Psyllid ID: psy6178

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910--

MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYR

ccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHc

ccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcc

MESQPSLDTVYAVVHTLylnpnktekEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFfelpseshvSLRDSLIEHLcrtndtsgKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCqancgdnvSLQTKVLKCFtswssgslhdAATDCVSALLPileynnnfdaVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVnesmtkqqpfsiKALDLVLICVGHhdyeatnlgglVASITFRLWYRLSEILyvknddsltvlfKPHVERLIGALCKHcqlepdleglleedhdfyDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKnvlpeendvVPKVVEAIlhlppsthIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHClqqpglasvTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKqikpeknkksdpvIWLDRLAAIFkhtsprimsephpcqgvitelwpVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYskhphssflyLGSILVDEYATSHCVSGLLDMvqaflpptyailqeedglknhpdtVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIhnnrvlsdkdgkkkavseEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTisqlpkntpagmnaatpEQLIEFHSQVTRSESAYDVGQALKELSRLYR

mesqpsldtVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESmtkqqpfsIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIekqikpeknkksdpviWLDRLAAIFKHTsprimsephpCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHnnrvlsdkdgkkkAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQvtrsesaydVGQALKELSRLYR

MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQlalaladlalQMSAWEKPVVYIIEKLSHKGSIlallevltvlpeevnvlKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQlepdleglleedhdFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYR

*******DTVYAVVHTLYLNPNKT***KASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQI********DPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVL******************HRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTI***********************************************

****PSLDTVYAVVHTLYL*******EKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELI***********SDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKN*********PEQLIEFHSQVTRSESAYDVGQALKELSRLYR

********TVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYR

****PSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLS*******AVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYR

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		912	2.2.26 [Sep-21-2011]
Q6P2B1		923	Transportin-3 OS=Mus musc	yes	N/A	0.972	0.960	0.452	0.0
Q9Y5L0		923	Transportin-3 OS=Homo sap	yes	N/A	0.972	0.960	0.449	0.0
Q9USZ2		955	Uncharacterized protein C	yes	N/A	0.906	0.865	0.239	2e-50
Q8K0C1		963	Importin-13 OS=Mus muscul	no	N/A	0.945	0.895	0.243	7e-50
O94829		963	Importin-13 OS=Homo sapie	no	N/A	0.945	0.895	0.243	1e-49
Q5R974		963	Importin-13 OS=Pongo abel	no	N/A	0.945	0.895	0.242	1e-48
A7YWD2		963	Importin-13 OS=Bos taurus	no	N/A	0.947	0.897	0.244	1e-47
Q9JM04		963	Importin-13 OS=Rattus nor	no	N/A	0.947	0.897	0.240	1e-47
Q99189		972	mRNA transport regulator	yes	N/A	0.878	0.824	0.240	4e-45
Q5ZIC8		958	Importin-13 OS=Gallus gal	no	N/A	0.947	0.901	0.235	3e-40

>sp\|Q6P2B1\|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1	Back alignment and function desciption

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/943 (45%), Positives = 616/943 (65%), Gaps = 56/943 (5%)

Query: 3   SQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVY 62
           ++P+L  VY  V  LY +P+ + KE+AS WL +LQ+S++AW+I+D++L  Q    +E+ Y
Sbjct: 4   AKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLL--QIRQDVESCY 61

Query: 63  FSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS 122
           F+AQTM+ K+Q +F+ELP++SH SLRDSL+ H+    D S   I+TQLALA+ADLALQM 
Sbjct: 62  FAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLS-PVIVTQLALAIADLALQMP 120

Query: 123 AWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEVN--VLKLGKNRREEFEEELKAAGPIV 179
           +W+  V  ++EK S+   S+  LLE+LTVLPEEV+   L++G NRR E  E+L      V
Sbjct: 121 SWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTV 180

Query: 180 IEFLKTCQANCGDNVSLQTKVLKCFTSW----------------------------SSGS 211
           +  L TC    G +  +  KV +C  SW                            +S +
Sbjct: 181 VSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQDKTSSN 240

Query: 212 LHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFT 271
           LH+AA+DCV + L  +E       + + +F  +L+LE  +HMAVA EDL+K +NYC++FT
Sbjct: 241 LHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFT 300

Query: 272 ELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSE 331
           EL E+ L++IV      Q    ++ L+L+LIC GH  YE       V  I+F  WYRL E
Sbjct: 301 ELCETFLEKIV--CTPGQGLGDLRTLELLLICAGHPQYE-------VVEISFNFWYRLGE 351

Query: 332 ILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVV 391
            LY  ND+ +  +FK +++RL+ AL +HCQLEPD EG+ EE  DF +FR++VS+LVKD++
Sbjct: 352 HLYKTNDEVIHSIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLI 411

Query: 392 FIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPP 451
           F++GS  CF  ++++L E N  WE TEA L+IM ++AK+V PE N  + +V+E ++HLP 
Sbjct: 412 FLIGSMECFAQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVHLPE 471

Query: 452 STHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACC 511
           + H AVRYTS+ L+GE+ E +D++P  L+ +L +L+  L +  LAS  A A+ +I + C 
Sbjct: 472 TVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVCR 531

Query: 512 THMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKP 571
            HM  HFNGLL+I   LD+  +S +AA+GLLKG A++++ +P D+I+E L +LC VQV  
Sbjct: 532 DHMAQHFNGLLEIAHSLDSFMLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMA 591

Query: 572 LCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMS-EPHPCQGVITELWPVLSKTC 630
           L +L+ ++  P     SDP ++LDRLA IF+HT+P + + + HPCQ VI E+WPVLS+T 
Sbjct: 592 LKKLLSQE--PSNGISSDPTVFLDRLAVIFRHTNPIVENGQTHPCQKVIQEIWPVLSETL 649

Query: 631 ETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVD 690
             ++ D R++E   RCLR+A+RCVGK  A LL+PLV Q+V +Y  H HS FLYLGSILVD
Sbjct: 650 NKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVD 709

Query: 691 EYATSH-CVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLT 749
           EY     C  GLLDM+QA   PT+ +L++++GL+NHPDTVDDLFRL TRF+QR+P+  L 
Sbjct: 710 EYGMEEGCRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLR 769

Query: 750 SSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHR 809
           S  +  ++Q  I +T LDHR+ANS+VM+F  DLIH   V +D         EEDF++R  
Sbjct: 770 SQVVIPILQWAIASTTLDHRDANSSVMRFLRDLIHTG-VANDH--------EEDFELRKE 820

Query: 810 LMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLP 869
           L+  ++S+ GQ LVS LL  C F L  Y + DVA+VL+E++ VDR    +WL++++  LP
Sbjct: 821 LIGQVMSQLGQQLVSQLLHTCCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLP 880

Query: 870 KNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYR 912
           K T  G    T +QL +FH QVT +E    V  AL++ +RL+R
Sbjct: 881 KETTVGAVTVTHKQLTDFHKQVTSAEECKQVCWALRDFTRLFR 923

Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Mus musculus (taxid: 10090)

>sp\|Q9Y5L0\|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3	Back alignment and function description

>sp\|Q9USZ2\|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2	Back alignment and function description

>sp\|Q8K0C1\|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|O94829\|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3	Back alignment and function description

>sp\|Q5R974\|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|A7YWD2\|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q9JM04\|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|Q99189\|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1	Back alignment and function description

>sp\|Q5ZIC8\|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		912
156543529		948	PREDICTED: transportin-3-like [Nasonia v	0.979	0.941	0.541	0.0
383865979		955	PREDICTED: transportin-3 [Megachile rotu	0.979	0.935	0.551	0.0
380021560		950	PREDICTED: transportin-3 [Apis florea]	0.980	0.941	0.549	0.0
340728386		953	PREDICTED: transportin-3-like [Bombus te	0.976	0.934	0.540	0.0
350402957		951	PREDICTED: transportin-3-like [Bombus im	0.980	0.940	0.535	0.0
307213698		952	Transportin-3 [Harpegnathos saltator]	0.980	0.939	0.524	0.0
91080171		936	PREDICTED: similar to transportin [Tribo	0.979	0.954	0.518	0.0
307181092		921	Transportin-3 [Camponotus floridanus]	0.933	0.923	0.541	0.0
270005671		917	hypothetical protein TcasGA2_TC007765 [T	0.958	0.953	0.519	0.0
332024645		887	Transportin-3 [Acromyrmex echinatior]	0.905	0.931	0.534	0.0

>gi\|156543529\|ref\|XP_001602761.1\| PREDICTED: transportin-3-like [Nasonia vitripennis]	Back alignment and taxonomy information

 Score = 1048 bits (2711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/967 (54%), Positives = 680/967 (70%), Gaps = 74/967 (7%)

