Psyllid ID: psy5569

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MDAFGDNFDDNVDPAAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKKD
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHcHHHHccccHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHccHHHcccccccEEEcccccccHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mdafgdnfddnvdPAAEFLAREQNQLAgledelqpavAVNATINGMTNSLLFLNAEKQFvaevddiepgteWERIAKLcdfnpkvgrtnkdVSRMRSIILQLkqtplkkd
Flexible Loop (DISEMBL)
mdafgdnfddnVDPAAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWERIaklcdfnpkvgrtnkdvsrmrsiilqlkqtplkkd
Low Complexity Region (SEG)
MDAFGDNFDDNVDPAAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKKD
Disordered region (IsUnstruct)
******************************DELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRT*********IIL**********
Disordered Region (DISOPRED)
***FGDNFDDNVDPAAEFLAREQNQLAGLEDE************GMTNSLLFLNAEKQF***********EWERIAKLCDFNPKVG*****VSRMRSIILQL*QT*****
Disordered Region (DISEMBL)
MDAFGDNFDDNVDPAAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKKD
Disordered Region (DISPRO)
*****DNFDDNVDPAAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKV****K**SR********KQ******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDAFGDNFDDNVDPAAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q9VWA1	219	Clathrin light chain OS=D	yes	N/A	0.536	0.269	0.683	3e-16
O08585	235	Clathrin light chain A OS	yes	N/A	0.509	0.238	0.589	6e-16
P08081	248	Clathrin light chain A OS	yes	N/A	0.672	0.298	0.486	2e-15
P09496	248	Clathrin light chain A OS	no	N/A	0.672	0.298	0.486	2e-15
P04973	243	Clathrin light chain A OS	yes	N/A	0.672	0.304	0.473	7e-15
P08082	229	Clathrin light chain B OS	no	N/A	0.563	0.270	0.5	1e-14
Q6IRU5	229	Clathrin light chain B OS	no	N/A	0.563	0.270	0.5	1e-14
P09497	229	Clathrin light chain B OS	no	N/A	0.545	0.262	0.516	2e-14
P04975	228	Clathrin light chain B OS	no	N/A	0.545	0.263	0.516	2e-14

>sp|Q9VWA1|CLC_DROME Clathrin light chain OS=Drosophila melanogaster GN=Clc PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 50  LLFLNAEKQFVA-EVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLK 108
           L   NAEKQ    E   IEPGTEWERIAKLCDFNPKV +  KDVSRMRSI L LKQ P++
Sbjct: 155 LASRNAEKQAATLENGTIEPGTEWERIAKLCDFNPKVNKAGKDVSRMRSIYLHLKQNPIQ 214

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.
Drosophila melanogaster (taxid: 7227)

>sp|O08585|CLCA_MOUSE Clathrin light chain A OS=Mus musculus GN=Clta PE=1 SV=2

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 52  FLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPL 107
           ++ AE+ FV ++D+  PGTEWER+A+LCDFNPK  +  KDVSRMRS+++ LKQ PL
Sbjct: 178 YVAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 233

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Mus musculus (taxid: 10090)

>sp|P08081|CLCA_RAT Clathrin light chain A OS=Rattus norvegicus GN=Clta PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 34  QPAVAVNATINGMTNSLLFLN--AEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKD 91
           QP   V   +  + +    L   AE+ FV ++D+  PGTEWER+A+LCDFNPK  +  KD
Sbjct: 171 QPFADVIGYVTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKD 230

Query: 92  VSRMRSIILQLKQTPL 107
           VSRMRS+++ LKQ PL
Sbjct: 231 VSRMRSVLISLKQAPL 246

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Rattus norvegicus (taxid: 10116)

>sp|P09496|CLCA_HUMAN Clathrin light chain A OS=Homo sapiens GN=CLTA PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 34  QPAVAVNATINGMTNSLLFLN--AEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKD 91
           QP   V   +  + +    L   AE+ FV ++D+  PGTEWER+A+LCDFNPK  +  KD
Sbjct: 171 QPFADVIGYVTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKD 230

