query: 42  FEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSV 101
           F GNPGDYAWGREGLD IVTQ+LNQM+ SGPPPLS+ +I +IP   IT  +++  +QCS+
Sbjct: 191 FMGNPGDYAWGREGLDTIVTQMLNQMETSGPPPLSSQRINEIPNVQITAEEVERKIQCSI 250

Query: 102 CWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAES 150
           CW+ F LDE VRKLPC H YH  CI PWL LH TCPICR++L  + +++
Sbjct: 251 CWDDFKLDETVRKLPCSHLYHENCIVPWLNLHSTCPICRKSLADDGSDA 299

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
FB|FBgn0037653	380	CG11982 [Drosophila melanogast	0.579	0.268	0.637	4.9e-37
UNIPROTKB|E2QY59	319	RNF115 "Uncharacterized protei	0.568	0.313	0.57	2.5e-33
UNIPROTKB|Q9Y4L5	304	RNF115 "E3 ubiquitin-protein l	0.568	0.328	0.57	2.5e-33
MGI|MGI:1915095	305	Rnf115 "ring finger protein 11	0.568	0.327	0.56	5.2e-33
UNIPROTKB|F1SDD6	231	F1SDD6 "Uncharacterized protei	0.562	0.428	0.575	6.7e-33
UNIPROTKB|I3LDQ5	293	LOC100739432 "Uncharacterized	0.562	0.337	0.575	6.7e-33
UNIPROTKB|F6RQU6	293	RNF115 "Uncharacterized protei	0.568	0.341	0.55	1.4e-32
ZFIN|ZDB-GENE-061215-82	310	rnf115 "ring finger protein 11	0.687	0.390	0.495	2.9e-32
ZFIN|ZDB-GENE-060503-608	301	si:ch211-81a5.1 "si:ch211-81a5	0.642	0.375	0.504	8.8e-31
ZFIN|ZDB-GENE-070209-292	309	rnf126 "ring finger protein 12	0.562	0.320	0.535	1e-29

FB|FBgn0037653 CG11982 [Drosophila melanogaster (taxid:7227)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 65/102 (63%), Positives = 78/102 (76%)

Query:    42 FEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSV 101
             F GNPGDYAWGREGLD IVTQ+LNQM+ SGPPPLS  +I +IP   I   +++  +QCS+
Sbjct:   196 FMGNPGDYAWGREGLDTIVTQMLNQMETSGPPPLSAQRINEIPNVQINAEEVNRKIQCSI 255

Query:   102 CWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
             CW+ F +DE VRKLPC H YH  CI PWL LH TCPICR++L
Sbjct:   256 CWDDFKIDETVRKLPCSHLYHENCIVPWLNLHSTCPICRKSL 297

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2QY59 RNF115 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 57/100 (57%), Positives = 79/100 (79%)

Query:    45 NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
             NPGDYAWG+ GLDAIVTQLL Q++ +GPPP   +KI  +P   +T+ Q+D  L+C VC E
Sbjct:   190 NPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKE 249

Query:   105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144
              +T++E VR+LPC+HF+H+ CI PWL+LH TCP+CR++L+
Sbjct:   250 DYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLN 289

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9Y4L5 RNF115 "E3 ubiquitin-protein ligase RNF115" [Homo sapiens (taxid:9606)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 57/100 (57%), Positives = 79/100 (79%)

Query:    45 NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
             NPGDYAWG+ GLDAIVTQLL Q++ +GPPP   +KI  +P   +T+ Q+D  L+C VC E
Sbjct:   174 NPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKE 233

Query:   105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144
              +T++E VR+LPC+HF+H+ CI PWL+LH TCP+CR++L+
Sbjct:   234 DYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLN 273

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

MGI|MGI:1915095 Rnf115 "ring finger protein 115" [Mus musculus (taxid:10090)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 56/100 (56%), Positives = 80/100 (80%)

Query:    45 NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
             NPGDYAWG+ GLDAIVTQLL Q++ +GPPP   +KI  +P   +T+ Q+++ L+C VC E
Sbjct:   175 NPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVNTGLECPVCKE 234

Query:   105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144
              +T++E VR+LPC+HF+H+ CI PWL+LH TCP+CR++L+
Sbjct:   235 DYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLN 274

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=ISO

UNIPROTKB|F1SDD6 F1SDD6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 57/99 (57%), Positives = 77/99 (77%)

Query:    45 NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
             NPGDYAWG+ GLDAIVTQLL Q++ +GPPP   +KI  +P   IT+ Q+D  L+C VC E
Sbjct:   101 NPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTITQEQVDKGLECPVCKE 160

Query:   105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
              +T++E VR+LPC+HF+H+ CI PWL+LH  CP+CR++L
Sbjct:   161 DYTVEEEVRQLPCNHFFHSSCIVPWLELHDACPVCRKSL 199

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|I3LDQ5 LOC100739432 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 57/99 (57%), Positives = 77/99 (77%)

Query:    45 NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
             NPGDYAWG+ GLDAIVTQLL Q++ +GPPP   +KI  +P   IT+ Q+D  L+C VC E
Sbjct:   163 NPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTITQEQVDKGLECPVCKE 222

Query:   105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
              +T++E VR+LPC+HF+H+ CI PWL+LH  CP+CR++L
Sbjct:   223 DYTVEEEVRQLPCNHFFHSSCIVPWLELHDACPVCRKSL 261

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F6RQU6 RNF115 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 55/100 (55%), Positives = 78/100 (78%)

Query:    45 NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
             NPGDYAWG+ GLDAIVTQLL Q++ +GPPP   +KI  +P   +T+ Q+D  L+C VC E
Sbjct:   163 NPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDKGLECPVCKE 222

Query:   105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144
              +T++E VR+LPC+H++H+ CI PWL+LH  CP+CR++L+
Sbjct:   223 DYTVEEEVRQLPCNHYFHSSCIVPWLELHDACPVCRKSLN 262

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-061215-82 rnf115 "ring finger protein 115" [Danio rerio (taxid:7955)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 61/123 (49%), Positives = 85/123 (69%)

Query:    22 LSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIK 81
             L A+ GV  + P     + H   NPGDYAWG+ GLDA++TQLL Q + +GPPP   +KI 
Sbjct:   163 LFANSGVPGSPPVSWTSMLH--SNPGDYAWGQGGLDAVITQLLGQFENTGPPPAEKEKIS 220

Query:    82 QIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
              +P   IT+   D N++C VC E +T+ E VR+LPC+HF+H+ CI PWL+LH TCP+CR+
Sbjct:   221 SLPTVIITQEHTDCNMECPVCKEDYTVGEPVRQLPCNHFFHSDCIVPWLELHDTCPVCRK 280

Query:   142 TLH 144
             +L+
Sbjct:   281 SLN 283

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-060503-608 si:ch211-81a5.1 "si:ch211-81a5.1" [Danio rerio (taxid:7955)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 57/113 (50%), Positives = 77/113 (68%)

Query:    31 ANPEFAPLLPHFEGNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITK 90
             A P+ +        NPGDYAWG+ GLDA+VTQLL Q + SGPPP   + I  +P   I+ 
Sbjct:   157 AGPQTSSWSSALHSNPGDYAWGQGGLDAVVTQLLGQSENSGPPPAEKEMISSLPTVSISS 216

Query:    91 AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
              Q    L+C VC E+F++ E+VR+LPC H++H+ CI PWLQLH TCP+CR++L
Sbjct:   217 EQAACRLECPVCREEFSVGESVRQLPCLHYFHSSCIVPWLQLHDTCPVCRKSL 269

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-070209-292 rnf126 "ring finger protein 126" [Danio rerio (taxid:7955)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 53/99 (53%), Positives = 70/99 (70%)

Query:    45 NPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWE 104
             NP DYAWG  GLDAI+TQLLNQ + +GPPP   DKIK +P   I +  + + L+C VC E
Sbjct:   172 NPMDYAWGANGLDAIITQLLNQFENTGPPPADKDKIKSLPTVQIKQEHVGAGLECPVCKE 231

Query:   105 QFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
              ++  E VR+LPC+H +H  CI PWL+ H TCP+CR++L
Sbjct:   232 DYSAGENVRQLPCNHLFHNDCIVPWLEQHDTCPVCRKSL 270

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D0C1	RN115_MOUSE	6, ., 3, ., 2, ., -	0.5480	0.5909	0.3409	yes	N/A
Q9Y4L5	RN115_HUMAN	6, ., 3, ., 2, ., -	0.5576	0.5909	0.3421	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	176
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	6e-17
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	7e-12
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	5e-11
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	2e-09
smart00184	40	smart00184, RING, Ring finger	6e-08
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	1e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	2e-06
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	3e-05
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	4e-05
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	4e-05
smart00504	63	smart00504, Ubox, Modified RING finger domain	7e-04
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	0.001
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	0.002
TIGR00599	397	TIGR00599, rad18, DNA repair protein rad18	0.002

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 70.1 bits (172), Expect = 6e-17
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 98  QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
           +C +C ++F   E V  LPC H +H  C++ WL+   TCP+CR 
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRA 45

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 57.1 bits (138), Expect = 7e-12
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 98  QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL-QLHGTCPICRQTL 143
           +C +C E+F   E V  LPC H +   CI+ WL     TCP+CR  +
Sbjct: 1   ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 59.6 bits (144), Expect = 5e-11
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 74  PLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH 133
           P +T K    P++     + D  ++C++C   F  ++ +R LPCDH +H  C++ WL  +
Sbjct: 301 PTTTTKGSLKPLSIERAVEADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY 360

Query: 134 G-TCPICRQTL 143
              CP+CR  +
Sbjct: 361 SNKCPVCRTAI 371

Length = 374

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 50.6 bits (121), Expect = 2e-09
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 95  SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
             L+C +C +     + V   PC H +   CI  +L+    CPICR 
Sbjct: 1   EELECPICLDLLR--DPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 46.7 bits (111), Expect = 6e-08
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 99  CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPIC 139
           C +C E++   +    LPC H +   CI  WL+    TCPIC
Sbjct: 1   CPICLEEY--LKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 11/43 (25%)

Query: 98  QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICR 140
            C V W             C H +H  CI  WL+   TCP+CR
Sbjct: 42  DCPVVW-----------GECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 10/55 (18%)

Query: 99  CSVCWEQF----------TLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
           C++C ++            LD   ++LPC H  H  C++ WL+   TCPICR+ +
Sbjct: 290 CTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344

Length = 491

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 99  CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPIC 139
           C +C E     + V  LPC H + + CI  WL+  + TCP+C
Sbjct: 1   CPICLE--EPKDPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 11/53 (20%)

Query: 90  KAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQT 142
           +  +    +C V W             C+H +H  CI  WL   G CP+ RQT
Sbjct: 38  QFGMTPGDECPVVWGV-----------CNHAFHDHCIYRWLDTKGVCPLDRQT 79

Length = 88

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 10/57 (17%)

Query: 92   QIDSNLQCSVCWEQFTLDEAVRKLP------CDHFYHTPCIEPWLQLHG--TCPICR 140
            +   + +C++C+    LD   R LP      C + +HT C+  W        CP+CR
Sbjct: 1465 KFSGHEECAICY--SVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCR 1519

Length = 1525

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 36.1 bits (84), Expect = 7e-04
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 125 CIEPWLQLHGTCPICRQTLHSES 147
            IE WL  HGT P+  Q L  E 
Sbjct: 27  AIEKWLLSHGTDPVTGQPLTHED 49

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 98  QCSVCWEQFTLDEAVRK-----LP-CDHFYHTPCIEPWLQLHGTCPICRQTLHS 145
           +C++C E+   D+ ++      L  C+H +   CI+ W +   TCP+CR    S
Sbjct: 176 ECAICMEK-VYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS 228

Length = 238

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 14/48 (29%)

Query: 98  QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ---LHGTCPICRQT 142
            C + W +           C H +H  CI  WL      G CP+CRQT
Sbjct: 44  DCPLVWGK-----------CKHNFHMHCILKWLATETSKGLCPMCRQT 80

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 91  AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQT 142
             +D++L+C +C + F   +      C H + + CI   L     CP+CR  
Sbjct: 21  YPLDTSLRCHICKDFF---DVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAE 69

All proteins in this family for which functions are known are involved in nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 397

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG4628|consensus	348		99.69
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.6
PHA02929	238	N1R/p28-like protein; Provisional	99.38
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.34
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.34
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.23
KOG0317|consensus	293		99.22
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.18
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.16
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.1
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.08
KOG0823|consensus	230		99.06
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.04
KOG0320|consensus	187		99.03
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.01
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.01
PF14634	44	zf-RING_5: zinc-RING finger domain	98.96
PHA02926	242	zinc finger-like protein; Provisional	98.93
KOG0802|consensus	543		98.92
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.88
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.87
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.87
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.81
KOG1734|consensus	328		98.62
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.59
KOG0287|consensus	442		98.59
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.54
KOG1493|consensus	84		98.53
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.53
KOG2164|consensus	513		98.53
KOG2930|consensus	114		98.52
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.49
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.48
KOG0828|consensus	636		98.44
KOG0804|consensus	493		98.36
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.36
KOG2177|consensus	386		98.29
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.28
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.23
KOG0311|consensus	381		98.05
KOG4265|consensus	349		98.04
KOG0824|consensus	324		97.98
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.98
KOG4445|consensus	368		97.9
KOG0827|consensus	465		97.89
KOG1039|consensus	344		97.81
KOG0978|consensus	698		97.8
KOG0825|consensus	1134		97.72
KOG4172|consensus	62		97.72
KOG1785|consensus	563		97.67
KOG4159|consensus	398		97.64
KOG1645|consensus	463		97.62
KOG0297|consensus	391		97.49
KOG1941|consensus	518		97.47
KOG3039|consensus	303		97.38
KOG2660|consensus	331		97.33
COG5152	259	Uncharacterized conserved protein, contains RING a	97.28
KOG2879|consensus	298		97.24
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.24
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	97.2
KOG1813|consensus	313		97.17
KOG1428|consensus	3738		97.08
PF04641	260	Rtf2: Rtf2 RING-finger	97.04
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.87
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	96.85
COG5222	427	Uncharacterized conserved protein, contains RING Z	96.83
KOG4692|consensus	489		96.8
KOG3970|consensus	299		96.79
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.74
PHA02825	162	LAP/PHD finger-like protein; Provisional	96.74
PHA02862	156	5L protein; Provisional	96.69
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.64
KOG1952|consensus	950		96.59
KOG4275|consensus	350		96.54
KOG1002|consensus	791		96.4
KOG4739|consensus	233		96.39
KOG1814|consensus	445		96.38
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.34
PHA03096	284	p28-like protein; Provisional	96.24
KOG1571|consensus	355		96.2
KOG4185|consensus	296		96.19
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	95.99
KOG0801|consensus	205		95.97
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.92
KOG3268|consensus	234		95.91
KOG0826|consensus	357		95.72
KOG0827|consensus	465		95.49
KOG1940|consensus	276		95.41
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	95.12
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	95.01
KOG2114|consensus	933		94.99
KOG2932|consensus	389		94.88
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	94.85
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	94.59
KOG3002|consensus	299		94.52
KOG1001|consensus	674		94.5
KOG3053|consensus	293		93.72
KOG2034|consensus	911		93.62
KOG0298|consensus	1394		93.34
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	93.33
KOG2817|consensus	394		92.13
KOG1812|consensus	384		91.66
KOG4367|consensus	699		91.16
KOG3800|consensus	300		91.07
KOG0309|consensus	1081		90.98
KOG3161|consensus	861		90.54
KOG1100|consensus	207		90.26
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	90.22
KOG4718|consensus	235		89.14
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	89.0
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	87.9
KOG1609|consensus	323		87.64
KOG3113|consensus	293		87.08
KOG0802|consensus	543		86.5
KOG3899|consensus	381		86.43
KOG1829|consensus	580		86.27
KOG4362|consensus	684		85.35
PF06906	57	DUF1272: Protein of unknown function (DUF1272); In	85.32
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	83.79
KOG2068|consensus	327		83.36
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	81.06
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	80.61
KOG1812|consensus	384		80.57
smart00132	39	LIM Zinc-binding domain present in Lin-11, Isl-1,	80.49

>KOG4628|consensus

Probab=99.69  E-value=3.3e-17  Score=135.62  Aligned_cols=79  Identities=30%  Similarity=0.781  Sum_probs=66.1

Q ss_pred             CCCCCCHHHHhcCCcccccccccCC-CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC-CCccccccccCCCc
Q psy5318          71 GPPPLSTDKIKQIPVAHITKAQIDS-NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSESA  148 (176)
Q Consensus        71 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~l~~~~~  148 (176)
                      ....+.++.+.+++...+.....+. ...|+||+|+|+.+++++.|||+|.||..||.+||..++ .||+||+.+.....
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~  282 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG  282 (348)
T ss_pred             hhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence            4457788899999988887765432 248999999999999999999999999999999997775 59999998876654


Q ss_pred             c
Q psy5318         149 E  149 (176)
Q Consensus       149 ~  149 (176)
                      .
T Consensus       283 ~  283 (348)
T KOG4628|consen  283 S  283 (348)
T ss_pred             C
Confidence            3

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.60  E-value=2.5e-16  Score=94.02  Aligned_cols=43  Identities=47%  Similarity=1.234  Sum_probs=40.2

Q ss_pred             cCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccc
Q psy5318          98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICR  140 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR  140 (176)
                      +|+||++.+..++.++.++|+|.||..||.+|++.+.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            5999999999889999999999999999999999999999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.38  E-value=8.5e-13  Score=104.97  Aligned_cols=69  Identities=25%  Similarity=0.563  Sum_probs=52.1

Q ss_pred             CHHHHhcCCcccccccc---cCCCccCccccccccCCCc-----eEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318          76 STDKIKQIPVAHITKAQ---IDSNLQCSVCWEQFTLDEA-----VRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        76 ~~~~~~~l~~~~~~~~~---~~~~~~C~IC~~~~~~~~~-----~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      .++.+..+|.....-+.   ...+.+|+||++.+..++.     .+..+|+|.||..||.+|++.+.+||+||.++.
T Consensus       151 ~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        151 YKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             hHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            66677777766544322   2346789999998765431     234469999999999999999999999999875

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=5.3e-13  Score=107.75  Aligned_cols=51  Identities=33%  Similarity=1.040  Sum_probs=46.5

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHh-cCCCCccccccccC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHS  145 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~  145 (176)
                      ..-+|.||++.|...+.++++||+|.||..|+.+|+. .+..||+||.++++
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            3467999999999999999999999999999999997 77799999999875

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.34  E-value=7.1e-13  Score=87.44  Aligned_cols=45  Identities=36%  Similarity=0.928  Sum_probs=35.4

Q ss_pred             CccCccccccccCC----------CceEEecCCCcCCHHhHHHHHhcCCCCcccc
Q psy5318          96 NLQCSVCWEQFTLD----------EAVRKLPCDHFYHTPCIEPWLQLHGTCPICR  140 (176)
Q Consensus        96 ~~~C~IC~~~~~~~----------~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR  140 (176)
                      +..|+||++.+...          -.+...+|+|.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            34599999998322          2345557999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=7.7e-12  Score=103.54  Aligned_cols=52  Identities=35%  Similarity=0.947  Sum_probs=43.9

Q ss_pred             CCCccCccccccc-cCC---------CceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318          94 DSNLQCSVCWEQF-TLD---------EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        94 ~~~~~C~IC~~~~-~~~---------~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      .++..|.||++++ ..+         .+..++||||.+|.+|++.|++++++||+||.++.-
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if  346 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF  346 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence            4677899999994 333         246789999999999999999999999999999543

>KOG0317|consensus

Probab=99.22  E-value=7.2e-12  Score=100.67  Aligned_cols=52  Identities=27%  Similarity=0.758  Sum_probs=45.5

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      .+....|.+|++...++   ..+||||+||..||..|...+..||+||.++.+..
T Consensus       236 ~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             CCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence            34567899999998776   78999999999999999999999999999987654

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.18  E-value=1.7e-11  Score=94.17  Aligned_cols=52  Identities=23%  Similarity=0.731  Sum_probs=42.7

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc----------------CCCCccccccccCCCc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL----------------HGTCPICRQTLHSESA  148 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~----------------~~~CP~CR~~l~~~~~  148 (176)
                      .++.+|+||++.+.++   ++++|||.||..||..|+..                ...||+||..+...+.
T Consensus        16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L   83 (193)
T PLN03208         16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL   83 (193)
T ss_pred             CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence            4567799999998766   77899999999999999842                2479999999976554

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.16  E-value=1.6e-11  Score=75.02  Aligned_cols=46  Identities=37%  Similarity=0.884  Sum_probs=38.8

Q ss_pred             CccCccccccccCCCceEEecCCCc-CCHHhHHHHHhcCCCCcccccccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      +..|.||++....   +..+||||. ||..|+..|++....||+||+++.
T Consensus         2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4569999998654   588899999 999999999999999999999875

...

