Diaphorina citri psyllid: psy6275

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
MIYYCLFCRESKTKACMKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQSKKIN
ccEEEcccccccccccEEEEEEEcccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHcccEEEEccccHHHHcccHHHHHHHccccccccccccccccccEEEEcHHHHHHHHHccccccccccEEEEEEEEEccccccccEEEEEEEEccccccEEEEEcccccHHHHHHHHHHHccccCEEEEccccccccccEEEccccccccEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccc
MIYYCLFCRESKTKACMKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLAN**********************QTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQSKK**
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MIYYCLFCRESKTKACMKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQSKKIN

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

No confident close homologs for annotation transfer were detected in SWISS-PROT

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0071013 [CC]catalytic step 2 spliceosomeprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0071049 [BP]nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcriptionprobableGO:0071028, GO:0071025, GO:0071027, GO:0044248, GO:0034641, GO:0006807, GO:0044699, GO:1901361, GO:0006139, GO:0090304, GO:0044265, GO:0044260, GO:0070727, GO:0046483, GO:0009057, GO:0071704, GO:1901360, GO:0006401, GO:0006402, GO:0033036, GO:0071033, GO:0071031, GO:0044238, GO:0009987, GO:0006725, GO:1901575, GO:0046700, GO:0008150, GO:0008152, GO:0034655, GO:0009056, GO:0051179, GO:0051641, GO:0016070, GO:0016071, GO:0006403, GO:0044270, GO:0044237, GO:0043170, GO:0000956, GO:0008298, GO:0019439, GO:0044763
GO:0008143 [MF]poly(A) RNA bindingprobableGO:0005488, GO:0097159, GO:0070717, GO:0003727, GO:0003674, GO:0003723, GO:0003676, GO:1901363, GO:0003729
GO:0031499 [CC]TRAMP complexprobableGO:0043234, GO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0043634 [BP]polyadenylation-dependent ncRNA catabolic processprobableGO:0090304, GO:0034641, GO:0006807, GO:0034661, GO:0034660, GO:0043632, GO:0043633, GO:1901360, GO:1901361, GO:0006139, GO:1901575, GO:0044265, GO:0044260, GO:0071704, GO:0006401, GO:0009987, GO:0006725, GO:0046700, GO:0008150, GO:0008152, GO:0034655, GO:0009056, GO:0009057, GO:0044248, GO:0046483, GO:0016070, GO:0044238, GO:0044270, GO:0044237, GO:0043170, GO:0019439
GO:0044767 [BP]single-organism developmental processprobableGO:0032502, GO:0008150, GO:0044699
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0050794 [BP]regulation of cellular processprobableGO:0008150, GO:0065007, GO:0050789
GO:0050896 [BP]response to stimulusprobableGO:0008150
GO:0009653 [BP]anatomical structure morphogenesisprobableGO:0032502, GO:0048856, GO:0008150
GO:0043629 [BP]ncRNA polyadenylationprobableGO:0090304, GO:0034641, GO:0006807, GO:0034660, GO:0043631, GO:1901360, GO:0006139, GO:0044260, GO:0071704, GO:0010467, GO:0034470, GO:0009987, GO:0006725, GO:0031123, GO:0008150, GO:0008152, GO:0043628, GO:0046483, GO:0016070, GO:0044238, GO:0044237, GO:0043170, GO:0006396
GO:0022008 [BP]neurogenesisprobableGO:0032502, GO:0048856, GO:0044707, GO:0007399, GO:0048869, GO:0030154, GO:0008150, GO:0032501, GO:0044763, GO:0048731, GO:0009987, GO:0007275, GO:0044699
GO:0005773 [CC]vacuoleprobableGO:0005737, GO:0043231, GO:0044464, GO:0043229, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0043227, GO:0043226
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0000178 [CC]exosome (RNase complex)probableGO:0043234, GO:0032991, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424
GO:0000460 [BP]maturation of 5.8S rRNAprobableGO:0090304, GO:0034641, GO:0006807, GO:0034660, GO:0071840, GO:0006139, GO:0044260, GO:1901360, GO:0042254, GO:0071704, GO:0010467, GO:0006364, GO:0022613, GO:0034470, GO:0009987, GO:0006725, GO:0008150, GO:0008152, GO:0046483, GO:0016070, GO:0044238, GO:0016072, GO:0044237, GO:0043170, GO:0044085, GO:0006396
GO:0004004 [MF]ATP-dependent RNA helicase activityprobableGO:0016787, GO:0016818, GO:0008026, GO:0042623, GO:0003824, GO:0017111, GO:0016817, GO:0004386, GO:0070035, GO:0003724, GO:0003674, GO:0016887, GO:0008186, GO:0016462

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2XGJ, chain A
Confidence level:very confident
Coverage over the Query: 26-273,295-386
View the alignment between query and template
View the model in PyMOL