Query: 92  VSRMRSIILQLKQTPL 107
           VSRMRS+++ LKQ PL
Sbjct: 231 VSRMRSVLISLKQAPL 246

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Homo sapiens (taxid: 9606)

>sp|P04973|CLCA_BOVIN Clathrin light chain A OS=Bos taurus GN=CLTA PE=1 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 34  QPAVAVNATINGMTNSLLFLN--AEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKD 91
           QP   V   +  + +    L   AE+ FV ++++  PGTEWER+A+LCDFNPK  +  KD
Sbjct: 166 QPFADVIGYVTNINHPCYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 225

Query: 92  VSRMRSIILQLKQTPL 107
           VSRMRS+++ LKQ PL
Sbjct: 226 VSRMRSVLISLKQAPL 241

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Bos taurus (taxid: 9913)

>sp|P08082|CLCB_RAT Clathrin light chain B OS=Rattus norvegicus GN=Cltb PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 48/62 (77%)

Query: 48  NSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPL 107
           +++ ++ +E+ FV E  +  PGTEWE++A+LCDFNPK  +  KDVSR+RS+++ LKQTPL
Sbjct: 168 DTIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227

Query: 108 KK 109
            +
Sbjct: 228 SR 229

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Rattus norvegicus (taxid: 10116)

>sp|Q6IRU5|CLCB_MOUSE Clathrin light chain B OS=Mus musculus GN=Cltb PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 48/62 (77%)

Query: 48  NSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPL 107
           +++ ++ +E+ FV E  +  PGTEWE++A+LCDFNPK  +  KDVSR+RS+++ LKQTPL
Sbjct: 168 DTIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227

Query: 108 KK 109
            +
Sbjct: 228 SR 229

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Mus musculus (taxid: 10090)

>sp|P09497|CLCB_HUMAN Clathrin light chain B OS=Homo sapiens GN=CLTB PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 46/60 (76%)

Query: 50  LLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKK 109
           + ++ +E+ FV E  +  PGTEWE++A+LCDFNPK  +  KDVSR+RS+++ LKQTPL +
Sbjct: 170 IGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR 229

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Homo sapiens (taxid: 9606)

>sp|P04975|CLCB_BOVIN Clathrin light chain B OS=Bos taurus GN=CLTB PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 46/60 (76%)

Query: 50  LLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKK 109
           + ++ +E+ FV E  +  PGTEWE++A+LCDFNPK  +  KDVSR+RS+++ LKQTPL +
Sbjct: 169 IGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR 228

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
328785742	209	PREDICTED: clathrin light chain [Apis me	0.527	0.277	0.816	3e-21
380020023	209	PREDICTED: clathrin light chain-like [Ap	0.527	0.277	0.816	4e-21
340715086	211	PREDICTED: clathrin light chain-like [Bo	0.518	0.270	0.816	5e-21
156550763	211	PREDICTED: clathrin light chain-like iso	0.518	0.270	0.816	9e-21
158293252	219	AGAP010608-PA [Anopheles gambiae str. PE	0.436	0.219	0.836	1e-20
383860819	210	PREDICTED: clathrin light chain-like [Me	0.518	0.271	0.8	1e-20
328725616	222	PREDICTED: clathrin light chain-like [Ac	0.463	0.229	0.824	2e-20
156550765	207	PREDICTED: clathrin light chain-like iso	0.454	0.241	0.886	2e-20
307179452	220	Clathrin light chain [Camponotus florida	0.463	0.231	0.867	2e-20
332024002	215	Clathrin light chain [Acromyrmex echinat	0.454	0.232	0.867	3e-20

>gi|328785742|ref|XP_395065.3| PREDICTED: clathrin light chain [Apis mellifera]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 52/60 (86%)

