Psyllid ID: psy5607

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------77
MADKWTLCTLIFQKLMTLHLVVARADTFHKSGSRNLPSNFRPVCNYSIIPKTFEKLVYDKLSPLASISGSLLYWFHSFLTNRTQIVKVRKSKSTPIKVTSGCGQGGHMKNLAPPTDSNESIDMDMDIVPEKGKKRALTQSPPPQDNEKKFDFSSVGKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGALRSSPVTSLYVESGIPPLSYRRSKMMLNYVSKVGSCPSNPIHKEIFNPILSITDYPANKPKPAIIRVRELNDFMSHFSNSDFVPYQKHNPPWCFQAPPVDTSLHVDRKKNISPSVFQKHFLDAISSKYNDCIYLPHSKFLLVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHCGISGNEAVDMAAKNPCTSTQPLKLCSACDFKPLVAKIIHNMWQTSWNNLLIPNKLKRIKPVIENWTSSNRNNT
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHcccccccccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccHHHHHHHHHHccccHHHHHHHHHHHcccEEEEEEccEEccEEEcccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccEEEccEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEcccHHHHHHHHccccccHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccccHcHHHHHHHHHHHHHHcccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHcEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHcccEEEEEEcccccccEEccccccccccHHHHHHHHHHHcHHHHcccccEEEEEEccHEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEcccccEEEEEEEcccccccccEEEEccEEccccccHEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHccccHHccccccccccHHHHHHHHHHHHHcccccccccHHHcccccccEEEEEEcccEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccc
MADKWTLCTLIFQKLMTLHLVVARAdtfhksgsrnlpsnfrpvcnysiipkTFEKLVYdklsplasisgSLLYWFHSFLTNRTQIVKVRkskstpikvtsgcgqgghmknlapptdsnesidmdmdivpekgkkraltqspppqdnekkfdfssvgkfpkswgeslilpllkpgkdrlvpsnyrpisllncSGKILEKMVNKRLFWVLEnrglinpfqsggrfrrstiDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRYLCNFLynrsfkvkcngsfsnsfplqngivqgsslspVLFIIFMNDILDIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKwsnqnglifsadpkksACILfsrarnptfpplfyngselkfesNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYIlkklnpvhnagiriatgalrsspvtslyvesgipplsyrRSKMMLNYVSkvgscpsnpihkeifnpilsitdypankpkpaIIRVRELNDfmshfsnsdfvpyqkhnppwcfqappvdtslhvdrkknispsvFQKHFLDAISSkyndciylphskfllvSDSMSAIQAIANICSSYKNSLTSKIYSAWMDlksggkevtlmwcpshcgisgneavdmaaknpctstqplklcsacdfkPLVAKIIHNMWQTswnnllipnklkrikpvienwtssnrnnt
MADKWTLCTLIFQKLMTLHLVVARADTFhksgsrnlpsnfrpvcNYSIIPKTFEKLVYDKLSPLASISGSLLYWFHSFLTNRTQIvkvrkskstpikvtsgcgqgghmknlapptdsnesIDMDMDIVPEKGKkraltqspppqdnekkfDFSSVGKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGlinpfqsggrfrRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIAtgalrsspvtslYVESGIPPLSYRRSKMMLNYVSKVGSCPSNPIHKEIFNPILSITDYPANKPKPAIIRVRELNDFMSHFSNSDFVPYQKHNPPWCFQAPPVDTSLHVDRKKNISPSVFQKHFLDAISSKYNDCIYLPHSKFLLVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHCGISGNEAVDMAAKNPCTSTQPLKLCSACDFKPLVAKIIHNMWQTSwnnllipnklkrikpvienwtssnrnnt
MADKWTLCTLIFQKLMTLHLVVARADTFHKSGSRNLPSNFRPVCNYSIIPKTFEKLVYDKLSPLASISGSLLYWFHSFLTNRTQIVKVRKSKSTPIKVTSGCGQGGHMKNLAPPTDSNESIDMDMDIVPEKGKKRALTQSPPPQDNEKKFDFSSVGKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGALRSSPVTSLYVESGIPPLSYRRSKMMLNYVSKVGSCPSNPIHKEIFNPILSITDYPANKPKPAIIRVRELNDFMSHFSNSDFVPYQKHNPPWCFQAPPVDTSLHVDRKKNISPSVFQKHFLDAISSKYNDCIYLPHSKFLLVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHCGISGNEAVDMAAKNPCTSTQPLKLCSACDFKPLVAKIIHNMWQTSWNNLLIPNKLKRIKPVIENWTSSNRNNT
***KWTLCTLIFQKLMTLHLVVARADTFHKSGSRNLPSNFRPVCNYSIIPKTFEKLVYDKLSPLASISGSLLYWFHSFLTNRTQIVKVR*******************************************************************KFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGALRSSPVTSLYVESGIPPLSYRRSKMMLNYVSKVGSCPSNPIHKEIFNPILSITDYPANKPKPAIIRVRELNDFMSHFSNSDFVPYQKHNPPWCFQAPPVDTSLHVDRKKNISPSVFQKHFLDAISSKYNDCIYLPHSKFLLVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHCGISGNEAVDMAAKNPCTSTQPLKLCSACDFKPLVAKIIHNMWQTSWNNLLIPNKLKRIKPVIENW********
***KWTLCTLIFQKLMTLHLVVARADTF*****RNLPSNFRPVCNYSI********************GSLLYWFHSFLTNRTQIVKV*********VTSGCGQGGHMKN***************DIVPEKGKKRALTQSPPPQDNEKKFDFSSVGKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGALRSSPVTSLYVESGIPPLSYRRSKMMLNYVSKVGSCPSNPIHKEIFN****************IIRVRELNDFMSHFSNSDFVPYQKHNPPWCFQAPPVDTSLHVDR***ISPSVFQKHFLDAISSKYNDCIYLPHSKFLLVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHCGISGNEAVDM*****************CDFKPLVAKIIHNMWQ**************IKPVIENW********
MADKWTLCTLIFQKLMTLHLVVARADTFHKSGSRNLPSNFRPVCNYSIIPKTFEKLVYDKLSPLASISGSLLYWFHSFLTNRTQIVKVRKSKSTPIKVTSGCGQGGHMKNLAPPTDSNESIDMDMDIVPEKG*****************FDFSSVGKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGALRSSPVTSLYVESGIPPLSYRRSKMMLNYVSKVGSCPSNPIHKEIFNPILSITDYPANKPKPAIIRVRELNDFMSHFSNSDFVPYQKHNPPWCFQAPPVDTSLHVDRKKNISPSVFQKHFLDAISSKYNDCIYLPHSKFLLVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHCGISGNEAVDMAAKNPCTSTQPLKLCSACDFKPLVAKIIHNMWQTSWNNLLIPNKLKRIKPVIENWTSSNRNNT
*ADKWTLCTLIFQKLMTLHLVVARADTFHKSGSRNLPSNFRPVCNYSIIPKTFEKLVYDKLSPLAS****LLYWFHSFLTNRTQIVKVR*SKSTPIKVTSG*GQGGHMKNLAPPTDSNESIDMDMDIVPEKGKKRALTQSPPPQDNEKKFDFSSVGKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGALRSSPVTSLYVESGIPPLSYRRSKMMLNYVSKVGSCPSNPIHKEIFNPILSITDYPANKPKPAIIRVRELNDFMSHFSNSDFVPYQKHNPPWCFQAPPVDTSLHVDRKKNISPSVFQKHFLDAISSKYNDCIYLPHSKFLLVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHCGISGNEAVDMAAKNPCTSTQPLKLCSACDFKPLVAKIIHNMWQTSWNNLLIPNKLKRIKPVIENWT*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MADKWTLCTLIFQKLMTLHLVVARADTFHKSGSRNLPSNFRPVCNYSIIPKTFEKLVYDKLSPLASISGSLLYWFHSFLTNRTQIVKVRKSKSTPIKVTSGCGQGGHMKNLAPPTDSNESIDMDMDIVPEKGKKRALTQSPPPQDNEKKFDFSSVGKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGALRSSPVTSLYVESGIPPLSYRRSKMMLNYVSKVGSCPSNPIHKEIFNPILSITDYPANKPKPAIIRVRELNDFMSHFSNSDFVPYQKHNPPWCFQAPPVDTSLHVDRKKNISPSVFQKHFLDAISSKYNDCIYLPHSKFLLVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHCGISGNEAVDMAAKNPCTSTQPLKLCSACDFKPLVAKIIHNMWQTSWNNLLIPNKLKRIKPVIENWTSSNRNNT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query769 2.2.26 [Sep-21-2011]
P21328916 RNA-directed DNA polymera yes N/A 0.501 0.421 0.258 2e-28
Q9NBX4908 Probable RNA-directed DNA yes N/A 0.439 0.372 0.252 6e-27
Q95SX7906 Probable RNA-directed DNA yes N/A 0.447 0.379 0.268 1e-26
P21329916 RNA-directed DNA polymera N/A N/A 0.499 0.419 0.26 3e-25
Q032771004 Retrovirus-related Pol po N/A N/A 0.457 0.350 0.231 1e-16
P164251021 Putative 115 kDa protein yes N/A 0.487 0.367 0.223 9e-16
P08548 1260 LINE-1 reverse transcript N/A N/A 0.284 0.173 0.287 9e-14
P14381 1308 Transposon TX1 uncharacte N/A N/A 0.326 0.191 0.275 4e-11
P11369 1281 Retrovirus-related Pol po yes N/A 0.267 0.160 0.283 5e-11
Q03269337 Retrovirus-related Pol po no N/A 0.274 0.626 0.219 7e-09
>sp|P21328|RTJK_DROME RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster GN=pol PE=1 SV=1 Back     alignment and function desciption
 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 182/398 (45%), Gaps = 12/398 (3%)

