Diaphorina citri psyllid: psy6178

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910--

MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYR

ccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHc

****PSLDTVYAVVHTLYLNPNKT**EKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQI*******SDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKN*********PEQLIEFHSQVTRSESAYDVGQALKELSRLYR

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Transportin-3	Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.	confident	Q9Y5L0
Transportin-3	Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.	confident	Q6P2B1
Uncharacterized protein C11G11.07		confident	Q9USZ2

Prediction of Gene Ontology Terms

GO Term	Description	Confidence Level	Parent GO Terms
GO:0005737 [CC]	cytoplasm	probable	GO:0044424, GO:0005575, GO:0044464, GO:0005623, GO:0005622
GO:0005730 [CC]	nucleolus	probable	GO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0035048 [BP]	splicing factor protein import into nucleus	probable	GO:0034504, GO:0051169, GO:0008104, GO:0044699, GO:0070727, GO:0006886, GO:0006810, GO:0071702, GO:0051641, GO:0017038, GO:0034613, GO:0006606, GO:0006913, GO:0006605, GO:0045184, GO:0015031, GO:0044765, GO:0051170, GO:0051649, GO:0044744, GO:0051234, GO:0051179, GO:0016482, GO:0033036, GO:0046907, GO:0044763, GO:0033365, GO:0008150, GO:0009987

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2X19, chain B
Confidence level:very confident
Coverage over the Query: 1-790,810-912
View the alignment between query and template
View the model in PyMOL

Template: 3IBV, chain A
Confidence level:very confident
Coverage over the Query: 5-785,802-807,822-870,881-897
View the alignment between query and template
View the model in PyMOL