Query: 47  TNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTP 106
           TN     NAEKQFVAE D++EPGTEWERIAKLCDFNPK  RT+KDVSRMRSIILQLKQTP
Sbjct: 144 TNRESAKNAEKQFVAEADEVEPGTEWERIAKLCDFNPKSSRTSKDVSRMRSIILQLKQTP 203

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020023|ref|XP_003693898.1| PREDICTED: clathrin light chain-like [Apis florea]

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 52/60 (86%)

Query: 47  TNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTP 106
           TN     NAEKQFVAE D++EPGTEWERIAKLCDFNPK  RT+KDVSRMRSIILQLKQTP
Sbjct: 144 TNRESAKNAEKQFVAEADEVEPGTEWERIAKLCDFNPKSSRTSKDVSRMRSIILQLKQTP 203

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715086|ref|XP_003396051.1| PREDICTED: clathrin light chain-like [Bombus terrestris] gi|350414612|ref|XP_003490369.1| PREDICTED: clathrin light chain-like [Bombus impatiens]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 52/60 (86%)

Query: 47  TNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTP 106
           TN     NAEKQFVAE D++EPGTEWERIAKLCDFNPK  RT+KDVSRMRSIILQLKQTP
Sbjct: 146 TNRESAKNAEKQFVAEADEVEPGTEWERIAKLCDFNPKSSRTSKDVSRMRSIILQLKQTP 205

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550763|ref|XP_001605204.1| PREDICTED: clathrin light chain-like isoform 2 [Nasonia vitripennis]

 Score =  104 bits (259), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 51/60 (85%)

Query: 47  TNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTP 106
           TN     NAEKQFVAE D+IEPGTEWERIAKLCDFNPK  RT+KDVSRMRSIILQLKQ P
Sbjct: 146 TNRESAKNAEKQFVAEADEIEPGTEWERIAKLCDFNPKSSRTSKDVSRMRSIILQLKQNP 205

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293252|ref|XP_558141.3| AGAP010608-PA [Anopheles gambiae str. PEST] gi|157016869|gb|EAL40365.3| AGAP010608-PA [Anopheles gambiae str. PEST]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/55 (83%), Positives = 51/55 (92%)

Query: 54  NAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLK 108
           NAEKQFVAE D+IEPGTEWERIAKLCDFNPK  ++NKD+SRMRSIILQLKQ PL+
Sbjct: 160 NAEKQFVAETDEIEPGTEWERIAKLCDFNPKTNKSNKDISRMRSIILQLKQNPLQ 214

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860819|ref|XP_003705886.1| PREDICTED: clathrin light chain-like [Megachile rotundata]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 51/60 (85%)

Query: 47  TNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTP 106
           TN     NAEKQFVAE D++EPGTEWERIAKLCDFNPK  R +KDVSRMRSIILQLKQTP
Sbjct: 145 TNRESAKNAEKQFVAEADEVEPGTEWERIAKLCDFNPKSSRASKDVSRMRSIILQLKQTP 204

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328725616|ref|XP_001944260.2| PREDICTED: clathrin light chain-like [Acyrthosiphon pisum]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 52/57 (91%)

Query: 53  LNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKK 109
           +NAEKQFVAE D+IEPGTEW+RI+KLCDFNPK  R  KDV+RMRSIILQLKQTPLKK
Sbjct: 160 INAEKQFVAESDEIEPGTEWDRISKLCDFNPKSSRACKDVTRMRSIILQLKQTPLKK 216

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550765|ref|XP_001605186.1| PREDICTED: clathrin light chain-like isoform 1 [Nasonia vitripennis]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/53 (88%), Positives = 49/53 (92%)

Query: 54  NAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTP 106
           NAEKQFVAE D+IEPGTEWERIAKLCDFNPK  RT+KDVSRMRSIILQLKQ P
Sbjct: 149 NAEKQFVAEADEIEPGTEWERIAKLCDFNPKSSRTSKDVSRMRSIILQLKQNP 201