Query: 155 VGKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLI 214
           VG FPK+W  + I+ + K GK      +YRP SLL   GKI+E+++  RL    +    I
Sbjct: 487 VGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAI 546

Query: 215 NPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKG- 273
             FQ G R +  T + L  +   A + +  KE  V   LD Q+AFD  W   ++   K  
Sbjct: 547 PKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKRL 606

Query: 274 FNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDI---L 330
           F    Y++  + +FL  R+F V  +G  S+  P+  G+ QGS L P L+ +F +D+    
Sbjct: 607 FPPQLYLV--VKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHT 664

Query: 331 DIIKVPLRRLL---FIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKS 387
            + +V    +L   + DD  V+ + K I      +Q+ L+   +W+    +  +A+  K 
Sbjct: 665 PVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAE--KC 722

Query: 388 ACILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVL 447
           A + F+  R  + P +  NG  ++     K+LG+  D K+ ++ HI + +      +  +
Sbjct: 723 ANVTFAN-RTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARM 781

Query: 448 KMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGAL 507
             +   +  +     +  YKS + P   YG  VY  A    L K+  +    +R  +GA 
Sbjct: 782 SWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAP 841

Query: 508 RSSPVTSLYVESGIPPLSYRRSKMMLNYVSKVGSCPSN 545
                  +  +  +P L  +   +   Y+ ++   P++
Sbjct: 842 WYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNS 879

Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 4EC: 9
>sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster GN=X-element\ORF2 PE=3 SV=1 Back     alignment and function description
>sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster GN=RTase PE=2 SV=1 Back     alignment and function description
>sp|P21329|RTJK_DROFU RNA-directed DNA polymerase from mobile element jockey OS=Drosophila funebris GN=jockey\pol PE=1 SV=1 Back     alignment and function description
>sp|Q03277|PO11_SCICO Retrovirus-related Pol polyprotein from type-1 retrotransposable element R1 (Fragment) OS=Sciara coprophila PE=4 SV=1 Back     alignment and function description
>sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotransposable element R1DM OS=Drosophila melanogaster PE=4 SV=1 Back     alignment and function description
>sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=1 SV=1 Back     alignment and function description
>sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=4 SV=1 Back     alignment and function description
>sp|P11369|POL2_MOUSE Retrovirus-related Pol polyprotein LINE-1 OS=Mus musculus GN=Pol PE=1 SV=2 Back     alignment and function description
>sp|Q03269|PO11_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable element R1 (Fragment) OS=Nasonia vitripennis PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query769
125901787 1222 pol-like protein [Biomphalaria glabrata] 0.762 0.479 0.327 7e-94
427798887 1199 Putative tick transposon, partial [Rhipi 0.773 0.496 0.322 1e-88
427798885 1199 Putative tick transposon, partial [Rhipi 0.776 0.497 0.324 4e-88
427798889 1199 Putative tick transposon, partial [Rhipi 0.775 0.497 0.318 2e-87
427791063 1035 Putative tick transposon, partial [Rhipi 0.790 0.587 0.308 5e-87
427791807 1212 Putative tick transposon, partial [Rhipi 0.759 0.481 0.330 8e-84
427791321 1210 Putative tick transposon, partial [Rhipi 0.771 0.490 0.313 6e-81
427791639 1004 Putative tick transposon, partial [Rhipi 0.612 0.469 0.346 5e-77
427792011 1121 Putative tick transposon, partial [Rhipi 0.763 0.523 0.294 8e-77
427791653 947 Putative tick transposon, partial [Rhipi 0.607 0.493 0.351 3e-76
>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata] Back     alignment and taxonomy information
 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 210/641 (32%), Positives = 322/641 (50%), Gaps = 55/641 (8%)