Query: 1   MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEA 60
           M+S PSL+TVY  V++LY NP+  EKE+ASQWL +LQKS+YAWKIADEML  Q +  LE+
Sbjct: 1   MDSMPSLETVYQAVYSLYNNPDTAEKERASQWLGELQKSVYAWKIADEML--QQKKDLES 58

Query: 61  VYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ 120
            YF+AQTMR K+Q +F ELP  SHVSLRDSL++H+ + N  +   I+TQL LALADL LQ
Sbjct: 59  CYFAAQTMRTKIQQSFHELPVVSHVSLRDSLLDHISQINKNTNAIIVTQLCLALADLILQ 118

Query: 121 MSAWEKPVVYIIEKLS-HKGSILALLEVLTVLPEEVN--VLKLGKNRREEFEEELKAAGP 177
           M++W++PV+ +++K   +  S+  LLE+LTVLPEEVN   L+LG NRR+         G 
Sbjct: 119 MASWQEPVIDLLQKFGDNPASLWPLLEILTVLPEEVNSRFLRLGANRRQNIVTNFTNNGN 178

Query: 178 IVIEFLKTCQANCGDNVSLQTKVLKCFTSW----------------------------SS 209
            V+EFL  C  N  D+  +  +VL+CFTSW                            + 
Sbjct: 179 GVLEFLTVCLKNI-DDAQIYVRVLRCFTSWITIHAISLTTPLFNTIITLAFEVLKNNMTG 237

Query: 210 GSLHDAATDCVSALLPILEYNN-------------NFDAVNLNVFTCILSLEEQFHMAVA 256
             LH+AA DCVS +L +LE                +   + L++F+ IL+LE+ +H++VA
Sbjct: 238 SQLHEAAADCVSIVLQVLEEETLRNRDPHTGDPVASLQQLQLDLFSRILNLEQPYHVSVA 297

Query: 257 HEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGG 316
           HED++K  NYC++FTEL+E+ L+ IVN SM  +Q ++IK LD  L+CVGHHDYE      
Sbjct: 298 HEDMDKSTNYCRIFTELSETFLETIVNGSMNGKQHYAIKCLDFALMCVGHHDYE------ 351

Query: 317 LVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDF 376
            VA ITF LWYRLSEILY +N+D LT++FKPH+ERLIGALC+HCQ+EPD  GL+E+   F
Sbjct: 352 -VAQITFNLWYRLSEILYQRNNDDLTLVFKPHIERLIGALCRHCQMEPDHLGLIEDGDGF 410

Query: 377 YDFRLKVSELVKDVVFIVGSSTCFRHMFNSL--------HENNVMWEQTEAALYIMQSVA 428
            +FR++V EL+KDVVF+VGSS CFR MF++L          +   W+ TEAAL++M +VA
Sbjct: 411 GEFRMRVFELIKDVVFVVGSSHCFRQMFSTLTGGHGTPGQTSAPTWDMTEAALFVMHAVA 470

Query: 429 KNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLH 488
           KN+LPEENDVVPKVVEAIL+LP +THIAVR+TS+LLLGELCEWI+ HP +LE ILNFLL+
Sbjct: 471 KNILPEENDVVPKVVEAILNLPENTHIAVRHTSILLLGELCEWINSHPQSLEPILNFLLN 530

Query: 489 CLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAII 548
           CL Q GL S  +NALQSI TAC  HM  HF GLLQI + LD  +ISN+AAIGLLKGVA I
Sbjct: 531 CLSQKGLGSAASNALQSICTACPKHMASHFQGLLQIARSLDNFAISNEAAIGLLKGVAKI 590

Query: 549 VSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRI 608
           +S +P+ +I  A+K+LC  Q +PLC+LIE+++   +  K+DPV+WLDRLAAIF+HT P I
Sbjct: 591 MSSIPKGEIDRAMKELCWFQARPLCQLIEQRVPVVRASKTDPVLWLDRLAAIFRHTVPHI 650

Query: 609 --MSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLV 666
              ++ HPC G I E+WPVLS TC TYQQD RVME   RCL++ +RC+GK  AHLLEPLV
Sbjct: 651 DDCNDTHPCLGAINEMWPVLSNTCTTYQQDQRVMERCCRCLKFLVRCLGKQSAHLLEPLV 710

Query: 667 KQIVVLYSKHPHSSFLYLGSILVDEYATS-HCVSGLLDMVQAFLPPTYAILQEEDGLKNH 725
           KQI+ LY+ H HS FLYLGSILVD +      VSGLL M++AFL PT+ ILQE DGLKNH
Sbjct: 711 KQIIQLYAGHQHSCFLYLGSILVDVFGNDMEYVSGLLGMLEAFLGPTFTILQETDGLKNH 770

Query: 726 PDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHN 785
           PDTVDDLFRLC RFLQ  P+ FL S+ I+S++ C ++A  LDHR+AN++VMKFF+DLIH+
Sbjct: 771 PDTVDDLFRLCARFLQTTPVPFLHSTMINSILDCALMACSLDHRDANASVMKFFFDLIHS 830

Query: 786 NRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADV 845
            R          + +  DF +R +L++DI+ + GQALV  LL A VFSL TYMM+DVADV
Sbjct: 831 GR---------NSENRSDFTIRRQLVQDILGEKGQALVMRLLHAAVFSLSTYMMSDVADV 881

Query: 846 LYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALK 905
           + EL    R+  + WL+  I Q+P     G  AATP+QL+EFHS VT +++   V  AL+
Sbjct: 882 IVELTLTSREHISLWLEQAIHQMPMENAGGTPAATPDQLLEFHSTVTGADNPKTVVHALR 941

Query: 906 ELSRLYR 912
             +RLYR
Sbjct: 942 NFTRLYR 948

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|383865979\|ref\|XP_003708449.1\| PREDICTED: transportin-3 [Megachile rotundata]	Back alignment and taxonomy information

>gi\|380021560\|ref\|XP_003694631.1\| PREDICTED: transportin-3 [Apis florea]	Back alignment and taxonomy information

>gi\|340728386\|ref\|XP_003402506.1\| PREDICTED: transportin-3-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350402957\|ref\|XP_003486657.1\| PREDICTED: transportin-3-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|307213698\|gb\|EFN89047.1\| Transportin-3 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|91080171\|ref\|XP_970238.1\| PREDICTED: similar to transportin [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|307181092\|gb\|EFN68837.1\| Transportin-3 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|270005671\|gb\|EFA02119.1\| hypothetical protein TcasGA2_TC007765 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|332024645\|gb\|EGI64842.1\| Transportin-3 [Acromyrmex echinatior]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		912
FB\|FBgn0031456		932	Trn-SR "Transportin-Serine/Arg	0.747	0.731	0.477	1.8e-207
ZFIN\|ZDB-GENE-040426-708		923	tnpo3 "transportin 3" [Danio r	0.751	0.742	0.471	3.7e-207
MGI\|MGI:1196412		923	Tnpo3 "transportin 3" [Mus mus	0.748	0.739	0.459	8.1e-203
RGD\|1308938		929	Tnpo3 "transportin 3" [Rattus	0.755	0.741	0.458	2.1e-202
UNIPROTKB\|A5D7C4		923	TNPO3 "TNPO3 protein" [Bos tau	0.748	0.739	0.455	1.2e-201
UNIPROTKB\|Q9Y5L0		923	TNPO3 "Transportin-3" [Homo sa	0.748	0.739	0.455	5.1e-201
UNIPROTKB\|C9J7E5		957	TNPO3 "Uncharacterized protein	0.570	0.543	0.438	2.4e-200
UNIPROTKB\|F1SMQ0		921	TNPO3 "Uncharacterized protein	0.731	0.724	0.450	9.8e-196
UNIPROTKB\|E9PFH4		857	TNPO3 "Transportin-3" [Homo sa	0.748	0.796	0.455	6e-185
UNIPROTKB\|H9L0A9		855	H9L0A9 "Uncharacterized protei	0.492	0.525	0.443	1.8e-160

FB\|FBgn0031456 Trn-SR "Transportin-Serine/Arginine rich" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1691 (600.3 bits), Expect = 1.8e-207, Sum P(2) = 1.8e-207
 Identities = 343/719 (47%), Positives = 483/719 (67%)

Query:   208 SSGSLHDAATDCVSALLPILEYNNNF-----DAVNLNVFTCILSLEEQFHMAVAHEDLEK 262
             +SG LHD AT+CV ALL  +    +       +    +F  +  LE  +H++VAHED +K
Sbjct:   237 TSGKLHDNATECVCALLSCINTRQDGASDPESSFEAQLFGAVCMLETPYHLSVAHEDTDK 296