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179452|gb|EFN67776.1| Clathrin light chain [Camponotus floridanus]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/53 (86%), Positives = 50/53 (94%)

Query: 54  NAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTP 106
           NAEKQFVAE D++EPGTEWERIAKLC+FNPK  RT+KDVSRMRSIILQLKQTP
Sbjct: 162 NAEKQFVAEADEVEPGTEWERIAKLCEFNPKSSRTSKDVSRMRSIILQLKQTP 214

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024002|gb|EGI64220.1| Clathrin light chain [Acromyrmex echinatior]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/53 (86%), Positives = 50/53 (94%)

Query: 54  NAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTP 106
           NAEKQFVAE D++EPGTEWERIAKLC+FNPK  RT+KDVSRMRSIILQLKQTP
Sbjct: 157 NAEKQFVAEADEVEPGTEWERIAKLCEFNPKSSRTSKDVSRMRSIILQLKQTP 209

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
FB|FBgn0024814	219	Clc "Clathrin light chain" [Dr	0.5	0.251	0.714	3e-24
UNIPROTKB|Q5ZHR7	215	CLTA "Uncharacterized protein"	0.481	0.246	0.622	5.2e-21
UNIPROTKB|E2RPI8	218	CLTA "Uncharacterized protein"	0.481	0.243	0.622	2.2e-20
UNIPROTKB|F5H6N3	166	CLTA "Clathrin light chain A"	0.481	0.319	0.622	2.2e-20
ZFIN|ZDB-GENE-040426-1986	235	clta "clathrin, light chain (L	0.481	0.225	0.622	2.8e-20
UNIPROTKB|P04975	228	CLTB "Clathrin light chain B"	0.527	0.254	0.534	3.9e-19
UNIPROTKB|F6X5M3	229	CLTB "Uncharacterized protein"	0.527	0.253	0.534	3.9e-19
UNIPROTKB|P09497	229	CLTB "Clathrin light chain B"	0.527	0.253	0.534	3.9e-19
MGI|MGI:1921575	229	Cltb "clathrin, light polypept	0.527	0.253	0.534	3.9e-19
RGD|621353	229	Cltb "clathrin, light chain B"	0.527	0.253	0.534	3.9e-19

FB|FBgn0024814 Clc "Clathrin light chain" [Drosophila melanogaster (taxid:7227)]

 Score = 198 (74.8 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
 Identities = 40/56 (71%), Positives = 43/56 (76%)

Query:    54 NAEKQFVA-EVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLK 108
             NAEKQ    E   IEPGTEWERIAKLCDFNPKV +  KDVSRMRSI L LKQ P++
Sbjct:   159 NAEKQAATLENGTIEPGTEWERIAKLCDFNPKVNKAGKDVSRMRSIYLHLKQNPIQ 214

GO:0005905 "coated pit" evidence=ISS;NAS;TAS

GO:0030125 "clathrin vesicle coat" evidence=ISS;TAS

GO:0005326 "neurotransmitter transporter activity" evidence=ISS

GO:0030132 "clathrin coat of coated pit" evidence=ISS

GO:0006836 "neurotransmitter transport" evidence=ISS

GO:0016183 "synaptic vesicle coating" evidence=ISS;TAS

GO:0007269 "neurotransmitter secretion" evidence=ISS;NAS

GO:0030135 "coated vesicle" evidence=TAS

GO:0008021 "synaptic vesicle" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

UNIPROTKB|Q5ZHR7 CLTA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 192 (72.6 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
 Identities = 33/53 (62%), Positives = 44/53 (83%)

Query:    55 AEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPL 107
             AE+ FV++ +D+ PGTEWER+A+LCDFNPK  +  KDVSRMRS+++ LKQ PL
Sbjct:   161 AEEAFVSDAEDVFPGTEWERVAQLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 213