Query: 154  SVGKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGL 213
              G FP SW ++ ++P+ KPG+D   P+NYRPI+L +C  K +E+M+N RL W LE+  +
Sbjct: 474  QTGAFPNSWRKATVIPIPKPGRDGSDPANYRPIALTSCICKTMERMINSRLVWYLESNKV 533

Query: 214  INPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKG 273
            I+ +Q G R  R+T D+LV LE      L ++E  VA+  D +KA+D TW+  I+  L  
Sbjct: 534  ISNYQCGFRQGRTTTDHLVRLEAYIRNALLRREHLVAVFFDIEKAYDTTWKHGILRDLAL 593

Query: 274  FNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDII 333
              + G++ R++  FL +R F+V+   S S++   + G+ QGS LS  LF I +N I++ +
Sbjct: 594  MGLKGHLPRFVEEFLKDRKFQVRVGNSASDTHDQEMGVPQGSILSVTLFNIKINSIINAL 653

Query: 334  KVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFS 393
               +   L++DDF+++  GK +  L  K+Q  LN I  W+N NG  FS     S      
Sbjct: 654  SPGIECSLYVDDFVILTYGKNMNTLERKLQLCLNKIQGWANYNGFKFSDSKTVSMHFCNL 713

Query: 394  RARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLKMVCNK 453
            R  +P  P LF +  ++      KFLGL  D+K N+  HI   K +   +LN+L+++ + 
Sbjct: 714  RGLHPD-PELFIHKKKIPVVKTTKFLGLTLDSKFNFLPHIKELKKKCQKSLNILRVLSHT 772

Query: 454  KYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGALRSSPVT 513
             +G  R+TLL  Y+S I    DYG I+Y +A+   LK L P+ NA +R+  GA R+SP+ 
Sbjct: 773  DWGADRDTLLLLYRSLIRSKLDYGSIIYGAARKSYLKILEPIQNAALRLCLGAFRTSPIP 832

Query: 514  SLYVESGIPPLSYRRSKMMLNYVSKVGSCPSNPIHKEIFNPI-LSITDYPANKPKPAIIR 572
            SL+VE+G  P+  R  K+ + Y+ K+ S P+NP    IFNP  + + +   N  +P  +R
Sbjct: 833  SLHVEAGELPMDIRMKKLAMQYIVKLKSNPTNPAFDSIFNPTEVELYNRRPNVIQPLGLR 892

Query: 573  VRELNDFMSHFSNSDFVPYQKHNPPWCFQAPPVDTSLHVDRKKNISPSVFQKHFLDAISS 632
            +RE    ++   +         NPPW    P ++ SL   +K+N  PS+ Q HF + +  
Sbjct: 893  MREPIQNLTQPIDQISKIETPQNPPWLMNKPKLNLSLLNFKKENTDPSILQVHFRE-LQE 951

Query: 633  KYNDC--IY------------------------LP------------------------H 642
             Y DC  IY                        LP                         
Sbjct: 952  SYGDCGTIYTDGSKMEGKVACACSFRNKTISRRLPDGCSIFTAELHAILLALMAVKASER 1011

Query: 643  SKFLLVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHCGISGNE 702
            SKF++ SDS SA+QA+  + +     L  K       + +  ++VT +W PSH GI GNE
Sbjct: 1012 SKFIICSDSKSALQALGRMKTDI--PLVHKSLKLLDLITADRRDVTFIWVPSHVGIEGNE 1069

Query: 703  AVDMAAKNPCTSTQPLKLCSACDFKPLVAKIIHNMWQTSWN 743
            A D  AK               D +  +A   +  WQ  W 
Sbjct: 1070 AADREAKRALNHAVSGTQIPYSDLRQSIASATYREWQNRWE 1110

Source: Biomphalaria glabrata

Species: Biomphalaria glabrata

Genus: Biomphalaria

Family: Planorbidae

Order:

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota
>gi|427798887|gb|JAA64895.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427798885|gb|JAA64894.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427798889|gb|JAA64896.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427791063|gb|JAA60983.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427791639|gb|JAA61271.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427792011|gb|JAA61457.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427791653|gb|JAA61278.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query769
FB|FBgn0045761888 CHKov1 "CHKov1" [Drosophila me 0.499 0.432 0.272 1.1e-31
ASPGD|ASPL00000556521054 AN0368 [Emericella nidulans (t 0.507 0.370 0.250 2.4e-23
ASPGD|ASPL00000402261538 AN2661 [Emericella nidulans (t 0.469 0.234 0.258 4e-23
ASPGD|ASPL0000077547 1581 AN8648 [Emericella nidulans (t 0.530 0.258 0.241 9.8e-23
ASPGD|ASPL0000033911686 AN2796 [Emericella nidulans (t 0.512 0.574 0.242 3.4e-22
ASPGD|ASPL0000037597666 AN2711 [Emericella nidulans (t 0.235 0.271 0.284 4.8e-15
DICTYBASE|DDB_G0292060282 DDB_G0292060 "TRE3-A ORF2" [Di 0.210 0.574 0.309 7e-14
DICTYBASE|DDB_G0270650342 DDB_G0270650 "TRE3-C ORF2" [Di 0.226 0.508 0.325 1.7e-13
DICTYBASE|DDB_G0280011650 DDB_G0280011_TE "transposable 0.210 0.249 0.315 3.6e-13
DICTYBASE|DDB_G0270458838 DDB_G0270458 "TRE3-C ORF2" [Di 0.344 0.316 0.285 4.2e-13
FB|FBgn0045761 CHKov1 "CHKov1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 380 (138.8 bits), Expect = 1.1e-31, P = 1.1e-31
 Identities = 111/407 (27%), Positives = 193/407 (47%)