Query:   263 CMNYCKLFTELAESLLDRIVNESMTKQQP-FSIKALDLVLICVGHHDYEATNLGGLVASI 321
              +NYC++FT L ++    ++ ++   Q+P +S+K LDLVL+CVGH DYE       VA I
Sbjct:   297 TINYCRIFTSLCDAFFYDLLADA---QKPHYSLKGLDLVLLCVGHFDYE-------VAEI 346

Query:   322 TFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQXXXXXXXXXXXXXXFYDFRL 381
             TF LWY+LSE L+ +N+D LTVLF+PH+ERLI AL +H Q              F+DFR 
Sbjct:   347 TFHLWYKLSEDLFQRNEDKLTVLFRPHIERLISALFRHSQMESDHDGLIEENNNFFDFRR 406

Query:   382 KVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPK 441
             KVS+L+KDV FIVGS  CF+ MF+ L      WE TEAAL+IMQ+VAKN+LP+EN+V+PK
Sbjct:   407 KVSDLIKDVAFIVGSGACFKQMFHILQAPETTWESTEAALFIMQNVAKNILPDENEVIPK 466

Query:   442 VVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQP-GLASVTA 500
             VVEAIL++   THIAVRYT++LL+GELC+WI+ HP +LE +LNFLL+ LQQ  GLA   A
Sbjct:   467 VVEAILNMSEQTHIAVRYTAILLIGELCDWIENHPESLEAVLNFLLYALQQKNGLAPAAA 526

Query:   501 NALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEA 560
              AL SI +AC   MV H +GL++I + LD+  I+ND AIGLLKG+++I++ +P++Q+  A
Sbjct:   527 IALTSICSACRQKMVCHISGLVEIARSLDSFQINNDVAIGLLKGISLILTRLPREQLQPA 586

Query:   561 LKQLCLVQVKPLCELIEKQ-IKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSE-PHPCQGV 618
             L+++   Q++PL +L++     P+K +++DPV W+DR  AI +HT+P +     HP   +
Sbjct:   587 LREIVGFQLQPLAQLVDSTGSTPQKGERTDPVYWIDRACAIIRHTNPDVPDNVEHPTVAI 646

Query:   619 ITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPH 678
             + + W ++S+  + YQ D R+ME + R +RY IR V K    L+EPL+KQ+VVLYS   H
Sbjct:   647 LNDAWQLISRVMDKYQSDLRIMERTCRLIRYGIRMVRKQAMMLVEPLIKQMVVLYSVQHH 706

Query:   679 SSFLYLGSILVDEYA-TSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCT 737
             S FLY+GSILVDE+A +S C+ GLL+M+QAF+ PT+ +LQ E+GLKN+PDTVDD FRL +
Sbjct:   707 SCFLYVGSILVDEFAKSSECIGGLLEMLQAFIEPTFGLLQMENGLKNNPDTVDDFFRLAS 766

Query:   738 RFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKK 797
             R+L   P   L SS I+ + QC ++A  LDHREANS+VMKFF +L+   R  S+   +  
Sbjct:   767 RYLDCCPHQLLQSSLITPIFQCALIACSLDHREANSSVMKFFINLLVWGR--SNNHSRNT 824

Query:   798 AVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVS 857
                    + R  L+ ++ S+HG ALV NL+QA VF LH+YM+ DVA+VL+EL  V   V 
Sbjct:   825 -------ECRP-LVVELASQHGGALVMNLIQASVFQLHSYMLVDVAEVLHELKQV---VG 873

Query:   858 NQWLQDTISQ----LPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYR 912
             N+ +Q  ++Q    LPK    G   AT +QL EF S V R+++   + QALK  +RL+R
Sbjct:   874 NERMQPFLAQALEALPKKNSGGYVTATQQQLDEFSSTVLRADTTKAISQALKTFTRLFR 932

GO:0006406 "mRNA export from nucleus" evidence=ISS

GO:0006606 "protein import into nucleus" evidence=ISS

GO:0035048 "splicing factor protein import into nucleus" evidence=IDA;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN\|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PFH4 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|H9L0A9 H9L0A9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99189	MTR10_YEAST	No assigned EC number	0.2400	0.8782	0.8240	yes	N/A
Q9USZ2	YNR7_SCHPO	No assigned EC number	0.2396	0.9067	0.8659	yes	N/A
Q9Y5L0	TNPO3_HUMAN	No assigned EC number	0.4496	0.9725	0.9609	yes	N/A
Q6P2B1	TNPO3_MOUSE	No assigned EC number	0.4528	0.9725	0.9609	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		912
pfam08389		147	pfam08389, Xpo1, Exportin 1-like protein	9e-14
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	1e-04

>gnl\|CDD\|219817 pfam08389, Xpo1, Exportin 1-like protein	Back alignment and domain information

 Score = 69.2 bits (170), Expect = 9e-14
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 104 KNIITQLALALADLALQM--SAWEKPVVYIIEKL-SHKGSILALLEVLTVLPEEV---NV 157
           K I  +LALALA+LA Q   S W      ++  L S       LL +L VLPEE+   + 
Sbjct: 2   KFIRNKLALALAELAKQEWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFDFSR 61

Query: 158 LKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVS-LQTKVLKCFTSW-SSGSL-HD 214
             L + RR   ++ L++  P ++E L     N     S L +  LKC  SW S   +   
Sbjct: 62  TPLTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSELLSATLKCLGSWLSWIPIGLI 121

Query: 215 AATDCVSALLPILEYNNNFDA 235
                ++ L  +L   +  +A
Sbjct: 122 LNDPLLNLLFQLLSDPDLREA 142

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		912
KOG2022\|consensus		982		100.0
KOG2081\|consensus		559		100.0
KOG2021\|consensus		980		100.0
KOG2023\|consensus		885		100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2171\|consensus		1075		100.0
KOG1241\|consensus		859		100.0
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.97
KOG1991\|consensus		1010		99.97
KOG2020\|consensus		1041		99.96
KOG1992\|consensus		960		99.93
KOG2274\|consensus		1005		99.84
COG5656		970	SXM1 Importin, protein involved in nuclear import	99.8
KOG1410\|consensus		1082		99.79
KOG1993\|consensus		978		99.64
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	99.55
KOG2171\|consensus		1075		99.52
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.36
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	99.35
KOG1241\|consensus		859		99.28
KOG1824\|consensus		1233		99.1
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	98.93
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.85
KOG2023\|consensus		885		98.85
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	98.63
KOG0915\|consensus		1702		98.42
KOG1242\|consensus		569		98.37
KOG4541\|consensus		748		98.3
KOG1824\|consensus		1233		98.16
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.88
KOG0213\|consensus		1172		97.83
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	97.74
KOG0915\|consensus		1702		97.65
KOG1991\|consensus		1010		97.5
KOG0212\|consensus		675		97.38
PTZ00429		746	beta-adaptin; Provisional	97.36
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.05
KOG1062\|consensus		866		96.89
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.77
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.54
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.49
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.41
KOG1248\|consensus		1176		96.06
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.96
KOG0213\|consensus		1172		95.83
KOG1059\|consensus		877		95.65
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.63
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	95.43
KOG2274\|consensus		1005		95.42
KOG1242\|consensus		569		95.29
PTZ00429		746	beta-adaptin; Provisional	95.23
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	94.94
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	94.83
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.7
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.09
KOG2956\|consensus		516		94.06
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	93.32
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	93.23
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	93.1
KOG0166\|consensus		514		93.0
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	92.53
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.51
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	92.13
KOG0168\|consensus		1051		92.08
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	92.02
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	91.53
KOG1059\|consensus		877		91.38
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	91.32
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	90.94
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	90.94
KOG4653\|consensus		982		90.88
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	90.81
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	90.8
KOG1992\|consensus		960		89.8
KOG0212\|consensus		675		89.59
KOG1058\|consensus		948		89.45
KOG1943\|consensus		1133		89.43
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	88.15
KOG1060\|consensus		968		88.07
KOG1240\|consensus		1431		87.43
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	87.07
KOG1058\|consensus		948		87.06
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	86.87
PRK09687		280	putative lyase; Provisional	86.76
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	86.08
KOG1248\|consensus		1176		85.64
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	84.98
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	84.96
KOG4524\|consensus		1014		84.96
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	84.64
KOG0166\|consensus		514		83.78
KOG1060\|consensus		968		83.77
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	82.8
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	82.28
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	82.09
KOG2160\|consensus		342		81.86
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	81.7
KOG1240\|consensus		1431		81.45
PF08623		169	TIP120: TATA-binding protein interacting (TIP20);	81.21
KOG1943\|consensus		1133		80.65

>KOG2022\|consensus	Back alignment and domain information

Probab=100.00  E-value=2.4e-95  Score=788.20  Aligned_cols=878  Identities=18%  Similarity=0.281  Sum_probs=738.4