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.10  E-value=4.4e-11  Score=69.32  Aligned_cols=39  Identities=33%  Similarity=0.957  Sum_probs=32.8

Q ss_pred             CccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccc
Q psy5318          99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPIC  139 (176)
Q Consensus        99 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~C  139 (176)
                      |+||++.+.+  .++.++|||.||..|+.+|++.+..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8999998874  45678899999999999999888899998

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.08  E-value=1.1e-10  Score=68.61  Aligned_cols=44  Identities=43%  Similarity=1.179  Sum_probs=35.9

Q ss_pred             cCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccc
Q psy5318          98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTL  143 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l  143 (176)
                      .|+||++.+.  +.+...+|+|.||..|+..|++. ...||.||..+
T Consensus         1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            4999999983  33444559999999999999987 67899999764

>KOG0823|consensus

Probab=99.06  E-value=7.1e-11  Score=92.39  Aligned_cols=52  Identities=23%  Similarity=0.712  Sum_probs=43.5

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC---CCccccccccCCCc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSESA  148 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~l~~~~~  148 (176)
                      .....|.||++.-+++   +++.|||.||..||.+||..+.   .||+|+..+..++.
T Consensus        45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v   99 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV   99 (230)
T ss_pred             CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence            3456799999998776   7788999999999999996543   69999999877765

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.04  E-value=1.1e-10  Score=68.85  Aligned_cols=38  Identities=32%  Similarity=0.884  Sum_probs=30.1

Q ss_pred             CccccccccCCCceEEecCCCcCCHHhHHHHHhcCC----CCccc
Q psy5318          99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG----TCPIC  139 (176)
Q Consensus        99 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~C  139 (176)
                      |+||++.|.++   +.++|||.||..||..|++...    .||.|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999887   8899999999999999986542    59987

>KOG0320|consensus

Probab=99.03  E-value=9.8e-11  Score=88.17  Aligned_cols=53  Identities=21%  Similarity=0.664  Sum_probs=43.3

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      +....|+|||+.+..... +-+.|||+||..||+..++....||+||+.+..+.
T Consensus       129 ~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~  181 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ  181 (187)
T ss_pred             ccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence            345779999999874421 33679999999999999999999999999886653

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.01  E-value=2.6e-10  Score=76.48  Aligned_cols=52  Identities=31%  Similarity=0.749  Sum_probs=38.8

Q ss_pred             CCccCccccccccC--------C-C-ceEEecCCCcCCHHhHHHHHhc---CCCCccccccccCC
Q psy5318          95 SNLQCSVCWEQFTL--------D-E-AVRKLPCDHFYHTPCIEPWLQL---HGTCPICRQTLHSE  146 (176)
Q Consensus        95 ~~~~C~IC~~~~~~--------~-~-~~~~lpC~H~Fh~~Ci~~wl~~---~~~CP~CR~~l~~~  146 (176)
                      .+..|.||...|..        + + .++.-.|+|.||..||.+|+..   +..||+||++...+
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k   84 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK   84 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence            46779999988852        1 2 2333349999999999999975   45899999987543

>smart00504 Ubox Modified RING finger domain

Probab=99.01  E-value=3.5e-10  Score=71.99  Aligned_cols=48  Identities=33%  Similarity=0.564  Sum_probs=42.3

Q ss_pred             ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      ..|+||.+.+.++   +.++|||+|+..||..|++.+.+||+|+.++..++
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~   49 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED   49 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence            4699999999876   77899999999999999988889999999885544

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.96  E-value=4.8e-10  Score=66.68  Aligned_cols=44  Identities=27%  Similarity=0.842  Sum_probs=37.8

Q ss_pred             cCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318          98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ  141 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~  141 (176)
                      .|+||++.|.......+++|||+||..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            39999999955567788899999999999998756668999985

>PHA02926 zinc finger-like protein; Provisional

Probab=98.93  E-value=5.1e-10  Score=87.26  Aligned_cols=53  Identities=26%  Similarity=0.778  Sum_probs=38.7

Q ss_pred             CCCccCccccccccCC----C-ceEEe-cCCCcCCHHhHHHHHhcC------CCCccccccccCC
Q psy5318          94 DSNLQCSVCWEQFTLD----E-AVRKL-PCDHFYHTPCIEPWLQLH------GTCPICRQTLHSE  146 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~----~-~~~~l-pC~H~Fh~~Ci~~wl~~~------~~CP~CR~~l~~~  146 (176)
                      ..+.+|+||++..-..    + ...+| +|+|.||..||..|.+.+      .+||+||..+..-
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I  232 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI  232 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence            4567899999976321    1 12334 599999999999998643      3599999987543

>KOG0802|consensus

Probab=98.92  E-value=4.5e-10  Score=99.62  Aligned_cols=53  Identities=32%  Similarity=0.866  Sum_probs=45.3

Q ss_pred             CCCccCccccccccCCCc--eEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          94 DSNLQCSVCWEQFTLDEA--VRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~--~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      ..+..|+||++.+..+..  ..+++|+|+||..|+..|+++.++||.||..+-..
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~  343 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDY  343 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence            347789999999987544  68899999999999999999999999999955433

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.88  E-value=1.4e-09  Score=71.35  Aligned_cols=49  Identities=33%  Similarity=0.688  Sum_probs=36.5

Q ss_pred             CccccccccCCCce-EEec-CCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          99 CSVCWEQFTLDEAV-RKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        99 C~IC~~~~~~~~~~-~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      |+-|.....+++.. +.-. |+|.||.+||.+||..++.||++|++.....
T Consensus        34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~   84 (88)
T COG5194          34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD   84 (88)
T ss_pred             CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence            55554444444433 3333 9999999999999999999999999886554

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.87  E-value=9.4e-10  Score=64.21  Aligned_cols=39  Identities=38%  Similarity=1.018  Sum_probs=33.1

Q ss_pred             CccccccccCCCceEEecCCCcCCHHhHHHHHh--cCCCCccc
Q psy5318          99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ--LHGTCPIC  139 (176)
Q Consensus        99 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~--~~~~CP~C  139 (176)
                      |+||++.+...  ...++|+|.||..|+.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            79999998755  24788999999999999998  45579987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.87  E-value=1.6e-09  Score=92.03  Aligned_cols=52  Identities=27%  Similarity=0.705  Sum_probs=44.6

Q ss_pred             ccCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        92 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      ..+....|+||++.|..+   ++++|+|.||..||..|+.....||+||..+...
T Consensus        22 ~Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             ccccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            345667899999999766   6789999999999999998888999999987654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00184 RING Ring finger

Probab=98.81  E-value=3.6e-09  Score=59.87  Aligned_cols=38  Identities=42%  Similarity=1.128  Sum_probs=32.0

Q ss_pred             CccccccccCCCceEEecCCCcCCHHhHHHHHh-cCCCCccc
Q psy5318          99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPIC  139 (176)
Q Consensus        99 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~C  139 (176)
                      |+||++..   .....++|+|.||..|+..|++ ....||+|
T Consensus         1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            78998884   3447889999999999999997 56679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG1734|consensus

Probab=98.62  E-value=7.3e-09  Score=82.75  Aligned_cols=54  Identities=31%  Similarity=0.762  Sum_probs=44.0

Q ss_pred             CCccCccccccccCCC-------ceEEecCCCcCCHHhHHHHH--hcCCCCccccccccCCCc
Q psy5318          95 SNLQCSVCWEQFTLDE-------AVRKLPCDHFYHTPCIEPWL--QLHGTCPICRQTLHSESA  148 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~-------~~~~lpC~H~Fh~~Ci~~wl--~~~~~CP~CR~~l~~~~~  148 (176)
                      ++..|.||-..+....       ....|.|+|+||..||+-|-  -++++||.|+++++.+.-
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rm  285 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRM  285 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhh
Confidence            4567999988775443       67889999999999999995  577899999998876543

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=2.3e-08  Score=79.73  Aligned_cols=51  Identities=24%  Similarity=0.702  Sum_probs=41.9

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHH-HHhcCCC-CccccccccCCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEP-WLQLHGT-CPICRQTLHSES  147 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~-wl~~~~~-CP~CR~~l~~~~  147 (176)
                      ..+..|.||++.....   ..++|||+||..||.. |-+.+.. ||+||+.+..+.
T Consensus       213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            3477899999987665   7889999999999999 8666554 999999886553

>KOG0287|consensus

Probab=98.59  E-value=1.2e-08  Score=84.00  Aligned_cols=52  Identities=31%  Similarity=0.786  Sum_probs=45.5

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA  148 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~  148 (176)
                      +.-+.|.||.+.|..+   .++||+|.||.-||..+|..+..||.|+.++.....
T Consensus        21 D~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L   72 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL   72 (442)
T ss_pred             HHHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence            3456799999999887   889999999999999999999999999998765443

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.54  E-value=3.7e-08  Score=64.82  Aligned_cols=51  Identities=31%  Similarity=0.524  Sum_probs=39.9

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccccCCCc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSESA  148 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~~~  148 (176)
                      +...|+|+.+.+.++   +++++||.|.+.||..|++. ..+||+|+..+...+.
T Consensus         3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l   54 (73)
T PF04564_consen    3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL   54 (73)
T ss_dssp             GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred             cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence            346799999999887   88999999999999999988 7899999998876544

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG1493|consensus

Probab=98.53  E-value=1.3e-08  Score=66.37  Aligned_cols=51  Identities=35%  Similarity=0.817  Sum_probs=37.3

Q ss_pred             CCccCccccccccC---------CCceEEec-CCCcCCHHhHHHHHhc---CCCCccccccccC
Q psy5318          95 SNLQCSVCWEQFTL---------DEAVRKLP-CDHFYHTPCIEPWLQL---HGTCPICRQTLHS  145 (176)
Q Consensus        95 ~~~~C~IC~~~~~~---------~~~~~~lp-C~H~Fh~~Ci~~wl~~---~~~CP~CR~~l~~  145 (176)
                      .+.+|.||.-.|..         ++...++. |.|.||..||.+|+..   +..||+||+...-
T Consensus        19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~   82 (84)
T KOG1493|consen   19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF   82 (84)
T ss_pred             CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence            34479999887742         23334444 9999999999999954   3469999998653

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.53  E-value=5.1e-08  Score=57.56  Aligned_cols=34  Identities=29%  Similarity=0.779  Sum_probs=21.4

Q ss_pred             CccccccccCCC-ceEEecCCCcCCHHhHHHHHhcC
Q psy5318          99 CSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQLH  133 (176)
Q Consensus        99 C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~  133 (176)
                      |+||.+ |...+ ..++|+|||+|+.+|+.++++..
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence            899999 75533 56889999999999999998743

>KOG2164|consensus

Probab=98.53  E-value=4.4e-08  Score=84.44  Aligned_cols=49  Identities=31%  Similarity=0.837  Sum_probs=40.0

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC-----CCCccccccccCCC
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH-----GTCPICRQTLHSES  147 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-----~~CP~CR~~l~~~~  147 (176)
                      +..|+||++.....   ..+.|||+||..||..++...     ..||+||..+..++
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd  239 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD  239 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence            67799999987655   666799999999999987543     37999999887743

>KOG2930|consensus

Probab=98.52  E-value=3.7e-08  Score=67.83  Aligned_cols=30  Identities=30%  Similarity=0.844  Sum_probs=27.5

Q ss_pred             CCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318         117 CDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus       117 C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      |+|.||..||.+||+.+..||+|.++....
T Consensus        81 CNHaFH~hCisrWlktr~vCPLdn~eW~~q  110 (114)
T KOG2930|consen   81 CNHAFHFHCISRWLKTRNVCPLDNKEWVFQ  110 (114)
T ss_pred             cchHHHHHHHHHHHhhcCcCCCcCcceeEe
Confidence            999999999999999999999999876543

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.49  E-value=9.6e-08  Score=58.04  Aligned_cols=42  Identities=29%  Similarity=0.808  Sum_probs=32.7

Q ss_pred             cCccccccccCCCceEEecCC-----CcCCHHhHHHHHhcC--CCCcccc
Q psy5318          98 QCSVCWEQFTLDEAVRKLPCD-----HFYHTPCIEPWLQLH--GTCPICR  140 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~--~~CP~CR  140 (176)
                      .|.||++ ...++...+.||.     |.+|..|+.+|+..+  .+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3899998 3444555678975     899999999999554  4899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.48  E-value=5.5e-08  Score=78.62  Aligned_cols=48  Identities=29%  Similarity=0.695  Sum_probs=42.9

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      +..+.|-||-+.+..+   ..++|||.||.-||..+|..+.-||+||.+..
T Consensus        23 Ds~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          23 DSMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             hhHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHH
Confidence            4456799999999877   78899999999999999999999999998754

>KOG0828|consensus

Probab=98.44  E-value=6.4e-08  Score=83.04  Aligned_cols=51  Identities=27%  Similarity=0.796  Sum_probs=39.7

Q ss_pred             CCccCccccccccCCC--------------ceEEecCCCcCCHHhHHHHHh-cCCCCccccccccC
Q psy5318          95 SNLQCSVCWEQFTLDE--------------AVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHS  145 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~--------------~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~  145 (176)
                      ....|+||+..+....              ....+||.|+||..|+..|+. .+-.||+||.+++.
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            3456999999764211              234569999999999999998 55599999999864

>KOG0804|consensus

Probab=98.36  E-value=2.1e-07  Score=79.06  Aligned_cols=50  Identities=26%  Similarity=0.804  Sum_probs=40.0

Q ss_pred             cCCCccCccccccccCCC-ceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318          93 IDSNLQCSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      ..+.++|+||++.+.... .++...|.|.||..|+..|  ...+||+||.-..
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence            356788999999987553 3344569999999999999  5568999998665

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.36  E-value=3.1e-07  Score=75.48  Aligned_cols=52  Identities=19%  Similarity=0.507  Sum_probs=37.6

Q ss_pred             CccCcccccc-ccCCC-ceEEecCCCcCCHHhHHHHHh-cCCCCccccccccCCC
Q psy5318          96 NLQCSVCWEQ-FTLDE-AVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSES  147 (176)
Q Consensus        96 ~~~C~IC~~~-~~~~~-~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~~~  147 (176)
                      +..||+|... +..++ ...+.+|||.||..|+...+. ....||.|+..+....
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            4569999985 33332 223337999999999999764 4458999999886654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2177|consensus

Probab=98.29  E-value=2.4e-07  Score=74.38  Aligned_cols=45  Identities=31%  Similarity=0.790  Sum_probs=39.3

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccc
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICR  140 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR  140 (176)
                      ..+...|+||++.|..+   ..++|+|.||..|+..++.....||.||
T Consensus        10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence            34567799999999977   8899999999999999988445899999

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.28  E-value=1.4e-07  Score=61.55  Aligned_cols=49  Identities=24%  Similarity=0.680  Sum_probs=23.1

Q ss_pred             ccCcccccccc-CCCc-eEEe---cCCCcCCHHhHHHHHhc---C--------CCCccccccccC
Q psy5318          97 LQCSVCWEQFT-LDEA-VRKL---PCDHFYHTPCIEPWLQL---H--------GTCPICRQTLHS  145 (176)
Q Consensus        97 ~~C~IC~~~~~-~~~~-~~~l---pC~H~Fh~~Ci~~wl~~---~--------~~CP~CR~~l~~  145 (176)
                      ..|.||+..+. .++. ..+.   .|++.||..|+..||..   .        +.||.|+.++.-
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            45999999875 3322 2222   39999999999999842   1        159999998753

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.23  E-value=2.9e-07  Score=84.29  Aligned_cols=52  Identities=21%  Similarity=0.827  Sum_probs=38.2

Q ss_pred             cCCCccCccccccccCCC---ceEEec-CCCcCCHHhHHHHHhcC--CCCcccccccc
Q psy5318          93 IDSNLQCSVCWEQFTLDE---AVRKLP-CDHFYHTPCIEPWLQLH--GTCPICRQTLH  144 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~---~~~~lp-C~H~Fh~~Ci~~wl~~~--~~CP~CR~~l~  144 (176)
                      ...-.+|+||+..+..-+   .-.+.+ |+|.||..|+.+|++..  ++||+||.+++
T Consensus      1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            445667999998765111   123344 99999999999999754  47999998764

>KOG0311|consensus

Probab=98.05  E-value=4.6e-07  Score=75.04  Aligned_cols=54  Identities=26%  Similarity=0.557  Sum_probs=43.3

Q ss_pred             ccCCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhc-CCCCccccccccCCCc
Q psy5318          92 QIDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQL-HGTCPICRQTLHSESA  148 (176)
Q Consensus        92 ~~~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~~~  148 (176)
                      .+..+..|+||++.++..   +..+ |.|.||..||..-++. .++||.||+.+..+-.
T Consensus        39 ~~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs   94 (381)
T KOG0311|consen   39 MFDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS   94 (381)
T ss_pred             HhhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence            345667799999998765   5555 9999999999888854 5589999999876643

>KOG4265|consensus

Probab=98.04  E-value=2.9e-06  Score=70.48  Aligned_cols=49  Identities=29%  Similarity=0.676  Sum_probs=41.1

Q ss_pred             CCCccCccccccccCCCceEEecCCC-cCCHHhHHHHHhcCCCCccccccccC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDH-FYHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      +...+|.||+.+-.+.   .+|||.| -.|..|.+...-.++.||+||+++..
T Consensus       288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            3467799999987665   8999999 68999999876678899999998854

>KOG0824|consensus

Probab=97.98  E-value=2.8e-06  Score=69.14  Aligned_cols=48  Identities=25%  Similarity=0.538  Sum_probs=39.1

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccccCC
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSE  146 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~  146 (176)
                      ..+|.||+....-+   +.++|+|.||.-||+--.+. ..+|++||.+++..
T Consensus         7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            45699999876555   78899999999999887654 44699999998765

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.98  E-value=1.3e-06  Score=55.37  Aligned_cols=48  Identities=25%  Similarity=0.715  Sum_probs=23.9

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      ...|++|.+.+..+  +....|.|+||..||..-+.  ..||+|+.+.-.++
T Consensus         7 lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD   54 (65)
T PF14835_consen    7 LLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD   54 (65)
T ss_dssp             TTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred             hcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence            45699999998755  33445999999999987543  35999998765444

>KOG4445|consensus

Probab=97.90  E-value=1e-05  Score=65.90  Aligned_cols=53  Identities=32%  Similarity=0.782  Sum_probs=42.9

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-----------------------CCCCccccccccCCC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-----------------------HGTCPICRQTLHSES  147 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-----------------------~~~CP~CR~~l~~~~  147 (176)
                      ..-.|.||+-.|..++...+++|.|+||..|+.++|..                       .-.||+||..+..+.
T Consensus       114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~  189 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE  189 (368)
T ss_pred             CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence            34559999999999988899999999999999776421                       115999999997654

>KOG0827|consensus

Probab=97.89  E-value=4.8e-06  Score=69.86  Aligned_cols=47  Identities=30%  Similarity=0.873  Sum_probs=35.0

Q ss_pred             ccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcC---CCCccccccc
Q psy5318          97 LQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH---GTCPICRQTL  143 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~---~~CP~CR~~l  143 (176)
                      ..|.||-+.+.....+.-+. |||+||..|+..|+..-   ..||.||-.+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~   55 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL   55 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence            45999955554444555555 99999999999999653   4799999443

>KOG1039|consensus

Probab=97.81  E-value=7.6e-06  Score=68.59  Aligned_cols=53  Identities=28%  Similarity=0.703  Sum_probs=38.4

Q ss_pred             CCCccCccccccccCCC----ceEEec-CCCcCCHHhHHHHH--hc-----CCCCccccccccCC
Q psy5318          94 DSNLQCSVCWEQFTLDE----AVRKLP-CDHFYHTPCIEPWL--QL-----HGTCPICRQTLHSE  146 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~----~~~~lp-C~H~Fh~~Ci~~wl--~~-----~~~CP~CR~~l~~~  146 (176)
                      ..+.+|.||++......    ....+| |.|.||..||..|-  +.     ...||.||.....-
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v  223 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV  223 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence            34678999999865432    122345 99999999999997  33     45799999865433

>KOG0978|consensus

Probab=97.80  E-value=4.7e-06  Score=75.08  Aligned_cols=50  Identities=22%  Similarity=0.602  Sum_probs=40.1

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHh-cCCCCccccccccCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSE  146 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~~  146 (176)
                      .....|++|-..+++.   +...|+|+||..|+.+.+. +...||.|...+..-
T Consensus       641 K~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan  691 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN  691 (698)
T ss_pred             HhceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence            4567899999777654   5556999999999999985 566899999987543

>KOG0825|consensus

Probab=97.72  E-value=5.9e-06  Score=74.60  Aligned_cols=50  Identities=20%  Similarity=0.490  Sum_probs=39.5

Q ss_pred             ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      ..|++|+..+.+.......+|+|+||..|+..|-+...+||+||..+...
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v  173 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEV  173 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhee
Confidence            34777777666554445567999999999999999999999999987544

>KOG4172|consensus

Probab=97.72  E-value=5.5e-06  Score=50.71  Aligned_cols=45  Identities=31%  Similarity=0.721  Sum_probs=34.6

Q ss_pred             ccCccccccccCCCceEEecCCC-cCCHHhHHHHHh-cCCCCcccccccc
Q psy5318          97 LQCSVCWEQFTLDEAVRKLPCDH-FYHTPCIEPWLQ-LHGTCPICRQTLH  144 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~-~~~~CP~CR~~l~  144 (176)
                      .+|.||++.-.+.   +...||| -.|..|..+.++ .+..||+||+++.
T Consensus         8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            5699999875543   3345999 578899877666 6779999999874

>KOG1785|consensus

Probab=97.67  E-value=2.6e-05  Score=65.86  Aligned_cols=49  Identities=31%  Similarity=0.769  Sum_probs=39.5

Q ss_pred             ccCccccccccCCCceEEecCCCcCCHHhHHHHHhc--CCCCccccccccCCCc
Q psy5318          97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL--HGTCPICRQTLHSESA  148 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~CP~CR~~l~~~~~  148 (176)
                      ..|.||-+.=   ..+.+-||||..|..|+..|-..  ..+||.||.++...+.
T Consensus       370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~  420 (563)
T KOG1785|consen  370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP  420 (563)
T ss_pred             HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence            4599998753   34577799999999999999733  4589999999987765

>KOG4159|consensus

Probab=97.64  E-value=2.9e-05  Score=66.38  Aligned_cols=50  Identities=30%  Similarity=0.712  Sum_probs=43.6

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      ...+..|.||+..+..+   +.+||||.||..||.+-+.....||.||..+..
T Consensus        81 ~~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   81 IRSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             ccchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence            35567899999988766   778999999999999988888899999999875

>KOG1645|consensus

Probab=97.62  E-value=4.7e-05  Score=64.41  Aligned_cols=48  Identities=29%  Similarity=0.865  Sum_probs=36.2

Q ss_pred             CccCccccccccCCC--ceEEecCCCcCCHHhHHHHHh--cCCCCccccccc
Q psy5318          96 NLQCSVCWEQFTLDE--AVRKLPCDHFYHTPCIEPWLQ--LHGTCPICRQTL  143 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~--~~~~lpC~H~Fh~~Ci~~wl~--~~~~CP~CR~~l  143 (176)
                      ..+|+||++.+...-  ..+.+.|+|.|...||++||-  ....||.|..+-
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            457999999886543  334455999999999999993  334799997643