Query:   153 SSVGKFPKSWGESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRG 212
             + +G FP+ W +S I+ + KPGKD+  PS+YRPISLL C  K+ EKM+  R+   L    
Sbjct:   479 AKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINN 538

Query:   213 LINPFQSGGRFRRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWR----FKII 268
              +   Q G R +  TI+ +  +  E       +E   A+ LD  +AFD  W     FKII
Sbjct:   539 TLPTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKII 598

Query:   269 ETLKGFNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMND 328
             + L     N + L  L ++LYN  F ++C+ S S    ++ G+ QGS L P+L+ ++  D
Sbjct:   599 KLLPQ---NTHKL--LKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTAD 653

Query:   329 ILDIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSA 388
                 I   L    F DD  +++R K        + + L  + +W     +  S + +K  
Sbjct:   654 FP--IDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRI--SINVQKCK 709

Query:   389 CILFSRARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVLK 448
              + F+  +  T PPL  N   +     + +LG++ D ++ W  HI        +    L 
Sbjct:   710 QVTFTLNKQ-TCPPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLH 768

Query:   449 MVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGA-- 506
              + N +  +  E     Y S + PI+ YG  ++ +A    +  +    +  +RI TGA  
Sbjct:   769 WLINARSPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPW 828

Query:   507 -LRSSPV-TSLYVESGIPPLSYRRSKMMLNYVSKVGSCPSNPIHKEI 551
              LR+  +   L ++  I  ++ +++K    Y  K+ +  +NP+ +++
Sbjct:   829 YLRNENIHRDLKIKLVIEVIAEKKTK----YNEKL-TTHTNPLARKL 870
GO:0006278 "RNA-dependent DNA replication" evidence=IEA
GO:0003964 "RNA-directed DNA polymerase activity" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
ASPGD|ASPL0000055652 AN0368 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000040226 AN2661 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000077547 AN8648 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000033911 AN2796 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000037597 AN2711 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292060 DDB_G0292060 "TRE3-A ORF2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270650 DDB_G0270650 "TRE3-C ORF2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0280011 DDB_G0280011_TE "transposable element" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270458 DDB_G0270458 "TRE3-C ORF2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.26.4LOW CONFIDENCE prediction!
3rd Layer3.1.26LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query769
cd01650220 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long term 1e-43
pfam00078194 pfam00078, RVT_1, Reverse transcriptase (RNA-depen 9e-20
cd09276128 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI dom 4e-15
pfam00075126 pfam00075, RNase_H, RNase H 1e-10
cd01648119 cd01648, TERT, TERT: Telomerase reverse transcript 2e-04
>gnl|CDD|238827 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT) Back     alignment and domain information 
 Score =  156 bits (397), Expect = 1e-43
 Identities = 73/267 (27%), Positives = 119/267 (44%), Gaps = 58/267 (21%)

Query: 164 ESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPFQSGGRF 223
           ++ I+ + K GK    P NYRPISLL+   K+LEK++  RL  VLE   L  P Q G R 
Sbjct: 1   KARIILIPKKGKPSD-PKNYRPISLLSVLYKLLEKILANRLRPVLEENIL--PNQFGFRP 57

Query: 224 RRSTIDNLVFLEKEAAQGLAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRY 283
            RST D ++ L +   +   KK+  V + LD +KAFD      +++ L            
Sbjct: 58  GRSTTDAILLLREVIEKAKEKKKSLVLVFLDFEKAFDSVDHEFLLKAL------------ 105

Query: 284 LCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFIIFMNDILDII---------K 334
                                     G+ QG  LSP+LF + ++D+L ++          
Sbjct: 106 --------------------------GVRQGDPLSPLLFNLALDDLLRLLNKEEEIKLGG 139

Query: 335 VPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFSR 394
             +  L + DD ++ + GK       K+Q+ L  + +WS ++GL  +  P KS  +L   
Sbjct: 140 PGITHLAYADDIVLFSEGK-----SRKLQELLQRLQEWSKESGLKIN--PSKSKVMLIGN 192

Query: 395 ARNPTFPPLFYNGSELKFESNIKFLGL 421
            +      +  NG+ ++     K+LG+
Sbjct: 193 -KKKRLKDITLNGTPIEAVETFKYLGV 218