Q ss_pred             CCCCccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCC
Q psy6178           1 MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELP   80 (912)
Q Consensus         1 m~~~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~   80 (912)
                      |+ +..++.|++++..+|++++++.+..+++||+++|++|+||++++.|++..+.  .++|||||.||+.||+++|+++|
T Consensus         1 md-~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~--~evqyFGAltL~~ki~~~~e~~~   77 (982)
T KOG2022|consen    1 MD-SDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS--SEVQYFGALTLHDKINTRWEECP   77 (982)
T ss_pred             CC-chHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch--hHHHHHhHHHHHHHHHhhhccCC
Confidence            77 6789999999999999999999999999999999999999999999999887  89999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhc-c-CcchHHHHHHHHhccc--------chHHHHHHHHhh
Q psy6178          81 SESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK--------GSILALLEVLTV  150 (912)
Q Consensus        81 ~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~-~-~W~~~~~~l~~~~~~~--------~~~~~~L~iL~~  150 (912)
                      ++++..||..++..+.+++.+ |+.|.||+|.++|.+.+++ + .||+++.+++..++.+        ..++++|++|+.
T Consensus        78 ~~~~~qL~~klf~~l~~~~g~-~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~  156 (982)
T KOG2022|consen   78 ANEAVQLKLKLFLILSRFAGG-PKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSF  156 (982)
T ss_pred             hhHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhcc
Confidence            999999999999999998755 6899999999999999976 4 7999999999999764        346899999999


Q ss_pred             hhhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCC--Ch----HHHHHHHHHHHhhcC---------------
Q psy6178         151 LPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGD--NV----SLQTKVLKCFTSWSS---------------  209 (912)
Q Consensus       151 l~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~--~~----~~~~~~l~~l~sWi~---------------  209 (912)
                      +|+|..+.+++..+|..++..+......+..++..+++.+..  ..    -.+..+++|..+|+.               
T Consensus       157 ~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~  236 (982)
T KOG2022|consen  157 MPAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQV  236 (982)
T ss_pred             CcHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHH
Confidence            999999988888899999999999999999999988887541  12    357889999999991               


Q ss_pred             ---------CcchHHHHHHHHh---hch------------hhhccCCchHHHHHHHHHHhc-hHHHHH--HHhcCCC--h
Q psy6178         210 ---------GSLHDAATDCVSA---LLP------------ILEYNNNFDAVNLNVFTCILS-LEEQFH--MAVAHED--L  260 (912)
Q Consensus       210 ---------~~l~~~a~~~l~~---~l~------------~~~~~~~~~~l~~~l~~~v~~-l~~~~~--~~~~~~d--~  260 (912)
                               ...++++-+|+..   .+.            .... ..+...+..+++.... +.+...  +...+.|  +
T Consensus       237 ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~-~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~  315 (982)
T KOG2022|consen  237 LLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDC-EFYRNTITLLISICLGILQEVSGKIQEEENADASE  315 (982)
T ss_pred             HHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHH-HhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence                     0111222222111   110            0000 0111223333333222 222211  3455667  6


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHhcccCC-CcchhhHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCch
Q psy6178         261 EKCMNYCKLFTELAESLLDRIVNESMTK-QQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDD  339 (912)
Q Consensus       261 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~-~~~~~~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~  339 (912)
                      +....++++++..+|++.+.+.++..++ +..-..++++.|+.|++.|+...  +.|.+|..++.||+++.+++.....+
T Consensus       316 e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~yp--veE~~S~~~l~FW~tL~dei~~~~~e  393 (982)
T KOG2022|consen  316 EEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYP--VEEIVSDRTLIFWYTLQDEIMQTINE  393 (982)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCcc--HHHHHhHHHHHHHHHHHHHHHHhhhc
Confidence            7889999999999999999988765222 22223567899999998876541  44889999999999999987754322


Q ss_pred             ---hhhhcch-HHHHHHHHHHHhhcCCCCCC---CCCccccchHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc--C
Q psy6178         340 ---SLTVLFK-PHVERLIGALCKHCQLEPDL---EGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE--N  410 (912)
Q Consensus       340 ---~~~~~~~-~~~~~ll~~l~~k~~~p~d~---~~~~ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~--~  410 (912)
                         .....++ |+|.+|++++++|+.+|.++   +|.+|+++.|+.||++++|+++++|.++|+ ..++.+...+.+  +
T Consensus       394 ~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd-~ll~~L~~~l~q~~a  472 (982)
T KOG2022|consen  394 TQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGD-GLLDFLIDTLEQALA  472 (982)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhh
Confidence               2334455 99999999999999999876   578899999999999999999999999995 477777777765  1


Q ss_pred             -----CCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHH
Q psy6178         411 -----NVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPP-STHIAVRYTSLLLLGELCEWIDKHPHTLETILN  484 (912)
Q Consensus       411 -----~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~-~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~  484 (912)
                           ..+|.+.|+|+|++.++++.+..++++.++++|++..+.+. ..+|.+..|+..+||.++.|++.||.+|.+.++
T Consensus       473 a~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~  552 (982)
T KOG2022|consen  473 AGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLP  552 (982)
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHH
Confidence                 24599999999999999999998889999999999877764 358999999999999999999999999999999


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhh-cCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy6178         485 FLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDT-LSISNDAAIGLLKGVAIIVSDMPQDQISEALKQ  563 (912)
Q Consensus       485 ~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~-~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~  563 (912)
                      .+++++++++....|...+.+||++|+.+|.||+++|+..+..+.. ....+.++.++|.+||+|++...+|+..+++.+
T Consensus       553 ~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~  632 (982)
T KOG2022|consen  553 LLFQGLHNSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK  632 (982)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence            9999999999888888899999999999999999999999886543 345666899999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcC-------------CCCCChHHHHHhHhHHHHHHH
Q psy6178         564 LCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIM-------------SEPHPCQGVITELWPVLSKTC  630 (912)
Q Consensus       564 l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-------------~~~~~~~~~~~~~~~~l~~~l  630 (912)
                      +++|+++.++.++.... +....+....+.+.+++++|.++..+.+             ....|++.+.++++|++..++
T Consensus       633 lin~il~qle~~l~~~i-~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~  711 (982)
T KOG2022|consen  633 LINPILSQLEINLAPGI-DDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVL  711 (982)
T ss_pred             HHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHH
Confidence            99999999999876543 1222244566789999999999866543             122378899999999999999


Q ss_pred             HhhccchhHHHHHHHHHHHHHHHhchhh-HHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHh-cCccchHHHHHHHHHH
Q psy6178         631 ETYQQDARVMEHSSRCLRYAIRCVGKDF-AHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEY-ATSHCVSGLLDMVQAF  708 (912)
Q Consensus       631 ~~~~~~~~v~e~~~~~~~~~~~~l~~~~-~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~-g~~~~~~~l~~l~~~l  708 (912)
                      ++|.++.+++|.+|...+++++.++..| .|++|.++.+++. |...+...-+.+...++..+ +++.+.+.+...+...
T Consensus       712 s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~  790 (982)
T KOG2022|consen  712 SMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANA  790 (982)
T ss_pred             HHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence            9999999999999999999999999988 9999999999998 88888777778877776554 4477888888888888


Q ss_pred             hHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCc-hhhHHHHH-HHHHhcccCCchhHHHHHHHHHHHhhcc
Q psy6178         709 LPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS-SFISSVMQ-CGILATHLDHREANSTVMKFFYDLIHNN  786 (912)
Q Consensus       709 ~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~-~~l~~i~~-~~~~~l~~~~~~~~~~~~~fl~~li~~~  786 (912)
                      +++.+-++++. .+.++||+...+|+++..++++.|+.+.++ ..++.++. |+..++..+|+.+++++++||+.|+...
T Consensus       791 ~q~sl~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~  869 (982)
T KOG2022|consen  791 FQQSLLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYA  869 (982)
T ss_pred             HHHHHHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhc
Confidence            88888888886 579999999999999999999999988874 45666555 9999999999999999999999999887


Q ss_pred             CCCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCCcchhhHHHHHHHHHHhChHHHHHHHHHHHh
Q psy6178         787 RVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTIS  866 (912)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~~~~~~~~~wl~~~l~  866 (912)
                      ++++                 ...+.+++.+.|+.|+++++.+++|..|||.++.+||+|++++++|+.+++.|+.++|.
T Consensus       870 ~s~~-----------------~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ld~~aDIL~al~~k~~se~r~wl~~~lq  932 (982)
T KOG2022|consen  870 TSHD-----------------LVTVTSVVAEIGPILIYAIMRGVGGEASRSTLDALADILLALNAKFFSETRTWLKAVLQ  932 (982)
T ss_pred             ccch-----------------hHHHHHHHHhcchHHHHHHHHHhcCcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence            7654                 55789999999999999999999999999999999999999999999999999999996