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

UNIPROTKB|E2RPI8 CLTA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 191 (72.3 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query:    55 AEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPL 107
             AE+ FV ++D+  PGTEWER+A+LCDFNPK  +  KDVSRMRS+++ LKQ PL
Sbjct:   164 AEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 216

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F5H6N3 CLTA "Clathrin light chain A" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query:    55 AEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPL 107
             AE+ FV ++D+  PGTEWER+A+LCDFNPK  +  KDVSRMRS+++ LKQ PL
Sbjct:   112 AEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 164

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

ZFIN|ZDB-GENE-040426-1986 clta "clathrin, light chain (Lca)" [Danio rerio (taxid:7955)]

 Score = 188 (71.2 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query:    55 AEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPL 107
             AE+  V+E+D+  PGTEWER+A+LCDFNPK  +  KDVSRMRS+++ LKQ PL
Sbjct:   181 AEEAMVSELDENSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 233

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|P04975 CLTB "Clathrin light chain B" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query:    52 FLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKK 109
             ++ +E+ FV E  +  PGTEWE++A+LCDFNPK  +  KDVSR+RS+++ LKQTPL +
Sbjct:   171 YVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR 228

GO:0030118 "clathrin coat" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F6X5M3 CLTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 179 (68.1 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query:    52 FLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKK 109
             ++ +E+ FV E  +  PGTEWE++A+LCDFNPK  +  KDVSR+RS+++ LKQTPL +
Sbjct:   172 YVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR 229

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|P09497 CLTB "Clathrin light chain B" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query:    52 FLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKK 109
             ++ +E+ FV E  +  PGTEWE++A+LCDFNPK  +  KDVSR+RS+++ LKQTPL +
Sbjct:   172 YVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR 229

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0060170 "cilium membrane" evidence=IEA

GO:0030118 "clathrin coat" evidence=ISS;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0006886 "intracellular protein transport" evidence=NAS

MGI|MGI:1921575 Cltb "clathrin, light polypeptide (Lcb)" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query:    52 FLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKK 109
             ++ +E+ FV E  +  PGTEWE++A+LCDFNPK  +  KDVSR+RS+++ LKQTPL +
Sbjct:   172 YVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR 229

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005905 "coated pit" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030118 "clathrin coat" evidence=ISO

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042277 "peptide binding" evidence=ISO

GO:0060170 "cilium membrane" evidence=IDA

RGD|621353 Cltb "clathrin, light chain B" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 31/58 (53%), Positives = 45/58 (77%)

Query:    52 FLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKK 109
             ++ +E+ FV E  +  PGTEWE++A+LCDFNPK  +  KDVSR+RS+++ LKQTPL +
Sbjct:   172 YVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR 229

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005326 "neurotransmitter transporter activity" evidence=NAS

GO:0005802 "trans-Golgi network" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006836 "neurotransmitter transport" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016183 "synaptic vesicle coating" evidence=NAS

GO:0030118 "clathrin coat" evidence=IDA

GO:0030125 "clathrin vesicle coat" evidence=NAS

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=NAS

GO:0042277 "peptide binding" evidence=IDA

GO:0060170 "cilium membrane" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O08585	CLCA_MOUSE	No assigned EC number	0.5892	0.5090	0.2382	yes	N/A
Q9VWA1	CLC_DROME	No assigned EC number	0.6833	0.5363	0.2694	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	110
pfam01086	225	pfam01086, Clathrin_lg_ch, Clathrin light chain	1e-16

>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain

 Score = 71.7 bits (176), Expect = 1e-16
 Identities = 32/59 (54%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 53  LNAEKQFVAEVDDIE-PGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLK---QTPL 107
               +QF+AE DD   PGTEWER+AKLCDFNPK  +  +D SR R I+L LK   Q P 
Sbjct: 166 RKEAEQFLAERDDFSSPGTEWERVAKLCDFNPKGSKQGRDKSRFREILLSLKGDEQAPG 224

Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
PF01086	225	Clathrin_lg_ch: Clathrin light chain; InterPro: IP	99.92
KOG4031|consensus	216		99.87

>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.92  E-value=5.1e-27  Score=182.76  Aligned_cols=58  Identities=52%  Similarity=0.853  Sum_probs=2.8

Q ss_pred             hhcHHHHHHHHHhhccCC-CCChhHHHHhhhcCCCCCCCCcchHHHHHHHHHHhh---cCCC
Q psy5569          50 LLFLNAEKQFVAEVDDIE-PGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLK---QTPL  107 (110)
Q Consensus        50 ~~NR~~Ee~fl~~~~~~~-~gt~WERIakLiDf~~K~sk~~kDlSRMR~iLL~LK---~~p~  107 (110)
                      ++||++|++||+.+++.. +||+|+||++||||+++++++++|+||||+|||+||   +.|.
T Consensus       163 ~~nr~~ee~fl~~~~~~~~~~t~WerV~~Lid~~~~~~~~~kD~sRmR~iLl~LK~~~~~Pg  224 (225)
T PF01086_consen  163 KQNREEEEEFLAKREEFLQPGTEWERVAKLIDFNPKSSKSGKDVSRMREILLKLKGDENAPG  224 (225)
T ss_dssp             HTT-----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcccccCCCCCcHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHhhhhccCCC
Confidence            899999999999998765 999999999999999999999999999999999999   6665

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.

>KOG4031|consensus

Probab=99.87  E-value=3.8e-22  Score=157.05  Aligned_cols=60  Identities=50%  Similarity=0.850  Sum_probs=54.9

Q ss_pred             hhcHHHHHHHHHhhccCCCCChhHHHHhhhcCCCCCCCCcchHHHHHHHHHHhhcCCCCC
Q psy5569          50 LLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKK  109 (110)
Q Consensus        50 ~~NR~~Ee~fl~~~~~~~~gt~WERIakLiDf~~K~sk~~kDlSRMR~iLL~LK~~p~~~  109 (110)
                      .+||++++.|+...+..++||+||||++|||||+|++|++|||||||+|||+|||.|.+.
T Consensus       157 ~~nk~eee~~~~e~~~~~~gTeWErv~kL~D~n~k~sk~gkD~SRlrslL~~LK~aP~a~  216 (216)
T KOG4031|consen  157 ANNKAEEEALVKENEEFSPGTEWERVAKLCDFNPKSSKQGKDVSRLRSLLISLKQAPGAA  216 (216)
T ss_pred             HHhHHHHHHHHHhhcccCCCchHHHHHHHHcCCccchhccccHHHHHHHHHHhhhCcCCC
Confidence            778877777777778888999999999999999999999999999999999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-08
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	2e-06

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 47.6 bits (112), Expect = 4e-08
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 7/29 (24%)

Query: 22 EQNQLAGLEDELQ-------PAVAVNATI 43
          E+  L  L+  L+       PA+A+ AT+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 2  DAFGDNFDDN-----VDPAAEFLAREQNQLAGLEDELQPAV 37
            F  +          DPAA FLA++++++AG+E++     
Sbjct: 6  GFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGA 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	98.84
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	92.72
1xi4_J	70	LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-p	84.97

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}

Probab=98.84  E-value=7.3e-11  Score=91.83  Aligned_cols=36  Identities=36%  Similarity=0.606  Sum_probs=0.0

Q ss_pred             CCcCC------C--CCCCCCChHHHHHHHHHHHhhCcccccchh
Q psy5569           1 MDAFG------D--NFDDNVDPAAEFLAREQNQLAGLEDELQPA   36 (110)
Q Consensus         1 m~~~~------d--~f~~~~dpaaeflAreq~~la~~ede~~~~   36 (110)
                      |++||      .  .+..|+||||+||||+|+.|||||++...+
T Consensus         2 ~ddFg~~~~~~~g~~~~~EeDPAAaFLAqqeseIAGIEnDegf~   45 (205)
T 3lvh_D            2 ADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFG   45 (205)
T ss_dssp             --------------------------------------------
T ss_pred             cccccccccccCCCCCccccChHHHHHHhhHHHhcccccccccC
Confidence            57777      2  233499999999999999999999985433