This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities. Length = 220
>gnl|CDD|215698 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase) Back     alignment and domain information
>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse transcriptases Back     alignment and domain information
>gnl|CDD|215695 pfam00075, RNase_H, RNase H Back     alignment and domain information
>gnl|CDD|238826 cd01648, TERT, TERT: Telomerase reverse transcriptase (TERT) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 769
cd01650220 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repea 100.0
cd01651226 RT_G2_intron RT_G2_intron: Reverse transcriptases 99.97
PF00078214 RVT_1: Reverse transcriptase (RNA-dependent DNA po 99.95
cd03487214 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcr 99.95
KOG4768|consensus796 99.77
cd01709346 RT_like_1 RT_like_1: A subfamily of reverse transc 99.73
cd01646158 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcrip 99.71
cd01648119 TERT TERT: Telomerase reverse transcriptase (TERT) 99.66
PRK06548161 ribonuclease H; Provisional 99.42
cd0030498 RT_like RT_like: Reverse transcriptase (RT, RNA-de 99.29
PRK08719147 ribonuclease H; Reviewed 99.29
PRK00203150 rnhA ribonuclease H; Reviewed 99.27
COG0328154 RnhA Ribonuclease HI [DNA replication, recombinati 99.22
PF00075132 RNase_H: RNase H; InterPro: IPR002156 The RNase H 99.17
KOG1005|consensus888 98.97
cd06222130 RnaseH RNase H (RNase HI) is an endonuclease that 98.62
COG3344328 Retron-type reverse transcriptase [DNA replication 98.58
cd01645213 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from r 98.48
KOG3752|consensus371 98.45
cd03714119 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) oc 98.34
cd01699278 RNA_dep_RNAP RNA_dep_RNAP: RNA-dependent RNA polym 98.12
cd03715210 RT_ZFREV_like RT_ZFREV_like: A subfamily of revers 98.02
cd01647177 RT_LTR RT_LTR: Reverse transcriptases (RTs) from r 97.93
cd01650220 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repea 97.84
PRK13907128 rnhA ribonuclease H; Provisional 97.82
PF1345687 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH 97.32
PF00078214 RVT_1: Reverse transcriptase (RNA-dependent DNA po 96.98
PRK07708219 hypothetical protein; Validated 96.87
cd01651226 RT_G2_intron RT_G2_intron: Reverse transcriptases 96.56
PRK07238 372 bifunctional RNase H/acid phosphatase; Provisional 96.5
cd01644213 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) i 96.11
PHA00028561 rep RNA replicase, beta subunit 89.83
PF05919498 Mitovir_RNA_pol: Mitovirus RNA-dependent RNA polym 89.38
PF00680491 RdRP_1: RNA dependent RNA polymerase; InterPro: IP 89.11
cd03487214 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcr 88.46
PF03431542 RNA_replicase_B: RNA replicase, beta-chain ; Inter 81.92
>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT) Back     alignment and domain information 
Probab=100.00  E-value=1.3e-34  Score=294.25  Aligned_cols=211  Identities=34%  Similarity=0.529  Sum_probs=192.8

Q ss_pred             ccEEEEeecCCCCCCCCCCCcccccCCchhHHHHHHHHhhhhHHHHhcCCCCCCcccccCCCChhhHHHHHHHHHHHhhc
Q psy5607         164 ESLILPLLKPGKDRLVPSNYRPISLLNCSGKILEKMVNKRLFWVLENRGLINPFQSGGRFRRSTIDNLVFLEKEAAQGLA  243 (769)
Q Consensus       164 ~a~i~~i~K~~kd~~~~~~yRPIsll~~~~Ki~ekii~~rL~~~~~~~~~l~~~Q~Gfr~~rs~~d~i~~l~~~i~~~~~  243 (769)
                      .+++++|||++ ++.++++||||+++++.+|++++++..||..+++.  .+++.|+||++|+++.+++..+.+.++...+
T Consensus         1 ~~~~~~ipK~~-~~~~~~~~RpI~~~~~~~k~~~~~i~~~l~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~   77 (220)
T cd01650           1 KARIILIPKKG-KPSDPKNYRPISLLSVLYKLLEKILANRLRPVLEE--NILPNQFGFRPGRSTTDAILLLREVIEKAKE   77 (220)
T ss_pred             CCEEEEeeCCC-CCCCccCcCCchhhhHHHHHHHHHHHHHHHHHHhh--cCCcccccccCCChHHHHHHHHHHHHHHHHH
Confidence            47899999998 45599999999999999999999999999999985  6779999999999999999999999999998


Q ss_pred             ccccEEEEEecccCCCCCCChHHHHHHHhcCCCCchhHHHHHHHhcCCeEEEEeCCccceeeeccCCCCCCCCchHHHHH
Q psy5607         244 KKECTVALLLDGQKAFDMTWRFKIIETLKGFNINGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLSPVLFI  323 (769)
Q Consensus       244 ~~~~~~~v~lD~~kAFD~V~~~~L~~~L~~~g~~~~~~~~i~~~l~~~~~~v~~~~~~s~~~~~~~GvpQGs~LSPlLf~  323 (769)
                      ++...+++++|+++|||+|+|+.|++.|                                      |+|||+++||+||+
T Consensus        78 ~~~~~~~l~~Di~~aFdsi~~~~l~~~l--------------------------------------GipQG~~lSp~l~~  119 (220)
T cd01650          78 KKKSLVLVFLDFEKAFDSVDHEFLLKAL--------------------------------------GVRQGDPLSPLLFN  119 (220)
T ss_pred             cCCceEEEEEEHHhhcCcCCHHHHHHHh--------------------------------------CCccCCcccHHHHH
Confidence            8999999999999999999999999998                                      99999999999999


Q ss_pred             HHHHHHHhhhc---------CCceeeeeeccceEEEeccCHHHHHHHHHHHHHHHHHHHHHhCcccccCCCceEEEEeec
Q psy5607         324 IFMNDILDIIK---------VPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSACILFSR  394 (769)
Q Consensus       324 l~~~~l~~~l~---------~~~~~~~yADD~~l~~~~~~~~~~~~~lq~~l~~l~~w~~~~GL~in~~~~Kt~~i~~~~  394 (769)
                      ++++++.+.+.         ....+..||||+++++.+..     ..++..++.+..|+..+|+++|  ++||++++++.
T Consensus       120 l~~~~l~~~~~~~~~~~~~~~~~~~~~yaDD~~i~~~~~~-----~~~~~~~~~~~~~~~~~gl~in--~~Kt~~~~~~~  192 (220)
T cd01650         120 LALDDLLRLLNKEEEIKLGGPGITHLAYADDIVLFSEGKS-----RKLQELLQRLQEWSKESGLKIN--PSKSKVMLIGN  192 (220)
T ss_pred             HHHHHHHHHHHhhccccCCCCccceEEeccceeeeccCCH-----HHHHHHHHHHHHHHHHcCCEEC--hhheEEEEecC
Confidence            99999998874         57889999999999988631     4889999999999999999999  99999999987


Q ss_pred             CCCCCCCCeecCCCCcccccceeEeeeEe
Q psy5607         395 ARNPTFPPLFYNGSELKFESNIKFLGLYW  423 (769)
Q Consensus       395 ~~~~~~~~i~i~~~~i~~~~~~kyLGv~i  423 (769)
                      ..... ..+..++..+..+.++||||+++
T Consensus       193 ~~~~~-~~~~~~~~~~~~~~~~kyLG~~i  220 (220)
T cd01650         193 KKKRL-KDITLNGTPIEAVETFKYLGVTI  220 (220)
T ss_pred             CCcch-hhhhhcCCcccCCCCCeeccccC
Confidence            76554 33777888889999999999975