Q ss_pred             --cCCCCCCCCCCCCCHHHHHHHHHHHhhhhhh-hhHHHHHHHHHhhcC
Q psy6178         867 --QLPKNTPAGMNAATPEQLIEFHSQVTRSESA-YDVGQALKELSRLYR  912 (912)
Q Consensus       867 --~~p~~~~~~~~~~t~~~k~~f~~~l~~~~~~-~~~~~~~~~F~~~cr  912 (912)
                        ++|+.      ++|+++|++|++.+++.|++ |.+++.+.+|+..||
T Consensus       933 ~~gfPs~------~~s~e~k~rf~t~llrer~n~R~~k~~il~~~L~~~  975 (982)
T KOG2022|consen  933 IPGFPSA------GVSNEIKSRFVTSLLRERGNKRNFKQQILEFNLACT  975 (982)
T ss_pred             CCCCCcc------cCChHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhc
Confidence              56654      89999999999999999988 789999999999997

>KOG2081\|consensus	Back alignment and domain information

>KOG2021\|consensus	Back alignment and domain information

>KOG2023\|consensus	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2171\|consensus	Back alignment and domain information

>KOG1241\|consensus	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1991\|consensus	Back alignment and domain information

>KOG2020\|consensus	Back alignment and domain information

>KOG1992\|consensus	Back alignment and domain information

>KOG2274\|consensus	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1410\|consensus	Back alignment and domain information

>KOG1993\|consensus	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG2171\|consensus	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1241\|consensus	Back alignment and domain information

>KOG1824\|consensus	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG2023\|consensus	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG0915\|consensus	Back alignment and domain information

>KOG1242\|consensus	Back alignment and domain information

>KOG4541\|consensus	Back alignment and domain information

>KOG1824\|consensus	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0213\|consensus	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG0915\|consensus	Back alignment and domain information

>KOG1991\|consensus	Back alignment and domain information

>KOG0212\|consensus	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1062\|consensus	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1248\|consensus	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG0213\|consensus	Back alignment and domain information

>KOG1059\|consensus	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG2274\|consensus	Back alignment and domain information

>KOG1242\|consensus	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG2956\|consensus	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG0166\|consensus	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0168\|consensus	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>KOG1059\|consensus	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG4653\|consensus	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>KOG1992\|consensus	Back alignment and domain information

>KOG0212\|consensus	Back alignment and domain information

>KOG1058\|consensus	Back alignment and domain information

>KOG1943\|consensus	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG1060\|consensus	Back alignment and domain information

>KOG1240\|consensus	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1058\|consensus	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG1248\|consensus	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG4524\|consensus	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>KOG0166\|consensus	Back alignment and domain information

>KOG1060\|consensus	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>KOG2160\|consensus	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>KOG1240\|consensus	Back alignment and domain information

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []	Back alignment and domain information

>KOG1943\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		912
2xwu_B		963	Crystal Structure Of Importin 13 - Ubc9 Complex Len		2e-41
2x19_B		963	Crystal Structure Of Importin13 - Rangtp Complex Le		8e-37
2x1g_F		971	Crystal Structure Of Importin13 - Mago-Y14 Complex		7e-11

>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963

Back alignment and structure

Iteration: 1

Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 215/976 (22%), Positives = 401/976 (41%), Gaps = 114/976 (11%) Query: 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSA 65 +++ V +H LY +PN K A +WL Q Q S AW + ++L Q + E YF A Sbjct: 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLL--QPDKVPEIQYFGA 79 Query: 66 QTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQXXXXXXXXXXQM--SA 123 + K+ + ++P++ + SL+ L + R S K ++T+ M A Sbjct: 80 SALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGS-KIVLTRLCVALASLALSMMPDA 138 Query: 124 WEKPVVYIIE-------KLSHKGSIXXXXXXXXXXXXXXXXXKLGKNRREEFEEELKAAG 176 W V ++ + +G +L + R+ L Sbjct: 139 WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVEC 198 Query: 177 PIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDC---VSALLPILEYNNNF 233 V L+ ++ KVLKCF+SW L DC + A L+ + F Sbjct: 199 GAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ--LEVPLQDCEALIQAAFAALQDSELF 256 Query: 234 DA-----------------VN--LNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELA 274 D+ VN L + +L L+EQ AV + D+E C++ L Sbjct: 257 DSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALG 316 Query: 275 ESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILY 334 E+ R + + + Q F + +++++ C G + N +S+T WY L + + Sbjct: 317 ENH-SRALLDQVEHWQSF-LALVNMIMFCTGIPGHYPVN--ETTSSLTLTFWYTLQDDIL 372 Query: 335 VKNDDSLTV---LFKPHVERLIGALCKHCQXXXXXXX---XXXXXXXFYDFRLKVSELVK 388 + V +++P +L+ L Q F +R+ +S+ + Sbjct: 373 SFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLM 432 Query: 389 DVVFIVGSSTCFRHMFNSL------HENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKV 442 V ++G+ ++++ L E W+ TEA LY QS+A+ + +DVVP + Sbjct: 433 YVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGL 491 Query: 443 VEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANA 502 + I + S ++ + T + +G L EW+ HP + ++L +LH L P L+ + + Sbjct: 492 IGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVST 550 Query: 503 LQSISTACCTHMVGHFNGLLQIIQCLDTLSI-SNDAAIGLLKGVAIIVSDMPQDQISEAL 561 L+ I C + + ++ + Q + I + L++ + ++S + Q+ E L Sbjct: 551 LKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL---QVEEIL 607 Query: 562 KQLCLVQVKPLCELIEKQIK--PEKNKKSDPVIWLDRLAAIF----------KHTSPR-- 607 K L + + P + +EK + P + K V L L+ +F H P Sbjct: 608 KNLHSL-ISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELR 666 Query: 608 ---IMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEP 664 + P+P V+ +++ ++ K + DA+V+E +++ + DFA ++ Sbjct: 667 KLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQ 726 Query: 665 LVKQIVVLYSKHPHSSFLYLGSILVDEYATSHC----VSGLLDMVQAFLPPTYAILQEED 720 L + + +YS P +S L L LV +A + L +V + T + Q+ Sbjct: 727 LCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSV---TLTLFQQ-- 781 Query: 721 GLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSF-ISSVMQCGILATHLDHREANSTVMKFF 779 G ++HPD VD +L + L+R P FL + +V QC +LA FF Sbjct: 782 GPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFF 841 Query: 780 YDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMM 839 +L+ + G+ ++V + +V + G+ L+ +L+A +M Sbjct: 842 TELL-------PRCGEVESVGK------------VVQEDGRMLLIAVLEAIGGQASRSLM 882 Query: 840 ADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAA--TPEQLIEFHSQVTRSE-S 896 AD+L+ L + + W+++ + P G +A +PEQ F Q+ R + Sbjct: 883 DCFADILFALNKHCFSLLSMWIKEALQ------PPGFPSARLSPEQKDTFSQQILRERVN 936 Query: 897 AYDVGQALKELSRLYR 912 V + +KE + L R Sbjct: 937 KRRVKEMVKEFTLLCR 952

PyMOL of 2xwu

>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963

Back alignment and structure

>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		912
2x19_B		963	Importin-13; nuclear transport, protein transport;	1e-137
2x1g_F		971	Cadmus; transport protein, developmental protein,	1e-129
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	4e-69
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	3e-65
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	2e-60
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	1e-35
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	8e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	5e-12
1qgr_A		876	Protein (importin beta subunit); transport recepto	3e-11
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	4e-08

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

 Score =  432 bits (1112), Expect = e-137
 Identities = 215/968 (22%), Positives = 399/968 (41%), Gaps = 94/968 (9%)

Query: 4   QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYF 63
             +++ V   +H LY +PN   K  A +WL Q Q S  AW  + ++L  Q +   E  YF
Sbjct: 20  DFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLL--QPDKVPEIQYF 77

Query: 64  SAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQM-- 121
            A  +  K+   + ++P++ + SL+  L   + R    S K ++T+L +ALA LAL M  
Sbjct: 78  GASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGS-KIVLTRLCVALASLALSMMP 136

Query: 122 SAWEKPVVYIIEKLSHKGS-------ILALLEVLTVLPEEVNVLKLGKNRREEFEEELKA 174
            AW   V  ++     + S        LALLE+LTVLPEE    +L + R+      L  
Sbjct: 137 DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAV 196

Query: 175 AGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW---------------------SSGSLH 213
               V   L+           ++ KVLKCF+SW                         L 
Sbjct: 197 ECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELF 256

Query: 214 DAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTEL 273
           D++ + +   +   +     + +   +   +L L+EQ   AV + D+E     C++   L
Sbjct: 257 DSSVEAIVNAISQPDAQRYVNTLL-KLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVAL 315