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}

Probab=92.72  E-value=0.0046  Score=47.53  Aligned_cols=69  Identities=9%  Similarity=0.043  Sum_probs=47.6

Q ss_pred             CCChHHHHHHHHHHHhhCcccccchh-----hhhhhhcccccch---------hhcHHHHHHHHHhhccCCCCChhHHHH
Q psy5569          11 NVDPAAEFLAREQNQLAGLEDELQPA-----VAVNATINGMTNS---------LLFLNAEKQFVAEVDDIEPGTEWERIA   76 (110)
Q Consensus        11 ~~dpaaeflAreq~~la~~ede~~~~-----~~~~~~i~~~~~~---------~~NR~~Ee~fl~~~~~~~~gt~WERIa   76 (110)
                      |+...=++..+....|+.+.......     ++|...|+.+|..         .+||.+|++||++++++..|..|.--.
T Consensus        83 EPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~NR~aEEeFLaqRddttiGyV~~~~~  162 (190)
T 3lvg_D           83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIXXXXXXXX  162 (190)
T ss_dssp             STTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSTTTSSHHHHHHHCCTTTHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCccchhhhhccccc
Confidence            55555566666555555442222111     5667778888864         899999999999999999999998554


Q ss_pred             hhh
Q psy5569          77 KLC   79 (110)
Q Consensus        77 kLi   79 (110)
                      ...
T Consensus       163 ~~~  165 (190)
T 3lvg_D          163 XXX  165 (190)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            444

>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J

Probab=84.97  E-value=0.37  Score=31.48  Aligned_cols=50  Identities=8%  Similarity=0.095  Sum_probs=35.1

Q ss_pred             CCChHHHHHHHHHHHhhCcccccchh-----hhhhhhcccccch---------hhcHHHHHHHH
Q psy5569          11 NVDPAAEFLAREQNQLAGLEDELQPA-----VAVNATINGMTNS---------LLFLNAEKQFV   60 (110)
Q Consensus        11 ~~dpaaeflAreq~~la~~ede~~~~-----~~~~~~i~~~~~~---------~~NR~~Ee~fl   60 (110)
                      ++.+.-++..+....|+.+.......     ..|.-.|++||..         .+||.++++||
T Consensus         7 EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~e~Fl   70 (70)
T 1xi4_J            7 EPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFY   70 (70)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            56666677777777776654333211     5667779999874         89999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	80.13

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=80.13  E-value=1.5  Score=25.34  Aligned_cols=47  Identities=15%  Similarity=0.328  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhhccCC--CCChhHHHHhhhcCCCCCCCCcch-HHHHHHHHHHhhc
Q psy5569          53 LNAEKQFVAEVDDIE--PGTEWERIAKLCDFNPKVGRTNKD-VSRMRSIILQLKQ  104 (110)
Q Consensus        53 R~~Ee~fl~~~~~~~--~gt~WERIakLiDf~~K~sk~~kD-lSRMR~iLL~LK~  104 (110)
                      .++.+.|+..-....  ..+.|..||+.+.  +   ++..+ ..|++.|+-.+|+
T Consensus         6 ~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~--g---Rt~~qc~~r~~~L~~dik~   55 (63)
T d2cjja1           6 AKENKAFERALAVYDKDTPDRWANVARAVE--G---RTPEEVKKHYEILVEDIKY   55 (63)
T ss_dssp             HHHHHHHHHHHHHSCTTCTTHHHHHHHHST--T---CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCchHHHHHHHHcC--C---CCHHHHHHHHHHHHHHhhc
Confidence            455666666544433  3357999999994  3   33344 5788887776765