This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities.
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin Back     alignment and domain information
>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons Back     alignment and domain information
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons Back     alignment and domain information
>KOG4768|consensus Back     alignment and domain information
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs) Back     alignment and domain information
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons Back     alignment and domain information
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT) Back     alignment and domain information
>PRK06548 ribonuclease H; Provisional Back     alignment and domain information
>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family Back     alignment and domain information
>PRK08719 ribonuclease H; Reviewed Back     alignment and domain information
>PRK00203 rnhA ribonuclease H; Reviewed Back     alignment and domain information
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site Back     alignment and domain information
>KOG1005|consensus Back     alignment and domain information
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner Back     alignment and domain information
>COG3344 Retron-type reverse transcriptase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs) Back     alignment and domain information
>KOG3752|consensus Back     alignment and domain information
>cd03714 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons Back     alignment and domain information
>cd01699 RNA_dep_RNAP RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage Back     alignment and domain information
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT Back     alignment and domain information
>cd01647 RT_LTR RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template Back     alignment and domain information
>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT) Back     alignment and domain information
>PRK13907 rnhA ribonuclease H; Provisional Back     alignment and domain information
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B Back     alignment and domain information
>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons Back     alignment and domain information
>PRK07708 hypothetical protein; Validated Back     alignment and domain information
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin Back     alignment and domain information
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional Back     alignment and domain information
>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons Back     alignment and domain information
>PHA00028 rep RNA replicase, beta subunit Back     alignment and domain information
>PF05919 Mitovir_RNA_pol: Mitovirus RNA-dependent RNA polymerase; InterPro: IPR008686 This family consists of several Mitovirus RNA-dependent RNA polymerase proteins Back     alignment and domain information
>PF00680 RdRP_1: RNA dependent RNA polymerase; InterPro: IPR001205 RNA-directed RNA polymerase (RdRp) (2 Back     alignment and domain information
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons Back     alignment and domain information
>PF03431 RNA_replicase_B: RNA replicase, beta-chain ; InterPro: IPR005093 RNA-directed RNA polymerase (RdRp) (2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query769
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.6 bits (138), Expect = 1e-08
 Identities = 66/446 (14%), Positives = 128/446 (28%), Gaps = 116/446 (26%)

Query: 331 DIIKVPLRRLLFIDDFLVIARGKVIELLRIKIQKA-LNDILKWSNQNGLIFSADPKKSAC 389
           DI+ V      F+D+F       V ++ +  + K  ++ I+          S D      
Sbjct: 20  DILSVFEDA--FVDNFDC---KDVQDMPKSILSKEEIDHIIM---------SKDAVSGTL 65

Query: 390 ILFS--RARNPTFPPLFYNGSELKFESNIKFLGLYWDAKMNWALHINHTKSRAMVALNVL 447
            LF    ++       F          N KFL                           +
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVL---RINYKFL---MSP---------------------I 98

Query: 448 KMVCNKKYGVRRETLLTFYKSYIMPIFDYGCIVYSSAKDYILKKLNPVHNAGIRIATGAL 507
           K    +   + R      Y      +++   +       Y + +L P     +R A   L
Sbjct: 99  KTEQRQPSMMTRM-----YIEQRDRLYNDNQVF----AKYNVSRLQPYLK--LRQALLEL 147

Query: 508 RSSPVTSLYVESGIPPLSYRRSKMMLNYVSKVGSCPSNPIHKEIFNPI--LSITDYPANK 565
           R +    +    G         K  +     V  C S  +  ++   I  L++ +   N 
Sbjct: 148 RPAKNVLIDGVLGS-------GKTWV--ALDV--CLSYKVQCKMDFKIFWLNLKNC--NS 194

Query: 566 PKPAIIRVRELNDFMSHFSNSDFVPYQKHNPPWCFQAPPVDTSLHVDRKKNISPSVFQKH 625
           P+  +  +++L                + +P W  ++   D S ++  + +   +  ++ 
Sbjct: 195 PETVLEMLQKL--------------LYQIDPNWTSRS---DHSSNIKLRIHSIQAELRRL 237

Query: 626 FLDAISSKYNDCIYLPHSKFLLVSD---SMSAIQAIANICSSYKNSLTSKIYSAWMDLKS 682
                S  Y +C        LLV     +  A  A    C   K  LT++ +    D  S
Sbjct: 238 LK---SKPYENC--------LLVLLNVQNAKAWNAFNLSC---KILLTTR-FKQVTDFLS 282

Query: 683 GGKEVTLMWCPSHCGISGNEAVDMAAKNPCTSTQPLKL-CSACDFKPLVAKII------- 734
                 +        ++ +E   +  K      +P  L        P    II       
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 735 HNMWQTSWNNLLIPNKLKRIKPVIEN 760
              W   W ++        I+  +  
Sbjct: 341 LATWDN-WKHVNCDKLTTIIESSLNV 365
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query769
3kyl_A596 Telomerase reverse transcriptase; reverse transcri 99.67
1mu2_A555 HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym 99.64
2zd1_A557 Reverse transcriptase/ribonuclease H; P51/P66, het 99.62
3qio_A150 GAG-POL polyprotein; RNAse H, inhibitor, nuclease, 99.4
3p1g_A165 Xenotropic murine leukemia virus-related virus (X 99.28
2e4l_A158 Ribonuclease HI, RNAse HI; hydrolase, endoribonucl 99.27
1jl1_A155 Ribonuclease HI; RNAse HI, protein stability, ther 99.27
2qkb_A154 Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy 99.26
2lsn_A165 Reverse transcriptase; RNAse H, viral protein; NMR 99.26
3h08_A146 RNH (ribonuclease H); RNAse H, 3D-structure, endon 99.26
1ril_A166 Ribonuclease H; hydrolase(endoribonuclease); 2.80A 99.23
2kq2_A147 Ribonuclease H-related protein; PSI, NESG, protein 98.89
3u3g_D140 Ribonuclease H, RNAse H1; hydrolase, cleave the RN 98.55
3hst_B141 Protein RV2228C/MT2287; ribonuclease H1, RV2228C N 98.52
2ehg_A149 Ribonuclease HI; RNAse HI, hyperthermophilic archa 98.44
3fsi_A255 RT, reverse transcriptase domain; transferase/DNA 98.28
2zd1_B428 P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleosid 97.58
1rw3_A455 POL polyprotein; RNA and DNA dependent DNA polymer 97.29
1xr5_A466 Genome polyprotein; RNA-dependent RNA polymerase, 97.22
1ra6_A461 P3D, genome polyprotein; nucleotidyltransferase, R 97.19
3uqs_A515 RNA-dependent RNA polymerase; transferase; 2.00A { 96.75
1zbf_A142 Ribonuclease H-related protein; RNAse H, RNA/DNA h 94.29
2ckw_A515 RNA-directed RNA polymerase; hydrolase, nucleotide 90.82
1u09_A476 Polyprotein; protein-DNA complex, RNA-dependent RN 90.32
3bso_A510 RNA dependent RNA polymerase; RNA-dependent RNA po 90.31
3n6m_A462 RNA-dependent RNA polymerase; EV71, RDRP, GTP, tra 88.62
1khv_A516 RNA-directed RNA polymerase; RNA-dependent RNA pol 88.2
2ijd_1644 Picornain 3C, RNA-directed RNA polymerase; RNA-dep 81.26
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A Back     alignment and structure
Probab=99.67  E-value=1.1e-15  Score=162.07  Aligned_cols=186  Identities=15%  Similarity=0.162  Sum_probs=137.4