Query: 274 AESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEIL 333
            E+    ++++    Q    +  +++++ C G   +   N     +S+T   WY L + +
Sbjct: 316 GENHSRALLDQVEHWQS--FLALVNMIMFCTGIPGHYPVNE--TTSSLTLTFWYTLQDDI 371

Query: 334 YVKNDDSLTVL---FKPHVERLIGALCKHCQLEPDLEGLL---EEDHDFYDFRLKVSELV 387
                +   V    ++P   +L+  L    Q   D E      +E   F  +R+ +S+ +
Sbjct: 372 LSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTL 431

Query: 388 KDVVFIVGSSTCFRHMFNSL------HENNVMWEQTEAALYIMQSVAKNVLPEENDVVPK 441
             V  ++G+     ++++ L       E    W+ TEA LY  QS+A+ +    +DVVP 
Sbjct: 432 MYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPG 490

Query: 442 VVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTAN 501
           ++  I      +++ +  T +  +G L EW+  HP  + ++L  +LH L  P L+  + +
Sbjct: 491 LIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVS 549

Query: 502 ALQSISTACCTHMVGHFNGLLQIIQ-CLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEA 560
            L+ I   C   +  +   ++ + Q  L          + L++ +  ++S +  ++I + 
Sbjct: 550 TLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609

Query: 561 LKQLCLVQVKPLCELIEKQIKPEKNKK--------SDPVIWLDRLAAIFKHTSPRIMS-- 610
           L  L    ++ L +L E+   P             S+    LD       H  P +    
Sbjct: 610 LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLP 669

Query: 611 ---EPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVK 667
               P+P   V+ +++ ++ K    +  DA+V+E        +++ +  DFA ++  L +
Sbjct: 670 VPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCE 729

Query: 668 QIVVLYSKHPHSSFLYLGSILVDEYATSH-CVSGLLDMVQAFLPPTYAILQEEDGLKNHP 726
            +  +YS  P +S L L   LV  +A        +  +       T  + Q+  G ++HP
Sbjct: 730 MLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQ--GPRDHP 787

Query: 727 DTVDDLFRLCTRFLQRAPIAFLTSS-FISSVMQCGILATHLDHREANSTVMKFFYDLIHN 785
           D VD   +L  + L+R P  FL     + +V QC +LA              FF +L+  
Sbjct: 788 DIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR 847

Query: 786 NRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADV 845
                                    +  +V + G+ L+  +L+A        +M   AD+
Sbjct: 848 CG-------------------EVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADI 888

Query: 846 LYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYD-VGQAL 904
           L+ L      + + W+++ +      +       +PEQ   F  Q+ R       V + +
Sbjct: 889 LFALNKHCFSLLSMWIKEALQPPGFPSA----RLSPEQKDTFSQQILRERVNKRRVKEMV 944

Query: 905 KELSRLYR 912
           KE + L R
Sbjct: 945 KEFTLLCR 952

PyMOL of 2x19

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		912
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	100.0
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1qgr_A		876	Protein (importin beta subunit); transport recepto	100.0
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.94
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.84
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.7
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.7
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.66
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	99.56
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.34
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.31
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.17
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.6
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.4
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	98.23
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.23
2x1g_F		971	Cadmus; transport protein, developmental protein,	98.02
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.01
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.96
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	97.96
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.84
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.82
2x19_B		963	Importin-13; nuclear transport, protein transport;	97.76
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.69
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	97.63
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.51
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.47
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.41
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.2
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.16
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.03
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.0
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.79
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	96.7
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.53
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	96.52
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	96.29
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	95.47
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	95.35
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	95.28
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	95.24
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	95.23
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	95.08
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	95.0
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	94.99
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	94.89
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.69
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.61
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	93.76
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	93.46
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	92.16
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	92.15
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	91.49
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	90.82
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	90.73
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	90.58
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	90.03
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	89.93
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	89.89
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	88.23
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	87.44
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	86.98
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	86.53
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	85.59
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	82.95
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	81.87

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

Probab=100.00  E-value=1e-91  Score=877.75  Aligned_cols=873  Identities=16%  Similarity=0.303  Sum_probs=709.7

Q ss_pred             CCCCccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCC
Q psy6178           1 MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELP   80 (912)
Q Consensus         1 m~~~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~   80 (912)
                      |+ +.++++++++++++|+ +|++.|++|++||++||++|++|.+|.+||..+.+  +++|||||++|+++|+++|..+|
T Consensus         1 m~-~~d~~~l~~~l~~~~~-~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~--~~vr~~aa~~L~~~i~~~w~~l~   76 (971)
T 2x1g_F            1 ME-PIDIARLEEAVVSFYR-SNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKS--QEVQFFGAITLHSKLMKHWHEVP   76 (971)
T ss_dssp             -----------CTHHHHHT-STTTC----CHHHHHTTTSTHHHHHHHHHTCTTSC--HHHHHHHHHHHHHHHHHCGGGCC
T ss_pred             CC-hhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHccHhhCC
Confidence            77 5889999999999886 58889999999999999999999999999987655  99999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc-CcchHHHHHHHHhcc-------c-chHHHHHHHHhhh
Q psy6178          81 SESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-AWEKPVVYIIEKLSH-------K-GSILALLEVLTVL  151 (912)
Q Consensus        81 ~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~-~W~~~~~~l~~~~~~-------~-~~~~~~L~iL~~l  151 (912)
                      ++++..+|+.|++++.+...+ |+.|++|+|.+++.++.+.. .||++++++++.+++       + ...+.++++|+.+
T Consensus        77 ~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l  155 (971)
T 2x1g_F           77 PENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAI  155 (971)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHh
Confidence            999999999999999886533 47999999999999999865 999999999999876       2 4678999999999


Q ss_pred             hhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCC------hHHHHHHHHHHHhhcC----------------
Q psy6178         152 PEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDN------VSLQTKVLKCFTSWSS----------------  209 (912)
Q Consensus       152 ~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~------~~~~~~~l~~l~sWi~----------------  209 (912)
                      |||+...+ +..+|..+++.+..+++.+++++.++++...++      .+++..+++|+.+|+.                
T Consensus       156 ~EEi~~~~-~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l  234 (971)
T 2x1g_F          156 PEEAQVIH-TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVL  234 (971)
T ss_dssp             HHHHHHCC-CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHH
T ss_pred             HHHHhccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHH
Confidence            99977543 556788899999999999999999998764322      1688999999998662                


Q ss_pred             -----------------------CcchHHHHHHHHhhchhhhccCCchHHHHHHHHHHhchHHHHHHHhcCCCh---HHH
Q psy6178         210 -----------------------GSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDL---EKC  263 (912)
Q Consensus       210 -----------------------~~l~~~a~~~l~~~l~~~~~~~~~~~l~~~l~~~v~~l~~~~~~~~~~~d~---~~~  263 (912)
                                             ++++++|++|+.++++..+. .++.+.+..++|.++++...+..++.++|.   +.+
T Consensus       235 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~  313 (971)
T 2x1g_F          235 LEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC-HNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDII  313 (971)
T ss_dssp             HHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG-GGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHH
T ss_pred             HhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc-cccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHH
Confidence                                   22456899999999986432 345678888999988877766555566674   889


Q ss_pred             hhHHHHHHHHHHHHHHHHH----hcccCCCcchh-hHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhccc--
Q psy6178         264 MNYCKLFTELAESLLDRIV----NESMTKQQPFS-IKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVK--  336 (912)
Q Consensus       264 ~~~~~l~~~l~~~~~~~l~----~~~~~~~~~~~-~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~--  336 (912)
                      ..++++++.+++.+...+.    +..  +..... ..+++.++.+++++++..  .++.++..+++||+.+.+...+.  
T Consensus       314 ~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~ll~~~~~~~~~~--~~~~v~~~~l~fw~~l~~~~~~~~~  389 (971)
T 2x1g_F          314 VHIYMLFVSSVERHSTLLLSGITSAD--PELSILVHRIVQEILHCTDKPGIYP--VEESCSTMALAFWYMLQDEVFAMSN  389 (971)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHCSSCTT--TTCTTHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCc--ccccHHHHHHHHHHHHHHcCCCCCC--cchhhhHHHHHHHHHHHHHHHhccc
Confidence            9999999999999888776    211  000112 347888999887743220  12459999999999998854321  


Q ss_pred             --CchhhhhcchHHHHHHHHHHHhhcCCCCCCC---CCccccchHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc--
Q psy6178         337 --NDDSLTVLFKPHVERLIGALCKHCQLEPDLE---GLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE--  409 (912)
Q Consensus       337 --~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~---~~~ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~--  409 (912)
                        ++......++|++.+++++++.|+.||+|++   |+.+|+++|.++|+.++|++++++.++|. .+++.+++.+.+  
T Consensus       390 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~-~~l~~~~~~l~~~l  468 (971)
T 2x1g_F          390 DEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND-YILEILAAMLDEAI  468 (971)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Confidence              1223456778999999999999999998753   55566789999999999999999999884 466666655543  