>KOG0297|consensus

Probab=97.49  E-value=4.6e-05  Score=65.30  Aligned_cols=53  Identities=30%  Similarity=0.691  Sum_probs=45.0

Q ss_pred             cCCCccCccccccccCCCceEE-ecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA  148 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~  148 (176)
                      .++++.|++|...+.++   .. ..|+|.||..|+..|+..+..||.|+..+.....
T Consensus        18 ~~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~   71 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE   71 (391)
T ss_pred             CcccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence            46678899999999876   44 4799999999999999999999999988766554

>KOG1941|consensus

Probab=97.47  E-value=2.9e-05  Score=65.41  Aligned_cols=48  Identities=38%  Similarity=0.985  Sum_probs=38.8

Q ss_pred             CCCccCccccccccCC-CceEEecCCCcCCHHhHHHHHhcCC--CCccccc
Q psy5318          94 DSNLQCSVCWEQFTLD-EAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQ  141 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~CR~  141 (176)
                      +-...|..|-+.+... +....+||.|+||..|+...|..+.  +||.||+
T Consensus       363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            4467799999987544 4677789999999999999985543  8999994

>KOG3039|consensus

Probab=97.38  E-value=0.00019  Score=57.18  Aligned_cols=68  Identities=21%  Similarity=0.354  Sum_probs=56.3

Q ss_pred             CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccccCCCcccCCCCCCCCCCCCC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLN  163 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~~n  163 (176)
                      ....|+||.+.+.+...+..| ||||+|+..|.++.+.....||+|-.++...+...+..-+.+ -+..|
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~LqrGGTG-fa~tn  288 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQRGGTG-FAETN  288 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeeeccccc-ccccc
Confidence            457799999999998877777 599999999999999999999999999998888776554443 44444

>KOG2660|consensus

Probab=97.33  E-value=5.3e-05  Score=62.48  Aligned_cols=52  Identities=21%  Similarity=0.574  Sum_probs=42.0

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      ...-.+|.+|...|.+.  ..+.-|-|.||..||.+.|.....||.|...+...
T Consensus        12 ~n~~itC~LC~GYliDA--TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDA--TTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             cccceehhhccceeecc--hhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            34567799999988765  12234999999999999999999999998877654

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.28  E-value=7.7e-05  Score=57.56  Aligned_cols=45  Identities=18%  Similarity=0.482  Sum_probs=39.2

Q ss_pred             ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318          97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      ..|.||-++|..+   +++.|||.||..|...-++....|-+|.+...
T Consensus       197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~  241 (259)
T COG5152         197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKATY  241 (259)
T ss_pred             eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence            4699999999877   77889999999999998888889999977543

>KOG2879|consensus

Probab=97.24  E-value=0.00031  Score=56.76  Aligned_cols=53  Identities=28%  Similarity=0.473  Sum_probs=39.5

Q ss_pred             ccCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHh--cCCCCccccccccCC
Q psy5318          92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ--LHGTCPICRQTLHSE  146 (176)
Q Consensus        92 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~--~~~~CP~CR~~l~~~  146 (176)
                      ....+.+|++|.+.-..+  .+..+|+|+||..||..-+.  ...+||.|..++.+-
T Consensus       235 ~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l  289 (298)
T KOG2879|consen  235 TGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL  289 (298)
T ss_pred             cccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence            345677899998875544  34456999999999988654  346899998887643

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.24  E-value=0.00016  Score=45.26  Aligned_cols=41  Identities=24%  Similarity=0.630  Sum_probs=27.3

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhc--CCCCcc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL--HGTCPI  138 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~CP~  138 (176)
                      ...|+|.+..|+++  ++...|+|.|-+..|..|++.  ...||+
T Consensus        11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            46699999999854  444579999999999999944  336998

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=97.20  E-value=0.00018  Score=43.20  Aligned_cols=44  Identities=27%  Similarity=0.628  Sum_probs=22.0

Q ss_pred             CccccccccCCCceEEec--CCCcCCHHhHHHHHh-cCCCCccccccc
Q psy5318          99 CSVCWEQFTLDEAVRKLP--CDHFYHTPCIEPWLQ-LHGTCPICRQTL  143 (176)
Q Consensus        99 C~IC~~~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~-~~~~CP~CR~~l  143 (176)
                      |++|.+++...+. ...|  |++.+|..|...-++ ....||-||++.
T Consensus         1 cp~C~e~~d~~d~-~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDK-DFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCT-T--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCC-ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            7899998844332 3344  999999999988775 577999999874

>KOG1813|consensus

Probab=97.17  E-value=0.00012  Score=59.60  Aligned_cols=47  Identities=23%  Similarity=0.550  Sum_probs=41.0

Q ss_pred             ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      ..|-||...|..+   ++..|+|.||..|...-++....|++|.+....-
T Consensus       242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~  288 (313)
T KOG1813|consen  242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS  288 (313)
T ss_pred             ccccccccccccc---hhhcCCceeehhhhccccccCCcceecccccccc
Confidence            3499999999888   8888999999999999888889999998876543

>KOG1428|consensus

Probab=97.08  E-value=0.00036  Score=67.12  Aligned_cols=52  Identities=25%  Similarity=0.694  Sum_probs=41.4

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC----------CCccccccccC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG----------TCPICRQTLHS  145 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----------~CP~CR~~l~~  145 (176)
                      +.++.|-||+.+--......+|.|+|+||..|...-|+.+-          +||+|+.++..
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            46788999988766666778899999999999987664321          69999987753

>PF04641 Rtf2: Rtf2 RING-finger

Probab=97.04  E-value=0.0013  Score=53.38  Aligned_cols=97  Identities=20%  Similarity=0.405  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHhccCCCCCC-CC-HHHHhcCCccccccc------------ccCCCccCccccccccCCCce-EEecCCC
Q psy5318          55 GLDAIVTQLLNQMDGSGPPP-LS-TDKIKQIPVAHITKA------------QIDSNLQCSVCWEQFTLDEAV-RKLPCDH  119 (176)
Q Consensus        55 ~~~~~i~~ll~~~~~~~~~~-~~-~~~~~~l~~~~~~~~------------~~~~~~~C~IC~~~~~~~~~~-~~lpC~H  119 (176)
                      ..+.+|+.|+........+. .. -..++.+-...+...            .......|||....|...... ...+|||
T Consensus        58 nKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~~~n~~~~~~~~~~~~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~  137 (260)
T PF04641_consen   58 NKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELKFTKNPSYKEEDKSSGDNSEGRFICPVTGKEFNGKHKFVYLRPCGC  137 (260)
T ss_pred             cHHHHHHHHHhcCcCCCCccccccccCccceeeEEeEecCccccccccccccCCceeECCCCCcccCCceeEEEEcCCCC
Confidence            35889999887654311111 11 112333333333332            134567899999999554444 4447999


Q ss_pred             cCCHHhHHHHHhcCCCCccccccccCCCcccCC
Q psy5318         120 FYHTPCIEPWLQLHGTCPICRQTLHSESAESLG  152 (176)
Q Consensus       120 ~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~~  152 (176)
                      +|...++... +....||+|-.++...+.+...
T Consensus       138 V~s~~alke~-k~~~~Cp~c~~~f~~~DiI~Ln  169 (260)
T PF04641_consen  138 VFSEKALKEL-KKSKKCPVCGKPFTEEDIIPLN  169 (260)
T ss_pred             EeeHHHHHhh-cccccccccCCccccCCEEEec
Confidence            9999999986 3355799999999877665543

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.87  E-value=0.00062  Score=40.83  Aligned_cols=40  Identities=35%  Similarity=0.908  Sum_probs=26.4

Q ss_pred             CccccccccCCCceEEecC--CC---cCCHHhHHHHHhc--CCCCccc
Q psy5318          99 CSVCWEQFTLDEAVRKLPC--DH---FYHTPCIEPWLQL--HGTCPIC  139 (176)
Q Consensus        99 C~IC~~~~~~~~~~~~lpC--~H---~Fh~~Ci~~wl~~--~~~CP~C  139 (176)
                      |-||++.-...+ ..+.||  .-   ..|..|+.+|+..  +.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            678988766554 455675  44   7899999999963  4579887

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=96.85  E-value=0.00042  Score=48.19  Aligned_cols=34  Identities=32%  Similarity=0.715  Sum_probs=28.0

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHH
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIE  127 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~  127 (176)
                      .++...|++|...+.. ....+.||||+||..|+.
T Consensus        75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            3556779999999876 466778999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.83  E-value=0.0021  Score=52.76  Aligned_cols=42  Identities=31%  Similarity=0.701  Sum_probs=34.8

Q ss_pred             ccCccccccccCCCceEEec-CCCcCCHHhHHHHH-hcCCCCccccc
Q psy5318          97 LQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL-QLHGTCPICRQ  141 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl-~~~~~CP~CR~  141 (176)
                      +.|+.|...+.+.   ..++ |+|.||..||..-| .....||.|..
T Consensus       275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            5699999888766   5566 99999999998776 56678999976

>KOG4692|consensus

Probab=96.80  E-value=0.0013  Score=55.05  Aligned_cols=49  Identities=22%  Similarity=0.457  Sum_probs=41.0

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      .++..|+||+-.-..   .+..||+|.-|..||.+.+-..+.|=.|+..+..
T Consensus       420 sEd~lCpICyA~pi~---Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGPIN---AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecccch---hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            356779999775433   3778999999999999999999999999988764

>KOG3970|consensus

Probab=96.79  E-value=0.0011  Score=52.36  Aligned_cols=51  Identities=25%  Similarity=0.610  Sum_probs=40.0

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc--------CCCCccccccccCC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL--------HGTCPICRQTLHSE  146 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~CR~~l~~~  146 (176)
                      -...|..|-..+..++.++ |.|-|.||.+|+..|-..        ...||-|..++-+.
T Consensus        49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp  107 (299)
T KOG3970|consen   49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP  107 (299)
T ss_pred             CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence            3456999999998886655 779999999999999532        12699999987544

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.74  E-value=0.00073  Score=49.21  Aligned_cols=43  Identities=14%  Similarity=0.546  Sum_probs=33.1

Q ss_pred             CccCccccccccCCCceEEecCC------CcCCHHhHHHHHhcCCCCcc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCD------HFYHTPCIEPWLQLHGTCPI  138 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~------H~Fh~~Ci~~wl~~~~~CP~  138 (176)
                      ..+|.||++.+...+.++.++|+      |.||..|+.+|-+.+..=|.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPf   74 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPF   74 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCc
Confidence            34599999999886678888887      89999999999544433343

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=96.74  E-value=0.0012  Score=49.31  Aligned_cols=49  Identities=20%  Similarity=0.640  Sum_probs=35.6

Q ss_pred             CCCccCccccccccCCCceEEecC--CC---cCCHHhHHHHHhcCC--CCccccccccCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPC--DH---FYHTPCIEPWLQLHG--TCPICRQTLHSE  146 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC--~H---~Fh~~Ci~~wl~~~~--~CP~CR~~l~~~  146 (176)
                      ..+..|-||.++-..    ..-||  ..   ..|.+|+.+|+..++  +|+.|+.+..-.
T Consensus         6 ~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          6 LMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence            456679999887432    23464  44   669999999996544  799999987654

>PHA02862 5L protein; Provisional

Probab=96.69  E-value=0.001  Score=48.96  Aligned_cols=46  Identities=17%  Similarity=0.570  Sum_probs=34.3

Q ss_pred             ccCccccccccCCCceEEecCC-----CcCCHHhHHHHHhcCC--CCccccccccCC
Q psy5318          97 LQCSVCWEQFTLDEAVRKLPCD-----HFYHTPCIEPWLQLHG--TCPICRQTLHSE  146 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~~--~CP~CR~~l~~~  146 (176)
                      ..|-||.++-...    .-||.     ...|..|+.+|++..+  .|++|+.+..-+
T Consensus         3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik   55 (156)
T PHA02862          3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK   55 (156)
T ss_pred             CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence            4699999975432    35654     5889999999996544  799999987544

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.64  E-value=0.00091  Score=41.18  Aligned_cols=46  Identities=24%  Similarity=0.530  Sum_probs=33.8

Q ss_pred             ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      ..|-.|...-..+   .++||+|..+..|..-  ++-+.||.|..++...+
T Consensus         8 ~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    8 QPCVFCGFVGTKG---TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD   53 (55)
T ss_pred             eeEEEcccccccc---ccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence            3466665544333   7889999999999754  46678999999987654

>KOG1952|consensus

Probab=96.59  E-value=0.0011  Score=60.90  Aligned_cols=48  Identities=27%  Similarity=0.780  Sum_probs=37.4

Q ss_pred             CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC-------CCccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG-------TCPICRQ  141 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~-------~CP~CR~  141 (176)
                      ...++|.||.+.+.....+.-.. |-|+||..||..|.+...       .||.|+.
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            34678999999998776555443 999999999999974321       5999983

>KOG4275|consensus

Probab=96.54  E-value=0.00087  Score=54.67  Aligned_cols=42  Identities=31%  Similarity=0.659  Sum_probs=32.3

Q ss_pred             CccCccccccccCCCceEEecCCC-cCCHHhHHHHHhcCCCCcccccccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDH-FYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      +..|.||++.-.   ..+.|+||| +-|.+|-+..    ..||+||+.+.
T Consensus       300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCc---ceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence            556999998754   347899999 6688887653    38999998764

>KOG1002|consensus

Probab=96.40  E-value=0.00087  Score=58.72  Aligned_cols=51  Identities=22%  Similarity=0.606  Sum_probs=39.4

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-----CCCCccccccccCCCc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-----HGTCPICRQTLHSESA  148 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-----~~~CP~CR~~l~~~~~  148 (176)
                      +...|.+|.+.-++.   ....|.|.||+-|+..+...     +-+||.|...+.-+..
T Consensus       535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDls  590 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLS  590 (791)
T ss_pred             CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Confidence            456699998876554   67789999999999888632     3489999988866533

>KOG4739|consensus

Probab=96.39  E-value=0.0017  Score=51.67  Aligned_cols=48  Identities=19%  Similarity=0.661  Sum_probs=35.2

Q ss_pred             cCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318          98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA  148 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~  148 (176)
                      .|..|..--. ++....+.|.|+||..|...-  ....||+|++.+.....
T Consensus         5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i~l   52 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRIIQL   52 (233)
T ss_pred             EeccccccCC-CCceeeeechhhhhhhhcccC--Cccccccccceeeeeec
Confidence            3777766444 667788889999999998652  23389999998755433

>KOG1814|consensus

Probab=96.38  E-value=0.0013  Score=55.92  Aligned_cols=37  Identities=24%  Similarity=0.773  Sum_probs=32.0

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHh
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ  131 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~  131 (176)
                      ....|.||++..........+||+|+||..|++..+.
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~  219 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT  219 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence            4566999999987667888899999999999999874

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.34  E-value=0.0027  Score=53.06  Aligned_cols=49  Identities=27%  Similarity=0.658  Sum_probs=38.7

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHH--HhcCCCCcccccccc
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPW--LQLHGTCPICRQTLH  144 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~w--l~~~~~CP~CR~~l~  144 (176)
                      .++...|-||.+.+.   ...++||+|..|.-|..+.  |..+..||+||.+..
T Consensus        58 DEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          58 DEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             ccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            345667999988764   4478999999999998765  567889999998653

>PHA03096 p28-like protein; Provisional

Probab=96.24  E-value=0.0018  Score=53.17  Aligned_cols=45  Identities=24%  Similarity=0.484  Sum_probs=30.8

Q ss_pred             ccCccccccccCC----CceEEec-CCCcCCHHhHHHHHhcC---CCCccccc
Q psy5318          97 LQCSVCWEQFTLD----EAVRKLP-CDHFYHTPCIEPWLQLH---GTCPICRQ  141 (176)
Q Consensus        97 ~~C~IC~~~~~~~----~~~~~lp-C~H~Fh~~Ci~~wl~~~---~~CP~CR~  141 (176)
                      ..|.||++.....    ..-..|+ |.|.||..|+..|...+   .+||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            5699999976532    1234455 99999999999997432   24444443

>KOG1571|consensus

Probab=96.20  E-value=0.0032  Score=52.73  Aligned_cols=45  Identities=27%  Similarity=0.582  Sum_probs=32.6

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      .....|.||++...+   ...+||||.-|  |..-- +...+||+||+.+.
T Consensus       303 ~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             CCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            445679999998765   48899999866  54332 33446999999874

>KOG4185|consensus

Probab=96.19  E-value=0.0033  Score=51.65  Aligned_cols=47  Identities=30%  Similarity=0.678  Sum_probs=37.9

Q ss_pred             ccCccccccccCCC---ceEEecCCCcCCHHhHHHHHhcC-CCCccccccc
Q psy5318          97 LQCSVCWEQFTLDE---AVRKLPCDHFYHTPCIEPWLQLH-GTCPICRQTL  143 (176)
Q Consensus        97 ~~C~IC~~~~~~~~---~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l  143 (176)
                      +.|-||-++|...+   ..+.|.|||.||..|+.+.+... ..||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            46999999998663   45667799999999998877543 4799999985

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=95.99  E-value=0.0068  Score=35.60  Aligned_cols=38  Identities=26%  Similarity=0.765  Sum_probs=23.0

Q ss_pred             CccccccccCCCceEEec---CCCcCCHHhHHHHHhcCC--CCccc
Q psy5318          99 CSVCWEQFTLDEAVRKLP---CDHFYHTPCIEPWLQLHG--TCPIC  139 (176)
Q Consensus        99 C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~wl~~~~--~CP~C  139 (176)
                      |.+|.+....+   ..-+   |+-.+|..|+..+++...  .||.|
T Consensus         1 C~~C~~iv~~G---~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQG---QRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSS---EE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeee---ccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            66787777766   4443   888999999999997665  79987

; PDB: 3NW0_A 2CT0_A.

>KOG0801|consensus

Probab=95.97  E-value=0.0024  Score=47.93  Aligned_cols=29  Identities=28%  Similarity=0.799  Sum_probs=26.1

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCH
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHT  123 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~  123 (176)
                      ..-+|.||+|++..++.+.+|||-.+||+
T Consensus       176 dkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  176 DKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             cCCcEEEEhhhccCCCceeccceEEEeec
Confidence            34579999999999999999999999996

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.92  E-value=0.0046  Score=51.60  Aligned_cols=54  Identities=26%  Similarity=0.589  Sum_probs=39.4

Q ss_pred             CCCccCccccccccCCCce-EEecCCCcCCHHhHHHHH-hcCCCCccccccccCCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAV-RKLPCDHFYHTPCIEPWL-QLHGTCPICRQTLHSES  147 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~-~~lpC~H~Fh~~Ci~~wl-~~~~~CP~CR~~l~~~~  147 (176)
                      ++++.|+.|++.+...++- .-.|||-..|.-|...-- ..++.||-||+....++
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            3445599999998776643 345799888888875532 34668999999887664

>KOG3268|consensus

Probab=95.91  E-value=0.0043  Score=47.28  Aligned_cols=51  Identities=20%  Similarity=0.626  Sum_probs=35.6

Q ss_pred             ccCccccccccCCC----ceEEecCCCcCCHHhHHHHHhc----CC-------CCccccccccCCC
Q psy5318          97 LQCSVCWEQFTLDE----AVRKLPCDHFYHTPCIEPWLQL----HG-------TCPICRQTLHSES  147 (176)
Q Consensus        97 ~~C~IC~~~~~~~~----~~~~lpC~H~Fh~~Ci~~wl~~----~~-------~CP~CR~~l~~~~  147 (176)
                      ..|.||+..-..+.    ..-...||.-||.-|+..||+.    +.       .||+|..++..+.
T Consensus       166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm  231 (234)
T KOG3268|consen  166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM  231 (234)
T ss_pred             hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence            44888876544442    2223459999999999999842    21       5999999886553

>KOG0826|consensus

Probab=95.72  E-value=0.0083  Score=49.75  Aligned_cols=47  Identities=21%  Similarity=0.446  Sum_probs=38.3

Q ss_pred             CCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      ....|++|+....++   .++. -|-+||..|+...+..++.||+=..+..
T Consensus       299 ~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~  346 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS  346 (357)
T ss_pred             ccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence            456699999988776   3443 6999999999999999999998766554

>KOG0827|consensus

Probab=95.49  E-value=0.0014  Score=55.36  Aligned_cols=51  Identities=25%  Similarity=0.652  Sum_probs=43.1

Q ss_pred             ccCccccccccCC-CceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          97 LQCSVCWEQFTLD-EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        97 ~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      ..|+||.+.++.. +.+..+.|||.+|..|+.+||.....||.|+.+++...
T Consensus       197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~  248 (465)
T KOG0827|consen  197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG  248 (465)
T ss_pred             hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence            3499999988765 56667789999999999999988889999999987543

>KOG1940|consensus

Probab=95.41  E-value=0.0075  Score=49.23  Aligned_cols=45  Identities=33%  Similarity=0.761  Sum_probs=37.1

Q ss_pred             ccCccccccccCCC-ceEEecCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318          97 LQCSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ  141 (176)
Q Consensus        97 ~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~  141 (176)
                      ..|+||.+.+.... .+..++|+|..|..|.......+-+||+|.+
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            34999998765543 4566789999999999998877789999988

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=95.12  E-value=0.027  Score=34.63  Aligned_cols=43  Identities=30%  Similarity=0.696  Sum_probs=33.4

Q ss_pred             CccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCcc--cccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPI--CRQT  142 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~--CR~~  142 (176)
                      ...|.+|-+.|.+++.+++.| |+-.+|+.|..+    ...|-+  |...
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~   50 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG   50 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence            345999999998888888888 999999999754    555655  5443

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=95.01  E-value=0.058  Score=45.73  Aligned_cols=30  Identities=23%  Similarity=0.773  Sum_probs=22.4

Q ss_pred             CCCcCCHHhHHHHHhcCC-------------CCccccccccCC
Q psy5318         117 CDHFYHTPCIEPWLQLHG-------------TCPICRQTLHSE  146 (176)
Q Consensus       117 C~H~Fh~~Ci~~wl~~~~-------------~CP~CR~~l~~~  146 (176)
                      |.-.+|..|+-+|+..++             .||.||++++--
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil  353 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL  353 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence            556778899999974322             699999987643

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2114|consensus

Probab=94.99  E-value=0.011  Score=54.52  Aligned_cols=41  Identities=32%  Similarity=0.765  Sum_probs=32.1

Q ss_pred             ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccc
Q psy5318          97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQT  142 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~  142 (176)
                      ..|..|--.+..+  .+...|+|.||.+|+.   .....||.|+.+
T Consensus       841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e  881 (933)
T KOG2114|consen  841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE  881 (933)
T ss_pred             eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence            5699998887654  3445699999999998   355689999873

>KOG2932|consensus

Probab=94.88  E-value=0.011  Score=48.74  Aligned_cols=45  Identities=22%  Similarity=0.591  Sum_probs=31.1

Q ss_pred             cCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      .|.-|-..+.  -.-+.+||+|+||.+|...  ...+.||.|-.++..-
T Consensus        92 fCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrI  136 (389)
T KOG2932|consen   92 FCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRI  136 (389)
T ss_pred             eecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHHHHH
Confidence            4666644332  2336789999999999864  3456899998776443

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=94.85  E-value=0.03  Score=41.95  Aligned_cols=53  Identities=23%  Similarity=0.621  Sum_probs=34.7

Q ss_pred             CccCccccccccCCCceEEec------------CCC-cCCHHhHHHHHhc------------------------------
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLP------------CDH-FYHTPCIEPWLQL------------------------------  132 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lp------------C~H-~Fh~~Ci~~wl~~------------------------------  132 (176)
                      +..|+|||+---+.   +.|-            |+. .-|..|+.++-+.                              
T Consensus         2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (162)
T PF07800_consen    2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ   78 (162)
T ss_pred             CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence            56799999964433   3332            444 3467899887421                              


Q ss_pred             -CCCCccccccccCCCcccC
Q psy5318         133 -HGTCPICRQTLHSESAESL  151 (176)
Q Consensus       133 -~~~CP~CR~~l~~~~~~~~  151 (176)
                       +-.||+||..|..+..+..
T Consensus        79 ~~L~CPLCRG~V~GWtvve~   98 (162)
T PF07800_consen   79 PELACPLCRGEVKGWTVVEP   98 (162)
T ss_pred             ccccCccccCceeceEEchH
Confidence             1149999999988876543

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.59  E-value=0.01  Score=35.37  Aligned_cols=44  Identities=30%  Similarity=0.804  Sum_probs=26.0

Q ss_pred             cCccccccccCCCceEEecC-CCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          98 QCSVCWEQFTLDEAVRKLPC-DHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lpC-~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      .|.-||-..+     ....| .|+.|..|+...+.....||+|..+++.+
T Consensus         4 nCKsCWf~~k-----~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen    4 NCKSCWFANK-----GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             ---SS-S--S-----SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             cChhhhhcCC-----CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            4777776543     23456 59999999999999999999999998754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG3002|consensus

Probab=94.52  E-value=0.022  Score=47.25  Aligned_cols=45  Identities=24%  Similarity=0.694  Sum_probs=34.9

Q ss_pred             CCCccCccccccccCCCceEEecC--CCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPC--DHFYHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC--~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      .+-.+||||.+.+..+    ...|  ||.-|..|-.+   ....||.||.++..
T Consensus        46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK---VSNKCPTCRLPIGN   92 (299)
T ss_pred             hhhccCchhhccCccc----ceecCCCcEehhhhhhh---hcccCCcccccccc
Confidence            3456699999998866    3445  79999999753   56789999999873

>KOG1001|consensus

Probab=94.50  E-value=0.011  Score=54.04  Aligned_cols=51  Identities=24%  Similarity=0.578  Sum_probs=40.7

Q ss_pred             ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC--CCccccccccCCCcccC
Q psy5318          97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQTLHSESAESL  151 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~CR~~l~~~~~~~~  151 (176)
                      ..|.||++    .+.....+|+|.||..|+..-+....  .||.||..+..+...+.
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~  507 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSA  507 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhc
Confidence            67999999    35567888999999999998875433  69999998877766554

>KOG3053|consensus

Probab=93.72  E-value=0.024  Score=45.56  Aligned_cols=51  Identities=20%  Similarity=0.636  Sum_probs=35.0

Q ss_pred             CCCccCccccccccCCCce-EEecC-----CCcCCHHhHHHHHhcCC--------CCcccccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAV-RKLPC-----DHFYHTPCIEPWLQLHG--------TCPICRQTLH  144 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~-~~lpC-----~H~Fh~~Ci~~wl~~~~--------~CP~CR~~l~  144 (176)
                      +.+..|-||+..=++.... .+-||     .|..|..|+..|+.++.        +||-|+.+..
T Consensus        18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi   82 (293)
T KOG3053|consen   18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI   82 (293)
T ss_pred             ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence            4456699998765443221 33465     38999999999984332        5999998753

>KOG2034|consensus

Probab=93.62  E-value=0.033  Score=51.67  Aligned_cols=38  Identities=18%  Similarity=0.599  Sum_probs=30.0

Q ss_pred             ccCCCccCccccccccCCCceEEecCCCcCCHHhHHHHH
Q psy5318          92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL  130 (176)
Q Consensus        92 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl  130 (176)
                      ..+....|.+|...+... .-.+.||||.||+.|+.+..
T Consensus       813 v~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  813 VLEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             EecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            456677899998877643 55678999999999997763

>KOG0298|consensus

Probab=93.34  E-value=0.022  Score=54.72  Aligned_cols=44  Identities=27%  Similarity=0.669  Sum_probs=37.0

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ  141 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~  141 (176)
                      ...|.||++.+...  ..+..|+|.+|..|...|+..+..||.|+.
T Consensus      1153 ~~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred             ccchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence            44799999988722  155679999999999999999999999973

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=93.33  E-value=0.054  Score=39.41  Aligned_cols=50  Identities=28%  Similarity=0.649  Sum_probs=37.0

Q ss_pred             CCccCccccccccCCCceEEe-c---CCCcCCHHhHHHHHh---cCCCCccccccccCCC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKL-P---CDHFYHTPCIEPWLQ---LHGTCPICRQTLHSES  147 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~l-p---C~H~Fh~~Ci~~wl~---~~~~CP~CR~~l~~~~  147 (176)
                      .-.+|.||.|...+.   +-| |   ||-..|.-|....++   .+..||+|+.++...+
T Consensus        79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence            456799999976544   333 3   999999998877665   4558999999886554

>KOG2817|consensus

Probab=92.13  E-value=0.13  Score=43.86  Aligned_cols=54  Identities=20%  Similarity=0.330  Sum_probs=42.1

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC---CCccccccccCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSE  146 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~l~~~  146 (176)
                      ......|||=.+.-.+......|.|||+...+-+.+..+...   .||+|-.+....
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~  387 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLAS  387 (394)
T ss_pred             ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHH
Confidence            345677999888777777889999999999999999765433   699996654433

>KOG1812|consensus

Probab=91.66  E-value=0.1  Score=44.77  Aligned_cols=39  Identities=18%  Similarity=0.643  Sum_probs=27.9

Q ss_pred             CCccCcccc-ccccCCCceEEecCCCcCCHHhHHHHHhcC
Q psy5318          95 SNLQCSVCW-EQFTLDEAVRKLPCDHFYHTPCIEPWLQLH  133 (176)
Q Consensus        95 ~~~~C~IC~-~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~  133 (176)
                      ...+|.||. +.....+...+..|+|.||..|+++.++.+
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~  184 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK  184 (384)
T ss_pred             ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence            356799999 444433333456699999999999988643

>KOG4367|consensus

Probab=91.16  E-value=0.12  Score=44.74  Aligned_cols=34  Identities=29%  Similarity=0.633  Sum_probs=29.3

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHH
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL  130 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl  130 (176)
                      +++..|+||-.-|..+   ++|||+|..|.-|...-+
T Consensus         2 eeelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~   35 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREP---IILPCSHNLCQACARNIL   35 (699)
T ss_pred             cccccCceehhhccCc---eEeecccHHHHHHHHhhc
Confidence            4567799999999877   899999999999987654

>KOG3800|consensus

Probab=91.07  E-value=0.19  Score=41.17  Aligned_cols=47  Identities=21%  Similarity=0.521  Sum_probs=33.5

Q ss_pred             cCcccccc-ccCCCce-EEecCCCcCCHHhHHHHHhcC-CCCcccccccc
Q psy5318          98 QCSVCWEQ-FTLDEAV-RKLPCDHFYHTPCIEPWLQLH-GTCPICRQTLH  144 (176)
Q Consensus        98 ~C~IC~~~-~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l~  144 (176)
                      .|++|..+ |.+++-. .+-+|+|..|..|+...+... ..||.|-..+-
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            49999664 4444422 233699999999999987554 47999977654

>KOG0309|consensus

Probab=90.98  E-value=0.13  Score=47.34  Aligned_cols=25  Identities=32%  Similarity=0.792  Sum_probs=22.0

Q ss_pred             EecCCCcCCHHhHHHHHhcCCCCcc
Q psy5318         114 KLPCDHFYHTPCIEPWLQLHGTCPI  138 (176)
Q Consensus       114 ~lpC~H~Fh~~Ci~~wl~~~~~CP~  138 (176)
                      ...|+|+.|..|.+.|+.....||-
T Consensus      1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hccccccccHHHHHHHHhcCCcCCC
Confidence            3459999999999999999999984

>KOG3161|consensus

Probab=90.54  E-value=0.068  Score=48.23  Aligned_cols=43  Identities=23%  Similarity=0.662  Sum_probs=31.3

Q ss_pred             CccCccccccccCCC-ceEEecCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318          96 NLQCSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ  141 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~  141 (176)
                      -..|+||+..|.... ..+-+.|||..|.+|+...  .+.+|| |+.
T Consensus        11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~   54 (861)
T KOG3161|consen   11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR   54 (861)
T ss_pred             HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence            356999988876553 3344569999999999875  566888 543

>KOG1100|consensus

Probab=90.26  E-value=0.13  Score=40.43  Aligned_cols=40  Identities=40%  Similarity=0.793  Sum_probs=28.7

Q ss_pred             CccccccccCCCceEEecCCC-cCCHHhHHHHHhcCCCCccccccccC
Q psy5318          99 CSVCWEQFTLDEAVRKLPCDH-FYHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        99 C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      |-.|.+.   ...+..+||.| .+|..|-..    ...||+|+.....
T Consensus       161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s  201 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS  201 (207)
T ss_pred             ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence            7777554   34678889999 677788643    4469999876543

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=90.22  E-value=0.12  Score=41.39  Aligned_cols=49  Identities=22%  Similarity=0.568  Sum_probs=34.9

Q ss_pred             CCccCcccccc-ccCCCc-eEEec-CCCcCCHHhHHHHHhcCC-CCc--cccccc
Q psy5318          95 SNLQCSVCWEQ-FTLDEA-VRKLP-CDHFYHTPCIEPWLQLHG-TCP--ICRQTL  143 (176)
Q Consensus        95 ~~~~C~IC~~~-~~~~~~-~~~lp-C~H~Fh~~Ci~~wl~~~~-~CP--~CR~~l  143 (176)
                      .+..||||..+ |-+++. ..+-| |-|.+|.+|+.+-+.... .||  -|.+-|
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL   63 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL   63 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence            34569999765 444443 33346 999999999999887655 799  776543

>KOG4718|consensus

Probab=89.14  E-value=0.19  Score=39.45  Aligned_cols=46  Identities=26%  Similarity=0.624  Sum_probs=36.7

Q ss_pred             CccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      -..|.+|.+-...+   +.. .|+-.||..|+...+.+...||.|..-++
T Consensus       181 lk~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~  227 (235)
T KOG4718|consen  181 LKNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT  227 (235)
T ss_pred             HHHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence            45699999887655   444 38889999999999999999999965443

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.00  E-value=0.17  Score=30.55  Aligned_cols=43  Identities=28%  Similarity=0.754  Sum_probs=20.1

Q ss_pred             ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC---C--CCcccccc
Q psy5318          97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH---G--TCPICRQT  142 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~---~--~CP~CR~~  142 (176)
                      +.|+|....+..+  ++-..|.|.-|.+ +..||...   .  .||+|.++
T Consensus         3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence            4589988887644  4445599986644 44555322   2  69999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=87.90  E-value=0.29  Score=45.46  Aligned_cols=53  Identities=23%  Similarity=0.701  Sum_probs=38.0

Q ss_pred             CCccCccccccccCCCceEEecCC-----CcCCHHhHHHHHhcCC--CCccccccccCCCc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCD-----HFYHTPCIEPWLQLHG--TCPICRQTLHSESA  148 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~~--~CP~CR~~l~~~~~  148 (176)
                      ++..|.||..+=..++.. --||+     ...|.+|+.+|+.-..  .|-+|+.++.-++.
T Consensus        11 d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I   70 (1175)
T COG5183          11 DKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI   70 (1175)
T ss_pred             cchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence            446799998875544333 23555     4789999999996443  69999998876643

>KOG1609|consensus

Probab=87.64  E-value=0.31  Score=40.02  Aligned_cols=51  Identities=25%  Similarity=0.654  Sum_probs=36.1

Q ss_pred             CccCccccccccCCCc-eEEecCC-----CcCCHHhHHHHHh--cCCCCccccccccCC
Q psy5318          96 NLQCSVCWEQFTLDEA-VRKLPCD-----HFYHTPCIEPWLQ--LHGTCPICRQTLHSE  146 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~-~~~lpC~-----H~Fh~~Ci~~wl~--~~~~CP~CR~~l~~~  146 (176)
                      ...|-||..+...... ....||.     +..|..|+..|+.  .+..|.+|.......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            4679999987653321 3556754     5779999999996  445799998865444

>KOG3113|consensus

Probab=87.08  E-value=1.7  Score=35.19  Aligned_cols=51  Identities=10%  Similarity=0.264  Sum_probs=36.1

Q ss_pred             CccCccccccccCCCce-EEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318          96 NLQCSVCWEQFTLDEAV-RKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA  148 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~  148 (176)
                      ...|+|---++...... ...+|||+|-..-+.+.  ...+|++|.+.+..++-
T Consensus       111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dv  162 (293)
T KOG3113|consen  111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDV  162 (293)
T ss_pred             eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCe
Confidence            34588876666544333 34469999998877763  46689999998877665

>KOG0802|consensus

Probab=86.50  E-value=0.45  Score=42.65  Aligned_cols=53  Identities=26%  Similarity=0.817  Sum_probs=41.3

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCcccCCCC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPA  154 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~~~~  154 (176)
                      ....|.||+...    ..+..+|.   |..|+..|+..+..||+|+..+..+........
T Consensus       478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~~~~~  530 (543)
T KOG0802|consen  478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLSKNSS  530 (543)
T ss_pred             ccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccccCcccc
Confidence            356699998887    33666788   899999999999999999998877665554433

>KOG3899|consensus

Probab=86.43  E-value=0.3  Score=40.18  Aligned_cols=31  Identities=19%  Similarity=0.644  Sum_probs=22.9

Q ss_pred             CCCcCCHHhHHHHHhc-------------CCCCccccccccCCC
Q psy5318         117 CDHFYHTPCIEPWLQL-------------HGTCPICRQTLHSES  147 (176)
Q Consensus       117 C~H~Fh~~Ci~~wl~~-------------~~~CP~CR~~l~~~~  147 (176)
                      |...+|.+|+-+|+..             +-+||.||+.++-.+
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d  368 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD  368 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence            5667888999998732             226999999886543

>KOG1829|consensus

Probab=86.27  E-value=0.2  Score=45.03  Aligned_cols=43  Identities=23%  Similarity=0.726  Sum_probs=27.4

Q ss_pred             CccCcccccc-----ccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCcccccc
Q psy5318          96 NLQCSVCWEQ-----FTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQT  142 (176)
Q Consensus        96 ~~~C~IC~~~-----~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~  142 (176)
                      ...|.+|...     |. .+.++.. .|+++||..|...   .+..||.|-+-
T Consensus       511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R~  559 (580)
T KOG1829|consen  511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCERR  559 (580)
T ss_pred             eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchHHH
Confidence            4457777432     32 2334444 4999999999764   44459999553

>KOG4362|consensus

Probab=85.35  E-value=0.19  Score=45.80  Aligned_cols=48  Identities=23%  Similarity=0.706  Sum_probs=37.2

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC---CCccccccccCC
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSE  146 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~l~~~  146 (176)
                      ..+|+||...+..+   ..+.|.|.|+..|+..-+...+   .||+|+..+...
T Consensus        21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~   71 (684)
T KOG4362|consen   21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR   71 (684)
T ss_pred             hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence            45699999988876   6678999999999977664433   699999655443

>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length

Probab=85.32  E-value=2.1  Score=26.48  Aligned_cols=47  Identities=23%  Similarity=0.519  Sum_probs=33.5

Q ss_pred             ccCccccccccCCC-ceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318          97 LQCSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        97 ~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      ..|-.|-.++..+. ...+..=...||..|....|  +..||.|...+..
T Consensus         6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~   53 (57)
T PF06906_consen    6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVR   53 (57)
T ss_pred             CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence            45888888887665 33443323479999999865  6799999888754

This family contains a number of conserved cysteine residues and its function is unknown.

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.79  E-value=0.15  Score=30.40  Aligned_cols=43  Identities=30%  Similarity=0.670  Sum_probs=27.7

Q ss_pred             cCccccccccCCCceEEe-cCCCcCCHHhHHHHHh------cCCCCccccc
Q psy5318          98 QCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ------LHGTCPICRQ  141 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~------~~~~CP~CR~  141 (176)
                      .|.||...- .....+.- .|+..||..|+..-..      ..-.||.|+.
T Consensus         1 ~C~vC~~~~-~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~   50 (51)
T PF00628_consen    1 YCPVCGQSD-DDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP   50 (51)
T ss_dssp             EBTTTTSSC-TTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred             eCcCCCCcC-CCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence            388898833 33344444 4999999999965432      1236888864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>KOG2068|consensus

Probab=83.36  E-value=1.4  Score=36.79  Aligned_cols=55  Identities=24%  Similarity=0.569  Sum_probs=38.5

Q ss_pred             CccCccccccccCCC-ceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCccc
Q psy5318          96 NLQCSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAES  150 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~  150 (176)
                      ...|+||.+.....+ ...-.||++..|..|+..-...+.+||.||++....+...
T Consensus       249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t~~s  304 (327)
T KOG2068|consen  249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNTKKS  304 (327)
T ss_pred             CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccCcccc
Confidence            366999999774333 2233458888888888877778889999997665544433

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=81.06  E-value=0.85  Score=23.69  Aligned_cols=22  Identities=23%  Similarity=0.602  Sum_probs=11.8

Q ss_pred             cCccccccccCCCceEEec-CCCcC
Q psy5318          98 QCSVCWEQFTLDEAVRKLP-CDHFY  121 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lp-C~H~F  121 (176)
                      .|+-|...+.  .....-| |||.|
T Consensus         2 ~CP~C~~~V~--~~~~~Cp~CG~~F   24 (26)
T PF10571_consen    2 TCPECGAEVP--ESAKFCPHCGYDF   24 (26)
T ss_pred             cCCCCcCCch--hhcCcCCCCCCCC
Confidence            3666766553  2233445 66665

Several members are annotated as putative helicases.