Q ss_pred             ccEEEEeecCCCCCCCCCCCcccc--cCCchhHHHHHHHHhhhhHHHHhcCCCCCCcccccCCCChhhHHHHHHHHHHHh
Q psy5607         164 ESLILPLLKPGKDRLVPSNYRPIS--LLNCSGKILEKMVNKRLFWVLENRGLINPFQSGGRFRRSTIDNLVFLEKEAAQG  241 (769)
Q Consensus       164 ~a~i~~i~K~~kd~~~~~~yRPIs--ll~~~~Ki~ekii~~rL~~~~~~~~~l~~~Q~Gfr~~rs~~d~i~~l~~~i~~~  241 (769)
                      .+.+-.|+|..       |||-|-  -.....+-.=|++..+....+++         .+.+..|+.++...+.+..   
T Consensus       181 ~~~~~~i~~~~-------n~~~i~~~f~~~~~~~~lKl~~~~~~~~~~~---------~~~~~~sihqa~~~L~q~s---  241 (596)
T 3kyl_A          181 RGVLNIIPKQD-------NFRAIVSIFPDSARKPFFKLLTSKIYKVLEE---------KYKTSGSLYTCWSEFTQKT---  241 (596)
T ss_dssp             SEEEEEEECSS-------SEEEEEEECCCCSSHHHHHHHHHHHHHHHHH---------HSCCCCCSSHHHHHHHHHC---
T ss_pred             chhhhhCcccc-------cHHHHHHHhhhhccCCceEEEeccCCcchhh---------hccccccHHHHHHHHHhhc---
Confidence            45667778864       677662  12333445556666666666664         2445566777776665332   


Q ss_pred             hcccccEEEEEecccCCCCCCChHHHHHHHhcCCC---CchhHHHHHHHhcCCeEEEEeCCccceeeeccCCCCCCCCch
Q psy5607         242 LAKKECTVALLLDGQKAFDMTWRFKIIETLKGFNI---NGYMLRYLCNFLYNRSFKVKCNGSFSNSFPLQNGIVQGSSLS  318 (769)
Q Consensus       242 ~~~~~~~~~v~lD~~kAFD~V~~~~L~~~L~~~g~---~~~~~~~i~~~l~~~~~~v~~~~~~s~~~~~~~GvpQGs~LS  318 (769)
                         ....+++-+|++++||+|+|+.|+..|...+.   +..+..||+.++....  |..+|.   ......|+|||+++|
T Consensus       242 ---~G~~yVVDaDIkkFFDnINHdkLLk~L~~~i~~IlDk~Il~LIkk~Lka~L--V~igGk---~y~qekGTPQGGVIS  313 (596)
T 3kyl_A          242 ---QGQIYGIKVDIRDAYGNVKIPVLCKLIQSIPTHLLDSEKKNFIVDHISNQF--VAFRRK---IYKWNHGLLQGDPLS  313 (596)
T ss_dssp             ---CSCCEEEEEEESSTTTTCCHHHHHHHHTTSCTTTSCHHHHHHHHHHHHCEE--EESSSS---EEEECSSSCBTCTTH
T ss_pred             ---CCCeEEEeeEHHhhCCCCCHHHHHHHHHhhccccccHHHHHHHHHHHhhCe--EEECCE---EEecCCcccCCcchh
Confidence               34579999999999999999999999999875   6778889999887655  444553   355678999999999


Q ss_pred             HHHHHHHHHHHHhhhc----CCceeeeeeccceEEEeccCHHHHHHHHHHHHHHHHHHHHHhCcccccCCCceEE
Q psy5607         319 PVLFIIFMNDILDIIK----VPLRRLLFIDDFLVIARGKVIELLRIKIQKALNDILKWSNQNGLIFSADPKKSAC  389 (769)
Q Consensus       319 PlLf~l~~~~l~~~l~----~~~~~~~yADD~~l~~~~~~~~~~~~~lq~~l~~l~~w~~~~GL~in~~~~Kt~~  389 (769)
                      |+|.|+|++++.+.+.    .+...+.||||+++++.+      .+..+..++.+..|     +++|  ++||.+
T Consensus       314 PLLANIYLheLDkel~~~l~kd~~LVRYADDFVIi~~S------ke~Aerfl~~Lkg~-----leLN--pEKTrI  375 (596)
T 3kyl_A          314 GCLCELYMAFMDRLYFSNLDKDAFIHRTVDDYFFCSPH------PHKVYDFELLIKGV-----YQVN--PTKTRT  375 (596)
T ss_dssp             HHHHHHHHHHHHHHHSTTSCTTSEEEECSSEEEEEESC------HHHHHHHHHHHHHH-----SCEE--EEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhccCceEEEEcCcEEEEECC------HHHHHHHHHHhhCc-----ceEC--chhcee
Confidence            9999999999998763    467889999999999986      44455555555544     3999  999986
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B Back     alignment and structure
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ... Back     alignment and structure
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A Back     alignment and structure
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A Back     alignment and structure
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A Back     alignment and structure
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ... Back     alignment and structure
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A* Back     alignment and structure
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus} Back     alignment and structure
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum} Back     alignment and structure
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A Back     alignment and structure
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A Back     alignment and structure
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism} Back     alignment and structure
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis} Back     alignment and structure
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A Back     alignment and structure
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ... Back     alignment and structure
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ... Back     alignment and structure
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2 Back     alignment and structure
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.80A {Human rhinovirus 14} SCOP: e.8.1.4 Back     alignment and structure
>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent, polym terminus, transferase; 2.00A {Human poliovirus 1} SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A* 2im0_A* 2im1_A* 2im2_A* 2im3_A* 2ijf_A 3ol9_A* 3ol7_A 3ol8_A 3ol6_A* 3ola_A* 3olb_A* 1tql_A 1rdr_A 1raj_A 3ddk_A 3cdu_A 3cdw_A Back     alignment and structure
>3uqs_A RNA-dependent RNA polymerase; transferase; 2.00A {Murine norovirus} PDB: 3ur0_A* 3upf_A* 3sfg_A* 3nah_A 3nai_A 3qid_A* 3sfu_A* Back     alignment and structure
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A* Back     alignment and structure
>2ckw_A RNA-directed RNA polymerase; hydrolase, nucleotide-binding, nucleotidyltransferase, covalent protein-RNA linkage, RNA elongation; 2.3A {Sapporo virus} PDB: 2uuw_A 2wk4_A 2uut_A Back     alignment and structure
>1u09_A Polyprotein; protein-DNA complex, RNA-dependent RNA polymerase, foot and disease virus, transferase; 1.91A {Foot-and-mouth disease virus} SCOP: e.8.1.4 PDB: 1wne_A 2e9r_X* 2e9t_A* 2e9z_A* 2ec0_A 3kmq_A 3kms_A 3koa_A 3kna_A 3klv_A 3nky_A 3nma_A 2f8e_X* 2d7s_A* 3nl0_A Back     alignment and structure
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral replication, antiviral E inhibitor, helicase, hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A Back     alignment and structure
>3n6m_A RNA-dependent RNA polymerase; EV71, RDRP, GTP, transferase; HET: GTP; 2.50A {Human enterovirus 71} SCOP: e.8.1.4 PDB: 3n6l_A* 3n6n_A* Back     alignment and structure
>1khv_A RNA-directed RNA polymerase; RNA-dependent RNA polymerase, transferase; 2.50A {Rabbit hemorrhagic disease virus} SCOP: e.8.1.4 PDB: 1khw_A Back     alignment and structure
>2ijd_1 Picornain 3C, RNA-directed RNA polymerase; RNA-dependent RNA polymerase, picornavirus, protease, hydrolase, transferase; 3.40A {Human poliovirus 1} SCOP: b.47.1.4 e.8.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 769
d1mu2a1126 c.55.3.1 (A:430-555) HIV RNase H (Domain of revers 0.002
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Length = 126 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 637 CIYLPHSKFLLVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHC 696
            +     K  ++ DS   +  +A+  +  ++ + ++I    +      + + + W P+H 
Sbjct: 55  ALTDSGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIK----KEAIYVAWVPAHK 110

Query: 697 GISGNEAVDMAAK 709
           GI GN+ VD    
Sbjct: 111 GIGGNQEVDHLVS 123

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query769
d1mu2a1126 HIV RNase H (Domain of reverse transcriptase) {Hum 99.38
d1rila_147 RNase H (RNase HI) {Thermus thermophilus [TaxId: 2 99.22
d1jl1a_152 RNase H (RNase HI) {Escherichia coli [TaxId: 562]} 99.14
d1s1ta1110 HIV RNase H (Domain of reverse transcriptase) {Hum 98.28
d1ztwa1255 MMLV reverse transcriptase {Moloney murine leukemi 98.03
d2zd1b1424 HIV-1 reverse transcriptase {Human immunodeficienc 97.93
d1mu2a2427 HIV-1 reverse transcriptase {Human immunodeficienc 97.77
d1zbfa1132 BH0863-like Ribonuclease H {Bacillus halodurans [T 96.65
d1hara_216 HIV-1 reverse transcriptase {Human immunodeficienc 95.69
d1khva_497 Viral RNA polymerase {Rabbit hemorrhagic disease v 93.59
d1sh0a_502 Viral RNA polymerase {Norwalk virus [TaxId: 11983] 86.11
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=99.38  E-value=2.6e-13  Score=121.02  Aligned_cols=67  Identities=19%  Similarity=0.347  Sum_probs=52.9

Q ss_pred             CCeEEEEcCcHHHHHHHHccCcCCCcchHHHHHHHHHHHhcCCceEEEEEecCCCCCccchhhhhhhhCcC
Q psy5607         642 HSKFLLVSDSMSAIQAIANICSSYKNSLTSKIYSAWMDLKSGGKEVTLMWCPSHCGISGNEAVDMAAKNPC  712 (769)
Q Consensus       642 ~~~~~i~tDs~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~wvp~H~gi~gNe~aD~~Ak~a~  712 (769)
                      ..++.|+|||+++++.+.++..........   +.+..+. ....|.|.|||||+|++|||+||+||++|.
T Consensus        60 ~~~i~I~tDS~~v~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~v~~~wV~gH~g~~gNe~AD~LA~~ai  126 (126)
T d1mu2a1          60 GPKVNIIVDSQYVMGIVASQPTESESKIVN---QIIEEMI-KKEAIYVAWVPAHKGIGGNQEVDHLVSQGI  126 (126)
T ss_dssp             CSEEEEEESCHHHHHHHHTCCSEESCHHHH---HHHHHHH-HCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred             CcceEEEechHHHHHHHhcCCccccchHHH---HHHHHhh-hcceeEEEEEeCCCCCcchHHHHHHHHhhC
Confidence            678999999999999999876654333332   3333343 345899999999999999999999999984
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]} Back     information, alignment and structure
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]} Back     information, alignment and structure
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId: 11983]} Back     information, alignment and structure