Q ss_pred             -----CCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHHHHHhcCcCcHHHHH
Q psy6178         410 -----NNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPP-STHIAVRYTSLLLLGELCEWIDKHPHTLETIL  483 (912)
Q Consensus       410 -----~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~-~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l  483 (912)
                           .+.+|+.+||++|+++++++++.....+.++++++.+.+++. ++||.||.++|+++|+|++|+..||+++++++
T Consensus       469 ~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl  548 (971)
T 2x1g_F          469 ADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAI  548 (971)
T ss_dssp             HHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHH
T ss_pred             HhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence                 237899999999999999999987777889999998888874 46999999999999999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhc-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy6178         484 NFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTL-SISNDAAIGLLKGVAIIVSDMPQDQISEALK  562 (912)
Q Consensus       484 ~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~-~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~  562 (912)
                      ++++.++ +|.|+.+||+||.+||++|+..|.||++.+++.+..+.+. .++.+.+..+++++|.+++++|.++..+++.
T Consensus       549 ~~l~~~l-~~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~  627 (971)
T 2x1g_F          549 NLLVRGL-NSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD  627 (971)
T ss_dssp             HHHHHHH-HSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred             HHHHHHh-ChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999 4899999999999999999999999999999999876543 3567889999999999999998778899999


Q ss_pred             HHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcC-CC-----CCChHHHHHhHhHHHHHHHHhhccc
Q psy6178         563 QLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIM-SE-----PHPCQGVITELWPVLSKTCETYQQD  636 (912)
Q Consensus       563 ~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~-----~~~~~~~~~~~~~~l~~~l~~~~~~  636 (912)
                      .+++|++++++++++.... +++.+......+++|++++++++.... ..     .+++.++.+++||++..+++.+.++
T Consensus       628 ~ll~~l~~~l~~~~~~~~~-~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~  706 (971)
T 2x1g_F          628 IIVSPCFEELQAICQADSK-TPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEE  706 (971)
T ss_dssp             HHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999998764320 111234456789999999999876422 11     5788999999999999999988888


Q ss_pred             hhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhcC-ccchHHHHHHHHHHhHHHHHh
Q psy6178         637 ARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT-SHCVSGLLDMVQAFLPPTYAI  715 (912)
Q Consensus       637 ~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~-~~~~~~l~~l~~~l~~~~~~~  715 (912)
                      ++++|++|.++++++.++|+++.||+|++++.++..|+.++.+|++++++.++..||. +.+.+.+.+++..++.+++.+
T Consensus       707 ~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~  786 (971)
T 2x1g_F          707 IDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKL  786 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998 678899999999999999999


Q ss_pred             hcCc--CCCCCCCchHHHHHHHHHHHHHhCCccccCchh-hHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccCCCCcc
Q psy6178         716 LQEE--DGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSF-ISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDK  792 (912)
Q Consensus       716 l~~~--~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~-l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~  792 (912)
                      |++.  +.+.++||++++||+|+.++++++|..+++++. +..++++++.+++.+|+++.+++++||..++..+..    
T Consensus       787 l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~----  862 (971)
T 2x1g_F          787 FESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRN----  862 (971)
T ss_dssp             HTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTT----
T ss_pred             HhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCc----
Confidence            8863  245679999999999999999999999999898 999999999999999999999999999999987432    


Q ss_pred             cCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCCcchhhHHHHHHHHHHhChHHHHHHHHHHHh--cCCC
Q psy6178         793 DGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTIS--QLPK  870 (912)
Q Consensus       793 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~~~~~~~~~wl~~~l~--~~p~  870 (912)
                                     .+.+++++.++|+.|+..++.+++|+.||+.+++++++|+++..++|+++.+||.+++.  .+|.
T Consensus       863 ---------------~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~~~~p~  927 (971)
T 2x1g_F          863 ---------------HAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPT  927 (971)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTSSSCSC
T ss_pred             ---------------hHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccCCCC
Confidence                           23688999999999999999999999999999999999999999999999999999997  6887


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhhcC
Q psy6178         871 NTPAGMNAATPEQLIEFHSQVTRSE-SAYDVGQALKELSRLYR  912 (912)
Q Consensus       871 ~~~~~~~~~t~~~k~~f~~~l~~~~-~~~~~~~~~~~F~~~cr  912 (912)
                      .      ++|+++|++|++++++.+ +.|+||+++++||..||
T Consensus       928 ~------~~~~~~~~~f~~~l~~~~~~~r~~~~~~~~f~~~~r  964 (971)
T 2x1g_F          928 Q------LITDADKTRYTALIIKEKVNKRLLQQHLSEMAMKTR  964 (971)
T ss_dssp             S------SSCHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             C------cCCHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHc
Confidence            6      799999999999998886 88999999999999997

PyMOL of 2x1g

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		912
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-20
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	1e-13
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	3e-13
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	1e-10
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-08

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (236), Expect = 1e-20
 Identities = 89/788 (11%), Positives = 223/788 (28%), Gaps = 36/788 (4%)

Query: 2   ESQPSLDTVYAVVHTL--YLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLE 59
           E +P    +  ++  L    +P+ T +    Q L QL +          +L         
Sbjct: 2   EWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP 61

Query: 60  AVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLA- 118
               S   ++  V+  F   P+     ++   + ++  ++      I   + + +  +A 
Sbjct: 62  TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSS----PLIRATVGILITTIAS 117

Query: 119 -LQMSAWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAA 175
             ++  W   +  +   L  +   +       L  + E+   +       +  +  L   
Sbjct: 118 KGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI----LDSDVLDRPLNIM 173

Query: 176 GPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDA 235
            P  ++F K        +  +++  + C   +             S    +     + + 
Sbjct: 174 IPKFLQFFKH------SSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEP 227

Query: 236 VNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIK 295
                    L +  +  M      +   + Y    T+  +  +     E         I 
Sbjct: 228 EVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 287

Query: 296 ALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGA 355
              LV             +      I         +     ++  +   F          
Sbjct: 288 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQH 347

Query: 356 LCKHCQLEPDLEGLLEEDHDFYDFRL-KVSELVKDVVFIVGSSTCFRHMFNSLHE--NNV 412
                + E D +  +++D    D+ L K S    DV+  V       H+   L E   + 
Sbjct: 348 DEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH 407

Query: 413 MWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWI 472
            W   E+ + ++ ++A+  +      +P+++  ++         VR  +   L     W+
Sbjct: 408 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 467

Query: 473 --DKHPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGHFNGLLQIIQCL 528
                   L+ ++  LL  +      +     +A  ++    CT +V +   +L  +   
Sbjct: 468 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA 527

Query: 529 DTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKS 588
            +     +  I       +  S        E ++ L    ++    L ++        + 
Sbjct: 528 FSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLEC 587

Query: 589 DPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLR 648
              +     +    +  P      +  Q  + +     ++  +    D   M  +   L 
Sbjct: 588 LSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS 647

Query: 649 YAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAF 708
                +G +   L+       ++          +   S  +    T  C   +   +  F
Sbjct: 648 GLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADF 707

Query: 709 LPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDH 768
           +P     L  E          ++          +  I      +I  V+    L   ++ 
Sbjct: 708 MPILGTNLNPEF-----ISVCNNATWAIGEISIQMGIEM--QPYIPMVLHQ--LVEIINR 758

Query: 769 REANSTVM 776
                T++
Sbjct: 759 PNTPKTLL 766

PyMOL of d1qbkb_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		912
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	100.0
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	100.0
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.96
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	99.57
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.5
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.32
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.19
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.06
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.01
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.83
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.12
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.11
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.41
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.88
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.18
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	91.61
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	90.78
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	90.63
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	89.22
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	88.13
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	86.39
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	86.09
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	85.95

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=384.31  Aligned_cols=719  Identities=13%  Similarity=0.154  Sum_probs=455.4

Q ss_pred             CccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCccc
Q psy6178           4 QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSES   83 (912)
Q Consensus         4 ~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~   83 (912)
                      +..++++.++++...+ +|++.|++|+++|+++++.|+.|.++..++....+.+..+|++|+.+||++|+++|..++++.
T Consensus         7 ~~~l~ql~~~L~~~~s-~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~   85 (888)
T d1qbkb_           7 EQGLQQILQLLKESQS-PDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV   85 (888)
T ss_dssp             HTTHHHHHHHHTTCCH-HHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTC
T ss_pred             hHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence            3567888888877654 588999999999999999999999998888864433477999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc--CcchHHHHHHHHhccc--chHHHHHHHHhhhhhhccccc
Q psy6178          84 HVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS--AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLK  159 (912)
Q Consensus        84 ~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~--~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~~~~~  159 (912)
                      +..||+.++..+..   .+ +.||++++.+++.++...+  .||++++.+++.+.++  ...+..+..|..++|+.....
T Consensus        86 ~~~Ik~~ll~~l~~---~~-~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~  161 (888)
T d1qbkb_          86 TDFIKSECLNNIGD---SS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL  161 (888)
T ss_dssp             CHHHHHHHTTGGGC---CC-SSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHH
T ss_pred             HHHHHHHHHHHHcC---CC-HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence            99999999988754   33 4799999999999998654  7999999999988765  445667778888888754300


