Diaphorina citri psyllid: psy5569


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
MDAFGDNFDDNVDPAAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKKD
cccccccccccccHHHHHHHHHHHHHHccHHHcccccHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccc
***FGDNFDDNVDPAAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVG*****VSRMRSIILQL*QT*****
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MDAFGDNFDDNVDPAAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKKD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Clathrin light chain A Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.confidentO08585
Clathrin light chain Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.confidentQ9VWA1

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0060170 [CC]cilium membraneprobableGO:0043229, GO:0071944, GO:0005929, GO:0043227, GO:0043226, GO:0044446, GO:0031090, GO:0031514, GO:0016020, GO:0044459, GO:0031253, GO:0005886, GO:0042995, GO:0043231, GO:0044463, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044441, GO:0044424, GO:0044425, GO:0044422
GO:0030118 [CC]clathrin coatprobableGO:0043234, GO:0005737, GO:0032991, GO:0016020, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0030117, GO:0044424, GO:0044425, GO:0048475
GO:0012505 [CC]endomembrane systemprobableGO:0005575, GO:0044464, GO:0005623
GO:0008021 [CC]synaptic vesicleprobableGO:0043227, GO:0005737, GO:0043231, GO:0016023, GO:0031410, GO:0044444, GO:0044464, GO:0031982, GO:0005623, GO:0031988, GO:0005575, GO:0043229, GO:0044456, GO:0045202, GO:0044424, GO:0005622, GO:0030135, GO:0043226, GO:0030136
GO:0042277 [MF]peptide bindingprobableGO:0033218, GO:0003674, GO:0005488
GO:0005802 [CC]trans-Golgi networkprobableGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3LVG, chain D
Confidence level:probable
Coverage over the Query: 11-68
View the alignment between query and template
View the model in PyMOL