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=80.61  E-value=1.1  Score=27.21  Aligned_cols=42  Identities=21%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             CccccccccCC------CceEEec-CCCcCCHHhHHHHHhcCCCCcccc
Q psy5318          99 CSVCWEQFTLD------EAVRKLP-CDHFYHTPCIEPWLQLHGTCPICR  140 (176)
Q Consensus        99 C~IC~~~~~~~------~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR  140 (176)
                      |--|+..|...      ....+-| |++.||.+|=.--=+.=..||-|.
T Consensus         2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~   50 (51)
T PF07975_consen    2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE   50 (51)
T ss_dssp             ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred             CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence            44566666543      1334455 999999999653223334799883

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>KOG1812|consensus

Probab=80.57  E-value=0.87  Score=39.14  Aligned_cols=44  Identities=27%  Similarity=0.537  Sum_probs=31.8

Q ss_pred             CccCccccccccCCCce--EEecCCCcCCHHhHHHHHhcCCCCccc
Q psy5318          96 NLQCSVCWEQFTLDEAV--RKLPCDHFYHTPCIEPWLQLHGTCPIC  139 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~--~~lpC~H~Fh~~Ci~~wl~~~~~CP~C  139 (176)
                      -..|+.|.-.+......  ....|+|.||..|...|...+..|..|
T Consensus       306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~  351 (384)
T KOG1812|consen  306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC  351 (384)
T ss_pred             cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence            45699997776544433  333599999999999998777767554

>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3

Probab=80.49  E-value=1.6  Score=23.72  Aligned_cols=37  Identities=24%  Similarity=0.561  Sum_probs=24.3

Q ss_pred             CccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318          99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        99 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      |..|.+.+...+.. ...=+..||..|.        .|..|+..|.
T Consensus         2 C~~C~~~i~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~L~   38 (39)
T smart00132        2 CAGCGKPIRGGELV-LRALGKVWHPECF--------KCSKCGKPLG   38 (39)
T ss_pred             ccccCCcccCCcEE-EEeCCccccccCC--------CCcccCCcCc
Confidence            77888877654222 2234678888876        5888877663

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		1e-13
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		9e-10
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-07
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		1e-06
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		6e-06
4ayc_B	138	Rnf8 Ring Domain Structure Length = 138		7e-06
4ayc_A	138	Rnf8 Ring Domain Structure Length = 138		8e-06
4epo_C	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		2e-05
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		3e-04

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 89  TKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
           T+  + S L+C VC E + L E+VR+LPC+H +H  CI PWL+ H +CP+CR++L
Sbjct: 8   TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 73  PPLSTDKIKQIPVAHITK--AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL 130
           PP S + I  +P   +T+    +   + C +C  ++   +   +LPC H++H PC+  WL
Sbjct: 15  PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL 74
Query: 131 QLHGTCPICR 140
           Q  GTCP+CR
Sbjct: 75  QKSGTCPVCR 84

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 93  IDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTL 143
           +D  ++C+VC  +    E  R LP C H +H  C++ WL  H TCP+CR T+
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 99  CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICR 140
           C VC   F   + +R LPC+H +H  C++ WL+ + TCPICR
Sbjct: 26  CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 98  QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICR 140
           +C++C       E VR+LPC H +H  C++ WL  +  CPICR
Sbjct: 16  KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58

>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 44  GNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCW 103
           G+  +    ++  +AI+     +++ +          K+  ++H+    +++ LQC +C 
Sbjct: 2   GSMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDV-LENELQCIICS 60
Query: 104 EQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
           E F   EAV  L C H + + CI  W++    CPICR+ +
Sbjct: 61  EYFI--EAV-TLNCAHSFCSYCINEWMKRKIECPICRKDI 97

>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 44  GNPGDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCW 103
           G+  +    ++  +AI+     +++ +          K+  ++H+    +++ LQC +C 
Sbjct: 2   GSMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDV-LENELQCIICS 60
Query: 104 EQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
           E F   EAV  L C H + + CI  W++    CPICR+ +
Sbjct: 61  EYFI--EAV-TLNCAHSFCSYCINEWMKRKIECPICRKDI 97

>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 52  GREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEA 111
            ++  +AI+     +++ +          K+  ++H+    +++ LQC +C E F   EA
Sbjct: 21  SKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDV-LENELQCIICSEYFI--EA 77
Query: 112 VRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
           V  L C H + + CI  W++    CPICR+ +
Sbjct: 78  V-TLNCAHSFCSYCINEWMKRKIECPICRKDI 108

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 99  CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPIC 139
           C+VC E F   + +   PC H +H  C+  WL++   CP+C
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	1e-32
2ect_A	78	Ring finger protein 126; metal binding protein, st	2e-28
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	4e-24
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-23
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	3e-23
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	9e-20
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	4e-19
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	3e-17
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-16
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-14
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-13
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	4e-13
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	5e-13
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	9e-12
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-11
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	6e-11
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	6e-11
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-09
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	2e-09
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-09
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	4e-09
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	8e-09
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	1e-08
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	2e-08
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	3e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	5e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-05
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	6e-08
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	3e-07
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	5e-07
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	6e-07
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	6e-07
3nw0_A	238	Non-structural maintenance of chromosomes element	8e-07
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	8e-07
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	1e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-06
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	6e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	6e-06
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	6e-06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-05
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	1e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	3e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	3e-05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	1e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	3e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	3e-04
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	4e-04

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score =  110 bits (278), Expect = 1e-32
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 65  NQMDGSGPPPLSTDKIKQIPVAHITKAQ--IDSNLQCSVCWEQFTLDEAVRKLPCDHFYH 122
           +       PP S + I  +P   +T+    +   + C +C  ++   +   +LPC H++H
Sbjct: 7   HHSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFH 66

Query: 123 TPCIEPWLQLHGTCPICRQTL 143
            PC+  WLQ  GTCP+CR   
Sbjct: 67  KPCVSIWLQKSGTCPVCRCMF 87

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 99.8 bits (249), Expect = 2e-28
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 86  AHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL-- 143
           +  T+  + S L+C VC E + L E+VR+LPC+H +H  CI PWL+ H +CP+CR++L  
Sbjct: 5   SSGTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64

Query: 144 HSESAESLGPAGAG 157
            + +    G  G G
Sbjct: 65  QNTATNPPGLTGVG 78

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 88.9 bits (221), Expect = 4e-24
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 76  STDKIKQIPVAHITKAQIDS-NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG 134
           S+    Q+P          S    C VC   F   + +R LPC+H +H  C++ WL+ + 
Sbjct: 2   SSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR 61

Query: 135 TCPICRQTLHSESA 148
           TCPICR      S 
Sbjct: 62  TCPICRADSGPSSG 75

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 87.5 bits (217), Expect = 1e-23
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 89  TKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148
              +++ +  C+VC E F   + +   PC H +H  C+  WL++   CP+C   +   + 
Sbjct: 8   KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67

Query: 149 ESLGPAG 155
            S   +G
Sbjct: 68  LSGPSSG 74

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 86.3 bits (214), Expect = 3e-23
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 94  DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAES 150
           D+  +C++C       E VR+LPC H +H  C++ WL  +  CPICR  + ++    
Sbjct: 12  DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 68

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 77.4 bits (191), Expect = 9e-20
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 89  TKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148
              Q+    +C +C +      A   LPC H +   CI+ W   H  CPICR  +   + 
Sbjct: 8   RVKQLTDEEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63

Query: 149 ESLGPAG 155
            S   +G
Sbjct: 64  SSGPSSG 70

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 75.3 bits (186), Expect = 4e-19
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 93  IDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTL 143
           +D  ++C+VC  +    E  R LP C H +H  C++ WL  H TCP+CR T+
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 70.4 bits (173), Expect = 3e-17
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 94  DSNLQCSVCWEQ-FTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
             +  C +C E   T       LPC H  H  C E  L+    CP+C    
Sbjct: 3   SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 68.6 bits (168), Expect = 3e-16
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 98  QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145
           +C +C E  +       LPC H +   CI  W++ + TCP+C+  + S
Sbjct: 7   RCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 63.8 bits (155), Expect = 2e-14
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 94  DSNLQCSVCWEQFT----LDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146
              + C +C + ++        +    C H + + C+   L+   TCP CR+ ++ +
Sbjct: 13  SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 61.8 bits (150), Expect = 1e-13
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 89  TKAQIDSNLQCSVCWEQFT----LDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144
           T  +    + C +C + ++        +    C H + + C+   L+   TCP CR+ ++
Sbjct: 3   TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62

Query: 145 SES 147
            + 
Sbjct: 63  HKR 65

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 60.2 bits (146), Expect = 4e-13
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 95  SNLQCSVCWEQFT----LDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147
           + + C +C + ++        +    C H + + C+   L+   TCP CR+ ++ + 
Sbjct: 2   AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 60.3 bits (146), Expect = 5e-13
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 99  CSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTL 143
           C  C  +   ++ V     C+H +H  C+  W++ +  CP+C+Q  
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 57.6 bits (139), Expect = 9e-12
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 3/68 (4%)

Query: 81  KQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPIC 139
               +   +   I    +C +C E+    +A     C       CI  WL      CP C
Sbjct: 7   HHSHMDEQSVESIAEVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHC 64

Query: 140 RQTLHSES 147
           R  L    
Sbjct: 65  RAPLQLRE 72

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 91  AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145
           +++   + CS+C       +A     C H +   CI         CP C   +H 
Sbjct: 10  SELTPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 57.0 bits (137), Expect = 6e-11
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 56  LDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKL 115
            +AI+     +++ +          K+  ++H+    +++ LQC +C E F   EAV  L
Sbjct: 25  FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDV-LENELQCIICSEYFI--EAVT-L 80

Query: 116 PCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147
            C H + + CI  W++    CPICR+ + S++
Sbjct: 81  NCAHSFCSYCINEWMKRKIECPICRKDIKSKT 112

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 55.6 bits (134), Expect = 6e-11
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 91  AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145
            +++ +L C +C   F   +A   + C H +   CI  +L+    CPIC   +H 
Sbjct: 10  TELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 94  DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGP 153
            +  +C++C +       V  LPC H +   C++    L   C +CRQ +  +  +S   
Sbjct: 13  LTVPECAICLQTCV--HPVS-LPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSGPS 69

Query: 154 AG 155
           +G
Sbjct: 70  SG 71

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 28/166 (16%), Positives = 47/166 (28%), Gaps = 34/166 (20%)

Query: 14  SSKRTRRTLSASVGVSLANPEFAPLLP--HFEGNPGDYAWGREGLDA----------IVT 61
            ++         + +++A+P            G   + A  R  L            I  
Sbjct: 220 KTRLFPLKDRVYLKLTIADPFACIASMSLKIIGPTEEVARLRHVLSDGLSNWDSEMNIHK 279

Query: 62  QLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCD--- 118
            LL   D    P                  + +  L+C++C+        V  + CD   
Sbjct: 280 NLLRMFDLCYFPM------PDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAK 333

Query: 119 --HFYHTPCIEPWLQ-----------LHGTCPICRQTLHSESAESL 151
                H  C+E W +             G CP C+  L +  A  L
Sbjct: 334 CVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAALL 379

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 67  MDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCI 126
           MD                        ID  L+C +C+E F    A+    C H Y + CI
Sbjct: 1   MDSLAESRWPPGLAVM--------KTIDDLLRCGICFEYFN--IAMIIPQCSHNYCSLCI 50

Query: 127 EPWLQLHGTCPICRQTLHSES 147
             +L     CP C  T+    
Sbjct: 51  RKFLSYKTQCPTCCVTVTEPD 71

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 53.6 bits (128), Expect = 4e-09
 Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 13/91 (14%)

Query: 67  MDGSGPPPLSTDKIKQIPVAHITKAQ---------IDSNLQCSVCWEQFTLDEAVRKLPC 117
            DG    P  T   +  P  HI   Q           +   C +C E       V+  PC
Sbjct: 294 PDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDK---DVKIEPC 350

Query: 118 DHFYHTPCIEPWLQLHG-TCPICRQTLHSES 147
            H   T C+  W +  G  CP CR  +    
Sbjct: 351 GHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.5 bits (118), Expect = 8e-09
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 94  DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
           +   +C +C + F     V    C H++   C     +    C IC Q
Sbjct: 13  EIPFRCFICRQAFQ--NPVV-TKCRHYFCESCALEHFRATPRCYICDQ 57

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 49.5 bits (117), Expect = 1e-08
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 98  QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
             +      + +  V    C+H +H  CI  WL+    CP+  +
Sbjct: 65  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 108

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 92  QIDSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSES 147
            +   L+C +C E FT ++   K L C H     C+E  L        CP C +     S
Sbjct: 11  ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70

Query: 148 AESL 151
              L
Sbjct: 71  LTQL 74

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 102 CWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
                + +  V    C+H +H  CI  WL+    CP+  +
Sbjct: 58  QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 97

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 48.6 bits (115), Expect = 5e-08
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 91  AQIDSNLQCSVCWEQFTLDEAVRK----LPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146
           A     + C +C + ++      +      C H + + C+   L+   TCP CR+ ++ +
Sbjct: 2   AMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 77  TDKIKQIPVAHITKAQIDSNLQCSVCWEQFT----LDEAVRKLPCDHFYHTPCIEPWLQL 132
           T + K     +         + C +C + ++        +    C H + + C+   L+ 
Sbjct: 53  TCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 112

Query: 133 HGTCPICRQTL 143
             TCP CR+ +
Sbjct: 113 ANTCPTCRKKI 123

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 46.8 bits (111), Expect = 6e-08
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 94  DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQ 141
           D+   C++C       +      C    H PC+  + Q +    CP C  
Sbjct: 13  DAVKICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 60

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 89  TKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQTLHS 145
               I   L C +C +  T  +AV    C + Y   CI   L      TCP C Q   S
Sbjct: 8   EDDPIPDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 92  QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSES 147
            ++S  +C +C     L EAV+  PC H +   CI   ++  G  CP+  + L    
Sbjct: 14  PLESKYECPIC--LMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 46.2 bits (109), Expect = 6e-07
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 92  QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSE 146
            ++S  +C +C     L EAV+  PC H +   CI   ++  G  CP+  + L   
Sbjct: 14  PLESKYECPIC--LMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 45.3 bits (107), Expect = 6e-07
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 91  AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHS 145
           ++++   QC  C E       +    C H     C++   +    +CP CR  L  
Sbjct: 47  SKVEETFQCICCQELVF--RPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 46.7 bits (110), Expect = 8e-07
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 94  DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQTLHSESAESL 151
           D+   C++C       +      C    H PC+  + Q +    CP C      E  +  
Sbjct: 178 DAVKICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKVF 235

Query: 152 GP 153
            P
Sbjct: 236 DP 237

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 44.8 bits (105), Expect = 8e-07
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 24/93 (25%)

Query: 70  SGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTL---------------DEAVRK 114
           SG        I++    +  + ++     C +C E+  +                   R 
Sbjct: 3   SGSSGEPEQVIRK----YTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRL 58

Query: 115 LPCDHFYHTPCIEPWLQ-----LHGTCPICRQT 142
             C H +H  C+              CP C+  
Sbjct: 59  TKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 90  KAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQTLHSES 147
              I   L C +C +  T  +AV    C + Y   CI   L      TCP C Q     S
Sbjct: 7   DDPIPDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN--DVS 62

Query: 148 AESLGP 153
            ++L  
Sbjct: 63  PDALIA 68

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 91  AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSE 146
           A    ++ C +C  +  L + V    C H +   CI   L++ G  CP CR      
Sbjct: 18  AHFVKSISCQIC--EHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 4/57 (7%)

Query: 92  QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSES 147
            ++   +C  C     L    +   C H +   C+   L      C  C++++  + 
Sbjct: 11  TVEDKYKCEKCHL--VLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 97  LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSESAESLGP 153
            QC +C E     E V  LPC+H    PC +  ++     CP CR+ + S +      
Sbjct: 16  CQCGICMEILV--EPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRR 70

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 41.2 bits (97), Expect = 6e-06
 Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 95  SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146
           S++ C++  +       V        +    +E +++  G  PI  + L  E
Sbjct: 2   SHMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 42.6 bits (100), Expect = 6e-06
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 91  AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQT 142
            +++  L+CS C       E V    C+H + + C+   +     CP+C   
Sbjct: 17  DRLEKLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTP 64

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 40.8 bits (96), Expect = 6e-06
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 97  LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
           L+C  C  +       + LPC H   + C+E        CPIC+ 
Sbjct: 7   LRCQQCQAEAK---CPKLLPCLHTLCSGCLE---ASGMQCPICQA 45

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 94  DSNLQCSVCWEQFTL-DEAVRKLPCDHFYHTPCIEPWL-QLHGTCPICRQTLHSESAE 149
           +  ++C +C E   + D       C +     C        +G CP CR+    + A 
Sbjct: 9   EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 69  GSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEP 128
            S  PP S + ++      +   ++++   CS C  +  L    +   C H Y + C+  
Sbjct: 4   ASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSAC--RNVLRRPFQ-AQCGHRYCSFCLAS 60

Query: 129 WLQLHG-TCPICRQTLHSE 146
            L      C  C      E
Sbjct: 61  ILSSGPQNCAACVHEGIYE 79

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 91  AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHS 145
            +++ +  C  C E     + V    C H     C++   +    +CP CR  L  
Sbjct: 73  KKLEQSFMCVCCQELVY--QPV-TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 88  ITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSE 146
           ++   + S L C +C +       +    C H +   CI   L+     CP CR+ L S+
Sbjct: 46  VSPRSLHSELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 91  AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT--CPI--CRQTLHSE 146
                 L C +  + +     +    C+H +    I+ +LQ + T  CP   C Q +   
Sbjct: 176 EGGKIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233

Query: 147 S 147
            
Sbjct: 234 D 234

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 97  LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSES 147
           L+C +C E     E V    CDH +   C+   L        CP+C+  +   S
Sbjct: 22  LECPICLELIK--EPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 97  LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT---CPICRQTLHSES 147
           + C +C +     + V  + C H +   CI    +       CP+C+ ++   +
Sbjct: 21  VICPICLDILQ--KPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 6/35 (17%), Positives = 18/35 (51%)

Query: 99  CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH 133
           C +C  ++ +++      C   + T C++ +++L 
Sbjct: 8   CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL 42

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.73
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.65
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.63
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.63
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.62
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.6
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.52
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.5
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.5
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.49
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.48
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.47
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.47
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.46
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.45
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.45
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.44
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.43
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.42
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.41
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.41
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.4
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.4
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.39
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.38
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.37
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.35
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.35
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.34
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.33
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.32
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.32
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.32
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.32
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.3
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.29
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.27
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.26
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.26
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.25
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.24
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.23
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.22
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.21
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.21
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.19
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.18
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.17
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.16
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.15
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.14
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.12
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.11
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.08
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.07
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.99
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.98
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.97
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.89
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.83
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.82
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.81
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.77
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.75
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.72
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.71
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.63
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.6
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.35
3nw0_A	238	Non-structural maintenance of chromosomes element	98.27
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	97.51
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	96.31
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.58
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	95.14
1we9_A	64	PHD finger family protein; structural genomics, PH	93.69
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	92.98
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	91.55
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	91.47
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	91.36
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	91.35
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	90.59
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	90.59
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	90.51
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	88.31
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	88.25
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	88.23
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	87.85
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	87.62
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	87.56
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	87.06
2yt5_A	66	Metal-response element-binding transcription facto	86.89
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	86.89
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	86.42
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	86.03
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	85.34
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	84.31
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	84.12
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	82.75
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	81.46
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	81.41
1wee_A	72	PHD finger family protein; structural genomics, PH	80.79
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	80.48
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	80.24

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.73  E-value=3.7e-18  Score=116.26  Aligned_cols=77  Identities=31%  Similarity=0.870  Sum_probs=67.0

Q ss_pred             CCCCCCCCHHHHhcCCcccccccc--cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318          69 GSGPPPLSTDKIKQIPVAHITKAQ--IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        69 ~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      ....++++++.+..++...+....  ..++..|+||++.|..++.++.++|+|.||..||..|++.+.+||+||+.+..
T Consensus        11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            455678999999999988876543  34667899999999988888999999999999999999999999999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=3e-17  Score=107.55  Aligned_cols=68  Identities=31%  Similarity=0.737  Sum_probs=55.5

Q ss_pred             HHhcCCcccccccc-cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          79 KIKQIPVAHITKAQ-IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        79 ~~~~l~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      .+..++...+.... ..+...|+||++.+..++.++.++|+|.||..||.+|++.+.+||+||+.+...
T Consensus         5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            34556666555432 345678999999999888889999999999999999999999999999988653

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.63  E-value=2.8e-16  Score=103.56  Aligned_cols=59  Identities=44%  Similarity=1.143  Sum_probs=51.7

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCcccC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESL  151 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~  151 (176)
                      ......|+||++.|..+..++.++|+|.||..||.+|++.+.+||+||+.+........
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence            34567799999999988888889999999999999999988999999999987765544

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=3.4e-16  Score=102.15  Aligned_cols=55  Identities=27%  Similarity=0.784  Sum_probs=48.8

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA  148 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~  148 (176)
                      ..+..|+||++.+..+..+..++|+|.||..||.+|++.+.+||+||+++.....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ   67 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence            4567799999999988888889999999999999999999999999999865433

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.62  E-value=4.6e-16  Score=100.17  Aligned_cols=54  Identities=35%  Similarity=0.960  Sum_probs=48.3

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      .....|+||++.+..++.++.++|+|.||..||..|++.+.+||+||..+....
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            456679999999988888899999999999999999999999999999987653

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.60  E-value=3.8e-16  Score=96.09  Aligned_cols=51  Identities=41%  Similarity=1.003  Sum_probs=46.1

Q ss_pred             CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      +++..|+||++.+..++.+..++ |+|.||..|+.+|++.+.+||+||+++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            45567999999999888888898 9999999999999999999999999874

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.5e-14  Score=93.92  Aligned_cols=56  Identities=21%  Similarity=0.493  Sum_probs=46.9

Q ss_pred             cCCCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccccCCCcccC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESL  151 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~  151 (176)
                      .++...|+||++.+.++   +.+ +|+|.||..||..|++.+..||+||+.+...+....
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           12 LTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred             cCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence            34567799999999864   555 899999999999999988999999999987655543

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.50  E-value=8.4e-15  Score=94.48  Aligned_cols=55  Identities=20%  Similarity=0.644  Sum_probs=46.5

Q ss_pred             CCCccCccccccccCC----CceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318          94 DSNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA  148 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~  148 (176)
                      +++..|+||++.+...    ...+.++|||.||..||.+|++.+.+||+||+.+...+.
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   66 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence            4567799999998653    455778999999999999999999999999999876543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.50  E-value=1.1e-14  Score=89.47  Aligned_cols=50  Identities=28%  Similarity=0.685  Sum_probs=43.0

Q ss_pred             CCccCccccccccCC-CceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318          95 SNLQCSVCWEQFTLD-EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      ....|+||++.+... +.++.++|+|.||..||.+|++.+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            356699999998654 35677899999999999999998899999999874

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.1e-14  Score=93.32  Aligned_cols=52  Identities=21%  Similarity=0.689  Sum_probs=44.4

Q ss_pred             CCCccCccccccccCC----CceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318          94 DSNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      .+...|+||++.+...    ..++.++|+|.||..||..|++.+.+||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            4567799999998753    345778999999999999999999999999998854

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=7.4e-15  Score=95.11  Aligned_cols=52  Identities=23%  Similarity=0.565  Sum_probs=44.9

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA  148 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~  148 (176)
                      .+...|+||++.+...   +.++|+|.||..||..|++.+.+||+||..+.....
T Consensus        13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~   64 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL   64 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred             CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence            4566799999998765   778999999999999999988999999999876543

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=6.9e-15  Score=97.88  Aligned_cols=51  Identities=25%  Similarity=0.716  Sum_probs=41.1

Q ss_pred             CccCccccccccC-----------CCceEEec-CCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          96 NLQCSVCWEQFTL-----------DEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        96 ~~~C~IC~~~~~~-----------~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      +..|+||++.|..           ++.++.++ |+|.||..||.+|++.+.+||+||+++..+
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            4457777777743           45566666 999999999999999999999999998654

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.47  E-value=1.8e-14  Score=90.88  Aligned_cols=53  Identities=21%  Similarity=0.646  Sum_probs=45.1

Q ss_pred             CccCccccccccCC----CceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318          96 NLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA  148 (176)
Q Consensus        96 ~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~  148 (176)
                      ...|+||++.+..+    ..+..++|||.||..|+.+|++.+.+||+||+++...+.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   59 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   59 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence            46799999998753    445778999999999999999999999999999876543

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.46  E-value=4.4e-14  Score=99.37  Aligned_cols=51  Identities=22%  Similarity=0.563  Sum_probs=41.5

Q ss_pred             CccCccccccccCCC---------------ceEEecCCCcCCHHhHHHHH-----hcCCCCccccccccCC
Q psy5318          96 NLQCSVCWEQFTLDE---------------AVRKLPCDHFYHTPCIEPWL-----QLHGTCPICRQTLHSE  146 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl-----~~~~~CP~CR~~l~~~  146 (176)
                      +..|+||++.|..+.               .++.++|+|.||..||..|+     ..+.+||+||..+...
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            457999999986542               33467899999999999999     4566899999988655

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=3.5e-14  Score=91.46  Aligned_cols=50  Identities=30%  Similarity=0.806  Sum_probs=43.9

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      .+...|+||++.+..    +.++|+|.||..||.+|++.+.+||+||+.+...+
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            456779999999875    77899999999999999998999999999987554

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.45  E-value=4.1e-14  Score=98.87  Aligned_cols=52  Identities=23%  Similarity=0.522  Sum_probs=43.5

Q ss_pred             CCccCccccccccCCC---------------ceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          95 SNLQCSVCWEQFTLDE---------------AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      ++..|+||++.|...-               .++.++|+|.||..||.+||+.+.+||+||+++..+
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~  102 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ  102 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence            4667999999987541               356678999999999999999999999999987543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.44  E-value=1e-13  Score=90.45  Aligned_cols=52  Identities=33%  Similarity=0.602  Sum_probs=43.4

Q ss_pred             cCCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcC--CCCccccccccCCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH--GTCPICRQTLHSES  147 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~--~~CP~CR~~l~~~~  147 (176)
                      ..+...|+||++.+..+   +.++ |+|.||..||..|++.+  ..||+||+++...+
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2yur_A           12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD   66 (74)
T ss_dssp             SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred             CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence            34567799999999866   7799 99999999999999765  58999999765443

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.5e-13  Score=92.11  Aligned_cols=55  Identities=29%  Similarity=0.646  Sum_probs=46.4

Q ss_pred             cCCCccCccccccccCCCc-eEEecCCCcCCHHhHHHHHhcC---CCCccccccccCCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEA-VRKLPCDHFYHTPCIEPWLQLH---GTCPICRQTLHSES  147 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~---~~CP~CR~~l~~~~  147 (176)
                      ..+...|+||++.|...+. .+.++|||.||..|+..|++.+   ..||+||+.+...+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   70 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS   70 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence            4566789999999987553 6788999999999999999875   68999999886654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.42  E-value=7.5e-14  Score=89.33  Aligned_cols=49  Identities=31%  Similarity=0.766  Sum_probs=42.5

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      ....|+||++.+..  .++.++|+|.||..|+..|++.+.+||+||..+..
T Consensus         4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            45679999999864  35778999999999999999989999999998863

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=88.24  Aligned_cols=51  Identities=16%  Similarity=0.564  Sum_probs=42.9

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHh-cCCCCccccccccCCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSES  147 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~~~  147 (176)
                      .+...|+||++.+..+   +.++|||.||..||..|++ ....||+||+.+..++
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            4567799999999866   5589999999999999994 5668999999987653

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=91.61  Aligned_cols=48  Identities=21%  Similarity=0.565  Sum_probs=42.8

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      .....|+||++.+..+   ++++|+|.||..||..|++...+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            4567799999999765   67899999999999999998899999999985

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.4e-13  Score=89.16  Aligned_cols=52  Identities=17%  Similarity=0.579  Sum_probs=43.3

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHh---cCCCCccccccccCCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ---LHGTCPICRQTLHSES  147 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~CR~~l~~~~  147 (176)
                      ..+...|+||++.+...   +.++|+|.||..||..|++   ....||+||+.+..++
T Consensus        17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            34567899999998754   7789999999999999996   4558999999987653

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.40  E-value=1.7e-13  Score=90.03  Aligned_cols=52  Identities=23%  Similarity=0.493  Sum_probs=44.6

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccccCCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSES  147 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~~  147 (176)
                      ..+...|+||++.+.++   +.++|||.||..||..|++. +.+||+||.++...+
T Consensus         5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~   57 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG   57 (78)
T ss_dssp             CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred             CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence            34567899999999866   77899999999999999986 778999999987553

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=2.8e-13  Score=89.95  Aligned_cols=53  Identities=25%  Similarity=0.702  Sum_probs=43.9

Q ss_pred             CCCccCccccccccCCCceEEecCC-----CcCCHHhHHHHHhcC--CCCccccccccCCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCD-----HFYHTPCIEPWLQLH--GTCPICRQTLHSES  147 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~--~~CP~CR~~l~~~~  147 (176)
                      .+...|.||++++..++.+ ++||+     |.||..||.+|+..+  .+||+||..+..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            3456799999999876665 68996     999999999999765  48999999987654

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.38  E-value=1.5e-13  Score=100.04  Aligned_cols=49  Identities=37%  Similarity=0.872  Sum_probs=43.2

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      ++..|+||++.+..+   +.++|||.||..||..|+..+.+||+||+++...
T Consensus        52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            346799999999765   7889999999999999999999999999988643

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.37  E-value=4.8e-13  Score=88.74  Aligned_cols=52  Identities=25%  Similarity=0.647  Sum_probs=44.3

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc------CCCCccccccccCCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL------HGTCPICRQTLHSES  147 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~------~~~CP~CR~~l~~~~  147 (176)
                      ..+...|+||++.+..+   +.++|+|.||..|+..|+..      ...||+||..+...+
T Consensus        16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecw_A           16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN   73 (85)
T ss_dssp             CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred             CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence            34567899999999766   67899999999999999977      668999999987654

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.35  E-value=7.9e-14  Score=96.24  Aligned_cols=52  Identities=27%  Similarity=0.666  Sum_probs=43.7

Q ss_pred             CCCccCccccccccCCCceEE-ecCCCcCCHHhHHHHHhcC-CCCccccccccCCCc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSESA  148 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l~~~~~  148 (176)
                      .+...|+||++.+..+   +. ++|||.||..||..|++.. ..||+||.++...+.
T Consensus        20 ~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l   73 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL   73 (100)
T ss_dssp             HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence            3456799999999754   66 8899999999999999877 699999999865443

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=6.1e-13  Score=88.22  Aligned_cols=52  Identities=25%  Similarity=0.714  Sum_probs=44.0

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc------CCCCccccccccCCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL------HGTCPICRQTLHSES  147 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~------~~~CP~CR~~l~~~~  147 (176)
                      ..+...|+||++.+...   +.++|+|.||..|+..|+..      ...||+||..+...+
T Consensus        16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            34567799999999765   66799999999999999976      678999999987654

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.34  E-value=1.6e-13  Score=90.18  Aligned_cols=52  Identities=25%  Similarity=0.588  Sum_probs=43.9

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-------CCCCccccccccCCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-------HGTCPICRQTLHSES  147 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-------~~~CP~CR~~l~~~~  147 (176)
                      ..+...|+||++.+..+   +.++|||.||..||..|++.       ...||+||..+...+
T Consensus         9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~   67 (79)
T 2egp_A            9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH   67 (79)
T ss_dssp             CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred             cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence            35567899999999765   56899999999999999976       568999999987643

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.33  E-value=1.2e-13  Score=97.96  Aligned_cols=52  Identities=25%  Similarity=0.564  Sum_probs=1.0

Q ss_pred             CCccCccccccccCC-------------C--ceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          95 SNLQCSVCWEQFTLD-------------E--AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~-------------~--~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      ++..|+||++.|...             +  .+..++|+|.||..||.+||+.+.+||+||+++..+
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~  113 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ  113 (117)
T ss_dssp             CC-----------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence            456799999998652             1  223357999999999999999999999999987543

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1.2e-12  Score=82.46  Aligned_cols=44  Identities=20%  Similarity=0.619  Sum_probs=37.7

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHh---cCCCCccc
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ---LHGTCPIC  139 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~C  139 (176)
                      ..+...|+||++.+..+   +.++|||.||..||..|++   ....||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            35567899999999865   7789999999999999997   45589998

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.1e-12  Score=85.74  Aligned_cols=53  Identities=23%  Similarity=0.563  Sum_probs=43.3

Q ss_pred             CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcC--CCCccccccccCCCccc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLH--GTCPICRQTLHSESAES  150 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~--~~CP~CR~~l~~~~~~~  150 (176)
                      ....|.||++.+..+   ... .|+|.||..||.+||+.+  .+||+||.++..+....
T Consensus        14 ~i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~   69 (74)
T 2ct0_A           14 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKS   69 (74)
T ss_dssp             SSCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCC
T ss_pred             CCCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCC
Confidence            446699999999866   333 699999999999999877  78999999887655443

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.32  E-value=3.9e-13  Score=92.29  Aligned_cols=49  Identities=31%  Similarity=0.796  Sum_probs=42.5

Q ss_pred             CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      +...|+||++.+..+   +.+ +|||.||..||..|+..+.+||+||..+...
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   70 (99)
T 2y43_A           21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP   70 (99)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred             CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence            456799999999764   566 8999999999999999889999999988753

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.32  E-value=1.1e-12  Score=88.68  Aligned_cols=49  Identities=33%  Similarity=0.624  Sum_probs=42.2

Q ss_pred             cCCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcC--CCCcccccccc
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH--GTCPICRQTLH  144 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~--~~CP~CR~~l~  144 (176)
                      ..+...|+||++.|..+   +.++ |||.||..||..|+...  ..||+||..+.
T Consensus        10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            45678899999999876   7899 99999999999999654  48999999873

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.30  E-value=6.9e-13  Score=92.52  Aligned_cols=51  Identities=27%  Similarity=0.683  Sum_probs=43.9

Q ss_pred             cCCCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      ..+...|+||++.+..+   +.+ +|||.||..||..|+..+..||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             HGGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             cCCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            34567799999999754   565 9999999999999999889999999998754

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.29  E-value=1.2e-12  Score=93.67  Aligned_cols=56  Identities=20%  Similarity=0.634  Sum_probs=47.2

Q ss_pred             CCccCccccccccCC----CceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCccc
Q psy5318          95 SNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAES  150 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~  150 (176)
                      +...|+||++.+..+    ..++.++|||.||..||.+|++.+.+||+||+.+.......
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~   65 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP   65 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence            456799999998754    45578899999999999999999999999999997665433

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.27  E-value=2.5e-12  Score=81.58  Aligned_cols=53  Identities=19%  Similarity=0.460  Sum_probs=42.1

Q ss_pred             CccCccccc-cccCCCce-EEecCCCcCCHHhHHHHHhc-CCCCccccccccCCCc
Q psy5318          96 NLQCSVCWE-QFTLDEAV-RKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSESA  148 (176)
Q Consensus        96 ~~~C~IC~~-~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~~~  148 (176)
                      +..|+||++ .+..+... +.++|||.||..||..|+.. ...||+||+.+...+.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   58 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence            466999999 77765433 45789999999999999754 4579999999876543

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=2.4e-12  Score=79.52  Aligned_cols=44  Identities=30%  Similarity=0.791  Sum_probs=36.8

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHh---cCCCCccc
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ---LHGTCPIC  139 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~C  139 (176)
                      ..+...|+||++.+..+   +.++|+|.||..||..|++   .+.+||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            34567799999999876   6689999999999999954   55689998

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.26  E-value=2.2e-12  Score=92.12  Aligned_cols=49  Identities=24%  Similarity=0.546  Sum_probs=42.1

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC-CCccccccccC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHS  145 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~l~~  145 (176)
                      .+...|+||++.+..+   +.++|||.||..||..|+..+. .||+||..+..
T Consensus        50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            3456799999999865   7789999999999999997554 89999999865

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.25  E-value=1.4e-12  Score=96.45  Aligned_cols=50  Identities=22%  Similarity=0.521  Sum_probs=43.1

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC-CCccccccccCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSE  146 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~l~~~  146 (176)
                      .+...|+||++.+..+   +.++|||.||..||..|+.... .||+||..+...
T Consensus        76 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           76 EQSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             ccCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            3456799999999765   7799999999999999998655 899999998765

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.24  E-value=4e-12  Score=88.76  Aligned_cols=50  Identities=26%  Similarity=0.674  Sum_probs=41.9

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC---CCccccccccCCCc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSESA  148 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~l~~~~~  148 (176)
                      ...|+||++.+..+   +.++|||.||..||..|+..+.   .||+||..+...+.
T Consensus        21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   73 (112)
T 1jm7_A           21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (112)
T ss_dssp             HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence            45699999999765   5689999999999999997654   89999999876543

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.23  E-value=5.6e-12  Score=84.48  Aligned_cols=51  Identities=20%  Similarity=0.127  Sum_probs=45.4

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      .+...|+||++.|.++   ++++|||.|++.||..|+..+.+||+||.++...+
T Consensus        12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~   62 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM   62 (85)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence            4567899999999887   88999999999999999998899999999886543

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.22  E-value=1.4e-12  Score=97.53  Aligned_cols=48  Identities=31%  Similarity=0.670  Sum_probs=41.0

Q ss_pred             CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhc-CCCCccccccccC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL-HGTCPICRQTLHS  145 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~  145 (176)
                      +...|+||++.+..+   +.+ +|||.||..||..|+.. +..||+||..+..
T Consensus        53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            456799999999854   555 89999999999999986 7789999999854

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.21  E-value=3.7e-12  Score=90.25  Aligned_cols=52  Identities=23%  Similarity=0.614  Sum_probs=44.1

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC-CCccccccccCCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSES  147 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~l~~~~  147 (176)
                      ..+...|+||++.+..+   +.++|||.||..||..|++... +||+||..+....
T Consensus        15 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   67 (118)
T 3hct_A           15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ   67 (118)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence            35567899999999765   7789999999999999997665 9999999987643

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.21  E-value=6.8e-12  Score=86.62  Aligned_cols=52  Identities=21%  Similarity=0.142  Sum_probs=46.0

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA  148 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~  148 (176)
                      .+...|+||++.|.++   ++++|||.|++.||..|+..+.+||+||.++...+.
T Consensus        27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L   78 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESML   78 (100)
T ss_dssp             STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred             cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence            4567899999999887   889999999999999999988899999999876543

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.19  E-value=9.9e-12  Score=85.50  Aligned_cols=52  Identities=15%  Similarity=0.068  Sum_probs=46.0

Q ss_pred             CCCccCccccccccCCCceEEecCC-CcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCD-HFYHTPCIEPWLQLHGTCPICRQTLHSESA  148 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~-H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~  148 (176)
                      .+...|+||++.|.++   ++++|| |.|++.||..|+..+.+||+||.++...+.
T Consensus        20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L   72 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI   72 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred             cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence            4567899999999887   889999 999999999999888899999999876543

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.18  E-value=7.6e-12  Score=89.42  Aligned_cols=54  Identities=20%  Similarity=0.669  Sum_probs=45.5

Q ss_pred             CCCccCccccccccCC----CceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          94 DSNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      ++...|+||++.+...    ...+.++|||.||..||.+|++.+.+||+||..+...+
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  127 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR  127 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence            4567799999998653    34477889999999999999999999999999987654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.17  E-value=8.7e-12  Score=91.19  Aligned_cols=52  Identities=21%  Similarity=0.475  Sum_probs=43.8

Q ss_pred             ccCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC-CCccccccccCC
Q psy5318          92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSE  146 (176)
Q Consensus        92 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~l~~~  146 (176)
                      ..++...|+||++.+..+   +.++|||.||..||..|++... +||+||.++..+
T Consensus        27 ~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   79 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE   79 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred             cCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence            345677899999999876   7789999999999999997665 899999986433

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.16  E-value=5.2e-12  Score=88.90  Aligned_cols=48  Identities=33%  Similarity=0.780  Sum_probs=41.6

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccccC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHS  145 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~  145 (176)
                      ++..|+||++.+..+   +.++|||.||..||..|+.. ...||+||..+..
T Consensus        14 ~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           14 SECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            356799999999866   77899999999999999966 6689999999864

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.15  E-value=1.5e-11  Score=86.68  Aligned_cols=50  Identities=22%  Similarity=0.587  Sum_probs=42.9

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccccCCC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSES  147 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~~  147 (176)
                      +...|+||++.+..+   +.++|||.||..||..|+.. ..+||+||..+...+
T Consensus        22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            356799999999765   66899999999999999986 679999999987654

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.14  E-value=6.2e-11  Score=78.16  Aligned_cols=55  Identities=22%  Similarity=0.559  Sum_probs=42.1

Q ss_pred             cCCCccCccccccccCCCceEEe--cCCCcCCHHhHHHHHh-cCCCCccccccccCCCc
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSESA  148 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~~~~  148 (176)
                      .+++..|+||++.+...+. ..+  +|||.||..|+..++. ....||.||+.+.....
T Consensus         8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            3456789999998864332 234  4999999999999874 45689999999876544

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.12  E-value=1.1e-11  Score=76.53  Aligned_cols=47  Identities=28%  Similarity=0.552  Sum_probs=39.6

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      .+...|+||++.+..+   +.++|+|.||..|+..|   ...||+||+.+...
T Consensus         4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            4567799999999866   77899999999999773   56899999988654

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.11  E-value=2.3e-11  Score=77.19  Aligned_cols=47  Identities=19%  Similarity=0.454  Sum_probs=39.8

Q ss_pred             CCccCccccccccCCCceEEe--cCCCc-CCHHhHHHHHhcCCCCcccccccc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKL--PCDHF-YHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      ++..|.||++...+.   ..+  ||||. ||..|+..|.+.+..||+||+++.
T Consensus         7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            445699999987644   555  99999 899999999988889999999875

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.08  E-value=1.8e-11  Score=86.46  Aligned_cols=47  Identities=23%  Similarity=0.606  Sum_probs=40.4

Q ss_pred             CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      +...|+||++.|..+   +.+ +|||.||..||..|+.  ..||+||..+...
T Consensus        21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (117)
T ss_dssp             HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence            456799999999866   667 8999999999999987  7899999998543

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.07  E-value=4.8e-11  Score=75.46  Aligned_cols=47  Identities=19%  Similarity=0.443  Sum_probs=39.3

Q ss_pred             CCccCccccccccCCCceEEe--cCCCc-CCHHhHHHHHhcCCCCcccccccc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKL--PCDHF-YHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      ....|.||++...+.   ..+  ||||. ||..|+..|.+....||+||+++.
T Consensus         6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            345699999986543   445  99998 999999999988889999999885

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.07  E-value=7.1e-11  Score=99.07  Aligned_cols=50  Identities=26%  Similarity=0.642  Sum_probs=43.1

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHh-cCCCCccccccccCCCc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSESA  148 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~~~~  148 (176)
                      ...|+||++.+...   +.+||||.||..|+..|+. ...+||+||.++.....
T Consensus       332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~  382 (389)
T 2y1n_A          332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP  382 (389)
T ss_dssp             SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred             CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence            46799999998654   7899999999999999998 67899999999876543

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.06  E-value=1.5e-11  Score=80.15  Aligned_cols=44  Identities=23%  Similarity=0.619  Sum_probs=37.7

Q ss_pred             CCccCccccccccCCCceEEecCCCc-CCHHhHHHHHhcCCCCccccccccC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      ++..|+||++.+.+.   +.+||||. ||..|+..|    ..||+||..+..
T Consensus        23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            345699999988654   77899999 999999988    789999998864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.99  E-value=1.4e-10  Score=92.51  Aligned_cols=51  Identities=24%  Similarity=0.218  Sum_probs=43.6

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC-CCCccccccccCCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSES  147 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l~~~~  147 (176)
                      .....|+||++.+.++   ++++|||.||..||..|+..+ .+||+||.++...+
T Consensus       206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~  257 (281)
T 2c2l_A          206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ  257 (281)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred             CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence            4567899999999877   889999999999999999764 45999999986543

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.3e-10  Score=79.19  Aligned_cols=51  Identities=24%  Similarity=0.520  Sum_probs=41.5

Q ss_pred             CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcC------CCCcc--cccc-ccCCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH------GTCPI--CRQT-LHSES  147 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~------~~CP~--CR~~-l~~~~  147 (176)
                      .+...|+||++.|.++   ++++ |||.|+..||..|+..+      .+||+  |+.. +...+
T Consensus         5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~   65 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD   65 (94)
T ss_dssp             SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred             CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence            3467799999999876   7786 99999999999999754      48999  9876 55443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.97  E-value=1.7e-10  Score=86.49  Aligned_cols=51  Identities=22%  Similarity=0.573  Sum_probs=43.5

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC-CCCccccccccCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSE  146 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l~~~  146 (176)
                      ..+...|+||++.+..+   +.++|||.||..||..|++.. .+||+||..+...
T Consensus        15 ~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            45667899999999866   678999999999999999754 4999999998654

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.89  E-value=6.3e-10  Score=84.26  Aligned_cols=53  Identities=23%  Similarity=0.213  Sum_probs=44.6

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC-CCCccccccccCCCc
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSESA  148 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l~~~~~  148 (176)
                      ..+...|+||++.|.++   ++++|||.|+..||..|+..+ .+||+||.++...+.
T Consensus       103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L  156 (179)
T 2f42_A          103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL  156 (179)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence            34567899999999877   888999999999999999764 479999999865543

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.83  E-value=7.5e-10  Score=91.09  Aligned_cols=52  Identities=27%  Similarity=0.745  Sum_probs=39.5

Q ss_pred             CCCccCccccccccCCCce-----EEecCCCcCCHHhHHHHHhcC-----------CCCccccccccC
Q psy5318          94 DSNLQCSVCWEQFTLDEAV-----RKLPCDHFYHTPCIEPWLQLH-----------GTCPICRQTLHS  145 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~-----~~lpC~H~Fh~~Ci~~wl~~~-----------~~CP~CR~~l~~  145 (176)
                      +...+|+||++.+..+..+     ....|+|.||..|+.+||+..           ++||+||+++..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            4566799999998763221     123599999999999999642           469999998863

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=1.3e-09  Score=70.97  Aligned_cols=43  Identities=23%  Similarity=0.637  Sum_probs=35.8

Q ss_pred             CccCccccccccCCCceEEecCCCc-CCHHhHHHHHhcCCCCccccccccC
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      ...|+||++.+...   +.+||||. ||..|+..    ...||+||.++..
T Consensus        25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence            34599999998655   67899999 99999964    4789999998865

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=4.2e-09  Score=67.42  Aligned_cols=46  Identities=28%  Similarity=0.641  Sum_probs=37.8

Q ss_pred             CCCccCccccccccCCCceEEecCCCc-CCHHhHHHHHhcCCCCccccccccCC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      .+...|.||++...+.   +.+||+|. ||..|+..    ...||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred             CCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence            3456799999987654   88899999 99999984    47899999988654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.77  E-value=4e-09  Score=65.95  Aligned_cols=48  Identities=25%  Similarity=0.674  Sum_probs=36.9

Q ss_pred             CCCccCccccccccCCCceEEecCC--C---cCCHHhHHHHHhc--CCCCcccccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCD--H---FYHTPCIEPWLQL--HGTCPICRQTLH  144 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~--H---~Fh~~Ci~~wl~~--~~~CP~CR~~l~  144 (176)
                      ++...|.||+++..  +. .++||.  +   .||..|+.+|+..  +.+||+||.++.
T Consensus         4 ~~~~~CrIC~~~~~--~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELG--NE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECS--CC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCC--Cc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            34567999999743  33 358854  5   9999999999964  568999999875

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.75  E-value=3e-09  Score=66.72  Aligned_cols=52  Identities=13%  Similarity=0.236  Sum_probs=45.2

Q ss_pred             ccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccccCCCcccC
Q psy5318          97 LQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESL  151 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~  151 (176)
                      ..|+||++.+.++   +++ +|||+|.+.||.+|++.+.+||+.+.++..++....
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~   56 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI   56 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence            4699999999866   777 799999999999999888899999999987765544

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.72  E-value=4.4e-09  Score=71.27  Aligned_cols=51  Identities=20%  Similarity=0.669  Sum_probs=39.5

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc--------CCCCcc--cccc--ccC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL--------HGTCPI--CRQT--LHS  145 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~--CR~~--l~~  145 (176)
                      +..+|+||++.+..+......+|+|.||..|+..+++.        ...||.  |+..  +..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~   66 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE   66 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence            35679999999876644444579999999999999853        137999  9988  544

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.71  E-value=3.3e-09  Score=69.90  Aligned_cols=44  Identities=27%  Similarity=0.671  Sum_probs=36.7

Q ss_pred             CccCccccccccCCCceEEecCCCc-CCHHhHHHHHhcCCCCccccccccCC
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHSE  146 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~~~  146 (176)
                      ...|.||++.+.+.   +.+||||. ||..|+..|    ..||+||..+...
T Consensus        18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            34699999987654   78899999 999999876    3899999988654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.63  E-value=8.9e-09  Score=81.94  Aligned_cols=53  Identities=21%  Similarity=0.493  Sum_probs=42.4

Q ss_pred             CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC--CCCcc--ccccccCCCc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH--GTCPI--CRQTLHSESA  148 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~--~~CP~--CR~~l~~~~~  148 (176)
                      .....|+||++.|..+  |+...|||.||+.||..|+..+  .+||+  ||+.+...+.
T Consensus       179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL  235 (267)
T 3htk_C          179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF  235 (267)
T ss_dssp             BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred             ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence            4567799999999865  3334899999999999999764  37999  9998865543

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.60  E-value=5.5e-09  Score=86.70  Aligned_cols=45  Identities=27%  Similarity=0.688  Sum_probs=38.7

Q ss_pred             CCCccCccccccccCCCceEEecCCCc-CCHHhHHHHHhcCCCCccccccccC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      .+...|+||++.+...   +.+||||. ||..|+..|    ..||+||..+..
T Consensus       293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            4567899999998755   77899999 999999987    689999998854

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.35  E-value=2.4e-07  Score=63.04  Aligned_cols=48  Identities=21%  Similarity=0.445  Sum_probs=38.4

Q ss_pred             cCccccccccCCCceEEecCCCcCCHHhHHHHHh-cCCCCccccccccCCC
Q psy5318          98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSES  147 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~~~  147 (176)
                      .|.+|--.+.  ...+.+||+|+||..|+..|.+ ..++||.|+.++..-+
T Consensus         3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe   51 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE   51 (101)
T ss_dssp             BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred             ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence            4788866655  4568889999999999999984 5679999999886543

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=98.27  E-value=1e-06  Score=69.52  Aligned_cols=52  Identities=21%  Similarity=0.569  Sum_probs=42.9

Q ss_pred             CCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC--CCccccccccCCCcc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG--TCPICRQTLHSESAE  149 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~--~CP~CR~~l~~~~~~  149 (176)
                      ....|.||.+.+..+   ...+ |+|.||..|+..|++.+.  .||.|+..++.+.+.
T Consensus       179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~  233 (238)
T 3nw0_A          179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK  233 (238)
T ss_dssp             TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred             CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence            356799999998876   5565 999999999999997655  899999988766443

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=96.31  E-value=0.003  Score=41.35  Aligned_cols=34  Identities=24%  Similarity=0.685  Sum_probs=24.2

Q ss_pred             ccCCCccCccccccccCCCceEEec---CCCcCCHHhHHHH
Q psy5318          92 QIDSNLQCSVCWEQFTLDEAVRKLP---CDHFYHTPCIEPW  129 (176)
Q Consensus        92 ~~~~~~~C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~w  129 (176)
                      ....+..|.||- .+...   ..+|   |+.+||..|+.+.
T Consensus        11 ~~~~D~~C~VC~-~~t~~---~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           11 PVVNDEMCDVCE-VWTAE---SLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCSCCCTTTC-CCCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCCCcccCccc-ccccc---ceeccccccccccHhhcccc
Confidence            344677899994 34333   2344   8999999999996

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.58  E-value=0.006  Score=40.96  Aligned_cols=34  Identities=18%  Similarity=0.458  Sum_probs=25.1

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHH
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPW  129 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~w  129 (176)
                      +..|.||.+.+.......-+.|+|.||..|+..+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            4679999986433322233789999999999983

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=95.14  E-value=0.014  Score=36.57  Aligned_cols=44  Identities=23%  Similarity=0.480  Sum_probs=31.6

Q ss_pred             CCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQT  142 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~  142 (176)
                      ....|.||.+.    ..+..-. |...||..|+.+.|....    .||.|+..
T Consensus        11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~   59 (66)
T 2lri_C           11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD   59 (66)
T ss_dssp             TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred             CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence            34569999753    2334444 999999999998875543    69999754

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=93.69  E-value=0.017  Score=35.60  Aligned_cols=49  Identities=27%  Similarity=0.565  Sum_probs=33.9

Q ss_pred             CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHh-----cCCCCcccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQ-----LHGTCPICRQT  142 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~  142 (176)
                      ++...|+||...+......+.-. |...||..|+.--..     ..-.||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            45567999998876544455444 999999999854321     23479999764

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=92.98  E-value=0.05  Score=33.29  Aligned_cols=45  Identities=27%  Similarity=0.677  Sum_probs=30.8

Q ss_pred             CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQT  142 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~  142 (176)
                      ..+..|.||...    ..+..-. |...||..|+.+-+....    .||.|+..
T Consensus         9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            445679999863    2333333 999999999987553322    69999753

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=91.55  E-value=0.035  Score=36.66  Aligned_cols=53  Identities=21%  Similarity=0.516  Sum_probs=35.1

Q ss_pred             CCccCccccccccC-CCceEEec-CCCcCCHHhHHHHHhc--------CCCCccccccccCCC
Q psy5318          95 SNLQCSVCWEQFTL-DEAVRKLP-CDHFYHTPCIEPWLQL--------HGTCPICRQTLHSES  147 (176)
Q Consensus        95 ~~~~C~IC~~~~~~-~~~~~~lp-C~H~Fh~~Ci~~wl~~--------~~~CP~CR~~l~~~~  147 (176)
                      .+..|.||...-.. ...+.... |...||..|+.+-|..        .=.|+.|+.......
T Consensus        15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~   77 (88)
T 1wev_A           15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA   77 (88)
T ss_dssp             HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred             CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence            35569999876332 22334444 9999999999875532        126999988765443

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.47  E-value=0.063  Score=35.70  Aligned_cols=50  Identities=26%  Similarity=0.409  Sum_probs=33.3

Q ss_pred             CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQTLH  144 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~l~  144 (176)
                      .+...|.||...-.. +.++... |...||..|+.+-|....    .||.|+..-.
T Consensus        14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~   68 (92)
T 2e6r_A           14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAEC   68 (92)
T ss_dssp             CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred             cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCccc
Confidence            455679999875432 2334444 999999999975443322    5999987543

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=91.36  E-value=0.12  Score=47.86  Aligned_cols=52  Identities=17%  Similarity=0.157  Sum_probs=44.9

Q ss_pred             CCCccCccccccccCCCceEEecCC-CcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCD-HFYHTPCIEPWLQLHGTCPICRQTLHSESA  148 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~-H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~  148 (176)
                      .+...|+|-++.+.++   +++|.| +.|-+.+|.+|+..+.+||.=|.++...+.
T Consensus       889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l  941 (968)
T 3m62_A          889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV  941 (968)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred             cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence            3466799999999887   889987 589999999999989999999999876543

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=91.35  E-value=0.064  Score=40.27  Aligned_cols=47  Identities=23%  Similarity=0.505  Sum_probs=34.0

Q ss_pred             ccCccccccccCCCc---eEEec-CCCcCCHHhHHH------HHh-----cCCCCccccccc
Q psy5318          97 LQCSVCWEQFTLDEA---VRKLP-CDHFYHTPCIEP------WLQ-----LHGTCPICRQTL  143 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~---~~~lp-C~H~Fh~~Ci~~------wl~-----~~~~CP~CR~~l  143 (176)
                      ..|+||...+..++.   .+... |...||..|+.-      -+.     ..-.||.|+..-
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            459999998887653   55555 999999999832      111     145899998754

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=90.59  E-value=0.33  Score=31.02  Aligned_cols=47  Identities=17%  Similarity=0.545  Sum_probs=31.1

Q ss_pred             CccCccccccccCCCceEEec-CCCcCCHHhHHHHH---h--cCCCCccccccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL---Q--LHGTCPICRQTL  143 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl---~--~~~~CP~CR~~l  143 (176)
                      ...| ||...+......+... |...||..|+.--.   .  ..-.||.|+...
T Consensus        12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            3446 8988775444444444 99999999994221   1  334799998764

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=90.59  E-value=0.094  Score=30.65  Aligned_cols=43  Identities=26%  Similarity=0.629  Sum_probs=28.1

Q ss_pred             cCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCccccc
Q psy5318          98 QCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQ  141 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~  141 (176)
                      .|.||...-.. +.+..- .|...||..|+.+=+....    .||.|+.
T Consensus         2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            48889765322 233333 3999999999976443322    5999965

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=90.51  E-value=0.062  Score=34.10  Aligned_cols=50  Identities=22%  Similarity=0.522  Sum_probs=33.4

Q ss_pred             CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhc----CCCCcccccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQL----HGTCPICRQTLH  144 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~----~~~CP~CR~~l~  144 (176)
                      .+...|.||..... ++..+... |...||..|+..-...    .-.||.|+..+.
T Consensus        16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~   70 (75)
T 2k16_A           16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK   70 (75)
T ss_dssp             CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred             CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence            34456999977643 33344444 9999999999754432    226999987664

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=88.31  E-value=0.18  Score=33.21  Aligned_cols=53  Identities=21%  Similarity=0.389  Sum_probs=33.5

Q ss_pred             CCCccCcccccccc-CCCceEEec-CCCcCCHHhHHHHHhcCC--CCccccccccCC
Q psy5318          94 DSNLQCSVCWEQFT-LDEAVRKLP-CDHFYHTPCIEPWLQLHG--TCPICRQTLHSE  146 (176)
Q Consensus        94 ~~~~~C~IC~~~~~-~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~--~CP~CR~~l~~~  146 (176)
                      +.+..|.||...-. ..+.++... |.-.||..|+..-+....  .||.|.......
T Consensus        23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~   79 (88)
T 2l43_A           23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP   79 (88)
T ss_dssp             CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred             CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence            45677999987532 222333333 999999999975332222  699997765433

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.25  E-value=0.053  Score=32.54  Aligned_cols=44  Identities=30%  Similarity=0.711  Sum_probs=29.5

Q ss_pred             CCCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQ  141 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~  141 (176)
                      ..+..|.||...   + .++.- .|...||..|+.+-+....    .||.|+.
T Consensus         7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            345669999874   2 33333 3999999999986554322    5888854

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=88.23  E-value=0.09  Score=39.96  Aligned_cols=46  Identities=24%  Similarity=0.512  Sum_probs=31.5

Q ss_pred             CCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccccc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQTLH  144 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~l~  144 (176)
                      .+..|.+|...   + .+.... |...||..|+.+.+....    .||.|+..-.
T Consensus         6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~   56 (207)
T 3u5n_A            6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK   56 (207)
T ss_dssp             SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred             CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence            45569999753   2 233333 999999999987664332    6999987543

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=87.85  E-value=0.35  Score=35.85  Aligned_cols=45  Identities=24%  Similarity=0.538  Sum_probs=31.4

Q ss_pred             CccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQTLH  144 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~l~  144 (176)
                      +..|.+|...   + .+.... |...||..|+.+-+....    .||.|+..-.
T Consensus         4 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~   53 (184)
T 3o36_A            4 EDWCAVCQNG---G-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK   53 (184)
T ss_dssp             CSSCTTTCCC---S-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred             CCccccCCCC---C-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence            4569999754   2 233343 999999999977664332    6999987543

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=87.62  E-value=0.086  Score=32.22  Aligned_cols=44  Identities=27%  Similarity=0.542  Sum_probs=29.3

Q ss_pred             CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQT  142 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~  142 (176)
                      .+..|.||.+.   + .+..- .|...||..|+.+-+....    .||.|+..
T Consensus         8 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~   56 (61)
T 1mm2_A            8 HMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence            45669999763   2 22222 3999999999986544322    59999764

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=87.56  E-value=0.28  Score=32.34  Aligned_cols=45  Identities=29%  Similarity=0.602  Sum_probs=31.4

Q ss_pred             CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQT  142 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~  142 (176)
                      ..+..|.+|...   + .+.... |...||..|+.+=+....    .||.|+..
T Consensus        23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~   72 (88)
T 1fp0_A           23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   72 (88)
T ss_dssp             SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence            345679999864   2 233333 889999999987664433    59999764

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=87.06  E-value=0.14  Score=35.04  Aligned_cols=44  Identities=32%  Similarity=0.628  Sum_probs=29.0

Q ss_pred             cCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCccccc
Q psy5318          98 QCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQ  141 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~  141 (176)
                      .|.||...-.+.+.+..-. |...||..|+.+-|....    .||.|+.
T Consensus        63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~  111 (112)
T 3v43_A           63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP  111 (112)
T ss_dssp             CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred             ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence            5888876433333344444 999999999976554322    6999975

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=86.89  E-value=0.088  Score=32.48  Aligned_cols=50  Identities=22%  Similarity=0.492  Sum_probs=32.5

Q ss_pred             CCCccCccccccccC-CCceEEec-CCCcCCHHhHHHHHhc-------CCCCccccccc
Q psy5318          94 DSNLQCSVCWEQFTL-DEAVRKLP-CDHFYHTPCIEPWLQL-------HGTCPICRQTL  143 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~-~~~~~~lp-C~H~Fh~~Ci~~wl~~-------~~~CP~CR~~l  143 (176)
                      ..+..|.||...... ...+..-. |...||..|+.+-+..       .=.||.|+...
T Consensus         4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~   62 (66)
T 2yt5_A            4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT   62 (66)
T ss_dssp             CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence            345679999876432 23334334 9999999999864421       12699997654

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=86.89  E-value=0.12  Score=35.17  Aligned_cols=48  Identities=21%  Similarity=0.520  Sum_probs=33.4

Q ss_pred             ccCccccccccCCCceEEe--cCCCcCCHHhHHHH------H----hcCCCCcccccccc
Q psy5318          97 LQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPW------L----QLHGTCPICRQTLH  144 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~w------l----~~~~~CP~CR~~l~  144 (176)
                      ..|.||...+......+..  .|...||..|+.--      +    ...-.||.|+....
T Consensus         4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~   63 (105)
T 2xb1_A            4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE   63 (105)
T ss_dssp             CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred             CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence            4599999988665555555  48999999998321      1    02337999987543

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=86.42  E-value=0.21  Score=31.51  Aligned_cols=49  Identities=22%  Similarity=0.436  Sum_probs=31.5

Q ss_pred             CCCccCccccccc-cCCCceEEec-CCCcCCHHhHHHHHhcCC--CCcccccc
Q psy5318          94 DSNLQCSVCWEQF-TLDEAVRKLP-CDHFYHTPCIEPWLQLHG--TCPICRQT  142 (176)
Q Consensus        94 ~~~~~C~IC~~~~-~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~--~CP~CR~~  142 (176)
                      ..+..|.||.+.- ...+..+.-. |.-.||..|+..-.....  .||.|+..
T Consensus        14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~   66 (71)
T 2ku3_A           14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS   66 (71)
T ss_dssp             CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence            4566799998753 2333444444 999999999975321112  59988754

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=86.03  E-value=0.079  Score=32.18  Aligned_cols=45  Identities=29%  Similarity=0.702  Sum_probs=30.9

Q ss_pred             CccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCcccccccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQTLH  144 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~l~  144 (176)
                      +..|.||...   + .+..- .|...||..|+.+-+....    .||.|+....
T Consensus         5 ~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~   54 (60)
T 2puy_A            5 EDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML   54 (60)
T ss_dssp             CSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred             CCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence            4569999874   2 33333 3999999999986554322    5999977654

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=85.34  E-value=0.59  Score=27.36  Aligned_cols=42  Identities=17%  Similarity=0.327  Sum_probs=27.6

Q ss_pred             CccccccccCCCceEEe--cCCCcCCHHhHHHH----HhcCCCCcccc
Q psy5318          99 CSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPW----LQLHGTCPICR  140 (176)
Q Consensus        99 C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~w----l~~~~~CP~CR  140 (176)
                      |.+|...+..+...+.-  .|...||..|+.--    ...+-.||.|+
T Consensus         5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            77888877555444444  38889999998421    12455799885

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=84.31  E-value=0.23  Score=30.71  Aligned_cols=44  Identities=25%  Similarity=0.594  Sum_probs=30.0

Q ss_pred             CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQT  142 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~  142 (176)
                      .+..|.||.+.   + .+... .|...||..|+.+-+....    .||.|...
T Consensus         7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~   55 (66)
T 1xwh_A            7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA   55 (66)
T ss_dssp             CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred             CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence            45669999864   2 33333 3999999999986543322    59999754

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=84.12  E-value=0.67  Score=28.58  Aligned_cols=33  Identities=21%  Similarity=0.620  Sum_probs=24.4

Q ss_pred             CCCccCccccccccCCCceEEe--cCCCcCCHHhH
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCI  126 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci  126 (176)
                      +....|.+|...+..+...+..  .|...||..|+
T Consensus         6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv   40 (65)
T 2vpb_A            6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT   40 (65)
T ss_dssp             ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred             CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence            3455699999988766655555  49999999998

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=82.75  E-value=1.1  Score=29.02  Aligned_cols=39  Identities=21%  Similarity=0.481  Sum_probs=29.5

Q ss_pred             CCCccCccccccccCCCceEEec--CCCcCCHHhHHHHHhcC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLP--CDHFYHTPCIEPWLQLH  133 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~~~  133 (176)
                      ...+.|.+|.+.+++. ..++.|  =.|.||..|-+..++..
T Consensus        13 ~a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~q   53 (93)
T 2cs3_A           13 SGPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKAQ   53 (93)
T ss_dssp             CCSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHHH
T ss_pred             CCeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHhc
Confidence            3456799999999865 334455  57999999999988653

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=81.46  E-value=0.93  Score=37.41  Aligned_cols=50  Identities=24%  Similarity=0.512  Sum_probs=32.4

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHH---hcCC--CCccccccccCCCc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL---QLHG--TCPICRQTLHSESA  148 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl---~~~~--~CP~CR~~l~~~~~  148 (176)
                      .+.|+|-...+..+  ++-..|.|.-|.+ +..||   ....  .||+|.+.+..++.
T Consensus       215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~dL  269 (360)
T 4fo9_A          215 SLMCPLGKMRLTIP--CRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYESL  269 (360)
T ss_dssp             ESBCTTTCSBCSSE--EEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred             eeeCCCccceeccC--CcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence            45699888887644  5556699985543 23333   2233  69999998865543

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=81.41  E-value=0.32  Score=35.67  Aligned_cols=47  Identities=23%  Similarity=0.526  Sum_probs=31.5

Q ss_pred             CCccCccccccccCCCceEEec-CCCcCCHHhHHHHH-----hcCCCCcccccc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL-----QLHGTCPICRQT  142 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl-----~~~~~CP~CR~~  142 (176)
                      +...| +|......+...+... |...||..|+.--.     ...-.||.|+..
T Consensus         7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~   59 (174)
T 2ri7_A            7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST   59 (174)
T ss_dssp             CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred             CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence            45568 9988765444455554 99999999994211     123379999874

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=80.79  E-value=0.23  Score=31.21  Aligned_cols=48  Identities=21%  Similarity=0.272  Sum_probs=30.8

Q ss_pred             CCccCccccccccCCCceEEec-CCCcCCHHhHHHHH----hcCCCCccccccc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL----QLHGTCPICRQTL  143 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl----~~~~~CP~CR~~l  143 (176)
                      ....| ||......++..+... |...||..|+.---    .....||.|+..-
T Consensus        15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~   67 (72)
T 1wee_A           15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS   67 (72)
T ss_dssp             SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred             cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence            34558 7987654444444444 99999999985421    1233699997643

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=80.48  E-value=0.42  Score=32.46  Aligned_cols=37  Identities=24%  Similarity=0.453  Sum_probs=24.7

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHh
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ  131 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~  131 (176)
                      .+..|.||.+.-...+-+.--.|...||..|+...+.
T Consensus         6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~   42 (111)
T 2ysm_A            6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT   42 (111)
T ss_dssp             CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred             CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence            4567999977633222222234999999999987653

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=80.24  E-value=0.31  Score=32.61  Aligned_cols=43  Identities=19%  Similarity=0.333  Sum_probs=27.9

Q ss_pred             ccCccccccccCCCceEEec-CCCcCCHHhHHHHHhc---CCCCccccc
Q psy5318          97 LQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQL---HGTCPICRQ  141 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~---~~~CP~CR~  141 (176)
                      ..| ||......+ ..+... |...||..|+..-+..   .-.||.|+.
T Consensus        29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~   75 (98)
T 2lv9_A           29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP   75 (98)
T ss_dssp             CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred             EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence            457 887665433 333333 9999999999653322   237999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	2e-18
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	3e-15
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	3e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-12
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-10
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-10
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	4e-10
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-09
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	3e-08
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	3e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	8e-08
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	6e-07
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	1e-04
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	9e-04
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	0.004

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 72.6 bits (178), Expect = 2e-18
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 93  IDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTL 143
           +D  ++C+VC  +    E  R LP C H +H  C++ WL  H TCP+CR T+
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 65.0 bits (158), Expect = 3e-15
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 98  QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145
           +C +C E  +       LPC H +   CI  W++ + TCP+C+  + S
Sbjct: 7   RCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 3e-12
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 15/58 (25%)

Query: 99  CSVCWEQFT---------------LDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
           C++C                     +  V    C+H +H  CI  WL+    CP+  +
Sbjct: 24  CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 81

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 3e-12
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 92  QIDSNLQ-CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHS 145
           ++ S  Q C +C E     + V+  PC H   T C+  W +  G  CP CR  +  
Sbjct: 18  EMGSTFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 70

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 2e-10
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 93  IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSES 147
           +   L+C +C E     E V    CDH +   C+   L        CP+C+  +   S
Sbjct: 18  MQKILECPICLELIK--EPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 2e-10
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 97  LQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLHGT-CPICRQTLHSE 146
           ++C +C E   +D+       C +     C           CP CR+    +
Sbjct: 1   VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 4e-10
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 96  NLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPWLQL-HGTCPICRQTLH 144
           +  C  C      + +++ +   C H     C++       G CP C   L 
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 2e-09
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 97  LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
           L+C  C  +    +  + LPC H   + C+E        CPIC+   
Sbjct: 7   LRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 46.0 bits (108), Expect = 3e-08
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 4/53 (7%)

Query: 94  DSNLQCSVCWEQFTLDE--AVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQT 142
           +    C +C E+   +   A          H  C+  WL +     C IC   
Sbjct: 4   EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 3e-08
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 92  QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147
           +++  L+CS C         +    C+H + + C+     +   CP+C      + 
Sbjct: 18  RLEKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDC--IGTGCPVCYTPAWIQD 69

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 8e-08
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 91  AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSESAE 149
           A    ++ C +C           +  C H +   CI   L++ G  CP CR        E
Sbjct: 18  AHFVKSISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74

Query: 150 S 150
           S
Sbjct: 75  S 75

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 6e-07
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 20/85 (23%)

Query: 76  STDKIKQIPVAHITKAQIDSNLQCSVCWEQFTL---------------DEAVRKLPCDHF 120
           S+ + +Q+   +  + ++     C +C E+  +                   R   C H 
Sbjct: 5   SSGEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA 64

Query: 121 YHTPCIEPWLQ-----LHGTCPICR 140
           +H  C+              CP C+
Sbjct: 65  FHLLCLLAMYCNGNKDGSLQCPSCK 89

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 8/56 (14%)

Query: 98  QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--------TCPICRQTLHS 145
            C +C  ++ +++      C   + T C++ +++L          +CP        
Sbjct: 7   GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (83), Expect = 1e-04
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 97  LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147
           + C++  +       V        +    +E +++  G  PI  + L  E 
Sbjct: 1   MLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 49

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.7 bits (79), Expect = 9e-04
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 4/57 (7%)

Query: 92  QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSES 147
           +     +C +  E     + V  +     Y    I+ WL     TCP  ++TL    
Sbjct: 4   EFPEYFRCPISLELMK--DPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.9 bits (74), Expect = 0.004
 Identities = 13/54 (24%), Positives = 16/54 (29%), Gaps = 4/54 (7%)

Query: 90  KAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQT 142
           K  I   L   + +E           P    Y    IE  LQ  G   P+ R  
Sbjct: 1   KRDIPDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSP 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.71
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.56
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.49
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.49
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.47
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.47
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.46
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.45
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.34
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.34
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.34
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.24
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.21
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.2
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.13
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.99
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.62
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	95.29
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	94.22
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	94.18
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	93.96
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	93.61
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	91.13
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	89.2
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	88.11
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	85.02
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	84.67
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	82.4
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	81.74

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.71  E-value=1.9e-18  Score=105.62  Aligned_cols=51  Identities=41%  Similarity=1.003  Sum_probs=46.1

Q ss_pred             CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLH  144 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~  144 (176)
                      +++.+|+||+++|..++.+.+++ |+|.||..||.+|++.+.+||+||+++.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            45567999999999998888886 9999999999999999999999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.56  E-value=8.4e-16  Score=97.61  Aligned_cols=48  Identities=31%  Similarity=0.789  Sum_probs=41.6

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      ...|+||++.+..  .++.++|+|.||..||.+|++.+.+||+||.++..
T Consensus         5 ~d~C~IC~~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCccCCcCccC--CcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            3459999999864  45678999999999999999999999999998753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.1e-15  Score=90.06  Aligned_cols=48  Identities=23%  Similarity=0.535  Sum_probs=40.2

Q ss_pred             cCccccccccCCCce-EEecCCCcCCHHhHHHHHhc-CCCCccccccccC
Q psy5318          98 QCSVCWEQFTLDEAV-RKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHS  145 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~  145 (176)
                      +|+||+++|..++.. ..++|+|.||..|+.+|++. +.+||+||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            599999999876544 44589999999999999975 4579999999864

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-14  Score=94.63  Aligned_cols=52  Identities=25%  Similarity=0.599  Sum_probs=43.0

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccccCCCccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSESAES  150 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~~~~~  150 (176)
                      ...|+||++.+...   ++++|||.||..||..|+.. +.+||+||..+.......
T Consensus        23 ~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~   75 (79)
T d1fbva4          23 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV   75 (79)
T ss_dssp             TTBCTTTSSSBCCE---ECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCSS
T ss_pred             CCCCccCCCcCCCe---EEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCceee
Confidence            34699999988654   78899999999999999974 568999999997665443

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-14  Score=96.57  Aligned_cols=50  Identities=24%  Similarity=0.538  Sum_probs=41.6

Q ss_pred             CccCccccccccCCC---------------ceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318          96 NLQCSVCWEQFTLDE---------------AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS  145 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~  145 (176)
                      +..|+||++.+....               .+..++|+|.||..||.+||+.+.+||+||+++..
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            445999998775432               35777899999999999999999999999998753

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.5e-14  Score=90.92  Aligned_cols=52  Identities=19%  Similarity=0.458  Sum_probs=40.6

Q ss_pred             CCccCccccccccCC-C-ceEEecCCCcCCHHhHHHHHhc-CCCCccccccccCC
Q psy5318          95 SNLQCSVCWEQFTLD-E-AVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSE  146 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~-~-~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~  146 (176)
                      ++..|+||++.+..+ + .+.+++|+|.||..||..|++. +.+||+||+++...
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            356799999976433 2 3456689999999999999965 55899999988654

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=8.3e-15  Score=89.44  Aligned_cols=52  Identities=15%  Similarity=0.249  Sum_probs=45.1

Q ss_pred             cCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCccccccccCCCcccCC
Q psy5318          98 QCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLG  152 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~~  152 (176)
                      .|+||++.+.++   +.++ |||.||..||.+|++.+++||+||+++..++....+
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLipik   54 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV   54 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhceeCC
Confidence            599999999865   6665 999999999999999999999999999887765543

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=4.9e-14  Score=97.77  Aligned_cols=52  Identities=21%  Similarity=0.528  Sum_probs=40.7

Q ss_pred             CccCccccccccCC---------------CceEEecCCCcCCHHhHHHHHhcC-----CCCccccccccCCC
Q psy5318          96 NLQCSVCWEQFTLD---------------EAVRKLPCDHFYHTPCIEPWLQLH-----GTCPICRQTLHSES  147 (176)
Q Consensus        96 ~~~C~IC~~~~~~~---------------~~~~~lpC~H~Fh~~Ci~~wl~~~-----~~CP~CR~~l~~~~  147 (176)
                      +..|+||++.+...               ..+..++|+|.||..||..||+..     .+||+||..+..+.
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCc
Confidence            45699999987532               235667899999999999999753     37999999886553

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.5e-14  Score=85.66  Aligned_cols=47  Identities=28%  Similarity=0.592  Sum_probs=39.3

Q ss_pred             CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      +...|+||++.+.++   +.+||||.||..||.+|   +.+||+||+++....
T Consensus         5 ~~l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             CCCCCcccCcccCCC---EEecCCCHHhHHHHHcC---CCcCcCCCCcccCCC
Confidence            346799999999866   77899999999999765   668999999986543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.5e-13  Score=92.63  Aligned_cols=49  Identities=27%  Similarity=0.696  Sum_probs=41.2

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC---CCccccccccCCC
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSES  147 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~l~~~~  147 (176)
                      ...|+||++.|..+   +.++|||.||..||..|++...   .||+||.++...+
T Consensus        21 ~l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CcCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            35699999999866   6689999999999999996653   7999999886544

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2.3e-13  Score=89.91  Aligned_cols=49  Identities=22%  Similarity=0.599  Sum_probs=41.7

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC-CCCccccccccCCC
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSES  147 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l~~~~  147 (176)
                      ...|+||++.+.++   ++++|||.||..||..|++.+ ..||.||.++...+
T Consensus        23 ~l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~   72 (86)
T d1rmda2          23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (86)
T ss_dssp             HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CcCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhh
Confidence            45699999999765   889999999999999999754 58999999886543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=1.7e-12  Score=84.49  Aligned_cols=52  Identities=25%  Similarity=0.243  Sum_probs=44.2

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccccCCC
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSES  147 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~~  147 (176)
                      ..++..|+||++.|.++   +.++|||.||..||..|+.. +.+||.||.++...+
T Consensus         4 iP~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~   56 (80)
T d2c2la2           4 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ   56 (80)
T ss_dssp             CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred             CCccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCccccccccc
Confidence            35677899999999876   78999999999999999965 557999999886543

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.21  E-value=3.5e-12  Score=78.50  Aligned_cols=49  Identities=22%  Similarity=0.514  Sum_probs=38.0

Q ss_pred             CCCccCccccccccCCCceEEec-----CCCcCCHHhHHHHHh--cCCCCccccccccC
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLP-----CDHFYHTPCIEPWLQ--LHGTCPICRQTLHS  145 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lp-----C~H~Fh~~Ci~~wl~--~~~~CP~CR~~l~~  145 (176)
                      ++...|.||++.+...   ...+     |+|.||..||..|+.  .+.+||+||+++..
T Consensus         4 ed~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           4 EDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            4567799999988654   2334     459999999999995  45589999998753

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.20  E-value=4.2e-12  Score=82.11  Aligned_cols=53  Identities=21%  Similarity=0.429  Sum_probs=44.9

Q ss_pred             cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC-CCCccccccccCCCc
Q psy5318          93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSESA  148 (176)
Q Consensus        93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l~~~~~  148 (176)
                      ..++..|+||++.|.++   ++++|||.||..||..|++.+ ..||.|+.++...+.
T Consensus         5 iP~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l   58 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL   58 (78)
T ss_dssp             CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred             CCccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccc
Confidence            34678899999999876   788999999999999999764 579999999876543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.3e-12  Score=85.38  Aligned_cols=48  Identities=23%  Similarity=0.565  Sum_probs=38.4

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES  147 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~  147 (176)
                      ...|+||++.|..+  +...+|||.||..||..|+.  ..||.||.++...+
T Consensus        22 ~l~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          22 LLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD   69 (97)
T ss_dssp             TTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred             cCCCccCCchhhcC--ceeCCCCCchhHHHHHHHHh--ccccccCCcCchhh
Confidence            45699999999865  33347999999999999984  46999998876543

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-10  Score=78.40  Aligned_cols=52  Identities=15%  Similarity=0.068  Sum_probs=45.0

Q ss_pred             CCCccCccccccccCCCceEEecCC-CcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318          94 DSNLQCSVCWEQFTLDEAVRKLPCD-HFYHTPCIEPWLQLHGTCPICRQTLHSESA  148 (176)
Q Consensus        94 ~~~~~C~IC~~~~~~~~~~~~lpC~-H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~  148 (176)
                      .+...|+||++.|.++   ++++|+ |.|++.||..||+.+.+||+||.++...+.
T Consensus        20 P~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L   72 (98)
T d1wgma_          20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI   72 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred             cHHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCcccccccccchhh
Confidence            3568899999999887   888865 589999999999999999999999876554

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=3.2e-09  Score=70.35  Aligned_cols=46  Identities=17%  Similarity=0.587  Sum_probs=36.0

Q ss_pred             CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC----C----CCccccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH----G----TCPICRQ  141 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----~----~CP~CR~  141 (176)
                      ...|+||++++...+.+..++|+|.||..|+..|++.+    .    .||.|+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            45699999999766666666899999999999998521    1    5998653

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0068  Score=37.90  Aligned_cols=35  Identities=26%  Similarity=0.740  Sum_probs=26.7

Q ss_pred             cccCCCccCccccccccCCCceEEec---CCCcCCHHhHHHH
Q psy5318          91 AQIDSNLQCSVCWEQFTLDEAVRKLP---CDHFYHTPCIEPW  129 (176)
Q Consensus        91 ~~~~~~~~C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~w  129 (176)
                      ++...+..|.|| +.+...   ..+|   |+.+||..|+.+.
T Consensus        10 e~v~~D~mC~vC-~v~t~~---~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          10 EPVVNDEMCDVC-EVWTAE---SLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCCSCCCTTT-CCCCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred             cCCCcCcccccc-Cccccc---ceecceeecchhhHHHHHHh
Confidence            345567789999 777655   3345   8999999999986

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.22  E-value=0.0039  Score=37.11  Aligned_cols=47  Identities=26%  Similarity=0.586  Sum_probs=33.1

Q ss_pred             CccCccccccccCCCceEEec-CCCcCCHHhHHHHH---h--cCCCCcccccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL---Q--LHGTCPICRQT  142 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl---~--~~~~CP~CR~~  142 (176)
                      ...|.+|.+....++..+.-. |+..||..|+..-.   .  ..-.||.|+..
T Consensus         6 ~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            456999998776665555554 99999999995321   1  22379999754

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.18  E-value=0.09  Score=32.21  Aligned_cols=49  Identities=14%  Similarity=0.426  Sum_probs=32.0

Q ss_pred             ccCccccccccCCCceEEec-CCCcCCHHhHHH--H-Hhc--CCCCccccccccC
Q psy5318          97 LQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEP--W-LQL--HGTCPICRQTLHS  145 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~--w-l~~--~~~CP~CR~~l~~  145 (176)
                      ..+-||...+......+.-. |.-.||..|+..  . ...  +-.||.|+.....
T Consensus        12 pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~gp   66 (79)
T d1wepa_          12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP   66 (79)
T ss_dssp             CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred             CeEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcCC
Confidence            34449988765554455554 999999999942  1 222  2479999875543

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.0087  Score=33.82  Aligned_cols=43  Identities=26%  Similarity=0.627  Sum_probs=29.3

Q ss_pred             cCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCccccc
Q psy5318          98 QCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQ  141 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~  141 (176)
                      .|.||...-.. +.++.-. |...||..|+.+-+....    .||.||.
T Consensus         2 ~C~vC~~~~~~-~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCC-CCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            48889765433 3344444 999999999988654332    5999975

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.61  E-value=0.011  Score=37.33  Aligned_cols=53  Identities=21%  Similarity=0.523  Sum_probs=33.5

Q ss_pred             CCccCccccccccCC-CceEEec-CCCcCCHHhHHHHH-----hc---CCCCccccccccCCC
Q psy5318          95 SNLQCSVCWEQFTLD-EAVRKLP-CDHFYHTPCIEPWL-----QL---HGTCPICRQTLHSES  147 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~-~~~~~lp-C~H~Fh~~Ci~~wl-----~~---~~~CP~CR~~l~~~~  147 (176)
                      ....|.||....... ..++.-. |...||..|+.+.+     +.   .-.||.|........
T Consensus        15 ~~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~~~   77 (88)
T d1weva_          15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA   77 (88)
T ss_dssp             HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred             CcCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHhhhh
Confidence            346699998654332 2344344 99999999986432     11   236999987654443

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.035  Score=33.40  Aligned_cols=44  Identities=25%  Similarity=0.546  Sum_probs=29.3

Q ss_pred             CccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCccccccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQTL  143 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~l  143 (176)
                      ...|.+|.+.   + .++.-. |...||..|+.+.+....    .||.|+..-
T Consensus         7 c~~C~~C~~~---~-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   55 (70)
T d1fp0a1           7 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   55 (70)
T ss_dssp             SSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCCCCCCc---C-EEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcC
Confidence            3457777542   2 333343 999999999998764433    599997644

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.026  Score=33.08  Aligned_cols=43  Identities=28%  Similarity=0.556  Sum_probs=28.3

Q ss_pred             CccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318          96 NLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQT  142 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~  142 (176)
                      ...|.+|.+.   + .++.- .|...||..|+...+....    .||.|+..
T Consensus         9 ~~~C~~C~~~---g-~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~   56 (61)
T d1mm2a_           9 MEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             CSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             cCCCcCCCCC---C-eEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCc
Confidence            3459999753   2 22333 3999999999976554322    69999754

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=0.026  Score=31.99  Aligned_cols=44  Identities=16%  Similarity=0.414  Sum_probs=29.1

Q ss_pred             cCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCccccc
Q psy5318          98 QCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQ  141 (176)
Q Consensus        98 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~  141 (176)
                      .|.+|...|..-..-..-. ||.+||..|....-+....|..|.+
T Consensus         2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~~~~RvC~~C~~   46 (51)
T d1y02a2           2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR   46 (51)
T ss_dssp             CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred             CccccCCcccCCccCcccccCCcccCccccCCCCCCCeECHhHhh
Confidence            4889988887554334443 9999999997655444557888754

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.02  E-value=0.11  Score=30.17  Aligned_cols=44  Identities=18%  Similarity=0.356  Sum_probs=30.1

Q ss_pred             CCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCccc
Q psy5318          95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPIC  139 (176)
Q Consensus        95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~C  139 (176)
                      ....|--|+..+.+. .+...+ |++.||..|=.---+.-..||-|
T Consensus        14 ~~~~C~gC~~~l~~~-~~y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          14 GERFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             SCCEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCCccCCCCcCCCC-ceEECcCCCCccccccchhhhhhhcCCCCC
Confidence            345699998888643 334455 99999999965422344479987

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.67  E-value=0.32  Score=29.15  Aligned_cols=37  Identities=22%  Similarity=0.510  Sum_probs=28.3

Q ss_pred             CccCccccccccCCCceEEec--CCCcCCHHhHHHHHhcC
Q psy5318          96 NLQCSVCWEQFTLDEAVRKLP--CDHFYHTPCIEPWLQLH  133 (176)
Q Consensus        96 ~~~C~IC~~~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~~~  133 (176)
                      ...|.+|.+.+++.. .++.|  =.|.||..|-+..++..
T Consensus         8 ~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sik~q   46 (80)
T d2cs3a1           8 PLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKAQ   46 (80)
T ss_dssp             SCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHHH
T ss_pred             ceeeeeehhhhcCCc-eEeCCCCcCCceeccccHHHHHhc
Confidence            466999999998653 34444  57999999999988653

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.40  E-value=0.48  Score=28.24  Aligned_cols=44  Identities=23%  Similarity=0.592  Sum_probs=27.8

Q ss_pred             ccCccccccccCCCceEEec-CCCcCCHHhHH----H--HH---hcCCCCcccccc
Q psy5318          97 LQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIE----P--WL---QLHGTCPICRQT  142 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~----~--wl---~~~~~CP~CR~~  142 (176)
                      ..| ||...... ...+.-. |.-.||..|+.    .  ..   ...-.||.|+..
T Consensus        17 ~~C-iC~~~~~~-~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~   70 (76)
T d1wema_          17 LYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             CCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CEE-ECCCccCC-CeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcCc
Confidence            447 88766543 3344444 99999999982    1  11   234589999654

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.74  E-value=0.094  Score=31.41  Aligned_cols=46  Identities=22%  Similarity=0.301  Sum_probs=29.9

Q ss_pred             ccCccccccccCCCceEEec-CCCcCCHHhHHHHH----hcCCCCccccccc
Q psy5318          97 LQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL----QLHGTCPICRQTL  143 (176)
Q Consensus        97 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl----~~~~~CP~CR~~l  143 (176)
                      ..| ||......++..+.-. |...||..|+..-.    ...-.||.|+..-
T Consensus        17 ~~C-~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~~   67 (72)
T d1weea_          17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS   67 (72)
T ss_dssp             ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred             EEe-eCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCcCcC
Confidence            347 7877665555555554 99999999985421    1233699997653