Q ss_pred             CChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHHHHHHhhchhhhccCCchHHHHH
Q psy6178         160 LGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLN  239 (912)
Q Consensus       160 ~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~l~~~~~~~~~~~l~~~  239 (912)
                              -.+........++..+.+.+.+.  +..++..+++|+..++                .....  .....+..
T Consensus       162 --------~~~~~~~~~~~ll~~ll~~~~~~--~~~vr~~al~~l~~~~----------------~~~~~--~~~~~~~~  213 (888)
T d1qbkb_         162 --------DSDVLDRPLNIMIPKFLQFFKHS--SPKIRSHAVACVNQFI----------------ISRTQ--ALMLHIDS  213 (888)
T ss_dssp             --------HTC---CCSTTTTHHHHTGGGSS--SSCSSSTTTHHHHGGG----------------GCCCS--TTCSHHHH
T ss_pred             --------hHHHHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHH----------------HhhhH--HHHHHHHH
Confidence                    00112223344454555555543  3456677777776543                21111  11112222


Q ss_pred             HHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhcCCCCcccccCccch
Q psy6178         240 VFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVA  319 (912)
Q Consensus       240 l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~e~vs  319 (912)
                      +++.       +.....+.+.+....+++.++.+.+.++..+.++.        ..+++.++....+++.+       ++
T Consensus       214 ~l~~-------l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l--------~~i~~~~l~~~~~~~e~-------v~  271 (888)
T d1qbkb_         214 FTEN-------LFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--------HNIVEYMLQRTQDQDEN-------VA  271 (888)
T ss_dssp             CSHH-------HHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTT--------TTTTTTTTTTTTSSCHH-------HH
T ss_pred             HHHH-------HHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHH--------HHHHHHHHHhcCCCcHH-------HH
Confidence            2222       11222344455556666666555444333332222        12455555555554444       88


Q ss_pred             hhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCC---------C-----------------------
Q psy6178         320 SITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDL---------E-----------------------  367 (912)
Q Consensus       320 ~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~---------~-----------------------  367 (912)
                      ..+++||..+.+....      .....+++.++++.++..+.|+..+         +                       
T Consensus       272 ~~a~ef~~~~~e~~~~------~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  345 (888)
T d1qbkb_         272 LEACEFWLTLAEQPIC------KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQ  345 (888)
T ss_dssp             HHHHHHHCCCCSGGGG------TTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCC
T ss_pred             HHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            8999999887653211      1222333344444444444432210         0                       


Q ss_pred             ---------C-------CccccchHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhc
Q psy6178         368 ---------G-------LLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAK  429 (912)
Q Consensus       368 ---------~-------~~ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae  429 (912)
                               +       ++++.......|+..+.++..+....|.+ +++.+.+.+.+  .+++|+.+||++++++++++
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~-il~~~l~~l~~~l~s~~~~~reaa~~alg~i~e  424 (888)
T d1qbkb_         346 QHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAE  424 (888)
T ss_dssp             CCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSS-SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTT
T ss_pred             HhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHH-HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhh
Confidence                     0       00000111124666666666666666654 56666666654  46789999999999999999


Q ss_pred             ccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc--CcHHHHHHHHHHhcCCC--ChHHHHHHHHHH
Q psy6178         430 NVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP--HTLETILNFLLHCLQQP--GLASVTANALQS  505 (912)
Q Consensus       430 ~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p--~~l~~~l~~l~~~l~~~--~v~~~A~~al~~  505 (912)
                      ++.....++++++++.+.....+++|.||.++++++|+|++|+....  +++.++++.++..+.++  +|+.+|+.||..
T Consensus       425 g~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~  504 (888)
T d1qbkb_         425 GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFAT  504 (888)
T ss_dssp             TSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred             hHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            98655567899999988776677899999999999999999997653  47788999999988775  499999999999


Q ss_pred             HHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHhHHHHHHHHHhcCCCCC
Q psy6178         506 ISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQD-QISEALKQLCLVQVKPLCELIEKQIKPEK  584 (912)
Q Consensus       506 l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~-~~~~~l~~l~~p~~~~l~~~~~~~~~~~~  584 (912)
                      +++.+...+.||++.+++.+...... ...+.+..++++++.++...... ....++..++.++++.+...    .  +.
T Consensus       505 l~~~~~~~l~p~~~~il~~l~~~l~~-~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~--~~  577 (888)
T d1qbkb_         505 LEEEACTELVPYLAYILDTLVFAFSK-YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNML----K--DE  577 (888)
T ss_dssp             HHHHHTTSSGGGHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTS----C--TT
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhc----c--cc
Confidence            99999999999999999998765543 35566778889999988765442 23455565555554433221    1  11


Q ss_pred             CCCCChHHHHHHHHHHhhhcCCCcCCCCCCh-HHHHHhHhHHHHHHHHhh-----------ccchhHHHHHHHHHHHHHH
Q psy6178         585 NKKSDPVIWLDRLAAIFKHTSPRIMSEPHPC-QGVITELWPVLSKTCETY-----------QQDARVMEHSSRCLRYAIR  652 (912)
Q Consensus       585 ~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~-----------~~~~~v~e~~~~~~~~~~~  652 (912)
                        .......+++++.+...++...    .|. .+++++++.++...+...           ..+.+++..++.++..++.
T Consensus       578 --~~~~~~~le~l~~i~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~  651 (888)
T d1qbkb_         578 --DKDLFPLLECLSSVATALQSGF----LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAE  651 (888)
T ss_dssp             --CTTHHHHHHHHHHHHHHSTTTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHHHHHhHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHH
Confidence              1234456788888888776421    121 123333333333222110           0122333333333333333


Q ss_pred             HhchhhHHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHH
Q psy6178         653 CVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDL  732 (912)
Q Consensus       653 ~l~~~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~  732 (912)
                      .+|..+.|++                                       ..  ..+....+..++     +.++++.+..
T Consensus       652 ~l~~~~~~~~---------------------------------------~~--~~l~~~l~~~l~-----~~~~~vr~~a  685 (888)
T d1qbkb_         652 GLGGNIEQLV---------------------------------------AR--SNILTLMYQCMQ-----DKMPEVRQSS  685 (888)
T ss_dssp             HHTTTTHHHH---------------------------------------HT--SCHHHHHHHHHT-----CSSHHHHHHH
T ss_pred             Hhhhhhhhhh---------------------------------------hH--hhHHHHHHHHhC-----CCChHHHHHH
Confidence            3333322221                                       10  001111222233     2467899999


Q ss_pred             HHHHHHHHHhCCccccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHH
Q psy6178         733 FRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMK  812 (912)
Q Consensus       733 f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  812 (912)
                      |.++..+.+.++..+.  +.++.++.....++.....++...++..+..+....+..                       
T Consensus       686 ~~llgdl~~~~~~~~~--~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~-----------------------  740 (888)
T d1qbkb_         686 FALLGDLTKACFQHVK--PCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE-----------------------  740 (888)
T ss_dssp             HHHHHHHHHHCGGGTG--GGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGG-----------------------
T ss_pred             HHHHHHHHHhhhHHHH--HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence            9999999999987763  456777777777777666666677777777777544321                       


Q ss_pred             HHHHHhhHHHHHHHHHHccc-cCCCcchhhHHHHHHHHHHhChHHHHHHH----HHHHhcCCC
Q psy6178         813 DIVSKHGQALVSNLLQACVF-SLHTYMMADVADVLYELISVDRQVSNQWL----QDTISQLPK  870 (912)
Q Consensus       813 ~~~~~~g~~lv~~ll~~~~~-~~~~~~~~~~a~vL~~l~~~~~~~~~~wl----~~~l~~~p~  870 (912)
                        +..+-+.++..++..+.. ..+++..++++.+|..+...+|+.+...+    ...+..+|.
T Consensus       741 --~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~  801 (888)
T d1qbkb_         741 --MQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN  801 (888)
T ss_dssp             --GGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTT
T ss_pred             --hhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhcc
Confidence              233445555556555543 46677889999999999999998764333    334445554

PyMOL of d1qbkb_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure